BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] (480 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|20806999|ref|NP_622170.1| flagellar hook-associated protein FlgK [Thermoanaerobacter tengcongensis MB4] gi|20515482|gb|AAM23774.1| Flagellar hook-associated protein [Thermoanaerobacter tengcongensis MB4] Length = 482 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/495 (15%), Positives = 171/495 (34%), Gaps = 34/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V +V R D + +G+ + E + ++ ++ T + Sbjct: 61 AIGEGVKIVDIRQIRDQFLDNQYRRENKFLGEWETKAEVLSAIENIF-NEPSSSGITAVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A + FN + + + + I+ I+ + Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNMVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N I S A+D DQR++L+ ++S+++ I+T N + + Sbjct: 180 SYAERISRLNGEIYRFELSGQVANDLRDQRNLLVDQLSKLVNITTYEDANGNFRIDIGGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + T ++ +K + +P+ V+ G VP Sbjct: 240 ALVSGTTAFTMSMDKNGNVIWDLTGSPVNPSSGVLKGLLDMRNGDGADGV------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + Q +++A + + ++ + G + G + Sbjct: 294 YYMEQWNKLAYNIAEAINKVHSQGYGLDGSTGKPLFGGFDTSLAYDKTTPYAQLIRV--- 350 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L G + + L G ++ + D T ++A Sbjct: 351 --SSDILASDGLLKIAAAKDPTALPGDN------RNALELIVLRDRPLDGLDKATFDDFA 402 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + +V+ I + + GV+L EE++ ++K ++SY ++ Sbjct: 403 RSLISNLGVDAEQANVMKKNQEVMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAACARV 462 Query: 465 IMFTDKMLQTLLEGV 479 I D+++ T++ + Sbjct: 463 ITAMDELIDTVINRM 477 >gi|296134284|ref|YP_003641531.1| flagellar hook-associated protein FlgK [Thermincola sp. JR] gi|296032862|gb|ADG83630.1| flagellar hook-associated protein FlgK [Thermincola potens JR] Length = 479 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 172/493 (34%), Gaps = 40/493 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S N + + NI NA+ + + R+ + + Sbjct: 3 STFFGLNIGRQALQAQQRALDVTAHNIANANTEGFSRQRAVMATTTPFAYPSVNRPIGAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + + D + + G+ + E++ ++ + + Sbjct: 63 QIGTGVMVEEVKRMRDSFIDLQVRQEVNKTGEWETKNNSLQKLEVIF-NEPSDAGLRTVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + ++ + SK + + V V + FN ++ + D D I++++ + Sbjct: 122 DQFWEAWQELSKKPELEAVRSLVRQRGIAVAETFNHLDGQLTDLAEDLDASIKIKVDEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ +ND I +A+D D+RD+LL ++S+I+ I+ N+ + V Sbjct: 182 NIAGQIDALNDQIVRIEVQGDNANDLRDKRDLLLDELSKIVQITVKEDNSGSVTVSIGGR 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ + N ++D +V G IK +L +RD+ +P Sbjct: 242 ALVSVAGVSKISAVPNGA-------NNGYVDLQWAVDGTAVSVQSGSIKGMLDMRDTTIP 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ QLD++A L+ S + TI ++ Sbjct: 295 SYRQQLDDLANALVTSLNAVHVAGYGLNKTANGINFFDAAGTTAA-------TISIDAAI 347 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + +G + + ++ + T+ +Y Sbjct: 348 LGDLDNIAAASTAADPLASPSVENSGDGSNALNIAELKHQALL--------GTATIDDYY 399 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R + L +S + ++ + + GV+L EE++ +IK + +YN + + Sbjct: 400 RGMVAQLGVEAQESSRMVENQNLLLSQLENRRQEVSGVSLDEEMTNMIKFQHAYNAAART 459 Query: 465 IMFTDKMLQTLLE 477 I D+ML T++ Sbjct: 460 ITAMDEMLDTIVN 472 >gi|254478858|ref|ZP_05092223.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum DSM 12653] gi|214035220|gb|EEB75929.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum DSM 12653] Length = 484 Score = 269 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 81/495 (16%), Positives = 179/495 (36%), Gaps = 32/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V +V R D + +G+ + E + ++ ++ T + Sbjct: 61 AIGEGVKIVDIRQIRDQFLDNQYRRENKFLGEWETKAEVLSAIENIF-NEPSSSGITAVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A +V FNT + + + + I+ I+ + Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALVDTFNTVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N I S A+D DQR++L+ ++S+++ I+T N + + Sbjct: 180 SYAERISRLNGEIYRFELSGQVANDLRDQRNLLVDQLSKLVNITTYEDANGNFRIDIGGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + T ++ +K + +P+ V+ G +P Sbjct: 240 ALVSGTTAFTMSMDKNGNVIWDLTKSPVNPSSGVLKGLLDMRDGDGTNGV------KGIP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + Q +++A + S +E + G + + D TI Sbjct: 294 YYMEQWNKLAYNIAKSINEVHSQGYGLDGSTGNLLFE---GFDTSSTSTYDRTIPYAQLV 350 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + L G + + L G ++ N + D T ++A Sbjct: 351 KVSSAILASDGLLKIAAAKDPAALPGDN------RNALNLIALRDIPVQGLDKATFDDFA 404 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + +++ I + +T GV+L EE++ ++K ++SY ++ Sbjct: 405 RSLIANLGVDAEQANVMKKNQEIMVKQIDLNRQSTSGVSLDEEMTNMLKYQKSYAACARV 464 Query: 465 IMFTDKMLQTLLEGV 479 I D+++ T++ + Sbjct: 465 ITAMDELIDTIINRM 479 >gi|256750927|ref|ZP_05491811.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus CCSD1] gi|256750262|gb|EEU63282.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus CCSD1] Length = 480 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 72/495 (14%), Positives = 173/495 (34%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A + FNT + + + + I+ I+ + Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ ++S+++ I+T +N + + + Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNRNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ + P+ ++ G VP Sbjct: 240 ALVDGSTAFTMSLNNTGAVVWDLTGAPVNPSSGILKGLLDMRDGDGTNGI------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + +E + G+ + + Q + Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDGSTGIPLFTDFTTPYDSTVQYAKLIKVSSDIL 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ L + + L ++ + D + T ++A Sbjct: 354 AAD-------------GLEKIAAASSMATLPGDNTNALKLIALRDQGNAVLNGATFDDFA 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + + + I + + GV+L EE++ ++K ++SY S ++ Sbjct: 401 RSLISNLGVDAQQANLMQKNQEFMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAASARV 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITAIDELLDTLINRM 475 >gi|297544025|ref|YP_003676327.1| flagellar hook-associated protein FlgK [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841800|gb|ADH60316.1| flagellar hook-associated protein FlgK [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 480 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 68/495 (13%), Positives = 166/495 (33%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMVSIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGEWETKAEVLAAIENIF-NEPSDSGINTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S+N + V + A + FNT + + + + I+ I+ + Sbjct: 120 NDFFNSLQELSENPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ ++S+++ I+T +N + + + Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ P+ V+ G VP Sbjct: 240 ALVAGSTAFTMSLNNTGEVVWDLTGTPVNPSSGVLKGLLDMRDGDGTNGV------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + +E + + + + Q + Sbjct: 294 YYINEWNKLAYSMAQAINEVHKSGYGLDGSTDIPLFTDFTTPYDSTVQYAQLIKVSSHIL 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L + + L ++ + D T ++ Sbjct: 354 ADD-------------GLQKIAAASSDATLPGDNTNALKLIALRDQAISELDGATFDDFV 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 I L + ++ + + + I + + GV+L EE++ ++K +++Y S ++ Sbjct: 401 GALISNLGVDAEQANLMLENQEFMIEQIDLNRQSISGVSLDEEMTNMLKYQKAYAASARI 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITAIDELLDTLINKM 475 >gi|167038179|ref|YP_001665757.1| flagellar hook-associated protein FlgK [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039112|ref|YP_001662097.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X514] gi|300913298|ref|ZP_07130615.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X561] gi|307723688|ref|YP_003903439.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X513] gi|320116588|ref|YP_004186747.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853352|gb|ABY91761.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X514] gi|166857013|gb|ABY95421.1| flagellar hook-associated protein FlgK [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889983|gb|EFK85128.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X561] gi|307580749|gb|ADN54148.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X513] gi|319929679|gb|ADV80364.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 480 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 72/495 (14%), Positives = 173/495 (34%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A + FNT + + + + I+ I+ + Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ ++S+++ I+T +N + + + Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNRNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ + P+ ++ G VP Sbjct: 240 ALVDGSTAFTMSLNNTGAVVWDLTGAPVNPSSGILKGLLDMRDGDGTNGI------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + +E + G+ + + Q + Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDGSTGIPLFTDFTTPYDSTVQYAKLIKVSSDIL 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ L + + L ++ + D + T ++A Sbjct: 354 AAD-------------GLEKIAAASSTATLPGDNTNALKLIALRDQGNAVLNGATFDDFA 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + + + I + + GV+L EE++ ++K ++SY S ++ Sbjct: 401 RSLISNLGVDAQQANLMQKNQEFMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAASARV 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITAIDELLDTLINRM 475 >gi|225181620|ref|ZP_03735061.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus AHT 1] gi|225167728|gb|EEG76538.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus AHT 1] Length = 494 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 179/496 (36%), Gaps = 21/496 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 MS N ++ + N+ NA+ Y R+ + + Sbjct: 1 MSTFFGLNISRLGMQAQQKALEVTAHNVANANTPGYSRQVAGMSTTTPLPYPNGQGMLGS 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + D + +G + + + EM+ + + +S Sbjct: 61 GVKVSQIARVRELFLDNQIRDEMHILGNWESRKEYLSQVEMIFM-EPSDTGFNSVLSTFF 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DS + S + +++NA +V + + +++ +RAD K+IEL++++L Sbjct: 120 DSWQELSLSPESSPARAALVENANFLVNSIQHTYTQLESVRADITKDIELKVNDLNSLAE 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +N I TA +D +D+RD+LL +++++ + +N + ++ G L Sbjct: 180 QIKDLNQQITTLTAKGDSPNDLMDRRDLLLDNLAKMVNYDLHIADNGAVNIFI-GGRPLV 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + SE P V + + + G+I L+ RD + + Sbjct: 239 QQNIVNTLKTVEGTPEQNSEWLPG-PQIVWSRDERPTQINSGEIAGLIATRDDDLRKYME 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-----CVNPQ 343 + + MA L+ S +E + G+ G + + I + P Sbjct: 298 EFESMAWGLVDSINEYHNNGMDLTGEYGIDFFTGDHLKTIGVNKDIQNDLRKIAASTPPI 357 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 R + N ++ + + T + Sbjct: 358 PRGEDGSEEAPFKPAPGDGSNAVQISQLRNSRITVNSDAKNLRGRLELDDEGGT-TFANF 416 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 R++I L + +S + + +S+ + GV++ EE++ +++ + SY S + Sbjct: 417 YRDTIARLGVDSQESIRMATNQTSLVEMMSDRRDSISGVSIDEEMANMVQFQLSYQASAR 476 Query: 464 LIMFTDKMLQTLLEGV 479 +I D++ TL+ + Sbjct: 477 VITTLDEIYDTLINRM 492 >gi|289577712|ref|YP_003476339.1| flagellar hook-associated protein FlgK [Thermoanaerobacter italicus Ab9] gi|289527425|gb|ADD01777.1| flagellar hook-associated protein FlgK [Thermoanaerobacter italicus Ab9] Length = 480 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 73/495 (14%), Positives = 169/495 (34%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMVSIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGKWETKAQVLAAIENIF-NEPSDSGINTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A + FNT + + + + I+ I+ + Sbjct: 120 NNFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ ++S++I I+T +N + + + Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLINITTYEDSNGNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ P+ V+ VP Sbjct: 240 ALVAGSTAFTMSLNNTGEVVWDLTGTPVNPSSGVLKGLLDMRDGDSTNGV------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + +E + G+ + + Q + Sbjct: 294 YYINEWNKLAYSMAQAINEVHKSGYGLDGSTGIPLFTDFTTPYDSTVQYAQLIKVSSHIL 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L + + L ++ + D T ++A Sbjct: 354 ADD-------------GLQKIAAASSDATLPGDNTNALKLIALRDQAISELDGATFDDFA 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + + + I + + GV+L EE++ ++K ++SY S ++ Sbjct: 401 RSLISNLGVDAEQANLMQKNQKFMIKQIDLNRQSISGVSLDEEMTNMLKYQKSYAASARM 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITAIDELLDTLINKM 475 >gi|307265481|ref|ZP_07547036.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii Rt8.B1] gi|306919435|gb|EFN49654.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii Rt8.B1] Length = 480 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 74/495 (14%), Positives = 174/495 (35%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTTGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGEWETKAQVLAAVENIF-NEPSDSGISTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ +KN + V + A + FNT + + + + I+ I+ + Sbjct: 120 NDFFNSLQELAKNPESLTVRAEVRERAIALADTFNTVYQHLNDKLNELNSTIQSRIAEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I S A+D DQR++L+ ++S+++ I+T +N + + + Sbjct: 180 SYADRISKLNNEIYRFELSGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + + +K + + ++ G +P Sbjct: 240 ALVDGSTAFTMGIDKDGKVVWDLTGSSVNPSSGILKGLLDMRDGDGSNGI------KGIP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + +E ++ + + D + Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDSSTNIPLF--TDFADPYDPVVKYAQLIKVSSD 351 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + L+ + S L ++ + D T ++A Sbjct: 352 ILDSNGLQKIAAASSS-----------ATLPGDNTNALLLINLRDQGIPELDGATFDDFA 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + QV+ I + + GV+L EE++ +IK ++SY S ++ Sbjct: 401 RSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMIKYQKSYAASARV 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITAMDELLDTLINRM 475 >gi|220932550|ref|YP_002509458.1| flagellar hook-associated protein FlgK [Halothermothrix orenii H 168] gi|219993860|gb|ACL70463.1| flagellar hook-associated protein FlgK [Halothermothrix orenii H 168] Length = 471 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 73/497 (14%), Positives = 185/497 (37%), Gaps = 45/497 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS + + NI NA+ + Y R+ + T + Sbjct: 1 MSTFYGIELGKRALQVQKKSLDVTGHNIANANTEGYSRQRAVHTTTDPYTVPGFTSPAGA 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + ++ + +G + E++ ++ N + Sbjct: 61 GQVGTGVKIEQIVRLKDDFITSRINNETQDLGAWEARKDNLHQIELIF-NEPSENGLRNL 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S S N + + TV + A+ +++ F ++ ++ +++ D + +I++ + + Sbjct: 120 MDLFWSSWHELSLNPESEGVRSTVREQAKTLIEGFKSTYNQLIQLKDDINHDIDVNVQRV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 ++ ++N I + A+D D+RD+L++K+++ I + ++ + Sbjct: 180 NTLGEKIAMLNKRIVAVESDPQKRANDLRDKRDLLVKKLAKYINVQAHEDGQGNLNLSIG 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + I E+ T+ ++ + V N + GKIK + +RD Sbjct: 240 GVSFVTGDTFHKIELEE---ITLPGTTSYKVVKPVWSHINSDVTITSGKIKGAMDVRDKD 296 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + ++L+E+ ++ + + G+ D K + + Sbjct: 297 IIQYIDKLNELVEGIVTEVNSIHSSGEDLNGNTGVDFFDSSKTTADTMSL---------- 346 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + N A + ++ + + + T E Sbjct: 347 -------------DSAIESDLNAIAAAQTGGGVGDGRNAEAIAELQNALTMSGNKSTFNE 393 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + I L ++ ++ +V+ N++ ++ GV+L EE++ +IK +Q+YN + Sbjct: 394 FYTSIISGLGVEAEKANMMYDNQEVMINNLENKQASISGVSLDEEMANMIKFQQAYNAAA 453 Query: 463 KLIMFTDKMLQTLLEGV 479 K++ D+ML TL+ G+ Sbjct: 454 KMVSKVDEMLNTLINGM 470 >gi|326389602|ref|ZP_08211168.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus JW 200] gi|325994317|gb|EGD52743.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus JW 200] Length = 482 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 73/495 (14%), Positives = 167/495 (33%), Gaps = 34/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + + NI NA+ Y R+ Sbjct: 1 MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 E V + R D + +G+ A E + ++ ++ + Sbjct: 61 AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V + A + FNT + + + + I+ IS + Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRISEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ ++S+++ I+T +N + + + Sbjct: 180 SYADRISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ + + + ++ G VP Sbjct: 240 ALVDGSTAFTMSMDSTGNVVWDLTGTSVNPSSGILKGLLDMRDGDGTNGI------KGVP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+ +++A + + + + + G + + Sbjct: 294 YYINEWNKLAYSIAKEINAVHESGYGLDGSHDIPLFGGFDTTGAYDSKVQYAQLIKV--- 350 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L G + L G + T ++A Sbjct: 351 --SSQILASDGLQKIAAASDPNALPGDNTNALQLIGLRDIPI------QGLNGATFDDFA 402 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R+ I L + ++ + QV+ I + + GV+L EE++ ++K ++SY S ++ Sbjct: 403 RSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYVASARV 462 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 463 ITVMDELLDTLINRM 477 >gi|332982896|ref|YP_004464337.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1 BON] gi|332700574|gb|AEE97515.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1 BON] Length = 495 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 76/509 (14%), Positives = 169/509 (33%), Gaps = 52/509 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S ++ N Q NI NA Y R+ ++ Sbjct: 3 STFYGLQIGKSAINLQQQALNVTAHNIANAGTPGYTRQQVISEAIVPPSTLGMGYIYGRW 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + R D + S +GQ + + E + ++ T + Sbjct: 63 QVGGGADIQEIRQLRDGYLDAQFRSESQLLGQWEVRRDMLQHLEGIF-NEPSETGITTVV 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + SLE SKN + V + + +++ +++ AD+ + + + ++ Sbjct: 122 EQFFSSLEELSKNPESMSVRALVRERGITLADTIRHVYNQLEGLQSQADQGVAITVQDIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I A+D D+R++L+ ++S++I I+ + V D Sbjct: 182 SHIEQIRDLNEQIFKYELGGTKANDLRDRRNLLVDELSKMIDITVNEDIDGHFSVKMGDK 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV- 282 + ++ E +E++ + + ++ + + G+++ + IRD + Sbjct: 242 ELVNHFDMHELEIEPRAVGEKLNEADVDGLLKIMWDGADITADITGGQLRGYIDIRDGIG 301 Query: 283 ------------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 VP + + +E A+ + F+E+ + + Sbjct: 302 PAAVGDQNETVGVPYYMAKWNEWAKAFVTEFNEQHKAGYGLNDATDKLFFEPADAAGWT- 360 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + D ++ G +K F Sbjct: 361 --------------AKDMKVSSDIDDLNNIAASATSGEPGNNGNALALLQIRDKAIAFTG 406 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +G + +Y + I L + + + Q + I + GV L EEL Sbjct: 407 QSG-----SFEDYINSLISTLGVDSQQAIRMVDNEQALIGQIEGKRQSISGVLLDEELMN 461 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++K +QSYN + ++I D+ML L+ V Sbjct: 462 MVKFQQSYNAAARVITAMDEMLDVLVNRV 490 >gi|295401181|ref|ZP_06811154.1| flagellar hook-associated protein FlgK [Geobacillus thermoglucosidasius C56-YS93] gi|294976774|gb|EFG52379.1| flagellar hook-associated protein FlgK [Geobacillus thermoglucosidasius C56-YS93] Length = 530 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 71/524 (13%), Positives = 160/524 (30%), Gaps = 47/524 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ NI NA+ Y R+ Sbjct: 3 STFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D +S +G A E + ++ + + Sbjct: 63 QMGTGVEAGSIQRIRDSFLDYQYRNEASKLGYWSARSEAIAKMEDIM-NEPSEFGLSKAM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ +SL+ S N + V V ++FN ++++R D +EI+ + + Sbjct: 122 TQFWESLQDLSANPENEGARAVVRQRGIAVAESFNYLYNSLKQVRDDLGQEIKTGLLEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L +++ +ND IK + + +D D+RD L+ ++S+ + + + ++G Sbjct: 182 SILKQISELNDQIKAIEPNGYLPNDLYDKRDALIDELSKYFQVKVETVPSGGNALDIAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD---- 280 V +D + +F D + + + + Sbjct: 242 IYEISLVNQDGSTIGKIVTKNGYSKLSVFPDPTNPDAYVSEIRIEDALGNITTTISYDKF 301 Query: 281 -------------------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 P LD+MA F+E+ Sbjct: 302 NDLANGRIKSLIESYGYGSDPNNVKGYYPEMLADLDKMAYSFAKMFNEQHQKGYGLNGST 361 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 G D + + + S N L+ D+ Sbjct: 362 GKNFFDMTLSGPPTEKGAAATIKVHKDIMDNLSNIAASSNSGESGNGNNALYLSMIKDVQ 421 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + + + T+ T+ + + IG + + + + ++ + + Sbjct: 422 ITNGSATLPSGQPVSGSLPITSGTVQTFYQGLIGKIGADGQQAERMKTNAETLATSVDNK 481 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EE++ +IK + +YN + ++I D+ML ++ + Sbjct: 482 RQSVSSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINNM 525 >gi|304317611|ref|YP_003852756.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779113|gb|ADL69672.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 478 Score = 256 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 173/495 (34%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + Q NI NA+ Y R+ + Sbjct: 1 MSTFQGLEIAKTGLFASQQALNLTGHNISNANTPGYTRQVIDLSAIAPPTTYGMADQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R D+ ++ +G+ + E + ++ + T I Sbjct: 61 AIGGGVNVDGYRQIRDQYLDQQYRRENTTLGEWETKSDTLSAIEGIL-NEPSDTGITTVI 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +SL+ SKN + V +N + N+ + + + + IE + + Sbjct: 120 DNFFNSLQELSKNPESLEVRAVVRENGVSLTDTINSVYQHLDDKENELNSTIESRVQEIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N+ I + A+D DQR++L+ K+SEI+ I+T +N + + S Sbjct: 180 SYADRISKLNNEIYRFELTGQTANDLRDQRNLLVDKLSEIVNITTYEDSNKNFRIDISGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ + + P+ G ++ G +P Sbjct: 240 ALVDGSNAYTMSVDSTGTVKWDLAGTPVNPTGGILKGLLDMRDGDGTNGV------KGIP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ QL+++A + F+ + + G+ + + + Sbjct: 294 YYKEQLNKLAYNIATVFNAQHAAGYGIDGSTGVNFFNITDSTYDPTAEYAKN-------I 346 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + L D G + +L G I + + D T ++ Sbjct: 347 KVSSDILADDGLQKIAAASDPNSLPGDNTNILNLIS------LRDAKISGLNGGTFDDFV 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + I L + ++ + + + + + GV+L EE++ ++K ++SY S ++ Sbjct: 401 SSLISNLGVDAQQANMMQTNQSAMVKQVDYNRQSVSGVSLDEEMTNMLKYQKSYEASARM 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITVMDELLDTLINKM 475 >gi|312793870|ref|YP_004026793.1| flagellar hook-associated protein flgk [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181010|gb|ADQ41180.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor kristjanssonii 177R1B] Length = 527 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 81/540 (15%), Positives = 171/540 (31%), Gaps = 83/540 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRASALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++ +N I A+D DQR++L+ K+S+I+ + + +V + G Sbjct: 179 IALQIADLNKQIFILELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETVP------------------RDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL + + N S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSRIERNSGFESNGLPTQFNPDDPRSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV--------------------------VPIFQNQLDEMARVL 297 + G++K LL +RD V +P + N+L+E AR L Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDIKDEKGKIVVDVPNKNSFTGIPYYLNRLNEFARKL 358 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I F+E + + + I V+ ++ + + V Sbjct: 359 IEKFNELHKKGWSLNGQNKGINFF---EPPVGQKFFYARDIKVSDAIMNDLNNIATTYDV 415 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + N D I ++ ++ I L + Sbjct: 416 NNLPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQG 460 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + +V+ + GV++ EE++ LIK + + S ++I D+ML T++ Sbjct: 461 AKNFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDTIVN 520 >gi|158321541|ref|YP_001514048.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii OhILAs] gi|158141740|gb|ABW20052.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii OhILAs] Length = 522 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 85/516 (16%), Positives = 175/516 (33%), Gaps = 39/516 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S F A++ + + N+ N + K Y R+ S Sbjct: 3 STFTGFTTAKSGLFASQRALDITGHNLANVNTKGYSRQRLEQVQSTPLKLAGGQGMLGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V D ++A G A E + ++ + T I ++ + Sbjct: 63 VDTTAIHQLRNEFLDYKYRDEATAFGYWDAKADGLAFIESIM-NEPSDTGITKVIDQMFE 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S SKN + V A + N + +++K+ D + E++ + ++ + + Sbjct: 122 SFHELSKNPNNITTRALVRQRATTFTNSVNHTYNQLEKMVVDYNFEVQSMVKSINTYGEQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-----NDMVVYTSDG 224 + +ND I +A+D DQR+VL+ ++S+I+ I + N + +V G Sbjct: 182 IARLNDQILRFEVDGSNANDLRDQRNVLIDELSKIVDIDVMEVTNPSTLGHKQMVIKVGG 241 Query: 225 TTLFETVPRDINFEKMNSYTV-----------TSESNPIFIDGVVVSSNQGSAVPKGKIK 273 L K N E + + G++ Sbjct: 242 KPLVYHNDFTGLEAKQNLKKPFDGMDKSIHIYDIEWADGTSFYKSENVDTDVDKIGGELG 301 Query: 274 ALLQIRDS------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA--DGIKD 325 A+L +RD VP + N+L++ +V +E + G GI Sbjct: 302 AILTMRDGKDGKNKGVPHYINELNKFVKVFANRINEIHLKGYGLDGEAGRAFFTAKGIST 361 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383 + + + + + + N+A +L+ + Sbjct: 362 PTGAATKDADGRVTSVDATVAGLGNINASNIRISLDIEDPNNIAASKEKNLLPNDGSIML 421 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 G+ T ++ ++ IG L + ++ V+ N I + + GV+ Sbjct: 422 DIVNLRHDQGMFTEGKPEDFIKSLIGTLGVEKEEAGRNADNQAVLLNEIDKKRMSISGVS 481 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EEL+ ++K + +YN S +++ D+ML L+ + Sbjct: 482 EDEELANMVKFQHAYNASARMMTTIDEMLDVLINRI 517 >gi|302390139|ref|YP_003825960.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani DSM 16646] gi|302200767|gb|ADL08337.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani DSM 16646] Length = 465 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 173/495 (34%), Gaps = 54/495 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + ++ N+ NA+ Y R+ + + Sbjct: 3 SSFFGIEIAKRALFAQQRAQENVSHNVANANTPGYSRQRPVMEATYTKPWAGMYTAAGAV 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V D +S++GQ + E + ++ + + + Sbjct: 63 QAGTGVRVADIVRIRDAFADMQYRDENSSLGQWSVQTDILRQVEAVF-NEPSDIGVSSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ +LE SKN + +TV + A + N A ++ +I D + I +++ + Sbjct: 122 TQFWQALEELSKNPEAIEIRETVKERAVTLADTVNHVATKLTEILDDINFRISVKVDEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ +N I+ + A D D+RDVLL +S+++ I+T N V Sbjct: 182 TLARQIADLNAQIQQMEITGITASDLRDKRDVLLDDLSKLVNINTYEDENGVFTVNVGGA 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++F+ D N + KG++K LL++RD V Sbjct: 242 ILVKGSDYEVMSFDGA--------------DIKWQVYNTPVNIAKGELKGLLELRDQKVK 287 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + + A+ L G F++ + PG L + + VN Sbjct: 288 TYLDSIKTFAQTLAGEFNKIHKSGYDLMGDPGEDFFIYNNSLSGSI-------LSVNQSI 340 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ + + + G D TL EY Sbjct: 341 LNDVKKIAAAQ--------DPDAVPGDNRNALKLADLKYMKLTTL-------GGTLDEYY 385 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + I L + S + + + + + E V+L EE+S +I + +YN + ++ Sbjct: 386 GSLIARLGIDSQQSIRMTESQEFMVSQLDEQRKAVSSVSLDEEMSRMIMYQHAYNAAARM 445 Query: 465 IMFTDKMLQTLLEGV 479 I D+ML T++ + Sbjct: 446 ITAIDEMLDTIVSRM 460 >gi|150388562|ref|YP_001318611.1| flagellar hook-associated protein FlgK [Alkaliphilus metalliredigens QYMF] gi|149948424|gb|ABR46952.1| flagellar hook-associated protein FlgK [Alkaliphilus metalliredigens QYMF] Length = 493 Score = 253 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 75/499 (15%), Positives = 170/499 (34%), Gaps = 34/499 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S + FN A + + + + NI NA+ Y R+ S Sbjct: 3 STFSGFNTATSGIFASQRSLDVVGHNIANANTPGYSRQRLEQAASTPMSLYGGKGMLGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + D +A+G + E + ++ + S +L Sbjct: 63 VDTVAIKQMRSEFLDFKYRDEVNALGYWETKEYGLEFIESIF-NEPSDTSVATVTDELFA 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E SKN V + N + ++++K+ D + +I +S++ + + Sbjct: 122 GFEELSKNPESITARTVVRERGIAFTNTMNQTYKQLEKLAKDVNSDINATVSSINSYADQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND---MVVYTSDGTT 226 + +N I A A+D D+R++L+ +S+++ + N+ +V +G Sbjct: 182 IAELNKQIYRFEADGSSANDLRDRRNLLIDDLSKLVNVEVRDVNDGYGSSKMVVQINGQP 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV---- 282 L + + + S KG++ ALL +RD Sbjct: 242 LVNHDQAYKLDATATKSSTFDDEINMTEIKWANGSVVNQDSLKGELGALLTLRDGTTKDN 301 Query: 283 --VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 +P + QL++ + + + + G+ D + I ++ + Sbjct: 302 KGIPFYIEQLNDFVGSFAKAVNGIHEDGLDLDGDEGVAFFTDGNTGDQITAKNIQISLEI 361 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + + G + + FD T Sbjct: 362 DRD---------PRKIAAATMGELGEPVVGDGSNALRLTELRHAQMSFDNGEFKG---TP 409 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 ++ + I L N ++ + ++ N I + GV+L EE++ +++ + +YN Sbjct: 410 EDFMISLIANLGVNTQEATRMASNQSILTNQIDRQRQSISGVSLDEEMANMVRFQHAYNA 469 Query: 461 SNKLIMFTDKMLQTLLEGV 479 S +++ D+M+ ++ + Sbjct: 470 SARMVTTMDEMIDVIINRM 488 >gi|83589598|ref|YP_429607.1| flagellar hook-associated protein FlgK [Moorella thermoacetica ATCC 39073] gi|83572512|gb|ABC19064.1| Flagellar hook-associated protein [Moorella thermoacetica ATCC 39073] Length = 486 Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 91/501 (18%), Positives = 189/501 (37%), Gaps = 44/501 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 FN A + + NI NA+ + Y R+ + T + Sbjct: 3 GTFFGFNTALRGMQAQQRGIYTTSHNIANANTEGYTRQQVVLTATPAYPVPAMNRPGGQG 62 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R D + + ++GQ + +Q E++ ++ + + Sbjct: 63 WQIGTGVDSQETRRLRDEFLDTQIRRETGSLGQWQQIQDVLQQVEVVF-NEPSDTGLSTL 121 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +S+ + + SKN + TV++ A + + F SA ++ +I+ D D+ IEL++ + Sbjct: 122 MSQFWAAWQELSKNAESSPVRTTVVETANALAEAFRHSAAQLNQIKDDIDQSIELKVKEV 181 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ +N IK A+ +D +DQRD+LL ++S+II S +D Sbjct: 182 NSLAQQIADLNGQIKNIVAAGDQPNDLMDQRDLLLDRLSKIIDFSVEKNMVTVNDEEIAD 241 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-----VVSSNQGSAVPKGKIKALLQI 278 G + + + ++ + D S G+IK L + Sbjct: 242 GQIKIKLGDQYLVNVDGTDGSIVNMVAAGTDDANKGKIFWEDSGDEIVPANGEIKGLQKA 301 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 R+ V + L+ +A L + +E+ + + G D D I Sbjct: 302 REDV-QTYLTNLNTLAGELAAAINEQHILGKDLTGASGEDFFVIGDDSDTITA----ANI 356 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 VNPQ ++ S + + + + N L + ++ + N Sbjct: 357 QVNPQIMADVSKIA--AAANDGGPGDGSNALAIAQLQHKLIENLD-------------NT 401 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 T +Y +N L + ++ + V+ + ++ + GV+L EE++ +++ ++Y Sbjct: 402 TFDDYYKNFTAKLGVDAHEATRMTTNQGVLVDQLTNRKESISGVSLDEEMANMLQYLRAY 461 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 S ++I D ML ++ G+ Sbjct: 462 EASARMITTLDSMLDKIINGM 482 >gi|312109475|ref|YP_003987791.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1] gi|311214576|gb|ADP73180.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1] Length = 534 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 78/529 (14%), Positives = 184/529 (34%), Gaps = 53/529 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ NI NA+ Y R+ Sbjct: 3 STFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D +S +G A E + ++ + + Sbjct: 63 QMGTGVEAGSIQRIRDSFLDYQYRNEASKLGYWSARSEAIAKMEDIM-NEPSEFGLSKAM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ +SL+ S N + V V ++FN + +IR D +EI+ + + Sbjct: 122 TQFWESLQDLSANPENEGARAVVRQRGIAVAESFNYLYTSLSQIRDDLGQEIKTGLLEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L +++ +ND IK + + +D D+RD L+ ++S+ + + + ++G Sbjct: 182 SILKQISELNDQIKAVEPNGYLPNDLYDKRDALVDELSKYFQVKVETVPSGGNALDIAEG 241 Query: 225 --------------TTLFETVPRDINFEKMNSYTVTSESNPIFI----------DGVVVS 260 + + ++ + + ++ + +S Sbjct: 242 IYEISLVNQDGSTVKIVTKDGYSKLSVDPPVDPVNDPTNPDGYVSEIRIEDALGNITTIS 301 Query: 261 SNQGSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 ++ + + G+IK+L++ P LD+MA F+ + + Sbjct: 302 YDKFNDLASGRIKSLIESYGYGSDPNNVKGYYPEMLADLDKMAYSFATMFNAQHREGYDL 361 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK-NLAG 370 N G+ + DN +G + +I V+ S+ + + + N L+ Sbjct: 362 NNSNGVDFFEMNV-SDNTTGKGAAASIKVSDVIMSDLGKIAASSNSEESGNGNNALYLSM 420 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 D+ + + V+ T+ T+ + + IG + + + + ++ + Sbjct: 421 IKDVQITNGSAALPSGSGTTVSVPITSGTVQTFYQGLIGKIGVDGQQAERMKTNAETLAT 480 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + V+L EE++ +IK + +YN + ++I D+ML ++ + Sbjct: 481 SVDNKRQSVSSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINDM 529 >gi|312877567|ref|ZP_07737526.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor lactoaceticus 6A] gi|311795642|gb|EFR12012.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor lactoaceticus 6A] Length = 522 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 79/535 (14%), Positives = 170/535 (31%), Gaps = 78/535 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + + Sbjct: 60 VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVVD 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRASALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+I+ + + +V + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL + S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV---------------------VPIFQNQLDEMARVLIGSFS 302 + G++K LL +RD V +P + N+L+E A+ LI F+ Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDSQAGVDVPNKNSFTGIPYYLNRLNEFAQKLIEKFN 358 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E + + + I V+ ++ + + V+ Sbjct: 359 ELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDVNNLPG 415 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N D I ++ ++ I L + + + Sbjct: 416 GN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAKNFA 460 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 +V+ + GV++ EE++ LIK + + S ++I D+ML T++ Sbjct: 461 ENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDTIVN 515 >gi|312127297|ref|YP_003992171.1| flagellar hook-associated protein flgk [Caldicellulosiruptor hydrothermalis 108] gi|311777316|gb|ADQ06802.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor hydrothermalis 108] Length = 525 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 80/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLEQIRDMFLDIQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSSVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V + + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRGQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+I+ + + +V + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL + N S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 + G++K LL +RD V +P + N+L+E A+ LI Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLSEDMTVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + S Sbjct: 359 KFNELHTQGWSLNGQNTSINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D I ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LIK + + S ++I D+ML L+ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVLVN 518 >gi|222529660|ref|YP_002573542.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor bescii DSM 6725] gi|222456507|gb|ACM60769.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor bescii DSM 6725] Length = 525 Score = 248 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 79/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGLGADVQSLEQIRDMFLDVQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSSVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A+ + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+I+ + + +V + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL N S+ N + G + + Q Sbjct: 239 TLVNHFTVYQLETDKSKIMRKSGFDSSGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 + G++K LL +RD V +P + N+L+E A+ LI Sbjct: 299 VLNIKSGELKGLLDVRDGVGGLDEDVSVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + S Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D + ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLKLRNDNSVFKEGKFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LIK + + S ++I D+ML ++ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518 >gi|312622116|ref|YP_004023729.1| flagellar hook-associated protein flgk [Caldicellulosiruptor kronotskyensis 2002] gi|312202583|gb|ADQ45910.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor kronotskyensis 2002] Length = 525 Score = 248 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 78/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLEQIRDMFLDIQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSSVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A+ + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+I+ + + +V + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL N S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 + G++K LL +RD V +P + N+L+E A+ LI Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDMVVNGQPVDVPNKNYFTGIPYYLNRLNEFAQKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + S Sbjct: 359 KFNELHTQGWSLNGQNTNINFF---EPPVGQTFFYARYIKVSDAVMNDLNNIATTYDASS 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D + ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLKLRNDNSVFKEGKFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LI+ + + S ++I D+ML ++ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIRYQHGFQASARMINAFDEMLDVIVN 518 >gi|332798814|ref|YP_004460313.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1] gi|332696549|gb|AEE91006.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1] Length = 459 Score = 248 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 68/490 (13%), Positives = 169/490 (34%), Gaps = 47/490 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S A+ + ++ N+ NA+ Y R+ + + Sbjct: 3 SSFLGIEIAKTALFANQRAQQTVAHNVSNANTPGYSRQRVILEATHTAYGMGANWQIGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V D+ +S++GQ + E + ++ + +++ Sbjct: 63 VKVSDVDRIRDEFTDRQYRNENSSLGQWNIQSDILKQVEAVF-NEPSDIGIASVLNEFWA 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 LE+ SK+ + +TV + + N + ++ I +D + I ++++ + ++ Sbjct: 122 GLETLSKDAASQEARETVKEKGITLANTINHAVTQLNDIVSDINYRISIQVNEVNSIANQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I+ A D D RD+LL ++S ++ + N + + Sbjct: 182 IAQLNLQIRQAETGGASAADLKDSRDLLLDQLSNLVQFESYEDENGIFSINVGGAILVKG 241 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ F+ + + + KG++K L+++RD + + +Q Sbjct: 242 PDSANMEFDTSVANGT----------IKWKEYSSDVRILKGELKGLIELRDDKLENYLDQ 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD+ + F+ N + G+ + + + +S + + Sbjct: 292 LDKFTQTFADEFNAIHETGYNLDGETGIKFFEYANGVLSVNPDIVSNPSKIAAAEEED-- 349 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + K D N T+ +Y I Sbjct: 350 -----------------GIPSDNRIALELANLRYKTISID-----GRNCTIDDYYGTIIA 387 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + ++ + + + E T V+L EE++ +I+ YN +++++ D Sbjct: 388 KIGVDSQEATRAADSQAFMVSQLDERRQMTSSVSLDEEMTKMIQYLHGYNAASRIVTTVD 447 Query: 470 KMLQTLLEGV 479 +ML T++ + Sbjct: 448 EMLDTIINRM 457 >gi|302871568|ref|YP_003840204.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor obsidiansis OB47] gi|302574427|gb|ADL42218.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor obsidiansis OB47] Length = 525 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 80/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSAVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A+ + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+I+ + + VV + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFVVQIAGGE 238 Query: 226 TLFETVPRDINFEKMN------------------SYTVTSESNPIFIDG----VVVSSNQ 263 TL + S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGQPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 + G++K LL +RD V +P + N+L+E A+ LI Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDVSVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + S Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASN 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D I ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LIK + + S ++I D+ML ++ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518 >gi|323706357|ref|ZP_08117922.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium xylanolyticum LX-11] gi|323534319|gb|EGB24105.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium xylanolyticum LX-11] Length = 478 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 75/495 (15%), Positives = 168/495 (33%), Gaps = 36/495 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + Q NI NA+ Y R+ + Sbjct: 1 MSTFQGLEIAKTGLFASQQALNLTGHNISNANTPGYTRQVIDLSAIAPPTTYGMADQWGK 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R D+ ++ +G+ + E + ++ + T + Sbjct: 61 AIGGGVNVDGYRQIRDQFLDQQYRRENTTLGEWETKSDTLSAIEDIL-NEPSDTGITTVL 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +SL+ SKN + V +N + NT + + + I+ + + Sbjct: 120 DNFFNSLQDLSKNPESLEVRAEVRENGISLTDTINTIYQHLDDQENQINSTIQSRVQQIN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +++ +N+ I + A+D DQR++L+ ++SEI+ I+T +N + V S Sbjct: 180 SYADQISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSEIVNINTYEDSNGNFRVDISGQ 239 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + ++ + + P+ G ++ G +P Sbjct: 240 ALVDGNNAYTMSIDNTGTIKWDLAGTPVNPTGGILKGLLDMRDGDGTNGV------KGIP 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ QL++ A L F+ + + G+ + N + + Sbjct: 294 YYEQQLNQFAYNLATVFNAQHAAGYGLDGSTGINFFNITDTTYNPTAEYAKNIQVSSDIL 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + S + + N+ L + N T ++ Sbjct: 354 ADDGLQKIAAASSASSLPGDNTNVLNLIALRDTKISGL-------------NNGTFDDFI 400 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + I L + ++ + + + + + GV+L EE++ ++K ++SY S ++ Sbjct: 401 SSLISNLGVDAQQANQMQTNQSTMVKQVDYNRQSVSGVSLDEEMANMLKYQKSYEASARM 460 Query: 465 IMFTDKMLQTLLEGV 479 I D++L TL+ + Sbjct: 461 ITVMDELLDTLINKM 475 >gi|196249402|ref|ZP_03148100.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16] gi|196211159|gb|EDY05920.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16] Length = 528 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 77/524 (14%), Positives = 172/524 (32%), Gaps = 49/524 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + NI NA+ + Y R+ Sbjct: 3 STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLEATTPFPTPGLNRPNIPG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D +S +G A E + ++ ++ + Sbjct: 63 QMGTGVEAASVERVREYFLDIQYRGENSKLGYWEARADAVAKMEDIM-NEPSDSGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S + + V VV+ F+ + + +IR D +I + ++ + Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLTQIRTDIGTQIGVTVTKIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209 L +++ +N I + + +D D+RD L+ ++S+ I I Sbjct: 182 SILDQISKLNAQIAEIEPNGYLPNDLYDERDRLVDELSKFIDIQVEKHPVGGNALPAAEG 241 Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + N + VY G T D + + T + + ++ S Sbjct: 242 TYDVYILNGNEKVYLVQGRTASSISFPDGSDVDDDGVRETPPDTGVGALDIGGTAVSFST 301 Query: 267 VPKGKIKALLQIRD-----------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 +P GK++ L++ + P LD++A F+ Sbjct: 302 LPNGKLRGLIEGYGYYENGVNGNVEGLYPEMLANLDKLAYTFGTLFNAVHEQGYGLNGNT 361 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 GL G+ ++ + + + + ++ G+ + + Sbjct: 362 GLAFFSGLDQVNGAAKTIALASDIDDLDNIAAATRDKESGNGNNAINLANVRSLLLSNTT 421 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 D + + + T+ T+ + IG L ++ + S+ + + E Sbjct: 422 VSLQDGISVDLA--SLGLPLTSGTIETNYQGWIGQLGVAGEQANRMKSNSETLRQSVEER 479 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EE+ +IK + +YN + + I D+ML ++ G+ Sbjct: 480 RQSVSAVSLDEEMMNMIKFQHAYNAAARQITAIDEMLDKIINGM 523 >gi|261420582|ref|YP_003254264.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC61] gi|319768252|ref|YP_004133753.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC52] gi|261377039|gb|ACX79782.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC61] gi|317113118|gb|ADU95610.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC52] Length = 531 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 71/527 (13%), Positives = 172/527 (32%), Gaps = 52/527 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S A+ + NI NA+ + Y R+ Sbjct: 3 STFHGLEAARRGMMAQQAALYTTSHNIANANTEGYTRQRVQLQPTPPFPTPGLNRPNIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D +S +G + E + ++ ++ + Sbjct: 63 QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S + + V VV+ F+ + + +IR D +I ++ + Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLAQIRTDIGTQIGTTVTEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---------NN 215 L++++ +N+ I + + +D D+RD L+ ++S+ + I Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLVDQLSQYMEIGVEKHPTGGNALPMAEG 241 Query: 216 DMVVYTSDG----TTLFETVPRDINFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSA 266 VY +G + ++F + ++ + + +++ S+ Sbjct: 242 TYDVYVMNGSAKVYLVQGRNAASVSFPDGSDVDGDGVKEMPPASGVNALNIGITAVSFSS 301 Query: 267 VPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 +P GK++ L++ + P + LD++A F+ Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLSNLDKLAYTFGTVFNAVHQQGYGLN 361 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 DGI + + + + + G+ + Sbjct: 362 GSTKRPFFDGIGAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + D + + ++ T+ + IG L + ++ + S+ + + Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKTNSETLRQSV 479 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 E + V+L EE+ ++K + +YN + + I D+ML L+ G+ Sbjct: 480 EEKRQSVSSVSLDEEMMNMVKFQHAYNAAARQITVIDEMLDKLINGM 526 >gi|146296674|ref|YP_001180445.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410250|gb|ABP67254.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 525 Score = 246 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 81/538 (15%), Positives = 170/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS A+ + N+ NA Y R+ Sbjct: 1 MS-FYGLEIARTGIYVNRKGLEVTSHNVANASTPGYTRQVLNVKSIPPSNRVGIYDPKFQ 59 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLVQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + SL+ SKN + V A+ + + ++++ ++++ + ++ +I + Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+II + + +V + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIIDTTAYEDKDGRFIVQIAGGE 238 Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263 TL + N S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 V G++K LL +RD + +P + N+L+E A+ LI Sbjct: 299 VLNVKSGELKGLLDMRDGIGGLNEDIVVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + V+ Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVSQTFFYARYIKVSDAIMNDLNNIATTYDVNN 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D I ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLRLRNDTSIFKEGRFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LIK + + S ++I D+ML ++ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518 >gi|56421672|ref|YP_148990.1| flagellar hook-associated protein FlgK [Geobacillus kaustophilus HTA426] gi|56381514|dbj|BAD77422.1| flagellar hook-associated protein 1 (HAP1) [Geobacillus kaustophilus HTA426] Length = 531 Score = 246 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 73/527 (13%), Positives = 169/527 (32%), Gaps = 52/527 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ + NI NA+ + Y R+ Sbjct: 3 STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLKATPPFPTPGLNRPNIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D +S +G + E + ++ ++ + Sbjct: 63 QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S + + V VV+ F+ + + +IR D +I ++ + Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLAQIRTDLGTQIGTTVTEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L++++ +N+ I + + +D D+RD L+ ++S+ + I + ++G Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLIDQLSQYMEIGVEKHPTGGNALPMAEG 241 Query: 225 T---------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 T + + D++ + + N + + G VS + Sbjct: 242 TYDVYVMNGSAKVYLVQGRTASVVSFSDGSDVDGDGVKEMPPDLGINTLDVSGTTVSFSS 301 Query: 264 -----------GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G G + I + P LD++A F++ Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLANLDKLAYTFGKVFNDVHQQGYGLN 361 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 DGI + + + + + G+ + Sbjct: 362 GSTNHPFFDGIGAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + D + + ++ T+ + IG L + ++ + S+++ + Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKSNSEILRQSV 479 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 E + V+L EE+ +IK + +YN + + I D+ML L+ G+ Sbjct: 480 EEKRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVIDEMLDKLINGM 526 >gi|39998134|ref|NP_954085.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens PCA] gi|39985080|gb|AAR36435.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens PCA] Length = 477 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 178/495 (35%), Gaps = 33/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+L++ + A++ NI N + Y ++ T+ T + V Sbjct: 1 MSILSLLDIAKSGITAQRLALEVTSENITNVNTPGYSKQTTVFTTATVSQERGFPLGNGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L + ++ G + + E + ++ + + + Sbjct: 61 RVAEIQRAYDDFLQMQLKSENTTKGWSDTVLASMTRAEQLF-NEFTTDGLGKSLQDFFSA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N + ++ +++ F + IR +A++ +E +++ L ++ Sbjct: 120 WQDLTANPQGQPERQAILARGQQLADQFKRVNSYLNDIRTEANQSLEGVTADVNDKLRKI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ IK A++ DQRD+ +++++E +GI+ + + + + V S G L Sbjct: 180 ASLNEQIKQIEVQGARANELRDQRDLAVRQLAEKVGITYMEQTDGTLNVSLSLGQPLVLG 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285 + + ++ G + + S +G++ LQ+RDS+V Sbjct: 240 KDAAVLSLQPDAANSGFYRIYSTAPGGKTAVDISSIVGGPGNGQGEMGGTLQVRDSLVNG 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 F LDE+A L + GL T+ Sbjct: 300 FLADLDELAYTLATEVNAVHSSGFGLTGSTGLDFFS------------TPATMAGYSGLG 347 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + ++ G F+K N+TL + Sbjct: 348 GISVAISNSNDIAAANADPSVGGTGNNTNAKDIASLFDKILPLS-----GGNMTLGGFYN 402 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +G + + ++ S+ V + + GV+L EEL+ LIK ++++ + KLI Sbjct: 403 SLVGKVGVSVQNAERSATLSEGVLKQLDNLRESQSGVSLDEELANLIKYQKAFEGAAKLI 462 Query: 466 MFTDKMLQTLLEGVK 480 +M+ +L V+ Sbjct: 463 NTGTEMMDVILGLVR 477 >gi|312135425|ref|YP_004002763.1| flagellar hook-associated protein flgk [Caldicellulosiruptor owensensis OL] gi|311775476|gb|ADQ04963.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor owensensis OL] Length = 525 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 80/538 (14%), Positives = 167/538 (31%), Gaps = 81/538 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + N+ NA Y R+ + Sbjct: 1 MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D S G+ + E + ++ + + I Sbjct: 60 VGMGADVQSLEQIRNMFLDMQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSAVID 118 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 SL+ SKN + V A+ + + ++++ ++++ + ++ +I + Sbjct: 119 HFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKIMEINS 178 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S++ +N I A+D DQR++L+ K+S+II + + VV + G Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIIDTTAYEDKDGRFVVQIAGGE 238 Query: 226 TLFETVPRDINFEKMN------------------SYTVTSESNPIFIDG----VVVSSNQ 263 TL + S+ N + G + + Q Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGQPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298 Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299 + G++K LL +RD V + + N+L+E A+ LI Sbjct: 299 VLNIKSGELKGLLDVRDGVGGLDEDLTVNGQPVDVPNKNSYPGISYYLNRLNEFAKKLIE 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+E + + + I V+ ++ + + S Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N D I ++ ++ I L + + Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGRFEDFLKSLISNLGVDSQGAK 460 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +V+ + GV++ EE++ LIK + + S ++I D+ML ++ Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518 >gi|269836594|ref|YP_003318822.1| flagellar hook-associated protein FlgK [Sphaerobacter thermophilus DSM 20745] gi|269785857|gb|ACZ38000.1| flagellar hook-associated protein FlgK [Sphaerobacter thermophilus DSM 20745] Length = 471 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 71/492 (14%), Positives = 157/492 (31%), Gaps = 46/492 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + NI NA+ + R+ + Sbjct: 4 TFGRLETLLRALQTQQRAVDVTNHNIANANTPGFSRQVAALGTTPPYTIPTLSAPRVGQI 63 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 VTV++ + + D + +G + + + ++ + K Sbjct: 64 GTGVTVLSVQRIREGFLDVQYRTQAEQLGMSEAKTAIYRTLDTLL-NEPSETGLGAALDK 122 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + + +I+ A+ + FN +V + R +A + LE + + Sbjct: 123 FWAGWEEVANRPEHVPTRQALIEVAQTLAHRFNAMRNQVLQQREEAAHRLALEADRINQI 182 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ +N I+ A +D +D RD LL +++ IG +T V + + VY + G Sbjct: 183 AQQIASLNAQIRGVLAMGQQPNDLMDTRDQLLDQLARSIGTTTTVTPDGAINVYIA-GHA 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + D + T +E VS + V G L+++ + +P Sbjct: 242 LVDRDQTDALRVTFDPVTGNAELT-------WVSDGRSVDVTLGAAAGLIEMHNVALPGI 294 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 L+ + L+ + + + ++ + V P + Sbjct: 295 LGDLEALRDTLVAEVNARHQAGFGLTDTGPTPPGRDFFEILPN------GDLRVLPALTA 348 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 +PS L + ++ + + + + + T+ + Sbjct: 349 DPSLLAVASAPGVPGNADI---------------ALAIAGLAEELTMGSGTATINTFYET 393 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 I + + + + + + I GV+L EE LIK + +Y + + + Sbjct: 394 FIARVGREAERAEADRVNQESLTRAIDRRRQEVAGVSLDEEAVNLIKYQHAYQAAARAMT 453 Query: 467 FTDKMLQTLLEG 478 D+ML L+ G Sbjct: 454 VVDEMLDKLING 465 >gi|298507071|gb|ADI85794.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens KN400] Length = 477 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 178/495 (35%), Gaps = 33/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+L++ + A++ NI N + Y ++ T+ T + V Sbjct: 1 MSILSLLDIAKSGITAQRLALEVTSENITNVNTPGYSKQTTVFTTATVSQERGFPLGNGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L + ++ G + + E + ++ + + + Sbjct: 61 RVAEIQRAYDDFLQMQLKSENTTKGWSDTVLASMTRAEQLF-NEFTTDGLGKSLQDFFSA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N + ++ +++ F + IR +A++ +E +++ L ++ Sbjct: 120 WQDLTANPQGQPERQAILARGQQLADQFKRVNSYLNDIRTEANQSLEGVTADVNDKLRKI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ IK A++ DQRD+ +++++E +GI+ + + + + V S G L Sbjct: 180 ASLNEQIKQIEVQGARANELRDQRDLAVRQLAEKVGITYMEQTDGTLNVSLSLGQPLVLG 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285 + + ++ G + + S +G++ LQ+RDS+V Sbjct: 240 KDAAVLSLQPDAANSGFYRIYSTAPGGKTAVHISSIVGGPGNGQGEMGGTLQVRDSLVNG 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 F LDE+A L + GL T+ Sbjct: 300 FLADLDELAYTLATEVNAVHSSGFGLTGSTGLDFFS------------TPATMAGYSGLG 347 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + ++ G F+K N+TL + Sbjct: 348 GISVAISNSNDIAAANADPSVVGTGNNTNAKDIASLFDKILPLS-----GGNMTLGGFYN 402 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +G + + ++ S+ V + + GV+L EEL+ LIK ++++ + KLI Sbjct: 403 SLVGKVGVSVQNAERSATLSEGVLKQLDNLRESQSGVSLDEELANLIKYQKAFEGAAKLI 462 Query: 466 MFTDKMLQTLLEGVK 480 +M+ +L V+ Sbjct: 463 NTGTEMMDVILGLVR 477 >gi|138896699|ref|YP_001127152.1| flagellar hook-associated protein FlgK [Geobacillus thermodenitrificans NG80-2] gi|134268212|gb|ABO68407.1| Flagellar hook-associated protein 1 [Geobacillus thermodenitrificans NG80-2] Length = 540 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 80/536 (14%), Positives = 177/536 (33%), Gaps = 61/536 (11%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ + NI NA+ + Y R+ Sbjct: 3 STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLKATPPFPTPGLNRPNIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D +S +G + E + ++ ++ + Sbjct: 63 QMGTGVEAASVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S + + V VV+ F+ + + +I+ D +I + ++ + Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLSQIQTDIGTQIGVTVTQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +++ +N I + + +D D+RD L+ ++S++I + T++G Sbjct: 182 SLAKQISELNKQIASVEPNGYLPNDLYDERDRLIDELSKLINVQVEKHPTGGNAPATAEG 241 Query: 225 T-----------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 T + + D + E + + + + G VS Sbjct: 242 TYDIYFLNGNEKVYLVQGGEFQSISFPDGQDVDGDKEHIKEMPPATGVTELQVGGTSVSF 301 Query: 262 NQGS--AVPKGKIKALLQIR--------------DSVVPIFQNQLDEMARVLIGSFSEKD 305 + P GK++ L++ + P N LD++A F+ Sbjct: 302 TSNNQVTFPMGKLRGLIEAYGYVSGQDSSGQPIVTGIYPDMLNNLDKLAYTFGKLFNAVH 361 Query: 306 PIAGNSENVPGLFIADG--IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 G+ DG + +S I ++ + G + L Sbjct: 362 EKGYGLNGETGVSFFDGLGQEAKGAAKTIRLSADIDDLANIAASTEEGKPGNGNNAINLA 421 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 NV ++ + I+ S + + T+ + IG L + ++ + Sbjct: 422 NVGSMLLSSNTISLIGTSATIQMSDLQLPLTSG--TIQTNYQGWIGKLGVDGQQANRMKN 479 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S V+ + E + V+L EE+ +IK + +YN + + I D+ML ++ G+ Sbjct: 480 NSDVLRQSVEERRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVVDEMLDKIINGM 535 >gi|297531376|ref|YP_003672651.1| flagellar hook-associated protein FlgK [Geobacillus sp. C56-T3] gi|297254628|gb|ADI28074.1| flagellar hook-associated protein FlgK [Geobacillus sp. C56-T3] Length = 531 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 75/527 (14%), Positives = 170/527 (32%), Gaps = 52/527 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ + NI NA+ + Y R+ Sbjct: 3 STFHGLEAARRGMMAQQAALYTTSHNIANANTEGYTRQRVQLRPTSPFPTPGLNRPNIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D +S +G + E + ++ ++ Sbjct: 63 QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTT 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S + + V VV+ F+ + + +IR D +I ++ + Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLTQIRTDIGTQIGTTVTEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209 L++++ +N+ I + + +D D+RD L+ ++S+ + I Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLVDQLSQYMEIGVEKHPTGGNALPMAEG 241 Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + N VY G T D + + ++ + V ++ S+ Sbjct: 242 TYDVYVMNGSAKVYLVQGRTASVVSFSDGSDVDGDGVKEMPPASGVNTLDVSGTTVSFSS 301 Query: 267 VPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 +P GK++ L++ + P LD++A F++ Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLANLDKLAYTFGTVFNDVHQQGYGLN 361 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 DGI + + + + + G+ + Sbjct: 362 GSTNHPFFDGISAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + D + + ++ T+ + IG L + ++ + S+ + + Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKTNSETLRQSV 479 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 E + V+L EE+ +IK + +YN + + I D+ML L+ G+ Sbjct: 480 EEKRQSVSSVSLDEEMMNMIKYQHAYNAAARQITVIDEMLDKLINGM 526 >gi|78044505|ref|YP_359818.1| flagellar hook-associated protein FlgK [Carboxydothermus hydrogenoformans Z-2901] gi|77996620|gb|ABB15519.1| flagellar hook-associated protein 1 [Carboxydothermus hydrogenoformans Z-2901] Length = 473 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 72/491 (14%), Positives = 171/491 (34%), Gaps = 44/491 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------ISPE 48 A + NI NA+ Y R+ Sbjct: 5 SLETALSSLRAQQLALDITSHNIANANTPGYTRQRVNFAPNTPFPVPSLFAPMQPGQVGT 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + D +G +++ ++ + + + Sbjct: 65 GVVVASIERVRDTFMDIEYRKELMNLGYWETRFDVLDKIQLI-INEPSDTGLNQLMDRFW 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ + SKN V A+ +V+ FN ++ ++ D D ++ + + Sbjct: 124 NAWQELSKNPENLATRAVVQQTAKALVETFNHLRGQLDSLQNDFDFAVQANVEEINSIAR 183 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +ND I K +A+D +DQRD LL K++++I + I + + + + Sbjct: 184 QIRDINDQIFKTNIVKFNANDLMDQRDELLNKLAKLIDFTLIDNQDGTISIDIGGKKLVD 243 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++S V ++ F + KG++ A L RD V ++ Sbjct: 244 GL--------TVDSLKVEKNASGFFEVFWSDDTPVTITSQKGELAANLAARDVDVQAMKD 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD +A+ LI + + + N ++TI ++P+ +N Sbjct: 296 YLDSLAQTLIIETNNLHTQGY-------VLGSPMTNPGYNFFDGTDAKTIALSPEVSANL 348 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + G ++ +K + P + T ++ R I Sbjct: 349 NNIA----------AAKTPSPGDGEIALAIAQLKDKLTMTLPGSTTP-TATFNDFYRTII 397 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L + ++ ++ Q++ +++ + GV++ EE++ +I + +Y+ + +++ Sbjct: 398 SRLGVDAQEAERMYQNEQLLTKNLNNKRMESGGVSIDEEMANMILYQNAYSAAARIVTAI 457 Query: 469 DKMLQTLLEGV 479 D+M+ ++ + Sbjct: 458 DEMMDIVINRM 468 >gi|148266109|ref|YP_001232815.1| flagellar hook-associated protein FlgK [Geobacter uraniireducens Rf4] gi|146399609|gb|ABQ28242.1| flagellar hook-associated protein FlgK [Geobacter uraniireducens Rf4] Length = 478 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 86/495 (17%), Positives = 181/495 (36%), Gaps = 32/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ ++ + N NI N + Y R+ T+ + V Sbjct: 1 MSINSLLETGRTALNAQKLALEVTGENITNVNTTGYSRQTTILETAPTTLERGFPLGSGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + ++ GQ + S + + ++ + + S Sbjct: 61 KVAAVQRSYDGFLQTQIMGQNATYGQGKTSNSALQRVQQLF-NEFTTDGLGVSLQNFFKS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N + V+ +++V NF+ + +++D +K +E ++S++ L+++ Sbjct: 120 WQDLTVNPQGAPERQAVLSQGQQLVDNFHRINSNLNDVKSDMNKSLEGQVSDINDTLNQI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N IK A++ D+RD+LL+++S+ +GIS + + + + V + G +L Sbjct: 180 ATLNLQIKQIEVQSGPANEMRDKRDLLLRQLSQKVGISFVEQPDGMVDVSLTSGQSLVVG 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-----VPKGKIKALLQIRDSVVPI 285 N+ + G + N + +G+I L +RD++V Sbjct: 240 KDAAALSLLPNAANSGFYDILLTPPGGGPAVNATAFIGGPGNTQGEIGGALLVRDTMVNN 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++LDE+A L + Sbjct: 300 YLSELDELASTLASEVNGLHSAGYGLTAASTGLDFFAPPAAVAGYSGQG--------GIG 351 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N + + D + N I D F +A NVTL + Sbjct: 352 VNIAAISDVAAADADPTVNGTGNNKNAQSIASVYDKF--------LAMSAGNVTLEGFYD 403 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +G + + ++ +S + ++ + GV+L EEL+ LIK +++Y + KLI Sbjct: 404 SLVGKVGVDVQNAGRAESQSDGILKQLNNMRESASGVSLDEELANLIKYQKAYEGAAKLI 463 Query: 466 MFTDKMLQTLLEGVK 480 +ML T++ VK Sbjct: 464 NVGSEMLDTVINLVK 478 >gi|212640402|ref|YP_002316922.1| flagellar hook-associated protein FlgK [Anoxybacillus flavithermus WK1] gi|212561882|gb|ACJ34937.1| Flagellar hook-associated protein [Anoxybacillus flavithermus WK1] Length = 513 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 64/507 (12%), Positives = 142/507 (28%), Gaps = 30/507 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S + Q NI NA+ Y R+ Sbjct: 3 STFHGLETVRRGMTAQQQALYVTGHNIANANTPGYSRQRVNFEQTPPYPFASKNRPVMPG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V T + + D + G E + ++ + + Sbjct: 63 QMGTGVEGGTVQRMREQFLDVQYRGENMKYGYWHTRAEALYKMEEIM-NEPSDEGLAKTL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + SL+ + N S V V + F+ + ++ IR D E+++ + + Sbjct: 122 DRFWQSLQDLAVNPSNSGARSVVRQRGMAVAETFHYLSSSLKSIRDDLKNELDVTVKAVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L +N I + +D D+R+ LL ++S+ + + ++ + ++G Sbjct: 182 SLARQLNDINKQISEVEVHGYLPNDLYDERNRLLDELSQYVNVKVTAVSSGGSSLKIAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 E V R + + + + + + Sbjct: 242 RFTVELVDRTGSTVIGTLVDGRLGQVNELQLSYQDNVTKTGPIVGFSLGNTPFSTFEHLK 301 Query: 285 IFQNQLDEMARVLIGSFSEKDPIA----GNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + S + + ++E Sbjct: 302 ENGKVGSLLYSYGYSEDGGTTTKGLYPEMLSNLNAMAKAFADTFNTVHSNGWSVAEIKNN 361 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------ 394 + P F D + F ++ +A + Sbjct: 362 ATAPSAKPFFTYDPNDPAGTFDIAQMIKDSLDNIAASATGQIGDGSNAQALAEVKNGTMN 421 Query: 395 --NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 T+ + + IG + N ++ L S+V+ + E V+L EE+ ++ Sbjct: 422 IAGNTTTIQNFYESLIGQMAVNAQEAKRLSENSEVLRQSVDERRMAVSSVSLDEEMMNMM 481 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K + +YN S ++I D+ML ++ + Sbjct: 482 KFQHAYNASARMITMIDQMLDKIINNM 508 >gi|239828340|ref|YP_002950964.1| flagellar hook-associated protein FlgK [Geobacillus sp. WCH70] gi|239808633|gb|ACS25698.1| flagellar hook-associated protein FlgK [Geobacillus sp. WCH70] Length = 541 Score = 243 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 76/535 (14%), Positives = 167/535 (31%), Gaps = 58/535 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ N+ NA+ Y R+ Sbjct: 3 STFHGLEAAKRAMMTQQAALYVTGHNVANANTPGYTRQRVNFVQTEPFPSPGLNRPQIPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ +G A E + ++ +N + Sbjct: 63 QMGTGVKAGSVERVREYFLDIQYRGENNKLGYWEARADAIAKMEDIM-NEPSDNGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +L+ S N + V VV+ F+ + + +I+ D +I + I+ + Sbjct: 122 DQFWQALQDLSVNPENEGARSVVRQRGLAVVETFHYLSNSLSQIQTDIGTQIGVTITQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +++ +N I + + +D D+RD L+ ++S++I + T++G Sbjct: 182 SLAKQISEINQQIASVEPNGYLPNDLYDERDRLIDELSKLINVQVEKHPTGGNAPATAEG 241 Query: 225 T-----------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 T + + D + E + + + + G +S Sbjct: 242 TYDIYFLNGNEKVYLVQGGDFQSISFPDGQDVDGDKEYIKEMPPVTGVTELQVGGTSISF 301 Query: 262 NQGS---AVPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEK 304 + P GK++ L++ + P N LD++A F+ Sbjct: 302 TDNNNQVTFPMGKLRGLIEAYGYVSGQDSNGQPIVAGIYPDMLNNLDKLAYTFGKLFNAV 361 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 G+ DG+ + I + ++ S + Sbjct: 362 HEKGYGLNGETGVSFFDGLGQEAKGAAKTIRLSADIDDLANIAASTEEGKPGNGNNAINL 421 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + T+ T+ + IG L + ++ + Sbjct: 422 ANVGSMLLSADTVSLIGTTNTIQISTLNLPLTSGTIQTNYQGWIGKLGVDGQQANRMKNN 481 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S V+ + E + V+L EE+ +IK + +YN + + I D+ML ++ G+ Sbjct: 482 SDVLRQSVEERRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVVDEMLDKIINGM 536 >gi|121535557|ref|ZP_01667365.1| flagellar hook-associated protein FlgK [Thermosinus carboxydivorans Nor1] gi|121305885|gb|EAX46819.1| flagellar hook-associated protein FlgK [Thermosinus carboxydivorans Nor1] Length = 494 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 81/502 (16%), Positives = 176/502 (35%), Gaps = 41/502 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S + N ++ NI NA+ + Y R+ + Sbjct: 3 STFSGLNALTRGIYANQIALDTVGHNISNANTEGYSRQLASIVSTRPETLYGEYGPMQLG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + D+ +S++G + E + + ++ Sbjct: 63 TGAAVEAVTRARDSFIDRQFWQENSSLGYGETATEILSKIEGVFR-EPSEYGLQTVLNNF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + ++ S N S+D + E+V +A++++ + AD + +E++++ + + Sbjct: 122 WQAWQTLSTNASDDGARAALQQRGVELVNAIGHAAQQLKDMVADINSVVEIKVNKVNQIT 181 Query: 168 SELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 SE+ +N I D A+D D+RD+L+ ++S ++G++ + +V T + Sbjct: 182 SEILSLNKQIALIETGGRDHANDLRDRRDLLVDQLSTLVGVTVTEDKYGNYIVRTGNVLL 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK---------GKIKALLQ 277 + ++ E + G V S ++ G+IK LL Sbjct: 242 VDGNTRNELGVVSQKDSDYGYEVYNVVYGGTVPSGSRFMQGGTAVVFPEGNKGEIKGLLA 301 Query: 278 IRDSV-VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 +RD+ V + ++L M++ + F+ + + Sbjct: 302 MRDATGVKGYLDKLATMSQFFLTDFNSLHRDGYGLADTATGNDFFVTGGASPATKAEYLQ 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 S + D ++ + + +G + + D Sbjct: 362 AFT--------SSTIVDTALIAARSDVAMGVASGDHAVALSNLLKTVTSPTLD------- 406 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 N TL Y IG L D+ L + + + I + GVN+ EE++ +I+ +Q Sbjct: 407 NATLDSYYNAFIGKLGVQSQDAKRLAENQKTLVSQIRNWRESVAGVNMDEEMTNMIRYQQ 466 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 YN + +++ D+ML L+ G Sbjct: 467 GYNAAARVVTAIDEMLDKLING 488 >gi|317121043|ref|YP_004101046.1| flagellar hook-associated protein FlgK [Thermaerobacter marianensis DSM 12885] gi|315591023|gb|ADU50319.1| flagellar hook-associated protein FlgK [Thermaerobacter marianensis DSM 12885] Length = 520 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 69/526 (13%), Positives = 163/526 (30%), Gaps = 65/526 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S A+ + NI NA+ + Y R+ + Sbjct: 3 STFFGLELARLGLWAQQRALDVTGHNIANANTEGYSRQVARLSPTPAYAPPSLAMAAEAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + D+ + +G+ ++ A E + + + + Sbjct: 63 QVGTGVQVAEIQRVRDLFLDRQARDLKAHLGRWQVRSQTLAELETILG-EPSDAGLARAL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + D+L + + I A +++ F T+ R++ + + D + + + Sbjct: 122 ADFWDALATVANRPDSLPARTAAIQQAHTLLERFQTADRQLADLADNLDASLVARVDRVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223 + L ++ ++ I+ TA+ +D LD+RD LL+++ ++ + R + + V + Sbjct: 182 QILVQMADLHRRIRVATAAGQTPNDLLDERDRLLEELGTLLPVRVTERPDGTVRVEVAGL 241 Query: 224 ----GTTLFE----------------------------TVPRDINFEKMNSYTVTSESNP 251 G + + S Sbjct: 242 PLVDGQVVHRLAVQEEPAGGAGGGGTGSGTSGGLVVRIYWDGTATVPASATPQAVSGPGA 301 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + + G+I LL+ RD +V + L + L + + Sbjct: 302 SGGAAAAFIPLDDTVLDGGEIDGLLEARDRLVAGLRQDLKALFFALADAVNAVHRQGYGL 361 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + P D + + S L+ + A Sbjct: 362 NDGPPAGSGQQGAGRDLFVV--------------GSGSDLQQVVVNPELDDPANLAAAQM 407 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 P ++ + + + + +Y + + L + + +Q++ + Sbjct: 408 PGAPGDGRNALAMVQLRHAPLNLPGSPSAQDYLESVVAGLGIAGRQAEEGQRTAQLLLDQ 467 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ + GV+L EE++ LI+ + +Y + +L+ D ML L+E Sbjct: 468 VAAQRESVRGVSLDEEMTQLIRYQHAYAAAARLVTAVDTMLGILIE 513 >gi|288554150|ref|YP_003426085.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4] gi|288545310|gb|ADC49193.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4] Length = 523 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 78/518 (15%), Positives = 173/518 (33%), Gaps = 42/518 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + NI NA+ Y R+ T + Sbjct: 3 STFHGLETARRAMMTQQYALHTTGHNIANANTPGYSRQRVNFTQAEPYPSIGMNRPMLPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + ++ D S G + E + ++ + + Sbjct: 63 HLGTGTKAGSIQRVREHFLDIQFRNEQSKTGYWSTRHTGLQKMEDIL-NEPSTDGIASTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + ++L+ S + + V + V + FN + + I+ D EI ++ Sbjct: 122 DRFWNALQDLSTDPQDSGARSVVRERGVAVAEVFNYVSNSLTIIQKDLKGEIGVQEKAFN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ +N+ I + +D D+RD L+ ++S+ + + + ++G Sbjct: 182 SILDQIKNINEEISKVEPHGYVPNDLYDRRDNLIDELSQYVNVKIDRIESGGNASSVAEG 241 Query: 225 ---------------TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 TL + +N+ ++ E + S + + Sbjct: 242 AYNVRLVDSDGKDLGITLIDGANHSVNYLSIDFAGTNGEGLVENLSFGGNSMSVAEFESR 301 Query: 270 GKIKALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 G IKA+++ V P + LD+M + F++ N E Sbjct: 302 GSIKAIIESFGYMDGGAEKGVYPEMLHDLDQMVATFVEEFNKVHRAGWNLE-DIEAGEKG 360 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + G S T S D + S K + G + + Sbjct: 361 PSLNFFTYSGTGASPTSDQPAGAASRLQLSADIMTSSNKIAAAKPGVDGVAFVGSGANAL 420 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 N + TN ++ + ++ IG + + ++++ + + ++ N + E + Sbjct: 421 ELANVKDKTLNYGGTNTSVQSFYQSVIGDMAVHTNEANRMMRNADMLRNTVEERRQSVSS 480 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L EE++ +IK + +YN + + I D+ML ++ G+ Sbjct: 481 VSLDEEMTDMIKFQHAYNAAARNITMVDEMLDRIINGL 518 >gi|319650643|ref|ZP_08004783.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2] gi|317397824|gb|EFV78522.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2] Length = 518 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 74/522 (14%), Positives = 166/522 (31%), Gaps = 55/522 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + NI NA+ Y R+ + Sbjct: 3 STFMGLETARRGMFTQQSALYTTGHNISNANTPGYTRQRINFSQTEPYPGAGLNRPQIPG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D S+ +G + E + ++ N + Sbjct: 63 QMGTGVEAGSVQRIREGFLDMQYRTESTKMGYYGAMSESLTKMEEIM-NEPSENGLHSTL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K ++++ S + V + V N + +++ D +I ++ + Sbjct: 122 EKFWNAIQDLSSHTENTGARDVVAATGQMVADTLNYYYNSLTRVQEDIGSQINVKADEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV------------- 211 ++++ +N I + +D DQRDVL+ +S+++ + Sbjct: 182 AIVAQIDNLNKQISSVEPHGYLPNDLYDQRDVLVDNLSKLVNVKVSKVIPDNYGNAQKIA 241 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG------VVVSSNQGS 265 ++ + DG + + ++ V DG + + Sbjct: 242 DGLYNIEIVQQDGKSFEPPIQLVPVTKEAGIMDVNKLEVEKSSDGFISGLKIGSETINDF 301 Query: 266 AVPKGKIKALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + G++ L++ V P ++L++M F++ Sbjct: 302 SKLSGELAGLVKSFGYESGGEAKGVYPEMLDKLNKMTEAFAKEFNKIHREGFPLGADEPS 361 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + N ++I V + + S + G + + L + Sbjct: 362 GLDFFEFTAGNAA-----QSIKVKQEILDDSSKIAAGAASGAS-----GDNGNAQLLADL 411 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 SF+ P N N +L Y IG L + + S ++ + ++ Sbjct: 412 RKKSFSSYESLSPEEKANLNGSLDSYYSGLIGRLGVDSQSAQKDLRNSAILAASVEQNRQ 471 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EE++ +IK + +YN S + I D+ML ++ G+ Sbjct: 472 SVSAVSLDEEMTNMIKFQHAYNASARNITVVDEMLDKIINGM 513 >gi|85859203|ref|YP_461405.1| flagellar hook-associated protein 1 [Syntrophus aciditrophicus SB] gi|85722294|gb|ABC77237.1| flagellar hook-associated protein 1 [Syntrophus aciditrophicus SB] Length = 463 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 83/490 (16%), Positives = 183/490 (37%), Gaps = 38/490 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS++ + + + ++ NI N + Y R+ + + V Sbjct: 2 MSIIGILDTTKLALSSFQAAIDITGSNISNVNTPGYSRQRPVFSSVGSIDVRAAKIKVGV 61 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V N ++ SS G L + E++ D+ + +++ ++ Sbjct: 62 EVSDVERIYNNFLRDQINERSSVTGYYEALSTSLESVEIIF-DETSGSGINGLLNQFWNA 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 S N + +I +AE + + N ++ +R DA+ I+ + + +S + Sbjct: 121 WSDVSNNPEGQVERDALISSAESLCASINDYGNALESVREDAENNIQETVVEINNLISSI 180 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN I+ + + +++ D+RD L+++ I + + ++ + V+ +G L E Sbjct: 181 ADVNRKIREAGSEQGNSNILQDKRDEYLKELCSTINANYFIDSSGALNVFLPNGEPLVEK 240 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + I G S + + GKI ALL +RD +V +Q+ L Sbjct: 241 EFSWQLRLSSETSETNPPYHHITKVGS--SDSLDEVITGGKIGALLDVRDMIVKNYQDNL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D A L+ +++ + G D + Sbjct: 299 DSFAAGLVTQINDQHHQGYDQYKNIGSDFFDPTATDSKSM-------------------- 338 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 V+ + ++K +A ++ ++ + + D A +N T Y + IG Sbjct: 339 -----RVNSELAADLKKIAASSSILGDGANAVQISALKDNEAAMNGIFTFNNYVASLIGK 393 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + ++ +D+ +V + + GV++ EE+ LI+ + YN + +L ++ Sbjct: 394 IGQDVADAKTNVEHQNIVMSQLDRQREGISGVSIDEEMMKLIQYQMGYNAAGRLCSIINE 453 Query: 471 MLQTLLEGVK 480 ML TL+ + Sbjct: 454 MLDTLINLGR 463 >gi|226225705|ref|YP_002759811.1| flagellar hook-associated protein 1 [Gemmatimonas aurantiaca T-27] gi|226088896|dbj|BAH37341.1| flagellar hook-associated protein 1 [Gemmatimonas aurantiaca T-27] Length = 482 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 72/487 (14%), Positives = 179/487 (36%), Gaps = 18/487 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 +F+ A++ + +I N+ NA+ + R++ + + V V Sbjct: 3 SGLFSIARSALLSHQTALQTISHNVANAETPGFSRQEAVLAANTPVRLYNGNVGTGVHVA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + D + + G + + E + + ++ + + +S Sbjct: 63 TIQRKRDLLLDDNYRSANVLAGNSTMRRDLMQKVEDVFG-EPSETGMSNALDQFWNSWSD 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + V ++ Q FN ++ + R + ++ + + S++ + Sbjct: 122 LSAQPNSLAARAVVQQRGRQLGQLFNDYDTQLTQQRTSNLELLDNTVGRINALASQVAEL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + H A+D D RD+ L +++ + G + + N + V + T + Sbjct: 182 NTRILASEGNGHVANDLRDMRDLRLDELANVAGTRVVNQPNGTVTVVIGNSTLVEGDTWN 241 Query: 234 DINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + T + + + S A G++ A++++ + +P + +LD Sbjct: 242 KVSAQLEPPVPTPAVPLTDVPVKIRLGDSPDRLAPLDGQLSAIVKVLNEDIPATRGRLDA 301 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + + A G + + + + + Sbjct: 302 MASQIVTAVNTAHTAGYVFSGNTVPGTAAGNFFEAGTVTNPVRASNIKL-----DNAISA 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 D G ++ N G + + + + G + + + + R + L Sbjct: 357 DPGKIAASNDANGPTSNGTAQALAALRIA-DGTVTWTAPNGTTESGSFVGFFRGLVTRLG 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + ++D ++ + + GVN EEL +++V+QSY + K+I D+ML Sbjct: 416 VDTASANDSAAVAENLVQQAEIRRQSVSGVNTDEELVNMLRVQQSYQAAAKMITAADEML 475 Query: 473 QTLLEGV 479 +TL+ V Sbjct: 476 KTLINLV 482 >gi|239834426|ref|ZP_04682754.1| flagellar hook-associated protein FlgK [Ochrobactrum intermedium LMG 3301] gi|239822489|gb|EEQ94058.1| flagellar hook-associated protein FlgK [Ochrobactrum intermedium LMG 3301] Length = 484 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 134/484 (27%), Positives = 240/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + NI A++ +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSSNIARANDPDYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S +L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EALFNRFIQSNSTASSSSILAGGLDRLSSLYSADNYSGSPSALIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N +++Q +R DAD+EI ++N+ L++ VN I Sbjct: 121 SALGDSVVSTAQSLANALNAGTKQIQSLRNDADREIADSVANINDLLAKFEKVNQEIVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + D D++DQRD +L+++S IGI+T++R +NDMV++ +G TLFET R ++FE+ Sbjct: 181 TRANRDVSDYMDQRDAILKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVSFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + +DGV ++ G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 TVLAPGISGKAVLVDGVPLNHETFDQPYGTGRLSGLLQLRDQIAPQYQMQLDEIARNLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY----RSNPSFLRDGG 355 F+E D ++ A + GI+ +I V+ + + LRDGG Sbjct: 301 MFAESDQTGVGADKTGLFSWAGSPDVPGAGMSAGIAGSIKVSSAFVASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +N++ AG+ + + ++F++ FDP G++ + +L++Y+ +SI WLE R Sbjct: 361 ANGPDYKYNIEGAAGFSERLRALNEAFSEPMAFDPATGLSASSSLIDYSASSISWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFSYNATVATQADAALSNANGVDMDTEMALLLDLEHSYQASSRVLTTISAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] gi|254040201|gb|ACT56997.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 480/480 (100%), Positives = 480/480 (100%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK Sbjct: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE Sbjct: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK Sbjct: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM Sbjct: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS Sbjct: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK Sbjct: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD Sbjct: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK Sbjct: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 >gi|42522141|ref|NP_967521.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus HD100] gi|39574672|emb|CAE78514.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus HD100] Length = 469 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 77/491 (15%), Positives = 163/491 (33%), Gaps = 34/491 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS + A+ + + N+ ++ NI N + + R+ + Sbjct: 1 MSKISAMMDTGKRSLMNSQTALQTVGHNIANKSTEGFSRQRVELQTNTPITEGNLQIGMG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 N +K + ++G Q + E + ++ N Y++ + Sbjct: 61 ARAGVVTRVNNPWLEKQIQREGMSMGFQDSRADALSRVEQIY-NEQNNKGLNQYMTDFFN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S S N V +++ + ++F +++ ++ D D +I+ + + + E Sbjct: 120 SFRELSNNPESLASRTMVRESSVALTKDFGRVVGQLKAVQEDLDGQIKTTVEEVNQLSKE 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N+ ++ A+D D+RD+LL+K+ E I IS + + V L Sbjct: 180 IASLNEKVQMVEVQGTPANDERDRRDLLLKKLGEKIDISWAEGRDGMVTVTAGRTAILVS 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + F S+N + G+I L +RD V+ Sbjct: 240 GIGSSELKARQT--DARDRVEVFFEGSGSTSANITEQITGGRIGGALDVRDKVIEDLLGH 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +D MA L + + G+ D + Sbjct: 298 VDNMAYTLAKEVNTAHIEGFDKSGRNGVLFFDMPDQVKGAASVIGLNK------------ 345 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 V + AG + N + TL +Y +G Sbjct: 346 --TVFNDVGRIATGAQPGAAGDNTVANVISALQYRQV------MDGGTSTLDDYYSTQVG 397 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + V + ++ + GV+L EE + +I+ +++Y+ S +LI D Sbjct: 398 QIGAVTQRAVKAQESQKNVISQLTNIRESISGVSLDEETTKMIEFQKTYDASARLIKTAD 457 Query: 470 KMLQTLLEGVK 480 +M T+L + Sbjct: 458 EMFDTVLNLKR 468 >gi|301168512|emb|CBW28102.1| putative flagellar hook-associated protein 1 [Bacteriovorax marinus SJ] Length = 487 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 171/491 (34%), Gaps = 17/491 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N + N + + + NI N + + Y R+ T + V V Sbjct: 1 MSDLLNIGRTGLNASKKSLETTGHNISNVNTEGYSRQRVNQTTNTPITKGGTVHGTGVRV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + N + +K L S E + +D + I+K +S Sbjct: 61 KSVTRINDDFINKRLEKAISNDRFFEQRAERMTQIEDIF-NDLDTDGLNQVINKFFNSFR 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + V D A VVQ+F + I A D+ ++ E+ ++ + L + Sbjct: 120 ELANQPENETIRSVVRDQANLVVQDFRRIQENLNSISAGIDENMKAEVIDINQTLEHIAN 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I+ A + D DQRD+ ++ +S+ + T VV TL Sbjct: 180 LNKKIQSLEAINEEVGDLRDQRDLAVRNLSKSFKVHTYQDEKGQYVVAAKGVGTLVTATQ 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDG---VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ ++ P D + G + +L ++R+ + +N+ Sbjct: 240 VQRLQIGTSNKENSTNGLPGSADIFFEGKPAHILTQKFQGGSLSSLAKVRNEEIVDIRNK 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +D++A L S + N P G + P + + Sbjct: 300 VDQIAYNLTKSVNAIHRRGY--VNRPLNVDEAGNVSSVDSKGLTTGINFFKEPTDPKDAA 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S K+ L N+ G P+ S + I + TL E+ ++G Sbjct: 358 LNMSLSSAVKEDLTNIVTALG-PNSPGDNRVSLAISKIQHERIVGDGESTLEEFYLQTVG 416 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + +++ + VGV++ EE + ++K + +Y S K++ D Sbjct: 417 KIGLEAGKAKLDSEQAEGLKAQAVSIRERLVGVSIDEEAANMVKFQHAYEASAKIMQTAD 476 Query: 470 KMLQTLLEGVK 480 +M +T++ + Sbjct: 477 EMFKTVIGIKR 487 >gi|226314925|ref|YP_002774821.1| flagellar hook-associated protein 1 [Brevibacillus brevis NBRC 100599] gi|226097875|dbj|BAH46317.1| flagellar hook-associated protein 1 [Brevibacillus brevis NBRC 100599] Length = 495 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 67/499 (13%), Positives = 163/499 (32%), Gaps = 32/499 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ + NI NA+ + Y R+ + Sbjct: 3 STFHGIEVSKRGLFAQQSALNTTGHNISNANTEGYSRQRVNMQATTGLPYVGMQASIEPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D G E + ++ + + Sbjct: 63 LLGTGVQATSIQRLREEFLDIQYRNEYKRQGYWDGRLETLEKLEGIM-NEPSDTGLQKVM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ + + +K+ ++ V + ++ V FNT +++++ D + + ++ + Sbjct: 122 DQMWQAWQDLAKDPTDTSARAVVRERSKAVADTFNTLTNHIKEVQTDLNNVVNVKSMEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ +N+ I + +D DQRDVLL K+S+++ + + V Sbjct: 182 SLGQQIANLNNQIANVVPHGYQPNDLYDQRDVLLDKLSKLVEVRATQSTAGMVNVTIEGR 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + S V + NP + G + LQ RD +VP Sbjct: 242 EFV----------TGITSQPVATVQNPATGMSDMTLGGAAFVPTTGYMAGTLQSRDQIVP 291 Query: 285 IFQNQLDEMARVLIGSFSEKDPIA---GNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 +LD +A L ++ + N + + Sbjct: 292 GMLKRLDVLAVNLTKEINDLHRAGRSLSDINNGTVQDLPFFVDANSLAANPASKNYPTSA 351 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INTNVTL 400 NP ++ +++ G K + + TL Sbjct: 352 SGIVINPEIMKSLDAIAAAQEEAGSTPVGNNKSALAIASIKFKVLAAGTGPNDLAESSTL 411 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 Y R +I L + ++ + S+++ + + GV++ +E++ ++K + +Y+ Sbjct: 412 DNYYRYTISQLGVDAQEAERNQLNSEMLVGTVDSQRQSVSGVSIDDEMAEMVKYQHAYSA 471 Query: 461 SNKLIMFTDKMLQTLLEGV 479 S +++ D++L ++ G+ Sbjct: 472 SARVMTSMDEILDKVINGM 490 >gi|221635454|ref|YP_002523330.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM 5159] gi|221158038|gb|ACM07156.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM 5159] Length = 468 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 74/493 (15%), Positives = 170/493 (34%), Gaps = 49/493 (9%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TIS 46 A + + NI NA+ + R+ Sbjct: 3 FRALETAFRGLMAQQRVVDTANHNIANANTPGFARQRVSLVPSMPYTVPAFNRSGLAGQV 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V V + +++FD S A+G+ L A E + ++ + + Sbjct: 63 GTGVLVASITRVRESVFDLQYRVQSQALGEASTLVDAYAQIEAVF-NEPTEAGLGTLLDR 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + ++ + ++ +A + N N R++ +++AD ++ L++S + Sbjct: 122 FWRAWQAVGNQPEDLAARAALVQDATTLATNLNRMRRQLTELQADTVTKLTLQVSEVNSI 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L +N I A+ +D +DQRD+LL K++ G + N + +Y G Sbjct: 182 AERLASLNQQIVAALATGQTPNDLMDQRDLLLDKLARFTGATIRPLPNGAVNIYL-GGYP 240 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + +++ T + + A+ +G ++ALL + ++V+P Sbjct: 241 LVDQDQWFPLSVQVSGGTASVLWQG---------TTSPVALERGSLQALLHLHNAVLPGL 291 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +L+++ L + ++PG + + V P + Sbjct: 292 VQKLEDIRDALANEVNTLHMTGYGLSDLPGPPPGRPFFRITAG------GELEVEPSLVA 345 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 +P + + G + + +K + + T+ ++ Sbjct: 346 DPQLIA---------AADAPGEPGNNAIARQIAELRSK------LVLNSGTATINDFYNT 390 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + + I + V+L EE++ LIK +Q+Y + + I Sbjct: 391 LVAEVGGASQTAQVTRDNQRALVEAIDRQRQEIMAVSLDEEMANLIKYQQAYGAAARAIT 450 Query: 467 FTDKMLQTLLEGV 479 D+ML ++ G+ Sbjct: 451 AVDEMLDRIINGM 463 >gi|78221659|ref|YP_383406.1| flagellar hook-associated protein [Geobacter metallireducens GS-15] gi|78192914|gb|ABB30681.1| Flagellar hook-associated protein [Geobacter metallireducens GS-15] Length = 477 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 177/495 (35%), Gaps = 33/495 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M++ ++ + ++ NI N + Y R+ T+ V Sbjct: 1 MAIQSILDIGKSSLIAQRLALEVTSENITNVNTPGYSRQTTVLATGITTMERGFPMGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + L ++ G + S E + +D + + ++ Sbjct: 61 KVADIQRAYDAFLQSQLSKENTDNGFGTAVLSSMKRTEQLF-NDLTTDGLGKAMQNFFNA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N + V+ +++V F + ++ +A+K +E S++ + ++ Sbjct: 120 WQDLTANPQGQPERQAVLSMGQQLVDQFQRINGYLNDVKNEANKSLEGLTSDVNDKIGQI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND IK A++ DQRD+L++++S +GI+ + + + V + G L Sbjct: 180 ASLNDQIKQIEIQGGHANELRDQRDLLVRQLSSKVGITYVENGDGTLSVSLTLGQPLVIG 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285 + + + G + + + +G++ LQ+RD+++ Sbjct: 240 DKAAKLSLEPDPGNSSYYKIMATSPGGNTAVDISTIAGGPGNAQGEMGGALQVRDTLING 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 F + LDE+A L + + GL + + Sbjct: 300 FLSDLDELAYNLANEVNSVHSASYGLTGTTGLNFFNPPAAMAG------------YSGKG 347 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + V+ + G + ++K +A N+TL + Sbjct: 348 GISLAISKTSDVAAADSDPLTGGTGNNKSASSIASIYDKV-----LATSGGNLTLEGFFN 402 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +G + + D+ +S + + + GV+L EEL+ L+K +++Y + KLI Sbjct: 403 SLVGKVGVSVQDATRRADQSGGILKQLDNLRESNSGVSLDEELANLVKYQKAYEGAAKLI 462 Query: 466 MFTDKMLQTLLEGVK 480 M+ T+L ++ Sbjct: 463 NVGSDMMDTILGLIR 477 >gi|17988504|ref|NP_541137.1| flagellar hook-associated protein FlgK [Brucella melitensis bv. 1 str. 16M] gi|225686884|ref|YP_002734856.1| flagellar hook-associated protein FlgK [Brucella melitensis ATCC 23457] gi|256042865|ref|ZP_05445811.1| flagellar hook-associated protein FlgK [Brucella melitensis bv. 1 str. Rev.1] gi|256261979|ref|ZP_05464511.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str. 63/9] gi|260564102|ref|ZP_05834587.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str. 16M] gi|265989300|ref|ZP_06101857.1| FlgK [Brucella melitensis bv. 1 str. Rev.1] gi|17984296|gb|AAL53401.1| flagellar hook-associated protein 1 [Brucella melitensis bv. 1 str. 16M] gi|225642989|gb|ACO02902.1| flagellar hook-associated protein FlgK [Brucella melitensis ATCC 23457] gi|260151745|gb|EEW86838.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str. 16M] gi|262999969|gb|EEZ12659.1| FlgK [Brucella melitensis bv. 1 str. Rev.1] gi|263091463|gb|EEZ15999.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str. 63/9] gi|326411302|gb|ADZ68366.1| flagellar hook-associated protein FlgK [Brucella melitensis M28] gi|326554591|gb|ADZ89230.1| flagellar hook-associated protein FlgK [Brucella melitensis M5-90] Length = 484 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDCTRQVQSLRNDADREIADSVANINDLLAKFEKANQNVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|52082076|ref|YP_080867.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC 14580] gi|52787465|ref|YP_093294.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC 14580] gi|319647943|ref|ZP_08002161.1| FlgK protein [Bacillus sp. BT1B_CT2] gi|52005287|gb|AAU25229.1| flagellar hook-associated protein 1 [Bacillus licheniformis ATCC 14580] gi|52349967|gb|AAU42601.1| FlgK [Bacillus licheniformis ATCC 14580] gi|317390284|gb|EFV71093.1| FlgK protein [Bacillus sp. BT1B_CT2] Length = 507 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 75/514 (14%), Positives = 159/514 (30%), Gaps = 53/514 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TI 45 A+ + + NI NA+ + Y R+ Sbjct: 5 TFLGLEIAKRGLSAQQSALSVTANNISNANTEGYSRQRVTFKASTPYPSVSRDSVGLAGQ 64 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + + + D ++ G E + ++ + ++ Sbjct: 65 MGTGVEIGSVERVRDSFLDYQYRTQNTKAGYYNAKVDAFNQMEGIM-NELNDTGLNKVLN 123 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 +S++ + N E V + V FNT + ++++ +I+ + + Sbjct: 124 SFWNSIQELTNNAHEPSAASVVAQKGQAVADTFNTLYESLTTVQSNLGDQIDQNVMTINS 183 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 LS+L +N+ I + + +D D+RD LL ++S ++ I + T++G Sbjct: 184 LLSQLNSLNEQIAKVEPNGYLPNDLYDKRDQLLDELSSMVNIKVSYAKTGGNPLATAEGI 243 Query: 226 TLFETVPRD------------INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 E + + E + + S KG + Sbjct: 244 VSIEVLDVNGQSLGKVLDGPNFTTETVKVNYDNDTGLVTGVSLGGTDIGIDSFTSKGSLL 303 Query: 274 ALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L++ + P LD MA F+ S PG + Sbjct: 304 GLIESYGYMSNGEEKGLYPEMLADLDTMALAFAKEFNAVHQSGFTSSGEPGGIFFEFTGG 363 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + S + + N NLA D Sbjct: 364 EAEPAKGAAGKIKVADEIMNSKGDKVAASLNGEASDNANATNLANVFTKKIQIGD----- 418 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 T+L+Y IG + +++ L ++ + N + + V+L Sbjct: 419 ----------KTTTVLDYYAGIIGEMGVKAQETNRLAKNTETLVNTAELNRQSVSAVSLD 468 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE+S +I+ + +YN + ++I D++L ++ G+ Sbjct: 469 EEMSNMIQFQHAYNAAARMITLQDEVLDKIINGM 502 >gi|23500853|ref|NP_700293.1| flagellar hook-associated protein FlgK [Brucella suis 1330] gi|161621181|ref|YP_001595067.1| flagellar hook-associated protein FlgK [Brucella canis ATCC 23365] gi|254699261|ref|ZP_05161089.1| flagellar hook-associated protein FlgK [Brucella suis bv. 5 str. 513] gi|254702382|ref|ZP_05164210.1| flagellar hook-associated protein FlgK [Brucella suis bv. 3 str. 686] gi|254711817|ref|ZP_05173628.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1] gi|254714886|ref|ZP_05176697.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1] gi|256015897|ref|YP_003105906.1| flagellar hook-associated protein [Brucella microti CCM 4915] gi|256059805|ref|ZP_05450000.1| flagellar hook-associated protein FlgK [Brucella neotomae 5K33] gi|260568715|ref|ZP_05839184.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40] gi|261216576|ref|ZP_05930857.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1] gi|261319446|ref|ZP_05958643.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1] gi|261323785|ref|ZP_05962982.1| FlgK [Brucella neotomae 5K33] gi|261749701|ref|ZP_05993410.1| flagellar hook-associated protein [Brucella suis bv. 5 str. 513] gi|261752945|ref|ZP_05996654.1| flagellar hook-associated protein [Brucella suis bv. 3 str. 686] gi|294852967|ref|ZP_06793639.1| flagellar hook-associated protein FlgK [Brucella sp. NVSL 07-0026] gi|23464517|gb|AAN34298.1| flagellar hook-associated protein FlgK, putative [Brucella suis 1330] gi|161337992|gb|ABX64296.1| flagellar hook-associated protein FlgK [Brucella canis ATCC 23365] gi|255998557|gb|ACU50244.1| flagellar hook-associated protein [Brucella microti CCM 4915] gi|260155380|gb|EEW90461.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40] gi|260921665|gb|EEX88233.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1] gi|261292136|gb|EEX95632.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1] gi|261299765|gb|EEY03262.1| FlgK [Brucella neotomae 5K33] gi|261739454|gb|EEY27380.1| flagellar hook-associated protein [Brucella suis bv. 5 str. 513] gi|261742698|gb|EEY30624.1| flagellar hook-associated protein [Brucella suis bv. 3 str. 686] gi|294818622|gb|EFG35622.1| flagellar hook-associated protein FlgK [Brucella sp. NVSL 07-0026] Length = 484 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 239/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|313903612|ref|ZP_07837002.1| flagellar hook-associated protein FlgK [Thermaerobacter subterraneus DSM 13965] gi|313466165|gb|EFR61689.1| flagellar hook-associated protein FlgK [Thermaerobacter subterraneus DSM 13965] Length = 533 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 66/539 (12%), Positives = 163/539 (30%), Gaps = 78/539 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S A+ + NI NA+ Y R+ Sbjct: 3 STFFGLELARLGLWAQQRALDVTGHNIANANTPGYSRQVARLAPTPAYAPPSRAMAVEAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + D+ + +G+ ++ A E + + + + Sbjct: 63 QVGTGVQVAGIQRVRDLFLDRQVRDLQGQLGRWQVRTQTLAELETILG-EPSDAGLARAL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + ++L + I A +++ F + R++ ++ + D I + Sbjct: 122 ADFWEALGVVANRPDSLPARTAAIQQAHTLLERFQEADRQLADLQRNLDASILARVDRAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223 + ++L ++ I+ TA+ +D LD+RD L++++ ++ + R + V + Sbjct: 182 QIATQLADLHRRIQVATAAGQSPNDLLDERDRLVEELGGLLPVRVTEREGGALRVEVAGL 241 Query: 224 ---------------------------------------------GTTLFETVPRDINFE 238 ++ + + E Sbjct: 242 PLVDGRVVHLLVVREEPVAATGAGTGGAGSPGGGPAPGDPGAGDLVVRIYWSGTAQVLAE 301 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + E G + + + G+I L+ RD +V + L + L Sbjct: 302 GTGTGALAGEPGAGTGAGPALLPLDDTVLEGGEIDGFLESRDRLVAGLRQDLKALFFALA 361 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + ++ + P A G + + T NP+ + Sbjct: 362 TAVNQVHRQGYGLNDAP----APGSQGGGAGRDMFLLGTGTDLQAVVVNPALDDPANLAA 417 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++ + + +Y + + L + Sbjct: 418 ALEAGAPGDG----------RNALALAQLRHAALALPGGAPAQDYLESVVAGLGIAGRQA 467 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +Q++ + ++ + GV+L EE++ L++ + +Y + +L+ D ML L+E Sbjct: 468 QEGQRTTQLLMDQVAAQRESVRGVSLDEEMTQLVRYQHAYAAAARLVTAVDSMLAVLIE 526 >gi|254695092|ref|ZP_05156920.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str. Tulya] gi|261215443|ref|ZP_05929724.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str. Tulya] gi|260917050|gb|EEX83911.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str. Tulya] Length = 484 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|306841277|ref|ZP_07473988.1| flagellar hook-associated protein FlgK [Brucella sp. BO2] gi|306288679|gb|EFM60010.1| flagellar hook-associated protein FlgK [Brucella sp. BO2] Length = 484 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 TVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLTGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|306845418|ref|ZP_07477992.1| flagellar hook-associated protein FlgK [Brucella sp. BO1] gi|306274161|gb|EFM55977.1| flagellar hook-associated protein FlgK [Brucella sp. BO1] Length = 484 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA +L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSILAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFERANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D ++LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSEYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 TVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +N + AG+ D + ++F++ +FD AGI+++ +L Y+ +S+GWLE R Sbjct: 361 ANGANYKYNAQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLTGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|149182549|ref|ZP_01861021.1| flagellar hook-associated protein [Bacillus sp. SG-1] gi|148849741|gb|EDL63919.1| flagellar hook-associated protein [Bacillus sp. SG-1] Length = 529 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 74/524 (14%), Positives = 158/524 (30%), Gaps = 48/524 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ N+ NA+ + R+ + Sbjct: 3 STFQGLETARRGMYTQQSALQVTGHNVANANTLGFTRQRINFEQTETYPPPAMNKPQIPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D ++ +G E + ++ ++ + Sbjct: 63 QIGTGVEAESVQRIRDSFLDVQYRGENNKLGYWETKAESLMKMEEIM-NEPSDSGLAKTM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 SL+ + N V + + F + + IR D EI + + Sbjct: 122 DMFWQSLQDLAVNPKNSGARSVVRQRGIALAETFQYLSNSLSTIRQDIKNEIGVTEKEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ VN I +D D+RD L+ +S+++ I + + ++G Sbjct: 182 SLLKQIHNVNKQIGDVEPHGMSPNDLYDERDRLIDDLSKLVNIKVTNQPSGGNSSPLAEG 241 Query: 225 TTLFETVPRD------------INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + V + N K+N + ++ N I + GK+ Sbjct: 242 KAVISLVDGNNRPIANLVHAKGYNEIKVNIPSTGTDVNVNSISIGSQNYEMEKFDADGKL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAG--------NSENVP 315 K L++ P ++LD +A F++ + Sbjct: 302 KGLIESFGYMDKNGDTAGTYPDMLSELDNLAFTFAKEFNKIHSAGMSPNEINNVDKNGDR 361 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 D + ++ Q S ++ + A D Sbjct: 362 NPVNKDILFFVNGDTNSLSESDRKGFSQRIGLSSEIKSSLDNIANADGSKPEEATTGDSS 421 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + N FD + Y IG + + ++ L S + + E Sbjct: 422 VLLQLTEVINKNFD-YGQNSQMANFRNYYEVLIGGMAVDAQNAVRLTDNSATLRQAVEER 480 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +T V+L EE++ +I+ + +YN S ++I D++L ++ G+ Sbjct: 481 RMSTSAVSLDEEMTNMIQYQHAYNASARMISLQDELLDKIINGM 524 >gi|254720774|ref|ZP_05182585.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13] gi|265985832|ref|ZP_06098567.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13] gi|306840135|ref|ZP_07472920.1| flagellar hook-associated protein FlgK [Brucella sp. NF 2653] gi|264664424|gb|EEZ34685.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13] gi|306404780|gb|EFM61074.1| flagellar hook-associated protein FlgK [Brucella sp. NF 2653] Length = 484 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 237/484 (48%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T+ + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 TVLTLGVAGKAVMVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +N + AG+ D + ++F++ +FD AGI++ +L Y+ +S+GWLE R Sbjct: 361 ANGANYKYNAQGAAGFSDRLRALNEAFSEPMVFDAAAGISSGSSLTGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|163845456|ref|YP_001623111.1| flagellar hook-associated protein FlgK [Brucella suis ATCC 23445] gi|163676179|gb|ABY40289.1| flagellar hook-associated protein FlgK [Brucella suis ATCC 23445] Length = 484 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + NI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSPNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|254691612|ref|ZP_05154866.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str. 870] gi|256256799|ref|ZP_05462335.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 9 str. C68] gi|260757243|ref|ZP_05869591.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str. 870] gi|260883047|ref|ZP_05894661.1| FlgK [Brucella abortus bv. 9 str. C68] gi|297250152|ref|ZP_06933853.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 5 str. B3196] gi|260677351|gb|EEX64172.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str. 870] gi|260872575|gb|EEX79644.1| FlgK [Brucella abortus bv. 9 str. C68] gi|297174021|gb|EFH33385.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 5 str. B3196] Length = 484 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 237/484 (48%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++ IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|153011507|ref|YP_001372721.1| flagellar hook-associated protein FlgK [Ochrobactrum anthropi ATCC 49188] gi|151563395|gb|ABS16892.1| flagellar hook-associated protein FlgK [Ochrobactrum anthropi ATCC 49188] Length = 484 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 238/484 (49%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A++ +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNIAGANDPDYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S +L + + D+Y+ SP+ I LRD+L++++ + S Sbjct: 61 EALFNKFIQSNSTASSSSILAGGLDRLSSLYSADNYSGSPSALIGDLRDALQTFAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N ++VQ +R DAD+EI ++N+ L++ +N I Sbjct: 121 SALGDSVVSTAQSLANALNAGTKQVQSLRNDADREIADSVANINDLLAKFEKINQEIVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + D D++DQRD +L+++S IGI+T++R +NDMV++ +G TLFET R ++FE+ Sbjct: 181 TRANRDVSDYMDQRDSILKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVSFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + +DGV ++ G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 TVLAPGIAGKAVLVDGVPLNHETFDQPYGTGRLSGLLQLRDQIAPQYQMQLDEIARNLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI----CVNPQYRSNPSFLRDGG 355 F+E D ++ A + GI+ TI + LRDGG Sbjct: 301 MFAESDQTGVGADKTGLFSWAGSPDVPGAGVSAGIAGTIKVSSAFVTSEGGSSLLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +N + AG+ D + ++F++ F+ VAG+ TN +L +Y+ +SI WLE R Sbjct: 361 ANGADYKYNSEGGAGFSDRLRALNEAFSEPMTFNSVAGLATNSSLTDYSSSSISWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + + + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 421 QKANSEFSYNATIASQADAALSNANGVDMDTEMALLLDLEHSYQASSRVLTTISAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|89895774|ref|YP_519261.1| hypothetical protein DSY3028 [Desulfitobacterium hafniense Y51] gi|89335222|dbj|BAE84817.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 533 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 65/528 (12%), Positives = 178/528 (33%), Gaps = 51/528 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S + A+ + + NI NA+ Y R+ + Sbjct: 3 STFSGLELARRALESQQIALDTTGHNIANANTIGYTRQVVNLQATSPDSIPGMGHYLSIG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 VTV + D+ +S ++ A E + ++ +NS ++ +++ Sbjct: 63 TGVTVQSIERARDIFIDRQFRWENSKQEYWATRENTLAQIEGLL-NEPSDNSLSNDLTQF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + N +++ A + + +++ + + D + ++I + + Sbjct: 122 WSAWSVLANNPENLGARSVILERAATLADTLHHIDQQITEAQKSLDSSVRVQIDQINSYA 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223 +++ +N IK + + +D LD+RD L+ +S+++ + + + + + Sbjct: 182 NQIQELNFQIKKVQITGDNPNDLLDKRDALIDDLSKLVNVRVVESRDPNFTDREVNIFKL 241 Query: 224 --------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVPKGKI 272 L + + + ++ G + Sbjct: 242 YIGNEKATNQILVDDTKAYQLETPAAAGASGEPFAEVKWGAGHPLGSGTSINLGEGSGAL 301 Query: 273 KALLQIR---------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 +A + +R ++ + ++Q +++A L + + + + L Sbjct: 302 QASILLRGSGFEYDTANGDTKANAHLAYLRDQYNQLANGLAEAVNAIHRTGIDRDGNSDL 361 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP----- 372 D ++ T+ +P + +D N + Sbjct: 362 DFFDTSGGTVTAANIKVNATLISDPWKIATGKVTKDADGNPVGAYGNGEIAKAISSLATG 421 Query: 373 -DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 ++ D + + P + ++ +Y ++ L + + + V+ H Sbjct: 422 WTGLDDLTDPVTGDPVTTPPLPPLSASSIGDYYGAALAELGVDAQQATRMKESQAVLVTH 481 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + VGVN+ EE++ L+K ++SY + +++ D ML T++ G+ Sbjct: 482 MYNQRQSVVGVNMDEEITNLVKFQKSYTAAARIVTMLDSMLDTIVNGM 529 >gi|237817501|ref|ZP_04596492.1| flagellar hook-associated protein FlgK [Brucella abortus str. 2308 A] gi|237787336|gb|EEP61553.1| flagellar hook-associated protein FlgK [Brucella abortus str. 2308 A] Length = 492 Score = 231 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 236/484 (48%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 9 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 68 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 69 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 128 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 129 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 188 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++ IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 189 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 248 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 249 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 308 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 309 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 368 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 369 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 428 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S+ ++ ML L Sbjct: 429 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSWVLTTVSAMLDDL 488 Query: 476 LEGV 479 L V Sbjct: 489 LNAV 492 >gi|254475034|ref|ZP_05088420.1| flagellar hook-associated protein FlgK [Ruegeria sp. R11] gi|214029277|gb|EEB70112.1| flagellar hook-associated protein FlgK [Ruegeria sp. R11] Length = 482 Score = 231 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 91/487 (18%), Positives = 186/487 (38%), Gaps = 18/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57 M++ + N A + A +Q + + N+ N Y RR T + V V + Sbjct: 1 MTITSALNSAMSGLTAAGRQTSVVSENLANVLTPGYSRRSVALTSAGDGFAGVRVNGVQR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 N + ++ +G ++ F + S T ++ +L Sbjct: 61 FNDPGLQASVRTANTELGVSKVQSDFYGRMVELVGKADDPYSVTQRLTDFDSALIEAISR 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + AEE+ ++ + +A ++ R AD+ I++++ + + L ++ +N I Sbjct: 121 PDSGPRLNDLSIQAEELARSISDAAEGLRNERTAADRAIDVQVETVNQSLEKIQKLNAKI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A+ D LDQRD+L+ +++EII + + R+ + +++ G L + P ++ F Sbjct: 181 AISQAAGADTVSLLDQRDLLIDQVNEIIPVKVVNRDRGQVALFSDGGAVLLDGQPAELTF 240 Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + I+G+ V + G + G + A ++RD + Q LD Sbjct: 241 DGKADTLPYMTLGNGLLSGLQINGIDVDTGPGGPLRGGSLAANFEVRDVLTVEAQEDLDA 300 Query: 293 MARVLIGSFSEK---DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +AR LI F + + + A + I V Q ++ Sbjct: 301 VARDLIERFQDPALDTTLGALDPGLFTDQGAFFDPANTVGIANRIELNDKVAMQGQAETW 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 LRD AG L+ Y D+ + + V N+ + N + Sbjct: 361 RLRD------GLNAAGPGNAGDASLLRAYTDALDTKRLVSSVGLGTANLDASTLSANLLS 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ + +Q + + GV+ EL LI +E+ Y + ++I D Sbjct: 415 RFAQSEYSAQQNVAFAQATHTEMQQRQLAQ-GVDSDAELQNLIVIEKVYQANARMISVVD 473 Query: 470 KMLQTLL 476 ++++TLL Sbjct: 474 ELMETLL 480 >gi|89100618|ref|ZP_01173476.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911] gi|89084642|gb|EAR63785.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911] Length = 527 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 68/528 (12%), Positives = 163/528 (30%), Gaps = 61/528 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------SPE 48 A+ NI NA+ + R+ Sbjct: 2 GLETARRGMFTQQSALYVTGHNIANANTPGFSRQRINFEQTSPYPAASMNRPQVPGQMGT 61 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + + D ++ +G + E + ++ + + K Sbjct: 62 GVEAGSVQRIREGFLDLQYRVEANKVGYYSSMSESLTKMEEIM-NEPSESGLHATMEKFW 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +SL+ + + + + V N + +++ D EI +++ + +S Sbjct: 121 NSLQDIASHTENTGARDVAAASGQMVADTLNYYYNSLSRVQQDIGSEIGVKVKEINGLVS 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +N I + + +D D+RD+ + ++S+++ I ++ L+ Sbjct: 181 QINALNKQIASVEPNGYLPNDLYDERDLYVDQLSQLVNIKVTNVKPDNYGHAKDISEGLY 240 Query: 229 ----------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ--------------- 263 P + + + + D ++ Sbjct: 241 KIEIVGDDGKSFSPAAVLLDVTKEDGLKDPNLLEVTDITDAANEDLELVSGLITEVRVGG 300 Query: 264 ---GSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 S G++ L++ P +L++ F++ + Sbjct: 301 AALPSMNFSGELSGLIKSYGYIDNSGNKAGFYPDMLQKLNDFTTAFAMEFNKIHESGFDL 360 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 PG + D ++ I VN ++ S + + + N Sbjct: 361 NGNPGKAFFE----FDPSQGDNPAQQIRVNKDILADSSLIAAAATSTGGSGDNDNAHELS 416 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + +K P + + N L Y IG L + + S V+ + Sbjct: 417 QIKTKAFGSFLSKGDAGFPASMTSGN--LDTYYSGIIGRLGVDSQSAQKNANNSIVLADS 474 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +S + V+L EE++ +IK + +YN + + I D+ML ++ G+ Sbjct: 475 VDKSRQSVSAVSLDEEMTNMIKFQHAYNAAARNITVVDEMLDKIINGM 522 >gi|147678447|ref|YP_001212662.1| flagellar hook-associated protein FlgK [Pelotomaculum thermopropionicum SI] gi|146274544|dbj|BAF60293.1| flagellar hook-associated protein [Pelotomaculum thermopropionicum SI] Length = 471 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 66/496 (13%), Positives = 162/496 (32%), Gaps = 48/496 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ N+ NA+ + R+ + S Sbjct: 4 STFFSLEISRRGLAAGQTGMEVSGHNVANANTPGFTRQRPVLAASDPYTMPSRGKPVAAL 63 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 VTV D + + ++G + + E + + + + Sbjct: 64 QVGTGVTVEHIERIRDGFLDGQIRTETGSLGNWETQRDALSEVETIFM-EPSDTGLNTLL 122 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S +S + SKN + ++ N+ + N + ++ ++ + + + I+++ Sbjct: 123 SNFWNSWQELSKNAENSPIRAALVQNSVSLANGLNHMYQMLETVKTNQRELANICINDIN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ +N I + +D LD+RD+LL +++ + + + V Sbjct: 183 SKARQIADLNKQIVNIKVAGDQPNDLLDRRDLLLDELARLTNFEVAENADGSIRVDIGTF 242 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD-SVV 283 + T I + + +P + G+++ + + + + + Sbjct: 243 NLVDGTDYSAIEPITGWTPPQPWDQSPY------------DQITSGQLQGIKDVLNKNKL 290 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + + LD +A LI + + GL T Sbjct: 291 QGYADDLDRLASTLITEINGLHSAGYGLDGSSGLNYF----------------TGTGASN 334 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 N + D V+ + G D ++ + + +T + Sbjct: 335 IAVNSDIINDLNKVAAASTGDADG-DGACDAPGDGSNALLIAQLQNKSIAGLGGITFGNF 393 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N L + +S + Q + + +S + GV++ EE++ LI+ + +Y + + Sbjct: 394 YKNLTARLGVDTQESSRMAENQQALVDQLSSRRESISGVSMDEEMTSLIQYQYAYQGAAR 453 Query: 464 LIMFTDKMLQTLLEGV 479 +I D+ML TL+ + Sbjct: 454 VITVLDEMLDTLINRM 469 >gi|281418802|ref|ZP_06249821.1| flagellar hook-associated protein FlgK [Clostridium thermocellum JW20] gi|281407886|gb|EFB38145.1| flagellar hook-associated protein FlgK [Clostridium thermocellum JW20] Length = 489 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 79/492 (16%), Positives = 180/492 (36%), Gaps = 26/492 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 A A++ + + N+ N + K Y R+ M T ++ Sbjct: 3 FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTGPYLNLMRYQIGLGASIQ 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R D + ++ +G + + D + + +++ ++ + Sbjct: 63 ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 SK + V AE +V N ++ K++ D +++I L I + ++ + Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + +A+D+ DQR++LL ++S++ N D+ V + + Sbjct: 182 NVKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287 E++N S+ N +F + N V G ++ LL+ R V + Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + ++ + + NS + K L N G + +NP Y Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 ++ +++ D + ++ A ++ V+L +Y + Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I + S++ + + N + +GV++ EE+S +++ + +Y+ S++ I Sbjct: 413 ILIVGTGGSEAKKTAENQRTLVNSAEAQRQSVMGVSMDEEMSNMMRYKFAYSASSRAINV 472 Query: 468 TDKMLQTLLEGV 479 D ML+T++ + Sbjct: 473 IDDMLETIITRM 484 >gi|62317956|ref|YP_223809.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 1 str. 9-941] gi|83269933|ref|YP_419224.1| flagellar hook-associated protein FlgK [Brucella melitensis biovar Abortus 2308] gi|189023207|ref|YP_001932948.1| flagellar hook-associated protein FlgK [Brucella abortus S19] gi|254698189|ref|ZP_05160017.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str. 86/8/59] gi|254731633|ref|ZP_05190211.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str. 292] gi|260544141|ref|ZP_05819962.1| flagellar hook-associated protein [Brucella abortus NCTC 8038] gi|260759392|ref|ZP_05871740.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str. 292] gi|260762636|ref|ZP_05874968.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str. 86/8/59] gi|12330681|gb|AAG52878.1| FlgK [Brucella abortus] gi|62198149|gb|AAX76448.1| hypothetical FlgK, flagellar hook-associated protein FlgK [Brucella abortus bv. 1 str. 9-941] gi|82940207|emb|CAJ13263.1| flagellar hook-associated protein FlgK, putative KO: K02396 flagellar hook-associated protein 1 FlgK [Brucella melitensis biovar Abortus 2308] gi|189021781|gb|ACD74502.1| flagellar hook-associated protein [Brucella abortus S19] gi|260097412|gb|EEW81286.1| flagellar hook-associated protein [Brucella abortus NCTC 8038] gi|260669710|gb|EEX56650.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str. 292] gi|260673057|gb|EEX59878.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str. 86/8/59] Length = 484 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 236/484 (48%), Gaps = 5/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++ IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S+ ++ ML L Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSWVLTTVSAMLDDL 480 Query: 476 LEGV 479 L V Sbjct: 481 LNAV 484 >gi|163738040|ref|ZP_02145456.1| Flagellar hook-associated protein [Phaeobacter gallaeciensis BS107] gi|161388656|gb|EDQ13009.1| Flagellar hook-associated protein [Phaeobacter gallaeciensis BS107] Length = 482 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 93/487 (19%), Positives = 188/487 (38%), Gaps = 18/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57 MS+ + N A A + + + N+ N Y RR T + V V + Sbjct: 1 MSITSALNSAMTGLTAAGRSTSVVSENLSNVLTPGYSRRSLALTSAGDGFSGVKVGHVQR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 N + + +S +G + +F + S T ++ L Sbjct: 61 INDPALQSSVRSANSEVGVAEVKSAFFGRMTELVGSADDPYSITQRLTDFDSGLIEVISR 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + AEE+V++ +A ++ R AD+ I++++ + + L +L +N I Sbjct: 121 PDSGPRLNDLAIQAEELVRSIADAAEGLRNQRTAADRAIDVQVDTVNQSLEKLQKLNAKI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 ++ D+ LDQRD+L+ ++++II + + R+ + +++ G L + +++F Sbjct: 181 AISQSTGSDSASLLDQRDLLIDEVNKIIPVKVVNRDRGQVALFSEGGAVLLDGQAAELSF 240 Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + I+G+ V++ G V G + A ++RD + Q LD Sbjct: 241 DGKADTLPYMTLGNGLLSGLQINGIDVATGPGGPVRGGTLAAQFEVRDVLTVEAQEDLDA 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSNPS 349 MA+ LI F + + PG+F G I + Q ++ Sbjct: 301 MAKDLIERFQDPALDPTLTATDPGIFTDQGAFFDPANTVGIANRIELNDKIAMQGQAETW 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 LRD AG L+ Y D+ + V N+ + N + Sbjct: 361 RLRD------GLNAASPGNAGDATLLRGYADALDAKRTVSSVGLGTANLDASTLSANLLS 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ + + + + + + GV+ EL LI +E+ Y + ++I D Sbjct: 415 RFAQSENSAEQNVAFAAATYTEMYQRELAQ-GVDSDAELQNLIVIEKVYQANARMISVVD 473 Query: 470 KMLQTLL 476 ++++TLL Sbjct: 474 ELMETLL 480 >gi|125974729|ref|YP_001038639.1| flagellar hook-associated protein FlgK [Clostridium thermocellum ATCC 27405] gi|125714954|gb|ABN53446.1| flagellar hook-associated protein FlgK [Clostridium thermocellum ATCC 27405] Length = 489 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 79/492 (16%), Positives = 181/492 (36%), Gaps = 26/492 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 A A++ + + N+ N + K Y R+ M T + ++ Sbjct: 3 FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTAPYLNLMRYQIGLGASIQ 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R D + ++ +G + + D + + +++ ++ + Sbjct: 63 ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 SK + V AE +V N ++ K++ D +++I L I + ++ + Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + +A+D+ DQR++LL ++S++ N D+ V + + Sbjct: 182 NVKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287 E++N S+ N +F + N V G ++ LL+ R V + Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + ++ + + NS + K L N G + +NP Y Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 ++ +++ D + ++ A ++ V+L +Y + Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I + S++ + + N + +GV++ EE+S +++ + +Y+ S++ I Sbjct: 413 ILIVGTGGSEAKKTAENQRTLVNSAEAQRQSIMGVSMDEEMSNMMRYKFAYSASSRAINV 472 Query: 468 TDKMLQTLLEGV 479 D ML+T++ + Sbjct: 473 IDDMLETIITRM 484 >gi|256005260|ref|ZP_05430227.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 2360] gi|255990811|gb|EEU00926.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 2360] gi|316941863|gb|ADU75897.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 1313] Length = 489 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 79/492 (16%), Positives = 180/492 (36%), Gaps = 26/492 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 A A++ + + N+ N + K Y R+ M T ++ Sbjct: 3 FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTGPYLNLMRYQIGLGASIQ 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R D + ++ +G + + D + + +++ ++ + Sbjct: 63 ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 SK + V AE +V N ++ K++ D +++I L I + ++ + Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + +A+D+ DQR++LL ++S++ N D+ V + + Sbjct: 182 NIKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287 E++N S+ N +F + N V G ++ LL+ R V + Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + ++ + + NS + K L N G + +NP Y Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 ++ +++ D + ++ A ++ V+L +Y + Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I + S++ + + N + +GV++ EE+S +++ + +Y+ S++ I Sbjct: 413 ILIVGTGGSEAEKTAENQRTLVNSAEAQRQSIMGVSMDEEMSNMMRYKFAYSASSRAINV 472 Query: 468 TDKMLQTLLEGV 479 D ML+T++ + Sbjct: 473 IDDMLETIITRM 484 >gi|126652479|ref|ZP_01724651.1| flagellar hook-associated protein K [Bacillus sp. B14905] gi|126590750|gb|EAZ84865.1| flagellar hook-associated protein K [Bacillus sp. B14905] Length = 530 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 64/524 (12%), Positives = 169/524 (32%), Gaps = 47/524 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ + NI NA+ Y R+ + Sbjct: 3 STFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTYPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D+ ++ +G + A E + ++ Sbjct: 63 HLGTGVEASSIQRIRSEFIDRQYRQETNKLGYWESRTNAIAQMEDVM-NEPSEFGLDKAF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + L+ + ++ + I AE + ++FN ++++ I+ + E+ + + + Sbjct: 122 EQFWKGLQDIATKPADGASRQVAISRAEHLAESFNYLDKQLKMIQGNLGNELNVSTTQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ VN I+ S H +D D RD L+ K++E I +S + + ++G Sbjct: 182 TILKQIAAVNKQIQEVEPSGHVPNDLYDVRDTLVDKLNEYIPVSIERIPSGGLASEVAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVV 283 + D + + ++ + +G V+ + ++ + ++ L + Sbjct: 242 SLKITFKGADGVVRDLVNGKDFAQFTAMGTNGTKVTGDDITNSFSELQLTGLESLDAHEA 301 Query: 284 PIFQNQLDEMARVLIGSFSE----------KDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + + + G+ + + + + + + Sbjct: 302 GAVTSTQTAIKQQDFEASKGKLLSLINSFGYQSAGGDIKGYYTETLQKLDQLANAFIKEF 361 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 ++ + + S + G + + DP Sbjct: 362 NAQHAKGYTLEEKDANGNIINASKPGGVFFEGTGAGGIKVNEDIKKNPNLLAASSDPTEE 421 Query: 394 INT------------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 N N +L + + +G + + ++ L S+ + +S Sbjct: 422 GNGKNAYELANMQHKLYADIDNASLQSFYQAIVGKVGVDGEEALRLAASSESQLQMVFKS 481 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EE++ +I +Q+YN + ++I D+ L ++ G+ Sbjct: 482 RDSVSAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGM 525 >gi|169826733|ref|YP_001696891.1| flagellar hook-associated protein FlgK [Lysinibacillus sphaericus C3-41] gi|168991221|gb|ACA38761.1| Flagellar hook-associated protein 1 (HAP1) [Lysinibacillus sphaericus C3-41] Length = 530 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 65/524 (12%), Positives = 170/524 (32%), Gaps = 47/524 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ + NI NA+ Y R+ + Sbjct: 3 STFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTYPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D+ ++ +G + A E + ++ Sbjct: 63 HLGTGVEAGSIQRIRSEFIDRQYRQETNKLGYWESRTNAIAQMEDVM-NEPSEFGLDKAF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + LE ++ + I AE + ++FN ++++ I+ + E+ + + + Sbjct: 122 EQFWKGLEDVGTKPADGASRQVAISRAEHLAESFNYLDKQLKMIQGNIGNELNVSTTQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ VN I+ S H +D D RD L+ K++E I +S + + ++G Sbjct: 182 TILKQIAAVNKQIQEVEPSGHVPNDLYDVRDTLVDKLNEYIPVSIERIPSGGLASEVAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVV 283 + D + + ++ + +G V+ + ++ + ++ L + Sbjct: 242 SLKITFKGADGVVRDLVNGKDFAQFTAMGTNGTKVTGDDITNSFSELQLTGLESLDAHEA 301 Query: 284 PIFQNQLDEMARVLIGSFSE----------KDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + + + + G+ + + + + + + Sbjct: 302 GVVTSTQTAIKQQDFEASKGKLLSLINSFGYQSAGGDIKGYYSETLQKLDQLANAFIKEF 361 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 ++ + + S + G + + +P Sbjct: 362 NAQHAKGYTLEEKDANGNIINASKPGGVFFEGTGAGGIKVNEDILKNPNLLAASANPTEE 421 Query: 394 INT------------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 N N +L + + +G + + ++ L S+ +S+S Sbjct: 422 GNGKNAYELANMQHKLYADIDNASLQSFYQAIVGKVGVDGEEALRLAASSESQLLMVSKS 481 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EE++ +I +Q+YN + ++I D+ L ++ G+ Sbjct: 482 RDSVSAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGM 525 >gi|163758033|ref|ZP_02165121.1| hypothetical protein HPDFL43_00370 [Hoeflea phototrophica DFL-43] gi|162284322|gb|EDQ34605.1| hypothetical protein HPDFL43_00370 [Hoeflea phototrophica DFL-43] Length = 487 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 161/487 (33%), Positives = 254/487 (52%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N AQ +N S Q + RNI NA N +Y RR+ + + VV+ + Sbjct: 1 MSLTTAINTAQTSLSNTSTQTNIVSRNIANASNPDYNRRNAALSTNVYGAQVVSIQRAQD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + +S+ Q+ L + + + + Y SP + LRD+L +++ E Sbjct: 61 QALFQQSIKSASSSSGQQSLLTGLTTLKGIFGGNDYEQSPAALLGTLRDTLSTFAAQPGE 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L ++ I +A+ + + VQ++R DAD+EI+ E+ NL LS N+ + Sbjct: 121 NTLAQSTIADAQILAAGLRDGSAAVQRVRLDADQEIQREVDNLNELLSRFETANNNVYQG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T ++ D LD RD LL++IS+IIG++ I R+ NDM +YTSDGTTLFETV R + F+ Sbjct: 181 TQARRDVSAHLDDRDSLLKQISQIIGVTPITRSGNDMALYTSDGTTLFETVARPVTFDSS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T + N +++DGV + + QGS+ KG I+ LLQIRD + P Q QLDE+AR L+ Sbjct: 241 AGFSATIQGNGVYVDGVPLPAGQGSSSTAKGTIQGLLQIRDDIAPKLQTQLDEIARALVV 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICVNPQYRSNPSFLRD 353 SF+E D A + + I+ + P +P LRD Sbjct: 301 SFAETDQSATPTLPDEPGLFTWSGGTVPAGSTLVPGISATITVNPALVPSLGGDPKLLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 GG + N A + ++ + + + FD AG++T+ +LL++A +SIGWLE Sbjct: 361 GGINGAAYNANPAGAASFSAQLDSFVVAIDNPTGFDATAGLSTSTSLLDFAADSIGWLEL 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 NRS++ + E+YSN GV++ EE+S L+++EQSY S +LI D+MLQ Sbjct: 421 NRSEADSAAQTREAFMFRAEEAYSNDTGVSIDEEMSMLLELEQSYKASARLISAVDEMLQ 480 Query: 474 TLLEGVK 480 L+ V+ Sbjct: 481 ALMSVVR 487 >gi|295707173|ref|YP_003600248.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM 319] gi|294804832|gb|ADF41898.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM 319] Length = 507 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 78/512 (15%), Positives = 181/512 (35%), Gaps = 46/512 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + +I N+ NA+ Y R+ Sbjct: 3 STFHGLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V T D + +G E + ++ + + Sbjct: 63 QIGMGVEASTVERIRDTFLDTQYRDETIKVGYWDARAGALEKMEEIM-NEPTEDGLSAVF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ +S++ + + SE +I+ AE V F+ + ++ ++ D E ++ ++ + Sbjct: 122 NQFFESIQDVASHPSESGARSVMIERAEAVGDTFSYLSTSLKTVQGDLQNERDVAVTQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L +++ VN I+ + + +D D+RD LL +IS+ + +S ++ TS+G Sbjct: 182 SLLEQISNVNQQIQNIEPNGYLPNDLYDERDRLLDEISKFMPVSLEYTKSSGNASATSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--------AVPKGKIKALL 276 + ++ T + + + + + P+GK+K L+ Sbjct: 242 VVTVQLQTSQGAITLLDGKTHQVNAISLKTNQDSYVTEIHIGDEIRNPESFPQGKLKGLI 301 Query: 277 QI---------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + V + LDEMA + F++K + G+ + I + Sbjct: 302 EASGYIDNSGNKTGVYASMIDDLDEMAYEFVNWFNDKHQQGVTLDGDTGMSFFNEISQKE 361 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + G + KN ++ Sbjct: 362 GAATGIVIANKIKHNTNNIAAASSASSGDNGTGRKGDGKN-----------AQLLSQFRQ 410 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + N V+L + ++ IG + + ++ L S+ + + + +T V+L EE Sbjct: 411 QVLINSGNQAVSLDGFYQSVIGQMSVDAQQANRLKSNSETLQGAVEQRRQSTSAVSLDEE 470 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +I+ + +YN S +++ D+ML ++ G+ Sbjct: 471 MTNMIQFQHAYNASARMVTMIDEMLDKIVNGL 502 >gi|169831934|ref|YP_001717916.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis audaxviator MP104C] gi|169638778|gb|ACA60284.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis audaxviator MP104C] Length = 532 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 67/533 (12%), Positives = 168/533 (31%), Gaps = 56/533 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ + Q + NI N + Y R++ + + Sbjct: 1 MS-FLGIEIARRSLHGHQQAMNTTAHNIANINTPGYKRQEAVLQSTPAIAYPSVFSPRPG 59 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 ++ V + + D+ + SAIG +++ E + + + + Sbjct: 60 QLGTGMSAVEIKRYSDAYLDRQVREAQSAIGYWSGVETALQRVEAVL-PEPTDFGIQALL 118 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEIS 161 + ++ + V AE + + + + + +R D + ++ Sbjct: 119 GNFFSTWHYLVQDPANPGSRSAVRGAAETLANSLSLAYYSLTNVRNDLIGGNDLFAQQVG 178 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + ++ +N I ++ + + +D L++RD LL ++S++ +S V N +V Sbjct: 179 RINSIGRQIAELNREIAYQRTAGANPNDLLNRRDYLLDELSKLADVSVTVTNAELNLVSV 238 Query: 222 SDG----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG------- 270 S + D F ++ + + ++ ++G G+ Sbjct: 239 SVYGLELVNGDGYLATDRGFTELAADHESLQNLIEALEGSTRGGLAGTFAVGARVKEYLK 298 Query: 271 -----------------KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 ++ + V A L + + + + Sbjct: 299 QLELLMLSLANAVNGVLALEFFAFNIERVTGETAAGGGTDAHRLANGWLIANTVTITVDG 358 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYR----SNPSFLRDGGSVSKKFLWNVKNLA 369 P +G + + +TI Q+ + + D + + Sbjct: 359 NPFEVYFEGDELPPGSGDWVLVDTITGTLQFGRIIEGTETIVADYDYKTGPISIGPEAEG 418 Query: 370 GYPDLINHYCDSFNK---NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + + D + TL Y + + + + + + Sbjct: 419 ALAQVTAEQAWAVAQIREQRVVDADGDGEDDTTLDGYYQQLVTGIGADLNAAQRGRDNVS 478 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + I + GVNL EEL+ +I+ + Y + ++I D++L TL+ + Sbjct: 479 AILGQIEALRESVSGVNLDEELTRMIQYQYGYQAAARVITVLDELLDTLINRM 531 >gi|294501824|ref|YP_003565524.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM B1551] gi|294351761|gb|ADE72090.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM B1551] Length = 507 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 75/512 (14%), Positives = 177/512 (34%), Gaps = 46/512 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + +I N+ NA+ Y R+ Sbjct: 3 STFHGLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V T D + +G E + ++ + + Sbjct: 63 QIGMGVEASTVERIRDTFLDTQYRDETIKVGYWDARAGALEKMEEIM-NEPTEDGLSAVF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ +S++ + + SE +I+ AE V F+ + ++ ++ D E ++ ++ + Sbjct: 122 NQFFESIQDVASHPSEAGARSVMIERAEAVGDTFSYLSTSLKTVQGDLQNERDVAVTQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L +++ VN I+ + + +D D+RD LL +IS+ + +S ++ TS+G Sbjct: 182 SLLEQISNVNQQIQNVEPNGYLPNDLYDERDRLLDEISKFMPVSLEYTKSSGNASATSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--------AVPKGKIKALL 276 + ++ T + + + + + P+GK+K L+ Sbjct: 242 VVTVQLQTSQGPITLLDGKTHQVNAISLKTNQDSYVTEIHIGDEIRNPESFPQGKLKGLI 301 Query: 277 QI---------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + V + LDEMA + F++K + G+ + I + Sbjct: 302 EASGYIDNSGNKTGVYASMIDDLDEMAYEFVNWFNDKHQQGVTLDGDTGMSFFNEISQKE 361 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + G + +N + + Sbjct: 362 GAAAGIVIADKIKQNTNNIAAASSASSGDDGTGRKGDGQNAQLLSQFRQKVLINSGSQAV 421 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +L + ++ IG + + ++ L S+ + + + +T V+L EE Sbjct: 422 -----------SLDGFYQSVIGQMSVDAQQANRLKSNSETLQGAVEQRRQSTSAVSLDEE 470 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +I+ + +YN S +++ D+ML ++ G+ Sbjct: 471 MTNMIQFQHAYNASARMVTMIDEMLDKIVNGL 502 >gi|220927554|ref|YP_002504463.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] gi|219997882|gb|ACL74483.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] Length = 537 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 81/530 (15%), Positives = 175/530 (33%), Gaps = 58/530 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVT 51 N A + A + ++ N+ NA Y R+ ++ + S Sbjct: 5 FFGLNIALSGLYTAQRNLDTVGHNLSNASTPGYSRQQSIQSASNPLAVMDGTGMVGTGSQ 64 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V D + + A G+ ++ ++ + + DSL Sbjct: 65 VTGVERIRDTYLDFKYWSENVANGEWSKKAELMGEIQVTF-NEPSKSGFVKIMDGFFDSL 123 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SK+ S V+ A + + FN +A ++ + D + +++ ++ + S++ Sbjct: 124 QELSKDPSSGAARALVVQKATTLAKYFNNTATHFEQFQNDINDQVKTDVDQINIIASQIQ 183 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223 ++N I + A+D D R +L+ ++S++ I ++ T Sbjct: 184 LLNKQIYNYELTGGTANDLRDSRTLLVDQLSKLANIQAKEIPYGKLPNGEDDIHFQITLS 243 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281 G TL + + + E D N + + G+++ LL +RD Sbjct: 244 GKTLVDHFSATKLIVVQRNIKLNEEDIGNLYDIKWEDGNSVN-ITGGELRGLLDVRDGKD 302 Query: 282 ---------VVPIFQNQLDEMARVLIGSFSE------------------------KDPIA 308 VP +Q +L+E R +F+E D Sbjct: 303 GIDGTPIYKGVPYYQRKLNEFVRTFAINFNEGYTRNDALPDGYEHNGVGHIEGYGYDSDL 362 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 ++ F + D I V SVS + + + Sbjct: 363 TDAPTGIRFFTMLCVGDTPISGSAFIGTATSVGDIANQYNQITAKNFSVSSDIIDDANRI 422 Query: 369 A-GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 A D N + K + ++ ++ + + + + + Sbjct: 423 ATSDADGQNGNTNILKKLMGIRSNQSLFKEGAPEDFMKSLVAGMGIDAQQAETFAKTQKA 482 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + GVNL EE++ ++K +QSYN + ++I+ ++ TL+ Sbjct: 483 LVRQVDNRRMSVSGVNLNEEMTNMVKFQQSYNAAARMIVTMGEIYDTLIN 532 >gi|23099962|ref|NP_693428.1| flagellar hook-associated protein FlgK [Oceanobacillus iheyensis HTE831] gi|22778193|dbj|BAC14463.1| flagellar hook-associated protein 1 [Oceanobacillus iheyensis HTE831] Length = 490 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 65/496 (13%), Positives = 158/496 (31%), Gaps = 28/496 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M ++ + NI NA+ Y R+ Sbjct: 1 MGTFYGLEMSRQALAAQQSALYTTGHNISNANTPGYTRQRVNLEAMNGFPYASRNRPNMP 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + D + +++ G + + E + ++ ++ + Sbjct: 61 GQMGTGVEAGSVQRIRNQFLDNQFRSENNSSGYWTEKANALSRMENVM-NEPSDSGLSKT 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +++ SL+ + N V+ + FN + + IR D +I+ + + Sbjct: 120 MNQFWQSLQDLAVNPDNAGARSVVLQRGHALADTFNYISSSMSTIRTDLSNQIDTTVKDA 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + +N+ IK +DA+D D+RDVLL ++S I+ I N++ Sbjct: 180 NSLIDNIDNLNEQIKNLETHGYDANDLYDKRDVLLDELSGIVNIKVTYDNSHAKNRADG- 238 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + + + + + E I+ + + + + + + Sbjct: 239 ---VATVEVLNDSGDSIATLVDGVEGTVNHIEAPTYNEGEENDLTVIEDIQVNGESILSS 295 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + L E + D S + + + Sbjct: 296 KGSLSGLVESYGYMEDGERVGDYPEMMSRLDELAYSIATSFNEIHSEGDSGVPFFGELTD 355 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + + AG DL + D F + ++ +Y Sbjct: 356 EKGAAGAISVILEDYEDINASADGEAGSGDLASDLADIFTNP------NDLLDGASINDY 409 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + IG L ++ + + + + + + V+L EE+S +IK + +YN + + Sbjct: 410 FGSIIGDLGVKSEQAYTMQENTMTLQHQVENQRLSISAVSLDEEMSNMIKFQHAYNAAAR 469 Query: 464 LIMFTDKMLQTLLEGV 479 + D+M+ T++ + Sbjct: 470 GMTTMDEMIDTIINRM 485 >gi|302037635|ref|YP_003797957.1| first flagellar hook-filament junction protein FlgK [Candidatus Nitrospira defluvii] gi|300605699|emb|CBK42032.1| First flagellar hook-filament junction protein FlgK [Candidatus Nitrospira defluvii] Length = 464 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 73/491 (14%), Positives = 174/491 (35%), Gaps = 38/491 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS L +F N + + +NI N Y R++ + S Sbjct: 1 MSGLNGLFGIGSNALATFQRALSVTGQNIANVSTPGYSRQEITLSESLPENGQPGQIGTG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT R + ++ L + + +GQ + +++ +D + +++ Sbjct: 61 VTATEIRRSVDSFVEQQLLSSNERVGQFGASHKALSQIQLVF-NDANDQGIAAGLNEFFK 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + N ++ ++ A+ + + N + ++ R D +++ I+++ S+ Sbjct: 120 AWQDVATNPADLTARTVLLTKADGLTKLLNQADAQLSAQRTSLDGQVQSGINDVNALASK 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N IK S A+D DQR L ++ ++ IS+I + V+ G L Sbjct: 180 IADLNSQIKLTEISGQQANDLRDQRGRFLNDLAGLVDISSIEDATGQVTVFVGIGQVLVA 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 N + + G +++ SA+ G++K L+ RD+ Q Sbjct: 240 EKTAYRLTGVAN-IANNGLLDVRYDGGTGPNTDITSAISGGRLKGLIDARDTTAAGLQTS 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+ + L+ + + + + + +++ Sbjct: 299 LNTLTAQLVSQVNTQHRLGYGLDGSTTQDFFTASGTTAGTISMALTDRQK---------- 348 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + ++ + + N T Y G Sbjct: 349 ---------------IAASSTAAGVPGNNVNALALSNLQTASVAGLGNTTFQGYYSAMAG 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + +++ + + + GV++ EEL L+K ++++ ++KLI +D Sbjct: 394 SFGGTLQGATRDLQGQEILHDQLLAHRAEVSGVSMDEELINLLKYQRAFEAASKLITTSD 453 Query: 470 KMLQTLLEGVK 480 +MLQT+L + Sbjct: 454 EMLQTILTLKR 464 >gi|317130315|ref|YP_004096597.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus DSM 2522] gi|315475263|gb|ADU31866.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus DSM 2522] Length = 550 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 67/543 (12%), Positives = 175/543 (32%), Gaps = 66/543 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + NI NA+ Y R+ + + Sbjct: 4 STFHGLETARRAMTTHQSALHTTGHNIANANTPGYSRQRVNFSTTEAFPTPAFNMPNMPG 63 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D + ++ G + E + ++ + + Sbjct: 64 QIGTGVKAGEVQRIREAFLDTQFRSENNKNGYWTARHNALEKMEDIM-NEPTESGLASTM 122 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + SL+ S + + V V + F + + +Q I+ D EI ++ + Sbjct: 123 DRFWQSLQDLSVHPEDAGARSVVRQRGIAVAETFQYTYQSLQAIQEDYRSEIGVQQDRIN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N I +D DQRD+L+ ++S + ++ ++ + G Sbjct: 183 SLIRQINNINKQISQVEPHGLLPNDLYDQRDLLVDELSGFMNVTVETVSSGGNASPQATG 242 Query: 225 ---TTLFETVPRDINFEKMNSYTVTSESNPIFID-------------------------- 255 L + RD+ ++ + I Sbjct: 243 RYTIKLADEHGRDMGVTLVDGARLERTELHISYSDDGLVQGLHVANERALNQVENASEIK 302 Query: 256 ----GVVVSSNQGSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFS 302 GVV +N + G ++A ++ P LD M + + Sbjct: 303 DLTSGVVHMNNLDAFRSPGALRATIETHGYIDRNGQVRGDYPEMMANLDLMVFTFVEELN 362 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----NPSFLRDGGSV 357 + + A+ + + + N + + N + + + ++ Sbjct: 363 AVHSSGWSLSEIEAGVKANDGEGIPFFTFAENANISSDNMKGAAQFLQVNRAIIEELDNI 422 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRS 416 + + N ++ + D + T + + ++ IG + + + Sbjct: 423 AASGFTSNPNEPLSEGFAGDGSNALALANVKDKNLSFGGSTTNVQSFYQSVIGNMAVDLN 482 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +++ + ++ + + + + + +GV+L EE++ +I+ + +YN + + I D+ML ++ Sbjct: 483 EANRMMKNTETLRDSVEDRRQSVMGVSLDEEMTNMIQFQHAYNAAARNITMIDEMLDIII 542 Query: 477 EGV 479 + Sbjct: 543 NRM 545 >gi|206895941|ref|YP_002246669.1| flagellar hook-associated protein FlgK [Coprothermobacter proteolyticus DSM 5265] gi|206738558|gb|ACI17636.1| flagellar hook-associated protein FlgK [Coprothermobacter proteolyticus DSM 5265] Length = 540 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 73/537 (13%), Positives = 174/537 (32%), Gaps = 67/537 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48 A+ NI N + Y R++ + Sbjct: 4 SLEIAKRSLQAQMLALDVTSHNIANVNTPGYSRQEAVFRPTQPYGIVSWLGTINPGQVGT 63 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + R + D +S + ++ E S ++ ++ +S Sbjct: 64 GVQISSIRRLRNDFVDMNYRNVTSESSYYSVKDQVFSILES-SINEIKDSGLQKALSDFF 122 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 D+ S + + + + +++ ++ ++ F ++ R+D D +I ++ + Sbjct: 123 DAWHEGSVSPEDPTVRRIIVEQSQNLIDAFKYVQNQLVSTRSDVDFQIVNSVARINDIGK 182 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 E+ +N+ I T+ +D LDQRD LL ++S+ + I + + V+ + + Sbjct: 183 EIAKLNEQISLSTSQGQQPNDLLDQRDNLLDELSQYVNIQKVALPTGSVSVFIGGLSFVD 242 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID--------------------------------- 255 + +I + + E Sbjct: 243 DRTVNEIKAIDNDRLIDSGEGYKYTEGLATYSVLPGLIQNDKWNESIALGTEDIYNGHVS 302 Query: 256 ------GVVVSSNQGSAVPKGKIKALLQIRDSVVP-------IFQNQLDEMARVLIGSFS 302 G + + GK+K L+++RD V+ +++EMA + Sbjct: 303 TLWLTMGNSLVPLDDRHLAGGKLKGLVEMRDDVIAYGEEPGRGLLGKINEMAYYFFDKIN 362 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV-SKKF 361 + N + + I + ++P S+P+ L G + + Sbjct: 363 LMLKQGKDLNGDAYSSNFFNWD--VNVVPKNIISAVALDPTVVSDPTKLPIGVTGLAGDG 420 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + + + N + G ++ + R + + S + Sbjct: 421 SLALLIAQEQNNALETVPEILNSTLWNPSLPGFLKGQSVAQSWRTLVAEWSADISRNRAF 480 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V + ++ ++ GVNL EE LI+ ++ Y +S +++ D ML ++ Sbjct: 481 MEGTNNVKSELTLLRTSESGVNLDEEAVNLIRFQKGYAMSARIVSVVDGMLDLIINM 537 >gi|299536009|ref|ZP_07049328.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis ZC1] gi|298728614|gb|EFI69170.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis ZC1] Length = 555 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 71/550 (12%), Positives = 162/550 (29%), Gaps = 74/550 (13%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ + NI NA+ Y R+ + Sbjct: 3 STFMGLEASKRGLFTQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPIYPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D+ ++ G + + E + D+ + Sbjct: 63 HLGTGVEAGSIQRIRDEFIDRQYRQETNKFGYWESRSNAISQMEDIM-DEPSQFGLNAAL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + LE S N I+ A+ + Q+FN +++ I+ + EI + + Sbjct: 122 EQFWKGLEDVSTNPENASSRTVAIERAKHLAQSFNYMDTQIKTIQGNLGNEINVSTDRIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209 L + +N I+ + H +D D RDVL+ +++ I +S Sbjct: 182 SILKRIASINKQIQEVEPNGHVPNDLYDARDVLIDELNSYIPVSIERVPSGGVASEVAEG 241 Query: 210 -----IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 + + +G + + ++ +F + + + Sbjct: 242 SLTIKFKPYPSGAPIELVNGREYAAFTTTGTDATGTVASIDGNDLTKVFQEIKISKLGEP 301 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMA------------------------------ 294 P L I+ + + + +L + Sbjct: 302 PTKPAADAVGLESIKYNELEPGKGKLLSLINSYGYAEYDAGGAFSGIKGYYPEALANLDK 361 Query: 295 --RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPS 349 +F+ + V D N I+E + + S Sbjct: 362 LASTFANTFNAVHKAGYDLTGVQNGLNFFETMDGSTTINAGNIKINEEFTKDTSKLAASS 421 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + G+ N + P + T + + IG Sbjct: 422 APNEVGNGKWAIELANLQSKAIGAGGFTITVGAN-TVVIPPSTEHLDSATFNSFYQGMIG 480 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 L + +++ L+ S+ + I+ + ++ V+L EE++ +I +Q+YN + ++I D Sbjct: 481 KLGTDGEEAYQLNKTSENLLLSITYNRASVSSVSLDEEMTNMITFQQAYNANARMITVVD 540 Query: 470 KMLQTLLEGV 479 + L ++ G+ Sbjct: 541 ETLDKIINGM 550 >gi|188586845|ref|YP_001918390.1| flagellar hook-associated protein FlgK [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351532|gb|ACB85802.1| flagellar hook-associated protein FlgK [Natranaerobius thermophilus JW/NM-WN-LF] Length = 568 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 68/562 (12%), Positives = 173/562 (30%), Gaps = 85/562 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + NI NA+ Y R+ + + Sbjct: 3 STFHGMETAKRALFAQRNALDTTGHNIANAERDGYTRQKAHMSATSPYTMPAQNMPGTAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + + D + S G E + + ++ Sbjct: 63 QIGTGVEVESVERMRDDFIDSQIREESRFKGNWENKNDTLKKIETLY-TEPSDSGLRSVF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ SKN + V++ + N + ++ D D+ I++++ + Sbjct: 122 DQFWESLQDLSKNPEDRTARTQVMERGVSLADTVNHMYGQFVNLKEDLDESIDIKVDEIN 181 Query: 165 RFLSELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ +N+ I+ + +A+D D+RD+LL ++SE+ + + ++ V Sbjct: 182 SIGHQIADLNEQIQNIELRTNQNANDLRDKRDMLLDELSELTNYNLSEDDKGNVRVSIGG 241 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS-------------SNQGSAVPKG 270 + + ++ FE + N + + + + G Sbjct: 242 TSLVEGNRVNELEFEAEAADADNDNGNNEGNGNIYLDDQEPRGGKVKWSHTGEEVNFRDG 301 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD--------------PIAGNSENVPG 316 + L+ RD +V ++L + SF+ + + Sbjct: 302 AMGGLMDSRDKIVQDHIDELRSVMAQFQESFNVVHSDDRAFNHYQAQAAQDGEDPFSDDV 361 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR------------------------ 352 + + + ++ Y N ++ Sbjct: 362 NQVDNFFEWKNDGNELLTVNEEIQEDVYLINAGYIDNDTLSEYLDGDYDDDDLSDMGLED 421 Query: 353 --------------DGGSVSKKFLWNVKNLAGYPDLINH-YCDSFNKNFIFDPVAGINTN 397 D + N +N +L + FD I+ + Sbjct: 422 IFGDNYETQEPENMDINPNKLMYRGNGENGKRLANLKDEDIIKEVPSEDNFDNDEKISGD 481 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 T +Y + L ++ + +++ + + GV++ EE++ +++ + + Sbjct: 482 TTFNDYIDAVVSDLGVEAQEAERMVENQELLVDQLENRREAVSGVSMDEEMTKMVQQQHA 541 Query: 458 YNISNKLIMFTDKMLQTLLEGV 479 YN +++++ D+ L T++ + Sbjct: 542 YNAASRVVTTIDESLDTIINQM 563 >gi|254464939|ref|ZP_05078350.1| flagellar hook-associated protein FlgK [Rhodobacterales bacterium Y4I] gi|206685847|gb|EDZ46329.1| flagellar hook-associated protein FlgK [Rhodobacterales bacterium Y4I] Length = 482 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 88/487 (18%), Positives = 169/487 (34%), Gaps = 18/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRS 57 MS+ + N A + A + + N+ NA Y RR V + + Sbjct: 1 MSIYSALNSAMTGLSAAGRSSQVVAENLANALTPGYTRRVLDLNSPGAGVPGVRIGDVQR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 N + + G + F + + S +S SL Sbjct: 61 LNDPVLISNRRVAEAEYGAAKAEGDFFSRISDLVGTVDDEMSLASQLSDFESSLIEAVSR 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + A + + + +A ++ +R +AD I ++ + + L E+ +N I Sbjct: 121 PDSQPRLNDLSVKANALADSISRTAEGLRGLRINADSAIGSQVDTVNQALKEIEKLNARI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A DA DQRD L+ +++ II ++ + R++ + +Y++ G L + +++F Sbjct: 181 MVVEAGGMDAVSMQDQRDQLIDQVNAIIPVNVVRRDSGQVTLYSTGGVMLLDHKASELSF 240 Query: 238 EKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + ++G + + + G + A QIRD Q LD Sbjct: 241 APSRDIMPHMTLGNGMISGLQVNGKTIGTGPDGPLRGGTLTAQFQIRDVTAVEAQEDLDA 300 Query: 293 MARVLIGSFSEKD---PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 MA LI F + I + + L I + Sbjct: 301 MAADLIERFQDPSLDATIGVTDAGIFTDDGSFYDPANIVGLSNRIELNDLLALDRAGETW 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 RD G L+ Y D+ N V N+T + N + Sbjct: 361 RFRD------GLYAAAPGDPGDSSLLQAYSDALNTTRTVSSVGLGTANMTAATLSANLLS 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ + + FN +S++ GV+ EL L+ VE+ Y + +++ D Sbjct: 415 RFAQDNETAARASTFAATSFNELSQAELAL-GVDTDAELQNLMLVEKYYAANARMLSVVD 473 Query: 470 KMLQTLL 476 ++++TLL Sbjct: 474 ELMETLL 480 >gi|260431757|ref|ZP_05785728.1| flagellar hook-associated protein FlgK [Silicibacter lacuscaerulensis ITI-1157] gi|260415585|gb|EEX08844.1| flagellar hook-associated protein FlgK [Silicibacter lacuscaerulensis ITI-1157] Length = 483 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 94/490 (19%), Positives = 183/490 (37%), Gaps = 19/490 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57 MS+ N A + AS+ A + NI NA Y +R S V VV Sbjct: 1 MSMSTALNNALGGLSAASRGAAVVSGNIANALTPGYAKRTLELATSQISGNGVQVVGVTR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + L A + + + F + E + S + + +SL + + N Sbjct: 61 HHDPVLAANLRAADADLALNSAIADFHSRFEALVGTPDDAASVSARLVDFENSLITAASN 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 V + +++ + N ++ ++++R+DAD++I + L L ++ +N I Sbjct: 121 PGSAERLDQVARSGDDLARALNDASEGLREMRSDADRKIGSYVDTLNTTLKDIEDLNARI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D + LD+R VL+ +++E+I ++ + R+NN + +Y+ G L E + F Sbjct: 181 PAVQNAGGDINGLLDRRQVLIDQVNELIPVNVVARDNNRVSLYSDGGLILLEGSAAEFAF 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQ------GSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + G+ ++ + + G + A QIRD + Q QLD Sbjct: 241 TTTGDTKPHMTIGNGLLSGLEINGQPVRTSGENAQIRGGALMAQFQIRDELSIEAQVQLD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA---DGIKDLDNKLCQGISETICVNPQYRSNP 348 +A+ LI F PGLF L I V+P N Sbjct: 301 AVAQDLIERFETPGLDPTALATDPGLFTDDGSRFSAAAPAGLASRIELNATVDPDAGGNS 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LR N +G + + N+ ++ E + + Sbjct: 361 WKLR------AGLGAAAPNDSGDATQLQAFSTVLNQARPVSIPDFGTGSLRAAELSEALL 414 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 N + + + + + + GV+ EL ++++EQ+Y + ++I Sbjct: 415 SKAGANAHTAQSRMTFAASLHQQMEQLVAEQ-GVDSDAELQRMMQIEQAYAANARIISVV 473 Query: 469 DKMLQTLLEG 478 D++++ LL Sbjct: 474 DELMEMLLRL 483 >gi|51246541|ref|YP_066425.1| flagellar hook-associated protein 1 (FlgK) [Desulfotalea psychrophila LSv54] gi|50877578|emb|CAG37418.1| related to Flagellar hook-associated protein 1 (FlgK) [Desulfotalea psychrophila LSv54] Length = 480 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 169/487 (34%), Gaps = 20/487 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 L N + + +Q NI N + K Y ++ + + V Sbjct: 3 GLFNALNAGRTSLEVSQKQIEISGNNIANVNTKGYSKQSAKLSPYPAMNFGGFFVGQGVK 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V ++ L S G + + A E + + N I DS Sbjct: 63 VTDVDRQHNTFISNQLVNKSVDYGYENSKTASFAEIERIFSVSKDN--LAGDIDHFFDSW 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S ++ +L + + FN SA E+ +++ + +++ +S + L +L Sbjct: 121 QELSTKPTDVVLRDITLQKGSVLAAKFNNSANELDQVQKNIGAQLKSGVSEVNNKLKQLG 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +ND I + A+ D R+ LLQ++++ IG + ++ + V G L Sbjct: 181 ELNDRIYQIENNGQTANGARDSRESLLQELAQTIGAQSYELSSGMVNVQLPSGLPLVNGN 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N T + + + G+ G+ LL ++D V+P ++ L+ Sbjct: 241 SASTIETVQNGPT-----VGLKLHTTGATRELGTKSMGGEFAGLLDLQDEVIPALEDNLN 295 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A LI +E + G + ++ + N Q + + Sbjct: 296 QLAYSLITKVNELHQGGAGLDGSTGHLFFEEPPHTNDVPIDPATGPSKDNWQDAARAMKV 355 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + + K G + ++ + + +N + + + Sbjct: 356 SLSG--AAQVAAAQKPTDGTSSKVGDNTNALKIADLSYALV-VNGTDSFNSFYGKITSTI 412 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + ++ + + GV+L+EE+ LI+ + S+ S K + D++ Sbjct: 413 GIGSNQNKLNLKGAEDALVQVKNLRDSAAGVSLEEEMISLIQFQNSFQSSAKFLSTVDEL 472 Query: 472 LQTLLEG 478 + TLL Sbjct: 473 MDTLLNM 479 >gi|304407695|ref|ZP_07389346.1| flagellar hook-associated protein FlgK [Paenibacillus curdlanolyticus YK9] gi|304343178|gb|EFM09021.1| flagellar hook-associated protein FlgK [Paenibacillus curdlanolyticus YK9] Length = 508 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 75/503 (14%), Positives = 165/503 (32%), Gaps = 27/503 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ ++ NI NA+ + R+ S Sbjct: 3 STFHSIETAKRSLFTEQANISTTGHNIANANTPGFSRQRVNLVASRPIEAPGYMRSNIPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D + ++G+ + + E + ++ ++ + Sbjct: 63 QLGTGVEFTSITRVREKFLDDQFRNANRSLGEWSIQSDTLSKLETVF-NEPSDSGIRTVM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S SK+ K V +NA +V FN +++ + + AD I + + Sbjct: 122 DNFWKSWTDLSKDPESITGRKIVRENALALVDAFNETSKHLTDLDADLTTNIATKTEQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM----VVY 220 ++ +N IK A + +D +D+RD L+ ++S++I +S + + + Sbjct: 182 SIAKSVSDLNLEIKRLEAYGDNPNDLMDERDYLVDQLSKMINVSVVNTADGYDVSVGNIM 241 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV----VVSSNQGSAVPKGKIKALL 276 DG T + + + + V E + + S + + Sbjct: 242 LVDGLNAPGTTVQALETQFNSGGVVGGEIQGLLVSRDQILKDYESQLDAMADTLVNGEIT 301 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + +QL + + + N P + + Sbjct: 302 ITIPAGSTYNGSQLAADLTTTVRGINGLHNLGYLFTNPPTQADDIFVTSDGTPTITAANI 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + +V+ VK +L+ D+ + GI T Sbjct: 362 RLSQDIIDDPMNIATSLRTAVTNGVNETVKGNNVLANLMAGLKDTKFQFSPVASQNGI-T 420 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 N T+ E+ + IG L +++ Q + + + GV+L EE+S LIK + Sbjct: 421 NGTIDEFYASMIGQLGLQSQEANRQATNQQDIVTQVDSRRQSVSGVSLDEEMSELIKYQH 480 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 +Y+ + + + D+ L ++ G+ Sbjct: 481 AYSAAARFMTTIDETLDKVINGM 503 >gi|15616183|ref|NP_244488.1| flagellar hook-associated protein FlgK [Bacillus halodurans C-125] gi|10176245|dbj|BAB07340.1| flagellar hook-associated protein 1 (HAP1) [Bacillus halodurans C-125] Length = 556 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 87/549 (15%), Positives = 171/549 (31%), Gaps = 72/549 (13%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ ++ NI NA+ Y R+ Sbjct: 4 STFHGLETARRGMMTQQAALRTVGHNIANANTPGYTRQRVNFVQTQAYPGVGRNAPSIPG 63 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D H++ G E + +D +N + I Sbjct: 64 QVGTGVMAGSIQRIRDAFLDLQYRQHNTQNGYWDARADALIRMEEIL-NDLDSNGLANQI 122 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ L+ S + + + + + A + +FN ++++R D EI + +L Sbjct: 123 NQFWSKLQDLSGDPEDTAVRYVLREQAVSLADSFNEQYMLLEQVRDDYGNEIGVVTDHLN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I+ S + +D D++D LL +IS II I + ++G Sbjct: 183 SLLSQLNEINAQIRKVEPSGYVTNDLYDEQDRLLDQISAIIPIEVQRVKSGGNPNPVAEG 242 Query: 225 TTLFETVPRDIN---------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 I + NS S +G + +P+ Sbjct: 243 AVTVTLKGTGITLVNGADKYALQQFEVTKTENSLGDEYVSGISISNGTDTVNLNVQELPQ 302 Query: 270 GKIKALLQIR--------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE--- 312 G +K L++ + + P +L+ M R + + + I E Sbjct: 303 GGLKGLIEAFGYYQDPTDIDNSEVNGIYPKMLAELNVMVRTFVEALNSAHRIGYTLEDPL 362 Query: 313 ------NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + K+ I R N L D + L K Sbjct: 363 TGEVSLGGDFFVFDENKPAGTLKVSDDILNNANNIAAARVNLDGLTDDARQQYQTLLAAK 422 Query: 367 NLAGYPDLINHYC----------------DSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + A L+ + T T Y R +G Sbjct: 423 DFAAIRTLLEDDSSFKPGAKRAFAGDGQNALLLSEIKDIRLNFNGTASTFSNYYRGVMGR 482 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S++ +V+ +++ ++ V+L EE++ +I+ + +YN + + I D+ Sbjct: 483 AAVETSEAVSKRDSYEVLRDNVQFERNSVSQVSLDEEMTLMIQFQHAYNAAARNITQIDE 542 Query: 471 MLQTLLEGV 479 ML ++ G+ Sbjct: 543 MLDRIINGM 551 >gi|229541552|ref|ZP_04430612.1| flagellar hook-associated protein FlgK [Bacillus coagulans 36D1] gi|229325972|gb|EEN91647.1| flagellar hook-associated protein FlgK [Bacillus coagulans 36D1] Length = 538 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 76/534 (14%), Positives = 169/534 (31%), Gaps = 56/534 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A+ ++ +N+ NA+ Y R+ + Sbjct: 1 MSTFFGLETAKRALTAQQNALYTVGQNVANANTDGYTRQRVNLQATDPYPAASMNRPAIA 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + D ++SA G + E + + ++S + Sbjct: 61 GQLGTGVEAGEVQRIRDKYLDVQYRENNSAAGYWSAKSDALSKMEAVMDETSTDSSLANT 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + +SL+ S N + V++ + + F+ + + + D EI + ++++ Sbjct: 121 MEAFWESLQDLSTNPEDVSARSVVLERGQTLTDTFHYLNSTLSQYKTDVGSEISVSVNDI 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L +++ +N I + + +D D+RD L+ K+S + ++ V+ + +D Sbjct: 181 NSTLKQISDLNQQIAVLEPNGYLPNDLYDKRDSLVDKLSNYLNVTVEVQKSGGNAKANAD 240 Query: 224 GTTLFETVPRDINFE-----------------------KMNSYTVTSESNPIFIDGVVVS 260 G + D ++ E I I G + Sbjct: 241 GIYNIKMAAADGTSVYLVQGSNYNAVEVQGGTDSNSDGILDGPPANGEMTGITIGGKNFA 300 Query: 261 SNQGS---AVPKGKIKALLQIRD------------SVVPIFQNQLDEMARVLIGSFSEKD 305 + P+GK+ L+ P + LD++A + Sbjct: 301 VADTTGKVTFPQGKLLGLIDSYGYQYAGANGTVEAGAYPSLLDSLDKLAYTFGNVLNAVH 360 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + G D K G + S D G Sbjct: 361 EKGTDLKGNAGTAFFTFGTLTDYKGAAGQIAVNSSLTYDKIAASSNGDSGDGLNAINLAN 420 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + T+ IG L + + ++ + Sbjct: 421 VVTFDLSSQSVQL-EGISGRLNIAALGLPLASGTITSNYEGLIGKLGVDAEQAGNMQTNT 479 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + + V++ EEL+ +IK +Q+YN + ++I TD+ML ++ G+ Sbjct: 480 ASLLDSVDMNRKSVSSVSVDEELTNMIKYQQAYNAAARMITMTDEMLDKIINGM 533 >gi|222147590|ref|YP_002548547.1| flagellar hook-associated protein FlgK [Agrobacterium vitis S4] gi|221734578|gb|ACM35541.1| flagellar-associated protein [Agrobacterium vitis S4] Length = 484 Score = 219 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 256/483 (53%), Gaps = 5/483 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N A N+S Q + +NI N+ + YV+RD T + V Sbjct: 1 MSLSSTMNTATTSLGNSSTQSQVLSKNIANSQTEGYVKRDAATISTSTGGAQVVTTRSED 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + K + + S Q L + + + + Y +SP+ YI+KLRD+++SY+ SE Sbjct: 61 AVLQKQMLSGQSQAEGQDTLNTGLDQLKALLGGNDYESSPSTYINKLRDAMQSYAAQPSE 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +T + A++V + N +A + +RA AD I+ ++S L LS+ VN ++ Sbjct: 121 LSLAETAVSAAQDVATSINNTAEGISNVRAQADDAIKDDVSKLNDLLSQFETVNQSVVKA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ +D +D LDQRD L+ IS+I+G+S++ R+NNDM +YT+DGT LF+ PR + F+ Sbjct: 181 TATGNDPNDALDQRDKLVSDISKIVGVSSVKRDNNDMALYTNDGTVLFDKQPRTVTFDST 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y ++E N ++IDGV V + G+ +G I A LQIRDS+ P Q QLDE +R LI Sbjct: 241 GAYGASTEGNSVYIDGVPVKAGTGGNTTAEGSIAANLQIRDSIAPQMQQQLDETSRSLIK 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK----LCQGISETICVNPQYRSNPSFLRDGG 355 FSE +P +++ +G D + + +P+ LRDGG Sbjct: 301 MFSETEPSTKDNDMPGLFTWEEGTTPEDGTLVSGISESFKVNSAYVTAEDGDPTLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + WN Y +L++ + F FD AG+ +L+YA NS+GWLE R Sbjct: 361 ANGSNYTWNTTEGVSYSELLDDFVTGFEDKMDFDSSAGLGDTSNVLDYASNSVGWLESYR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + +E+Y N GVNL EELS ++ +EQSY S KL+ D+ML++L Sbjct: 421 STADSANETKSALSQRATEAYQNKTGVNLDEELSKMLDIEQSYKASTKLMNAVDEMLKSL 480 Query: 476 LEG 478 LE Sbjct: 481 LEI 483 >gi|320354350|ref|YP_004195689.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] gi|320122852|gb|ADW18398.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] Length = 465 Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 83/488 (17%), Positives = 165/488 (33%), Gaps = 36/488 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 SLL N + + + NI N + + Y R+ + VT Sbjct: 3 SLLNALNAGKTSLLTNQKSIEIVGNNIANVNTEGYSRQRAELMQIPAVNFGDFFVGQGVT 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + ++ L S G++ A E + N I+ D+ Sbjct: 63 VSNVSRDYSVFINRQLQEKSIEYGEETGKSDSLAELERIFNVTEDN--LASDINDFFDAW 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + N S + VI + + F + E+ + + + I E+ L ++E+ Sbjct: 121 QELTANPSGQVERDVVIQRGNLLGEAFRSITDELDTVEQNMNTAIIAEVEYLNEKIAEIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +ND I S A+ DQRD++++ +S+ +GI T N + V G L + Sbjct: 181 KLNDRINLVEISGQTANAARDQRDLIIKDLSQTLGIQTYTDNRGMLCVQLPGGMPLVQGT 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 V + ++ V V+ + G GK K + ++RD + ++ L+ Sbjct: 241 MASTVKTVTVGTDVN-----LQLETVGVTLDIGLNNLGGKFKGMFEMRDVFIDNLRSDLN 295 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L + + + S + G + I L + S + Sbjct: 296 TLAIDLTSAVNAEHVTGYGSNGLSGYLFFNDISALPPG-------------EIASRNVLV 342 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + N G + + + TN T + + + Sbjct: 343 AITDTTQVAAAGNPSAAPGDNE------TALRIAQLEVTHKVGTTNDTFDNFFSQMVATV 396 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + +Q + GV+L+EE+ LI+ ++ + S K + D+M Sbjct: 397 GIEAARNDLALQGAQDAAVQLQNLRDGYSGVSLEEEMIDLIQYQRGFESSAKFLATVDEM 456 Query: 472 LQTLLEGV 479 + LL+ Sbjct: 457 MNALLQLK 464 >gi|205375049|ref|ZP_03227840.1| flagellar hook-associated protein FlgK [Bacillus coahuilensis m4-4] Length = 511 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 72/507 (14%), Positives = 164/507 (32%), Gaps = 29/507 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS A A+ N + + NI NA+ Y R+ + + Sbjct: 1 MSTFAGLETAKRAMNTSQSALYTTSHNIANANTPGYSRQQVSMSTTTPFPTAGFNAPQIP 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + D + +G + + E + ++ ++ Sbjct: 61 GQIGTGVEANAIIRIRDSFLDDQYRGEHNKLGYYQSQATALEKMEEIM-NEPSDSGLAAT 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + SL+ + + + D V V + FN + ++ ++ D EI + + Sbjct: 120 MDMFWKSLQDLAADPTNDGAKSVVRQRGIAVAETFNYLSTSIKNVQKDLQNEISVTEKQV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L+++ +N I + +D D+RD LL ++S ++ IS + N ++ Sbjct: 180 NSLLNQINNLNQQISDVEPHGYVPNDLYDRRDNLLDELSGLVDISVSYQQNGGQPHPSAV 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSES-------NPIFIDGVVVSSNQGSAVPKGKIKALL 276 GT + + + + + + V V + S + L Sbjct: 240 GTAVVYLSNGENSTRSAMLVGKNTVNEIKVNYNTDDLVSSVTVGAQTVSMEDFESVGKLR 299 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + +S + + + +E ++ Sbjct: 300 GLVESYGYETSSNPVNGTYANMLEELDYMAFTFANEFNAVHSSGATAAMINGAPGPAPDF 359 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD----PVA 392 + +S N+ N+A ++ N + + A Sbjct: 360 FAGEYGAAIATQKDFASKIGISNDIYQNLDNMATASTADLSMGNAENVTKLANVITTAPA 419 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N T Y + IG + +++ L S + + +T V+L EE++ ++ Sbjct: 420 FGAYNTTFKNYYESIIGDMAVQAQEANRLTTNSDTLRGAVENRRMSTSQVSLDEEMTNMV 479 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + +YN + ++I TD++L T++ G+ Sbjct: 480 QYQHAYNAAARMISLTDELLDTIINGM 506 >gi|258592553|emb|CBE68862.1| putative Flagellar hook-associated protein 1 (HAP1) [NC10 bacterium 'Dutch sediment'] Length = 466 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 78/490 (15%), Positives = 170/490 (34%), Gaps = 44/490 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 SL A A+ + NI NA+ + R+ T V Sbjct: 3 SLQASLTMARKALQAQQVAIQTTGHNIANANTPGFTRQRVDLTPAVPFSLGSVGSLGTGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + D A+ +Q ++ + E++ + N ++ +S L S Sbjct: 63 DIKDITRIRDLLLDSQFRDAHQALSRQEAEEATLSQIELIVG-EPTENGLSNSMSALFAS 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + ++ + V D A + F+ ++++ D EI++ + + ++ Sbjct: 122 FQDLANYPTDLAVRSVVRDKAMALADQFHRLDDGFERLKIDLHNEIQVVVKQVNGLAQQI 181 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I A+D DQRD L ++S+++G S + + V G TL + Sbjct: 182 ADLNRQIAMSEGGAGSANDLRDQRDQALDELSKLVGGSLVEDIGGQVRVTVGGGLTLVDG 241 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQ 287 + + T + + G +++ G++ LL R D V FQ Sbjct: 242 ----LTSVPITVDTTDPAYVRLSLGGNLLTPG------GGRLAGLLNSRNASDGFVKGFQ 291 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +QLD +A+ ++ + + G + + N + I V+P ++ Sbjct: 292 SQLDALAKAIVDKVNVVHMAGFGLDGSTGNNLFTPLVATVNA-----ARLIVVDPVIDAD 346 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + N + + D +VT Y Sbjct: 347 VAKIAAASTAVGVPGDN--------------SQALALADLQDNSIVALGSVTFGSYLSGL 392 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + L + + + + + ++ GV+L EE++ LI+ +++Y + Sbjct: 393 VSDLAEQEAGAKRSVNLHTTMADFLTSRRDQASGVSLDEEMTDLIRFQKAYEAAAHFANV 452 Query: 468 TDKMLQTLLE 477 + +L TL+ Sbjct: 453 VNDLLGTLMS 462 >gi|310659650|ref|YP_003937371.1| flagellar hook-associated protein 1 [Clostridium sticklandii DSM 519] gi|308826428|emb|CBH22466.1| flagellar hook-associated protein 1 [Clostridium sticklandii] Length = 518 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 75/515 (14%), Positives = 163/515 (31%), Gaps = 41/515 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN 49 S A + A + A + NI N + + Y R+ + Sbjct: 3 STFAGLSIASSGLFAAQRALDITGHNISNTNTRGYTRQRLNQSAQDPMNIQGGQGQLGLG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + M D + +G+ + E + ++ + + Sbjct: 63 VKMQFISQVRDEMLDIKYRQEVNTLGEWEEKYNSLTQVESIF-NEPSETGIRKVVDGFFE 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + S +K+ S + A + QNFN +K+ D+++E+E + + ++ Sbjct: 122 GINSLTKDPSNPTNRSVFLQKAIGLAQNFNDMYSRFEKMVVDSNEEVEASVRAINSMATQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGT 225 + +N I A+D D R++L+ +S+++ + I + + GT Sbjct: 182 IAKLNRQILESELDGSRANDLRDARNLLVDDLSKLVDLEVKNVPINNGKSSTLTILIQGT 241 Query: 226 TLFETVPRDINFEKMNSYTV---------------TSESNPIFIDGVVVSSNQGSAVPKG 270 L V ++ + E+ + S G Sbjct: 242 PLVNHVDTNVLELETGMDHPMFTDGQDIQPVSSRKDLENIKVSNIKWASGSTLVQEKLGG 301 Query: 271 KIKALLQIRDS------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 I LQ RD P + L E A + ++ + + Sbjct: 302 AIGGQLQQRDGYKDETKGAPYYVRFLSEFANTFAQALNDIHDDGYSLNGAAASGLPLFT- 360 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + VN +P+ L + N KN +L + Sbjct: 361 TKNGSTNFISASELKVNQALLDDPTKLSL--GLGDGAPDNNKNAIAMLNLRSKKDFEIRL 418 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + T + + I L + ++ + Q + + + GV+ Sbjct: 419 TYDTSGAQIVLGEGTPEDVLKTMIASLGVDAQEAKRMFNNQQYLTEEVDSFRLSVSGVSQ 478 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE+S +IK + +YN + ++I D+M+ ++ + Sbjct: 479 DEEMSNMIKFQHAYNAAARMITTVDEMIDVIINRM 513 >gi|306821564|ref|ZP_07455162.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550309|gb|EFM38302.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 536 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 78/522 (14%), Positives = 176/522 (33%), Gaps = 51/522 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50 S + N A + A + +I NI N + Y R+ + + V Sbjct: 17 STFSGLNAATSGLFAAQRVLDTIGHNIANQNTPGYTRQRANQSAASATSIENGNYLGMGV 76 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + D ++ G A E + + N T +++ S Sbjct: 77 KMSSISQIRDELLDIKYRNENTKKGYWSQSNVSFAQIENIFG-EPKGNGITKALNEFFTS 135 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++S KN + +T I+ + N + + + +DAD ++ ++++ ++ Sbjct: 136 IDSVLKNPDDPTAKQTFIETGLTFTRFVNNVIGKFETLISDADHDVNSLVTDINSKTKQI 195 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI------STIVRNNNDMVVYTSDG 224 +N +I A+D D+R++L+ ++SE+ I +T G Sbjct: 196 AELNKSILEAETQGGSANDLRDKRNMLIDELSEMADIRVNKSITTNNSGQKIEKYQIEIG 255 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS---------------NQGSAVPK 269 + + + +++ + + Sbjct: 256 DHVVVDHDKSVEIKRVERQDHPLYAASQKYNNPASDDLKNVKVTNLYFADGQQLNMNKIG 315 Query: 270 GKIKALLQIRDS-----------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 GK+ A LQ RDS +P + ++E + ++ + GL Sbjct: 316 GKLGATLQQRDSYGDPAMGNDVRGIPYYVRAVNEFVKSFAAKANDIHQKGTDKNGDKGLP 375 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + + Q + + +NP ++ S L G S ++ N + L + Sbjct: 376 LF----TISGNSRQIDARNVTINPDIVNSVSKLAIGISGNQSDNKNFQELYSMRNKELRL 431 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSHDLHMKSQVVFNHISESYS 437 + N F + N + ++ I + + ++ D + + S Sbjct: 432 EINQNVQGQFKTLDLGKGN--PEDVIKSLITSVLGVDAKEAKDNYKNQVTLSLEADMSRM 489 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+ EEL+ ++K + +YN S ++I D+M+ L+ + Sbjct: 490 EVSSVSENEELTNMVKFQHAYNASARMITTVDEMIDVLINRM 531 >gi|54307275|ref|YP_128295.1| flagellar hook-associated protein [Photobacterium profundum SS9] gi|46911695|emb|CAG18493.1| Hypothetical flagellar hook-associated protein [Photobacterium profundum SS9] Length = 468 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 69/482 (14%), Positives = 157/482 (32%), Gaps = 21/482 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSE 58 ++ N + N A+ + NI NA + R+ V V + Sbjct: 2 SLINIGLSGLNAANAGLSVTSHNIANAMTPGFSRQRVGFGAQVSAGSQGAGVGVSSVERM 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 N ++ ++ + + G ++ + E + + + + + + +L S Sbjct: 62 ADNYLNQQIYKQNGSWGFNKISSQYMQKTESLLNN--ASTNLNTGLDRFYAALSEASAAP 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + +T++ +E +VQ FN + ++ +++ +S ++ + +N++I+ Sbjct: 120 QDIAFRQTIVSQSESMVQRFNNLSSQLDGQTKQVSGQLDATVSEANTLMAGIASMNESIR 179 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 AS D LD RD ++++S ++ ++T ++ + + G L + + Sbjct: 180 DAGASGKSMTDLLDARDESVRQLSALVDVNTTYNDDGTISLTLDKGQPLVSGSSASVLKK 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + N + G I L+ RD + Q +LD MA Sbjct: 240 DNDGLLSLQRGNGTLALDGNI---------GGTIGGLVDYRDGELNELQRELDVMAYSFA 290 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 F+E + PG + G+ +D N ++ + Sbjct: 291 AQFNEAHQAGFDLNGDPGKALFGGVDSIDGAAKNLTLLVDDPNQLAFASKAGEPGNSENL 350 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ + D+ G +L G + Sbjct: 351 QQLIDLKNAPVSIDQTKLSIEDAETYQVAIAKFEGK----SLNNGYTGLTGDWAIKTAQI 406 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S+ + + GVNL EE + ++ Q Y + K+I ++ L Sbjct: 407 EADTEASKALVGQAQGERDSISGVNLDEEAASIMTYTQMYQANAKVISTAQQLFDVTLAM 466 Query: 479 VK 480 + Sbjct: 467 FR 468 >gi|323703356|ref|ZP_08115006.1| flagellar hook-associated protein FlgK [Desulfotomaculum nigrificans DSM 574] gi|323531719|gb|EGB21608.1| flagellar hook-associated protein FlgK [Desulfotomaculum nigrificans DSM 574] Length = 496 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 67/508 (13%), Positives = 151/508 (29%), Gaps = 51/508 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48 A+ + NI NA Y R++ + Sbjct: 7 GLEIAKRGTMAHRKAMDVTGHNIANASTPGYSRQEAVIKPTDPWTLPGLETRMLPGQLGT 66 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V R D S G E + + + Sbjct: 67 GSQVTEVRRIRDYYLDVQYRQSGSYEGYWEKKLDMAKRLETVF-PEPEGRGIQDVMLNFF 125 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA---------------D 153 + + + N ++ + K V+++ +E+ F ++ IR Sbjct: 126 NDWQDLNNNPRDEGVVKAVMESGDELSAIFRQMHDQLTAIRDGIYVEGSQVIPGYTEVIS 185 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I+ E+ + L ++ +++ I T + +D LD+RD L ++S++ I + + Sbjct: 186 GSIDYEVDKVNLLLKKIADISNTIVRVTQNDATPNDLLDERDNYLDELSKMGHIKVEIND 245 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + + VY D T E + K+ + + + + Sbjct: 246 DQTLKVYFIDETPGKEVI-------KIVGGQIVAAQVSVHRNNTDNKYYMFIDDDGNLQG 298 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 I + + + + + + S + I D + +L Sbjct: 299 TEPSINLTDMAEYNPAYPGSGQGSV--------LGLESARIENKEILDRLNNLAAAFITE 350 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 ++ + NP+ + + L+ + + + Sbjct: 351 VNNILAGITDDNGNPAPVTFFEGTDASDIRLATIDTTQEKLLGQ--KAIDVARLRSTTVN 408 Query: 394 INTNVTL-LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 I TL Y + + + N ++ Q + I + GV++ EEL+ +I Sbjct: 409 IGGQSTLFESYYQGIVAQVGANVDHHSNMLENQQAIGQQIDALRQSVSGVSVDEELTRVI 468 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y S ++I D+ML L+ ++ Sbjct: 469 QFQYGYQASARMIAIQDEMLDYLINRIR 496 >gi|308050018|ref|YP_003913584.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] gi|307632208|gb|ADN76510.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] Length = 457 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 75/481 (15%), Positives = 158/481 (32%), Gaps = 33/481 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS 57 + + + A A+ NI NA Y R+ + + + V V R Sbjct: 2 NMLGNGLSGLHAAQMHLATTSNNIANATTPGYSRQQLLVSARPGGFMGAGSGVQVDGVRR 61 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + S+ G S+ E + S + + L +L S ++ Sbjct: 62 VADEYLTAQIWRASTQAGFSTTKASYLGKTEEVFG--SKGASISMGLDSLFAALNSSVES 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ ++V++ A+ + F+T + ++ +++I+ ++ + L + +N I Sbjct: 120 PNDIATRQSVMNEAKSLASRFSTINQSLESQLKQVEEQIKGSVTEVNTRLENIARINKEI 179 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + ++ LD RD + ++SE++ I T + + + G L Sbjct: 180 QRNMSNGDVPPQLLDARDQAVAELSEMVDIRTTENADGTINITLPKGQPLVLGTSAASFE 239 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + S + I + GK+ AL RD ++ +DE+A L Sbjct: 240 TFPDPANPQMSSLSLTIGNTTYEIQEN---VGGKMGALFDYRDGSWQQSRDFIDELAMQL 296 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + P + +++ L G Sbjct: 297 ADGFNSILANGTDLNGNPPALDLFTYDPDNPAGTLKVTDGFTAE--------MLAFGQDG 348 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + N+K+L + D + + ++ TL E +G L Sbjct: 349 TPGDNSNLKDLLAFADTKLTF-------------TSLGSDATLNEAYAMYLGELGIQSRQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + VNL EE +I +Q+Y + K+I D++ QT++ Sbjct: 396 AQLESDSADGELLRALNERDGVSAVNLDEEGINIIVYQQAYQANAKVISTADQLFQTMMT 455 Query: 478 G 478 Sbjct: 456 M 456 >gi|222053739|ref|YP_002536101.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32] gi|221563028|gb|ACM19000.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32] Length = 479 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 85/503 (16%), Positives = 181/503 (35%), Gaps = 47/503 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + +F+ A Q NI N + Y R+ + V Sbjct: 1 MGINDIFSIATRGIAAQRQAIEVTSENIANVNTPGYSRQRVIMESGPANIASGFPIGGGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VV + N+ L +S Q Q+ E + ++ + + S Sbjct: 61 EVVAVQRSYDNLLQTQLVNGNSTYQQNLAKQTALQQVEPLF-NEVSTDGLGKAMESFFGS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S N + +I ++ +V F+ + + AD+++ +++ L + Sbjct: 120 WQDLSLNPQGAPERQALIARSQILVDTFHQMNTNLNAVITSADQDLVSITADVSDKLGNI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY-TSDGTTLFE 229 ++N I + ++ DQRD+L+Q+++ +GI+T ++N + V T G TL Sbjct: 180 ALLNQQIMTTQGMGGNVNEMKDQRDLLVQELAGKVGITTSEQSNGTLTVSLTLGGQTLVS 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------------GKIKALLQ 277 + + T + G +N + G+I LQ Sbjct: 240 GNQYSTVYTSPDGGTPQRNDIYVTPLGNPPPANTPATDTDVTATIGGLNNGYGEIGGTLQ 299 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 +RD +VP + +LDE+A +I S + + + G+ G D Sbjct: 300 VRDQIVPGYLAKLDELASKIITSVNTQHTAGADLAGGAGVAFFTGTSSAD---------- 349 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I V+ S+P+ + + N + +A N Sbjct: 350 IAVSGTITSDPTRIAAAANPFVGPGDNRN-------------ALLIADIKNSSLAFSTGN 396 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 T+ ++ + + + + + + + ++ + GV+L EEL+ L+K +++ Sbjct: 397 STVADFFNAFVSNVGIDVQKAKNTAAQGEAFLKQLNTLRESNAGVSLDEELTNLLKYQRA 456 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + + +L+ +M+ T+L V+ Sbjct: 457 FEGAARLVTTGSEMMDTILAMVR 479 >gi|154687656|ref|YP_001422817.1| flagellar hook-associated protein FlgK [Bacillus amyloliquefaciens FZB42] gi|154353507|gb|ABS75586.1| FlgK [Bacillus amyloliquefaciens FZB42] Length = 505 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 76/515 (14%), Positives = 172/515 (33%), Gaps = 54/515 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + +++ N+ NA+ + Y R+ + Sbjct: 3 STFMGLETARRALSAQQTALSTVSNNVANANTEGYTRQRVTLQSTSPYPAVSKNSDLTAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ +G + + E + + +N + Sbjct: 63 QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S ++L+ + N + + + + ++FN + + I+ D K ++ + Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L++L +N+ I S +D DQRD L+ ++S + I + + T++G Sbjct: 182 SILNQLNDLNNQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHALATAEG 241 Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + +M + + N + KG + Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSVGSSTVNADAFTGKGSL 301 Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 L++ + P LD MA +F+ G D Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFS- 360 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 ++ +G + I V+ + ++ + + K N NLA + Sbjct: 361 GVEAVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + T+ ++ + IG L N + +L S+ E + V+L Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADERRQSVSAVSL 465 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE++ +I+ + +YN + ++I D++ ++ G+ Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500 >gi|328555246|gb|AEB25738.1| flagellar hook-associated protein FlgK [Bacillus amyloliquefaciens TA208] gi|328913607|gb|AEB65203.1| flagellar hook-filament junction [Bacillus amyloliquefaciens LL3] Length = 505 Score = 216 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 76/515 (14%), Positives = 169/515 (32%), Gaps = 54/515 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + +++ N+ NA+ + Y R+ + Sbjct: 3 STFMGLETARRALSAQQTALSTVSNNVANANTEGYTRQRVTLQSTSPYPAVSKNSDLTAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ +G + + E + + +N + Sbjct: 63 QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S ++L+ + N + + + + ++FN + + I+ D K ++ + Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L++L +N I S +D DQRD L+ ++S + I + + T++G Sbjct: 182 SILNQLNDLNTQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHSLATAEG 241 Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + +M + N + KG + Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSIGSSEVNADAFTGKGSL 301 Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 L++ + P LD MA +F+ G D Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFSG 361 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D +G + I V+ + ++ + + K N NLA + Sbjct: 362 DE-AVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + T+ ++ + IG L N + +L S+ + + V+L Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADQRRQSVSAVSL 465 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE++ +I+ + +YN + ++I D++ ++ G+ Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500 >gi|254511786|ref|ZP_05123853.1| flagellar hook-associated protein FlgK [Rhodobacteraceae bacterium KLH11] gi|221535497|gb|EEE38485.1| flagellar hook-associated protein FlgK [Rhodobacteraceae bacterium KLH11] Length = 483 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 93/490 (18%), Positives = 183/490 (37%), Gaps = 19/490 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57 M++ N A N AS+ A + NI NA Y RR T S V VV Sbjct: 1 MNMSTALNNALGGLNAASRGAAVVSGNIANALTPGYARRTLELTTSPISGNGVRVVGITR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + A + + + + +F A E + S +++ SL + + Sbjct: 61 HQDPVLIANRRATDADLAAAKTVSAFHAGFEQLVGTADDATSIAARLAEFESSLITAASL 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + N ++ ++++R+DAD+ I +I L + L ++ +N I Sbjct: 121 PDSAQRLDQAARAGAGLSATLNHASEGLRQMRSDADRTIGKQIDTLNQTLKDIEKLNARI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + S D LDQR +L+ +++E++ ++ + R N+ + +Y+ G L E + +F Sbjct: 181 PAVSNSGGDIGALLDQRQILIDQVNELVPVNVVARANDQVSLYSDGGLILLEGPAAEFSF 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + G+ V+ + + G + + IRD + Q LD Sbjct: 241 STTGDTMPHMTIGNGLLSGLEVNGQPVRIDGDFAQIRGGALMSQFMIRDELAVEAQADLD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---KLCQGISETICVNPQYRSNP 348 +AR LI F PGLF +G + L I+ V+P + Sbjct: 301 AVARDLIERFEAPGLDPTTLATDPGLFTDEGNRFDPALQTGLASRITLNATVDPDTGGDS 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LR + G L++ + + + ++ ++ E + + Sbjct: 361 WRLR------AGLGATLPGAPGDASLLHAFGAALTEARPSPGLSFGTGSLRAAEISEALL 414 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 N + + + + + GV+ EL L+++EQ+Y + +++ Sbjct: 415 SRAGANAHSADQRRSFAANAQLEMEKIVAEQ-GVDSDVELQRLMQIEQAYAANARIVAVV 473 Query: 469 DKMLQTLLEG 478 D+++ TLL Sbjct: 474 DELMDTLLRL 483 >gi|118581855|ref|YP_903105.1| flagellar hook-associated protein FlgK [Pelobacter propionicus DSM 2379] gi|118504565|gb|ABL01048.1| flagellar hook-associated protein FlgK [Pelobacter propionicus DSM 2379] Length = 456 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 87/493 (17%), Positives = 173/493 (35%), Gaps = 51/493 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L + + NI N + + Y R+ + S V Sbjct: 1 MGLSSAMEIGKRGLIIYQVATEVTGENIANVNTEGYSRQRVILETSPPTTHNGFPLGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + T ++ + L +SA G L E ++ N+ I+ + Sbjct: 61 KISTVERYYDSLLQQQLVTANSASGYDTLCSEVLQQIEPSF-NELTNDGIGSAITNYFQA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 E S N S + ++ A+ +V++FN+ + + D + +++ L+ + Sbjct: 120 WEDLSTNASGTTERQVLLSQAQVLVESFNSVSTTLTDTIKAQDSSLTALTADINNKLTNI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT---- 226 +N IK +A++ DQRD+L+++++E +GI + VY D T Sbjct: 180 ATLNAQIKQTELVSGNANEMRDQRDLLVKQLAEQMGIKYTENADGTTDVYVQDSTPATYY 239 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + S T + + V S +A G + A LQ+RD ++P + Sbjct: 240 LVQGNQAGSLTVGGTSPARTVTIDSVSGATKTVDSTLYTAQDGGTLWATLQLRDVIIPDY 299 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +QLD++A +I + + + PG G + + Sbjct: 300 IDQLDDLASTIITDVNTQHQAGFDINGDPGADFFSGTSAATFSVSI-------------T 346 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 +P+ + GS + N + + + Sbjct: 347 DPNNIAAAGSSAAAPGGNG-----------------------NALLIADLQSGFSISYNT 383 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + + + + ++ + GV+L EEL+ L+ ++SY S KLI Sbjct: 384 LVSQIGLDVDQAETVVEQDEAYLKQLNTLRDSKSGVSLDEELTNLVMYQRSYQASAKLIT 443 Query: 467 FTDKMLQTLLEGV 479 +M+ TLL V Sbjct: 444 TVTEMMDTLLAMV 456 >gi|321313088|ref|YP_004205375.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5] gi|320019362|gb|ADV94348.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5] Length = 507 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D +++ G + E + ++ ++ + Sbjct: 63 QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S N +E+ V + V + FN + + ++++ E+ + ++ Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I + DQRD+L+ K+S ++ I + + +++G Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241 Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + ++ ++ + I + S KG + Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQVESFSSKGSL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 ++ V P + LD MA +F+E G D Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + S + + + + N LA Sbjct: 362 GGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N + + ++L+Y IG L +++ L ++ N + V+ Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ +I+ + +YN + +++ D++L ++ G+ Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502 >gi|254473300|ref|ZP_05086697.1| flagellar hook-associated protein FlgK [Pseudovibrio sp. JE062] gi|211957416|gb|EEA92619.1| flagellar hook-associated protein FlgK [Pseudovibrio sp. JE062] Length = 479 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 212/485 (43%), Gaps = 11/485 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56 MSL + AQ+ S + A RN+ N +N Y R++ + + + V V Sbjct: 1 MSLTSAMLTAQSSIAARSAEMAIASRNVANVNNPGYSRQEAVVQNIVSDTGSVVYVSHAS 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 K SA + S I L +++ SY Sbjct: 61 RMVNQAAFKATLKTGSAAIASGSYANMLDQLNPSGQVPF-GTSIASGIGTLGEAIVSYGN 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + S +LG++V+++A +V + S+ +++ R +AD + + N+ LS+L VN Sbjct: 120 DPSNQVLGQSVVNSATALVDDIKQSSESLKETRLEADAAMGRAVDNINNILSDLEEVNGK 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + + D + +DQRD +L+ +SE IGI+ + + NN + VYT G TLFE V R+++ Sbjct: 180 IVTGSNAGQDVNSLMDQRDEMLRVLSEEIGITVLDQENNGVAVYTDSGVTLFEKVAREVS 239 Query: 237 FEKMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 FE S I +DG+ V V G I +IRD + Q QLDE A Sbjct: 240 FETSLSLGSGEVGKNILVDGIAVAGPGATMPVSGGAIAGYAKIRDDTLVTMQTQLDEAAE 299 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L+ +F E P L + VNP + LRDGG Sbjct: 300 ALVDAFQETQPGGT-----APQDGLFTFAAGTGDLIGRLKVHDAVNPAAGGDVKLLRDGG 354 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + N + AGY DL+ Y + N+ FDP +G+N TL ++A N++ W R Sbjct: 355 INGAAYKHNTGDNAGYSDLLKSYEAALNQERTFDPTSGVNPTSTLKDFASNTVSWFSAER 414 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + F+ ++ SN GVN+ E+ L+ +E +Y+ S +L+ D+M Q L Sbjct: 415 KIATETSTLDASAFSSNAQMLSNKTGVNIDTEMQRLLTIETAYSASARLMTAVDRMFQEL 474 Query: 476 LEGVK 480 L V+ Sbjct: 475 LSAVR 479 >gi|163742564|ref|ZP_02149950.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis 2.10] gi|161384149|gb|EDQ08532.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis 2.10] Length = 472 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 183/477 (38%), Gaps = 18/477 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSENKNMFDKVL 67 A + + + N+ N Y RR T + V V + N + Sbjct: 1 MTGLTAAGRSTSVVSENLSNVLTPGYSRRSLALTSAGDGFSGVKVGHVQRINDPALQSSV 60 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + +S +G + +F + S T ++ L + Sbjct: 61 RSANSEVGVAEVKSAFFGRMTELVGSADDPYSITQRLTDFDSGLIEVISRPDSGPRLNDL 120 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 AEE+V++ +A ++ R AD+ I++++ + + L +L +N I ++ D+ Sbjct: 121 AIQAEELVRSIADAAEGLRNQRTAADRAIDVQVDTVNQSLEKLQKLNAKIAISQSTGSDS 180 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-- 245 LDQRD+L+ ++++II + + R+ + +++ G L + +++F+ Sbjct: 181 ASLLDQRDLLIDEVNKIIPVKVVNRDRGQVALFSEGGAVLLDGQAAELSFDGKADTLPYM 240 Query: 246 ---TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + I+G+ V++ G V G + A ++RD + Q LD MA+ LI F Sbjct: 241 TLGNGLLSGLQINGIDVATGPGGPVRGGTLAAQFEVRDVLTVEAQEDLDAMAKDLIERFQ 300 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + PG+F G I + Q ++ LRD Sbjct: 301 DPALDPTLTATDPGIFTDQGAFFDPANTVGIANRIELNDKIAMQGQAETWRLRD------ 354 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 AG L+ Y D+ + V N+ + N + ++++ + Sbjct: 355 GLNAASPGNAGDATLLRGYADALDAKRTVSSVGLGTANLDASTLSANLLSRFAQSKNSAE 414 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + GV+ EL LI +E+ Y + ++I D++++TLL Sbjct: 415 QNVAFAAATYTEMYQRELAQ-GVDSDAELQNLIVIEKVYQANARMISVVDELMETLL 470 >gi|261409644|ref|YP_003245885.1| flagellar hook-associated protein FlgK [Paenibacillus sp. Y412MC10] gi|261286107|gb|ACX68078.1| flagellar hook-associated protein FlgK [Paenibacillus sp. Y412MC10] Length = 520 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 71/518 (13%), Positives = 164/518 (31%), Gaps = 45/518 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ + NI NA Y R+ Sbjct: 3 STFHGIETAKRSLFAQMAGMNTTGHNIANASTPGYSRQVVGLIASRPLAMPGMYNQISPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + D+ + ++G + + E + ++ + T I Sbjct: 63 QLGTGVEVNYIKRVRDQFLDQQYWNANRSLGDWEVQAGTLSKLETIF-NEPSESGLTTVI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SK+ K V +NA + + FN +++++ ++AD + I + ++ Sbjct: 122 DNFWKAWSEFSKDPENVTSRKIVRENALAMAEAFNETSKKITDMQADLTQGIAVNADHIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV----- 219 +++ +N I + +A+D DQRD+++ ++S + ++ + V Sbjct: 182 TLTTQVAQLNYEINRIEGFRDNANDLRDQRDLIIDELSRMANVTVVEEETGYRVTVGGLE 241 Query: 220 ----------------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 G TL I + + + + Sbjct: 242 LVAGDAAVPVTPAQLETAYAGNTLNSGELFGIIKSRDGIVKDYLDQLNELANTIANGDVS 301 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + + + L V + + + + Sbjct: 302 ITIPAGSVLPEGTVLNGVTYSGTTRTLTADTTVTVKGLNGLHKLGYLFTSPAQAAGDFFS 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + + VN +P+ + V + + + G L Sbjct: 362 SKDGGPIT---AASFSVNNAIVQDPNKIASSLRVVAGTNGD-EVVKGNNTLALLMSQLRE 417 Query: 384 KNFIFDPVAGINT--NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + F F+ +A N T+ +Y R +G L ++ +Q++ + + + G Sbjct: 418 RPFTFNAIASNNGITTGTVDDYYRAVMGQLGVQSREALRQQDNNQLLVDQVDSRRQSVSG 477 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L EE+S LIK++ SY +++ + D+ L ++ + Sbjct: 478 VSLDEEMSNLIKLQHSYGAASRFMTTVDQNLDKIINSM 515 >gi|296330251|ref|ZP_06872732.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676144|ref|YP_003867816.1| flagellar hook-filament junction [Bacillus subtilis subsp. spizizenii str. W23] gi|296152519|gb|EFG93387.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414388|gb|ADM39507.1| flagellar hook-filament junction [Bacillus subtilis subsp. spizizenii str. W23] Length = 507 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D +++ G + E + ++ ++ + Sbjct: 63 QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGIL-NETDDSGLNSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S N +ED V + V + FN + + ++++ E+ + ++ Sbjct: 122 NSFWNSLQELSNNTNEDSARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I + DQRD+L+ K+S ++ I + + +++G Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALSSAEG 241 Query: 225 TTLFETVPRDIN------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + ++ ++ + I + S KG + Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYAVSELAANYDNETGLVSSISIGDTAVQVESFSSKGSL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 ++ + P + LD MA +F+E G D Sbjct: 302 LGFVESYGYITADGEEKGIYPEMLSDLDNMALEFAKAFNEVHRNGLTKSGDQGGDFFDFT 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + S + + + + N LA Sbjct: 362 GGDTEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N + + ++L+Y IG L +++ L ++ N + V+ Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIKAQEANRLASNTETQLNDADINRQQMSAVS 466 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ +I+ + +YN + +++ D++L ++ G+ Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDEILDKVINGM 502 >gi|114330367|ref|YP_746589.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91] gi|114307381|gb|ABI58624.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91] Length = 467 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 63/485 (12%), Positives = 164/485 (33%), Gaps = 34/485 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N + A + NI NA Y R+ + + + V V Sbjct: 3 NSIMNVGVSGLQAAQTALLTTSHNISNATTPGYNRQQAIQSTNTPLPHSNGFIGRGVQVS 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + Q + + + AD T + ++++ Sbjct: 63 TVQRIYNQYLVSQSLQAQGQSSQLDSHYNEIKQIDNLLADTTS--GLTPALHNFFNAVQD 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + ++ NAE +V F + + + ++R + +I ++ + ++ + Sbjct: 121 VASNPTSIPSRQAMLSNAEALVSRFQSMDQRLSEMREGVNSQIASSVNEINSLAQQVVRL 180 Query: 174 NDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N I+ A+ A+D DQRD L++ +S++ + + ++N V+ +G +L Sbjct: 181 NTNIQAVEGSANSQPANDLYDQRDALIRDLSKLANVDVVRQSNGHYNVFIGNGQSLVVGT 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S + + G + G + LL R + Q + Sbjct: 241 SAMALKAVPSSSDPQRLVVAMDV-GDKEILLPEHQLQGGSLGGLLAFRSETLDAIQTDFN 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A+ L +F+++ + + + G + + Sbjct: 300 QLAKGLADTFNDRHTLGLDLQGTVGKNFFEVTDSNHVARS-------------------I 340 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + + + D + ++ + + + + + Sbjct: 341 EVAISDPAEIAAALNDGGSFDDRVADNRNALQLAKLQTTNTLQGGTASYQSAYASLVSQV 400 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + ++ + GVNL+EE + L++ ++ + S+K+I ++ + Sbjct: 401 GNKTRELEVTSQAQESLLAQTDQAIQSLSGVNLEEEAANLLRYQRMFQASSKVIEISNSL 460 Query: 472 LQTLL 476 +LL Sbjct: 461 FDSLL 465 >gi|16080594|ref|NP_391421.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. 168] gi|221311492|ref|ZP_03593339.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. 168] gi|221315819|ref|ZP_03597624.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320734|ref|ZP_03602028.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. JH642] gi|221325019|ref|ZP_03606313.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. SMY] gi|2828498|sp|P39810|FLGK_BACSU RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|1762338|gb|AAC44946.1| flagellar-hook associated protein 1 (HAP1) [Bacillus subtilis subsp. subtilis str. 168] gi|2636067|emb|CAB15558.1| flagellar hook-filament junction [Bacillus subtilis subsp. subtilis str. 168] Length = 507 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D +++ G + E + ++ ++ + Sbjct: 63 QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S N +E+ V + V + FN + + ++++ E+ + ++ Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I + DQRD+L+ K+S ++ I + + +++G Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241 Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + ++ ++ + I + S KG + Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 ++ V P + LD MA +F+E G D Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + S + + + + N LA Sbjct: 362 GGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N + + ++L+Y IG L +++ L ++ N + V+ Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ +I+ + +YN + +++ D++L ++ G+ Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502 >gi|326202857|ref|ZP_08192724.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] gi|325986934|gb|EGD47763.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] Length = 544 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 79/537 (14%), Positives = 176/537 (32%), Gaps = 65/537 (12%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVT 51 N A + A + ++ N+ NA Y R+ T+ + S Sbjct: 5 FFGLNIALSGLYTAQRNLDTVGHNLSNATTPGYSRQQTIQSASNPLAVLDGTGMVGTGSQ 64 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + D + + A G+ ++ ++ + + DSL Sbjct: 65 ATGVQRIRDSYLDFKYWSENVASGEWSKKAELMGEIQVTF-NEPSKSGFVKIMEGFFDSL 123 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SK+ S V+ A + + FN +A ++ + D + +++ ++ + S++ Sbjct: 124 QELSKDPSSGAARALVVQKATTLTKYFNNTATHFEQFQNDLNDQVKTDVDQINIIASQIQ 183 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223 ++N I + A+D D R L+ ++S++ I ++ T Sbjct: 184 LLNKQIYNYELTSGTANDLRDSRTKLVDQLSKLANIQAKEISYGKLPNGEDDVHFQITLG 243 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281 G TL + + + +E D N + + G+++ LL +RD Sbjct: 244 GKTLVDHFSSTKLNVVQRTTKLNAEDIGNLYDIKWEDGNSVN-ISGGELRGLLDVRDGKD 302 Query: 282 ---------VVPIFQNQLDEMARVLIGSFSEKDP---IAGNSENVPGLFIADGIKDLDNK 329 VP +Q +L+E + +F+E +V + DL + Sbjct: 303 GIDGTPIYKGVPYYQKKLNEFVQTFAIAFNEGYTKTNSGYAHTDVGHIDGYGYDPDLTDA 362 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD--------- 380 + P D + + + Sbjct: 363 NTAPTGIRFFTMLGVGNTPISSADLIAGVTVGKSDPDYINQVAQQYKQITAKNFSVSSDI 422 Query: 381 --------------SFNKNFIFDPVAGINTNVTL------LEYARNSIGWLEKNRSDSHD 420 + + GI TN +L ++ ++ + + + + Sbjct: 423 IDNPNNIAASETTGQNGNTGVLKKLMGIRTNQSLFKEGAPEDFMKSLVAGMGIDAQQAET 482 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + GVNL EE++ +IK +QSYN + ++I+ ++ TL+ Sbjct: 483 FAITQDTLVRQVDNRRMSVSGVNLNEEMTNMIKFQQSYNAAARMIVTMGQIYDTLIN 539 >gi|291486094|dbj|BAI87169.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. natto BEST195] Length = 507 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D +++ G + E + ++ ++ + Sbjct: 63 QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S N +E+ V + V + FN + + ++++ E+ + ++ Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I + DQRD+L+ K+S ++ I + + +++G Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241 Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + ++ ++ + I + S KG + Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 ++ V P + LD MA +F+E G D Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + S + + + + N LA Sbjct: 362 GGETEPAKGAAGKIKVADSILDSKGANIAFSLTGAANDNANATKLA-------------- 407 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N + + ++L+Y IG L +++ L ++ N + V+ Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ +I+ + +YN + +++ D++L ++ G+ Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502 >gi|212637791|ref|YP_002314316.1| flagellar hook-associated protein [Shewanella piezotolerans WP3] gi|212559275|gb|ACJ31729.1| Flagellar hook-associated protein, putative [Shewanella piezotolerans WP3] Length = 457 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 83/486 (17%), Positives = 165/486 (33%), Gaps = 36/486 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ N + N + + N+ NA Y R+ M + V V Sbjct: 1 MSM---LNIGMSGLNASMAALNATSNNVANAMVPGYSRQQVMMSSVGNGVYGSGAGVMVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +S +G ++ S+ E + + NS + + L SL S Sbjct: 58 GVRRISDQYEVAQLWNTTSNLGFAKVQSSYFGQVEQVFGSE--GNSISAGLDLLFASLNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + +E + V++ A + Q FN+ + V + +I + L + Sbjct: 116 AMEQPNEIAYRQGVLNEARAISQRFNSISEGVSSQITQVEGQIGASAKEINAQLDSIAKF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ A+ + LD RD + +SEI+ + + +N + + + G L Sbjct: 176 NAEIQAANANGNVPLALLDARDAAIDDLSEIVDVKVVEESNGLVNISLAQGQPLLAGTTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + I ++ G + AL+ RD+ + +DE+ Sbjct: 236 SKIQVSPDPANPQFSQISIQFGQSNFPLDE---KAGGSLGALIDYRDNSLVDSMAFIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + F+ + P + I+ Sbjct: 293 AMTMADEFNAVLAGGTDLNGNPPTQDLFSYDPSNPAGSMKITA----------------- 335 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + G + + N +F F+ + + T+ + + +G L Sbjct: 336 -GFNADMLAFGKDGTPGDNSNLKDLVELANASFTFNS---LGVDTTMGDAFASKVGELGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + + +++T GVN+ EE + LI +QSY + K+I D++ Q Sbjct: 392 ASRQAQMAEDTAVKLQMEAQSQWASTSGVNMDEEGTNLIIYQQSYQANAKVISTADQLFQ 451 Query: 474 TLLEGV 479 T+L + Sbjct: 452 TILNSI 457 >gi|308175273|ref|YP_003921978.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7] gi|307608137|emb|CBI44508.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7] Length = 505 Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 76/515 (14%), Positives = 168/515 (32%), Gaps = 54/515 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + +++ N+ NA+ Y R+ + Sbjct: 3 STFMGLETARRALSAQQTALSTVSNNVANANTAGYTRQRVTLQSTSPYPAVSKNSDLTAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ +G + + E + + +N + Sbjct: 63 QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S ++L+ + N + + + + ++FN + + I+ D K ++ + Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L++L +N I S +D DQRD L+ ++S + I + + T++G Sbjct: 182 SILNQLNDLNTQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHSLATAEG 241 Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + +M + N + KG + Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSIGSSEVNADAFTGKGSL 301 Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 L++ + P LD MA +F+ G D Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFSG 361 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D +G + I V+ + ++ + + K N NLA + Sbjct: 362 DE-AVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + T+ ++ + IG L N + +L S+ + + V+L Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADQRRQSVSAVSL 465 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE++ +I+ + +YN + ++I D++ ++ G+ Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500 >gi|77918753|ref|YP_356568.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] gi|77544836|gb|ABA88398.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] Length = 464 Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 76/491 (15%), Positives = 169/491 (34%), Gaps = 38/491 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS L N + NI N + Y R+ Sbjct: 1 MSGLTDALNLGKTSLATHQTLLDVTGNNIANVNTDGYSRQSVDLGTVPALNFRGFQIGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + ++ + +S +G+Q + A E + + N T I + D Sbjct: 61 VTANNIQRAEDTFLNRQILDKNSGLGEQSAQTTPLAEMETIFNLGNDN--LTAKIDQFFD 118 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E S + TV+ + +F++ ++++ + + D+ + +++ + + L++ Sbjct: 119 GWEQLSVTPDGSVERDTVLQYGTLLADSFHSMSQDLADLSSQVDEALTSKLAEINQKLAQ 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + N I ++ +A+ D RD LL+++S +G + N+ ++ V G L Sbjct: 179 VADYNQRITTLESTGINANADRDGRDALLEELSFSLGTQSYENNDGNVSVQLPTGLPLIS 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T T+ + + ++ + + G+ K LL +RD +P Q+ Sbjct: 239 GNRAFSL-----EATATATGSELQLNLGTTTRPVDANGLGGEFKGLLNLRDQFIPQVQDN 293 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A L + + G ++ ++P Sbjct: 294 LDRLAYTLSTEVNTLHAGGTGLDGSTGQDFF------------------SLSISGGADPW 335 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 G N + AG + ++ + + + + + Sbjct: 336 SGAAAGIEVALTASN-QVAAGQSSAVGDNTNALLMTELKNAKTM-DGAHSFGTFYAKIAS 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + + + VGV+L+EE+ LI+ ++ + S KL+ D Sbjct: 394 DIGLESAQNQLSVTGLEDTMLQLENLRDSKVGVSLEEEMINLIQYQRGFEASAKLLTTVD 453 Query: 470 KMLQTLLEGVK 480 +M+ T+L + Sbjct: 454 EMMDTVLSLKR 464 >gi|325288761|ref|YP_004264942.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] gi|324964162|gb|ADY54941.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] Length = 493 Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 67/510 (13%), Positives = 159/510 (31%), Gaps = 55/510 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S A + + + NI NA + Y R+ + Sbjct: 3 STFAGLELGKRALSAQQLALNAAGHNISNASTQGYTRQVANLATTIPDQLYLFGHTQSVG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V T N D+ ++ Q+ E + ++ +S + + K Sbjct: 63 TGVAVATIIRVRDNFIDRQYRWETARQQYWTERQNSLQQVEGIL-NEDSADSLHNDLDKF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + S + V + A + N ++++ ++ D D ++ +++ + Sbjct: 122 WVAWSDLSTSSETLGAKAVVRERAIALTGTLNHISKQITDMQNDLDNKVNVQVGLINNIA 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223 ++ +N IK + +D D RD L+ ++S+I+ + I + Sbjct: 182 QQIKDLNMQIKSAEVAGDKPNDLYDVRDNLVDELSKIVSVRVIESTDPMFTDRQVGIYKV 241 Query: 224 -------GTTLFETVPRDIN------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 G L + T + P G G Sbjct: 242 QIGDEAAGQLLVDDSQVTELAWIDSVTNTTQDLDTTPDGIPDVEFGPGSGIKLQLGSQMG 301 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +++L+ R + + Q +LD +A ++ + + + Sbjct: 302 SLQSLIDTRYTYLQNLQGKLDNLAAGIVTAVNSLHQDTDPATTDYFF------------- 348 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + ++ L + +G D+ + + Sbjct: 349 ---------DPTKLTASDITLYSDIEDDAGRIITGTTGSGDGDVASSIAALAHGWSSAAT 399 Query: 391 VAGINTNVTLLEYAR-NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 A + + +L +Y N + + + + + N +S + GV++ EE++ Sbjct: 400 PAEMGSAASLGDYYNGNIVAVFGVDVQQAQRMTAVEDALINQLSNRRDSVSGVSIDEEMT 459 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LIK + +Y+ + +++ D ML ++ G+ Sbjct: 460 NLIKFQTAYSAAARMVTIMDDMLDKVVNGM 489 >gi|295697521|ref|YP_003590759.1| flagellar hook-associated protein FlgK [Bacillus tusciae DSM 2912] gi|295413123|gb|ADG07615.1| flagellar hook-associated protein FlgK [Bacillus tusciae DSM 2912] Length = 540 Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 76/534 (14%), Positives = 170/534 (31%), Gaps = 61/534 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 A + NI+NA+ Y R+ + S Sbjct: 4 TFFGLETAVRGLRGQQAAINTASHNIDNANTPGYTRQRVDLSASTPIEMPSLYKTATPGQ 63 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V V D + +G+ + Q + ++ ++ ++ Sbjct: 64 IGTGVQVEQITRLRDQFLDDQYRHQNQYLGEWNVRQDALDKISAIL-NEPSDSGLATVMA 122 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 ++ N + V V Q N +A+++ + AD + ++ +++ + Sbjct: 123 NFWNAWGKLGPNSDDLAARMQVKQTGIAVAQTLNQTAKQLSDLDADLQRSLQAKVTQVNS 182 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 +L+++ +N+ I +D LD+RD L+ ++S++ + + T G Sbjct: 183 YLNQIATLNNQIAEIRQVGDQPNDLLDRRDYLVDQLSQLADVQATESGGTYTL--TIGGQ 240 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPI-------------------FIDGVVVSSNQGSA 266 T+ + + + +G + G Sbjct: 241 TVLQNSTVTSLDPANLTVGGGELKGLLEARQDVASYRAQLDAFANGLANGKMTIKLPGDW 300 Query: 267 VPKGKIKALLQI-RDSVVPIFQN--QLDEMARVLIGSFSEKDPIAGNSENVP-------- 315 G D + + Q D++ LI + ++ +A + Sbjct: 301 TLVGSGGGAPTFPVDVTLADGRQFKQGDQVPADLITTLADGTQVATIPKGAAVTVNGLNG 360 Query: 316 --------GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV-K 366 D D + TI V+P S+ + + + + + Sbjct: 361 LHRLGYSLNGPGGDFFVSTDPNGGPITAATIAVSPDIVSDVGNIASALTTAPQKGTDPLT 420 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 LAG L + + + + TN TL +Y + IG L ++ Sbjct: 421 GLAGDGTLAIAINNIKDTKIDYTGLGVPTPLTNGTLDDYFQAVIGGLGVQSQEAERQVAN 480 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +V+ + + GV++ EE++ +I+ +Q+Y S +++ D+ML L+ G Sbjct: 481 QEVLVQQLDGKRQSVAGVSIDEEMANMIRFQQAYGASARMVTAIDQMLDKLING 534 >gi|209963558|ref|YP_002296473.1| flagellar hook-associated protein 1 FlgK, putative [Rhodospirillum centenum SW] gi|209957024|gb|ACI97660.1| flagellar hook-associated protein 1 FlgK, putative [Rhodospirillum centenum SW] Length = 495 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 103/496 (20%), Positives = 200/496 (40%), Gaps = 19/496 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MS+ A Q+ A + RN+ NA Y R++ VTV Sbjct: 1 MSIGLALQTALTGLQAQQQKSAILSRNVANATTPGYTRKEVTLASLTVGGEGRGVTVQDV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R + SS + A+ S + ++ L + + Sbjct: 61 RRNADAHLARETRTQSSDYAAKAARADALAVYTESIGQPQEERSLSSAVTALETAFLALE 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + V+D A + N + +++++R AD +I ++++ + L +L +N Sbjct: 121 ELPDNPVQQRAVVDAAVSLANRLNAADDKIKQVRQQADSDIAASVADVNQALVQLEKLNR 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 +K +T S D + DQRDVLL +I+ IGI R+ N++VV T G TL + R + Sbjct: 181 EVKMRTGSGQDTTELEDQRDVLLDRIAGQIGIQYFTRSPNELVVMTDGGVTLLDGSARML 240 Query: 236 NFEKMNSYTVTSES----NPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQ 289 F T+E + + ++G ++ G +P G+I L ++RDS++P + Q Sbjct: 241 EFTPTAVIGSTTEYPSMLSGLKVEGADIAPGSGYPLPLKSGRIAGLFEVRDSLMPQARRQ 300 Query: 290 LDEMARVLIGSFSEKDP----IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 +DE+A VL+ F D + + + + Sbjct: 301 IDEIASVLVDRFQAADASITGTGLSDTGLFTDAGVRHYRAPPYSPASPGPAGLAGRIA-V 359 Query: 346 SNPSFLRDGGSVS---KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 ++ + GG+ + G I + F + FD AG+ TL Sbjct: 360 NDLVRVEAGGNPALLRTGIHAATTGDVGDTAQIRSFLGVFQQTVSFDADAGLIPTGTLKG 419 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 +A ++G + R+ + + V+ + + + GVN++EE+ L+ +E+++ + Sbjct: 420 FASAAMGHQQMLRATAANDAKAQSVLLETVETARISKDGVNIEEEMQELLLIEKAFAAAG 479 Query: 463 KLIMFTDKMLQTLLEG 478 +++ +ML TL+E Sbjct: 480 QVMQAASRMLDTLMEI 495 >gi|262273522|ref|ZP_06051336.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] gi|262222500|gb|EEY73811.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] Length = 464 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 82/480 (17%), Positives = 156/480 (32%), Gaps = 25/480 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 +FN + N AS + +NI + Y R+ V V + + Sbjct: 2 NLFNIGLSGLNAASAGLSVTGQNINQSLVPGYSRQRISFGSQDGGVQVSSVERMSDTFTH 61 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + S G + + + E + N S + + +L S + Sbjct: 62 LQIQRQRSGFGYHQATTQYLSQAEALL--TSDNTSLNVGLDRFYAALNEASAQPQDIAYR 119 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 +T+I +E +V FN +++++ R D ++E ++ ++ L +N +++ S+ Sbjct: 120 QTIISQSEAMVDRFNNLSQQLESQRKQVDGQLEASVNKANTLMANLASLNRSLREANGSE 179 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + LD RD L ++S ++ I+T ++ + V G L + + Sbjct: 180 AEKASLLDARDATLTELSSMMDINTTYHSDGSVSVSLDQGQPLVNGASASQLMKNSD--- 236 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + S+ + G I +L RD + + +LD MA F+ + Sbjct: 237 ------GGLVLKRGESTFTLGSSAGGTIGGMLNYRDGHLQSLERELDVMAYSFATQFNAQ 290 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + G + I S+P L G+ + N Sbjct: 291 HTQGVDLNGKQGQPLF--------GGVDQIEGAAKNLTLLVSDPKALAFAGNGTVDEPGN 342 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGIN------TNVTLLEYARNSIGWLEKNRSDS 418 NL L N +A TL G S S Sbjct: 343 SDNLEALIGLKNAPITLDKAKLSETDLAQYGDTIDKVNGKTLFTAYTGLCGDWAIKTSQS 402 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ H + + GVNL EE L++ Q Y + K+I ++L + Sbjct: 403 KTDMASAESQVKHAENARDSVSGVNLDEEAVSLMQFTQMYQANAKVISTAQQLLDITMGM 462 >gi|90422625|ref|YP_530995.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisB18] gi|90104639|gb|ABD86676.1| Flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] Length = 490 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 151/489 (30%), Positives = 252/489 (51%), Gaps = 10/489 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 M+L N A++ A Q A++ RNI A Y R++ + V V + Sbjct: 1 MTLTVALNSARSSLMAAGAQAAAVSRNIAGAKQDGYSRKNVLLATMPGSGVFVEGIQRAA 60 Query: 60 KN-MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +F+ VL A S++ Q L + + D + SP ++KLR +L+ + Sbjct: 61 SAGLFNNVLKAASTSAMQDTLYNGLQKIAAATIDDPELDQSPAAQLAKLRTALQQSATAP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 L + + A+ V + N + + VQ +R DAD E+E ++ + + L++ VN +I Sbjct: 121 DNVTLAQAAVTAAKGVAASLNDATKTVQGVRLDADAELETSVATINQLLAQFETVNTSIV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + D D+LD RD +L K+S+ +GI+ R NNDMV+YT G T+FE R ++F+ Sbjct: 181 KGTITGADTTDYLDLRDSILSKLSQEVGITVSTRANNDMVIYTDSGVTMFEKTARSVSFD 240 Query: 239 KMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + ++ T+ N ++IDGV V ++ V GK+ L +RD +QNQLDE+AR L Sbjct: 241 QTYGFSPTTTGNAVYIDGVPVIGASAVMPVQSGKLAGLAALRDDTTVSYQNQLDEIARGL 300 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFL 351 + +F+E+D + +VPGLF G + I+ + V+ +P+ L Sbjct: 301 VEAFAERDQSGASLPDVPGLFTYPGAPAIPGSGVIAVGLAGTITVSASVDQSVGGDPTRL 360 Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 RDGG S + + +N AGY + D ++ FDP A N L+++A +S+ W Sbjct: 361 RDGGISGNPAYTYNTTGHAGYFARLQQMADGLTQSRAFDPAALAKPNTGLIDFAGSSVSW 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 LE R + D SQ + +++ SN GVN+ +E++F+++VE++Y+ S+KLI D+ Sbjct: 421 LESQRKGASDESTYSQTLLERSADALSNVNGVNMDDEMTFMLQVERTYSASSKLISAVDQ 480 Query: 471 MLQTLLEGV 479 ML+ LL V Sbjct: 481 MLKDLLAAV 489 >gi|189426324|ref|YP_001953501.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ] gi|189422583|gb|ACD96981.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ] Length = 465 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 72/495 (14%), Positives = 154/495 (31%), Gaps = 45/495 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L AV + NI N + Y R+ + + V Sbjct: 1 MGLSAVLQIGTTGMRVYQVATEVVSENIANVNTPGYSRQRIVLETAEASTHNGFPLGSGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + K L S+ G E + ++ + IS S Sbjct: 61 NVAAVERYYDALLQKQLVNASTTSGYDSKKSEVLQQIEPIF-NEVALDGLGAAISDYFSS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S N S + + V++ + + F+ +A V ++ ++ + LS++ Sbjct: 120 WQDLSVNPSGNAERQAVLNQGQALADQFHYAAGTVSDAITTQNESLQPLTDEMNNMLSDI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD-----GT 225 +N IK +A++ DQRD L++++SE + +S ++ V +D Sbjct: 180 ARLNGQIKLTELVSGNANEMRDQRDYLVRQLSEKLAVSFTENSDGSTDVSYTDATGTYSL 239 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S + + + A G++ A L +RD+ + Sbjct: 240 VSGSSAGSFSLVNSGTTLPDGSARLSVQVTPAGGGAAATIAPTTGELGATLTMRDTTLQG 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + +++D +A +I + ++ F Sbjct: 300 YLDEVDALAFTMINQVNAVHSAGYGLDSTQNNFFTPVAVSTGAAESM------------- 346 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 ++ + N +A +N + Sbjct: 347 ----------------ALAFTDINKVAAAQGPLPIATGDNRNALALATLNRTNGYSDDYN 390 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + ++ + + ++ + GV+L EEL+ L+K ++SY KLI Sbjct: 391 KLVAQVGLDVQNAATVVKQDAAFMKQLNTLRDSNSGVSLDEELTDLMKYQRSYQACAKLI 450 Query: 466 MFTDKMLQTLLEGVK 480 ML + V+ Sbjct: 451 TTAGDMLDIAVNLVR 465 >gi|311070047|ref|YP_003974970.1| flagellar hook-associated protein FlgK [Bacillus atrophaeus 1942] gi|310870564|gb|ADP34039.1| flagellar hook-associated protein FlgK [Bacillus atrophaeus 1942] Length = 507 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 77/516 (14%), Positives = 165/516 (31%), Gaps = 54/516 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATSSFPAVSKNAEKVAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ G E + ++ ++ + + Sbjct: 63 QMGTGVEAKSVERIRDSFLDYQYRLQNNNSGYYDTRAKALGQMEGVM-NETDDSGLSSVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S++ + N +ED V ++V FN + + ++++ E++ + ++ Sbjct: 122 NSFWKSIQELTNNSNEDSARSVVSQKGQDVAGTFNHISESLTNVQSNLKTELDSSVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS+L +N I S + + DQRDVLL K+S ++ I + + +S+G Sbjct: 182 SLLSQLNSLNQQIAQVEPSGNLPNGLYDQRDVLLDKLSSLVDIKVSYNKSGGNALASSEG 241 Query: 225 TTLFETVPRDIN------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T E + ++ ++ + S G + Sbjct: 242 TVSIEILDKNKQSLGTVLDGKDYKATELKVNYDEETGLAKSVSIGDSEIQADSFSSNGSL 301 Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +Q + P + LD MA +F+E + G D Sbjct: 302 LGFIQSYGYVTADGEEKGIYPEMLSDLDNMALEFAKAFNEVHRNGLTASGEQGGDFFDFS 361 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 N ++ + S + S N LA Sbjct: 362 SGEANPAKGAAAKIKVTDSIKNSKGQNIAFSLSGEPNDNSNATKLASVLTGNITIS---- 417 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 T+L+Y + IG L +++ L ++ N + V+ Sbjct: 418 -----------GKKTTVLDYYASLIGELGIKTQEANRLAANTETQLNAADLNRQQMSAVS 466 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ +I+ + +YN + +++ D+ML ++ G+ Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDEMLDKVINGM 502 >gi|325291963|ref|YP_004277827.1| flagellar hook-associated protein FlgK [Agrobacterium sp. H13-3] gi|325059816|gb|ADY63507.1| flagellar hook-associated protein FlgK [Agrobacterium sp. H13-3] Length = 492 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 157/492 (31%), Positives = 252/492 (51%), Gaps = 12/492 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN +Q +NI N N NYV+R + + ++V Sbjct: 1 MSLTSAMNTAQSIFNNTGKQTDVTSKNIANVGNANYVKRTAILGTTMSGASIVANGRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + +S Q+ + + + + + Y +SP Y+ +L SL+ Y+ S+ Sbjct: 61 ESLLRQTISSASLASGQKTVLTGLEEMKSLFGGNDYESSPATYMKELLKSLDGYASKPSD 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L T + +A +V + N ++ E+Q +R ADKE+ L++ L L++ N+ +K + Sbjct: 121 SALAATAVTSAVDVANSLNKASSELQAMRLRADKEMSLQVDKLNGLLAKFEEANNEVKAQ 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA + D LDQR+ LL+ IS IIGI+ + R NND+ +YT+DG TLFE VPR + F+ Sbjct: 181 TAIGGNPSDALDQRETLLKDISSIIGINVVNRENNDVALYTADGATLFEVVPRKVTFKAQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 Y T N I++DGV + ++ GS +G ++ L+Q+RD + P Q+QLDE+AR LI Sbjct: 241 PGYDATVTGNAIYVDGVAIKASSGSNTTAEGSLQGLMQVRDDLAPTMQSQLDEIARGLIT 300 Query: 300 SFSEKDPI---------AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 F+EK + P + L I+ + NP Sbjct: 301 MFAEKPASPTSTLPKMPGLFTYGSPAATTIPASGVVSPGLAASITVNPALIISKGGNPEL 360 Query: 351 LRDGGSVSKKFLWN--VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LRDGG ++ N G+ LI+ Y +F+ F I+TN ++L+Y NS+ Sbjct: 361 LRDGGINGTAYVINSTTSGGTGFSALIDSYVTAFDAPMNFAASTRIDTNTSILKYGTNSV 420 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 GWLE+ RS + + ++ + SYSN V+L EELS L+ +EQSY + KL+ Sbjct: 421 GWLEQERSGATSANEAKSALYERSATSYSNNTAVSLDEELSLLMDIEQSYKAATKLVTTI 480 Query: 469 DKMLQTLLEGVK 480 D ML++L++ V+ Sbjct: 481 DDMLKSLMDMVR 492 >gi|148558589|ref|YP_001258003.1| flagellar hook-associated protein FlgK [Brucella ovis ATCC 25840] gi|148369874|gb|ABQ62746.1| flagellar hook-associated protein FlgK [Brucella ovis ATCC 25840] Length = 464 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 230/484 (47%), Gaps = 25/484 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSL--------------RNDADREIADSVANINDLLAKFEKANQDVVGG 166 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 167 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 226 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD Q QLDE+AR L+ Sbjct: 227 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRD------QMQLDEIARGLVT 280 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 281 VFAESDQTGSSPDQTGLFSWSGSPAIPGADLSAGIAGTIEVSVPFIASEGGSALLLRDGG 340 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE R Sbjct: 341 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 400 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V + + SN GV++ E++ L+ +E SY S++++ ML L Sbjct: 401 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 460 Query: 476 LEGV 479 L V Sbjct: 461 LNAV 464 >gi|121601813|ref|YP_989382.1| flagellar hook-associated protein FlgK [Bartonella bacilliformis KC583] gi|120613990|gb|ABM44591.1| flagellar hook-associated protein FlgK [Bartonella bacilliformis KC583] Length = 456 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 125/481 (25%), Positives = 225/481 (46%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M+L + N A+N + QF + +NI A + NY RR + P V R ++ Sbjct: 1 MALSSALNTARNSLKATTSQFDVVAKNIAGARDPNYTRRTSYLESGPRGAVHVAVRRDDS 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS L + + D ++NSP+ +S + +L++Y+ + + Sbjct: 61 PFLLDNYLVKSSQAAAAGSLANGLHRLAEIHGADGFSNSPSQLLSDFQKALQAYANDPDQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G +D A ++V N RE++K+R DAD +I+ + ++ L + ++ + + Sbjct: 121 RAAGDAAVDRARDLVNALNKGNREIEKLRNDADSDIQDSVDHINDLLQKFHDLDQKVVQE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + DA+ ++DQRD +L+++S+ IGI+T+ + +Y DG+TL++ PR + FE Sbjct: 181 KNAGRDAYSYMDQRDAVLKQLSQEIGINTVSHQDGSTSIYGMDGSTLYDKSPRKVTFESS 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 NS +F+DGV + + G + LL++RD + P +Q QLDEMA L+ Sbjct: 241 NSLPAGVAGKQVFVDGVPLGHPSFVEPNGGGNLGGLLKVRDEMAPQYQKQLDEMASALMS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F P LF+ + + G+S I +NP + SN Sbjct: 301 IF----------PGPPPLFLDSDKPEGEIGPMVGLSGRIKLNPIFDSNTP---------- 340 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + I D+F++ F G+ T +L+ + +NS+GWLE RSD+ Sbjct: 341 -----GGGPEHFGKDIQSLVDAFDQKREFGSDTGLATEQSLMSFGKNSMGWLEGVRSDAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F +E+ SN GVN +E++ ++++EQ+Y + ++I KML L+ + Sbjct: 396 KNAKYQGTMFARAAEALSNETGVNTDDEMAVMLQLEQAYAATTRIISTVGKMLDDLMIAI 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|15887920|ref|NP_353601.1| flagellar hook-associated protein FlgK [Agrobacterium tumefaciens str. C58] gi|15155516|gb|AAK86386.1| flagellar hook associated protein [Agrobacterium tumefaciens str. C58] Length = 492 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 159/492 (32%), Positives = 254/492 (51%), Gaps = 12/492 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN +Q +NI N N NYV+R + + ++V+ Sbjct: 1 MSLTSAMNTAQSIFNNTGKQTDVTSKNIANVGNANYVKRTAILGTTMAGASIVSNGRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q + S + + ++Y +SP +Y+ +L SL+ Y+ S+ Sbjct: 61 ESLLRQTISSSSLASGQSSVLSGLEEIKSIFGGNNYESSPANYMKELLKSLDGYAAKPSD 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L T + +A +V + N ++ E+Q +R ADKE+ L++ L L++ N+ +K + Sbjct: 121 AALAATAVTSASDVASSLNNASSELQGMRLRADKEMSLQVDKLNGLLAKFEEANNEVKAQ 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LDQR+ LL+ IS I+GI+ + R NND+ +YT+DG TLFE VPR + F+ Sbjct: 181 TAIGGDASDALDQRETLLKDISSIVGINVVNRPNNDVALYTTDGATLFEIVPRSVTFKTQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 Y T+ N I+IDGV + + + G ++ L+Q+RD + P Q+QLDE+AR LI Sbjct: 241 PGYDATTTGNAIYIDGVALKAGTGTNTTAAGSLQGLMQVRDDLAPTMQSQLDEIARGLIT 300 Query: 300 SFSEKDPI---------AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 F+EK + P + L I+ + NP Sbjct: 301 MFAEKPADPTSGLPNMPGLFTYGSPAATTIPPDGVVSPGLAASITVNPALIISKGGNPEL 360 Query: 351 LRDGGSVSKKFLWN--VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LRDGG ++ N G+ LI Y +F+ F I+TN ++L+Y NS+ Sbjct: 361 LRDGGINGTDYVINTATSGGTGFSALIRSYVTAFDAPMNFAASTRIDTNTSILKYGTNSM 420 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 GWLE+ RS + + ++ ++SYSN V+L EELS L+ +EQSY + KL+ Sbjct: 421 GWLEQERSGATSANEAKGALYERSAKSYSNNTAVSLDEELSLLMDIEQSYKAATKLVTTV 480 Query: 469 DKMLQTLLEGVK 480 D+ML++L++ V+ Sbjct: 481 DEMLKSLMDMVR 492 >gi|157959896|ref|YP_001499930.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] gi|157844896|gb|ABV85395.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 166/486 (34%), Gaps = 36/486 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVV 53 MS+ N + N + + N+ NA Y R+ + + S V V Sbjct: 1 MSM---LNIGMSGLNASMAALTATSNNVSNAMVPGYSRQQVVMSSVGNGTYGSGSGVMVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + +S +G S+ E + + NS + + L SL S Sbjct: 58 GVRRISDQYQVTQQWNATSNLGFAETQASYFGQVEQIFGSE--GNSISAGLDLLFASLNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + +E L + V++ A+ + Q FN+ + V + +I + L ++ Sbjct: 116 AMEQPNEIALRQGVLNEAKALTQRFNSISEGVHTQVNQIEGQIGASAKEINAQLETISSF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I+ AS + LD RD + +S+II ++ + NN + + G L Sbjct: 176 NEQIQASNASGNVPLSLLDARDAAIDDLSKIIDVNIVHDANNMVNISLVQGQPLLSGTTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++ + G + ALL RD+ + +E+ Sbjct: 236 SKIQVSPDPSNPLFSQLSVQFGQSSFPLDESA---GGSLGALLDYRDNSLVESIAFNNEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A+ + F+ + + IS + Sbjct: 293 AQTMADEFNTILKAGTDLNGNTPTQDLFTYDPTNPAGTLKISADFKPDMLAFGQ------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + +K+F FD + + T+ + + IG L Sbjct: 347 ------------DGTPGDNSNLKALVELADKSFTFDS---MGIDATMGDAFASKIGELGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + ++ V +++T GVN+ EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAKMAKETAEKVQIEAQSQWASTSGVNMDEEGVNLIIYQQSYQANAKVISTADQLFQ 451 Query: 474 TLLEGV 479 T+L + Sbjct: 452 TILNSI 457 >gi|258622494|ref|ZP_05717516.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573] gi|258585194|gb|EEW09921.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 153/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 N A + N +N+ N + + R+ + T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVNSVRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + + +S + + E + + + L +L + Sbjct: 65 ITDQFLVKQIWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FN+ + + + + + + + + + +N I Sbjct: 123 PESIPYRQQIINESEALARRFNSLSESMNNQHKNMNDQRMAAVKHANSLMVNIAKINKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S++I + T + + + V + G L Sbjct: 183 TEMEGTGGNPAQLMDKRDELIGELSQVIEVKTTDQLDGSIQVTLASGQPLVMGGEYGQLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + S S G++ A+ ++ ++ Q +++MA+ L Sbjct: 243 AIPDPDDPQLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + PG + L Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIQ 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 K+ + + G D++ NK N+++ + + +G Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVTI----TGFGNISINDAFTSMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + ES N VN EE + L+ +YN + K+I +++ ++L+ Sbjct: 396 ADSDYQTRASMNQQAIESRDNVSAVNSDEEAANLMTFSNAYNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|56964843|ref|YP_176574.1| flagellar hook-associated protein 1 FlgK [Bacillus clausii KSM-K16] gi|56911086|dbj|BAD65613.1| flagellar hook-associated protein 1 FlgK [Bacillus clausii KSM-K16] Length = 528 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 66/522 (12%), Positives = 151/522 (28%), Gaps = 46/522 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 MS + N ++ N+ NA Y R+ + Sbjct: 1 MSTFFGMETMRRAVNTNQTAIQTVGNNVANAKTPGYTRQRVNLQATGGYPATGVWTQPAM 60 Query: 49 ------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V V + D+ A + G + E + + + + + Sbjct: 61 NGRIGSGVQVTGIERIRDQLLDRQYRAEAHVEGAAFIQYKILERMEGLYNEAPSDTTTSR 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + S +++ + V F R Q + E EL + Sbjct: 121 LSDQFDSFWNGWKELASGKESQAVLLEQGKAVTDAFTHLQRSFQTEMNMLETEAELTTAK 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + L +L N I+ +S ++ D +D LL ++S ++ I N Sbjct: 181 VNQILEQLHETNKDIRAAESSGQVPNELYDAQDKLLDQLSSLVPIQVSRSPNPQEHAAAG 240 Query: 223 DGTT----LFETVPRDINFEKMNSYTV---TSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 L I T + + G + G++ L Sbjct: 241 AEGPYKVELKLGGSETITLVDATEEAPQLLTLQEGMQWTVGDSNQPFTYNGAGGGELVGL 300 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + V ++ +A+ ++ A + + G D Sbjct: 301 QKAHERVGQEL-EEIKALAQTFAKEVNQIYAFAYSEQGGFGQEFFTIHLDDAGAFSHISV 359 Query: 336 ET----------ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS---- 381 + + P + + + + N + DL+ ++ Sbjct: 360 NSELSNNPKALATARFNEEGIKPEYKDEFAEKWAAWENDKDNEEAFRDLLAFLNEADHFV 419 Query: 382 ------FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++ + + ++ R+ +G L D S + + Sbjct: 420 GGKMIVEGDVDVAKEISRLEDSAAIMGKYRDMMGKLGVETKSQRDQTEASNARLANTESN 479 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GV+L EE++ LI+ + +YN + + + D+ML ++ Sbjct: 480 RMSISGVSLDEEMTLLIQFQHAYNAAARTMTAMDEMLDQIIN 521 >gi|260574381|ref|ZP_05842385.1| flagellar hook-associated protein FlgK [Rhodobacter sp. SW2] gi|259023277|gb|EEW26569.1| flagellar hook-associated protein FlgK [Rhodobacter sp. SW2] Length = 485 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 92/492 (18%), Positives = 181/492 (36%), Gaps = 21/492 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A + A + +S+ + N+ NA + Y RR+ + + V V Sbjct: 1 MSLSASLSNAMSGLTASSRAAEVVSSNVANAMTEGYARREINLAALSLGGAGKGVVVTGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +G + +F E +S ++ +L S Sbjct: 61 NRVVNQSLLADRRVAEAGVGDRDARTAFLQRLESTLGTSDSASSVLGRVAAFDSALIEAS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V+ A+ + N ++ ++Q RA AD +IE E++ L L+ + +N Sbjct: 121 SRPESEARLSNVLVAAQSLASGINAASTDIQAARASADDQIETEVATLNAGLARIAELNV 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I+ + DA +DQR L+ +++ I+ + + R +N + +YT+ G L + I Sbjct: 181 QIRAQFGVSRDATALMDQRQQLVDQLASIVPLREVDRGHNQIALYTTGGIQLLDGRAAVI 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVV------VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 F + T + G+ +S S + G + A +RD + P Q + Sbjct: 241 EFTPVGVVTPDMTLASGSLSGLTLNGRSLPTSGAASMIGGGSLAAHFAVRDELAPAAQTK 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRS 346 LD +AR L+ F++ + PGLF G + Q ++ V+P Sbjct: 301 LDAVARDLVERFADPAIDTTRAPGDPGLFTDAGSAFVATDEVGLSQRLALNGAVDPAQGG 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 LRD L+G L++ + + + + Sbjct: 361 ALWRLRD------GMGAVAPGLSGNSALLSSLQTALAAPRAPVSGGFMPGARSFSSLNAD 414 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 I + R + + + + GV+ +E+ L+ +EQ+Y+ + ++I Sbjct: 415 VISGVSTARLGAEAESSFATARATALQQQELEN-GVDTDQEMQKLLLIEQAYSANARVIQ 473 Query: 467 FTDKMLQTLLEG 478 M+ L+ Sbjct: 474 TAGDMIDILMGI 485 >gi|167626161|ref|YP_001676455.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] gi|167356183|gb|ABZ78796.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] Length = 457 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 167/486 (34%), Gaps = 36/486 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVV 53 MS+ N + N + + NI NA Y R+ M + S V V Sbjct: 1 MSM---LNIGMSGLNASMAALTATSNNINNAMVPGYSRQQVMLSSVGNGVYGSGSGVMVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +S +G S+ E + + NS + + L SL S Sbjct: 58 GVRRISDQYEVAQLWNTTSGLGYANTQSSYFGQVEQIFGSE--GNSISAGLDLLFASLNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + +E + V++ A+ + Q FN+ + + + +I + L + + Sbjct: 116 AMEQPNEIAHRQGVLNEAKALTQRFNSISEGLNSQVTQVEGQINASAKEINTQLETIASL 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ AS + LD RD + +S II ++ + ++ + + + G L Sbjct: 176 NAEIQSSNASGNVPLALLDARDSAIDDLSSIIDVNVVEDSSGMLNISLAQGQPLLSGTTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + I ++ + G + AL+ RD+ + +DE+ Sbjct: 236 SKLEVTPDPSNPKFSQISIQFGQSSFPLDETA---GGSLGALIDYRDNSLVDSMAFIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + F+ + + S Sbjct: 293 AMTMADEFNAVLAGGTDLNGNTPTQDLFTYDPTNPA------------------GSLKMT 334 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G ++ + G + D NK+F F + + T+ + + IG L Sbjct: 335 AGFNAEMLAFGKDGTPGDNSNLKELVDIANKSFTFSS---MGVDTTMGDAFGSKIGELGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + ++ + + +++T GVN+ EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAQMSKTTAENLQMEAQKQWASTSGVNMDEEGVNLIIYQQSYQANAKVISTADQLFQ 451 Query: 474 TLLEGV 479 T+L + Sbjct: 452 TILNSI 457 >gi|56695116|ref|YP_165463.1| flagellar hook-associated protein FlgK [Ruegeria pomeroyi DSS-3] gi|56676853|gb|AAV93519.1| flagellar hook-associated protein FlgK, putative [Ruegeria pomeroyi DSS-3] Length = 483 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 87/487 (17%), Positives = 171/487 (35%), Gaps = 13/487 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---TISPENVTVVTQRS 57 M++ A N A + AS+ NI NA Y RR TI V ++ Sbjct: 1 MTISAALNSALSGLTAASRATGVASDNIANALTPGYARRSLEVAGNTIGGAGVRILGVVR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + +A G + F + + + S + I++ SL + + Sbjct: 61 NSDPVLLASRRGADAAQGYADGVSGFHTRMARLVGNVNDPRSVPNLIAEFESSLIAAAST 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 S V A E+ N ++ +++ R DAD+ I ++ L L + +N I Sbjct: 121 PSVQTRLDAVATAASELATALNAASNGLREARNDADRSIGQQVDRLNTVLQNVETLNGRI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + S D+ LDQR L+ +++ +I ++ + R++ + ++T G L + ++F Sbjct: 181 QSVKLSGGDSAPLLDQRQKLIDEVNTMIPVNVVARDHGSVALFTDGGAILLDGPAAQLSF 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + G+ ++ SA+ G + A ++RD + Q LD Sbjct: 241 TPTLQTMPHMTLENGLLSGLELNGMPLRLSGPTSAIRGGSLAAAFEVRDDLAIEAQQDLD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +AR LI F + P + +P Sbjct: 301 AVARDLIERFEAP---GLDPTAAPTDAGLFTDNGARFSASAQTGLAGRLKLNASVDPGQG 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + V G IN + + ++T + + + Sbjct: 358 GQSWRLRDGLGAAVPGAVGNAQQINAFHQALTATRTPSDPRFGTGDMTANQVGAALLSRV 417 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +N S + + + + + GV+ EL L+++EQ+Y + ++I +M Sbjct: 418 AQNESLATERLTFASASRTEMQKLELEQ-GVDTDVELQMLMQIEQAYAANARMIETVGEM 476 Query: 472 LQTLLEG 478 + TLL Sbjct: 477 MDTLLRL 483 >gi|260779341|ref|ZP_05888233.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] gi|260605505|gb|EEX31800.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] Length = 457 Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 70/481 (14%), Positives = 150/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57 N A + N +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVSNINTPGYSRQQALMASVGGTKHDKLSPGLGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K A +S S + E S + + L +L + Sbjct: 65 VTDEFLVKQTWATNSLSAYATRYSSTMSQLENTLG--ADGFSLSAGLDTLFSALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + + IS+ +S + VN I Sbjct: 123 PESVPYRQQIINESEALARRFNTLTESLSHQHKDVNDQRNAAISHANSLMSNIADVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RD L+ ++S+++ + T + + + V S G L + Sbjct: 183 VEMEGTGGNPAQLMDTRDALIGELSKVVEVKTTSQADGSLQVTLSSGQPLVMGGDAAVLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + P G++ AL + V+ +++ +D+MA+ L Sbjct: 243 AVPDPSDPYLADLHVEFGTQSFAITDT---PGGQVGALTDYQTEVLKPYRSAIDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + G + L Sbjct: 300 ADEFNALLVTGQDLNGNAGKPLFSYDPANPAAS--------------------LTITDLK 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + G D+++ NK +VTL + +G Sbjct: 340 PEELALSGDGNPGNADVLDSLIAVSNKAVSISGF----GSVTLNDAFAAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLSMSEQAMAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|229916660|ref|YP_002885306.1| flagellar hook-associated protein FlgK [Exiguobacterium sp. AT1b] gi|229468089|gb|ACQ69861.1| flagellar hook-associated protein FlgK [Exiguobacterium sp. AT1b] Length = 504 Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 69/502 (13%), Positives = 153/502 (30%), Gaps = 29/502 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------IS 46 S A+ + + N+ NA N Y R+ Sbjct: 3 STFMGLETARRSLSTHQWALQATGNNVANASNPGYSRQRLTLGMTEQLSVNFGGTKAGQF 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V T M D+ S ++ E + ++ N H + K Sbjct: 63 GTGVRGETLARIRDLMIDQQYRDESVKNAFYATKEAAFGRMEDI-INEPSENGLAHALDK 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 SL+ + N + V A + Q FN + + K++ D E + + Sbjct: 122 FWSSLQDLAVNPDDTGARSVVRQRALTLTQTFNYMSSSLSKVQEDLKAEAGVVTKKINDL 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L+++ VN I ++ D+RD + ++S+ I + + + + Sbjct: 182 LTKIGDVNRQIGDAEPLGVLPNELYDERDRYMDELSQYIEFERVPVDYTNGETRGNSQRV 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + I+ + T + + + V + + D + Sbjct: 242 AEGRIDIQISVPGTPTPTKITLVDGLT---GGVGKINDMEITDAAAGTTTLVFDDLPNGK 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 L +M G+ + +++ + D Q Sbjct: 299 LKALVDMYGSATGTETHDGAFTKMLKDLDVMAKEFTTAFNDLHKTFYDGNVQDNPRQTGI 358 Query: 347 NPSFLRDGGSVSKKFLW---------NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + D +V+ + G + N F + Sbjct: 359 DFFIVGDAKTVTVNPTILSNLNLIAISKDQNIGDGSGALDLANLKNAQITFTGGSS-TAT 417 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 ++ +Y +N IG + S + +L + + + + + V+L EE++ +I+ + + Sbjct: 418 TSIGKYYQNVIGNMAVEASQNGNLAKSTFALLSSSDQRRQSVSAVSLDEEMTMMIQYQHA 477 Query: 458 YNISNKLIMFTDKMLQTLLEGV 479 YN + + I D+ML ++ G+ Sbjct: 478 YNAAARNITAVDEMLDKIINGM 499 >gi|262173360|ref|ZP_06041037.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] gi|261890718|gb|EEY36705.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] Length = 457 Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 154/481 (32%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 N A + N +N+ N + + R+ + T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYENHRPGMGVEVNSVRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + + +S + + E + + + L +L + Sbjct: 65 ITDQFLVKQIWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FN+ A + + + + + + + + +N I Sbjct: 123 PESIPYRQQIINESEALARRFNSLAESMNNQHKNMNDQRMAAVKHANSLMVNIAKINKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+++ + T + + + V + G L Sbjct: 183 TEMEGTGGNPAQLMDKRDELIGELSQMVEVKTTDQLDGSIQVALASGQPLVMGGENGQLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + S S G++ A+ ++ ++ Q +++MA+ L Sbjct: 243 AIPDPDDPRLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + PG + L Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIK 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 K+ + + G D++ NK N+++ + + +G Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVAI----TGFGNISINDAFTSMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + ES +N VN EE + L+ +YN + K+I +++ ++L+ Sbjct: 396 ADSDYQTRTSMNQQAIESRNNVSAVNSDEEAANLMTFANAYNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|163794165|ref|ZP_02188138.1| hypothetical protein BAL199_02089 [alpha proteobacterium BAL199] gi|159180779|gb|EDP65298.1| hypothetical protein BAL199_02089 [alpha proteobacterium BAL199] Length = 476 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 114/487 (23%), Positives = 196/487 (40%), Gaps = 18/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSLL A + A + RNI +A + Y R+ T+ V V Sbjct: 1 MSLLNAIYSASSGIAAAQAKIDVASRNIASASVEGYTRKTQETSTRVVDGRGGLVLVEQV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S + + +L F A E+ N+S + I+ L+ ++ + Sbjct: 61 TRNVNAQLQRDVREQTSVVEKLTILDDFLARFELEFGRPEDNSSISSKITDLKTKFQALA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + VI A+EV N + +Q +RA+AD +E + + + L + +N Sbjct: 121 TNPDQSTAQNDVISAAQEVALTLNNLSARLQALRAEADLRVEDSVDIINQALQNVQSLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + A+ D DQRDV + K+SE + I T R + + + T D L + + Sbjct: 181 EIGSRKAAGESTADLEDQRDVWISKLSEQMDIKTFERPDGKIAILTGDSQFLLDQEAVTL 240 Query: 236 NFEKMNSYTVTSESNPIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 F + + S N + +D G + + ++ G + LLQ+RD+ +P+ Q+QLD +A Sbjct: 241 TFVASTTVSAGSVLNDVMLDNGFMAPFSITNSFSGGTVSGLLQLRDTTLPLAQSQLDSLA 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L F A ++ AD I I V + + Sbjct: 301 FELAEQFDAITVGATTADLDLFTDAADAIPGAAAGFAAVIQVRSTVTGAELRDGTGGTFA 360 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEK 413 S L D F+ +F V G+NT + TL E+A I + Sbjct: 361 SSGVS-----------DSSLPLAIIDMFDTKQVFTAVTGLNTASSTLEEFAAQFISYQAN 409 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +D V N +SE ++ GVNL EEL+ LI++E ++ S +++ + L Sbjct: 410 QAADYESQLQFQDQVRNLLSERLTDDSGVNLDEELASLIQLEAAFAASARVLSSVQQALD 469 Query: 474 TLLEGVK 480 LL ++ Sbjct: 470 ELLGAIR 476 >gi|258625228|ref|ZP_05720140.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603] gi|258582475|gb|EEW07312.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603] Length = 457 Score = 209 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 153/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 N A + N +N+ N + + R+ + T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVSSVRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S + + E + + + L +L + Sbjct: 65 ITDQFLVKQTWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FN+ A + + + + + + + + +N I Sbjct: 123 PESIPYRQQIINESEALARRFNSLAESMNNQHKNINDQRMAAVKHANSLMVNIAKINKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+++ + T + + + V + G L Sbjct: 183 TEMEGTDGNPAQLMDKRDELIGELSQMVEVKTTDQLDGSIQVALASGQPLVMGGENGQLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + S S G++ A+ ++ ++ Q +++MA+ L Sbjct: 243 AIPDPDDPRLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + PG + L Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIK 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 K+ + + G D++ NK N+++ + + +G Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVAI----TGFGNISINDAFTSMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + ES +N VN EE + L+ +YN + K+I +++ ++L+ Sbjct: 396 ADSDYQTRASMNQQAIESRNNVSAVNSDEEAANLMTFANAYNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|253575863|ref|ZP_04853197.1| flagellar hook-associated protein FlgK [Paenibacillus sp. oral taxon 786 str. D14] gi|251844657|gb|EES72671.1| flagellar hook-associated protein FlgK [Paenibacillus sp. oral taxon 786 str. D14] Length = 523 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 75/522 (14%), Positives = 174/522 (33%), Gaps = 50/522 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S ++ + ++ NI NA+ + Y R+ T Sbjct: 3 STFHGIETSKRALFVNTVSMQTLGHNIANANTEGYTRQRVNLTEANPIWAMGMTKSAQPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D + +G +L S + + ++ N + + Sbjct: 63 QLGTGVEYTSITRVRDTFLDTQFRRENQMLGSWEVLNSSMTAIQNI-INEPSGNGLSAVM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +S E+ +++ S V A +V + + +R D + I+ ++ Sbjct: 122 DDFWNSWETLNRDPSLLSARVAVAGAASNLVDTLKHISESLNNLRNDINTNIDKKVLEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L + +N I+ + A+D+ DQRD+LL ++S I+ + N + + ++ Sbjct: 182 NILDNIARLNVLIRDNESFGDHANDYRDQRDLLLDQLSTIVDVQYTEDENGMVNITSAGV 241 Query: 225 TTLFETVPRDINFEKMN---------------------------SYTVTSESNPIFIDGV 257 L + N T+ + + + Sbjct: 242 NVLTGDTVTPLTAANANTATAGQLNGYVKSLQETDLIRNQLNGLVSTLVTGDIKVTLSNG 301 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 V+S+ A+ + + + V +++ V++ F+ + + Sbjct: 302 YVTSSDIVALNDVTVDGMGTVAAGTVIPAGSKITSSMDVMVKGFNGLHQLGYSLTKPSST 361 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 I + D + I VNP ++ + + N + G D+ N Sbjct: 362 GIPFFVSDSGT----FSIDDIKVNPDILADTNKIAASSQYEVINGVNTT-IRGNSDIANA 416 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + F F + T +Y R L S++ + + + +++ Sbjct: 417 IAGLRDAIFKFPDALTSLSEGTTDDYFRALTADLGIRASNTERNYENERTMTDNLQILRQ 476 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GV++ EEL+ +I+ +Q+YN + + + D+ML ++ + Sbjct: 477 SVSGVSMDEELADMIRFQQAYNAAARNMTVVDEMLDRVINSM 518 >gi|315649834|ref|ZP_07902917.1| flagellar hook-associated protein FlgK [Paenibacillus vortex V453] gi|315274808|gb|EFU38189.1| flagellar hook-associated protein FlgK [Paenibacillus vortex V453] Length = 552 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 63/517 (12%), Positives = 161/517 (31%), Gaps = 42/517 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + + N+ NA+ Y R+ T Sbjct: 3 STFHLLEIGKRGLIAQQAAINTAGHNVTNANTPGYSRQTTRLVAANPIAFPGMQRSQAAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + R + D ++ + + Q + E + ++ ++S + I Sbjct: 63 QLGMGVEADSIRRVRDFLLDIEYRNQNTNLSTWSVQQETLSNIEGIF-NEPSDSSLSASI 121 Query: 105 SKLRDSLESYSKNLSED--ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 ++ + ++ SKN S+ V A + + FN ++ + + I+ +++ Sbjct: 122 AEFWTAWQTLSKNPSDTDLSARMAVQQKAIALTETFNHIYSQLDTLSNNLTSRIDTKVAE 181 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 ++ ++ + +IK +A+D D+RD+L+ ++S + ++ + V Sbjct: 182 ANNYIDQVAELTQSIKRIEGLGDNANDMRDKRDLLIDQLSLLGNVNVTETGDVYQ-VTFG 240 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + I + T + + V V A ++ ++ Sbjct: 241 NQVVVDDMTSTPITNAIAGTLTGGEIAGYVTSRDVHVQGYITQLNIMANTLATGKVEVTL 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNS---------------------ENVPGLFIAD 321 + + +A ++ F++ Sbjct: 301 PAGTILPPGVNIPNAVMDANNPRKLAVDTKHTVDGLNGLHKLGYTLNEPATTGSDFFVSA 360 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + ++ +K G LI + Sbjct: 361 NGGPITAGNMRLSQNIQSDLKNIGASLRTEMKTNPDGTTSEVVLKGNGGMALLIAGLSER 420 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + Y ++ I L + S++ + ++ H + Sbjct: 421 TFSFNPNNSNGAVTDITNFEGYLQSVISKLGTDSSNAIKMVENGTLLVEHADTLRLSISS 480 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EE+S LI+ + +Y+ S++++ D+ML L+ G Sbjct: 481 VSLDEEMSDLIRFQHAYSASSRVVTTIDEMLDKLING 517 >gi|325295212|ref|YP_004281726.1| flagellar hook-associated protein FlgK [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065660|gb|ADY73667.1| flagellar hook-associated protein FlgK [Desulfurobacterium thermolithotrophum DSM 11699] Length = 451 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 77/482 (15%), Positives = 160/482 (33%), Gaps = 33/482 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MSL + A + RNI N Y R + VTV T R Sbjct: 1 MSLFESLSIASQALLSNKAAINVTNRNISNVYTDGYSRETPVFADIPGTGVTVETVRRIF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + E + +D + + ++ +++ + Sbjct: 61 NKAYFTRYISENQNNKGLSSYKDILEQIESVF-NDLQGSGFSQELTDFFNAMNDVAVKPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + ++ A+ +V S + +I+ +I+ E++ L L +L +N +K Sbjct: 120 DIAARSELLAKAQALVGRIRDSYSTLSEIKNTTVAKIKDEVTQLNNLLEKLAGINKDLKI 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + +LD+RD L +IS +I +++ + + +YT+ G L K Sbjct: 180 YASDPERVNQYLDERDKTLTEISNLIDTKAVIKEDGTVDLYTAKGFALVLGNEAK----K 235 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T + + GV ++S + G +K + + L+ Sbjct: 236 ISFETDGNGDPILKSSGVDITSELKNGTIGGYLKGISY-----LNKVLGNLNTFTTNFAD 290 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + G+ I+ + + S Sbjct: 291 EINAQHKAGFDLYGETGIDFFKAENGAPTIDASNITLNFEDPKKIAAAESKDYLNADNG- 349 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDS 418 + + D V + + EY + I + + Sbjct: 350 --------------------NIKKLIALKDNVWTNLGDKSFSEYYNTDIIVAIGAELEST 389 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 DL S V IS+ VN+ EEL L + +++Y + K++ TD++LQT+L Sbjct: 390 KDLLTNSDFVLQAISDKMKELSSVNMDEELLNLTRYQRAYEAAAKVVNVTDELLQTILGM 449 Query: 479 VK 480 V+ Sbjct: 450 VR 451 >gi|225851146|ref|YP_002731380.1| flagellar hook-associated protein FlgK [Persephonella marina EX-H1] gi|225645441|gb|ACO03627.1| flagellar hook-associated protein FlgK [Persephonella marina EX-H1] Length = 485 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 159/495 (32%), Gaps = 25/495 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MSL + A + NI N Y R+ P V + T Sbjct: 1 MSLFYSLSIAGQSLLTHKNAINTTNSNISNVYTDGYSRKIPQLANIPTGGVELKTVERAF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + ++ + E + +D + +++ +S + N Sbjct: 61 NQAYFNRYVNTNNLKTGYENYKDILQQVESVF-NDIQGSGFADELNQFFNSFNDIAVNPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + AE +V S + I+ I ++ L ++ VN I+F Sbjct: 120 DIAARYSALSKAEALVGRIRNSYETLTDIKEKTSLSIRDNLNRLNDLTGQIATVNKNIRF 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 TA +++LD+RD LL++IS +I + R++ + + T G L + Sbjct: 180 YTADPAKRNEYLDERDRLLKEISSLIDVKVTFRDDQTVDISTVKGHPLVIFDRNIPLTYE 239 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +S I +G ++ G ++ + + N+L++ VL Sbjct: 240 TDSNGDP----VIRHEGTDITFLFDKGKIGGYLQGI-----KKINESINKLNDFTTVLAM 290 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD-----------NKLCQGISETICVNPQYRSNP 348 +++ + G+ + S+ Sbjct: 291 VVNKQHRAGFDLNGNTGIDFFTIDPSSNKNNLDASNIVVGITDPESIAAASDPAYTNSDN 350 Query: 349 SFLRDGGSVSKKFLW--NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + ++ ++ + N + E+ + Sbjct: 351 TNIKKIIALKDDITGVLTAAEETTLSTTGSLTIGGITYTLNSFDSYTFIKNKSYSEFYSS 410 Query: 407 -SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 I L + +L+ + ++ + VNL EEL L K++++Y S K+I Sbjct: 411 EMIAPLGFEINRVENLYQEQNLILETVDSKMKEISSVNLDEELINLTKLQRAYEASAKII 470 Query: 466 MFTDKMLQTLLEGVK 480 TD++LQTLL VK Sbjct: 471 NVTDELLQTLLGLVK 485 >gi|284989567|ref|YP_003408121.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus DSM 43160] gi|284062812|gb|ADB73750.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus DSM 43160] Length = 482 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 61/493 (12%), Positives = 151/493 (30%), Gaps = 37/493 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------- 48 S N A+ + + +NI N + Y R+ Sbjct: 3 STFGGLNTARTALWASQRGLDVTGQNIANVNTDGYSRQRVELRAMGGTAVPAIHSVSSPV 62 Query: 49 --NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V ++ ++ Q + A E + + Sbjct: 63 GNGVDANQVDRIRDVFLERRGQVETARTAQLTVGNEALAQVEAAFR-EPGETGIRSMLDD 121 Query: 107 LRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + + +E + V++ + + T+ + + + + + Sbjct: 122 VWAGFSALANATDPTEPAVRSQVLERLDILASGMRTTRATLDQQWRQTRDNVVALAAEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 S + +N I+ T S ++ D+RD+L+ +++E +G +++ ++ + V Sbjct: 182 TTASSIADLNTQIRQATRSGLPTNELSDRRDLLVVQLAEKVGATSVAASDGMVDVIVGGT 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 T + + ++ N + V + + G + + + +P Sbjct: 242 TLVAGGSALGLRVAGVDDPDAVGAGNDPRV---VTAPGGTTLAVGGTAGGQMAVLSTTLP 298 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++N LD +AR L+G + + G N + + Sbjct: 299 SYRNALDGLARDLVGKINAVQAQGYDVYGASGAAEPLMDDGSGNPVVDLANVDAGNIRVR 358 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + P + + + L G D N + Sbjct: 359 VTRPELIAA-ATTAPGVLGAPSADGGNADAFFDLSL---------------ENGGVDATY 402 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 R + L S +V+ + + + GVNL EE++ ++ + +Y+ + ++ Sbjct: 403 RALVVALGVEASVVARDVAVQKVISTQVDAARESVSGVNLDEEMTNMLSFQHAYSAAARM 462 Query: 465 IMFTDKMLQTLLE 477 + D+ L TL+ Sbjct: 463 VTAIDEALDTLIN 475 >gi|312884828|ref|ZP_07744520.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] gi|309367480|gb|EFP95040.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] Length = 457 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 66/481 (13%), Positives = 151/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57 N N + +N+ N + Y R+ + V V + R Sbjct: 5 NIGLTGLNASRVALDVTAQNVANINTPGYSRQQALMASVGGPKHDKLSAGAGVEVPSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + K +S + + E S + + K ++L S Sbjct: 65 ISDEFLVKQTWQTNSIASYAERYTTNFSQLENTLK--ADGFSISTGLDKFFNALNDASVT 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 L + +I+ AE + + FNT + + + +++ + + +N+ + Sbjct: 123 PDSTPLRQQIINEAEALSRRFNTLTESLYNQHKEMSDQRTATVNHANSLMVNIADINNQV 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + LD+RD L+ ++S++I + T + + + + S G L Sbjct: 183 VEMRGTGGNPAQLLDERDSLIGELSKLIEVKTTKQADGSLQLSLSSGQPLVIGGDAGQIQ 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 ++ I V GK+ AL + ++ +++ LD+MA L Sbjct: 243 ALPDAGDPYLAKMQIEF---GVQVYPVPGAMGGKMGALNDYQTDILKPYRDALDDMASNL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + PG + + L Sbjct: 300 ADEVNTVLATGLDLQGNPGAALFEYDPANPAAS--------------------LNITSIT 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ G D++ NK N +L + + +G Sbjct: 340 PDQLAFSSDGNHGNSDVLKDLVALSNKAMAVSGF----GNTSLNDAFVSMVGKTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ + N VN EE + L+ ++N + K+I +++ +++L Sbjct: 396 ASSDYKAKSLLNEQAIAARDNVSSVNSDEEAANLMTFANAHNANMKVISTANELFESVLR 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|327478815|gb|AEA82125.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri DSM 4166] Length = 459 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 69/486 (14%), Positives = 149/486 (30%), Gaps = 36/486 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------TISPENVTV 52 MS+L+ + + + +NI N + + R T V V Sbjct: 1 MSVLS--QIGYSGVRASQIALTATGQNIANVNTPGFSRLAPEMHSVGGQTATSIGGGVQV 58 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + R + + ++ L S+ Q + E + + +S + + +L Sbjct: 59 SSIRRLSNDFQNQQLWRASTDKNYYGTSQQYLTALEGLIHSE--GSSVSVGLDNFFAALS 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S L + +I A ++ Q FN + + ++ + + Sbjct: 117 EASSTPESIGLRQQIIGEARQLAQRFNGLNGNIGTQLNALQGQRVAMVAEINGLSGNIAE 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I ++ D D R+ L++ +S+ GI + + V ++G L Sbjct: 177 LNAEILKMESAGRDTATLRDYRENLIKDLSQYAGIRVQEVADGTLTVSLANGQPLVAGTT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + N + + + + G + AL + + Q L + Sbjct: 237 AGQLRVEQNL----AGEQELTLVFAKTTFPLVQEGLGGSLGALYDMEYGALRPAQADLHD 292 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA L ++ + PG + S L Sbjct: 293 MAAALAQMVNDTLAGGFDLNGNPGQPLFVHTP--------------------GSTSGMLA 332 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ ++ +G ++ N+ V ++V L + +G + Sbjct: 333 VTALTPEQLAFSSAGQSGTGEVGNNQNLLALLELKSAKVNVAGSDVPLNDAYAGLVGRVG 392 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + VV + VNL EE L+ EQ+Y + K+I ++ + Sbjct: 393 SASRQNKADLAAATVVAEQAQAQRDSVSAVNLDEEAVNLMAYEQAYQANMKVISTSNDLF 452 Query: 473 QTLLEG 478 +L Sbjct: 453 NAVLAM 458 >gi|255099395|ref|ZP_05328372.1| putative flagellar hook-associated protein [Clostridium difficile QCD-63q42] gi|255305252|ref|ZP_05349424.1| putative flagellar hook-associated protein [Clostridium difficile ATCC 43255] Length = 436 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 80/495 (16%), Positives = 170/495 (34%), Gaps = 79/495 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++ N A + N + +I NI N D Y R+ T + Sbjct: 3 GLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + +D A + G+ + E + ++ + + I Sbjct: 63 QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ES SK+++ D V++NA + + S +++ K++ D D I+ EI + Sbjct: 122 DDFFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKEDIDSNIDTEIKQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L L +N +I + S +D LD+RD +L +S + N Sbjct: 182 DMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDFENSDVKNMLAD------ 235 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + ++ + G ++ L ++ + Sbjct: 236 -------------------------GKLELNELKNPDGTWKTGISGTLQGLFEMH-GKID 269 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ L +++ L ++ + + D + I +NP Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VTDFFITSNVDGEDIIKINPAI 319 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +SNP+ L+ + K + K+ D T+ ++ Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + + + N+I S + GV+L EE++ LIK+++SY S K+ Sbjct: 361 KAFAESIGLDSQKVNQDEANQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420 Query: 465 IMFTDKMLQTLLEGV 479 + ++L ++ G+ Sbjct: 421 MSTAVQLLDVVINGI 435 >gi|172058468|ref|YP_001814928.1| flagellar hook-associated protein FlgK [Exiguobacterium sibiricum 255-15] gi|171990989|gb|ACB61911.1| flagellar hook-associated protein FlgK [Exiguobacterium sibiricum 255-15] Length = 509 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 61/503 (12%), Positives = 146/503 (29%), Gaps = 26/503 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + S NI NA + R+ + + Sbjct: 3 STFMGIETGRRALTTNQWALQSTGNNIANAGTAGFSRQRLVMATTEQLSMAIGTGKMGQI 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V M DK ++ ++ E + ++ + Sbjct: 63 GTGVRGEILERVRDVMLDKQYRDEATKTAYYGTKEAAFGRMEDI-INEPSDTGLAKAFDG 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 +SL++ S N + V AE + Q FN ++ + +++ D EI++ + Sbjct: 122 FWESLQTLSTNPQDSGARSVVRQKAETLTQTFNYMSKSLSQVKEDLKSEIDVSTKKVNDL 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ +N I + D+RD + ++++ + + + + T Sbjct: 182 FKKIHNINAEIHTVEPLGVLPNALYDERDRYMDELAQYVDFEKVSVDAEAITQGKLGNAT 241 Query: 227 ---------LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 L + + + + D + + + ++ A Sbjct: 242 KTAEGRIDILVKLPNGNKLRAVDSDVAQAGILSFTTNDKGLYTGFETNSQTISFDAAGGG 301 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + ++ K + + + K + Sbjct: 302 FANGRIAGLLEMYGQIKNGQPTGEFVKMQSNLDEMATTFATAFNAAHAANFKKDKTNGTD 361 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-AGINT 396 S + G K L N+ + + + A T Sbjct: 362 QFFVATSGSISAATIAVGQDIKGSLDNIATSTDGNIGDSAGALKLAQMKTTSLLFATSVT 421 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T+ + +N IG + L S V+ + + + V++ EE++ +I+ + Sbjct: 422 TTTIGSFYQNVIGDMGVATDQVGRLGQSSAVLMDSAEQRRMSVSAVSIDEEMTMMIQYQH 481 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 +YN + + I D+ML ++ G+ Sbjct: 482 AYNAAARNITTVDEMLDKIINGM 504 >gi|294675565|ref|YP_003576180.1| flagellar hook-associated protein FlgK [Rhodobacter capsulatus SB 1003] gi|294474385|gb|ADE83773.1| flagellar hook-associated protein FlgK [Rhodobacter capsulatus SB 1003] Length = 484 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 183/491 (37%), Gaps = 20/491 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + FN A + +S++ + NI NA + Y RR+ + V ++ Sbjct: 1 MSIASAFNFAISGLTASSRKAEVVSSNIANAMTEGYARRELSIASQTLGGTGGGVRILGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L SA F E D S + +S +L + + Sbjct: 61 NRIVNQVVQQDLLLMDSAAANTTAKADFYNRLETQIGDPETAGSLSATMSDFESALLTAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 T + A V N+ + ++Q R ADK I ++ L L +L +N Sbjct: 121 SMPDSTARLTTAVRAASTVADKLNSISEDLQAARLTADKSIAKQVRTLNETLVQLQEMNR 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + +DA +D+R L+ +I+EI+ + + R NN + ++T+ G L + I Sbjct: 181 TITTQISIGNDAAGLMDERQSLVNQIAEIVPLRVVQRENNQIALFTTGGAILLDGSAATI 240 Query: 236 NFEKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 F+ + + + I+G S+ + G + A +RD + P Q+QL Sbjct: 241 GFDGAGVMAPHLTLDSGALSGLTINGYPTSTKDDGPLGGGTLGAAFAVRDELAPEAQSQL 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSN 347 D AR L+ F + S PGLF G + I V+P+ + Sbjct: 301 DAFARDLMTRFEDPSVDTTLSAGDPGLFTDAGSAFDASTEVGLAGRIRMNAIVDPEQGGS 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 LRD + ++N + + + + A Sbjct: 361 SWHLRD------GLMAAAPGAVSDGTILNALSAALTRESAPASGNYGSALRSASGLAAEL 414 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + R + + ++E GV+ E+ L+ +E++Y + K++ Sbjct: 415 LSFASSGRQSAELTQGYATARHEALTEMSLAD-GVDTDYEMQSLLVIEKAYAANAKVVQT 473 Query: 468 TDKMLQTLLEG 478 D MLQ LL+ Sbjct: 474 IDAMLQELLDI 484 >gi|296452609|ref|ZP_06894303.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP08] gi|296880979|ref|ZP_06904925.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP07] gi|296258570|gb|EFH05471.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP08] gi|296428000|gb|EFH13901.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP07] Length = 436 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 81/495 (16%), Positives = 175/495 (35%), Gaps = 79/495 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++ N A + N+ + +I NI N D + Y R+ T + Sbjct: 3 GLFSILNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + +D A + G+ + E + ++ + + I Sbjct: 63 QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ES SK+++ D V++NA + + S +++ K++ D D I+ EI + Sbjct: 122 DDFFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L L +N +I + S +D LD+RD +L +S + N Sbjct: 182 EMLKSLEDLNKSIDIISGSGSMPNDLLDERDRILDNLSFKLDFENSDVKNMLAD------ 235 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + ++ + + G ++ L ++ + Sbjct: 236 -------------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKID 269 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ L +++ L ++ + ++D + I VNP Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VRDFFVTSNVDGEDIIKVNPAI 319 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +SNP+ L+ + K + K+ D T+ ++ Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + + + + N+I S + GV+L EE++ LIK+++SY S K+ Sbjct: 361 KAFAELVGLDSKKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420 Query: 465 IMFTDKMLQTLLEGV 479 + ++L ++ G+ Sbjct: 421 MSTAVQLLDVVINGI 435 >gi|260429026|ref|ZP_05783003.1| flagellar hook-associated protein FlgK [Citreicella sp. SE45] gi|260419649|gb|EEX12902.1| flagellar hook-associated protein FlgK [Citreicella sp. SE45] Length = 485 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 107/490 (21%), Positives = 189/490 (38%), Gaps = 17/490 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---SPENVTVVTQRS 57 MSL + A + S+ + + NI NA ++Y RR T+ V + Sbjct: 1 MSLSGALSNALSGLTANSRAASLVASNIANATTESYGRRTLETSSRTVGVGGVQIDGVNR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + G +Q+F + E + S + + S +++ S S + Sbjct: 61 RIDTAVLSDRRLSDAQTGFAENMQTFASKIESLLGPSGEAGSLSSFYSAFENAILSASSD 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 S +TV A++ V N + +Q RA AD+ I ++ +L L + +N+AI Sbjct: 121 PSSTQRLQTVALAAQDFVGKLNDVSTTLQLSRATADRTIAAQVDSLNTALGRVKDLNEAI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PR 233 DA +D+R ++ ++SEI+ + T+ R+N + VY + G L + P Sbjct: 181 AESMYRNGDASSLMDERQRVIDQVSEIVPLRTVQRDNGMIAVYAASGNPLLDPTIHSEPA 240 Query: 234 DINFEKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +I F N T + + I G V+S + G + A LQIRD+V Q+ Sbjct: 241 EIGFTAQNLVTADMTLGNGLLSGLTISGKAVNSTNEGPLGGGTLGAQLQIRDTVAVELQS 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD +AR LI F P PGLF G+ ++ Sbjct: 301 VLDGIARDLIERFEPGGPDTTLVAGDPGLFTDAGLAFDPLNEVGLAGRISLNALVDPTDS 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 R + +V G L+ Y D+ + + + E+ + + Sbjct: 361 GTWRLRDGLGAATQGDV----GDARLLQAYSDALESLNVPGSTSLGTGAFSFGEHVGDFV 416 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + R + S + E + GV+ EL ++++EQ Y + ++I Sbjct: 417 SAVSTARVRADGQQSFSNAQNTALKELELSA-GVDTDAELQEMLRIEQHYAANARVITTV 475 Query: 469 DKMLQTLLEG 478 D+++QTLL Sbjct: 476 DELMQTLLSI 485 >gi|330447910|ref|ZP_08311558.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492101|dbj|GAA06055.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 70/483 (14%), Positives = 160/483 (33%), Gaps = 37/483 (7%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56 + N + N N+ N + Y R+ M + + V V + R Sbjct: 2 NMINIGLSGLNANKTALDVTAHNVANVNTVGYSRQQAMMSALAGRELFSAGSGVEVDSIR 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K + A +S + + E + + +N + + L +L + Sbjct: 62 RVSDQFIVKQMWAATSQQAASNANLANMTMLESLLGGEGFN--ISAGLDSLFSALNDATL 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + +I+ A+ + + FNT + + + I + +S + +N Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTLSESLHGQGNRISDKATASIEHANSLMSNIADINHR 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A+ + +D+RDVL++++SE++ IS+ + N + V + G L Sbjct: 180 VVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQPNGSLQVTLASGQPLILGSDAAQL 239 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ I G + + G++ A + + Q L+EMA Sbjct: 240 KATPIVNEPFIQNIEIDFAGQTFAV---TGEFGGQLGAYDDYLKNTLKPTQQVLNEMAEN 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L F++ + PG + + L Sbjct: 297 LASEFNQVLASGFDLNGDPGQALFSFAPNSPAAS--------------------LDITAI 336 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + G D + + K + + NV+L + + +G Sbjct: 337 TPAELALSSDGTPGNSDTLQALINLSTKPMAINGL----GNVSLNDAFASMVGKTAIETR 392 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ + + + + N VN EE + L+ +Y + K+I +++ ++L Sbjct: 393 QAAVDQKAAETLSSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVISTANELFDSVL 452 Query: 477 EGV 479 + Sbjct: 453 RLL 455 >gi|126738558|ref|ZP_01754263.1| flagellar hook-associated protein K [Roseobacter sp. SK209-2-6] gi|126720357|gb|EBA17063.1| flagellar hook-associated protein K [Roseobacter sp. SK209-2-6] Length = 484 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 79/483 (16%), Positives = 174/483 (36%), Gaps = 8/483 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58 M++ + N A + ++ + N+ NA Y + + + V Sbjct: 1 MTITSAINSAMSGLTANARSSQVVSENLANALTPGYSAQRLNLSTNSYTGGTKVDGVERL 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + +F + + + S + +S +L Sbjct: 61 IDPALQASARTAEAEHSAAETYANFYSRMSSLVGVVDDDTSISAQVSNFDSALIEAVSRP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + A+ VV+ +A + +R +A+ I ++ L L E+ +N I Sbjct: 121 DSTERLHQLSVQADLVVKTITHAADGLNALRVEAETSINSQVRTLNNSLKEIEKLNARIV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 A+ DQRD L+ ++++II ++ + R+ + +Y+ G L + +I F+ Sbjct: 181 VSEAAGTSTTAMQDQRDKLIDEVNKIIPVNVLSRSQGRVALYSEGGVALIDGRASEITFD 240 Query: 239 KMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + N + ++G ++ ++ + G + A IRDS QN LD + Sbjct: 241 ALQTIEPHMTLDNGLLNGLEVNGKLIDTSADGPLRGGTLAAQFDIRDSAAVEAQNDLDAL 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A+ L+ F + A G+F G + + + + + S + Sbjct: 301 AQDLVERFQDPALDATLGATDAGIFTDAGGFFDNTVPANTVGLSARLELNSSVSLSGAAE 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + G L+ Y D + +L + + + + Sbjct: 361 TWRFRDGINAASQGDPGNASLLTAYSDRLAETRSVSTTKLGAITGSLNTLSASVMSRFAR 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + ++ + F+ +S++ GV+ EL L+ +E++Y + K++ D+M+Q Sbjct: 421 DSDTANSTMSFAAASFSEMSKAKLAL-GVDSDAELQNLMIIERAYAANAKMLEAVDEMMQ 479 Query: 474 TLL 476 TLL Sbjct: 480 TLL 482 >gi|268317787|ref|YP_003291506.1| flagellar hook-associated protein FlgK [Rhodothermus marinus DSM 4252] gi|262335321|gb|ACY49118.1| flagellar hook-associated protein FlgK [Rhodothermus marinus DSM 4252] Length = 464 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 71/495 (14%), Positives = 166/495 (33%), Gaps = 48/495 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MSL +F+ + ++ +N+ NA+ + Y RR Sbjct: 1 MSLNQLFSLTRRSFQTIQAAMNTVGQNVANANTEGYARRRVTLQAVNIRDTGIYTALPPR 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + V+V T ++ D +++G + E + A D + Sbjct: 61 SATGLGVSVATYERLRDHLLDVAAWDARASLGAADEETRIYQVLESLLAAD-DDTGLAAL 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 ++ + + N ++ + + + A+ ++ F+ AR++ + + + + Sbjct: 120 LNDFWNRWSDLADNPTDTGVREALRGQAQTLIDTFHRLARDLDTLTIQTTETLRDAVDQA 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L EL +N I+ + D+RD L+ +++E++ + + + Sbjct: 180 NSLLEELASLNATIQAARQKGNPDLVAEDRRDQLVHELAELLPVQVHALEDGSYQLTVGG 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + + + N G+I A L++ + Sbjct: 240 MALVQGDQVMPLTLDLSGGTPSLTFGNTGIAFRAPEG-------QDGRIGAQLRMLTQTI 292 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P + +LD +A L+ + + + + G D TI ++ Sbjct: 293 PDVRQRLDTLAATLVNEVNSRHASGYGLDGLTGRAFFDPAGTTA--------STIALSAD 344 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + +G P + + D + T Y Sbjct: 345 VLADSRAIA---------------ASGDPTAPGDNSVALQIAGLRDALLFNGGTETAETY 389 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 A N G + D+ +S+ +H+ +GV+L EEL+ +I+ +Q+Y + + Sbjct: 390 AINLAGIIGAAAKDATGRLERSRATIDHLDALQQGVMGVSLDEELTNMIRFQQAYAATAR 449 Query: 464 LIMFTDKMLQTLLEG 478 ++ M+ TLL Sbjct: 450 VLDTARSMMDTLLNL 464 >gi|329928727|ref|ZP_08282576.1| flagellar hook-associated protein FlgK [Paenibacillus sp. HGF5] gi|328937508|gb|EGG33926.1| flagellar hook-associated protein FlgK [Paenibacillus sp. HGF5] Length = 523 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 62/517 (11%), Positives = 160/517 (30%), Gaps = 42/517 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + + N+ NA+ Y R+ T Sbjct: 3 STFHLLEIGKRGLIAQQAALNTAGHNVTNANTPGYSRQTTRLVAANPIAFPGLQRSQAAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D ++ + + Q + E + ++ ++S + I Sbjct: 63 QLGMGVEAESIQRVRDFLLDIEYRNQNTNLSTWSVQQETLSNIEGIF-NEPSDSSLSASI 121 Query: 105 SKLRDSLESYSKNLSED--ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 ++ + ++ SKN S+ V A + + FN ++ + + I+ +++ Sbjct: 122 AEFWTAWQTLSKNPSDTDLSARMAVQQKAIALTETFNHIYSQLDTLSNNLTSRIDTKVAE 181 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 ++ ++ + +IK +A+D D+RD+L+ ++S + ++ + V Sbjct: 182 ANNYIEQVAELTQSIKRIEGLGDNANDLRDKRDLLVDQLSLLGNVNVTETGDVYQ-VTFG 240 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + I + T + + V V A ++ ++ Sbjct: 241 NQVVVDDMTFTPITNAIAGALTGGEIAGYVTSRDVHVQGYITQLNIMANTLATGKVEVTL 300 Query: 283 VPIFQ-----------------NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK- 324 +L E + + + + + Sbjct: 301 PAGTILPPGVNIPNAVMDANNPRKLAEDTKHTVDGLNGLHKLGYTLNEPATTGGDFFVSA 360 Query: 325 ---DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + ++ +K G LI + Sbjct: 361 NGGPITAGNMRLSQTIQSDLKNIGASLRTEMKTNPDGTTSEVVLKGNGGMALLIAGLSER 420 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + Y ++ I L + S++ + ++ H + Sbjct: 421 TFSFNPNNSNGAVTDITNFEGYLQSVISKLGTDSSNAIKMVENGTLLVEHADTLRLSISS 480 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EE+S LI+ + +Y+ S++++ D+ML L+ G Sbjct: 481 VSLDEEMSDLIRFQHAYSASSRVVTTIDEMLDKLING 517 >gi|327441344|dbj|BAK17709.1| flagellar hook-associated protein [Solibacillus silvestris StLB046] Length = 562 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 68/556 (12%), Positives = 167/556 (30%), Gaps = 79/556 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S ++ + NI NA+ Y R+ + Sbjct: 3 STFMGLEASKRGLYTQQSALYTTGHNISNANTLGYSRQRVNMETTPGFPGAGLNSGKTAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D+ ++ +G + + E + + + Sbjct: 63 HIGTGVQASSVQRIRDEFVDRQYRQETNKLGYWQSTTQSISQMEDVMS-EPTEFGINQAF 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ++ S+E N + + +I + + ++FN ++++I+ + EI + S + Sbjct: 122 TEFWKSMEDVVTNPKDTAARQVMISKGQSLAESFNYMDTQLKQIQGNIGNEINVVTSEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ +N ++ + + +D D RDVLL K++++I +S + + ++G Sbjct: 182 SLLKQIADINKQVQAIEPNGYMPNDLYDARDVLLDKLNDLIPVSISFEKSGGNALAIAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK------------I 272 + P + + + +E + + G V + G + Sbjct: 242 SMTVTFKPVNGDPIILVHSKNYAELSTMDSKGKPVDGDVDEDDTAGYASFSGIVVKGSIL 301 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 K D+ ++ +S+ I + Sbjct: 302 KEENPNYDATTNPTVSKYLYKIDANPTGKEVAYNQLEDSKGKLAALIDAYGYVEKDSTGT 361 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--LINHYCDSFNKNFIFDP 390 I + P L+ ++ +F+ + Y + + N + Sbjct: 362 VIVDGNGKPIVKGIYPEMLQKLDKLASEFINAFNGMHAYSEDPVTNAVINQAYNLKGDKA 421 Query: 391 VAGINTNV-----------------------------------------------TLLEY 403 + T + Sbjct: 422 GNFFDGTTAKNMKVLDGMKPEDIAASNVLGEEGNNKNILALSALQSAVQGNLQGGTFQSF 481 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 ++ IG L + L S + I + ++ V+L EE++ +I +Q+YN + + Sbjct: 482 YKSLIGELGVKGQQALTLEYNSTTLLLQIENNRASHNSVSLDEEMTNMITFQQAYNANAR 541 Query: 464 LIMFTDKMLQTLLEGV 479 +I D+ L ++ G+ Sbjct: 542 MITVIDETLDKIINGM 557 >gi|255263716|ref|ZP_05343058.1| flagellar hook-associated protein FlgK [Thalassiobium sp. R2A62] gi|255106051|gb|EET48725.1| flagellar hook-associated protein FlgK [Thalassiobium sp. R2A62] Length = 479 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 88/488 (18%), Positives = 174/488 (35%), Gaps = 21/488 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + + A + AS+ + N+ N+ Y RR + V + Sbjct: 1 MSISSSLSNALSGLTAASRAAEIVSSNLANSLTDGYARRRLDLSSQLTGGVGGGVQIDGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +G +F E + + T +++L SL + S Sbjct: 61 ARLVDRGVLADRRISDANLGFADTSVAFFRNLERVMGVPGDPGTLTDRLTQLETSLIAAS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 S + V + + N +Q R AD I + L L+ + ++D Sbjct: 121 IQPSSEQRLDAVGQSFLGITAELNRLTDSIQTDRERADASIAANVDELNASLALIDKLSD 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I S D LDQR + + +S+II + + R+NN + + ++ G TL+++ P Sbjct: 181 DITTIRISGADISALLDQRQLAIDAVSKIIPVQEVSRDNNQIALVSAGGGTLYDSQPAIF 240 Query: 236 NFEKMNSYTVT----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +FEK ++ T + + +G V+ + + G ++ +RD Q +LD Sbjct: 241 SFEKTSTITGELSVINGLGHLKFNGTSVNFLENNPFDGGILEGHFDVRDEFAVQAQTELD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSF 350 E+A LI F D ++ + + + + S Sbjct: 301 EIAASLIDRFQGDDVDPTQTDVLGIPALGIFTDGGQAFSSGNEAGVAGRISINELVDVSQ 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + G P I ++ + + +A A + Sbjct: 361 DGKSQLFRDGLYDEGGSELGDPTQIQNWLGALSTPLSDSALAE----------ATDVFSK 410 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + R S + + ++ + GV+ +E+ L+ +EQ+Y+ + K+I D+ Sbjct: 411 IGSRRLISERNFSFENARYETLKQAELSD-GVDTDQEMQNLLLIEQAYSANAKVIQTVDE 469 Query: 471 MLQTLLEG 478 M+QTLL Sbjct: 470 MMQTLLRL 477 >gi|159045918|ref|YP_001534712.1| flagellar hook-associated protein FlgK [Dinoroseobacter shibae DFL 12] gi|157913678|gb|ABV95111.1| flagellar hook-associated protein FlgK [Dinoroseobacter shibae DFL 12] Length = 485 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 102/487 (20%), Positives = 181/487 (37%), Gaps = 15/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MS+ + A + AS+ + + NI NA + Y R TT V VV+ Sbjct: 1 MSVTSTLGNALSGLTAASKAASVVSSNIANATTEGYGVRQVQTTSVSLNGQGSGVQVVSV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 A +A Q L SF E S + S+ +L Sbjct: 61 SRNVNEGVLADRRAADAAYAQAATLASFYGSVEGAIGLPGDEGSLSSEFSQFEAALVEAG 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 D V+ AE + N + ++Q R +A+KEI ++ NL L+++ +N Sbjct: 121 SRPDSDARLANVVRAAESLAGTLNDLSADIQSERLEAEKEIARQVDNLNTSLAQIQDLNG 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I+ + A+ +D +DQR VL+ +I+ I+ +S + R+ + + T G L + +I Sbjct: 181 DIRLQIAAGNDPLGLMDQRQVLIDQIATIVPVSVVDRDFGQVALITESGGVLLDGTAAEI 240 Query: 236 NF------EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +F + V S++ + + G + AL +IRD + Q Sbjct: 241 SFRDVGLITPDMTVASGGLYQVEINGSPVDSTSPNNPLKGGSLDALFEIRDELAVSAQGD 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +D +AR LI F S PGLF G + + R +P+ Sbjct: 301 VDAVARDLIERFQNSAIDPTLSAGEPGLFTDAGALVDPANE---VGLAGRIELNARVDPA 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + V G +I D+ ++ + + + T A + + Sbjct: 358 KGGEVWRVRTGLGATSPGDPGAGGIILALSDALSEPKVVASGSFSSIPRTAAALASDLLS 417 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + R S + + + + GV+ EL L+ +E +Y + ++I D Sbjct: 418 TIGAARQASENEVSYTAAKWETLRSLELEG-GVDTDAELQKLLMIETAYAANARVIQTVD 476 Query: 470 KMLQTLL 476 +ML LL Sbjct: 477 EMLDLLL 483 >gi|319790356|ref|YP_004151989.1| flagellar hook-associated protein FlgK [Thermovibrio ammonificans HB-1] gi|317114858|gb|ADU97348.1| flagellar hook-associated protein FlgK [Thermovibrio ammonificans HB-1] Length = 449 Score = 206 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 171/480 (35%), Gaps = 35/480 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 M+L + A + + RN+ N + Y R + + VTV T R Sbjct: 1 MALFGALSLASQALLSQQIAVNTTNRNLSNVNTDGYSREEPVFADIPGGGVTVATLRRVF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ K + + + + E + +D + + I+ + + N + Sbjct: 61 SSVLFKRFISENQNNAYLKAKSEVLSQVESLF-NDQMGSGLSQAINDFFSVMNDVAVNPA 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + ++ A+ +V S +Q+I++ K++ +SNL + L +L +N I Sbjct: 120 DLAARQELLSKAQVLVGRIRDSYSALQEIKSTYSKQVAESVSNLNQLLEKLADINRNIPL 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S + +LD+RD +++IS II ++ + +YT+ G L + ++ Sbjct: 180 FADSPDRLNQYLDERDRTIKEISSIIDAKVQFNSDGTVNLYTAKGFAL-------VLGDR 232 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 TV + + + + + S + G + L+ + VV +L+ + + Sbjct: 233 TFKVTVKNTDSGVKVLADGR--DITSDLSGGSVGGLVSALN-VVESAMERLNTLTSTIAN 289 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + N G+ + ++ L Sbjct: 290 EVNAQHEQGYNLYGETGIDLFASDNGQP----------------IDASNIVLAFNDPKKF 333 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDS 418 + L + +K + ++ EY W+ + + Sbjct: 334 AAASDPNYLDSDNGNVKALMALADKTYTQL------NGLSFAEYYGTQITSWIGQEVESN 387 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +L S + I + GVN EEL L + +++Y + +++ TD++LQT+L Sbjct: 388 DNLLKNSDFQLDAIKQKVEELSGVNTDEELVNLTRYQRAYQAAARVVTVTDELLQTILNM 447 >gi|13472593|ref|NP_104160.1| flagellar hook-associated protein FlgK [Mesorhizobium loti MAFF303099] gi|14023339|dbj|BAB49946.1| flagellar hook-associated protein 1; FlgK [Mesorhizobium loti MAFF303099] Length = 484 Score = 206 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 161/483 (33%), Positives = 249/483 (51%), Gaps = 4/483 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + AQ+ + ++Q + + RN+ +A N +Y RR + T + V + Sbjct: 1 MSLSSALSIAQSALMSTARQTSVVTRNVSDASNPDYARRIAVVTSTAPGARSVDIQRVAN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ + SA Q L S ++ +SP+ I+ L+ +L+ Y+ + S Sbjct: 61 DLLFRQNLGALSAYSGQNALYSGMDQLDVSVNGVDNASSPSTAIANLQQALQLYATSPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +VID A++VV++ N ++ +Q R D +I+ + +L L + N A+ Sbjct: 121 QNLGSSVIDAAKQVVRSLNEGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDANQAVISG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T S D D LDQRD LL+KI++ I IST R +NDMV+ T DGTTLFET+PR ++F Sbjct: 181 TRSGTDVSDALDQRDALLKKIADYIPISTFTRGDNDMVITTGDGTTLFETIPRTVSFTPA 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 Y + N I+ID V VS+ G+ GK+ LLQ+RD V Q+QLDE AR LI Sbjct: 241 AGYAAGAPGNTIYIDNVPVSAGSGGNTTASGKLAGLLQLRDGVASTMQSQLDETARGLIT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 +F+E P N+ + A + L N L IS ++P NP+ LRDGG+ Sbjct: 301 AFAETAPAMPNAAGLFTWSGAPAVPAAGTLVNGLAGTISINAAMDPSAGGNPTLLRDGGA 360 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ N Y L+ Y D +K FDP AGI+ ++ +YA NSIGWL+ R Sbjct: 361 NGAAYVANTTGGPSYSSLLIAYGDRLDKPMTFDPAAGISATSSVSDYAANSIGWLQSMRQ 420 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + SE+ SN GVN+ +E+S ++ +E +Y S +++ D ML LL Sbjct: 421 QASTAADAKEALAQRSSEALSNATGVNVDQEMSLMLDLEHTYQASARMMKTVDDMLTALL 480 Query: 477 EGV 479 V Sbjct: 481 NAV 483 >gi|89067518|ref|ZP_01155031.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516] gi|89047087|gb|EAR53141.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516] Length = 478 Score = 206 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 88/485 (18%), Positives = 171/485 (35%), Gaps = 14/485 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-TMTTISPENVTVVTQRSEN 59 MS+ A + AS++ + NI NA + Y RR +++ V Sbjct: 1 MSIATSIGSALSGLEVASRRAEIVSGNIANALTEGYGRRSLAVSSTMLGGVRADGVIRHA 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + + + + ++ + +L S + + S Sbjct: 61 DRGIAADRRSAEADMEANAAQSDILDRLQRLFGEPGEPGALSSRLTAVEQALVSAAADPS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 DI V D + N + +Q++R +AD+ I ++++L R L + +N I Sbjct: 121 SDIRLGHVADRLTALTGALNHAGDSLQEMRTEADRSIATQVASLNRQLERVETLNGEITS 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A D LD+R + IS ++ + IVR N+ + + T G TL + R+I F Sbjct: 181 LRARGVDVSPLLDERQKAVDGISALVPVREIVRENDAIALMTLSGATLLDGKAREIGFSP 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293 +N T + G+ ++ + + G++ + IRD+++P LD Sbjct: 241 VNLVTADMTHASGALSGLTIAGDPVTGSTAYGKLGGGRLGSTFDIRDTILPDVSTGLDAF 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 AR L F++ + PGL G S N L Sbjct: 301 ARDLADRFADPATDPTLAAGAPGLLTDAGAALDPLDTPGLASRIALNPTVDPGNGGSLAR 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G I + D+ + D + + + + + + Sbjct: 361 LRD---GLGETSSAPVGSSTQIERWLDALQDSRRTD---LGGSAASASGHMASLLADVGS 414 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R + + + GV+ EL L+ +EQ+Y + K++ + +L Sbjct: 415 RRYAIEQDLAFETARWEVLKSAELAN-GVDTDRELQELLLIEQAYAANAKVLQTVNSVLT 473 Query: 474 TLLEG 478 LLE Sbjct: 474 RLLEI 478 >gi|325289234|ref|YP_004265415.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] gi|324964635|gb|ADY55414.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] Length = 507 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 76/505 (15%), Positives = 170/505 (33%), Gaps = 36/505 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 S A A + + + Q + NI NAD YVR+ + T Sbjct: 3 SSFAGIATATSGLSVSQSQLNTTGHNISNADTAGYVRQQVVQTDASYLKSGQYQVGTGTR 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + T R D++ S + ++ S E D + + + + Sbjct: 63 IETIRQIRSVFLDRMYRNEQSTLSYWQIRSSTVESIEAAMNDLADDGGVQTALDEFFAAW 122 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E K+ +++ A +V+ FN ++ +I+ + D++I + ++ ++ Sbjct: 123 EEVGKDPESSSARASLLGYAGSLVELFNQLETQLDQIQTNLDEQIVSMVEDINTIAGQVA 182 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + A+D+ D+ + LL +S+ + I+ +N V + + T Sbjct: 183 ALNKIIARCEVNGDRANDYRDEVNSLLDTLSQYVKINVTTDSNGMYNVSVGGVSLVNGTS 242 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF--QNQ 289 +++ + +N F +S + G + +L++ R V Sbjct: 243 VSELSC-------AANLANGSFHTVFWANSGLEPDLKSGMLLSLMEARGDVDGSAGSAGN 295 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--N 347 + + D + IA+ L+ + + ++ Sbjct: 296 GSPLESGAEEEDVDADAAVYDFTGESENLIAELRSGLNIMVSLLTRKINALHSGGEGLDG 355 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------- 394 + + + + + + N+ P L + + + A Sbjct: 356 STGIDFFVKIDEDLPFEIGNIQVNPQLEETDLIAASSIGGGNDGAVAAEIAAFAETEYFH 415 Query: 395 --NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +T+ Y GWL ++ + + S + V++ EEL+ L+ Sbjct: 416 CDGLAMTISAYYSELAGWLGTEGEEAESAAANQETLVEQAESSRESLSAVSMDEELANLL 475 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLE 477 K + +YN S +++ D ML L+E Sbjct: 476 KYQHAYNASARVMSMIDGMLGRLIE 500 >gi|157373201|ref|YP_001471801.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] gi|157315575|gb|ABV34673.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] Length = 457 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 160/486 (32%), Gaps = 36/486 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53 MS+ N + N + + N+ NA Y R+ M + V V Sbjct: 1 MSM---LNIGMSGLNASMAALNTTSNNVANAMVPGYSRQQVMMSSVGSGTYGGGAGVMVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +S +G ++ S+ E + N+ + + L SL S Sbjct: 58 GVRRISDQYEVAQLWNTTSDVGFSKVQASYYGQVEQIFG--SDGNNISQGLDLLFASLNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + +E + V++ A + FN+ + V + + ++ + + L + Sbjct: 116 AMEQPNEIAYRQGVLNEARALTHRFNSISEGVNAQLSQIEGQLGASVKEVNAQLQTIASF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ + + LD RD + ++ I+ I+ + +N + + + G L Sbjct: 176 NAEIQASGNNGNVPSSLLDARDAAVDDLAAIVDINVVEDSNGMLNISLAQGQPLLAGTTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + I ++ + G + ALL RD+ + +DE+ Sbjct: 236 STLSVSPDPGNPGMSKISIQFGQSSFPVDESA---GGSLGALLDYRDNSLMDSIAFIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + F+ + ++ Sbjct: 293 AMTIADEFNAVLAGGTDLNGNTPTQDLFTYDPNSPAGSLKLTSGFTAEMLAFGQ------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + NK+F F+ I + T+ + + IG L Sbjct: 347 ------------DGTPGDNSNLKELVELANKSFTFNS---IGADTTMGDAFASKIGELGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + +++T GVN+ EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAQVNADTSVKLQMEAQSQWASTSGVNMDEEAVNLIIYQQSYQANAKVISTADQLFQ 451 Query: 474 TLLEGV 479 T+L + Sbjct: 452 TILNSI 457 >gi|90577350|ref|ZP_01233161.1| putative flagellar hook-associated protein [Vibrio angustum S14] gi|90440436|gb|EAS65616.1| putative flagellar hook-associated protein [Vibrio angustum S14] Length = 455 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 69/483 (14%), Positives = 155/483 (32%), Gaps = 37/483 (7%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56 + N N NI N + + R+ M + V + + R Sbjct: 2 NMINIGLTGLNANKTALDVTAHNIANVNTPGFSRQQAMMNALAGNDILSAGSGVEIASIR 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K A +S + E + + +N + + L +L + Sbjct: 62 RISDQFIVKQTWAATSQQAASNANLDNMTMLESLLGGEGFN--ISAGLDSLYSALNDATL 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + +I+ A+ + + FNT + + + I + ++ + +N Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTLSESLHGQGKRIGDKATASIEHANSLMNNIADINHR 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A+ + +D+RDVL++++SE++ IS+ + + + V + G L Sbjct: 180 VVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQPDGSLQVTLASGQPLILGSDAAQL 239 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ I G + + G++ A + Q LDEMA+ Sbjct: 240 KSTPIVNEPFIKNIDIDFSGQTFAV---TGELGGQLGAFDNYLKDTLKPTQQVLDEMAQN 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L F++ + G + + L Sbjct: 297 LATEFNQVLATGFDLNGNRGQALFSFDPNSPAAS--------------------LDITAI 336 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + G D + D K + +VTL + + +G Sbjct: 337 TPAELALSSDRTPGNSDTLQALIDLSTKPMAITGL----GSVTLNDAFASMVGKTAIETR 392 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ +F+ + + N VN EE + L+ +Y + K+I +++ ++L Sbjct: 393 QAAVDQKAAETLFSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVISTANELFDSVL 452 Query: 477 EGV 479 + Sbjct: 453 RLL 455 >gi|170748124|ref|YP_001754384.1| flagellar hook-associated protein FlgK [Methylobacterium radiotolerans JCM 2831] gi|170654646|gb|ACB23701.1| flagellar hook-associated protein FlgK [Methylobacterium radiotolerans JCM 2831] Length = 485 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 134/486 (27%), Positives = 229/486 (47%), Gaps = 7/486 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ + Q + RN+ A + +Y R+ + V VV R+ + Sbjct: 1 MGLSVALNAARGSLQANAIQTDVVSRNVAGAYDPSYSRKIASVITTDGPVRVVINRASST 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +FD+++ + S G Q +L +L++ + D S + L +L + ++ Sbjct: 61 ALFDRMMGSTSELAGYQAVLDGLTSLEDTV-GDTDAGRSIAAKVGALNIALGDAAGEPND 119 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L K + A ++ + N ++ ++Q R +AD EI ++ + L + N A+ Sbjct: 120 INLAKAAVAAARDLARALNQASSKIQATRLNADHEIRTSVTTINDLLRKFDAANSAVVLG 179 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D LD RD +L ++S+ IGISTIVR NNDM +Y +G+ LFE PR + FE Sbjct: 180 TVRGEDISDALDNRDKILAQLSQEIGISTIVRENNDMAIYADNGSPLFERGPRTVTFEST 239 Query: 241 NSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ + +F+DGV V+ + G+I + +RD + +Q QLD +A LI Sbjct: 240 AAFVPGTAGKAVFVDGVQVTGHGSVMPLQTGRIVGQMTVRDDLTVTYQKQLDAIAGGLIA 299 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI----CVNPQYRSNPSFLRDGG 355 + +E D + + GL G L G++ TI +P+ NP LRDGG Sbjct: 300 ALAETDSTSLGGTPLAGLLTYPGGPALPAAGTVGLAGTIRVNPAADPEQGGNPFTLRDGG 359 Query: 356 -SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + ++ +N N A + + + + F P + + TL A S WLE Sbjct: 360 MNAGPQYAYNTTNAAAFAEHLRALRAALGAERTFLPDSELPHAATLQVAAETSASWLEAT 419 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 R + + + + S + SN GVN +E++ ++++E+SY S KLI + MLQ+ Sbjct: 420 RQGASKQVDRESALLDSASTALSNATGVNRDDEVATMLQLEKSYAASAKLIATVNAMLQS 479 Query: 475 LLEGVK 480 LL+ V+ Sbjct: 480 LLDAVR 485 >gi|145297460|ref|YP_001140301.1| lateral flagellar hook-associated protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850232|gb|ABO88553.1| lateral flagellar hook-associated protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 439 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 59/486 (12%), Positives = 149/486 (30%), Gaps = 56/486 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52 MS+ N + N A +NI N + Y R++ M + V V Sbjct: 1 MSM---LNIGLSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEV 57 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + S+ G + E + + N + SL Sbjct: 58 TGVRRITDDYLVSQHWRSRSSTGASYSFHQYINTTEQLLGSESMN--IAKGLDSFFASLS 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ +A + F + D ++ +S + +L ++ Sbjct: 116 AALDSPETPAQRSQIVSSAGALANRFGQLNESMLTQEKQIDDQLNSTVSQVNSYLKQVAE 175 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + + D R+ +++++S + + +++ + G L Sbjct: 176 LNTQISEQASKGVNTSVLEDSREQIVRELSTFMEVRVNRQSDGSFSLSLPQGQPLVLAGS 235 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +S +++ S + G + +++ R +V+ +++L++ Sbjct: 236 SSTLSLAGDSLSLS----------FGPQSFDVPKLHGGSLAGVIEYRTTVLRPLRDELNQ 285 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A+ L F+ K + PG + + + Sbjct: 286 IAKKLADDFNAKQSGGVDLHGNPGKSLFTYDPLNPSGTL------------------KIA 327 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 DG + +G + + + + +G + Sbjct: 328 DGFTGDDLAFAKAGGGSGDNRNLQELLTIKDSQY---------------DAYSALLGRMA 372 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + ++ S+ GVN EE ++ ++Y + K+I +D++ Sbjct: 373 VQSGQAKATMEADANMEKQLATKLSSVSGVNTDEEGVKIMAYTKAYQANAKVISTSDQLF 432 Query: 473 QTLLEG 478 ++L Sbjct: 433 NSILNM 438 >gi|110632639|ref|YP_672847.1| flagellar hook-associated protein FlgK [Mesorhizobium sp. BNC1] gi|110283623|gb|ABG61682.1| flagellar hook-associated protein FlgK [Chelativorans sp. BNC1] Length = 487 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 245/487 (50%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+ N S+Q + + RNI A N +Y RR + + R Sbjct: 1 MSLTSALNIAQSALFNTSRQTSIVSRNISEASNPDYARRAASLVSTNSGAQIGDIRRATD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + A S+ Q L ++ +SP +SKLR++L++Y+ S Sbjct: 61 EVLFRQNLAAQSSWNGQSFLSRGLDRLQINVNGVDNASSPATALSKLREALQTYAATPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + ++ A ++V + N+ +Q R D D+EI + +L R L+E VN I Sbjct: 121 RTLAENAVEAARQMVLSLNSGTAAIQSFRTDIDQEISASVDDLNRLLAEFETVNTQIVSG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + D D LD+RD LL++IS + +STI R NNDMV+ T+ G TLFETVPR ++F Sbjct: 181 TRTGRDVSDMLDRRDALLKQISAYLPVSTITRANNDMVLTTTGGVTLFETVPRPVSFTAN 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 N+Y + N +++DGV +S G G + A LQ+RD + Q QLDE+AR L+ Sbjct: 241 NAYAAGTLGNAVYVDGVPLSPGAGGGNTTASGSLAANLQLRDEIAVQMQRQLDEIARGLV 300 Query: 299 GSFSEKDPIAGNSE-----NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 F+E DP S+ PG L + L IS ++ + +P LRD Sbjct: 301 SVFAESDPSGTLSDAAGLFTWPGGPALPADGILVDGLAGRISVNPAMDSRAGGDPELLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 GG+ +L N A Y L+N + + +FDP G+ ++ +L ++ +IGWLE Sbjct: 361 GGANGTAYLHNTTGAASYSGLLNSFVERLETPQLFDPATGLGSSQSLFSFSVETIGWLEG 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R S + + +H + + +NT GVN+ EE++ L+++E SY S +L+ D+ML Sbjct: 421 LRQQSASGMAAKEALASHTATALANTTGVNIDEEMALLLELEHSYQASARLMSVIDEMLA 480 Query: 474 TLLEGVK 480 L+E + Sbjct: 481 NLMEVAR 487 >gi|27381968|ref|NP_773497.1| flagellar hook-associated protein FlgK [Bradyrhizobium japonicum USDA 110] gi|27355138|dbj|BAC52122.1| flgK [Bradyrhizobium japonicum USDA 110] Length = 491 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 243/489 (49%), Gaps = 10/489 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSE- 58 MSL A + A+ + Q ++I RNI A Y R+ + V V + + Sbjct: 1 MSLTAALDSARASLMASGIQSSTISRNIAGASAAGYSRKIAVLDNLPGAGVYVASIQRAA 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + +++ VL A SS+ Q + + + D + SPT ++ L+ +L+ Y+ Sbjct: 61 SSGLYNNVLTATSSSAKQGAIYDGLQKIASATVDDTELDQSPTAQLNALKKALQQYANAP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 L + I +A+++ N + VQ +R AD ++ ++N+ + L++ VN+A+ Sbjct: 121 DNTTLAQAAITSAKDMATALNQATNTVQSVREGADADMATSVANINQLLTQFDKVNNAVV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + D D+LDQRD ++ K+S+ +G+S +R N D +YT G LF+ R ++F Sbjct: 181 RGTIAGDDVTDYLDQRDSIVSKLSQEVGVSMSIRANGDAALYTDSGVVLFDKTARTVSFT 240 Query: 239 KMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N YT + N ++IDGV V+ N + GK+ L Q+RD +Q+QLDE+AR L Sbjct: 241 ATNIYTAGTTGNAVYIDGVPVTGANSVMPLKSGKLAGLAQLRDQDSVTYQSQLDEIARGL 300 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------ISETICVNPQYRSNPSFL 351 I +F E D A +VPGLF G + IS V+P NP+ L Sbjct: 301 INTFRESDQTAAALPDVPGLFTYPGAPAIPASATVSVGLAGLISVAASVDPAQGGNPNLL 360 Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 RDG S + + +N AGY + + + FD + +L+++A +S W Sbjct: 361 RDGAISGNVAYRYNTAGNAGYSARLQQLIGGMDASQPFDVTTQGKPSGSLIDFASSSTSW 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 +E R + + + + + + SN GVN+ +E+S +++VE++Y+ S+K+I D+ Sbjct: 421 IENQRKTADSNVTYQKTLLDRSTAALSNVSGVNMDDEMSLMLQVERTYSASSKIISTVDQ 480 Query: 471 MLQTLLEGV 479 MLQ+LL V Sbjct: 481 MLQSLLAAV 489 >gi|149189842|ref|ZP_01868122.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] gi|148836328|gb|EDL53285.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] Length = 457 Score = 204 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 74/481 (15%), Positives = 152/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N A + N +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGMNANRVALDVTAQNVANINTPGYSRQQAVMASLAGGKYDKTNPGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +SA S + E M S + + L +L + Sbjct: 65 VTDQYLVKQTWSTASAANYASGYTSAMSQLENMLG--ADGFSLSAGLDSLFAALNDATTK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 L + VI+ +E + + FNT + D + IS+ +S + VN I Sbjct: 123 PESTPLRQQVINESEALARRFNTLTESLHNQHKDVHDQRNAAISHANSLMSNIAEVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RD L+ ++S+++ + T + + + V + G L + Sbjct: 183 VEMQGTGGNPAQLMDTRDALVGELSKVMEVKTTDQADGSIQVSLASGQPLVMGSDASVIK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + I ++ GK+ +L + V+ +Q+ +D+MAR L Sbjct: 243 AIPDPSDPYLADIHIEFGNQTFAAKGD---LGGKLGSLHDYQVDVLKPYQDAIDDMARSL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + G + L Sbjct: 300 ADEVNAVLAAGQDLNGNAGKALFSYDPANPAAS--------------------LTITDIK 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S + ++ G D + NK +++L + +G Sbjct: 340 SDELAFSSDGNPGNSDNLKDLIAISNKPVTI----TGFGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Q +F + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADSDYQAKQSMFEQSVAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|254973892|ref|ZP_05270364.1| putative flagellar hook-associated protein [Clostridium difficile QCD-66c26] gi|255091277|ref|ZP_05320755.1| putative flagellar hook-associated protein [Clostridium difficile CIP 107932] gi|255312936|ref|ZP_05354519.1| putative flagellar hook-associated protein [Clostridium difficile QCD-76w55] gi|255515695|ref|ZP_05383371.1| putative flagellar hook-associated protein [Clostridium difficile QCD-97b34] gi|255648789|ref|ZP_05395691.1| putative flagellar hook-associated protein [Clostridium difficile QCD-37x79] gi|260682009|ref|YP_003213294.1| putative flagellar hook-associated protein [Clostridium difficile CD196] gi|260685607|ref|YP_003216740.1| putative flagellar hook-associated protein [Clostridium difficile R20291] gi|260208172|emb|CBA60493.1| putative flagellar hook-associated protein [Clostridium difficile CD196] gi|260211623|emb|CBE01861.1| putative flagellar hook-associated protein [Clostridium difficile R20291] Length = 436 Score = 204 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 80/495 (16%), Positives = 171/495 (34%), Gaps = 79/495 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++ N A + N + +I NI N D Y R+ T + Sbjct: 3 GLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + +D A + G + E + ++ + + I Sbjct: 63 QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETI-INEPSDYGISAGI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ES +K+++ D V++NA + + S +++ K++ D D I EI + Sbjct: 122 DDFFKGWESLAKDINSDSKKSLVVENASNLATLISESYKKLNKLKGDIDDNINSEIKQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L L +N +I + S +D LD+RD +L +S + + N Sbjct: 182 DMLKSLEDLNKSIDVISGSGSTPNDLLDERDRILDDLSFKLDLENSDVKNMLSD------ 235 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + ++ + + G ++ L ++ + Sbjct: 236 -------------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKID 269 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ L +++ L ++ + + D + I VNP Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VTDFFITSNVDGEDIIKVNPAI 319 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +SNP+ L+ + K + K+ D T+ ++ Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + + + + N+I S + GV+L EE++ LIK+++SY S K+ Sbjct: 361 KAFAESVGLDSQKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420 Query: 465 IMFTDKMLQTLLEGV 479 + ++L ++ G+ Sbjct: 421 MSTAVQLLDVVINGI 435 >gi|319781664|ref|YP_004141140.1| flagellar hook-associated protein FlgK [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167552|gb|ADV11090.1| flagellar hook-associated protein FlgK [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 484 Score = 204 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 155/483 (32%), Positives = 243/483 (50%), Gaps = 4/483 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ N ++Q + + RN+ +A N +Y RR + T + V + Sbjct: 1 MSLSTALSIAQSALMNTARQTSVVSRNVADASNPDYSRRQAVVTSTAPGARSVDIQRAAN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + A SA Q L + + +SP+ I+ L+ +L+ Y+ + S Sbjct: 61 ELLFRQNLAALSAWSGQNALYNGMDQLGVAVNGVDNASSPSTAIANLQQALQLYATSPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +VID A++V+++ N ++ VQ R D +I + +L L + N A+ Sbjct: 121 QNLGASVIDAAKQVMRSLNEGSKAVQDFRTQTDGQIATAVDDLNSLLGQFQDANTAVMSG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T S D D LDQRD LL+KIS + +ST R +NDMV+ T DGTTLFET+PR + F Sbjct: 181 TRSGTDVSDALDQRDALLKKISNYVPVSTFTRGDNDMVITTGDGTTLFETIPRTVTFAAS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 YT + N ++ID V +S+ G+ G + LLQ+RD V Q+QLDE AR LI Sbjct: 241 AGYTAGAAGNAVYIDNVPISAGAGGNTSASGTLAGLLQLRDGVASTMQSQLDETARGLIT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPSFLRDGGS 356 +F+E P N+ + A + N L IS ++P NP LRDGG+ Sbjct: 301 AFAETAPSMANAAGLFTWSGAPAVPAAGTLVNGLAASISVNAAMDPSTGGNPMLLRDGGA 360 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ N A Y L+ Y D ++ FDP AG++ ++ +YA +SIGW E R Sbjct: 361 NGAAYVANTGGGASYSTLLVAYGDRLDQPMTFDPAAGVSATSSVSDYAASSIGWFEGVRQ 420 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + +E+ SN GVN+ +E+S L+ +E +Y S +++ D M+ LL Sbjct: 421 QASTASDAKEALASRSAEALSNATGVNVDQEMSLLLDLEHTYQASARMMKTVDDMMTALL 480 Query: 477 EGV 479 V Sbjct: 481 NAV 483 >gi|315122285|ref|YP_004062774.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495687|gb|ADR52286.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 481 Score = 204 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 334/481 (69%), Positives = 397/481 (82%), Gaps = 1/481 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL AVFNKAQNI +NAS+QF +IV+NIEN+ NKNYVR+D +T + + V QRSEN+ Sbjct: 1 MSLSAVFNKAQNIFSNASEQFFTIVKNIENSGNKNYVRQDIITVNTGDMTVAVKQRSENQ 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 NMF+K+L A SSAIGQQRLL+SFE+LK++M A++ YNNSP+HY++KLRDSL YS N S Sbjct: 61 NMFEKLLDAKSSAIGQQRLLESFESLKDIMGAENKYNNSPSHYMAKLRDSLSVYSNNPST 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 DI GK +I +A +V N NTS++E+QKIRA ADKEI++E+S LR FLSELTVVND IKFK Sbjct: 121 DIFGKQIISDANALVYNLNTSSKEIQKIRAGADKEIDIEVSKLRGFLSELTVVNDQIKFK 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T +KHD H+ LD+RD LLQ ISE IGISTI+RNNND+++YTSDGTTLFETVPR+INFEKM Sbjct: 181 TVAKHDTHELLDKRDALLQNISEEIGISTIIRNNNDIIIYTSDGTTLFETVPRNINFEKM 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + Y+ TSES + IDGV VS +Q PKG+IKALL IRD+V+P+FQNQLDE++R LI Sbjct: 241 DLYSATSESKSVVIDGVKVSIPDQTHTAPKGRIKALLHIRDNVIPMFQNQLDEISRSLIS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 FSEKDP+AG S++V GLFIADG+KD NKL +G+SE I VNPQY+SNP FLRDGGSVSK Sbjct: 301 GFSEKDPVAGRSQDVLGLFIADGLKDPGNKLYKGMSEIIRVNPQYQSNPFFLRDGGSVSK 360 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 LWNVK A Y LINHYCDSFN F FD GI TNV+LLEYA+NSIGWLEKNRS SH Sbjct: 361 NHLWNVKGFAEYSGLINHYCDSFNAMFSFDSATGIGTNVSLLEYAKNSIGWLEKNRSTSH 420 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 D MK+QVVFNHISESYSNT GVNLQ+ELSFLIKVEQSYNISNKL+M ++ML TLLEG+ Sbjct: 421 DSRMKNQVVFNHISESYSNTTGVNLQDELSFLIKVEQSYNISNKLMMSINRMLNTLLEGI 480 Query: 480 K 480 K Sbjct: 481 K 481 >gi|83595981|gb|ABC25341.1| flagellar hook associated protein [uncultured marine bacterium Ant24C4] Length = 478 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 85/485 (17%), Positives = 176/485 (36%), Gaps = 14/485 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 M++ + FN A + +++ + N+ N+ + Y RR+ + V + Sbjct: 1 MTISSAFNNATGGLSASARMAEVVSSNLSNSLTEGYGRREVNLSSGLLGGVVLDGISRVV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + +G ++ + E + ++ L SL S S S Sbjct: 61 DPGILRDRRTADADVGSKQRGAQVLSQLEQAFGPVGDPSGVVGRLAALEQSLISASSRPS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 D V E V ++ +Q R DADK I ++ L L ++ +N + Sbjct: 121 SDQRLNIVFSGLEGVTTALHSDDDAIQIQRQDADKAITADVKTLNSTLLQIEKLNADVSR 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S +D D R + +++ I+ ++ I R + +YT G L + P F Sbjct: 181 LIGSGNDPSPVFDARQNAIDRLTSIVPLTEINRGRGQVALYTRSGVALIDGAPATFGFAH 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQ------GSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + GV ++ + G ++A +RD + Q LD++ Sbjct: 241 TGTIVAEMTLVLGALSGVTLNGEPLDLANGYGRMKGGSLEAAFTLRDQTLVGLQANLDKV 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A L+ F + PGLF+ D G+S I VN +P Sbjct: 301 AADLVKRFERPVTDPTLTLGDPGLFLD-HNGAFDPLNIDGLSSRITVNTSV--DPREGGA 357 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + G + + + + ++ + +E+ + + + + Sbjct: 358 LSRLRHGVNATASGPTGDNSQLQRWLSALDDP---IALSVGGMARSAIEHGSDQVATVGR 414 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R ++ + ++ + + + GV+ +EL L+++EQSY + ++I D M+ Sbjct: 415 LRLNAEESLGFEIARYDSLKSAELSG-GVDSDQELQRLLRIEQSYAANARVIQTLDAMMS 473 Query: 474 TLLEG 478 LL+ Sbjct: 474 RLLDI 478 >gi|115523194|ref|YP_780105.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisA53] gi|115517141|gb|ABJ05125.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisA53] Length = 490 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 251/490 (51%), Gaps = 10/490 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 M+L N A++ Q +++ RNI AD Y R++ + + V + Sbjct: 1 MTLTVALNSARSSLMATGTQASAVSRNIAGADQDGYSRKNALLATMPGSGIYVSGIQRAT 60 Query: 60 KN-MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +F+ VL A S++ Q + + + D + SPT ++KL+ +L+ Y+ Sbjct: 61 SAGLFNNVLKAVSTSAQQDTIFNGLQKIAAATVDDPELDQSPTAQLAKLKTALQQYATAP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 L + + A+ V + N + + VQ +RADAD ++ ++ + + L++ VN I Sbjct: 121 DNVTLAQAAVTAAKGVAASLNDATKTVQAVRADADSDLSTSVTTINQLLAQFETVNTTIV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T +K D D+LD RD +L K+S+ +G++ R NNDMVVYT G TLFE R + F Sbjct: 181 KGTMAKADVTDYLDLRDSILSKLSQEVGVTVATRANNDMVVYTDSGVTLFERSARSVTFV 240 Query: 239 KMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N Y+ + N ++IDGV V ++ V GKI L +RD +QNQLDE+AR L Sbjct: 241 PTNGYSAATVGNAVYIDGVPVIGASAVMPVHSGKIAGLAALRDDATVTYQNQLDEIARGL 300 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ------GISETICVNPQYRSNPSFL 351 I +F+E D A + +V GLF G + I+ + V+ NPS L Sbjct: 301 IETFAESDQTASSLPDVAGLFTYPGAPAIPASGTISAGLAGTIAVSASVDQSVGGNPSLL 360 Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 RDGG S +++N AG+ + + D + FDP A + L+++A +S+ W Sbjct: 361 RDGGISGGAAYVYNTTGAAGFSNRLQQLVDGVATSRPFDPAALAKPDANLIDFAGSSVSW 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 LE R + + SQ + +E+ SN GVN+++E+SF+++VE++++ S+KLI D Sbjct: 421 LESQRKTASEQSTYSQTLLERSAEALSNVNGVNMEDEMSFMLQVERTFSASSKLIATVDA 480 Query: 471 MLQTLLEGVK 480 ML+ LL V+ Sbjct: 481 MLKELLAAVR 490 >gi|304321121|ref|YP_003854764.1| flagellar hook-associated protein [Parvularcula bermudensis HTCC2503] gi|303300023|gb|ADM09622.1| flagellar hook-associated protein [Parvularcula bermudensis HTCC2503] Length = 481 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 92/489 (18%), Positives = 184/489 (37%), Gaps = 20/489 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55 MS + + A + AS + + NI NA + Y RRD + + + V+VV Sbjct: 1 MSFSSALSIANSGLAAASIRAQTTASNIANATVEGYSRRDVVLSERVVGSTGIGVSVVGT 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +A + + N ++ SL + Sbjct: 61 ERVTSPVLTSTRIRLEAADSFATQTADTAKSLTQIVGEPGAQNGLFGAYNRFEASLRDAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 I V D+A+ +++ F ++++ +R DAD+EI ++ + L L +N Sbjct: 121 ATPESSIFQAEVADSAQNLIRVFANASQDANDLRRDADQEIGRLVNEVNEKLERLEDING 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + LD+R L+ +I+EII ++ R ++ G L +T R+I Sbjct: 181 L-----PEARISPEILDERQKLVDEINEIIPVTAQNRGGQLKLIS-EGGQFLLDTTAREI 234 Query: 236 NFEKMN----SYTVTSESNPIFIDGVVVSSNQGSAV--PKGKIKALLQIRDSVVPIFQNQ 289 +F + + + + + ++GV ++ +A G+I AL + RD VP Q++ Sbjct: 235 SFSTTGAIGRTAVLGAPLSGLTVNGVDITPTGSAAHKSSGGRIGALFEARDVTVPGLQDK 294 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A L+ F+ + + + + +P Sbjct: 295 LDGLAFDLVSRFAG---DTVDPTIASTDAGLFTDGNTTAPTASYVGIAEALELNAAVDPD 351 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + +G D +N D+F P GIN N + ++ Sbjct: 352 EGGELYRIQAGIGATAPAPSGNGDQLNRLIDAFGAERAAPPALGINGNASAVDLVAEVNA 411 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + +++ D + + E +GV+ EL L+ +EQ+Y + ++I D Sbjct: 412 AVTEADAEAQDDALYASTRAQLAREEEQAIIGVDTDRELQQLLLIEQAYGANARVIQTID 471 Query: 470 KMLQTLLEG 478 +ML L+ Sbjct: 472 EMLDILMRL 480 >gi|30248328|ref|NP_840398.1| flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] gi|30138214|emb|CAD84222.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 466 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 165/485 (34%), Gaps = 35/485 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + A + NI NA Y R+ + + S V + Sbjct: 3 NGIMNVGVSGLRAAQVALLTTSHNISNATTPGYNRQQAIQSASTPLANSDGFIGRGVQIT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + S Q + + + AD T + ++++ Sbjct: 63 TVQRIYNQHLVSQSLQAQSQSSQLDSHYNEIKQIDNLLADTTS--GLTPALHNFFNAVQD 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + ++ NAE + F + + ++R + +I ++ + ++ + Sbjct: 121 VASNPASISSRQAMLSNAEALTARFQQMDQRLSEMREGVNSQITGSVTEINSLAQQIAGL 180 Query: 174 NDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N I +A+ A+D LDQRD L++ +S II + + +NN V+ +G +L Sbjct: 181 NMNIQAVESSANGQPANDLLDQRDALVRDLSRIINVDVVRQNNGHYNVFIGNGQSLVVGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S + G + + G + LL R + QN D Sbjct: 241 SAMTLKAVPSSSDPQRLVVAMDQQGGEI-VLPEHQLQGGSLGGLLAFRSETLDSVQNSFD 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A + +F+ + + + ++V G +G S+PS Sbjct: 300 QLAWGIADTFNTQHQVGFDLQSVAGSNFFEGTDP--------------------SDPSQA 339 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V+ + + + ++ + + + + Sbjct: 340 ARNIRVAISDPAKIAAADNNDGGVTNNINALKLAGLQTENTLQGGTASYQSAYARLVSQV 399 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + N ++ + GVNL+EE + L++ +Q + S+K+I + + Sbjct: 400 GNKTRELEVTSKAQESMLNQTDQALQSLSGVNLEEEAANLLRYQQMFQASSKVIEIGNSL 459 Query: 472 LQTLL 476 +LL Sbjct: 460 FDSLL 464 >gi|194015655|ref|ZP_03054271.1| flagellar hook-associated protein FlgK [Bacillus pumilus ATCC 7061] gi|194013059|gb|EDW22625.1| flagellar hook-associated protein FlgK [Bacillus pumilus ATCC 7061] Length = 506 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 71/500 (14%), Positives = 153/500 (30%), Gaps = 23/500 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ N+ NA+ Y R+ Sbjct: 3 STFMGLETAKRGITAQRAGLYVTSNNVSNANTDGYSRQRVTFKADNPYPVISVYDGKTYG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V T + D H++ + + E + +D + Sbjct: 63 QMGTGVQVGTVERIRDSFLDLQFRDHNNNLSYYSTKSDALSQMEGVM-NDLTDEGLNRAF 121 Query: 105 SKLRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L SL+ S KN V +A+ +V F + I+ + E++ N Sbjct: 122 DNLWKSLQVLSETKNADTASARTVVKTSAQALVDQFRLLNSSLTTIQKNLKTELDSTAKN 181 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + LS++ VN I + + +D D RD L+ ++S ++ I + + + Sbjct: 182 VNTILSQIDEVNKQIAAVEPNGYLPNDLYDTRDALVDQLSSLVDIKVSYNPSGGNALKIA 241 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 +GT + + + +T+E + + I + S A Q++ + Sbjct: 242 EGTVNIDIIGANGQSAGTILNGITNEKSELQISYDNTTGLVNSLQFGTTTIAADQLQVNG 301 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + D +A E G S + Sbjct: 302 KVKALVEAYGYMSNGAEKGMYPDMLAELDEVAQVFMDTFNDVHKQGYTLNGTSGQDFFDI 361 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---NTNVT 399 + ++ + + + S + T Sbjct: 362 ENNNDLNKGLAARIKVSDVILASTDNIAASLNQTKGDGSNATKLAGIQDLKVPIGGNTTT 421 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + +Y +N I + + L S + N +E +T V++ EE++ +I+ + +YN Sbjct: 422 IQDYYQNVIAEMGIQGKKNITLESSSAALVNSANERRMSTSAVSIDEEMTNMIQFQHAYN 481 Query: 460 ISNKLIMFTDKMLQTLLEGV 479 + +++ D++L ++ G+ Sbjct: 482 AAARVVTLQDEILDKVINGM 501 >gi|167464316|ref|ZP_02329405.1| flagellar hook-associated protein FlgK [Paenibacillus larvae subsp. larvae BRL-230010] Length = 519 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 77/514 (14%), Positives = 166/514 (32%), Gaps = 40/514 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S F A+ + I NI N Y R+ Sbjct: 3 SSFFGFETAKRSMLASQNVLNIIGHNISNQHIPGYSRQRVNLNASMPIEYPGIGHTTIPG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D+ +G + + E + + + + Sbjct: 63 QMGTGVDMHSITRIRDRFLDEQFRNEYKNLGNWEIQKDTLDKLEGIF-PEPSDTGLRKVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 DS +SK+ ++ K + NA + + N ++++++ I DK + ++I ++ Sbjct: 122 ENFWDSWAEFSKDSDKNTGRKLIRQNAIALTEAINQASKQIKDISQGLDKSLNMKIEDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN----NDMVVY 220 L ++ +N+ I A+D D+RD + ++S+++ I+ + V Sbjct: 182 SILKTISTLNNEITRVEKMGDHANDLRDERDRMTDELSKMMNITVSEGPEGYNISMGKVN 241 Query: 221 TSDGTTLFETVPRDI----------------NFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 GT + I ++Y + I + + Sbjct: 242 LLSGTEVNPVTKESIEESFKSGDLSSGELAGLITSRDTYVHDYKKQLDDIANTIANGEIT 301 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +PKG + + D V N+ + G P Sbjct: 302 ITIPKGSVLPEGTVLDGVTYTGANRTLTEDLTVTVKGLNGLHQLGYINGNPPEAGGPFFT 361 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D +E IC+NP ++P+ + ++ + K ++G L + Sbjct: 362 TKDGSDVI-TAENICLNPDIINDPNKIAS-SMATEGTGADEKLISGNNTLAKLMAQLKDT 419 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 F F TN T+ ++ + +G L ++ + + ++ GV Sbjct: 420 KFTFSGAGRGITNSTINDFYGSLVGQLGVQSKEATRQYENEGKLVVQADTRRTSVSGVVE 479 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE+ ++K S+N + + + D++L L+ G Sbjct: 480 LEEMMEMVKYNHSFNAAARFMTTYDEILNKLING 513 >gi|74101664|gb|AAZ99754.1| FlgKL [Aeromonas hydrophila] Length = 437 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 57/480 (11%), Positives = 146/480 (30%), Gaps = 53/480 (11%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRSE 58 N + N A +NI N + Y R++ M + V V R Sbjct: 2 LNIGFSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEVTGVRRI 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + S+ G + E + + N + SL + + Sbjct: 62 TDDYLVSQHWRSRSSTGASYSFHQYINTTEQLLGSESMN--IAKGLDSFFASLSAALDSP 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++ +A + F + D ++ +S + +L ++ +N I Sbjct: 120 ETPAQRSQIVSSAGALANRFGQLNESMLTQEKQIDDQLNSTVSQVNSYLKQVAELNTQIS 179 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + D R+ +++++S + + +++ + G L Sbjct: 180 EQASKGVNTSVLEDSREQIVRELSTFMEVRVNRQSDGSFSLSLPQGQPLVLAGSSSTLSL 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +S +++ S + G + +++ R +V+ +++L+++A+ L Sbjct: 240 AGDSLSLS----------FGPQSFDVPKLHGGSLAGVIEYRTTVLRPLRDELNQIAKKLA 289 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 F+ K + PG + + + DG + Sbjct: 290 DDFNAKQSGGVDLHGNPGKSLFTYDPLNPSGTL------------------KIADGFTGD 331 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 +G + + + + +G + + Sbjct: 332 DLAFAKAGGGSGDNRNLQELLTIKDSQY---------------DAYSALLGRMAVQSGQA 376 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ S+ GVN EE ++ ++Y + K+I +D++ ++L Sbjct: 377 KATMEADANMEKQLATKLSSVSGVNTDEEGVKIMAYTKAYQANAKVISTSDQLFNSILNM 436 >gi|319898657|ref|YP_004158750.1| flagellar hook-associated protein FlgK [Bartonella clarridgeiae 73] gi|319402621|emb|CBI76166.1| Flagellar hook-associated protein FlgK [Bartonella clarridgeiae 73] Length = 456 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 112/481 (23%), Positives = 217/481 (45%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N A+N + + ++ RNI A + NY RR + P V R + Sbjct: 1 MSLNLALNSARNSLKATTGRLDTVSRNIVRAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S L + + D ++NSP+ + + + +L+ Y+ + + Sbjct: 61 IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGADKFSNSPSKLLGEFQKALQLYANDPQQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G +D A ++ + NT + E++K+ D + +I+ + + L + ++ + + Sbjct: 121 RSNGDAAVDRARDLAKGLNTGSYEIEKLYNDVNSDIQDSVDYINDLLQKFHELDQLVVRE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + D ++DQRD +L+++S+ IGI+T+ ++ M +Y DG+TL++ +PR ++F+ Sbjct: 181 RNANRDDSVYMDQRDAILKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S +FIDGV + + + G + LL++RD +VP +Q QLDE+A L+ Sbjct: 241 ASLPPGISGKQVFIDGVPLGHSSFLNPNGGGNLGGLLKLRDDIVPQYQKQLDEIANALMH 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F + + + G R + Sbjct: 301 MFPGPPSLFLDGDQPSGQIGPLEGLAG-------------------------RIQLNPIF 335 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + D + D+FN F G++ + ++ ++++NS+GWLE RS++ Sbjct: 336 DSKTEGGGPEHFGDNLQALVDAFNGKQQFGTGTGLDPDQSIKDFSKNSVGWLEGLRSNAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F H +E+ SN GVN +EL+ ++++EQ+Y ++++I KML LL V Sbjct: 396 KEAKYQGTMFLHAAEALSNATGVNADDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|323341352|ref|ZP_08081596.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC 25644] gi|323091229|gb|EFZ33857.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC 25644] Length = 514 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 76/512 (14%), Positives = 161/512 (31%), Gaps = 37/512 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPE 48 MS L A + + NI N + Y R+ T Sbjct: 1 MSGLFGTLGTATSGITANQVALQTTAHNIANTNTDGYSRQRVHMTTKPPYVIAGTGTIGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + +S E + + ++ ++ L Sbjct: 61 GVNVTGVERVVDDFVRSQIREANSKYTYNTQKSDTLGQLEDIL-HEPSDDGVIKSLNTLT 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DS + ++N V++NA + + A ++ ++ D+ ++ + + + Sbjct: 120 DSWQKLAENPELGTSKTLVVENANSFADSIHQMATQINQLHKDSISNLQKSVLDFNEKID 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N + T+ +D LDQRD LL+ IS ++ I+T + DG T+ Sbjct: 180 QLADINKKVFTLTSRGETPNDLLDQRDTLLKDISGLVNINTEFDEYGRTTLSV-DGQTIL 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVV---------------------SSNQGSAV 267 + N + T + + + G + + Sbjct: 239 DFKNETHNTLSVVVGTDANGNALVSDRGDSSKANVALGRQAEVGTVMLTKKDDAGNTAYS 298 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + +DE+ + + + +N F G Sbjct: 299 EIKTSEGDMGGYQESAKEILEHMDELNDFIAKIGKATNMVMTGGQNKLDGFFTLGNDPSR 358 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 L +++ I +P L GS + A D+ + Sbjct: 359 YALDFKVNDAIAKDPSKIPAGKALDGTGSAGDGSRALAVSWAMKTKFKTPVRDADLDAYD 418 Query: 388 FDPVAGI--NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + T E N + ++ + ++ +VV N++ + GVN+ Sbjct: 419 ESTMKFNESQDGQTFAETFNNIVTKNGISKQKADNMAAAQKVVLNNLENKNESMSGVNIN 478 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EE+S +IK +Q + + +++ +ML TL+ Sbjct: 479 EEMSDVIKFQQGFQANTRVLSVIAEMLDTLVN 510 >gi|89056665|ref|YP_512116.1| flagellar hook-associated protein FlgK [Jannaschia sp. CCS1] gi|88866214|gb|ABD57091.1| flagellar hook-associated protein FlgK putative [Jannaschia sp. CCS1] Length = 487 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 74/487 (15%), Positives = 156/487 (32%), Gaps = 15/487 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MS+ + + A + +++ + N+ NA + Y R V +V Sbjct: 1 MSISSTLSSALSGLTASARAADIVSSNLANAMTEGYAVRRLDLAARQTGNDGAGVRIVGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++ +G + F E M S + ++ L + + Sbjct: 61 TRQEDTILIGQRRLATADLGANQANADFMTRLEAMLGAPDDPGSLSARLADFEGKLIAAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + A + N + +Q R AD I + + + L L +N Sbjct: 121 NAPWNTTNLTGAVQGASAIADTLNELSSGIQTERKRADASIGIAVDQINGALESLAELNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I S D +D ++ L+ +++ + + T NN + VY+ DG L ++ Sbjct: 181 RILSVGYSGGDTAALVDAQNQLVDQVAPYVPLQTRRDNNGLLNVYSDDGHVLVNYRAAEL 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 F + + G+ + + A G+++AL +RDS P Q + Sbjct: 241 GFVAKPTMDPYQSIGNGTLSGLTLDGRALRMDGEYPAFAGGQLRALFDVRDSQAPEAQTR 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A L D + G + + + P+ Sbjct: 301 LDGIALDLAER---FDAAGLDPSIAAGSPSLFTDAGILVDGSNELGLASRIRVNAAVVPN 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + V+ G + + + A ++ E ++ Sbjct: 358 EGGAVWRLRDGLGAAVEGPTGNATFLTAQIERLSTTQTTTSTAFSGAQRSMSELISENLS 417 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + R + + + + GV+ EL L+++EQ Y + ++I Sbjct: 418 IVGLGRVTAETNLSSASAQNTALKTAELAG-GVDSDAELQRLLQIEQMYAANARVINVAG 476 Query: 470 KMLQTLL 476 +M+ LL Sbjct: 477 QMMDELL 483 >gi|157693942|ref|YP_001488404.1| flagellar hook-associated protein FlgK [Bacillus pumilus SAFR-032] gi|157682700|gb|ABV63844.1| flagellar hook-associated protein 1 [Bacillus pumilus SAFR-032] Length = 506 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 75/500 (15%), Positives = 156/500 (31%), Gaps = 23/500 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ N+ NA+ Y R+ Sbjct: 3 STFMGLETAKRGITAQRAGLYVTSNNVSNANTDGYSRQRVTFKAENPYPVISVYDGKTYG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V T + D H++ + + E + +D + Sbjct: 63 QMGTGVQVGTVERIRDSFLDLQFRDHNNNLSYYSAKSDALSQMEGVM-NDLTDEGLNRAF 121 Query: 105 SKLRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L SL+ S KN V +A+ +V F + I+ + E++ N Sbjct: 122 DNLWKSLQVLSETKNADTASARTVVKTSAQALVDQFRLLNSSLTTIQKNLKTELDSTAKN 181 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + LS++ VN I + + +D D RD L+ ++S + I + + + Sbjct: 182 VNTILSQIDEVNKQIAAVEPNGYLPNDLYDTRDALVDQLSSFVDIKVSYNPSGGNALKIA 241 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDS 281 +GT + + + +T+E + + I + S I A + Sbjct: 242 EGTVNIDIIGANGQSAGTILNGITNEKSELQISYDNTTGLVNSLQFGTTTIAADQLQVNG 301 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 V M+ + + + + + L + Sbjct: 302 KVKALVEAYGYMSNGTEKGMYPEMLAELDEVAQVFMDTFNDVHKQGYTLNGTSGQDFFDI 361 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVT 399 L VS L + N+A + + N + T Sbjct: 362 ENNNELNKGLAARIKVSDVILASTDNIAASLNQTQGDGSNATKLANIQDLKLPIGGNTTT 421 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + +Y +N I + + L S + N +E +T V++ EE++ +I+ + +YN Sbjct: 422 IQDYYQNVIAEMGIQGKKNMTLESSSAALVNSANERRMSTSAVSIDEEMTNMIQFQHAYN 481 Query: 460 ISNKLIMFTDKMLQTLLEGV 479 + +++ D++L ++ G+ Sbjct: 482 AAARVVTLQDEILDKVINGM 501 >gi|328545490|ref|YP_004305599.1| flagellar hook-associated protein K [polymorphum gilvum SL003B-26A1] gi|326415231|gb|ADZ72294.1| Flagellar hook-associated protein K [Polymorphum gilvum SL003B-26A1] Length = 496 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 147/496 (29%), Positives = 239/496 (48%), Gaps = 16/496 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54 MSL AQ+ + A++ RNI A + Y R+ + + V V Sbjct: 1 MSLSVALQVAQSALAARQTETATVSRNIAGAQDPGYTRKSVVLSTVVSASGQTGGVRVDG 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L +S Q+ + +D SP + KL S+++Y Sbjct: 61 IARTTDSALYNSLVRATSVATSQQAIVEGLDKLNQTVSDTELELSPAAALGKLEISIQNY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + IL +T++D A+++ N VQ +RA+AD ++ + + LS+L +N Sbjct: 121 ASDPGNAILAQTMLDAAKDMATTLNEYTALVQNVRAEADADMASSVKTINNLLSQLESLN 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I T D D LD RD +L +SE IGIST+ R++ +VVYT G TLFET R Sbjct: 181 TIIVKGTQGGADVSDALDARDRVLLSLSEEIGISTLTRSDGGVVVYTDGGVTLFETTART 240 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++F N+Y+ + N ++IDGV V+ +N + G++ L ++RD + +Q+QLDE+ Sbjct: 241 VSFTPTNTYSAATVGNAVYIDGVPVTGANAIMPISSGRLHGLSELRDDIAVTYQSQLDEI 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICVNPQYRSN 347 AR LI +F+E D G + GLF G + I + V+P N Sbjct: 301 ARGLIEAFAESDQSGGGGPDQAGLFTYAGAPAVPAASTLVAGLAGDIRISASVDPDQGGN 360 Query: 348 PSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 LRDGG + + +N +LAGY D + + ++FN+ +FD ++ TL +A Sbjct: 361 LDLLRDGGISDPLNPDYDYNPGDLAGYSDRLQQFLNAFNQPRVFDGGVELDPTDTLKGFA 420 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +S WL++ R + V+ +ES SN GVNL EE++ L+ +E++Y + KL Sbjct: 421 SSSASWLQRERQTATSNLEVQAVIVTRTAESLSNATGVNLDEEMTRLLDIERAYAAAAKL 480 Query: 465 IMFTDKMLQTLLEGVK 480 I D+ML+ LL + Sbjct: 481 IAAVDRMLEDLLTAAR 496 >gi|240137258|ref|YP_002961727.1| FlgK protein [Methylobacterium extorquens AM1] gi|240007224|gb|ACS38450.1| FlgK protein [Methylobacterium extorquens AM1] Length = 487 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 204/487 (41%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ S Q A RN+ A++ Y R+ VT Sbjct: 1 MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + L + D +P ++ + +L++ + Sbjct: 61 PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + +++A+ + + + +A + RA+AD I +S + L N A+ Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LD RD +L +S+ IG+ + R DM +YT G TLFE PR + F Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + IDGV V+ + G+I L+ +RD ++ QLD +A LI Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354 +F+E D + +S GLF A G L + IS V+P + + LR G Sbjct: 301 AFAESDAVGLDSGPRAGLFTAGGSGILPPAAGRTGLAASISVNAAVDPARGGSVALLRSG 360 Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + + DP G+ T+ L + A +S GWLE Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPALGLGTSAGLPDLATSSAGWLEA 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R D+ + + +E+ SN GVN +E + +++E+SY+ S KLI + +L+ Sbjct: 421 QRKDASTEASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480 Query: 474 TLLEGVK 480 TLL+ V+ Sbjct: 481 TLLDAVR 487 >gi|300024587|ref|YP_003757198.1| flagellar hook-associated protein FlgK [Hyphomicrobium denitrificans ATCC 51888] gi|299526408|gb|ADJ24877.1| flagellar hook-associated protein FlgK [Hyphomicrobium denitrificans ATCC 51888] Length = 487 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 129/486 (26%), Positives = 224/486 (46%), Gaps = 7/486 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-NVTVVTQRSEN 59 MSL + A++ S+Q + + RNI + + R+ P V+V + Sbjct: 1 MSLTLSTDTARSSLQATSEQISVVSRNIARVHDADATRKIATLVSGPGVGVSVPRIDRTS 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + +SA Q + S + D +SP I+KL +L++YS N Sbjct: 61 DQLLFNTYLTANSASQAQTSITSALGQLQSTVDDTDQEHSPAALIAKLSATLQTYSGNPQ 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + +V+ A+ V N+++ V ++R AD +I ++N+ LS+ +N+ + Sbjct: 121 NPAVAASVVSAAKNVSNALNSASATVTQVRQQADADIATSVANINDLLSQFENLNNQVIR 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 +++ D D LD RD +L+++S +GI T+ R N DM +YT G TLF+ PR + FE+ Sbjct: 181 GSSNGRDVTDVLDARDAVLKQLSTEVGIRTVSRANGDMAIYTDSGVTLFDRAPRAVTFEQ 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + ++ DGV ++ + GK+ L+ +RD + +Q+QLDEMAR LI Sbjct: 241 TQNLAAGAPGGAVYADGVPIAGTSHILEIQSGKLAGLMSVRDDIAVTYQSQLDEMARGLI 300 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ-----GISETICVNPQYRSNPSFLRD 353 +F+E D A + I V+P N +RD Sbjct: 301 NAFAETDQSATPTLPAATGLFTYSGGPAIPASAMAGLASSIKINASVDPGQGGNAELIRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 GG + +N N + D I S N FD + + ++++YA+NS+ WLE Sbjct: 361 GGISGASYKYNSANAPAFTDRIQSLISSLNTGQTFDASTQLPASSSVMDYAKNSVSWLEA 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R + V + S S GVNL EE++ L+ +E+++ S++LI ++ML Sbjct: 421 LRQSATAEADYRSTVAQRATTSLSQATGVNLDEEMTNLLDLERTFQASSRLINTVNEMLS 480 Query: 474 TLLEGV 479 TL++ + Sbjct: 481 TLIQSL 486 >gi|262396029|ref|YP_003287882.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|262339623|gb|ACY53417.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 457 Score = 201 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 144/481 (29%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N A + +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +++ + + VN + Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+ I I T + + + V + G L Sbjct: 183 VEMQGTGGNPSQLMDERDKLIGELSQTIEIRTTEQPDGSVQVTLTSGQPLVMGTDHGKLA 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q L++MA+ L Sbjct: 243 AVPDPSDPYVADLHVTFSSQSFAIGDS---LGGKLGAINDYQTDVLKPNQLALNDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + L Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LDITELT 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ G D++ + NK + +L + + +G Sbjct: 340 PGELAFSSDGTPGNADVLQSLINLSNKPVSVTGYGFV----SLNDAFSSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|91224193|ref|ZP_01259456.1| putative flagellar hook-associated protein [Vibrio alginolyticus 12G01] gi|91191104|gb|EAS77370.1| putative flagellar hook-associated protein [Vibrio alginolyticus 12G01] Length = 457 Score = 201 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 65/481 (13%), Positives = 146/481 (30%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N A + +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +++ + + VN + Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLYNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+ I I T +++ + V + G L Sbjct: 183 VEMQGTGGNPSQLMDERDRLIGELSQTIEIKTTQQHDGSVQVTLTSGQPLVMGTDHGKLE 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q L++MA+ L Sbjct: 243 AIPDPSDPYLADLHVTFSNQSFAIGDS---LGGKLGAINDYQTEVLKPNQLALNDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + T Sbjct: 300 ADEYNAVLATGKDLNGNPGKPLFSYDPANPAASLDITKLTPDE----------------- 342 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ G D + + NK +V+L + + +G Sbjct: 343 ---LAFSSDGTPGNADALQSLIELSNKPVAVSG----YGSVSLNDAFSSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ + + + N VN EE + L+ ++N + K+I +++L ++L+ Sbjct: 396 ANADYQAKLAMNKQAHAARDNVSSVNSDEEAANLMMFANAHNANMKVISTANQLLDSILQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|254559269|ref|YP_003066364.1| FlgK protein [Methylobacterium extorquens DM4] gi|254266547|emb|CAX22311.1| FlgK protein [Methylobacterium extorquens DM4] Length = 487 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ S Q A RN+ A++ Y R+ VT Sbjct: 1 MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + L + D +P ++ + +L++ + Sbjct: 61 PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + +++A+ + + + +A + RA+AD I +S + L N A+ Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFEAANRAVTKT 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LD RD +L +S+ IG+ + R DM +YT G TLFE PR + F Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + IDGV V+ + G+I L+ +RD ++ QLD +A LI Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354 +F+E D + +S GLF G L + IS V+P + + LR G Sbjct: 301 AFAESDAVGFDSGPRAGLFTVGGSGILPTGAGRTGLAASISVNAAVDPARGGSVALLRSG 360 Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + + DP G+ T+ L + A +S GWLE Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPDLGLGTSAGLPDLATSSAGWLEA 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R D+ + + +E+ SN GVN +E + +++E+SY+ S KLI + +L+ Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480 Query: 474 TLLEGVK 480 TLL+ V+ Sbjct: 481 TLLDAVR 487 >gi|153831692|ref|ZP_01984359.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] gi|148872202|gb|EDL71019.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] Length = 457 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 71/481 (14%), Positives = 151/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57 N A + N +N+ N + Y R+ +T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S + + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYSAGYTTAMSQLENTLG--ADGFSVSAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +S+ ++ + VN I Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RDVL+ ++S+I+ I T + + M V + G L Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLA 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 K + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AKRDPSDPYLADLSVEFASQSFVID---HSVGGKLGAINDYQTEVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + L Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G D++N NK +++L + +G Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|149203101|ref|ZP_01880072.1| flagellar hook-associated protein K [Roseovarius sp. TM1035] gi|149143647|gb|EDM31683.1| flagellar hook-associated protein K [Roseovarius sp. TM1035] Length = 482 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 87/484 (17%), Positives = 164/484 (33%), Gaps = 12/484 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58 MSL + + A + ++ I N+ NA + + R+ + V V + Sbjct: 1 MSLGSALSSALSGLAANTRAVDVISGNLANALTEGFAPREVTLAATRDGRGVQVTGIVRQ 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 SA + +F E NS T ++ L +LE+ + Sbjct: 61 VDLGLLSDRRLADSARAASEVQAAFARAVESSVGTPDAPNSLTGRLATLEVALETAATRP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + V+ A+++ N +A ++ ++R AD++I + L L E+ +N I Sbjct: 121 EDTNRLDAVLSAAQDLTAGINDAAADIARLRTAADRDIATTVQELNAGLQEVAALNVQIT 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + D DQR + +S I+ + + R + + + T+ G L + + F Sbjct: 181 TGQSRGTDITALEDQRQRTIDTLSLIVPLRQVPRGDASVALVTTAGGMLLDGRAVKLTFA 240 Query: 239 KMNSYTVTSE-----SNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + I IDG V + G++ ALL IRD ++LD Sbjct: 241 ATPLVTPHMTHKEAQLSGIAIDGADVPIGADRGPLQGGRLGALLDIRDRAAVEANSKLDA 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +AR L+ ++ PG + + + +PS Sbjct: 301 LARDLVER---FQAPGLDATRAPGAPGLLTDAGAIFEAGNALGLAGRIAVTRLVDPSQGG 357 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + G L+ + + + + +A I L Sbjct: 358 ALFRLRDGLGATDGGPPGAGALLGALSHALTQTSVLPSGLLGGAARSAANHAATLISSLS 417 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + R + + GV+ EL L+ VEQ++ + ++I D +L Sbjct: 418 QERVTTEARLSFATGQSAEFRAQELA-TGVDSDAELQRLLLVEQAFGANARMIQTIDDLL 476 Query: 473 QTLL 476 TLL Sbjct: 477 DTLL 480 >gi|163850124|ref|YP_001638167.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens PA1] gi|163661729|gb|ABY29096.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens PA1] Length = 487 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 205/487 (42%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ S Q A RN+ A++ Y R+ VT Sbjct: 1 MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + L + D +P ++ + +L++ + Sbjct: 61 PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + +++A+ + + + +A + RA+AD I +S + L N A+ Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LD RD +L +S+ IG+ + R DM +YT G TLFE PR + F Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + IDGV V+ + G+I L+ +RD ++ QLD +A LI Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354 +F+E D + +S GLF A G L + IS V+P + + LR G Sbjct: 301 AFAESDAVGFDSGPRAGLFTAGGSGTLPTAAGRTGLAASISVNAAVDPARGGSVALLRSG 360 Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + + + DP G+ T+ L + A +S GWLE Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALSAARPVDPALGLGTSAGLPDLAASSAGWLEA 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R D+ + + +E+ SN GVN +E + +++E+SY+ S KLI + +L+ Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480 Query: 474 TLLEGVK 480 TLL+ V+ Sbjct: 481 TLLDAVR 487 >gi|319405422|emb|CBI79041.1| Flagellar hook-associated protein FlgK [Bartonella sp. AR 15-3] Length = 456 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 115/481 (23%), Positives = 218/481 (45%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N A+N + + ++ RN+ A + NY RR + P V R + Sbjct: 1 MSLNLALNSARNSLKATTGRLDTVSRNVVRAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S L + + D ++NSP+ + + + +L+ Y+ + + Sbjct: 61 IHLLNNYLVKASEAAASGTLSNGLNRLSDIYGADKFSNSPSKLLGEFQKALQLYANDPQQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G+ +D A ++ + N +RE++K+ D + +IE ++ + L + ++ + + Sbjct: 121 RSNGEAAVDRARDLAKGLNAGSREIEKLCNDVNSDIEDSVNYINGLLQKFHELDQLVVRE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + D ++DQRD +L+++S+ IGI+T+ ++ M +Y DG+TL++ +PR ++F+ Sbjct: 181 RNANRDDSVYMDQRDAVLKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKIPRTVSFQFS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S IFIDGV + + G + LLQ+ D ++P +Q QLDE+A LI Sbjct: 241 TSLPPGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLQLCDDIIPQYQKQLDEIANALIQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F + + + G A R + Sbjct: 301 MFPGPPSLFLDGDQPSGQISALEGLAG-------------------------RIQLNPIF 335 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + D + D+FNK F G++T +++++ +NS+ WLE RS++ Sbjct: 336 DSKTEGGGPEHFNDNLQELVDAFNKKQKFGTGTGLDTEQSIMDFGKNSVSWLEGLRSNAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F H +E+ SN GVN +EL+ ++++EQ+Y ++++I KML LL V Sbjct: 396 KETRYQGAMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|269960122|ref|ZP_06174498.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] gi|269835093|gb|EEZ89176.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] Length = 457 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 70/481 (14%), Positives = 151/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57 N A + N +N+ N + Y R+ +T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S + + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYSAGYTTAMSQLENTLG--ADGFSVSAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +++ ++ + VN I Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRTAALNHANSLMANIADVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RDVL+ ++S+I+ I T + + M V + G L Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLT 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 K + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AKPDPSDPYLADLSVDFASQSFVID---HSVGGKLGAINDYQTDVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + L Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G D++N NK +++L + +G Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|254488055|ref|ZP_05101260.1| flagellar hook-associated protein FlgK [Roseobacter sp. GAI101] gi|214044924|gb|EEB85562.1| flagellar hook-associated protein FlgK [Roseobacter sp. GAI101] Length = 490 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 95/489 (19%), Positives = 186/489 (38%), Gaps = 20/489 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56 MS+ + A A + I N+ NA Y R + V + Sbjct: 7 MSISGALSSAMQGLRAAGRGSEVIASNLSNALTPGYGVRSLELSADTTATHGGVKIDGVS 66 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + E + S + ++L +L + + Sbjct: 67 RLVNESIVHDKRIAEAGQANASAILDLYIKIEDLLGAPDDPASLSAQTAQLEKNLITAAS 126 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 TV+ +A + FN ++ +QK+R AD+ IEL++ L L ++ +N Sbjct: 127 RPDAPERLSTVVASARILANTFNEASDGLQKVRTTADRTIELQVDQLNNALLQVQELNAQ 186 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I +++ LD R ++ +IS ++ + T+ R+N + +Y++ G L +++ +I Sbjct: 187 ITKTQVQGNNSSGLLDLRQRVIDEISVLVPVRTVARDNGQVAIYSTGGAVLLDSLAAEIG 246 Query: 237 FEKMNSYTVTSESNPIFIDGVVV------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 FE+ N T + + G+ + + + + G I A +IRD + Q Q+ Sbjct: 247 FERSNLVTPYMSESAGTLSGLTINGIAFRTGSSSGVLSGGSIAAQFEIRDEIAVEAQAQI 306 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSN 347 D +AR L+ F + G + GLF +G N L Q + V+P Sbjct: 307 DALARDLVERFQDPAVDPGLAIGDAGLFTDEGNFFDPANENGLAQRLVLNAAVDPDQGGE 366 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 LRD G L+N+ + + + + + ++ Sbjct: 367 TWRLRD------GINAAGPGDVGDATLLNNMISALSTGRVSSSGIFSGGSYSTIDLTSTL 420 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 R ++ + S ++E + GV+ +EL L+ VEQ++ + +++ Sbjct: 421 TSHYGAERLNAEQIQSFSATQVTELTERLLSE-GVDSDQELQKLLLVEQAFAANARMVQA 479 Query: 468 TDKMLQTLL 476 D+M+QTLL Sbjct: 480 VDEMMQTLL 488 >gi|219670203|ref|YP_002460638.1| flagellar hook-associated protein FlgK [Desulfitobacterium hafniense DCB-2] gi|219540463|gb|ACL22202.1| flagellar hook-associated protein FlgK [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 64/578 (11%), Positives = 166/578 (28%), Gaps = 101/578 (17%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S + A+ + + NI NA+ Y R+ + Sbjct: 3 STFSGLELARRALESQQIALDTTGHNIANANTIGYTRQVVNLQATSPDSIPGMGHYLSIG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 VTV + D+ +S ++ A E + ++ +NS ++ +++ Sbjct: 63 TGVTVQSIERARDIFIDRQFRWENSKQEYWATRENTLAQIEGLL-NEPSDNSLSNDLTQF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + N +++ A + + +++ + + D + ++I + + Sbjct: 122 WSAWSVLANNPENLGARSVILERAATLADTLHHIDQQITEAQKSLDSSVRVQIDQINSYA 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223 +++ +N IK + + +D LD+RD L+ +S+++ + + + + + Sbjct: 182 NQIQELNFQIKKVQITGDNPNDLLDKRDALIDDLSKLVNVRVVESRDPNFTDREVNIFKL 241 Query: 224 --------GTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIK 273 L + + + ++ +G+++ Sbjct: 242 YIGNEKATNQILVDDTKAYQLATPETTDADGLPFAEVKWAAGHPQAGASVDLGEGQGELQ 301 Query: 274 ALLQIRDSV-------------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + +R S + ++Q +++AR + + + + E G Sbjct: 302 SSILMRGSGFEYSAGDTKATAHLAYLRDQFNQLARGIAEALNAIHRTGIDKEGNFGEDFF 361 Query: 321 DGIKDLDNKLCQGISET--------ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 I + + S++ + P Sbjct: 362 TSADGNPISAGNIKVNQDLIDDPWKIATGKDNFGDGEIAKALSSLATGWTGLTDLYLKNP 421 Query: 373 DLINHYCDSFNKNFIFDPVAG------------------------------INTNVTLLE 402 D D AG +T Sbjct: 422 AGNTVLIDPATGAITTDTAAGRPMAWATSADTPLKYPVGHPLEGDPILIDPATGTITTDT 481 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHI---------------------SESYSNTVG 441 + + + + + + VG Sbjct: 482 AIGKPVVLAQTPPLSASSIGDYYGAALAELGVDAQQATRMKESQAVLVTHMYNQRQSVVG 541 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 VN+ EE++ LIK ++SY + +++ D ML T++ G+ Sbjct: 542 VNMDEEITNLIKFQKSYTAAARIVTMLDSMLDTIVNGM 579 >gi|251799725|ref|YP_003014456.1| flagellar hook-associated protein FlgK [Paenibacillus sp. JDR-2] gi|247547351|gb|ACT04370.1| flagellar hook-associated protein FlgK [Paenibacillus sp. JDR-2] Length = 518 Score = 199 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 77/520 (14%), Positives = 172/520 (33%), Gaps = 51/520 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ + NI NA+ Y R+ T + Sbjct: 3 STFHGLETAKRSIFTTQTALNTTGHNISNANTSGYSRQRVNFTAARPIEAYGYSHSTAAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D ++ +G + E + ++ + I Sbjct: 63 QLGTGVEASSITRVRDKFLDSQFYSEYKWLGNYTVQSDTLEKLETI-VNEPSDTGLQTVI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S +S SK +++ + ++ FN +++++ +++D + ++ + NL+ Sbjct: 122 SNFWNSWSDLSKTPESADGRAVLVEQTKAMMDAFNYTSKQLADLKSDLTENAQINLDNLK 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 S + +N I+ DA+D DQRD L+ ++S + I ++ + + Sbjct: 182 SISSTIANLNGQIQRIEGIGDDANDLRDQRDALVDELSGLANIKVSDLSDGY-TITMGNV 240 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS--- 281 + + ++ T E+ + + + +G + L Q+ ++ Sbjct: 241 SLVAGKSAEGSQGLTLDDMTAAIENGDLNNGAIYGTMQSRDKYVQGYMDQLNQMANTIAN 300 Query: 282 ----------------------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 L E V + + + G + Sbjct: 301 GDIQVTIPKGSVLPEGTVLNGVTYAGANRTLAEDLTVTVQGLNGLHQLGYTMNGEQGEPL 360 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 D + + I +NP+ ++P+ L V+ +AG + Sbjct: 361 FT---DANGNTDNLTAANIQLNPKIAADPTLLATSMKVTFNDDGTETVVAGNNSMAVLMS 417 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + F FD N T+ + R +G L + L Q + + + + Sbjct: 418 QARDTKFAFDA----TDNNTISGFFRAVVGQLGVQSKEMQRLQTNQQTIVDQVDSRRMSV 473 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GV+L EE+S L+K + +YN S +++ D+ L ++ + Sbjct: 474 SGVSLDEEMSDLVKFQHAYNASARVMTVIDETLDRIINSM 513 >gi|320353947|ref|YP_004195286.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] gi|320122449|gb|ADW17995.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] Length = 465 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 86/487 (17%), Positives = 154/487 (31%), Gaps = 34/487 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 SL+ + + NI NA + Y R+ T S Sbjct: 3 SLITSLYTGASGIFTSQTAIQVTGNNITNAATEGYSRQTAHVTSSTPLTQGGLTYGTGSA 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V N + L A S+ GQ + L ++ D + I D+ Sbjct: 63 VDAIDRANDAFITRQLMAQSATYGQYEAAST--PLADIERILDIGDTGLASAIDSFFDAW 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E S N S + V+ A ++ + N A+++ ++ + + IE I +L L ++ Sbjct: 121 EELSTNPSGVAERQQVVQEAADLAYHCNQIAQQLDEVVSGINTSIESAIPDLNDQLRQIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N +I + DA+ DQRD+L+Q+ SE G + +N + + +G L Sbjct: 181 DLNQSIMRTELAGGDANTLRDQRDLLVQQASETCGAAAYTDDNGMVCLQLQNGLPL---- 236 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N S I + + + G +K L++RD +P + LD Sbjct: 237 -VTGNVAASFSTAQVDGLTQISLTSAGTTFSLDDQDFGGALKGWLEVRDVTLPELHSDLD 295 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + ++ G + IA + + + L Sbjct: 296 RLAYTIATDVNDLISTMGGLDQNGNAAIALFSLVAPTNPLANAWDGAAASIAAAFDDPTL 355 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G +S T E Sbjct: 356 IAAGITGTTAD-----------------NSLCLEIAALRDTTSINGATYAEEYARIAANA 398 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + L S + + ++ GV+ EE+ LI+ + Y ++ I +M Sbjct: 399 GLLVSSNEQLLSSSGDLLDALNSKRDAVSGVSTDEEMVLLIQYQAGYEAASNYISVVKEM 458 Query: 472 LQTLLEG 478 L TLL Sbjct: 459 LDTLLRM 465 >gi|218528728|ref|YP_002419544.1| flagellar hook-associated protein FlgK [Methylobacterium chloromethanicum CM4] gi|218521031|gb|ACK81616.1| flagellar hook-associated protein FlgK [Methylobacterium chloromethanicum CM4] Length = 487 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 7/487 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ S Q A RN+ A++ Y R+ VT Sbjct: 1 MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + L + D +P ++ + +L++ + Sbjct: 61 PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + +++A+ + + + +A + RA+AD I +S + L N A+ Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LD RD +L +S+ IG+ + R DM +YT G TLFE PR + F Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + IDGV V+ + G+I L+ +RD ++ QLD +A LI Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354 +F+E D + +S LF A G L + IS V+P + + LR G Sbjct: 301 AFAESDAVGFDSGPRAALFTAGGSGTLPTAAGRTGLAASISVNAAVDPARGGSVALLRSG 360 Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + + DP G+ T+ L + A +S GWLE Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPALGLGTSAGLPDLAASSAGWLEA 420 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R D+ + + +E+ SN GVN +E + +++E+SY+ S KLI + +L+ Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISIVNDLLK 480 Query: 474 TLLEGVK 480 TLL+ V+ Sbjct: 481 TLLDAVR 487 >gi|28900128|ref|NP_799783.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365778|ref|ZP_05778274.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] gi|260880700|ref|ZP_05893055.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|260897694|ref|ZP_05906190.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|28808411|dbj|BAC61616.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086274|gb|EFO35969.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|308092694|gb|EFO42389.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|308114946|gb|EFO52486.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] Length = 457 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 68/481 (14%), Positives = 153/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57 N A + N +N+ N + Y R+ + S V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + + D + + +++ +S + VN I Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALTHANSLMSNIAHVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D R+ L+ ++S++I + T + + M V G L Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTEVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + G + + D L Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G +++ D NK +V+L + + +G Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|92114092|ref|YP_574020.1| flagellar hook-associated protein [Chromohalobacter salexigens DSM 3043] gi|91797182|gb|ABE59321.1| Flagellar hook-associated protein [Chromohalobacter salexigens DSM 3043] Length = 539 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 71/539 (13%), Positives = 172/539 (31%), Gaps = 67/539 (12%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSE 58 ++F+ + + A ++ N+ N + Y R+ T+ + V+V + + Sbjct: 2 SIFSIGLSGLSAAQSALSTTSNNLSNVYTEGYNRQLTILGESYSNGSTGTGVSVDEVQRQ 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + +S QS + + + AD + + SL+ + Sbjct: 62 FNSYVTEQYNDANSQKSALESYQSQVSQIDDLLAD--SDAGLAPLVQDFFSSLDDLTGAA 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S+ + V+ +A + F + + +R+ + ++E ++++ +++ +ND I Sbjct: 120 SDPAARQGVLGSASSMAAQFRSFDSYLGDMRSSLNGQLESTVTDINNTATQIAKLNDQIT 179 Query: 179 FKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A S + + LD+RD L+ ++E++G +++ + + +G L Sbjct: 180 QARAKSGEEPNSLLDKRDKLVSDLNELVGADLNIQDGDTYNINLENGQPLVSGTQSYDLE 239 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 ++ + V+ SA G++ LL R + QNQL M VL Sbjct: 240 AVESNEDPSRTVIAYRDAAGNVNQIDDSAFENGELGGLLSFRSETLDSVQNQLGRMTVVL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ------------------------- 332 F+ + G + Q Sbjct: 300 GSEFNAVHENGVDLNGDAGEAFFEIGSPRVMSNSQNDGDGAISAEYSDVNQLTSSDYRIT 359 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD--- 389 + + L GS N++G + + + Sbjct: 360 YTGGEYQAERLSDGDTTTLTPDGSGDVDLDGMTLNISGTAQEGDTFMLQPTRTASQGFEV 419 Query: 390 ------------------------------PVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + + + + + + Sbjct: 420 AITEGAEIAAASSGGGSGNNENALDLLDLQSEKMVGGTSSISDAYASLVNEVGNTTNITQ 479 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + E + GVNL EE + L++ +Q Y + ++I ++L ++L+ Sbjct: 480 VNLDAQSGLTEQLREYQQSESGVNLDEEYANLVRYQQYYQANARVIDVGSQVLDSVLQL 538 >gi|328958295|ref|YP_004375681.1| flagellar hook-associated protein FlgK [Carnobacterium sp. 17-4] gi|328674619|gb|AEB30665.1| flagellar hook-associated protein FlgK [Carnobacterium sp. 17-4] Length = 472 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 69/489 (14%), Positives = 160/489 (32%), Gaps = 33/489 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPE 48 MS L N A N + NI NA+ Y R+ Sbjct: 1 MSGLFGTLNNATKGLNVQQAALQTTSHNISNANTVGYSRQKVTMVADNPYTLGGIGQLGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + +K L +S++ E + ++ + +SK+ Sbjct: 61 GVRISSIDRIVDPYVNKQLRNENSSLEMYGKKSDILGQLEGIF-NEPSTTGLNNNLSKVF 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 S N V N+E + ++++ + ++IE + + + Sbjct: 120 SSWTYLGSNPELATAKTMVAQNSETFTDTLHHMSKQIDSLHEGTVQDIEKNVLDFNAKVE 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N I T+ +D LDQ+D +L +++ I G+ N + + + L Sbjct: 180 QLDSLNKQIFNMTSQGQAPNDLLDQQDKILSELTGIAGVEASYDKFNRVSITVGGESVLT 239 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 E ++ + DG +V + A+ G IK + + + Sbjct: 240 EDSISKMSVAPDS-------------DGQLVVNETNIAITSGNIKGSQEALTE-IDTKKQ 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +L+++A + +E G G+ + D +++ I + + Sbjct: 286 ELNDIAFTFATAMNEVHSDGG-----AGIPFFTLGEGGDYAASIQVNKEILDDVSKINAG 340 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + D + + + + T+ +S+ Sbjct: 341 KDINDV-VGGDGTRAQAIAALQNTKFGDPVDIKGDYDPDTMTIKNKEGGSTVAGSYNDSV 399 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + S ++ + + + + GV++ EE++ I + ++ ++++I Sbjct: 400 TQMGIVKQQSDNMVDSQGSLVSLLEARRDSVSGVSINEEVTNTIAYQSAFEANSRIISVV 459 Query: 469 DKMLQTLLE 477 +ML TL+ Sbjct: 460 SEMLDTLIN 468 >gi|156976147|ref|YP_001447053.1| flagellar hook-associated protein [Vibrio harveyi ATCC BAA-1116] gi|156527741|gb|ABU72826.1| hypothetical protein VIBHAR_04918 [Vibrio harveyi ATCC BAA-1116] Length = 457 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 71/481 (14%), Positives = 150/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57 N A + N +N+ N Y R+ + T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANIITPGYSRQQALMTSVGDGKYNKLSPGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S + + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYSAGYTTAMSQIENTLG--ADGFSVSAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +S+ ++ + VN I Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RDVL+ ++S+I+ I T + + M V + G L Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLA 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 K + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AKPDPSDPYLADLSVEFASQSFVID---HSVGGKLGAINDYQTEVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + L Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G D++N NK +++L + +G Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|153837083|ref|ZP_01989750.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] gi|149749671|gb|EDM60416.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] Length = 457 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 68/481 (14%), Positives = 152/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57 N A + N +N+ N + Y R+ + S V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + + D + + + + +S + VN I Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALIHANSLMSNIAHVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D R+ L+ ++S++I + T + + M V G L Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + G + + D L Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G +++ D NK +V+L + + +G Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|290474980|ref|YP_003467864.1| flagellar hook-filament junction protein 1 [Xenorhabdus bovienii SS-2004] gi|289174297|emb|CBJ81087.1| flagellar biosynthesis; hook-filament junction protein 1 [Xenorhabdus bovienii SS-2004] Length = 546 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 80/548 (14%), Positives = 174/548 (31%), Gaps = 73/548 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS ++ N A + N A + NI N+ N Y R+ T+ T + V Sbjct: 1 MS-NSLMNTAMSGINAAQVAMGVVGNNIANSKNVGYNRQTTVLTQNNGTLSPAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + E ++ + + + AD + S ++ I + S Sbjct: 60 AVSSINREYSEFINQQHSSAQTKHAALTAYNQQITKINDLLAD--KDTSLSNSIEEFFKS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + N + TV+ AE +V F + +++I + +IE + ++ E+ Sbjct: 118 LGAAESNAEDSAARTTVLGKAEGLVSRFKEADEFLRQIDNSINSQIEQNAREINKYAEEV 177 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N+ I + + LD+RD + K+++++ ++ ++ V G +L Sbjct: 178 ATLNNEITRMRGTGTGEPLALLDKRDEAVNKLNQLVDVNVTQQDGGVYNVSFGGGMSLVS 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S + + V + +G + LQ+R VV +NQ Sbjct: 238 GSKSYRLEAISSSTDSSRITLGYNNGTVGTKEIDERFISQGTLGGALQVRREVVDSSRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---------------I 334 L+++A V+ F++ + + PG+ + K + Sbjct: 298 LNQLALVMADQFNQVQNGGFDLKGKPGVDFFNFTKPDVISNSNNKGTADIKVEYADTTKV 357 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP---------------------- 372 + + R + N L Sbjct: 358 KNSDYTLKYEGGDWKVQRVSDKAAVPVTKNGNALEFDGLKVEIDAAHSQDHDTYTLKTVS 417 Query: 373 ----DLINHYCDSFNKNFIFDPVAG------------------INTNVTLLEYARNSIGW 410 L + DS D AG I+ + + + Sbjct: 418 NVVATLEVNLQDSSQLATAGDKDAGPSDNRNAKKFLALQDQRLIDGKSSFAGAYASLVSQ 477 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + +++ + + + + + GVN+ EE + +++Q Y + ++I Sbjct: 478 VGSKANEAQVSVETQGHIVDKLYATRESISGVNMDEEYGAMQRLQQYYLANARVIQTAAT 537 Query: 471 MLQTLLEG 478 + +L Sbjct: 538 LFDAILGI 545 >gi|319406995|emb|CBI80632.1| Flagellar hook-associated protein FlgK [Bartonella sp. 1-1C] Length = 456 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 113/481 (23%), Positives = 218/481 (45%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N A+N + + ++ RN+ A + NY RR + P V R ++ Sbjct: 1 MSLNLALNSARNSLKATTGRLDTVSRNVVKAGDPNYTRRTSYLEAGPGGAVHVVVRRDSD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S L + + D ++NSP+ + + + +L+ Y+ + + Sbjct: 61 IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGSDRFSNSPSKLLGEFQKALQLYANDPQQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G +D A ++ + N +RE++K+ D + +I+ + + L + ++ + + Sbjct: 121 RSNGDAAVDRARDLAKGLNAGSREIEKLYNDVNSDIQDSVDYINDLLQKFHELDQLVVRE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 ++ D ++DQRD +L+++S+ IGI+T+ ++ M +Y DG+TL++ +PR ++F+ Sbjct: 181 RNARRDDSVYMDQRDAVLKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S IFIDGV + + G + LL++RD ++P +Q QLDEMA L+ Sbjct: 241 TSLPSGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLKLRDDIIPQYQRQLDEMANALMQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F + + G A R + Sbjct: 301 MFLGPPSLFLDGNQPSGQIGALEGLAG-------------------------RIQLNPIF 335 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + D + DSFN+ F G++ +++++ +NS+GWL+ RS++ Sbjct: 336 DSKTEGGGPEHFGDKLQELVDSFNEKQKFGTGTGLDPEQSIMDFGKNSVGWLQGLRSNAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F H +E+ SN GVN +EL+ ++++EQ+Y ++++I KML LL V Sbjct: 396 KEARYKGTMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|163803175|ref|ZP_02197058.1| putative flagellar hook-associated protein [Vibrio sp. AND4] gi|159173075|gb|EDP57908.1| putative flagellar hook-associated protein [Vibrio sp. AND4] Length = 457 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 69/481 (14%), Positives = 149/481 (30%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57 N A + N +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGDGKYNKLSPGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYSAGYVTAMDQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +++ +E + + FNT + D + +S+ ++ + VN I Sbjct: 123 PESIPYRQQIVNESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RD+L+ ++S+I+ I T +++ M V S G L Sbjct: 183 VEMQGTGGNPAQLMDTRDLLIGELSQIVEIKTTDQSDGSMQVTLSSGQPLVMGGDYGQLT 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 K N + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AKPNPSDPYLADLSVDFASQSFIID---HSVGGKLGAINDYQTQVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + G + L Sbjct: 300 ADEYNAVLATGQDLNGNSGKPLFSYDPANPAAS--------------------LTITNIG 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G D++N NK +++L + +G Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPISV----TGYGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|254227989|ref|ZP_04921419.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|151939485|gb|EDN58313.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 457 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 144/481 (29%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N A + +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + D + +++ + + VN + Sbjct: 123 RESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+ I I T + + + V + G L Sbjct: 183 VEMQGTGGNPSQLMDERDKLIGELSQTIEIRTTEQPDGSVQVTLTSGQPLVMGTDHGKLA 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q L++MA+ L Sbjct: 243 AVPDPSDPYVADLHVTFSSQSFAIGDS---LGGKLGAINDYQTDVLKPNQLALNDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + PG + L Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LDITELT 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ G D++ + NK + +L + + +G Sbjct: 340 PGELAFSSDGTPGNADVLQSLINLSNKPVSVTGYGFV----SLNDAFSSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|260899395|ref|ZP_05907790.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] gi|308109296|gb|EFO46836.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] Length = 457 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 68/481 (14%), Positives = 153/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57 N A + N +N+ N + Y R+ + S V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + + D + + +++ +S + VN I Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALTHANSLMSNIAHVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D R+ L+ ++S++I + T + + M V G L Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + G + + D L Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G +++ D NK +V+L + + +G Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|260767929|ref|ZP_05876863.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|260615959|gb|EEX41144.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|315179632|gb|ADT86546.1| flagellar hook-associated protein [Vibrio furnissii NCTC 11218] Length = 457 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 66/481 (13%), Positives = 152/481 (31%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57 N A + N +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGGAKYDNLSAGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + S S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTGSVASYASRYTSSMSYLENTLG--ADGFSLSAGLDNLFAALHDATSK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 L + +I+ AE + + FNT + D + + ++ ++ + VN I Sbjct: 123 PESVPLRQQIINEAEALSRRFNTLTESMYNQHKDMNDQRTAAVAQANSVMANIAEVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D RD L+ ++++I+ + T + + M V + G L Sbjct: 183 VELKGTGGNPAQLMDTRDALVGELAKIVEVKTTDQADGSMQVTLTSGQPLVMGSEHGTLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G++ A+ + + V+ + L++MA+ + Sbjct: 243 AIPDPSDAYLATMQVEFGKQSFAIPGD---LGGELGAINEYQTDVLKPYMTALNDMAQSM 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 SF+ + + + +PG + S L Sbjct: 300 ADSFNTELALGLDLNGLPGKALFSYDPANP--------------------SSSLTITDIT 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + G D + N+ F +++L + +G + Sbjct: 340 PNELALSGDGNPGNSDNLTALIAISNQAFSISGF----GSLSLNDAFTGMVGEVAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADSDYQAKNSMNEQAVAARDNISAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|110677962|ref|YP_680969.1| flagellar hook-associated protein FlgK [Roseobacter denitrificans OCh 114] gi|109454078|gb|ABG30283.1| flagellar hook-associated protein FlgK [Roseobacter denitrificans OCh 114] Length = 481 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 96/486 (19%), Positives = 180/486 (37%), Gaps = 17/486 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MS+ + A A + I N+ NA Y R+ + S V + Sbjct: 1 MSISGALSNAMTGLRAAGRTSEVISANLANAMTPGYGVRNLSLSSSQLGGVAIDGVMRNV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L ++ G F E + NS +++ +L + + Sbjct: 61 DPSLLADLRLADASFGNANNRTKFLNDFENLLGTPEEANSLAGRMAEFERTLITAASRPD 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 +V+D A ++ + ++ VQ+ R+DAD+ I+++I L L + +N I Sbjct: 121 APERLNSVVDAARDIATLISKASDGVQQARSDADRAIQVQIDRLNTSLQSVKELNSQITR 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ DA D R ++ +I+ I+ + + R+N + +Y++ G L + +I F Sbjct: 181 TISTGSDASALFDNRQAIVDEINAIVPVRLVPRDNGQIALYSTGGAILIDGGVAEIEFNA 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293 +N T + G+ V+ G + A +IRD + Q QLD Sbjct: 241 VNQVTPFMTLGGGTLSGLSVNGYPVRTDSARGALGGGTLGAHFEIRDELGTSAQTQLDAF 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIAD---GIKDLDNKLCQGISETICVNPQYRSNPSF 350 AR LI F + A + PG+F + L +S V+ + Sbjct: 301 ARDLIERFQDPAVDASLAVGDPGIFTDAGLAFDPVNEIGLSARLSVNAAVDERQGGESWR 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 +RD G LI D+ + + + Sbjct: 361 IRD------GVNALTPGDVGDARLIQALSDTLSAKRAPASGDFGAGAFSAMNLISTFTSQ 414 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + +RS + + F+ +++ GV+ +EL L+ VEQ+Y + ++I D+ Sbjct: 415 VGADRSRAEQTLSFASSQFDELTQQVLAN-GVDSDQELQRLLIVEQAYAANARMIEAADE 473 Query: 471 MLQTLL 476 M+QT+L Sbjct: 474 MMQTIL 479 >gi|126697802|ref|YP_001086699.1| putative flagellar hook-associated protein [Clostridium difficile 630] gi|115249239|emb|CAJ67052.1| Flagellar hook-associated protein FlgK (or HAP1) [Clostridium difficile] Length = 436 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 172/495 (34%), Gaps = 79/495 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++ N A + N + +I NI N D Y R+ T + Sbjct: 3 GLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + +D A + G + E + ++ + + I Sbjct: 63 QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETIL-NEPSDYGISAGI 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 ES SK+++ D V++NA + + S +++ K++ D D I+ EI + Sbjct: 122 DDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L L +N +I + S +D LD+RD +L +S + + N Sbjct: 182 DMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSD------ 235 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + ++ + + G ++ L ++ + Sbjct: 236 -------------------------GKLELNELKNADGTWKTGISGTLQGLFEMH-GKID 269 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ L +++ L ++ + ++D + I VNP Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNSSAGIT----------VRDFFITSNVAGEDIIKVNPAI 319 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +SN + L+ + K + K+ D T+ ++ Sbjct: 320 KSNSNELKLTTEEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + + + + N++ S + GV+L EE++ L+KV++SY S K+ Sbjct: 361 KAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSLDEEMTELMKVQRSYQASAKV 420 Query: 465 IMFTDKMLQTLLEGV 479 + ++L ++ G+ Sbjct: 421 MSTAVQLLDVVINGI 435 >gi|157147096|ref|YP_001454415.1| flagellar hook-associated protein FlgK [Citrobacter koseri ATCC BAA-895] gi|157084301|gb|ABV13979.1| hypothetical protein CKO_02873 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 67/488 (13%), Positives = 148/488 (30%), Gaps = 38/488 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS+ N A + A NI N Y R+ + + + V Sbjct: 1 MSM---INIAFSGLQAAQVGMNVTSMNIANLLTPGYSRQGIIQSSIGPMGEAGFTAGNGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + R + + +S + E + D + S + + + Sbjct: 58 QVDSIRRISSQYLVNQVWQTNSKASYFETGNQYIGALEQVIGTD--STSLGNGLDDFVSA 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + ++ L + +I+ A + FN + + + + + + + + Sbjct: 116 LSALTQTPESPALRQQLINQAGALATRFNNVNNFISSQKESINTQRNAMVDQINTLSTSI 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 N I ++ ++ DQRD L++++S + + ++ V ++G L Sbjct: 176 ADYNKKITDMESTGGNSSVLRDQRDELVKQLSTLADVKVTDDGSSGYTVSMANGQPLVSG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ N S + G++ AL + ++ + Sbjct: 236 KVAGQLSAGQDA-----NGNSTLTLKFSTSEFTLNPSAGGQLGALYDYETGTLQQMKDSV 290 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 MA + F+++ + G + + Q Sbjct: 291 QGMAESVAKLFNDQLAKGYDLNGNSGKPLFTFDPSNPAGMLQVT--------------DL 336 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + ++S + + G D + + N+ + N++L E A I Sbjct: 337 KPEELALSGIQADDGTGVPGNGDNLKALIELKNQKTDIPGL----GNMSLSEGAAAIIST 392 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S + V + N VN EE L Q+Y + K+I ++ Sbjct: 393 IGIASKQSKTEMEAASTVRDQAQNQRDNLSAVNQDEEAINLQIYMQAYQSNMKVISTGNQ 452 Query: 471 MLQTLLEG 478 + LL Sbjct: 453 IFSDLLGM 460 >gi|91794989|ref|YP_564640.1| flagellar hook-associated protein [Shewanella denitrificans OS217] gi|91716991|gb|ABE56917.1| Flagellar hook-associated protein [Shewanella denitrificans OS217] Length = 457 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 68/481 (14%), Positives = 157/481 (32%), Gaps = 33/481 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-------VTQRS 57 + N ++ ++ + N+ NA Y R+ MT+ R Sbjct: 2 NMLNIGKSGLLASAASLNATSNNVANAMVAGYSRQQVMTSSVGGGAYGGGAGVYVDGVRR 61 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + L +S +G ++ S+ E + N + + + ++ S + Sbjct: 62 ISDQYEVAQLWKTNSDVGFSKIQTSYLGQAEQVFG--ADGNDISKGLGLVFAAMNSAMEQ 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + +I+ + +VQ ++ + R + ++ + + L ++ N I Sbjct: 120 PNLIAHRQGIINETKALVQRVHSINESLSSQREQINGQLGSSVKLVNTQLDIISKFNKDI 179 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + +A D RD + +++ +I I + + + G L + Sbjct: 180 RAASAIGTVPAALQDGRDAAINELASLIDIRVVEDAQGLVNISLEKGEPLIAGNTKATLS 239 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + I S G + +L+ RD+ + Q +DE+A+ L Sbjct: 240 TVPDPLNPANSNISIQF---GKSQFVFENSVGGSMGSLMTYRDTQLANSQTYIDELAQHL 296 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + + + + ++ IS Sbjct: 297 ANEFNNTLALGTDLSGAAPVKNFLSVNSVNPAGSLAISSGFTPEDLALG----------- 345 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + G + +K+ F + V+L E + +G L Sbjct: 346 -------LDGTQGDNSNLKALAALASKSLGF---TSLGGAVSLGESFSSIVGALGSASRQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + +++T GVN EE LI +Q+Y + K+I +++ QT+L Sbjct: 396 AKADAKTNTDLHTEAKSQWASTSGVNPDEEGVNLIVYQQAYQANAKVITTAERLFQTVLN 455 Query: 478 G 478 Sbjct: 456 S 456 >gi|319403979|emb|CBI77567.1| Flagellar hook-associated protein FlgK [Bartonella rochalimae ATCC BAA-1498] Length = 456 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 113/481 (23%), Positives = 216/481 (44%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N A+N + + ++ RN+ A + NY RR + P V R + Sbjct: 1 MSLNLALNSARNSLKATTGRLDTVSRNVVKAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S L + + D ++NSP+ + + + +L+ Y+ + + Sbjct: 61 IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGSDRFSNSPSKLLGEFQKALQLYANDPQQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G +D A ++ + N +RE++K D + +I+ + + L + ++ + + Sbjct: 121 RSNGDAAVDRARDLAKGLNAGSREIEKSYNDVNSDIQDSVDYINDLLQKFHELDQLVARE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + D ++DQRD +L+++S+ IGI+T+ ++ M +Y DG+TL++ +PR ++F+ Sbjct: 181 RNANRDDSVYMDQRDAILKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S IFIDGV + + G + LL++RD ++P +Q QLDE+A L+ Sbjct: 241 TSLPSGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLKLRDDIIPQYQKQLDEIANALMQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F + + E G A R + Sbjct: 301 MFPGPPSLFLDGEQPSGQIGALEGLAG-------------------------RIQLNPIF 335 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + D + DSFN+ F G++ +++++ +NS+GWL+ RS++ Sbjct: 336 DSKTEGGGPEHFGDKLQELVDSFNEKQKFGTGTGLDLEQSIMDFGKNSVGWLQGLRSNAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F H +E+ SN GVN +EL+ ++++EQ+Y ++++I KML LL V Sbjct: 396 KEARYKGTMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|188579926|ref|YP_001923371.1| flagellar hook-associated protein FlgK [Methylobacterium populi BJ001] gi|179343424|gb|ACB78836.1| flagellar hook-associated protein FlgK [Methylobacterium populi BJ001] Length = 489 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 128/489 (26%), Positives = 206/489 (42%), Gaps = 9/489 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L N A+ S Q A RN+ A++ Y R+ VT Sbjct: 1 MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSAGGATVTITRAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + L + D ++P +S + +L++ + Sbjct: 61 PALYARTLTASSDAARGDALLTGLTKLAQTIGDTDDTSAPAARLSIFQAALQAAANQPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + ++ A+ + + N +A V +RA+AD I + + L N A+ Sbjct: 121 TQLARDAVEAAKALAGSLNQAADTVHAVRAEADAGIGDAVGRINDLLGRFDAANRAVVKA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA DA D LD RD +L +S+ IG++ + R DM +YT G TLFE PR + F Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGLTAVSREGGDMALYTDGGVTLFERGPRTVAFSPT 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++T + + IDGV V+ + + G+I L +RD ++ QLD +A LI Sbjct: 241 ATFTAGTVGGSVTIDGVPVTGTASPMPLTSGRIAGLAALRDGTAVAYEAQLDAVAGGLIA 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL-------CQGISETICVNPQYRSNPSFLR 352 +F+E D + GLF A G L ++ V+P N + LR Sbjct: 301 AFAESDTSLIDDGPRAGLFTAGGSALLPTASAAGRTGLAASLAINAAVDPNRGGNLALLR 360 Query: 353 DGGSVSKKFLW-NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 GG + A Y + + + + DP G+ T +L E A S GWL Sbjct: 361 SGGMNGSDYDDPAAGGDAAYAGRLRGLVTALSSSKPVDPALGLGTASSLPELAAASAGWL 420 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E R D+ + + +E+ SN GVN +E + +++E+SY+ S KLI + + Sbjct: 421 EAQRKDAATGAAYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLIAVVNDL 480 Query: 472 LQTLLEGVK 480 L+TLL+ V+ Sbjct: 481 LKTLLDAVR 489 >gi|168333624|ref|ZP_02691884.1| flagellar hook-associated protein FlgK [Epulopiscium sp. 'N.t. morphotype B'] Length = 544 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 79/540 (14%), Positives = 161/540 (29%), Gaps = 65/540 (12%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTV 52 A + A Q + NI N + Y R++ TV Sbjct: 3 FGEITVAMSGLFAAQQGLSVTSSNINNINTPGYSRQEIKQEAWNPLPGGGVGMIGTGTTV 62 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 D+ + +S +G+ + Q A+ E + + + T + + L+ Sbjct: 63 TGVERVRDPFLDQKIWKYSDMLGEYSIKQEQTAIIENIFG-EPKDEGFTKIYTNFFNGLD 121 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 SK+ + + +N A + + ++D + ++++ + + S + Sbjct: 122 DLSKDPNTTEKASALRQYMIGFADYYNEMASGLSETQSDINAQLKITVDQINLMASRVQS 181 Query: 173 VNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-------DG 224 +N I+ A++ DQRD + ++S+ + I + +G Sbjct: 182 LNGQIQNYELHGGKIANELRDQRDHCVDQLSQFVNIEAKEVEMHKPDGSVEKQFQVYVNG 241 Query: 225 TTLFETVP-RDINFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDS 281 TL + R + E + + + ++ + N S GK+K LL +RD Sbjct: 242 QTLVDHKDIRLLEVEPRETKKHPRDIDGLYDIVWDDKAVFNTTSEYFSGKLKGLLDVRDG 301 Query: 282 ---------------VVPIFQNQLDEMARVLIGSFSEKDPIA------------GNSENV 314 +P FQ++LD R + + Sbjct: 302 QGAGLDPITHKPVYTGIPYFQDRLDRFVRDFSKELNRIYNQGDIIDANGNREQILDDLGN 361 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN---------- 364 P + + + + N N S + K N Sbjct: 362 PVYALFSYRDEDTSAIIASNDPNFDYNKMTAENFSTSLEIIESDKNIRTNYEHRMDVIND 421 Query: 365 -----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N Y + D + + T +Y + + N S++ Sbjct: 422 PKLDPPYNSEIYYNPNPGNNDLLLDLMDQQNNQDVFSQGTPTDYMISIFSAMGVNASEAQ 481 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + I GV+ EE LIK +Y IS K++ D + + + Sbjct: 482 MYAKTQSNIISEIENQRMAVSGVDNNEEFMNLIKYNMAYQISAKVMSTLDNIYDITINRM 541 >gi|284041493|ref|YP_003391833.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM 14684] gi|283945714|gb|ADB48458.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM 14684] Length = 443 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 65/500 (13%), Positives = 144/500 (28%), Gaps = 91/500 (18%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + Q + N+ NA+ + R++ + Sbjct: 4 SSFMGLQTSLRGLIAHQQALNTTGHNVANANTPGFSRQEAIFGAMSALRLPTNSGTTGLG 63 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V+ R + D + +G E+ + ++ Sbjct: 64 AQLGTGVDVLGIRRIRDSFLDLQFRGTNMQLGDASARTQSLEQVELSFG-EPSSSGINAL 122 Query: 104 ISKLRDSLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD---KEIELE 159 + + D+ + + VI+ A + F T ++ ++ A A EI Sbjct: 123 LGRFWDAWSALASAPEEGSAARTAVIEMANTLAGAFQTVHAQLTRVAAQAQGKYDEITGP 182 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + EL +N I +D +D+RD+L+ ++SE+ +S + + V Sbjct: 183 AGDVDIWAQELAQLNRTIAHAVTVGQVPNDLMDRRDLLIDRLSELSQVSVTDVGDGSVRV 242 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 G TL + + Q GK+ AL + Sbjct: 243 -EFGGVTLVDPAAA-----------------------GGYTWPQTLTSRDGKLGALRDLA 278 Query: 280 DSVVP--IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 P F+++LD +A L+ + G + Sbjct: 279 SPTGPALSFRDRLDTVAADLVARVNALHRAPGGVDFFAP--------------------- 317 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + ++ + + N Sbjct: 318 ---------------------AGTTADRISVVATAATVVAGSTADRGRNDVANAIAQLRN 356 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 ++ + + + Q + ++I + + GV+ EE++ +I+ ++ Sbjct: 357 GSINRTYSALVSEVGSVVRRASSAEAIQQSLVDNIDDRRQSVQGVSPDEEMTNMIRFQRG 416 Query: 458 YNISNKLIMFTDKMLQTLLE 477 Y S + + D+ML TL+ Sbjct: 417 YQASARTMSTLDEMLDTLIN 436 >gi|326792656|ref|YP_004310477.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] gi|326543420|gb|ADZ85279.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] Length = 559 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 86/560 (15%), Positives = 186/560 (33%), Gaps = 82/560 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------I 45 MS ++ KA + A + N+ N + + Y R+ + + Sbjct: 1 MSSISSITKAVSGLAAAQKGLQVTGHNLSNVNTEGYTRQQLLQSESDYLVIGNRGSRYLQ 60 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 VT R + DK L +S + + S A E + D+ Y T ++ Sbjct: 61 VGLGVTQDEIRQIRNELADKRLRTENSVLTYYQTQNSTIAEIEAIL-DEPYGEGVTKLLN 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + ++ I A +++ N + + K +A+ +KE+ ++ + + Sbjct: 120 NFWSQTQKLNTTPNGVEERQSFISAANVLIKKINDISDSLDKFQANTNKEVISSVNRINQ 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + + ND I + +A+D+ DQR+ LL ++SE ++ + +VV + Sbjct: 180 IIEGIKEYNDIISRAEVNGDNANDYRDQRNNLLDELSEYGKVTYHEEVGSKVVVKFENHL 239 Query: 226 TLFETVPRDINFEKMNSYT----VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + + E+ ++ + + + GK+KALL R + Sbjct: 240 VVDGPFTATMKLEEADTKSVFVKPVWSDTNSDVYRFDETVTSVKGNDTGKLKALLISRGN 299 Query: 282 ---------------------------VVPIFQNQLDEMARVLIGSFSEKDPIA--GNSE 312 ++P Q L + VL+ + + G+ E Sbjct: 300 NYVTEDTKWEDIAFNDNFSVDEPGNSFIIPKIQKMLSDFTGVLVETVNSCFDGTGIGSHE 359 Query: 313 NVPGLFIADGIKDL---------------DNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 G+ + I D + E + +N + V Sbjct: 360 GKAGVPVFVPIISTQEYEAAKKNLETVLNDPTSTEDQKEAAQQAYEKAANKAMTTGNIQV 419 Query: 358 SKKFLWNV-------------KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-----VT 399 + + L N N G + + + K + V+ Sbjct: 420 NPELLANGGYNKLGTVSTEGASNNVGDSSKVTEFLSEWGKTREWYSDRSEKGAPNYKKVS 479 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 ++ + + + + S+ + Q +I GV+ EE + ++K + +YN Sbjct: 480 IISFYSEFVTDIGTDGSNYSAVAKSRQTSILNIQNERQAMGGVSQDEEFANMLKYQYAYN 539 Query: 460 ISNKLIMFTDKMLQTLLEGV 479 S ++I D ML T++ + Sbjct: 540 ASARMITMLDGMLDTIINKM 559 >gi|114762176|ref|ZP_01441644.1| flagellar hook-associated protein K [Pelagibaca bermudensis HTCC2601] gi|114545200|gb|EAU48203.1| flagellar hook-associated protein K [Roseovarius sp. HTCC2601] Length = 486 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 184/491 (37%), Gaps = 18/491 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56 MSL + A + S+ + NI NA ++Y RR + + V + Sbjct: 1 MSLSGALSNALSGLTANSRSAGLVASNIANATTESYGRRTLDLSARTLGNSGGVWIDGVT 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + G +QSF + E + S + +L S + Sbjct: 61 RNVDPAVLADRRLSDAQSGFADEMQSFASRVETLLGPTDTAGSLVGRYAAFETALLSAAT 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + D K V AE+ N + E+Q R DAD+ I +++ L ++ +N A Sbjct: 121 DPASDQRLKLVAQRAEDFTTMLNQISVEIQDARTDADRSIGSQVTRFNTALGRVSELNTA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET----VP 232 I D +DQR ++ +S+I+ + ++ R N + +Y + GT L + P Sbjct: 181 ISDSLLRGGDPASLMDQRQRVIDDVSDIVPLRSVARENGAVALYAASGTVLLDPDFHSDP 240 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +I+F + T + + ++G V+S+ A+ G + A QIRD V P Q Sbjct: 241 VEISFTPQDPVTADLSIGAGTLSGLEVNGKAVNSSNDGALGGGTLGAQFQIRDIVAPDMQ 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +D +AR LI F+ P + PGLF G + + Sbjct: 301 AAIDGIARDLIERFAPGGPDSTLGATDPGLFTDAGTAFDPLDETGLAGRIALNSLVDPAG 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 R V+ G L+ Y D+ + A + + ++ + Sbjct: 361 SGTWRLR----DGLGAAVQGPVGEARLLRGYSDALDALMSPGSAALGSGAQSFAQHVADF 416 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + R + S + E + GV+ EL L+++EQ Y + ++I Sbjct: 417 HAAIAAARLRADGEQSFSSAQNTALKELELSK-GVDTDAELQELLRIEQHYAANARVITT 475 Query: 468 TDKMLQTLLEG 478 D+++QTL+ Sbjct: 476 VDELMQTLMNI 486 >gi|307318930|ref|ZP_07598361.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti AK83] gi|306895344|gb|EFN26099.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti AK83] Length = 472 Score = 196 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 244/481 (50%), Gaps = 10/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ + +QQ A++ +NI N+ N +Y RR M +P VV+ Sbjct: 1 MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQVVSIYRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K S Q L S + + + Y +SP+ Y+S R+SL++++ Sbjct: 61 EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + TV+ +A ++ + + ++ VQ +R D+DK+I E++NL R L++ N+A++ Sbjct: 121 ATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVRQA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ DA LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++Y T N IFIDGV ++ G +GK+ LLQ+RD + P FQ+QLDEMAR L+ Sbjct: 241 SAYDATVTGNGIFIDGVPLAPGSGADTNAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F E + ++ + + Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N AGY L++ + + + + FD G++ +++E+A +SIGW E+ RS + Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ + GV++ EELS L+ +EQSY S KLI D M+ +LLE V Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471 Query: 480 K 480 + Sbjct: 472 R 472 >gi|95929883|ref|ZP_01312624.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM 684] gi|95134179|gb|EAT15837.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM 684] Length = 552 Score = 196 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 80/558 (14%), Positives = 181/558 (32%), Gaps = 86/558 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M L A N + + + NI N + + Y R++ + V Sbjct: 1 MGLAAALNTGKTSLFASQKSIEVAGNNIANVNTEGYSRQNVVLGDIPSLEFGGFFVGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E ++ L S +G + + A E + + N I + D+ Sbjct: 61 RVNNIEREYDVFINQQLLDKSQELGTEDAKSTPLAELERVFSVGDEN--LATEIDRFFDA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S N S ++ VI E + +FN+ AR++ +R++ + + EI ++ L+++ Sbjct: 119 WQELSTNPSGEVERDIVIQRGELLASSFNSLARDLDNVRSNINDTVASEIDDVNLKLNQI 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I+ A+ A+ F DQRD+LLQ+++ +G+ + N + + G L + Sbjct: 179 AELNTQIQNIEANGKSANSFRDQRDLLLQELTYTLGVQSYEEPNGAINIQLPGGLPLVQN 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +T + ++ S GK L ++RD +P + L Sbjct: 239 GTALQLEATPRGEDLT-----LTLNIGESSFEVKGDNLGGKFNGLFELRDEFIPELKQNL 293 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY------ 344 D A ++ + + + G+ + + + + + Sbjct: 294 DLTAYEMVQTVNSLHAQGVGLDGSTGVAFFNNPGNHTTQSYVDPDQATAFSAGDLSIEVD 353 Query: 345 ---------RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + L D + + + N + + + + + Sbjct: 354 GVANTVAFAGGSLNDLADTINTAALGVTATVNEQDDGTFVMVLRPDNAGDSVQLDTSAVG 413 Query: 396 TN-----------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVV---------------- 428 + L+ + + S + + + + Sbjct: 414 GSYEAPEFSMPNISDLIAVSIRDTSKVAAGNSSAPGDNTNALAISALKDEDTINGEDTFV 473 Query: 429 ---------------------------FNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + +VGV+++EE+ LIK ++ + S Sbjct: 474 SFYGKMAASVGIEAGQNRLAQSGAEDSLTQLKNLRDGSVGVSIEEEMISLIKFQRGFEAS 533 Query: 462 NKLIMFTDKMLQTLLEGV 479 KL+ D+++ T++ Sbjct: 534 AKLLSTVDELMVTVINIK 551 >gi|310644334|ref|YP_003949093.1| flagellar hook-associated protein flgk [Paenibacillus polymyxa SC2] gi|309249285|gb|ADO58852.1| Flagellar hook-associated protein FlgK [Paenibacillus polymyxa SC2] Length = 522 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 66/519 (12%), Positives = 156/519 (30%), Gaps = 47/519 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ + + NI NA+ + Y R+ Sbjct: 3 STFHSIETAKRSLFTQTAALNTTGHNIANANTEGYTRQTVKMKASIPMEAYGINRSNVPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D ++ +G + + + + ++ + + Sbjct: 63 QLGTGVEFDAIERIREKFLDSQYRGENTELGSWTIRSNTLDKLQQIM-NEPSDTGIRKVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S SK+ V +NA + N ++++ + AD +E + S L+ Sbjct: 122 DNFYKSWSDLSKDPESVTARTIVKENALALTDAMNHMSKQLSNLSADLTSNVEAKSSELQ 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223 +++ + +N +I +A+D DQRD+++ KIS+I+ ++ + V Sbjct: 182 SYVNSIADLNQSITKIEGLGDNANDLRDQRDLIVDKISKIVNVTVTDTDQGYNVNMGGQA 241 Query: 224 ---------------------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 L + F + + + + + Sbjct: 242 LVTGFEPTTGINGAFLQAAFASNDLQGGEVHGMIFSRDRFVADYTAQMDNLANTLATGNI 301 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG---NSENVPGLFI 319 + + + L V + + + + + + Sbjct: 302 TVTLPKGSVLPEGTVLNGVTYTGTNRTLQSDLTVTVKGLNGLHQLGYTQEDKDANGNMVA 361 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 N + I +N NP+ + V + + G L + Sbjct: 362 GKPFFVTSNNGGTITAGNITLNTAIVDNPNAIAASLRV-TGTAPTEELVKGNNTLASLMS 420 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + NF T+ + + +G L ++ S + + + + Sbjct: 421 NLKLSNFTSVST---GNTATIDSFFSSMVGQLGIEAQEATRQTQNSTALVSQVETMRQSV 477 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GV+L EE+S +IK + +Y+ + + + D++L L+ Sbjct: 478 SGVSLDEEMSNMIKFQHAYSAAARFMTTFDQLLDKLINS 516 >gi|270262395|ref|ZP_06190666.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13] gi|270043079|gb|EFA16172.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13] Length = 548 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 79/551 (14%), Positives = 176/551 (31%), Gaps = 77/551 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N + Y R+ + + V Sbjct: 1 MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMSTMSGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + E L S G Q FE + ++ + N+ + + + Sbjct: 60 TVTSVNREYNQFITSQLRGAQSQAGAQN--AYFEKISQIDNLLASKTNTLSTNMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D +TV+ A +V FN + + ++ + + ++++ + + ++ Sbjct: 118 LQNLVSNAGDDAARQTVLGKANGLVNQFNNTDKYLRDMDSGVNQQLSDSAQQINSYSQQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S + + LDQRD L+ +++++G+ ++ + V ++G TL + Sbjct: 178 AKLNEEITRLRGSGGEPNALLDQRDQLVTDLNKVVGVQVTQQDGDAYTVSFANGLTLVQG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S + + + G S + G + +L+ R + +NQL Sbjct: 238 NNAYQVAAVPTSGDPSRLTMG-YDRGNGASEIPEGQITGGSVSGVLKFRSESLDSARNQL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGI--------------------------- 323 ++A + SF+++ + G Sbjct: 297 GQLALAMADSFNQQHRAGFDLNGDAGTDFFSFGGARAVDNNRNTGDAALSVSYTDTSKVK 356 Query: 324 -------KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 D N + + + VN ++ + K + + Sbjct: 357 ANDYRVEFDGSNWQVSRLPDNVKVNATAGTDAAGNPTLSFDGLKVGIDGTAQKNDSFTVK 416 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARN-----------------------------S 407 D + + + R Sbjct: 417 PVSDVAGSLKVAITDSANIAAAGKDDSGRGDNENAKKLLDLQTQKLVDGKATFSGAYASL 476 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + + + GVNL EE L++ +Q Y ++K+I Sbjct: 477 VSSVGNQTASAKVTATSQGNIVKQLENQQQSISGVNLDEEYGELLRFQQYYMANSKVIQT 536 Query: 468 TDKMLQTLLEG 478 + TLL Sbjct: 537 ASTLFDTLLNI 547 >gi|126176150|ref|YP_001052299.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] gi|125999355|gb|ABN63430.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] Length = 457 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 160/485 (32%), Gaps = 36/485 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ N ++ + + N+ NA Y R+ M + V Sbjct: 1 MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +SA+G ++ S+ E + + N+ + + +L +L S Sbjct: 58 GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFGAE--GNNVSKGLDQLFAALNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + + V++ A+ V Q N + R + ++ + + L+ + Sbjct: 116 SMEQPNLIAYRQGVLNEAKAVAQRVNAINDNIDSQRNQINGQLGSSVKEINSQLNIIASF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ + + D RD + ++ I+ I + + + + + G L Sbjct: 176 NRDIQAASVTGTIPPALQDSRDAAIDDLAAILDIRVVEDSQGMVNISLARGEPLLTGNTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++ I + ++ + G + ALL RD + Q +DE+ Sbjct: 236 AKLASAPDPANPKNDLVTIQFGSSQFNVDETA---GGSLGALLTYRDVQLADSQEYIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A +L F+ + + + ++ + Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGK------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + NK F + +N +L E + +G L Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSNTSLAESFSSKVGQLGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + +++T GVN EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAISFAKTSVDLQKDAQSQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451 Query: 474 TLLEG 478 T+L Sbjct: 452 TMLSS 456 >gi|304412502|ref|ZP_07394108.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|307307161|ref|ZP_07586899.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] gi|304349144|gb|EFM13556.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|306910400|gb|EFN40831.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] Length = 457 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 161/485 (33%), Gaps = 36/485 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ N ++ + + N+ NA Y R+ M + V Sbjct: 1 MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +SA+G ++ S+ E + + N+ + + +L +L S Sbjct: 58 GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFGAE--GNNVSKGLDQLFAALNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + + V++ A+ V Q N + R + ++ + + L+ + Sbjct: 116 SMEQPNLIAYRQGVLNEAKAVAQRVNAINDNIDSQRNQINGQLGSSVKEINSQLNIIASF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ +A+ D RD + ++ I+ I + + + + + G L Sbjct: 176 NRDIQAASATGTIPPALQDSRDAAIDDLAAILDIRVVEDSQGMVNISLARGEPLLTGNTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++ I + ++ + G + ALL RD + Q +DE+ Sbjct: 236 AKLASAPDPANPKNDLVTIQFGSSQFNVDETA---GGSLGALLTYRDVQLADSQEYIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A +L F+ + + + ++ + Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGK------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + NK F + +N +L E + +G L Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSNTSLAESFSSKVGQLGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + +++T GVN EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAISFAKTSVDLQKDAQSQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451 Query: 474 TLLEG 478 T+L Sbjct: 452 TMLSS 456 >gi|212709498|ref|ZP_03317626.1| hypothetical protein PROVALCAL_00540 [Providencia alcalifaciens DSM 30120] gi|212687836|gb|EEB47364.1| hypothetical protein PROVALCAL_00540 [Providencia alcalifaciens DSM 30120] Length = 546 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 77/547 (14%), Positives = 163/547 (29%), Gaps = 74/547 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L V N A + N A + I N+ NA Y R+ + + Sbjct: 2 LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R E + + G + + +D + + I +L+ Sbjct: 62 SHVRREFDEFVNAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIED--LSGSIGSFFTALD 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S S + S+ L + + +V F + R++Q++ D +++IE ++ ++ + ++ Sbjct: 120 SASSDASDKTLIDVFLGQSNALVSQFKEADRQLQEMERDINRQIENKVKDINIYAEKIAG 179 Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + S + +D LD RD L+ +++ +IG+ I + N + V ++G L Sbjct: 180 LNQQIARVRSVSGSEPNDLLDVRDRLVNEVNSVIGVKVIEQ-NGNYNVTFANGLPLVTGE 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +S + S V A G++ +L+ R V+ +++ Sbjct: 239 KANRLEAMPSSKDDSRFSIGFVGANDQVREIPDEAFKGGELSGVLRSRQEVLDPAYQKIN 298 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-- 349 ++A V F+E +S G K +T + Sbjct: 299 KLALVFATKFNEIHQKGFDSNGETGKDFFAIGKGSVVSNTFNTGKTDFDLSYSDVSQVTG 358 Query: 350 ----------------------------------------FLRDGGSVSKKFLWNVKNLA 369 + Sbjct: 359 KNYEMRFDGGKWNVTRLPDGVEVKVDTSTPGSLKFEGIELKITTNNPNQGDTFVVKPMNG 418 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTN------------------VTLLEYARNSIGWL 411 ++ DS AG N T ++ + + Sbjct: 419 VINNMQTLVTDSAQFAKAGSKDAGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDV 478 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + GVN+ EE + K++Q +N + +++ D + Sbjct: 479 GSRTKQAQIDSETQNKMTESFYRQEQEISGVNMNEESIQMQKIQQFFNANAQVLKTVDDL 538 Query: 472 LQTLLEG 478 L+ Sbjct: 539 FNALMRA 545 >gi|163735544|ref|ZP_02142976.1| flagellar hook-associated protein K [Roseobacter litoralis Och 149] gi|161391164|gb|EDQ15501.1| flagellar hook-associated protein K [Roseobacter litoralis Och 149] Length = 481 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 93/486 (19%), Positives = 178/486 (36%), Gaps = 17/486 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MS+ + A A + I N+ NA Y R+ + S V + Sbjct: 1 MSISGALSNAMTGLRAAGRTSEVISANLANAMTPGYGVRNLSLSSSQLGGVAIDGVMRSV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L ++ G F E + +S +++ +L + + Sbjct: 61 DPSLLADLRLADASFGNATDRTKFLNDFENLLGTPDQADSLAGRMAEFETTLITAASRPD 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 V+D A ++ + ++ VQ+ R+DAD+ I+++I L L + +N I Sbjct: 121 APERLNGVVDAARDIANLISAASDGVQQARSDADRSIQVQIDRLNTSLQNVKELNSQITR 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ DA D R ++ +I+ I+ + + R+N + +Y++ G L + +I F Sbjct: 181 TISTGSDASALFDSRQAIVDEINAIVPVRLVPRDNGQIALYSTGGAILLDGGVAEIEFNA 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293 +N T + G+ V+ G + A +IRD + Q QLD Sbjct: 241 VNQVTPFMTLGNGTLSGLSVNGYPVRTDSARGTLGGGTLGAQFEIRDELGTSAQTQLDAF 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPSF 350 AR L+ F + + PG+F G+ L + V+ + Sbjct: 301 ARDLVERFQDPAVDPSLAAGDPGIFTDAGVAFDPLNEVGLSARLGINADVDERQGGESWR 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 +RD G LI D+ + + + Sbjct: 361 IRD------GVNAVTPGDVGDARLIQSLSDTLTAKRTPASGEFGAGSFSAMNLISTLTSQ 414 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + +RS + + F+ +++ GV+ +EL L+ VEQ+Y + ++I D+ Sbjct: 415 VGSDRSRAEQSLSFASSQFDELTQQILAN-GVDSDQELQRLLIVEQAYAANVRMIEAADE 473 Query: 471 MLQTLL 476 M+QT+L Sbjct: 474 MMQTIL 479 >gi|10998529|gb|AAG25959.1|AF300968_1 FlgK [Sinorhizobium meliloti] Length = 472 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 246/481 (51%), Gaps = 10/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ + +QQ A++ +NI N+ N +Y RR M +P VV+ Sbjct: 1 MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQVVSIYRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K S Q L S + + + Y +SP+ Y+S R+SL++++ Sbjct: 61 EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + TV+ +A ++ + + ++ VQ +R D+DK+I E++NL R L++ N+A++ Sbjct: 121 TTIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVRQA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ DA LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++Y T N IFIDGV +++ G+ +GK+ LLQ+RD + P FQ+QLDEMAR L+ Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGSGADTSAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F E + ++ + + Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N AGY L++ + + + + FD G++ +++E+A +SIGW E+ RS + Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ + GV++ EELS L+ +EQSY S KLI D M+ +LLE V Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471 Query: 480 K 480 + Sbjct: 472 R 472 >gi|150395504|ref|YP_001325971.1| flagellar hook-associated protein FlgK [Sinorhizobium medicae WSM419] gi|150027019|gb|ABR59136.1| flagellar hook-associated protein FlgK [Sinorhizobium medicae WSM419] Length = 472 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 247/481 (51%), Gaps = 10/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ + +QQ A++ +NI N+ N +Y RR M +P +V+ Sbjct: 1 MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQIVSIYRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K S Q L S + + + Y ++P+ Y+S R+SL++++ Sbjct: 61 EALLKQNLISISQSSAQSSLLSGLEIMKSALGGNDYESAPSTYLSAFRNSLQTFASTPGN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + TV+ +A ++ + + ++ VQ +R D DK+I +++NL R L++ N+A++ Sbjct: 121 ATIAATVVSDASDLANSISRTSAAVQDLRLDTDKKIAEDVANLNRLLAQFETANNAVRQA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ DA LD RD +L+++SE++GIST+ R NND V+YT+ GT LFET+PR++ F Sbjct: 181 TAAGTDATAALDDRDRILKQVSELVGISTVTRANNDTVIYTAGGTVLFETLPREVTFAPK 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++Y T N IFIDGV +++ G +GK+ LLQ+RD + P FQ QLDEMAR L+ Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGNGADTNAQGKLAGLLQLRDDIAPTFQTQLDEMARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F E ++ ++ + + Sbjct: 301 LFQE---------GGLPGLFTWSGGNVPAAGAVEAGIAAYLSVNPAAKSNPFLLRDGGFN 351 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N N AG+ DL++ + + + + FD AG++ +++E+A +S+GW E+ RS + Sbjct: 352 GIVSNPGNNAGFTDLLDSFVAAMDGDMAFDSAAGLDGTSSIMEFAASSVGWFEQIRSGAS 411 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ + GV++ EELS L+ +EQSY S KLI D M+ +LLE V Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471 Query: 480 K 480 + Sbjct: 472 R 472 >gi|15964433|ref|NP_384786.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti 1021] gi|307311575|ref|ZP_07591216.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti BL225C] gi|15073610|emb|CAC45252.1| Putative flagellar hook-associated protein [Sinorhizobium meliloti 1021] gi|306899592|gb|EFN30221.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti BL225C] Length = 472 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 246/481 (51%), Gaps = 10/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ + +QQ A++ +NI N+ N +Y RR M +P +V+ Sbjct: 1 MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQIVSIYRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K S Q L S + + + Y +SP+ Y+S R+SL++++ Sbjct: 61 EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + TV+ +A ++ + + ++ VQ +R D+DK+I E++NL R L++ N+A+K Sbjct: 121 ATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVKQA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ DA LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++Y T N IFIDGV +++ G+ +GK+ LLQ+RD + P FQ+QLDEMAR L+ Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGSGADTSAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F E + ++ + + Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N AGY L++ + + + + FD G++ +++E+A +SIGW E+ RS + Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ + GV++ EELS L+ +EQSY S KLI D M+ +LLE V Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471 Query: 480 K 480 + Sbjct: 472 R 472 >gi|163744345|ref|ZP_02151705.1| Flagellar hook-associated protein [Oceanibulbus indolifex HEL-45] gi|161381163|gb|EDQ05572.1| Flagellar hook-associated protein [Oceanibulbus indolifex HEL-45] Length = 468 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 179/480 (37%), Gaps = 13/480 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + FN A++ + + + + NI NA + Y RR+ + V + + Sbjct: 1 MSISSAFNIARSGLSTTEGRASLVAGNIANAQTEGYARREAVQVTGNNTVDL-RVARQVD 59 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S+ +G + + + SP +++ + L+ + N S+ Sbjct: 60 ERLAGMTRGASAQLGAASVTGEVLGSYLLTLGEPGDEVSPAARLAEFQAGLDLLANNPSD 119 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ +E +V + N +A ++ R A +S + L+++ +N+ ++ Sbjct: 120 PAAQNDLLSRSETLVNSVNQAAVALEASRVQAGDSFVQSVSEVNEALADIAELNERLRLV 179 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +D+ + L + + + ++ + ++T+ GT L Sbjct: 180 GGDGTGKAGLMDEMNRRLDALGSQMDFQSRWESDGSLTLHTTGGTELVHGDKAVRLTANR 239 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T+ + + I + G++ L + + +P + QLDE AR L+ S Sbjct: 240 ETGTLMAGNIDITPGRATARGS-----DSGRLAGLSGLIANDLPQMKLQLDEFARGLVQS 294 Query: 301 FSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F D + + L +S V+P LRD Sbjct: 295 FEAADASVGAGQPGLFTDAGGAFDATALDGLAGRLSINNSVHPDKGGALWRLRD------ 348 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ G +N + D FD G++T L ++ + + R + Sbjct: 349 GAGATIQGEPGDTTQLNAFVDVLETGITFDAATGLSTTARLGDFGADMVSQQNVLRVGAD 408 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++V ++ S+ GVN+ EL L+++EQ+Y + +++ ML TLL V Sbjct: 409 AQAETARVRLVTFEDNRSSIEGVNIDTELQKLLEIEQAYGANAQVLSSLTDMLDTLLASV 468 >gi|126730122|ref|ZP_01745934.1| flagellar hook-associated protein K [Sagittula stellata E-37] gi|126709502|gb|EBA08556.1| flagellar hook-associated protein K [Sagittula stellata E-37] Length = 482 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 178/489 (36%), Gaps = 18/489 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56 MSL N A + ++ + I NI NA N+ Y RR V V Sbjct: 1 MSLTGALNAAVSGLKANTRAASLISTNISNATNEAYGRRTLELNALGSGTRGGVLVAGVV 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + A S + + +F E + + + S T I+ ++L S S Sbjct: 61 RQYDPVLMADRMASDSQLAGGNDMYAFAKRMETLVGESGTSGSLTSRITAFENALLSASS 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + V A ++ N + EVQ R AD I ++S L +S L +ND Sbjct: 121 NPASAQRLELVAVTATDLTNAVNDLSNEVQLARQTADTTIAKQVSTLNAAVSRLAAINDI 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 ++ AS + LD+R LL +IS I+ + + R+ + ++T G L + +I Sbjct: 181 VRSAEASGTETASILDERQALLNEISGIVPLRVVERDRGQIAIFTRRGGVLLDGKAYEIG 240 Query: 237 FEKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 F + ++ + + ++G ++S+ G + A ++RD Q +LD Sbjct: 241 FSTTGTIDASTTLGSGGLSGLTLNGAPINSSFNGMFAGGSLAAQFELRDVTAVGRQAELD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI--SETICVNPQYRSNPS 349 +AR LI P PG F +GI + Sbjct: 301 GIARDLIERLGPGGPDTTLGATDPGFFTDNGIAFTAANETGIAGRISLNALLAPAGGGTW 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 +RD G LI D+ + + + + T ++ Sbjct: 361 RIRD------GIGAAAPGEVGDAALIQDIADALGASNVPGSASLPSIARTFIDQVSQFSS 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + R S + + E T GV+ +EL L++VEQ Y + K+I D Sbjct: 415 SVAGERVRSENAFTFLSAQNRALREMEL-TKGVDTDQELQKLMQVEQYYTANAKVISTVD 473 Query: 470 KMLQTLLEG 478 + + LL Sbjct: 474 DLFERLLSI 482 >gi|296102902|ref|YP_003613048.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057361|gb|ADF62099.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 545 Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 73/546 (13%), Positives = 168/546 (30%), Gaps = 72/546 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI + + Y R+ T+ S V V Sbjct: 1 MSSLINSAMSGLSAAQAALNTVSNNISSYNVAGYTRQTTVLGASNSTLTGGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + +D NS + + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTTRYQQMSKIDDVLSD--STNSLSTTLQDFFKSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +TV+ A+ +V F T+ + ++ + + I + + + ++ Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKTNDQYLRDQDSQVNTAIASSVEQINNYAKQIAN 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ V +G +L + Sbjct: 179 LNDQISRLTGVGAGSSPNDLLDQRDQLVSELNQIVGVEVAVQDGGTYNVSFGNGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + + V G + L R + +N L Sbjct: 239 SKANQLAAVKSSADPTRTTIAYSDEVSGNVEIPEKMVTTGSLGGLFTFRSEDLDKARNNL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------- 342 +++A + +++ ++ G + D + Sbjct: 299 NQLALAFADAMNKQHEAGFDANGDAGGKLFDFGSPAVVTNSRNTGTAAMTATVADSTKVQ 358 Query: 343 ------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD------- 389 Q+ + S + + L + S N F Sbjct: 359 ATDYKLQFNGTDWTITRSDKTSFTMAPDASGNLSFDGLSVNVTGSANAKDSFIVKPVSDV 418 Query: 390 -------------------------------------PVAGINTNVTLLEYARNSIGWLE 412 + N T + + + + Sbjct: 419 IVNMELKFKDESKLAMASASNGGESDNRNGQKLLDLQNSKVVGGNKTFNDAYASLVSTVG 478 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + V +++ + GVNL EE L + +Q Y + +++ + Sbjct: 479 SSTAALKTSSETKANVATQLTKQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTASTLF 538 Query: 473 QTLLEG 478 ++ Sbjct: 539 DAIINI 544 >gi|225849064|ref|YP_002729228.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium azorense Az-Fu1] gi|225644050|gb|ACN99100.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium azorense Az-Fu1] Length = 483 Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 80/491 (16%), Positives = 176/491 (35%), Gaps = 23/491 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MSLL + + A + S +NI NA + Y R + P V + Sbjct: 1 MSLLGILSTAGQSLLTFQRGINSTNKNISNATTEGYNREVPVFQDFPRSGVFMNKIIRVF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + E M +D + + ++ +S+ Sbjct: 61 DRSLFNRSIELNQQLNSDNSFSEILSNIETMF-NDTLGSGFSSDLNNFFNSINDMLIKPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + NA+ +V + + + D ++ ++ + + +L +N IK Sbjct: 120 DIAARSQFLANAQTLVGKIRSINDSLDNQKQDITLKVRDQVKQINQITDQLAKLNQTIKT 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD-INFE 238 KT +++L++RD L++++S++I + +N + V+T+ G L + ++FE Sbjct: 180 KTLDIEANNEYLNERDRLIKQLSDLIDTKVVFNEDNTVNVFTAKGYGLVVGIQSTPLSFE 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + N + +++ + G +K + I D N+L++ V Sbjct: 240 TDTNGNPVVKWNGV----ADITTEIQNGQLGGNLKGIKSINDQ-----LNKLNDFTTVFA 290 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNK----LCQGISETICVNPQYRSNPSFLRDG 354 F++ + L + ++ T N ++L Sbjct: 291 TVFNKVHKKGYGLDGSTNLDFFTIDPSKSSTKIDASNIYLNITDPKKVALAQNSTYLNSD 350 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYC------DSFNKNFIFDPVAGINTNVTLLEYARN-S 407 + K L N+ + + + + T E+ Sbjct: 351 NTNGKDLLGLKNNIRVLYTNPSQPVLTPAEEAALQSSLNDSTNYTYIKDHTFAEFYNTKL 410 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + S ++ +++ I+E N GVN+ EEL L K+++SY S ++I Sbjct: 411 VADISSTSSYIKQQQQNNKYLYDAITEKMKNIAGVNMDEELINLSKLQRSYQASARIITV 470 Query: 468 TDKMLQTLLEG 478 TD+++QT+L Sbjct: 471 TDELMQTILNL 481 >gi|170744544|ref|YP_001773199.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46] gi|168198818|gb|ACA20765.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46] Length = 483 Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 122/484 (25%), Positives = 209/484 (43%), Gaps = 6/484 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L A++ +S Q A RN+ A + Y R+ VT V+ + Sbjct: 1 MGLSLALATARSSLLASSTQIAVSSRNVAGASSAGYSRKIATLVPGTGGVT-VSITRASD 59 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + +S + + L + D S +S L +L+S + + Sbjct: 60 AALYARMISATSDLAGSQQLLRGLQSLQQTVGDPQSTTSAAARLSALAAALQSAANRPDD 119 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + +D A ++ + N +A V + +ADAD + ++ + LS+ + N A+ Sbjct: 120 ATLARAALDKARDLAASLNQAAGAVARTQADADAAMGESVTRISDLLSQFDLANKAVMRG 179 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA D D LD RD ++ K+SE +G++ + R D+ +YT G L++ +PR ++F Sbjct: 180 TALGADVTDALDSRDQIIAKLSEELGVTVVPREGGDVALYTDSGVPLYDRIPRKVSFAAT 239 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y + N + IDGV V+ N + G + L Q+RD P + QLDE+A LI Sbjct: 240 PTYQSGTTGNAVIIDGVAVTGPNSPMPLRSGTLAGLSQLRDVAAPAYAAQLDEIASALIA 299 Query: 300 SFSEKDPIAG-NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 +F E G + + + L I+ V+PQ +P+ LRDGG Sbjct: 300 TFRETSSSGGADLAGLFRNGSTSALPSSKAGLAAAITLNAAVDPQRGGDPALLRDGGMNG 359 Query: 359 KKFLWNVKNLA---GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + N Y + + + G ++ L EYA S GWLE R Sbjct: 360 AAYRSNPAAAGSGTAYAGRLTALVAALSAKQSLGSAPGPTGSMALAEYAGASAGWLESQR 419 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + S++ SN GVN +E + +++E+SY S KL+ D++ +TL Sbjct: 420 KVASSTVDQQTTLLGRASDALSNVTGVNTDDETALTLQLERSYQASAKLVTLIDELFKTL 479 Query: 476 LEGV 479 + V Sbjct: 480 MNAV 483 >gi|328470107|gb|EGF41018.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 10329] Length = 457 Score = 194 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 67/481 (13%), Positives = 154/481 (32%), Gaps = 39/481 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57 N A + N +N+ + + Y R+ + S V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVASVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K + +S S + E S + + L +L + Sbjct: 65 VTDQFLVKQTWSTNSLAAYAAGYTSSMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ +E + + FNT + + D + + +++ +S + VN I Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRSAALTHANSLMSNIAHVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+R+ L+ ++S++I + T + + M V G L Sbjct: 183 VEMQGTGGNPAQLMDKRENLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + GK+ A+ + V+ Q LD+MA+ L Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + G + + D L Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ ++ G +++ D NK +V+L + + +G Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + N VN EE + L+ ++N + K+I +++ ++L+ Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455 Query: 478 G 478 Sbjct: 456 L 456 >gi|323492332|ref|ZP_08097485.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] gi|323313379|gb|EGA66490.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] Length = 457 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 148/479 (30%), Gaps = 39/479 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 N A + N +N+ N + Y R+ M T V V + R Sbjct: 5 NIALSGLNANRVALDVTAQNVSNINTPGYSRQQAMMTSVGAGKYDKLSAGMGVEVASIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + +S + + E S + + L +L + Sbjct: 65 VTDQFLIQQTWSTNSLSAYATRYTTNMSQLENTLG--ADGFSLSAGLDTLFSALNDATVK 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + +I+ AE + + FNT + D + +S+ ++ + VN I Sbjct: 123 PESIPYRQQIINEAEALSRRFNTLTESLHNQHKDMSDQRSAAVSHANSLMTNIADVNKQI 182 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + +D+RD L+ ++S+++ + T + + + V + G L Sbjct: 183 VEMQGTGGNPAQLMDERDALIGELSKVVEVKTTAQADGSLQVTLASGQPLVMGSDAGQLK 242 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G+I A+ + V+ +Q +++MA+ L Sbjct: 243 AVPDPSDAYLADMQVEFGNQSFAI---TGSTGGQIGAINDFQTEVLKPYQVAINDMAKAL 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+ + G + S L G Sbjct: 300 ADEFNNVLATGTDLNGNAGSALFSYDPANPA--------------------SSLTVTGID 339 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + G D ++ NK +++L + +G Sbjct: 340 PDELALSGDGNPGNADTLDALIAISNKAVTV----TGFGSLSLNDAFTAMVGETAIKARQ 395 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + N VN EE + L+ ++N + K+I +++ ++L Sbjct: 396 ADADYQAKLAINQQAIAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVL 454 >gi|308071106|ref|YP_003872711.1| flagellar hook-associated protein [Paenibacillus polymyxa E681] gi|305860385|gb|ADM72173.1| Flagellar hook-associated protein [Paenibacillus polymyxa E681] Length = 526 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 73/523 (13%), Positives = 163/523 (31%), Gaps = 51/523 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A+ N + + NI NA+ Y R+ Sbjct: 3 STFHGIETAKRSLNTQTAALNTTGHNISNANTAGYSRQVVSMKASDSMEAYGLNRSVVRG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D SS+ G + E + ++ + + Sbjct: 63 QMGTGVEFTAIERVRQTFLDDQYRNESSSQGGWDIRYDTLNKLETIM-NEPSDTGIRKVM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 D+ S++ + K V + + N +++++ + +D + L+ S + Sbjct: 122 DNFWDAWSDLSQDPQDVTNRKIVKETTLALTDAMNQTSKQLDALSSDLTTNVTLKTSEMN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY---- 220 L + +N I + +D DQRD + K+S++ + +N V Sbjct: 182 SLLQSVADLNSNIYKLEQLGDNPNDLRDQRDYAVDKLSKLANVQVTQLDNGYQVTVAGQI 241 Query: 221 ----------------------TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 T G ++ + + + +N + + Sbjct: 242 AVAGTEVTAITAAGLEAAYQGGTLTGGEVYGMILSRDKYVADYKTQMDQLANTLANGNIE 301 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL---IGSFSEKDPIAGNSENVP 315 ++ G+ +P+G + +V N + L + + + Sbjct: 302 ITLPAGTVLPEGTVLNSGVNNAAVTYSNANNNRTLTADLKVTVQGINGLHQLGYTLSGTT 361 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 D + I +N + +P+ + V N K G L Sbjct: 362 PQKGGAFFTSKDGAA--ITAGNITLNKDIQDDPNKIASSLRVDGTGTANEKVTVGNNALA 419 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 N F F+ T+ ++ +G L ++ +Q++ + + Sbjct: 420 LSMASLKNVKFGFN--TTQAQTTTVDDFFSAIVGQLGVQTQEAERQSQNAQLLTEQVDLN 477 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + GV+L EE+S +IK + +Y+ +++ + D++L L+ G Sbjct: 478 RQSVSGVSLDEEMSNMIKFQHAYSAASRFMTTFDQLLDKLING 520 >gi|291326355|ref|ZP_06124197.2| flagellar hook-associated protein FlgK [Providencia rettgeri DSM 1131] gi|291314693|gb|EFE55146.1| flagellar hook-associated protein FlgK [Providencia rettgeri DSM 1131] Length = 562 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 72/548 (13%), Positives = 167/548 (30%), Gaps = 75/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L V N A + N A + I N+ NA Y R+ + + Sbjct: 17 LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 76 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R E + + G + + +D + + I +L+ Sbjct: 77 SHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIED--ISSNIGSFFTALD 134 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + S+ L + N+ ++ F + R +Q++ D + +IE ++ ++ + ++ Sbjct: 135 AASSDASDKTLIDVFLGNSNALLGQFKEADRRLQEMERDINHQIENKVKDINIYAEKIAG 194 Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + S + +D LD RD L+ +++ ++G+ I + N + V ++G L Sbjct: 195 LNQQISRIRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQ-NGNYNVTFANGLPLVTGE 253 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +S + S + G++ +L+ R V+ +L+ Sbjct: 254 KANRLEAVPSSKDDSRFSIGFVGANGQAREIPDESFRGGELSGILRSRQEVMDPAYQKLN 313 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---------------ISE 336 ++A V F+E ++ G + K ++ Sbjct: 314 KLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTG 373 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL---------------------------- 368 + + R ++ N Sbjct: 374 NNYELRFDGNEWNVTRLPEGINVPVDSNTAGTLKFDGLEIKISNSTGMSKGDSFLVKPVS 433 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTN------------------VTLLEYARNSIGW 410 + ++ + +G N T ++ + Sbjct: 434 GVINGMQTLVSNASDFAAAGSKDSGPGDNENIKQLVKLQDEKLIDGSSTFSDFYATLVND 493 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + E GVN+ EE + K++Q +N + +++ D Sbjct: 494 VGSKTKQAQIDSETQNKMTESFYEQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDD 553 Query: 471 MLQTLLEG 478 + L+ Sbjct: 554 LFNALMRA 561 >gi|257871323|ref|ZP_05650976.1| flagellar hook-associated protein FlgK [Enterococcus gallinarum EG2] gi|257805487|gb|EEV34309.1| flagellar hook-associated protein FlgK [Enterococcus gallinarum EG2] Length = 507 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 77/502 (15%), Positives = 154/502 (30%), Gaps = 27/502 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 L A + NI N + Y R+ V Sbjct: 3 GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + +S E + ++ +N + ++ + DS Sbjct: 63 KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N D V++N+ N +++ ++++D IE + + +L Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T S +D LD+RD LL+ +S + GI T V S T L Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI----- 285 ++ S T S + + D+ Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTILLTKTTDNGDTAYTELPIKE 301 Query: 286 -FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L + + +E + + G G +T Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTTTIAQAMNMVFTSGASRTSGLFEIGQDDTGTATTIR 361 Query: 345 RS-----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395 S NPS + G S + +A + S FDP A Sbjct: 362 VSQALLDNPSLVAGGTSNTAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDPETLTFANAA 421 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + +++ Y + + ++ + + + N + + GV+L EE+S +I+ + Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 Q + + +++ +ML TL+ Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503 >gi|302874576|ref|YP_003843209.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] gi|307690813|ref|ZP_07633259.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] gi|302577433|gb|ADL51445.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] Length = 579 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 80/577 (13%), Positives = 172/577 (29%), Gaps = 101/577 (17%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S+L+ N A N ++ NI NA+ + Y R+ S Sbjct: 3 SILSTLNTANKGINAQQTAISTTSHNIANANTEGYSRQRVNLVTSRPFSSPSFNSAAGPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + D + S +G Q + + E + ++ + + ++ + Sbjct: 63 QIGTGVDVASIERIRNTFLDYQVRQEKSNLGNQTTRNQYLSNIESIM-NEPTDTALSNAM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + ++ + V NA V N + ++K++ D I + ++ Sbjct: 122 DRFYSAWQEFANKPEDSNSRTVVAQNALSVSDMLNQTYFSLEKMQNDIHDNIRQNVLDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI----------------------- 201 L+ L +N I + S +D +D RD+LL ++ Sbjct: 182 NLLNSLDSINQQIIQVSVSGQSPNDLMDTRDLLLDQLSENMGITVDRTPDFNGNNILPTE 241 Query: 202 ---------------------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 S + I + +N + Y T + Sbjct: 242 TNGIGDATLVKSVFNDQVKRYSYVSNIEDLGGSNYKITYYKYGDMTSNANADSFVVKMND 301 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSA-----------------VPKGKIKALLQIRDSVV 283 Y +S I+ + + + G + L I+ V Sbjct: 302 AEYKKLDQSRVIWANAQGAAIKNSTDTIKSTDVLNFSELRIFEPSSGDLAGLRTIQADV- 360 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG-----LFIADGIKDLDNKLCQGISETI 338 ++++L+ A+ L S + + + F + + + I Sbjct: 361 DQYKDKLNRFAKALAFSVNAVHTQSVDGTPSTNVENSIDFFVNNEDTSIDWEKNITAGNI 420 Query: 339 CVNPQYRSNPSFLRDGGSVSKK----------------FLWNVKNLAGYPDLINHYCDSF 382 VN S+ + G S Sbjct: 421 TVNKDIISDVMKINSGLKDGGNKDNRIALAIAMLKDVTIKAQDVTSTTDRVDFTSTMASL 480 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ +TL Y ++ + L + D + N + + + GV Sbjct: 481 TNENSTITFKNVDGGMTLKSYHKDLVAKLGVQNKQAVDDVSTRTSLLNQLQSARDSVSGV 540 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ EE++ LI+ + +Y + K+I D++L L+ G+ Sbjct: 541 SIDEEMTNLIQFQHAYVANAKVISTVDQLLDVLVNGL 577 >gi|183598623|ref|ZP_02960116.1| hypothetical protein PROSTU_02024 [Providencia stuartii ATCC 25827] gi|188020803|gb|EDU58843.1| hypothetical protein PROSTU_02024 [Providencia stuartii ATCC 25827] Length = 559 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 78/547 (14%), Positives = 171/547 (31%), Gaps = 74/547 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L V N A + N A + I N+ NA Y R+ + + Sbjct: 15 LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 74 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R E ++ + G+ + + + +D + + I +L+ Sbjct: 75 SHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIED--ISSNIGSFFTALD 132 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + S+ L + + +V F + R +Q++ D +++IE ++ ++ + ++ Sbjct: 133 AASSDASDKTLIDVFLGKSNALVGQFKEADRRLQEMERDVNRQIETKVKDINTYAEKIAG 192 Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + S + +D LD RD L+ +I+ +IG+ I + N + V ++G L Sbjct: 193 LNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLIGVKVIEQ-NGNYNVTFANGLPLVTGE 251 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +S + S V A G++ +L+ R V+ +L+ Sbjct: 252 NANRLEAVPSSQDDSRFSIGFVGANGQVREIADDAFRGGELSGVLRSRKEVIDPAYQKLN 311 Query: 292 EMARVLIG--------------------------------------SFSEKDPIAGNSEN 313 ++A V F Sbjct: 312 KLALVFASKFNEVHKKGFDANGNPGKDFFEIGKGNVVSNTFNRGKAEFDFNYSDVSQVTG 371 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 DG + +L +G + T+ + + + + + + Sbjct: 372 NNYEMRFDGKEWNVTRLPEGFAVTVDRSTPDTLKFDGIELKITQNNVQSGDSFLVKPVNG 431 Query: 374 LINHYCDSFNKNFIFDPVA----------------------GINTNVTLLEYARNSIGWL 411 +IN + F I T +Y + + Sbjct: 432 VINGMQSLISDAANFAAAGEKGSGPGDNDNLKELVKLQDQKLIGGTSTFSDYYATIVNDV 491 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + GVN+ EE + K++Q +N + +++ D + Sbjct: 492 GNQTKQAQIDSETQNKMTESFYQQEQAVSGVNMNEESIQMQKIQQFFNANAQVLKTVDDL 551 Query: 472 LQTLLEG 478 L+ Sbjct: 552 FNALMRA 558 >gi|119385424|ref|YP_916480.1| flagellar hook-associated protein FlgK [Paracoccus denitrificans PD1222] gi|119375191|gb|ABL70784.1| flagellar hook-associated protein FlgK [Paracoccus denitrificans PD1222] Length = 486 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 94/489 (19%), Positives = 179/489 (36%), Gaps = 15/489 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----PENVTVVTQR 56 MS+ + + A + AS+ + NI NA + RR+ + V + Sbjct: 1 MSISSAISNAVSGLTAASRGIEIVSSNIANALTPGHARRELDLSSRPSEHGGGVNIDGVS 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + +G R + +F A E +S ++ +L S + Sbjct: 61 RIFTAGLIADNRLAEAGVGSSRTVAAFHAAMEKAFGTGTGISSLGQSLTDFESALTSAAS 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 D+ V+D A + + N + +Q R+ A++ IE ++S L L ++ +N Sbjct: 121 RPDSDMRLSNVLDTATALAKKINDISTTIQAERSKAEQAIESDVSRLNAALQQVAKLNAQ 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV-PRDI 235 I TA DA +D R + IS+I+ I + R N + ++T DG L + P I Sbjct: 181 IVTITAQSKDASSLVDARQAAIDGISDILPIKEVPRENGRIALFTPDGAILLDGTEPARI 240 Query: 236 NFEKMNSYTV-----TSESNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQ 289 F + T +S + + ++G ++ Q + G + A IRD + P +Q Q Sbjct: 241 EFSAVPGITAEMSIGSSALSALTLNGKPLTGPQQQTMLSGGSLGANFAIRDQIAPAYQQQ 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +D AR L S+ + + PGLF + +P Sbjct: 301 IDAFARDLYDRLSDPMIDSSLNTGGPGLFTDAQGAFDPANESGFAGRIA---VTFLVSPE 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + +G L++ + + + N +L + Sbjct: 358 TGGQLWRIRAGINAPDPGNSGESALLDRLSSAISASRFPASAHLSNAPRSLQTLSAELSS 417 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 NR S ++S + + + GV+ +E+ L+ +E++Y + K+ + Sbjct: 418 GAATNRIRSEASALQSSSHQSGLKAALLAE-GVDSDKEMESLLALERAYAANAKVFQTAN 476 Query: 470 KMLQTLLEG 478 ML +L Sbjct: 477 DMLDAILRL 485 >gi|257866412|ref|ZP_05646065.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC30] gi|257873072|ref|ZP_05652725.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC10] gi|257800370|gb|EEV29398.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC30] gi|257807236|gb|EEV36058.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC10] Length = 507 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 27/502 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 L A + NI N + Y R+ V Sbjct: 3 GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + +S E + ++ +N + ++ + DS Sbjct: 63 KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N D V++N+ N +++ ++++D IE + + +L Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T S +D LD+RD LL+ +S + GI T V S T L Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241 Query: 231 VPRDINFEKMNSYTV----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ S T + L I++ Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-DNKLCQGISETIC 339 + Q E+ L + IA V + + G + TI Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTTTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395 V+ NPS + G S + +A + S FD A Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + +++ Y + + ++ + + + N + + GV+L EE+S +I+ + Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 Q + + +++ +ML TL+ Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503 >gi|325567496|ref|ZP_08144163.1| hypothetical protein HMPREF9087_0452 [Enterococcus casseliflavus ATCC 12755] gi|325158929|gb|EGC71075.1| hypothetical protein HMPREF9087_0452 [Enterococcus casseliflavus ATCC 12755] Length = 507 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 27/502 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 L A + NI N + Y R+ V Sbjct: 3 GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + +S E + ++ +N + ++ + DS Sbjct: 63 KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N D V++N+ N +++ ++++D IE + + +L Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T S +D LD+RD LL+ +S + GI T V S T L Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241 Query: 231 VPRDINFEKMNSYTV----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ S T + L I++ Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-DNKLCQGISETIC 339 + Q E+ L + IA V + + G + TI Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTSTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395 V+ NPS + G S + +A + S FD A Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + +++ Y + + ++ + + + N + + GV+L EE+S +I+ + Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 Q + + +++ +ML TL+ Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503 >gi|257876025|ref|ZP_05655678.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC20] gi|257810191|gb|EEV39011.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus EC20] Length = 507 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 76/502 (15%), Positives = 153/502 (30%), Gaps = 27/502 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 L A + NI N + Y R+ V Sbjct: 3 GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + +S E + ++ +N + ++ + DS Sbjct: 63 KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N D V++N+ N +++ ++++D IE + + +L Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T S +D LD+RD LL+ +S + GI T V S T L Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241 Query: 231 VPRDINFEKMNSYT------VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 ++ S T + NP + + Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L + + +E + + G G +T Sbjct: 302 GAIGGLQASSSEIGSRLTELNNFTTTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361 Query: 345 RS-----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395 S NPS + G S + +A + S FD A Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + +++ Y + + ++ + + + N + + GV+L EE+S +I+ + Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 Q + + +++ +ML TL+ Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503 >gi|319409168|emb|CBI82812.1| Flagellar hook-associated protein FlgK [Bartonella schoenbuchensis R1] Length = 456 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 119/481 (24%), Positives = 224/481 (46%), Gaps = 26/481 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + N A+N + Q + +N+ A + NYVRR + P+ + R + Sbjct: 1 MGFNSTINTARNSLKATTGQLGIVSQNVVGAQDPNYVRRTSYIESGPKGAVHLMVRRDGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + + + D ++ +P+ +S + +L++Y+ + + Sbjct: 61 IHLLNNYLVKSSQAAVSGSVANGLNRLSNIYGVDEFSRAPSQLLSDFQKALQTYANDPQQ 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G +D A ++V + N RE++K+R DAD +I+ + ++ L + ++ + + Sbjct: 121 RFAGDAAVDRARDLVYSLNEGNREIEKLRNDADSDIQDSVDHINDLLQQFHELDQYVVRE 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + D ++DQRD +L+ +S+ IGI+T+ ++ M +Y DG+TL++ PR++ F+ Sbjct: 181 RNAGRDDSIYMDQRDTVLKALSQEIGINTVYHSDGSMTIYGMDGSTLYDKTPREVTFQSS 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S +F+DGV + + G + LL+IRD + P +Q QLDEMA L+ Sbjct: 241 GSLPAGVAGKQVFVDGVPLGHPSFVEPNGGGNLGGLLRIRDEIAPQYQKQLDEMANALLQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F P LF+ D D +G+S I +N + SN Sbjct: 301 MF----------PGPPSLFLDDNQPDGVIGPIEGLSGRIRLNSVFDSNT----------- 339 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + + D+F++ F G+ +++++++NSIGWLE RSD+ Sbjct: 340 ----EGGGPEHFGEDLQSLVDAFDQKRTFGTDTGLFPEQSIMDFSKNSIGWLEGLRSDAD 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F H SE+ SN GVN +E+ ++++EQ+Y + ++I KML L+ + Sbjct: 396 KDAKYHSTMFLHASEALSNGTGVNTDDEMVLMLQLEQTYAATTRIISTVGKMLDDLMIAI 455 Query: 480 K 480 + Sbjct: 456 R 456 >gi|146294544|ref|YP_001184968.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] gi|145566234|gb|ABP77169.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] Length = 457 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 160/485 (32%), Gaps = 36/485 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ N ++ + + N+ NA Y R+ M + V Sbjct: 1 MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +SA+G ++ S+ E + N+ + + +L +L S Sbjct: 58 GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFG--ADGNNISKGLDQLFAALNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++V++ A+ V Q N + R + ++ + + L+ + Sbjct: 116 SMEQPNLIAYRQSVLNEAKAVAQRVNAINDNIDSQRNQINGQLGTSVKEINAQLAIIANF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ + + D RD + ++ II I + + + + + G L Sbjct: 176 NRDIQAASVTGTIPPALQDGRDAAIDDLAAIIDIRVVEDSQGMLNISLARGEPLLTGNTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + I + ++ + G + ALL RD+ + Q +DE+ Sbjct: 236 AKLTSAPDPANPKNNLVSIQFGASQFNVDETA---GGSLGALLNYRDTQLADSQAYIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A +L F+ + + + ++ + Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGQ------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + NK F + ++ +L E + +G L Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSSTSLAESFSSKVGQLGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + +++T GVN EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAISFAKTSVDLQKDAQVQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451 Query: 474 TLLEG 478 T+L Sbjct: 452 TMLSS 456 >gi|89068727|ref|ZP_01156113.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516] gi|89045690|gb|EAR51752.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516] Length = 470 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 87/485 (17%), Positives = 185/485 (38%), Gaps = 21/485 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--SE 58 MSL + ++ S+ + N+ NA + YVRRD + + V+ + Sbjct: 1 MSLTNALSAGRSGLLAVSRWSETTAGNVANAKTQGYVRRDVGLSTNVVGGGVIVTGITRD 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + ++ H + Q + + + + L+D+ + + Sbjct: 61 SDAALTRLHRDHLAEGATQSTISDRLQAYATALGQPGDPTTLSARLGGLQDAFVALASTP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++V++ AE N +R++ ++I ++ + LSEL +N + Sbjct: 121 GSGPAQRSVLEAAEGAAAALNGLSRQLDSAVRGVGEQIAGQVERVEGLLSELAAMNARMA 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-LFETVPRDINF 237 + + D+ D L ++ + R + + ++T DGT L P + F Sbjct: 181 GTEQGTAASAELRDRMDGRLDALATSLDFQVRERVDGGLDIFTPDGTVMLDGDDPAPLTF 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSN--QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + DGV ++ G + +G + L ++R ++P F+ QLDE AR Sbjct: 241 DPN---------SGLAFDGVDITPGKAVGRGITEGVLAGLTELRSEILPRFRMQLDETAR 291 Query: 296 VLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L+ +F++ DP + A L L I+ P+ +RD Sbjct: 292 ALVQTFADADPTVGAGGAGLFTDAGAGYDPALHEGLAGRITVNDAARPEAGGALWRVRD- 350 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + G +++ D + ++DP G+ L E+A + Sbjct: 351 -----GMGAVSEGPPGDATVVDGILDRLAQGQVYDPATGLQGGAPLGEFAAQLMADQHAV 405 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 R+ + ++ES + GV++ E+ L+++EQ+Y ++K++ +M+ Sbjct: 406 RARADTALEGLNTATAAVAESRAARQGVDIDAEMQRLLEIEQTYAANSKVLTTVVRMIDD 465 Query: 475 LLEGV 479 LL + Sbjct: 466 LLAAI 470 >gi|191168469|ref|ZP_03030257.1| flagellar hook-associated protein FlgK [Escherichia coli B7A] gi|190901488|gb|EDV61249.1| flagellar hook-associated protein FlgK [Escherichia coli B7A] Length = 547 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLIARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325 ++A +F+ + ++ G K Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASVVL 358 Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|238752861|ref|ZP_04614326.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380] gi|238708900|gb|EEQ01153.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380] Length = 452 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 62/479 (12%), Positives = 156/479 (32%), Gaps = 42/479 (8%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSEN 59 A + A + N+ N Y R+ + + V V + + Sbjct: 6 TALSGTKAAQAHLDATAMNVANMKTPGYSRQRAEQSALGASGVGAYAGNGVNVDGIKRIS 65 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + K +S Q + E + + + + S + +++ +L+ + Sbjct: 66 DHYLVKQEWQANSQSAYFNGKQRYLDKLESVVSTE--STSLSKGLNEFYAALDGATLIPD 123 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + +I+ A+ + N + + + + + I + S + N I Sbjct: 124 SLPQRQNIINRADALALRINNTNMTLSEQKQSIANQRASCIDQINVLTSAIADYNKKIVH 183 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + +++ +D RD + ++S +I +I + + + +G L ++ Sbjct: 184 LDSIGTNSNALIDNRDKKINELSTLIETRSIQAKDGSLSLSLKNGQPL-------VSGST 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S T + ++ V S + G++ +L ++ Q + +A L Sbjct: 237 AASITANVGRPGLNLNFVGTQSLIDMSC-GGQLGSLHDYETGILNSVQETIQNIANHLAT 295 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 F+ + + + E G+ + D + Q + ++ S Sbjct: 296 EFNRQLLLGTDLEGNTGVELFDFQSTNPKGILQVNAISLKQLALAGS------------- 342 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N G ++ +K F+ + N L + A + + + Sbjct: 343 ------GNGPGDNTNLHELIAIKDKPITFNGIQ----NTKLSDAAFGLLSDVGVASGRNK 392 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ V N + V+ EE L++ ++ Y + K++ D++ + LL Sbjct: 393 TELTAARDVLNQAIRERDSVSSVDKDEEAINLMEYQRVYQSNIKVVSTGDQLFRDLLAL 451 >gi|94969957|ref|YP_592005.1| flagellar hook-associated protein [Candidatus Koribacter versatilis Ellin345] gi|94552007|gb|ABF41931.1| Flagellar hook-associated protein [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 191 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 169/487 (34%), Gaps = 45/487 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 SL + A + NI N + Y R+ + + V Sbjct: 3 SLSGTLSIATRAMLAEQGAMQATTNNIANVNTPGYSRQIPIFSAVDPVVSGSTTYGNGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + +S + + L Q L ++ ++ A + +S +S+ Sbjct: 63 LRGYQSLRNRVLN--LRIAEEQQNQSALQSYVSSMDQVQVAFSDASGGIGGALSAFFNSI 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S L ++V+ +A +V F+T A + ++ D E++ +++ + R ++ Sbjct: 121 SQLSTQPDSTTLRQSVLSSANTLVNAFHTDASSLSSMQQGLDLEVKDQVNEVNRLTVQIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I D DQ D + ++S ++ +S + + T++G L Sbjct: 181 SLNGRISAMQKLHQDPGTLSDQLDQSVSELSNLLDVSVTQTEDGI-SLTTANGVALVVGD 239 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + T S ID + + KG + +L++RD VP Q+QLD Sbjct: 240 KSFGLTTAADPDTGLSRVQAGEID-------LTALLQKGSLGGVLRVRDEEVPSIQSQLD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A L + + + PG + ++ + + Sbjct: 293 KLAAGLSTAMNAVHQTGFDLNGNPGGLLFS-----------------APPSDGKNAAALI 335 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + AG + N N+ + N T ++ + + Sbjct: 336 SLAISDPAQLAMSGNGAAGDNTVANELLQIKNQAVV--------GNATPIDAYSQIVFNV 387 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + SD+ S + + + GV+L EE + L++ ++ + + L+ D+M Sbjct: 388 GSDISDAQAGLDTSTSLLQQLQDQRGALSGVSLDEETANLLQFQRGFEAAAHLVSVVDEM 447 Query: 472 LQTLLEG 478 +QT++ Sbjct: 448 MQTVIAM 454 >gi|193064539|ref|ZP_03045619.1| flagellar hook-associated protein FlgK [Escherichia coli E22] gi|194428412|ref|ZP_03060952.1| flagellar hook-associated protein FlgK [Escherichia coli B171] gi|260843322|ref|YP_003221100.1| flagellar hook-filament junction protein FlgK [Escherichia coli O103:H2 str. 12009] gi|192927791|gb|EDV82405.1| flagellar hook-associated protein FlgK [Escherichia coli E22] gi|194413464|gb|EDX29746.1| flagellar hook-associated protein FlgK [Escherichia coli B171] gi|257758469|dbj|BAI29966.1| flagellar hook-filament junction protein FlgK [Escherichia coli O103:H2 str. 12009] Length = 547 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325 ++A +F+ + ++ G K Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358 Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|120597311|ref|YP_961885.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] gi|120557404|gb|ABM23331.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] Length = 457 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 160/485 (32%), Gaps = 36/485 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ N ++ + + N+ NA Y R+ M + V Sbjct: 1 MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + L +SA+G ++ S+ E + N+ + + +L +L S Sbjct: 58 GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFG--ADGNNISKGLDQLFAALNS 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++V++ A+ V Q N + R + ++ + + L+ + Sbjct: 116 SMEQPNLIAYRQSVLNEAKAVAQRVNAINDNIDSQRNQINGQLGTSVKEINSQLAIIANF 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ + + D RD + ++ II I + + + + + G L Sbjct: 176 NRDIQAASVTGTIPPALQDGRDAAIDDLAAIIDIRVVEDSQGMLNISLARGEPLLTGNTA 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + I + +Q + G + ALL RD+ + Q +DE+ Sbjct: 236 AKLTSAPDPANPKNNLVSIQFGASQFNVDQTA---GGSLGALLNYRDTQLADSQAYIDEL 292 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A +L F+ + + + ++ + Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGQ------ 346 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + NK F + ++ +L E + +G L Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSSTSLAESFSSKVGQLGS 391 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + +++T GVN EE LI +QSY + K+I D++ Q Sbjct: 392 ASRQAISFAKTSVDLQKDAQVQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451 Query: 474 TLLEG 478 T+L Sbjct: 452 TMLSS 456 >gi|293395589|ref|ZP_06639872.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM 4582] gi|291421908|gb|EFE95154.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM 4582] Length = 549 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 77/552 (13%), Positives = 177/552 (32%), Gaps = 78/552 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N + Y R+ + + V Sbjct: 1 MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMGTMSGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + E L S G FE + ++ + N+ + + + Sbjct: 60 TVTSVNREYNQFITNQLRGAQSQAGAHD--AYFEKVSQIDNLLADKTNTLSSSMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D TV+ A +V FN + + ++ + + ++++ + + ++ Sbjct: 118 LQNLVSNAGDDASRNTVLGKANGLVNQFNNTDKYLRDMESGVNQQLSDSAVQINNYSQQI 177 Query: 171 TVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I S + + LDQRD L+ ++++I+G+ ++ + V ++G TL + Sbjct: 178 AKLNQDITRLRGSGGGEPNALLDQRDQLVSELNQIVGVQVTQQDGDAYSVSFANGLTLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S + + G S + G + +L+ R + +NQ Sbjct: 238 GNNAYQVEAMPSSQDPSR-LTLGYNRGSGASEIPQGQIVSGSVSGVLKFRSEALDSARNQ 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-------------------------- 323 L ++A + +F+++ + G Sbjct: 297 LGQIALAMADNFNQQHRAGFDINGDAGGDFFSFSGGRVVENTRNVGDATLGVSYTDTGKV 356 Query: 324 --------KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 D +N +S+ + ++ S + + + Sbjct: 357 QASDYRVEFDGNNWQVTRLSDNTPITASAGTDASGTPTLAFEGLQVSIDGNAQKNDSFTV 416 Query: 376 NHYCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARN 406 D + AG ++ TL + Sbjct: 417 KPVSDVAGSLKVAISDAGKIAAAGADDGGRGDNDNAKKLLDLQTRKLVDGKATLTGAYAS 476 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + + ++ + GVNL EE L++ +Q Y + ++I Sbjct: 477 LVSNVGNQTATAKSNSAAQGNIVKQLTVQQQSVSGVNLDEEYGELLRFQQYYMANAQVIQ 536 Query: 467 FTDKMLQTLLEG 478 + +L Sbjct: 537 TASSLFDAILSI 548 >gi|95928660|ref|ZP_01311407.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM 684] gi|95135450|gb|EAT17102.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM 684] Length = 465 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 79/487 (16%), Positives = 162/487 (33%), Gaps = 36/487 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVT 51 L+ N + + + N+ NA + Y R+ + SP Sbjct: 3 GLIGALNTGKTGLMVSQKGIEVTGNNLTNASTEGYSRQVLKVSSSPALEHNGIIVGHGAV 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + K L S G+Q + E ++ N I+ ++ Sbjct: 63 VTAIARQESVFVTKQLINKSGDYGEQAAMAEPLGELERIAGISDDN--LVADINAYFEAW 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ S S + + VI + + + F + ++ ++ + + I E+ + + ++ Sbjct: 121 QALSNEPSGTVERQEVIQMGKNIAKTFASMDADLNELTENINVSIAAEVDTINQMADQIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I A A+ D RD LLQ++SE++GI+T + + V S G L E Sbjct: 181 SLNLRIVSTEAGGTSANGLRDDRDQLLQELSELVGINTYEGGSGMVSVQLSSGLPLVEGG 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 S + + +D + G G+IK L+ +RD+ +P ++ LD Sbjct: 241 IAS-----SMSSSRVDGLTTLSLDMGATTVELGLDDFGGEIKGLMSVRDNEIPQVRDSLD 295 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L + + + PG+ + + L Sbjct: 296 RLAYTLANEVNAVHEAGVDLDGNPGVSFFSYSTSTAADAE-----------AWTGAAATL 344 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + +G + + T E+ + Sbjct: 345 AVAITQTDQVAAGATSSSGDNTNTLAMVALQDAEVV--------DGSTFNEFYSQIASKV 396 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + +Q + + VGV+ EEL L + + Y + + I ++M Sbjct: 397 GLAVDQNTYELETAQDALVQVQNMRDSAVGVSTDEELLLLTQYQTGYRAAAQYINAINEM 456 Query: 472 LQTLLEG 478 L T+L Sbjct: 457 LDTMLTM 463 >gi|119947171|ref|YP_944851.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37] gi|119865775|gb|ABM05252.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37] Length = 454 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 67/480 (13%), Positives = 155/480 (32%), Gaps = 34/480 (7%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSE 58 +++N A + + +NI NA+ + R+ + + V V + R Sbjct: 2 SIYNIALSGVSANRTALNITAQNIANANTAGHSRQQAVQSSITRSNDVGAGVEVSSIRRM 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 L + ++ +G S E + D +N + + + S+ S Sbjct: 62 ADQFIISQLRSSNTELGNSSYSASSLGQLEQIVGLDGFN--LSAGMDQFFSSISEASVAP 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + V+ +A+ + Q F ++ + A + E +S + L L + AI Sbjct: 120 ESVEFRQQVLSDAQALAQRFKGLSQTLSNQNAQLASDRENNLSMVNGLLDNLAQSSKAIM 179 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + D RD +L ++S++I ++ N ++ + T++G L Sbjct: 180 EVYNVGGNTATLEDNRDQMLNELSQLIKVNVNKEENGELQLSTNNGQPLLINDKAAEFTT 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +G + + G++ A+ + + + N ++EMA ++ Sbjct: 240 TPLPSDPYQAIINATFNGSTFNVSSD---LGGELGAIDKTQKKDLAALHNTINEMAVIVA 296 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 ++ + + + ++ + + + Sbjct: 297 DEVNKSLASGTDLNGLSPGLALFSYDPANPAGSMQMNLLSTDELAFSGDGNP-------- 348 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + D N+ L E S+G + + + Sbjct: 349 ---------------GDGQILANLLDISKTDFSITGAGNINLSEAFSLSVGKIAIDSRQA 393 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + +FN + S N GVN EE + L+ +Y + K+I ++M ++L Sbjct: 394 QQNLDSNTALFNQVQASRENLSGVNSDEEAANLMIYANAYEANMKVISTANQMFNSILRA 453 >gi|209967001|ref|YP_002299916.1| flagellar hook-associated protein FlgK, putative [Rhodospirillum centenum SW] gi|209960467|gb|ACJ01104.1| flagellar hook-associated protein FlgK, putative [Rhodospirillum centenum SW] Length = 526 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 82/521 (15%), Positives = 182/521 (34%), Gaps = 46/521 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + A + A++ +N N Y R+ + V Sbjct: 1 MSLSVAISSAISGLRATQNNIATVSQNTSNIQTPGYTRKFVTQEAQVHTPTTGGVRTGQV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L S + + + E + S + ++ LRD + Sbjct: 61 QRTFDQALYRELLQRESQAAHLETVSTTLSSIEKLQGSPESQTSISARLADLRDDFIGLA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 L V+++A+ + NT A + R++ I I + L+++ ++ Sbjct: 121 AKPESVELQADVVNSAQIFAASMNTVANAIIDKRSETQDAIVNTIDTVNGLLTDIAQLDR 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I ++ D D+RD+ ++ +++++ + + R + M++ T G TL + VP + Sbjct: 181 QIFQTQGTQQGTADLQDRRDLKIRDLAKLVDVVALERADGTMLLMTRGGATLLDRVPNYL 240 Query: 236 NFEKM-------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + PI + + + G++ LL++RD ++P Q Sbjct: 241 STSPSRIAASSYYDPSGAGGIAPIRLGDPNTGVDITQDLRGGQLGGLLELRDDILPRMQA 300 Query: 289 QLDEMARVLI---------GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +LDE+A ++ + + +++ V G D + + Sbjct: 301 ELDELAHMVAVRFKGKTAPDDGAPGLTLFTDTDGVSIPGDVSGSVDYAPPILYVGFASRI 360 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-------------------------GYPDL 374 Q + L G + + G + Sbjct: 361 RVGQAVMENAELVRYGDGGAPKVPPASGSSPPDPIAGSTIFLKNVVDHVFGTTTLGGSNH 420 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 I N + + I NV+L+++A++ + + ++ + + Sbjct: 421 IAFNTQGLGANPRRNLTSSIPANVSLIDFAQSVLVKQSSEAGWAKARATEATAMKEELDF 480 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 YS+ GVNL EE+ L +++SY S+++I ++M +L Sbjct: 481 RYSDKTGVNLDEEVVMLTVLQRSYAASSRVITTVEQMYDSL 521 >gi|114765248|ref|ZP_01444380.1| flagellar hook-associated protein K [Pelagibaca bermudensis HTCC2601] gi|114542383|gb|EAU45411.1| flagellar hook-associated protein K [Roseovarius sp. HTCC2601] Length = 470 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 91/481 (18%), Positives = 186/481 (38%), Gaps = 13/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-TVVTQRSEN 59 MSL+ N A++ + +S+ ++ NI NA+N +Y RR+T T + + V Sbjct: 1 MSLITALNAARSGMSTSSRWAETVSTNIANANNASYARRETQVTTNVQGAAQVSEITRAV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 D + +Q + + + D ++ ++ + SL + + + Sbjct: 61 DGALDAMYRGEVGRTAKQDAIAAGLESYTSLLGDTESTDTVLTRLTDFQSSLGLLAVSPA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + L + + +A+E+ Q N + + A I +++ + L ++ +++ + Sbjct: 121 DTALQRATVGDAQELTQALNRAGANLDAALDRAGDGISSDVAAVNSTLEKIAGLSERLAG 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + S D+ L +SE I +T + + ++T GT L + Sbjct: 181 QGQSADARLALQDELGAELDALSEYIDFTTRTDSKGRIEIFTGGGTALITGGEAETLSFD 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ +T+ I + +G + +++ +V+P ++QLDE+AR LI Sbjct: 241 TDTGILTAGEIEITPGVAGKRG-----ISEGSLSGKIELVTTVLPEMRSQLDEVARALID 295 Query: 300 SFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 D A + A + L IS V P+ + +RD Sbjct: 296 GMVAADASLAAGEAGLFTDNGAALSDPFEPGLASRISVNDAVVPESGGSLWRIRD----- 350 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + AG + + D+ + FD G+ N++L Y I R+ + Sbjct: 351 -GLGADAPGPAGDNTQVTAFLDTLDGAMNFDESLGLGDNMSLSSYISTLIASQNTTRASA 409 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S + +GVN+ +EL L ++QSYN + + + +ML TLL Sbjct: 410 ETSAESLAAGAIAVQSSRLSFMGVNVDDELQQLAAIQQSYNANAQTLSVVSEMLDTLLSA 469 Query: 479 V 479 + Sbjct: 470 I 470 >gi|261341488|ref|ZP_05969346.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus ATCC 35316] gi|288316284|gb|EFC55222.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus ATCC 35316] Length = 456 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 72/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A + A + NI NA Y R+ + + V V + Sbjct: 2 NMINIAWSGLQAAQFGMSVTSMNISNALTPGYSRQGIIQSSVVTMGQGGMSAGAGVQVES 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S + + + E + D + S + +L + Sbjct: 62 IRRVSDQYLTNQVWQSNSKASYYGINNQYLSSLEKVIGTD--STSLGTGLDDFFSALSAL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +K + + +++ A + FN + + + + + + + N Sbjct: 120 TKEPESEASRQQLLNQAGSLATRFNNMNDFINSQKTSVTNQRNTMVGQINSLTAGIADYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++ +++ DQRD L++++S + +N V +G L Sbjct: 180 KKIMEMDSTGGNSNVLRDQRDELVKQLSTYADVKVTEDSNGSYAVAMKNGQPLVSGKVAG 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 S ++ NP+ +S + G++ AL + Q+ + MA Sbjct: 240 EL-----SSSLDGNGNPVLSLNFSNTSFSLNPSTGGQLGALYDYETGELAQMQSSVQGMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + F+++ + PG + + Q + D Sbjct: 295 EAVATLFNDQLAKGFDKNGNPGKPLFTFDLKNPAGILQ------------------VNDL 336 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 N +L K G N++L E A I + Sbjct: 337 KQDELALSDNPDEQGNDGNLQE-----LIKIKNQKVDIGGMGNMSLNEGAAAIISNIGIA 391 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S +Q V + +N VN EE L Q+Y + K+I +++ Sbjct: 392 SKKSKSELEAAQGVLDQAQLQRNNLSAVNNDEEAINLQVYMQAYQSNVKVIATGNQIFND 451 Query: 475 LLEG 478 LL Sbjct: 452 LLGL 455 >gi|288962672|ref|YP_003452966.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] gi|288914938|dbj|BAI76422.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] Length = 465 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 101/484 (20%), Positives = 180/484 (37%), Gaps = 25/484 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MS+ A + QQ A + N+ NA YVRR+ + V V Sbjct: 1 MSVQLALTAALSGLRTTQQQAAMLSHNLANATTAGYVRRELDLSAVTTAGRGAGVRVDAV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + +S Q+ S A ++ S + +SKL+ + Sbjct: 61 ARKVDELLIRDARFETSRYTGQQARASALADYALVLGQPQDEKSVSTQLSKLQQAFSRLH 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++D V+ A + N +A+ Q + ADA ++ + + L ++ +N Sbjct: 121 DMPNDDAARNAVVSQASALADGLNRNAQAAQTVLADAKDRLQTSVDAVNGSLQRVSELNG 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I DA D D+RD LL ++S+ IGI T R + MVV T +G TL + Sbjct: 181 RIATLETRGGDAGDLRDERDRLLDQVSQEIGIRTYSREDGQMVVMTRNGQTLLDHPLA-- 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +T + +GV +S+ S + G+I +Q +P QLDE+A Sbjct: 239 ----PGEQPLTLVGGEVTANGVALSAKPDSEIQSGRIMGYVQTIKQDMPRALAQLDELAA 294 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L+ F +E P G++ I VN ++ ++ Sbjct: 295 GLVQGFQ-------GAEADPTKPGLFTDAGAAYGATAGLASRIAVNGVVKTESWRIQ--- 344 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 G I + F F + + TL YA + + R Sbjct: 345 ---SGVQAAAALKPGDQTQIEKFQAVFTAARGFTA-TDMPASATLGSYATAMVSAQQGYR 400 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + ++ + + + N GVN+ +E+ L+ +EQSY S +++ +M+ L Sbjct: 401 TGAESEMNARKISADTLESARINRDGVNIDDEMQKLLLIEQSYGASAQVVQVAGRMIDVL 460 Query: 476 LEGV 479 L+ Sbjct: 461 LQIK 464 >gi|296531743|ref|ZP_06894568.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] gi|296267926|gb|EFH13728.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] Length = 485 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 93/480 (19%), Positives = 176/480 (36%), Gaps = 5/480 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-----MTTISPENVTVVTQ 55 M++ A + A + +Q A + NI NA+ YVRRD + V Sbjct: 1 MTISAALSNALSSLAAEQRQAAILSNNIANANTPGYVRRDMPRSERLVAGIGSGVDTAIT 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++ L+ + S + + + ++ + S Sbjct: 61 QRLGDAALAAASRSADASEAYALQLKQGLETYNALIGQPSDQRSLSSRLGAFQTAMTTLS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + ++ A ++V + + V K RA+AD ++ E+ + L +L + Sbjct: 121 SAPDNAVAQSQALEAARDLVDALHDADAAVAKARAEADLQLSREVGAINSALDQLAETDR 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + +A ++ D+RD LL +I I I ++V + GT+L ++ Sbjct: 181 RMALASARGGSTAEYEDRRDTLLAEIGRKIPIRIFDNGPGHLLVMSDGGTSLLDSTVVHR 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + +P + V V G + L++RD+ +P F + LD++A Sbjct: 241 LNFTHTPVVQAEQRHPAALSAVTVEGQALRVTETGSMAGALRLRDTTLPNFIDMLDQVAV 300 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 LI SF + DP ++ D I + +P Sbjct: 301 RLIESFQDADPTLTGNQAGLFTDAGAANWDGSGGYASFIGMARKIAINAAVDPDQGGQLW 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + A I D+ N +D G+ ++TL + A SIG ++ R Sbjct: 361 RLRTGVNAVAQGNAADNTNIIAALDAMNVVRSYDSNTGLPASMTLSQAASQSIGLMQGER 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + D + + SN VN+ EEL L+ V+Q+Y+ S ++I +ML L Sbjct: 421 AVWSDRAETRGRLAAEARQELSNKTAVNVDEELQRLLLVQQTYSASVQIIQAATRMLDEL 480 >gi|260466602|ref|ZP_05812790.1| flagellar hook-associated protein FlgK [Mesorhizobium opportunistum WSM2075] gi|259029608|gb|EEW30896.1| flagellar hook-associated protein FlgK [Mesorhizobium opportunistum WSM2075] Length = 470 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 241/469 (51%), Gaps = 4/469 (0%) Query: 15 NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74 N ++Q + + RNI +A N +Y RR ++ T + V + ++ + SA Sbjct: 1 MNTARQTSVVSRNIADASNPDYTRRISVITSTAPGARFVDVQRAANDLLFRQNLGALSAY 60 Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 Q L S ++ +SP+ I+ L+ +L+ Y+ + S LG +VID A++V Sbjct: 61 SGQNALYSGMDQLDVSVNGVDNASSPSAAIANLQQALQLYATSPSNQNLGSSVIDAAKQV 120 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 V++ N ++ +Q R D +I+ + +L L + N A+ T S D D LDQR Sbjct: 121 VRSLNEGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDANQAVMSGTRSGTDVSDALDQR 180 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 D LL+KIS + IST R +NDMV+ T DGTTLFET+PR ++F Y + N ++I Sbjct: 181 DALLKKISNYVPISTFTRGDNDMVITTGDGTTLFETIPRTVSFTPAAGYAAGAAGNTVYI 240 Query: 255 DGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 D V +S+ G+ G + LLQ+RD V Q+QLDE AR LI +F+E P N+ Sbjct: 241 DNVPISAGTGGNTTASGTLAGLLQLRDGVASTMQSQLDETARGLITAFAETAPSMPNAAG 300 Query: 314 VPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 + A + L N L IS ++P NP+ LRDGG+ ++ N A Sbjct: 301 LFTWSGAPAVPAAGTLVNGLAGTISINAAMDPSVGGNPTLLRDGGANGLAYVANTTGGAS 360 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 Y +L+ Y D +K FD AGI+ ++ +YA NSIGWL+ R + + + Sbjct: 361 YSNLLIAYGDQLDKPMTFDSAAGISATSSVSDYAANSIGWLQSVRQQASTAADAKEALAQ 420 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ SN GVN+ +E+S ++ +E +Y S +++ D M+ LL V Sbjct: 421 RSADALSNATGVNIDQEMSLMLDLEHTYQASARMMKTVDDMMTALLSAV 469 >gi|157371201|ref|YP_001479190.1| flagellar hook-associated protein FlgK [Serratia proteamaculans 568] gi|157322965|gb|ABV42062.1| flagellar hook-associated protein FlgK [Serratia proteamaculans 568] Length = 548 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 80/551 (14%), Positives = 175/551 (31%), Gaps = 77/551 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N + Y R+ + + V Sbjct: 1 MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMSTMNGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + E L S G Q FE + ++ + N+ + + + Sbjct: 60 TVTSVNREYNQFITNQLRGAQSQAGAQN--AYFEKISQIDNLLASKTNTLSTNMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 LE+ N +D +TV+ A +V FN + + ++ + + ++++ + + + ++ Sbjct: 118 LENLVSNAGDDAARQTVLGKANGLVNQFNNTDKYLRDMDSGVNQQLSDSATQINSYSQQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I S + + LDQRD L+ ++++++G+ ++ + V ++G TL + Sbjct: 178 AKLNDEITRLRGSGGEPNALLDQRDQLVTELNQVVGVQVTQQDGDAYTVSFANGLTLVQG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + G VS + G + +L+ R + +NQL Sbjct: 238 NNAYQVEAIPSSGDPAR-LTIGYNRGNGVSEVPEGQITSGSVSGVLKFRTESLDGARNQL 296 Query: 291 DEMARVLIGSFSEKDPIA----------------------------------GNSENVPG 316 ++A + SF+++ Sbjct: 297 GQLALAMADSFNQQHRAGFDLNGDAGTDFFNFGGGRVVDNSRNTGDAALSVSYTDTGKVK 356 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 D N + + + VN ++ K + Sbjct: 357 ANDYRVEFDGSNWQVSRLPDNVKVNATAGTDADGKATLSFDGLKVGIEGNAQKNDSFTVK 416 Query: 377 HYCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNS 407 D + + ++ T + Sbjct: 417 PVSDVAGSLKVAITNSSNIAAAGKDDSGRGDNENAKKLLDLQTKKLVDGKATFSGAYASM 476 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + ++ + GVNL EE L++ +Q Y + ++I Sbjct: 477 VSSVGNQTASAKVSVTSQNNIVKQLTIQQQSASGVNLDEEYGELLRFQQYYMANAQVIQT 536 Query: 468 TDKMLQTLLEG 478 M LL Sbjct: 537 ASSMFDALLNI 547 >gi|330501143|ref|YP_004378012.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] gi|328915429|gb|AEB56260.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] Length = 455 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 67/486 (13%), Positives = 146/486 (30%), Gaps = 40/486 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53 MS+L A + + A+ +NI N + R T+T + Sbjct: 1 MSILN--QIAYSGVRASQVALATTGQNIANVKTPGFSRLQTITGSLAGQGGLSVGGGVEV 58 Query: 54 -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + R ++ L ++ Q + E + +S + + + +L Sbjct: 59 ISIRRMTNEFHNQQLWRATTEQNFYSASQQYLTALEALM--SGTGSSISAGLDQFFAALS 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S L + +I A + Q FN + + ++ + + + + Sbjct: 117 EASATPGSIALRQQIIGEAGNLAQRFNGLSSNIDAQVKALQEQRTAMATEINGLTENIAL 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + K D+ DQR+ L+ ++++ + + + V ++G L Sbjct: 177 LNKKIVETESVKGDSTALRDQRESLIGQLTQFAKLRINETPDGSVSVALANGQPLVAGAT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 M + S + + S G L + + L + Sbjct: 237 AGQLKVAMTA----SGEQEVSLAFAGTSFPLRQDGFGGAFGGLHDVEYGSLRPNLEALHD 292 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA L ++ + PG + L + T Sbjct: 293 MASQLAQMVNDVLATGFDLNGNPGQPLFAYDPTSTTALLRVEPLTAEQLA---------- 342 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 L + G +++ N+ + + VTL + +G + Sbjct: 343 ---------LSSAAGETGNNEVLLSLLGLKNQTITLN-----GSQVTLNDAYAGLLGQVA 388 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N + + V + V+L EE L+ +Q+Y + K+I +++ Sbjct: 389 SNSRQNQADLKSATAVTQQAQSQRDSVSAVSLDEEAVNLMTYQQAYQANMKVISTANQLF 448 Query: 473 QTLLEG 478 +L Sbjct: 449 DDMLSA 454 >gi|325289235|ref|YP_004265416.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] gi|324964636|gb|ADY55415.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus DSM 8271] Length = 512 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 73/515 (14%), Positives = 169/515 (32%), Gaps = 42/515 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M+ + +I NI NA Y R+ S Sbjct: 1 MNSFFGLTVGLKGLTASQAALNTINHNISNAGTTGYSRQVVAQKASRALAAANGAGMVGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + T D+ ++ G+ ++ S + + + + + +S Sbjct: 61 GVDITTIVQIRNVFLDRRYWQENAQYGEWQVKSSSLSELQSLLSSSSTD-GLDDALSSFV 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +LE + + S+D +V AE N A ++ +R++A+ ++ ++ + Sbjct: 120 SALEDLAGDPSDDSARSSVKAEAEAFCTYLNNMASTLEDLRSEANSAVKTKVDEINSLAG 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV---------RNNNDMVV 219 ++ +N I + A+D DQR VL+ ++SEI I + + + Sbjct: 180 RISALNQQIYKAELTGGTANDLRDQRTVLVDQLSEIASIEVSETAVGTLADGQEDLRFSI 239 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTS---------ESNPIFIDGVVVSSNQGSAVPKG 270 + + + + + ++ + + N + G + + A G Sbjct: 240 KINGVSLVNHFSVKKLECSAISDGSASDGLYEVRWAETGNEVTFTGGEIKGDLDMAGGDG 299 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + A +P + QL+ A+ L +F+E G + + Sbjct: 300 QDGAF-----KGIPYYLGQLNTFAQTLAKAFNEGVYADGETYGSGHAGGVGLDDGTGIRF 354 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN------VKNLAGYPDLINHYCDSFNK 384 + ++ + + + + L + A + + Sbjct: 355 FSYDGLSSEELMAGGTDLASIYGKITAANISLSAEVENDPGQIAASSVSGETENSANLTE 414 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +G+ N + E+ + S + + + + I + + GV+L Sbjct: 415 LIAMFSDSGVFANGSPEEFINAIYTTIGVETSLAGRISTLHENIAAQIDTNRTAVAGVSL 474 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE S LIK + +YN + K++ D++L + + Sbjct: 475 DEETSNLIKYQLAYNAAAKVMSVMDEVLDVTINSL 509 >gi|188995967|ref|YP_001930218.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium sp. YO3AOP1] gi|188931034|gb|ACD65664.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium sp. YO3AOP1] Length = 475 Score = 189 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 170/482 (35%), Gaps = 13/482 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MSLLA + A + S +NI N + Y + + P V + Sbjct: 1 MSLLASLSIAGQSLLTFQRGINSTNKNISNVTTEGYNKETPVFQDLPKSGVYLNKIIRAF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + ++ + E + +D + ++ +S+ Sbjct: 61 DQSLFNRSISLNQSVNSDKSYSGILDNIEDVF-NDALGGGFSDTLNTFFNSINDMLIKPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + I NA+ +V +S + ++ ++ ++ +I+ + + +L +N+ IK Sbjct: 120 DLAARSQFIANAKVLVGKIRSSNKALEDLKQQTVLKVRDQINQINQITEQLAKLNNLIKT 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 KT +++L++RD L+ ++S +I + +N + V+T+ G L + Sbjct: 180 KTLDVESNNEYLNERDRLITQLSNLIDTKVVFNEDNTVNVFTAKGFGLVVGMTNTQL--- 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + ++ + G +K + I N+L++ A VL Sbjct: 237 QFETDSNGNAIIKWNNTNDITKEIQNGELGGNLKGIDAINGQ-----LNRLNDFATVLAN 291 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK--LCQGISETICVNPQYRSNPSFLRDGGSV 357 F++ + GL + I I Q + Sbjct: 292 VFNKVHSQGYGLDGSTGLNFFGIDPNSSLSKIDASNIIVAIDDPKQVALATNNAYLNSDN 351 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN-SIGWLEKNRS 416 + + L + + I N EY + + + S Sbjct: 352 TNGKNLLALKDSINGVLTPTEETALKSSLNDPNNYDIIKNSKFSEYYNSQLVAIISSESS 411 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +Q +++ I+E + GVN+ EEL L K+++SY + ++I TD+++QT+L Sbjct: 412 RIKTQMKNNQFLYDAITEKMKSLTGVNMDEELINLTKLQRSYQAAARIITVTDELMQTIL 471 Query: 477 EG 478 Sbjct: 472 NI 473 >gi|311280011|ref|YP_003942242.1| flagellar hook-associated protein FlgK [Enterobacter cloacae SCF1] gi|308749206|gb|ADO48958.1| flagellar hook-associated protein FlgK [Enterobacter cloacae SCF1] Length = 547 Score = 189 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 81/548 (14%), Positives = 177/548 (32%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + A ++ NI + + Y R+ T+ S VTV Sbjct: 1 MSSLINSAMSGLGAAQAALNTVSNNIASYNVSGYTRQTTVLAQSNSTLGPGGWVGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + +D NS + + SL+ Sbjct: 61 TGVQREYNAFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSLSATLQDFFSSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + ++V+ A+ +V F + + ++ + + + + + ++ Sbjct: 119 TLVSNAEDPAARQSVLGKADGLVNQFKVTDQYLRDQDKQVNSAVASSVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDKISKLTGVGAGASPNDLLDQRDQLVSQLNQIVGVEVNVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + + G + LL R + +N L Sbjct: 239 STAHQLAAVPSSADPSRTTVAYVDNVAGNVEIPEKLLTTGSLGGLLTFRSQDLDQTRNSL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG---------------------------- 322 ++MA +F+++ ++ PG D Sbjct: 299 NQMALAFADAFNQQHAKGVDANGDPGSKFFDIGSPSVLKNTKNTGTANLGATVTDSSKVQ 358 Query: 323 ------IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 D N +++ V P ++ S DG +VS N + + N Sbjct: 359 ATDYNVSWDGSNWQVTRLADNTKVTPTVEADGSLSFDGLNVSVSGTANKNDSFTVKPVAN 418 Query: 377 HYCDSFNKNFIFDPVAG--------------------------INTNVTLLEYARNSIGW 410 + +A + N T+ + + + Sbjct: 419 TIVNMDVAITDETQIAMGINDGKSGESDNRNGQALLDLQNSKLVGGNKTVNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S V +++ + GVNL EE L +Q Y + +++ Sbjct: 479 VGNKTSTLKVSSTTQGNVVTQLTKQQQSISGVNLDEEYGNLQLFQQYYLANAQVLQTAST 538 Query: 471 MLQTLLEG 478 + LL Sbjct: 539 LFDALLNI 546 >gi|238799422|ref|ZP_04642851.1| hypothetical protein ymoll0001_16400 [Yersinia mollaretii ATCC 43969] gi|238716726|gb|EEQ08613.1| hypothetical protein ymoll0001_16400 [Yersinia mollaretii ATCC 43969] Length = 549 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 76/550 (13%), Positives = 174/550 (31%), Gaps = 80/550 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N A + + A +++ NI N Y R++ + + VTV Sbjct: 1 MNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFIGNGVTVTGVN 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 E + L SS L ++ + ++ + + +N+ + + +L++ Sbjct: 61 REYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSVTMQDFFSNLQNLVS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N +D KTV+ AE +V F + + ++ + +++I ++ + + ++ +ND Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTKINNYSEQIAKLNDQ 178 Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I +S + + LDQRD L+ ++++I+G++ ++ + V ++G L + Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVAFANGLPLVQGSSSHK 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +S T + V S + G + L+ R + +NQL ++A Sbjct: 239 IEAIASSSDATRLAIGYKYGSGDVMEVDESRLATGSLGGTLKFRSEALDSARNQLGQLAL 298 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADG--------------------------------- 322 + SF+ + + PG Sbjct: 299 AMADSFNTQHKAGFDINGDPGDDFFSFAQPNVLKNSNNQGDASLTVKYTDTSKVKASDYS 358 Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 +L + + L G + L+ Sbjct: 359 VEFDGTDWQVTRLSDNTKVPANPVKDVNGDTTGLSFDGLDVSIDNGTGGAQSKDKFLVKT 418 Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408 + + + +++ TL + Sbjct: 419 VSNVAANLQVAVTDSSKIAAAGTADGGASDNVNAKALLDLQTKKLVDSKATLSGAYAGLV 478 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + ++ + GVNL EE L + +Q Y + ++I Sbjct: 479 SNVGNQTNTAKTNSAAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTA 538 Query: 469 DKMLQTLLEG 478 + LL+ Sbjct: 539 STLFNALLDL 548 >gi|218135314|ref|ZP_03464118.1| hypothetical protein BACPEC_03219 [Bacteroides pectinophilus ATCC 43243] gi|217990699|gb|EEC56710.1| hypothetical protein BACPEC_03219 [Bacteroides pectinophilus ATCC 43243] Length = 512 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 80/508 (15%), Positives = 184/508 (36%), Gaps = 32/508 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49 S N A AS + N+ N + K Y R+ T + + Sbjct: 3 STFFGLNIAYTGLQAASVSINTTAHNVSNVNTKGYSRQQTDVSADNALRTYAKYGTAGSG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + + + +D ++ + G +Q++ E +++ T + Sbjct: 63 VIVNSIQQVRDSYYDVKYRSNETNYGYYNTMQTYMTQLEDYL-NEYTLEGFTKAYADFFQ 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + +E+ + I+ A+ + FNT + ++ ++ D ++EI + + + Sbjct: 122 SAIQLQEQPAEESVRNQFINKAQSLADYFNTLSSNLKNVQKDTNEEIGNRVDKINTISTS 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR----NNNDMVVYTSDGT 225 + +N I A+ A+D D R+ LL ++S+I+ I T N N VY + Sbjct: 182 IASLNKQINQIEANHGTANDLRDARNNLLDELSQIVNIETTETPVGVNTNCFKVYINGQV 241 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDG--VVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + + S+++ ++ +S + S+ G +KAL++ RD Sbjct: 242 LVDNNNSNKLMVTAKENPRNASDADGLYQITWESGMSFGEYSSTLNGSLKALIEARDGCN 301 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI------------ADGIKDLDNKLC 331 + Q + + N + VP + + N Sbjct: 302 GEIEKQTTDANGNPVLETEGVSVNNTNFKGVPYYQSKLNEFVQIFTTAVNDVLAGPNART 361 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD-LINHYCDSFNKNFIFDP 390 + I + + + +V+ + + + LA D + ++ + Sbjct: 362 INGEKGIPLFVSKYEDSAMSASSITVNNELVLDQSKLATTTDENKGESYNDLVESILELR 421 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + N T + + +G + + S + + + + + +GV+ EE Sbjct: 422 DKKMYGNGTGGYFLESIMGDVAIDSSKATQFNKNFTNLKTTVQNQRLSVMGVDQDEEGMD 481 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L+K +++YN+S K++ +++ L+ G Sbjct: 482 LMKYQEAYNLSAKMMSVMNEIYDRLING 509 >gi|237757071|ref|ZP_04585515.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium yellowstonense SS-5] gi|237690770|gb|EEP59934.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium yellowstonense SS-5] Length = 475 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 81/482 (16%), Positives = 180/482 (37%), Gaps = 13/482 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MSLLA + A + S +NI NA + Y + + P V + Sbjct: 1 MSLLASLSIAGQSLLTFQRGINSTNKNISNATTEGYNKETPVFQDLPKSGVYLNKIIRAF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + ++ + E + +D + + ++ +S+ Sbjct: 61 DQSLFNRSISLNQSVNSDKSYSGILNNIEDVF-NDALGSGFSDALNTFFNSINDMLIKPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + I NA+ +V +S + ++ ++ ++ +I+ + + +L +N+ IK Sbjct: 120 DLATRSQFIANAKVLVGKIRSSDKALEDLKQQTVLKVRDQINQINQITEQLAKLNNLIKT 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 KT ++++L++RD L+ ++S +I + +N + V+T+ G L + Sbjct: 180 KTLDVESSNEYLNERDRLITQLSNLIDTKVVFNEDNTVNVFTAKGFGLVVGITNTQL--- 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++SN + +++ + G++ L+ D++ N+L++ A VL Sbjct: 237 ----QFETDSNGNAVIKWNNTNDITKEIQNGELGGNLKAIDAINGQL-NRLNDFATVLAN 291 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK--LCQGISETICVNPQYRSNPSFLRDGGSV 357 F++ + GL + I I Q + Sbjct: 292 VFNKVHSQGYGLDGSTGLNFFGIDPNSSLSKIDASNIIVAIEDPKQVALATNTAYLNSDN 351 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN-SIGWLEKNRS 416 + + L + + + I N EY + + + S Sbjct: 352 TNGKNLLALKDSIGGVLTSTEETALKSSLNDPNNYDIIKNSKFSEYYNSQLVAIISSESS 411 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +Q +++ I+E + GVN+ EEL L K+++SY + ++I TD+++QT+L Sbjct: 412 RIKTQMENNQFLYDAITEKMKSLTGVNMDEELINLTKLQRSYQAAARIITVTDELMQTIL 471 Query: 477 EG 478 Sbjct: 472 NI 473 >gi|323163692|gb|EFZ49513.1| flagellar hook-associated protein FlgK [Escherichia coli E128010] Length = 547 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325 ++A +F+ + ++ G K Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358 Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + + + + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQALQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|126734126|ref|ZP_01749873.1| flagellar hook-associated protein FlgK [Roseobacter sp. CCS2] gi|126716992|gb|EBA13856.1| flagellar hook-associated protein FlgK [Roseobacter sp. CCS2] Length = 480 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 94/490 (19%), Positives = 174/490 (35%), Gaps = 24/490 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRS 57 + + N A S+ + N+ NA + Y RR + V V + Sbjct: 1 MSSALNNAVTGLTATSRMAEVVSSNLSNALTEGYGRRGVELSSVQVGGRGGGVRVDSINR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 +A+ Q E +++ +L + + Sbjct: 61 FVDAGLLADRRLADAALSGQERSVDLVMRLEQAIGGPDDAAGLGARLAEFERALIAAGSD 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + ++ +V+ E V + VQ +R DAD I +I L L ++ +N I Sbjct: 121 PASELRLASVVARLEGVAGTLKANTASVQALRQDADVAIARDIDVLNGALQQVDALNKDI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + S D LD R + +I+ I+ + + R+N + + T+ GTTL ++ PR+ F Sbjct: 181 LRISGSGDDPSALLDARQRAVDQIAGIVPVREMPRDNGSIGLMTTSGTTLLDSRPREFGF 240 Query: 238 EKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQLD 291 + + T I +DGV + G G + A +RD + Q+ LD Sbjct: 241 QNTLTITADMTLASGALGAIKLDGVALDLATGVGRLDGGTLGAAFVLRDQTLVQAQSALD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNP 348 + L+ F + GL G + L IS + P N Sbjct: 301 GITADLVARFQDSTNDPSLMPGDIGLLTDQGNPLDLSDLSGLAGRISVNPAIVPAQGGNL 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + LRD G IN + + + + P A + + + + Sbjct: 361 ALLRD------GLNATTPGPTGDAAQINRWIAALDTPRMDVPGATLASASGRIAAY---V 411 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + R + + + + + E+ G++ EL L+++EQ+Y + K+I Sbjct: 412 SEVGTTRLMAQEQLSFTTARWETLREAELAD-GIDTDVELQRLLQIEQAYAANAKVIQTV 470 Query: 469 DKMLQTLLEG 478 D M+Q L+E Sbjct: 471 DFMMQRLMEL 480 >gi|259417223|ref|ZP_05741142.1| flagellar hook-associated protein FlgK [Silicibacter sp. TrichCH4B] gi|259346129|gb|EEW57943.1| flagellar hook-associated protein FlgK [Silicibacter sp. TrichCH4B] Length = 482 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 171/486 (35%), Gaps = 12/486 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSE 58 MSL + A A + + + N+ NA + Y RR + + V + + + Sbjct: 1 MSLSTALSSAMTGITAAGRSTSVVSDNLANALTEGYYRRTLDLSSNGSAGGVRIGSVQRM 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 K + + + + F A + + S ++ + +L + Sbjct: 61 IDPAIQKSVRSAEANFAATSVTAGFYARISDQVGTVNDDYSIAQRMTDMETALIEATSLP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 D + A E+ + +A V +R A+ I + L+ L L +N I Sbjct: 121 DSDARLNDLSMQAGELAMSIRNAAEGVSTLRNKAEDSIGALVEGLQTNLETLNDLNKKIL 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE-TVPRDINF 237 D DQRD L+ I+E+I + R+NN +YT+ G L + + +F Sbjct: 181 AAEIRGQDPSGLEDQRDNLINAINEVIPVQVHKRDNNQTALYTNSGIKLIDGGSVAEFSF 240 Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ T + + + IDG + ++ + G + A +RD Q LD Sbjct: 241 DETRLVTPYMSIDNGQLSGLEIDGRSIDTSINGKIGGGSLAAQFHVRDVASVQAQEDLDT 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA LIG F + PG+F G + + + S Sbjct: 301 MAADLIGRFQDPAVDPTLGATDPGIFTDAGAFFDPVNT---LGAANRIELNEVISMSGSA 357 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + G ++N+Y ++ + + + A N + Sbjct: 358 ETWRLRDGLNATAIGDRGDTTILNNYAEAMEATNTITSPGLGSGDYSAYAIAANLMTNFT 417 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + S +++ I GV+ EL L+ +E Y + +++ D+M+ Sbjct: 418 QENTWAEQELAYSSAIYSDIQSRELEQ-GVDTDAELQTLMMIETVYGANARMLQAIDEMM 476 Query: 473 QTLLEG 478 Q L+ Sbjct: 477 QELMRL 482 >gi|295096219|emb|CBK85309.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 546 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 74/547 (13%), Positives = 167/547 (30%), Gaps = 73/547 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI + + Y R+ T+ S V V Sbjct: 1 MSSLINSAMSGLSAAQSALNTVSNNISSYNVAGYTRQTTILGASNSTLTGGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + +D NS + + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSLSANLQDFFKSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +TV+ A+ +V F T+ + ++ A + I + + + ++ Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKTNDQYLRDQDAQVNTAISTSVDQINNYAKQIAN 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V+++ + ++G TL + Sbjct: 179 LNDQISRLTGVGAGASPNELLDQRDQLVSELNKIVGVDVTVQDSGTYNISIANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + G + LL R + +N L Sbjct: 239 SNASQLAAVKSSADPARTTIAYVDAAAGNVEISEKQITTGSLGGLLTFRSQDLDQARNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG---------------IKDLDNKLCQGIS 335 ++MA + + + ++ G + D + Sbjct: 299 NQMALAFADAMNTQHQAGFDANGDAGGKLFDFGSPAVLSNGKNTGSASVTATMTDSTKVQ 358 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD------ 389 T ++ + R + S + + L S + F Sbjct: 359 ATNYKVEYNGTDWTITRLSDNTSFTAKPDASGNLSFDGLNVKISGSADNKDSFIVKPVND 418 Query: 390 --------------------------------------PVAGINTNVTLLEYARNSIGWL 411 + N T + + + Sbjct: 419 VIVNMDVAISDESKLAMASAKGNGESDNTNGQKLLDLQSAKLVGGNKTFNDAYAALVSTV 478 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V +++ + GVNL EE L + +Q Y + +++ + Sbjct: 479 GSTTASLKTSSETKVNVVTQLTKQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTASTL 538 Query: 472 LQTLLEG 478 L+ Sbjct: 539 FDALINI 545 >gi|150019110|ref|YP_001311364.1| flagellar hook-associated protein FlgK [Clostridium beijerinckii NCIMB 8052] gi|149905575|gb|ABR36408.1| flagellar hook-associated protein FlgK [Clostridium beijerinckii NCIMB 8052] Length = 583 Score = 187 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 82/584 (14%), Positives = 174/584 (29%), Gaps = 106/584 (18%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L F A+ N + NI NA Y R+ + + Sbjct: 1 MSGLFDTFTIAKRGLNVQQGNINTTSHNISNASTTGYSRQRAVVQTTRPFGGTSRFDSCS 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + T + D + S G+ S+ E + ++ + Sbjct: 61 AGQVGTGAEITTIQRIRDVFKDYQVRTQKSDNGKLETKNSYLTQVEDIL-NETSDTGIQQ 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 +S +S S + ++ + A+ + N ++ ++DA ++ ++++ Sbjct: 120 ALSDFYKGFQSLSLDPTKSSNRTVALQQAQTLASALNNRYTQLDTKKSDAQGTMQTDVTD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L ++ +N I +A +D +D+RD LL +S GI+T N M V +S Sbjct: 180 INSILDQIKDLNQQIAGVSAIGMTPNDLMDKRDNLLDDLSTKFGITTKRENYEAMDVSSS 239 Query: 223 -----------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-- 269 DG L ++ + + + + + + + Sbjct: 240 ELSSPTIGMLVDGNDLTGKNCNRFSYVESATLDTSGNLTVTYSVLGDKKNIKTLTISGAD 299 Query: 270 ----------------------------------------GKIKALLQIRDSVVPIFQNQ 289 G+I ++ + +Q Sbjct: 300 EALKNEVLEKRILIADKSGIVTPAPTDKASIEKSLFKVEKGEIGGKQAVQ-KDIQTCMDQ 358 Query: 290 LDEMARVLIGSFSEKDPIAGNSE--------NVPGLFIADGIKDLDNKLCQGISETICVN 341 LD+ A L + + + ++ N P + ++ I VN Sbjct: 359 LDKFAAGLAYAVNAIQTGSTDAASSNSNLKYNDPIFVTSASNGTGAATDIGINAKNITVN 418 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLA-------------------------GYPDLIN 376 ++PS L G + + A + Sbjct: 419 SVLNTDPSKLNCGETSTDVSGDKAGTRALAIASIKEIKMDLDKIDVTSNSTRKDFFTNTA 478 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + ++ TL Y ++ I L S+ Sbjct: 479 TTGSQLTLDASALKLNSSSSGATLDNYYKSVISNLATVTKGVTSDLSISEKQLETYENDR 538 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GV++ EE + LI+ + +Y + K+I D++L ++ G+K Sbjct: 539 LSESGVSIDEETTNLIQFQHAYQANAKVISTVDELLDVVINGLK 582 >gi|99082780|ref|YP_614934.1| flagellar hook-associated protein FlgK [Ruegeria sp. TM1040] gi|99039060|gb|ABF65672.1| Flagellar hook-associated protein 1 (HAP1) [Ruegeria sp. TM1040] Length = 482 Score = 187 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 170/486 (34%), Gaps = 12/486 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSE 58 MSL + A AS+ + I N+ NA ++ Y RR + + V + + + Sbjct: 1 MSLSTALSSAMTGITAASRSTSVISDNLANALSEGYYRRTLDLSSNGAAGGVRIGSVQRM 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 K + + + + F A + S ++ + +L + Sbjct: 61 IDPAIQKSVRSAEANYAATSVTAGFYARVSEQVGTVNDAYSIAQRMTDMETALIEATSLP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 D + A E+ + +A V +R A+ I + L L L +N I Sbjct: 121 DSDARLNDLSMQAGELAMSIRDAAEGVSSLRNKAEDSIAALVQGLETNLETLNDLNRKIL 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE-TVPRDINF 237 D DQRD L+ I+E+I + R+NN +YT+ G L + + +F Sbjct: 181 AAEVRGQDPSGLEDQRDSLIDAINEVIPVQVHKRDNNQTALYTNSGIKLIDGGSVAEFSF 240 Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ T + + + IDG + ++ + G + A +RD Q LD Sbjct: 241 DETRLVTPYMTLGNGQLSGLEIDGKQIDTSINGKIGGGSLAAQFHVRDVASVQAQEDLDT 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA LI F + PG+F G + + + S Sbjct: 301 MAADLIQRFQDPAVDPTLGATDPGIFTDQGAFFDPVNT---LGVANRIELNSIISMSGSA 357 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + G ++N+Y ++ + + + A N + Sbjct: 358 ETWRLRDGLNATAIGERGDTTILNNYAEAMEATNTITSPGLGSGDYSAYAIAANLMTNFT 417 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + S +F+ I GV+ EL L+ VE Y + ++I D+M+ Sbjct: 418 QENTWAEQELAYSSAIFSDIQSRELEQ-GVDTDSELQTLMMVETIYAANARMIQAIDEMM 476 Query: 473 QTLLEG 478 Q L+ Sbjct: 477 QELMRL 482 >gi|254255092|ref|ZP_04948409.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158] gi|124899737|gb|EAY71580.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158] Length = 446 Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 62/475 (13%), Positives = 141/475 (29%), Gaps = 32/475 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMF 63 + + + A RN N Y R+ T V + Sbjct: 2 NIMHIGLSGTLAAQAGLNVAARNTANLLTPGYTRQGVHLTSRVGGGVDATSLVRFADQYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + A ++ G+ + +S E + + S I K +L S +++ L Sbjct: 62 TQQKWASNAPYGRYSVTESHYKQLEGVMGL--GDGSVKAGIDKFFGALSEVSADVTNSTL 119 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + VI A+ + ++ N ++ ++ + + +N I +++ Sbjct: 120 RRQVIHAADGLAKSMNALQSALRTQLDGTRQQSAATAQEINALAGSIADLNREIANASSA 179 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + +D+RD + ++S + + + R N + V + G L ++ Sbjct: 180 GVTPSELVDRRDEAIDRLSALADVRVVTRANGTVDVDLAGGLPLVSGS----ETATLDVA 235 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + + + + G + L + D V+ + +A L + Sbjct: 236 AQPDGTFSLSLAFADTTYPLDGTKIGGALGGLFEFVDDVLIPQTTAIRALAGELAERINA 295 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + PG + + + L Sbjct: 296 QLSAGYGMNGEPGKPLFNVDPATGELH-----------------VNALAPDELGFSADPA 338 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 N A LI+ S + V L + +G + + + Sbjct: 339 EPGNSANLTKLIDLQRASIDLPGF--------GEVALGDAYTMLVGKVGSQSQQNQTMLA 390 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V ++ T GVN+ EE + + Q+Y+ + K+I +++ L Sbjct: 391 MAADVRKQSEAAWLATSGVNMDEEAVNIAEFMQTYSANMKVISVANQLFDVTLAS 445 >gi|258513988|ref|YP_003190210.1| flagellar hook-associated protein FlgK [Desulfotomaculum acetoxidans DSM 771] gi|257777693|gb|ACV61587.1| flagellar hook-associated protein FlgK [Desulfotomaculum acetoxidans DSM 771] Length = 430 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 65/492 (13%), Positives = 152/492 (30%), Gaps = 74/492 (15%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS + N+ NA+ Y R+ Sbjct: 1 MSGTFFGLEIGKRALQANKTGMDVTGNNVANANTTGYSRQRVNLVTGPPYTGSGYQLGTG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V N D + ++ S IG Q Q+ E + N Y++ + Sbjct: 61 VNVGDIERIRNNYIDGQVRSNLSQIGYQEKEQNVLQKVEALF-PYSVNEGMQVYLNDFFN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + ++N + + V++ + + N S ++ IR D D E +S + + Sbjct: 120 GWQEVNENPLDKGIQAGVLEKGKALAAAMNQSYEQLGIIRKDVDTEHTDLVSQVGKLTER 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-DGTTLF 228 + VN++I A ++ +LL ++++++ I + N+N +V S +G L Sbjct: 180 IVKVNESIAKSHAENNNVLLDERD--LLLDRLAKLVKIDATMNNDNKALVDVSVNGVALI 237 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N ++ V + G + ++ Sbjct: 238 TGTANNFNAANFDTPDVGGSVGSLINTGS------------------------RIDNYKE 273 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +L+++A + + + Sbjct: 274 KLEKLANAIAEEINGLYT-----------------------------GEGKFFKDLSNAS 304 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + N + + D Y ++ + Sbjct: 305 DSKTLNNNKIIELDDNASVDPQIALEAAQLRNKKIDSLGEDEGITF------ESYYQDLM 358 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + L + + + + + GV+++EE++ L++ + Y ++K+I Sbjct: 359 VTIGEESNSAGQLLETYEAIGDQLFAQRESVSGVSIEEEMTNLLQYQYGYQAASKIITTI 418 Query: 469 DKMLQTLLEGVK 480 D+ML+TLL ++ Sbjct: 419 DQMLETLLGIIR 430 >gi|323137000|ref|ZP_08072080.1| flagellar hook-associated protein FlgK [Methylocystis sp. ATCC 49242] gi|322397761|gb|EFY00283.1| flagellar hook-associated protein FlgK [Methylocystis sp. ATCC 49242] Length = 490 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 140/490 (28%), Positives = 231/490 (47%), Gaps = 10/490 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSEN 59 M+L A S Q + + RNI NA + + +P + Sbjct: 1 MTLTNASIIAGQSLGTISSQISVVSRNISNAGRPGVNAKYSQIATAPNGSAEFLGVGRMA 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + + ++A G + + + ++ + SP I++L +L++YS Sbjct: 61 NVALFRSMLSATAAQGSAAQISDALDQIDRALNLSNPAQSRSPASMITRLTTALQNYSAA 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + + A +VV + N + + Q IR AD++I + ++ L++ + +N I Sbjct: 121 PDNETAAELALAAARDVVASLNDATKTNQGIRRQADEDIASSVKDVNDILAKFSALNREI 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 TA+ D D LDQRD LL ++S IG++T+ R NNDMV+YT G TLFET PR + F Sbjct: 181 VEGTAAGADITDQLDQRDALLTQLSNEIGVTTVTRPNNDMVIYTDSGVTLFETTPRSVTF 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + T E ++IDGV V+ ++ A+ G I Q+RD P FQ QLDE+AR Sbjct: 241 QPTPTLTAGVEGAAVYIDGVQVTGADSPLALKSGAINGFAQVRDVTAPQFQKQLDEIARG 300 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-----CQGISETICVNPQYRSNPSFL 351 L+ +F+E D G +PGLF G + I+ V+P S L Sbjct: 301 LVAAFAETDQTGGGGAPLPGLFTYPGAPGAPGSMLIPGLAGQITINANVDPDKGGVVSRL 360 Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 RDGG S + +++N A Y + + ++ + FDP AG+ + +L A SIGW Sbjct: 361 RDGGISGNPDYVYNKSGGAAYSERLLQLVNAPSTQQGFDPGAGLGASGSLNAIAAGSIGW 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L R+ + + +++ SN GVNL +++S ++ +E SY S KL+ + Sbjct: 421 LGAQRAQAEKNVTYQDAMVAQTTQALSNATGVNLDDQMSQMLALENSYQASAKLLETINA 480 Query: 471 MLQTLLEGVK 480 M TL V+ Sbjct: 481 MFDTLFAAVR 490 >gi|218694616|ref|YP_002402283.1| flagellar hook-associated protein FlgK [Escherichia coli 55989] gi|307310140|ref|ZP_07589790.1| flagellar hook-associated protein FlgK [Escherichia coli W] gi|218351348|emb|CAU97054.1| flagellar hook-filament junction protein 1 [Escherichia coli 55989] gi|306909858|gb|EFN40352.1| flagellar hook-associated protein FlgK [Escherichia coli W] gi|315060360|gb|ADT74687.1| flagellar hook-filament junction protein 1 [Escherichia coli W] gi|320200978|gb|EFW75562.1| Flagellar hook-associated protein FlgK [Escherichia coli EC4100B] gi|323379079|gb|ADX51347.1| flagellar hook-associated protein FlgK [Escherichia coli KO11] Length = 547 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 155/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPI--------------------------------AGNSENVPGLF 318 ++A +F+ + + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN + + + F + Sbjct: 359 ATDYKISFDNNQWHVTRLASNTTFSVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|90418364|ref|ZP_01226276.1| putative flagellar hook-associated protein FlgK [Aurantimonas manganoxydans SI85-9A1] gi|90338036|gb|EAS51687.1| putative flagellar hook-associated protein FlgK [Aurantimonas manganoxydans SI85-9A1] Length = 499 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 129/498 (25%), Positives = 220/498 (44%), Gaps = 20/498 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MSLL+ F+ A ++ + Q A + RNI NAD+ R+ T+ V +++ Sbjct: 1 MSLLSAFSNATASLSSVASQSALVSRNIANADSPYATRKYAGLTVGQTGGVRIMSIAQSG 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + L +SA+G + + D SP +S L+ +L ++ + Sbjct: 61 DQALFRSLITTNSALGSASVSAQSLNRIREVIGDVDSPTSPAATLSSLKAALSQFAVSPE 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + ++ A ++ + N + VQ R DAD +++L ++ R L E +N I Sbjct: 121 NGQTAEAAVNAARDMALSLNRATSAVQSARKDADDQLDLAAKDMNRLLGEFGTLNAKIMA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 +AS D D +D+RD +++ +S +G++ VR NDM +YT G T+F+ R + F Sbjct: 181 GSASGSDVTDAVDRRDQIVRTLSGYVGLNVQVRAGNDMALYTDSGITMFDKTARSVEFTP 240 Query: 240 MNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +Y T N IDGVVV ++ + G + L+ +RD FQ QLD +A L+ Sbjct: 241 QPAYDATVAGNSFKIDGVVVAGASSPMPIKGGSVYGLITLRDETAATFQGQLDGIAYALV 300 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC------------VNPQYRS 346 +F+E D A A D + + Sbjct: 301 QAFAETDQRAAGDPGYLPGSYAGLFTDGGSNAIPASMAGAKGLAGTIQIAAGVDPTKPGG 360 Query: 347 NPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 P+ LRDGG +N +G+ +N F+ FD G ++ TL Sbjct: 361 EPARLRDGGIAFAGTANEQYFSYNANGSSGFTGRLNDLIAGFSMPRSFDAAFGAGSSATL 420 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 EY +SIGW E R+ ++D V+ + E+ S+ G+N+ +E++ L+ +E+SY Sbjct: 421 TEYTASSIGWFEGRRATANDASSYQTVLLSRTQETLSDATGINIDDEMTRLLDLERSYQA 480 Query: 461 SNKLIMFTDKMLQTLLEG 478 S+KLI +M+ +LL Sbjct: 481 SSKLISTVGQMIDSLLAI 498 >gi|86136708|ref|ZP_01055286.1| flagellar hook-associated protein [Roseobacter sp. MED193] gi|85826032|gb|EAQ46229.1| flagellar hook-associated protein [Roseobacter sp. MED193] Length = 471 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 80/475 (16%), Positives = 173/475 (36%), Gaps = 11/475 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNMFDKVLH 68 ++ N+ NA Y + + S V + Sbjct: 1 MTGLTANARLSQVTSENLANALTPGYSSQKLNLSSSQYAAGVRIGDVERNIDPALQSTTR 60 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + + + +F + + S + IS +L + Sbjct: 61 KAEAEYAKVEVYANFYSRMSNFVGTVDDSTSISAQISNFDSALVEAISRPDSTERLHDLS 120 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 A VVQ+ +A + + R A+ I+L++ L L EL +N I A+ + Sbjct: 121 VKAGLVVQSITDAAEGLNQQREAAESSIDLQVDQLNTQLKELEKLNARIIVSQATGANTT 180 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 DQRD+L+ +++ I ++ + R+ + +YT G L + +++F+ + Sbjct: 181 AMEDQRDLLVDAVNQAIPVNVVQRDQGRIALYTVGGVALLDGKAAELSFDVNRTIEPQMT 240 Query: 249 S-----NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + + I+G+ + ++ + G + A IRD+V QN LD MAR L+ F + Sbjct: 241 QANGLLSGLEINGLAMDTSSTGPLRGGTLIAAFDIRDNVTVEAQNDLDAMARDLVERFQD 300 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 A G+F D G+S + +N + + Sbjct: 301 PALDATIGATDAGIFTDG-GGAFDPSDTVGLSARLELNDLVAMDGQAETWR--LRDGLYA 357 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + G + Y ++ ++N + L + + + ++ ++++ Sbjct: 358 ATEGDPGDASQLIAYSEAISENRTVSTTKLGLISSDLNTLSASVMSRFARDSDSANNMLS 417 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + ++++ GV+ EL ++ +E +Y + K++ D+M+QTLL Sbjct: 418 YAATSYTELAQAELAL-GVDSDAELQNMMLIENAYAANAKMLSAIDEMMQTLLRM 471 >gi|146305256|ref|YP_001185721.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] gi|145573457|gb|ABP82989.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] Length = 455 Score = 186 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 65/486 (13%), Positives = 150/486 (30%), Gaps = 40/486 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53 M++L A + + AS +NI N + + R T+T + Sbjct: 1 MTILN--QIAYSGVRASQVALASTGQNIANVNTPGFSRLQTITGSLAGQGGLSVGGGVEV 58 Query: 54 -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + R + ++ L ++ Q + E + + + + + + +L Sbjct: 59 ISIRRMTNDFHNQQLWRATTEQSFYSASQQYLTALEALMSGSGSSI--SAGLDQFFAALS 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S L + +I A + Q FN + ++ + + + + Sbjct: 117 EASATPGSIALRQQIISEAGNLAQRFNGLNSNIDAQIKALQEQRSAMATEINGLTENIAL 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + K D+ D R+ L+ ++S+ + + + V ++G L Sbjct: 177 LNKKIVETESVKGDSTALRDHRESLIGQLSQFAKLRVNETPDGSVSVALANGQPLVAGPT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 M + S + + S G L ++ + + Q L + Sbjct: 237 AGQLKVAMTA----SGEQDVSLAFAGTSFPLRQDGFGGAFGGLYEVEYASLRPNQQALHD 292 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA L ++ + PG + + L + T Sbjct: 293 MASQLAQMVNDVLATGFDLAGNPGQPLFAYDPNSTTALLRVEPLTAEQLA---------- 342 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + +G +++ N+ + + VTL + +G + Sbjct: 343 ---------FSSAAGESGNNEVLLDLLGLKNQTITLN-----GSQVTLNDAYAGLLGQVA 388 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + V + V+L EE L+ +Q+Y + K+I +++ Sbjct: 389 SDSRQNQADLKSATAVTQQAQSQRDSVSAVSLDEEAVNLMTYQQAYQANMKVISTANQLF 448 Query: 473 QTLLEG 478 +L Sbjct: 449 DDMLAA 454 >gi|116250501|ref|YP_766339.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. viciae 3841] gi|115255149|emb|CAK06223.1| hook associated protein i homolog (agr_c_1014p) [Rhizobium leguminosarum bv. viciae 3841] Length = 495 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 262/493 (53%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + SS Q+ L S + + + Y SP+ Y+ + L+++ Sbjct: 61 EALLRQYLKTSSQDSAQQTLLSGLEDLKSIVGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I ++ L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQNVRATADKQIATDVDKLNTLLSDFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T+S DA LD+R+ L++IS+I+G++T R+NNDMV+ TSDGT LFET+PR++ F+ Sbjct: 181 TSSGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTSDGTILFETIPREVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + YT T N +++DGV + GS G +++LLQ+RD + P FQ QLDE+AR L+ Sbjct: 241 DVYTATIAGNSVYVDGVALPRGSGSTTTGQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ +AG + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTVAGPAYVPGLFTWSGGTVDTGATAVAGMAATITVSSRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSF----------NKNFIFDPVAGINTNVTLLEYAR 405 + N +GY ++ + FD GI++NV+++E+A Sbjct: 361 INLTGLVLNTSGASGYTTELDRLYTALGSDIDFDPAAGTPVGFDATTGIDSNVSIMEFAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ + + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|209547947|ref|YP_002279864.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533703|gb|ACI53638.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 168/493 (34%), Positives = 262/493 (53%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQNI NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L + + + Y SP+ Y+ + L+++ Sbjct: 61 DALLRQYLKTSSQDSAQQALLGGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I ++ L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRATADKQIATDVDKLNTLLSDFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TAS DA LD+R+ L++IS+I+G++ R+NNDMV+ T+DGT LFET+PR + F+ Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNATTRDNNDMVLSTTDGTILFETIPRKVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + Y T N ++IDGV ++ GS +G +++LLQ+RD + P FQ QLDE+AR L+ Sbjct: 241 DVYNATITGNSVYIDGVALARGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTITVSSRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405 + N L+GY ++ + + FDP A GI++NV+++EYA Sbjct: 361 INVNGVVLNPTGLSGYTTELDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ S + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENSSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|254505051|ref|ZP_05117202.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii DFL-11] gi|222441122|gb|EEE47801.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii DFL-11] Length = 482 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 122/487 (25%), Positives = 218/487 (44%), Gaps = 12/487 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54 MSL AQ+ + + I RNI A + ++ + + V Sbjct: 1 MSLSVALQVAQSALAARQTESSVIARNITGAQEPGFSKKSVQLSTMYTSSGQAGGLRVNG 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L +S Q+ D SP + +L+ +L++Y Sbjct: 61 VARMADSALYASLLTSTSVGTSQQAKLDGITRMAETIGDTELETSPAALLGELQKTLQNY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + ++ + + +A+ + + +S+ VQ++RA+AD ++ + + L EL +N Sbjct: 121 ASDPNNSVMAQDTLQSAKNMAASLRSSSDLVQEVRANADSDMATSVREISSLLGELENLN 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I T + D D LD RD +L +SE IGI T+ R N D+VVYT G TLFET R+ Sbjct: 181 STIVKGTQNGADVTDALDDRDQVLLALSEEIGIKTMDRANGDIVVYTDSGVTLFETSARE 240 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++F +Y+ + + + +DGV V+ + G++ L ++RD +Q+QLDE+ Sbjct: 241 VSFAPTTTYSPGTVGSAVIVDGVPVTGPGAIMPISSGRLHGLAELRDDTAVTYQSQLDEI 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 AR +I +F E + AG + G++ I VNP + D Sbjct: 301 ARGVIEAFGESNGDAGLFT-----WSGAPAIPPGATHSVGLAADIIVNPNADPDQGGSLD 355 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 +N AG+ + +F+ + F ++ + +L +A +S+ WLE Sbjct: 356 RIRDGFSVAYNPAGDAGFSARLQELVGAFDTSRTFAGSVELDPDASLNSFAGSSVSWLEN 415 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 R V+ +E+ SNT GVN+ EEL+ L++VE++Y +++LI D ML+ Sbjct: 416 GRKTLTKNVEIQSVIVGRTAENLSNTTGVNIDEELTLLLEVERAYAAASRLITAVDTMLE 475 Query: 474 TLLEGVK 480 L+ + Sbjct: 476 ELMMATR 482 >gi|322421655|ref|YP_004200878.1| flagellar hook-associated protein FlgK [Geobacter sp. M18] gi|320128042|gb|ADW15602.1| flagellar hook-associated protein FlgK [Geobacter sp. M18] Length = 481 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 80/500 (16%), Positives = 173/500 (34%), Gaps = 39/500 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 M + +F+ A + NI N + + Y R+ + V Sbjct: 1 MGINTIFDIASSGITANRLAIEVTGENISNVNTEGYSRQRVVMENKPVSTANGFALGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + NM L +S + QS E + ++ ++ + Sbjct: 61 EIAAVQRSYDNMLQLQLVNANSTYQESLAQQSALEQIEPSF-NSLTSDGLGTAVANFFGA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S N S + V+ A+ +V +F+ + + + AD + + + L Sbjct: 120 FQDLSVNPSGSAERQAVLTRAQIMVDSFHQLDSSLTSVASTADNNLVGITAEVTDNARNL 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +VN I + +A++ LDQRD+LL+K+SE +G++ V N+ V + G L + Sbjct: 180 ALVNTQILATNSVGGNANELLDQRDLLLRKLSEQVGVTYSVANDGTASVTLAGGAQLVSS 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ----------GSAVPKGKIKALLQIRD 280 + VT++ + ++ A GK+ +++RD Sbjct: 240 TRYATLYTNATGAPVTNDIMISGLGSPPPANAPATDTLVGTVGDGATVGGKLGGTMEVRD 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 S+VP ++ LDEMA ++ + + G D + Sbjct: 300 SIVPKYRAMLDEMADEVVTQVNTLHAAGYALDGSTGNDFFDAAGLTSGSIALD------- 352 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + L + + N + + F A + T Sbjct: 353 --------AGLSAVKIAAGFPTATDPAPTSSGNNENALKIANLGSTSF---AFSTGSATF 401 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + ++ ++ ++ ++ V+L EEL L + ++++ Sbjct: 402 GNFYSSLVSQVGVDTEGTQNVTTQNAAFLKQLNALRASNSEVSLDEELLNLTRYQRAFQG 461 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 S K++ ML +L V+ Sbjct: 462 SAKVVNAATDMLDIVLGMVR 481 >gi|22127321|ref|NP_670744.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10] gi|45442802|ref|NP_994341.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Microtus str. 91001] gi|108809049|ref|YP_652965.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua] gi|108810754|ref|YP_646521.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516] gi|145597823|ref|YP_001161899.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides F] gi|150260243|ref|ZP_01916971.1| lateral flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|162420194|ref|YP_001604841.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165925087|ref|ZP_02220919.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165939060|ref|ZP_02227612.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|166008985|ref|ZP_02229883.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166212172|ref|ZP_02238207.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|167399689|ref|ZP_02305213.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419324|ref|ZP_02311077.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425178|ref|ZP_02316931.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466331|ref|ZP_02331035.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1] gi|218927918|ref|YP_002345793.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92] gi|229837414|ref|ZP_04457577.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides A] gi|229840629|ref|ZP_04460788.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842820|ref|ZP_04462972.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. India 195] gi|229900951|ref|ZP_04516075.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516] gi|270487666|ref|ZP_06204740.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294502794|ref|YP_003566856.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|21960402|gb|AAM86995.1|AE013948_3 putative flagellar hook-associated protein [Yersinia pestis KIM 10] gi|45437668|gb|AAS63218.1| putative flagellar hook-associated protein [Yersinia pestis biovar Microtus str. 91001] gi|108774402|gb|ABG16921.1| flagellar hook-associated protein [Yersinia pestis Nepal516] gi|108780962|gb|ABG15020.1| putative flagellar hook-associated protein [Yersinia pestis Antiqua] gi|115346529|emb|CAL19406.1| putative flagellar hook-associated protein [Yersinia pestis CO92] gi|145209519|gb|ABP38926.1| flagellar hook-associated protein [Yersinia pestis Pestoides F] gi|149289651|gb|EDM39728.1| lateral flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|162353009|gb|ABX86957.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165913016|gb|EDR31641.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|165923287|gb|EDR40438.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165992324|gb|EDR44625.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166206918|gb|EDR51398.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|166963318|gb|EDR59339.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052193|gb|EDR63601.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055941|gb|EDR65722.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682290|gb|EEO78382.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516] gi|229690087|gb|EEO82144.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. India 195] gi|229696995|gb|EEO87042.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705537|gb|EEO91547.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides A] gi|262360826|gb|ACY57547.1| flagellar hook-associated protein [Yersinia pestis D106004] gi|262364771|gb|ACY61328.1| flagellar hook-associated protein [Yersinia pestis D182038] gi|270336170|gb|EFA46947.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294353253|gb|ADE63594.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|320016705|gb|ADW00277.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 453 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 65/483 (13%), Positives = 155/483 (32%), Gaps = 43/483 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56 A + + NI N Y R+ + + V V R Sbjct: 4 IRTAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIR 63 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 ++ +S + + E+M +++ + S ++ SL + ++ Sbjct: 64 RLSQQYVVMQEWRANSQQQYYDAGEQYLNAVELMVSNE--STSLATGLNNFFSSLSAATQ 121 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + +I++A + FN + + + ++ ++ + + + N Sbjct: 122 LPDSPPMRQQIIESANAMALRFNNVNNFIVQQKKSIGQQRDITVKEINSLTRSIADYNQQ 181 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + ++ +D LD++++ ++K+S +I + + G L Sbjct: 182 ILKNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRISVKQGQPLVNGAVAAEL 241 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 +S + ++ + G++ + + + Q+ EMA+ Sbjct: 242 AVDTSSVDTKITLH------FSGATQGMNMSCGGQLGGINDYELTTLKKLQDSTQEMAKT 295 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + F+++ + PG + N + Q Sbjct: 296 VADKFNDQLGKGTDFTGAPGQDLFVFNPSDPNGMLQL----------------------- 332 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 LA + + F I NV L + A +G++ + Sbjct: 333 --SAITAEQLALAAHGKPAGDNSNLFELLDIRKTPVTGMKNVPLDDAATALVGYIAITSN 390 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +H ++ N + + + GVN EE L++ +++Y + K+I DK+ LL Sbjct: 391 RNHSELENAENTLNQATRYHESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLL 450 Query: 477 EGV 479 V Sbjct: 451 ALV 453 >gi|241203125|ref|YP_002974221.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857015|gb|ACS54682.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 495 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQNI NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + SS Q+ L + + + Y SP+ Y+ + L+++ Sbjct: 61 EALLRQYLKTSSQDSAQQALLGGLEDLKSIVGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I ++ L L++ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQNVRATADKQIATDVDKLNTLLNDFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TAS DA LD+R+ L++IS+I+G++T R+NNDMV+ TSDGT LFET+PR + F+ Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTSDGTILFETIPRKVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + YT T N +++DGV + GS G +++LLQ+RD + P FQ QLDE+AR L+ Sbjct: 241 DVYTATITGNSVYVDGVALPRGSGSTTTGQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ AG + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTAAGPAYVPGLFTWSGGTVDTGATAVAGMAATITVSSRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSF----------NKNFIFDPVAGINTNVTLLEYAR 405 + + N +GY ++ + FD GI++NV+++E+A Sbjct: 361 VNATGLVLNTSGASGYTTELDRLYTALGSDIDFDPAAGTPVGFDATTGIDSNVSIMEFAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ + + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|238785491|ref|ZP_04629474.1| hypothetical protein yberc0001_18240 [Yersinia bercovieri ATCC 43970] gi|238713593|gb|EEQ05622.1| hypothetical protein yberc0001_18240 [Yersinia bercovieri ATCC 43970] Length = 549 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 76/550 (13%), Positives = 171/550 (31%), Gaps = 80/550 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N A + + A +++ NI N Y R++ + + VTV Sbjct: 1 MNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFIGNGVTVTGVN 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 E + L SS L ++ + ++ + + +N+ + + +L++ Sbjct: 61 REYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSVTMQDFFSNLQNLVS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N +D KTV+ AE +V F + + ++ + +++I ++ + + ++ +ND Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTKINNYAEQIAKLNDQ 178 Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I +S + + LDQRD L+ ++++I+G++ ++ + V + G L + Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVAFASGLPLVQGSSSYK 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T + V S + G + L+ R + +NQL ++A Sbjct: 239 VEAIASGSDATRLAIGYKYGSGDVMEVDESRLATGSLGGTLKFRSEALDSARNQLGQLAL 298 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADG--------------------------------- 322 V+ SF+ + + G Sbjct: 299 VMADSFNTQHKAGFDINGDQGENFFSFAQPNVLKNSNNQGDASLTVSYADTSKVKASDYS 358 Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 +L + + L G A L+ Sbjct: 359 VEFDGTNWQVTRLSDNTKVPANPVVDVNGDTTGLSFDGLSVSIDNGTTGAQAKDKFLVKT 418 Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408 + + + ++ TL + Sbjct: 419 VSNVAANLQVDITDSSKIAAAGTADGGASDNVNAKALLDLQTQKLVDGKATLAGAYAGLV 478 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + ++ + GVNL EE L + +Q Y + ++I Sbjct: 479 SNVGNQTNTAKTNSAAQANIVTQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTA 538 Query: 469 DKMLQTLLEG 478 + LL+ Sbjct: 539 STLFNALLDL 548 >gi|310764854|gb|ADP09804.1| Flagellar hook-associated protein 1, FlgK [Erwinia sp. Ejp617] Length = 545 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 88/546 (16%), Positives = 174/546 (31%), Gaps = 73/546 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 +FN A++ +++ + I NI NA N +Y RRD + S V V Sbjct: 2 NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + L +E L E+ + + +P+ ++K ++L+ Sbjct: 62 VQRGYDAFINNELR--GGITACAGHKTRYEQLAEIDNMLGNDETNPSVSLNKFFEALKEM 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 K+ S ++ + FN+S+ + + + +I+ + ++ +L +N Sbjct: 120 EKDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179 Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232 + I K + D LD RD LL+ +S GI M V +DG L Sbjct: 180 ENIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTR 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + + G + L R+ + +N+L++ Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299 Query: 293 MARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-- 341 MA + G F+ +P +A+ D + ++ Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKA 359 Query: 342 -------------------------------------------PQYRSNPSFLRDGGSVS 358 + L V+ Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTLNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413 + V N + + + N + GI TL E + + L Sbjct: 420 ENVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLVGKATLTESYASLVSGLGS 479 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + + V N ++ + + VGVNL++E L E+ Y + +++ ML Sbjct: 480 STSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539 Query: 474 TLLEGV 479 TLL Sbjct: 540 TLLAIK 545 >gi|259907640|ref|YP_002647996.1| Flagellar hook-associated protein 1, FlgK [Erwinia pyrifoliae Ep1/96] gi|224963262|emb|CAX54746.1| Flagellar hook-associated protein 1, FlgK [Erwinia pyrifoliae Ep1/96] Length = 545 Score = 184 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 88/546 (16%), Positives = 174/546 (31%), Gaps = 73/546 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 +FN A++ +++ + I NI NA N +Y RRD + S V V Sbjct: 2 NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + L +E L E+ + + +P+ ++K ++L+ Sbjct: 62 VQRGYDAFINNELR--GGITACAGHKTRYEQLAEIDNMLGNDETNPSVSLNKFFEALKEM 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 K+ S ++ + FN+S+ + + + +I+ + ++ +L +N Sbjct: 120 EKDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179 Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232 + I K + D LD RD LL+ +S GI M V +DG L Sbjct: 180 ENIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTR 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + + G + L R+ + +N+L++ Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299 Query: 293 MARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-- 341 MA + G F+ +P +A+ D + ++ Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKA 359 Query: 342 -------------------------------------------PQYRSNPSFLRDGGSVS 358 + L V+ Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413 + V N + + + N + GI TL E + + L Sbjct: 420 ENVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLIGKATLTESYASLVSGLGS 479 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + + V N ++ + + VGVNL++E L E+ Y + +++ ML Sbjct: 480 STSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539 Query: 474 TLLEGV 479 TLL Sbjct: 540 TLLAIK 545 >gi|327193060|gb|EGE59972.1| flagellar hook-associated protein [Rhizobium etli CNPAF512] Length = 495 Score = 184 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 165/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGSQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L S + + + Y SP+ Y+ + L+++ + Sbjct: 61 DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I + L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATAVDTLNTLLSQFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ L++IS+I+G+S R+NNDMV+ T DGT LFET+PR + F+ Sbjct: 181 TATGADPSSALDEREKTLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFQAQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + Y T N +++DGV + GS +G +++LLQ+RD + P FQ QLDE+AR L+ Sbjct: 241 DVYNATITGNSVYVDGVALPRGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEIARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTISVSSRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405 + N L+GY ++ + + FDP A GI++NV+++EYA Sbjct: 361 VNVNGVVNNPTGLSGYTTDLDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ + + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|253702425|ref|YP_003023614.1| flagellar hook-associated protein FlgK [Geobacter sp. M21] gi|251777275|gb|ACT19856.1| flagellar hook-associated protein FlgK [Geobacter sp. M21] Length = 480 Score = 184 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 72/500 (14%), Positives = 172/500 (34%), Gaps = 40/500 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M + +F+ A + NI N + + Y R+ + V Sbjct: 1 MGIGTLFDIASSGVTAQRLAIEVTGENIANVNTEGYSRQQVIMETKPVTTANGFPLGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + NM + +S+ + Q+ + ++ + ++ + Sbjct: 61 QIAAVQRTYDNMLQLQMVNGNSSYQENLAKQTALEQIQPSF-NEVTADGLGKALANFFGA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N S + +I ++ +V +F+ + K+ AD + + L Sbjct: 120 WQDLTTNASGSAERQALITRSQILVDSFHQMDFTLSKVAETADSNLVGITAEATDNARNL 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +VN I + +A++ LDQRD+LL+K+S+ + I++ + + V + G + ++ Sbjct: 180 ALVNTQILATASVGGNANELLDQRDLLLRKLSQQVEITSTINVDGTASVKVAGGGQIVDS 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----------PKGKIKALLQIRD 280 + ++ + ++ + GK+ +Q+RD Sbjct: 240 TRYATLYTNATGVPAANDIMLSDLGNPPPANVPATDTLVATVGGGAAVGGKLGGTMQVRD 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 +VP + +LDEMA L+ + + G D + Sbjct: 300 DIVPDYLARLDEMADELVTRVNALHNAGYALDGSTGNDFFDAAGLSAGTIAL-------- 351 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + + + +G N++ F N + Sbjct: 352 ------DGTLTGVKVAAALSVPTDPVPSSGNNLNALQLAALGNQSVPF-----TTGNASF 400 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + ++ + ++ S+ V+L EEL+ L K ++++ Sbjct: 401 VNNYNSLVSQVGVDTEGTQNVAGQGASFLKQLNALRSSNSEVSLDEELTNLTKYQRAFQG 460 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 S K+I ML +L V+ Sbjct: 461 SAKVISAATDMLDIVLGMVR 480 >gi|224825783|ref|ZP_03698887.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] gi|224602007|gb|EEG08186.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] Length = 457 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 65/482 (13%), Positives = 157/482 (32%), Gaps = 39/482 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56 A + A ++ +N+ N Y R+ + + + V V R Sbjct: 4 IQNALSGAIAAQAALNTVSQNLSNEMTPGYSRQGVLLSTLVPGAGDRLGAGMGVDVTAIR 63 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + ++ G+ Q + A E + S + + K +L + S Sbjct: 64 RFSDSYKNLQMWQAAAGQGELAAAQPYFAQLEQVMG--SDGTSLSGGLDKFYSALNAASV 121 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S L + VI A+ + + FN +A +++ ++ + + +N Sbjct: 122 EPSSVPLRQQVISEADALARRFNNLNGVFATQQASLNEQRSATLAQINTITQSIAALNGK 181 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A +A LD+RD + ++ ++ + + + + V G L Sbjct: 182 VAEADAVGTNASGLLDERDRQIDALAALVDVRVSQQPDGSLSVTLRGGQPLVIGNTAATL 241 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + N + + + + + G++ L Q + +V+ + + +A Sbjct: 242 AAQGNV----NGTQTMTLQFAKERFTLPNDNLGGQLGGLNQYQSAVLQPMTDAVRTLAGE 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L + + + G + + + Q + + Sbjct: 298 LATRTNAQLASGFDLNGQAGAALFVFDAASTSGMLQ------------------VSAIQA 339 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 F + A +L+ + NVT+ + G L + Sbjct: 340 DQLGFSSDPAKPANSDNLL-----ALIAIKDQSIAMTGLGNVTISDAYAQLTGHLAIDSQ 394 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + VV +++ +T GVN EE L++ ++ Y + K+I +++ + L Sbjct: 395 QNKAGLETASVVRGEAEKNWKSTSGVNSDEEAINLVEFQKMYQANMKVIAVANQLFDSTL 454 Query: 477 EG 478 Sbjct: 455 AI 456 >gi|291282102|ref|YP_003498920.1| Flagellar hook-associated protein FlgK [Escherichia coli O55:H7 str. CB9615] gi|290761975|gb|ADD55936.1| Flagellar hook-associated protein FlgK [Escherichia coli O55:H7 str. CB9615] Length = 547 Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++S+I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELSQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSCADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|51597631|ref|YP_071822.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 32953] gi|186896765|ref|YP_001873877.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|51590913|emb|CAH22569.1| putative flagellar hook-associated protein [Yersinia pseudotuberculosis IP 32953] gi|186699791|gb|ACC90420.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] Length = 453 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 67/483 (13%), Positives = 157/483 (32%), Gaps = 43/483 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56 A + + NI N Y R+ + + V V R Sbjct: 4 IRTAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIR 63 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 ++ +S + + E+M +++ + S ++ SL + ++ Sbjct: 64 RLSQQYVVMQEWRANSQQQYYDAGEQYLNAVELMVSNE--STSLATGLNNFFSSLSAATQ 121 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + VI++A + FN + + + ++ ++ + + + N Sbjct: 122 LPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDITVKEINSLTRSIADYNQQ 181 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + ++ +D LD++++ ++K+S +I + + G L Sbjct: 182 ILKNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRISVKQGQPLVNGAVAAEL 241 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 +S + ++ + G++ + + + Q+ EMA+ Sbjct: 242 AVDTSSVDTKITLH------FSGATQGMNMSCGGQLGGINDYELTTLKKLQDSTQEMAKT 295 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + F+++ + PG + N + Q + T Sbjct: 296 VADKFNDQLGKGTDFTGAPGQDLFVFNAGDPNGMLQLSAITAEQLA-------------- 341 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 L + AG + D NV L + A +G++ + Sbjct: 342 -----LADRGKPAGDNSNLFKLLDIRQTPVTGM------KNVALDDAATALVGYIAITSN 390 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +H ++ N + + + GVN EE L++ +++Y + K+I DK+ LL Sbjct: 391 RNHSELENAENTLNQATRYHESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLL 450 Query: 477 EGV 479 V Sbjct: 451 ALV 453 >gi|74311643|ref|YP_310062.1| flagellar hook-associated protein FlgK [Shigella sonnei Ss046] gi|73855120|gb|AAZ87827.1| flagellar hook-filament junction protein 1 [Shigella sonnei Ss046] gi|323165592|gb|EFZ51379.1| flagellar hook-associated protein FlgK [Shigella sonnei 53G] Length = 547 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITVANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQELDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|300954378|ref|ZP_07166832.1| flagellar hook-associated protein FlgK [Escherichia coli MS 175-1] gi|301029703|ref|ZP_07192757.1| flagellar hook-associated protein FlgK [Escherichia coli MS 196-1] gi|299877391|gb|EFI85602.1| flagellar hook-associated protein FlgK [Escherichia coli MS 196-1] gi|300318614|gb|EFJ68398.1| flagellar hook-associated protein FlgK [Escherichia coli MS 175-1] gi|323942551|gb|EGB38718.1| flagellar hook protein FlgK [Escherichia coli E482] Length = 547 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMEQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|209773324|gb|ACI84974.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli] gi|320659346|gb|EFX26915.1| flagellar hook-associated protein FlgK [Escherichia coli O55:H7 str. USDA 5905] Length = 547 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSCADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|167574707|ref|ZP_02367581.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis C6786] Length = 452 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 65/476 (13%), Positives = 154/476 (32%), Gaps = 32/476 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMF 63 + + A+ + N N Y RR + + V N++ Sbjct: 2 NLIYIGMSGLRAANWSLRATADNTSNLATSGYSRRGVLLSSGANGGVDTSATLRFNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSA---DDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L + +G+ + QS+ E +++ + + + + SL + S + Sbjct: 62 TQQLWTTNGKLGRHKASQSYLDQLERLTSISLPEGKSKTNDLGMGAFFASLNAASTDPGS 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L + V+D + + FN + + + ++ + + + + +N I Sbjct: 122 SVLRQAVLDATGSMTKQFNNMRSTLNEQLRNIEQARVATVEEINGRAAAIAELNAKIMSG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 A+ D LDQRDV + +S + G+ + + N + V G L + Sbjct: 182 QAAGADVSGLLDQRDVAVDALSGLAGVRVVQQPNGTVDVSLGTGQPLVLGNQAATMAVEH 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ S + + + +A G ++ L + D V+ L + L+ Sbjct: 242 DA----SGRQTLSLTFGDQTMPVRTASVGGALRGLSDVEDDVLRPQMEALRSLGSQLVDL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + PG + T + L+ Sbjct: 298 VNTQLGDGYDMNGKPGKPL----------------ITYDPSTGMLGIDKTLKPDDLAFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + A LI + + V+L + + ++ Sbjct: 342 DPDNPGDNANLRALIELGHSKIDVPGL--------GTVSLENATAVMMAKIGSASRENKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L + + + GV+ EE +++ ++ Y+ + K+I +++ +T L Sbjct: 394 LLETADATRAQAERDWQSVSGVDKDEEAMNILRFKEMYSANMKVISVANELFETTL 449 >gi|86356331|ref|YP_468223.1| flagellar hook-associated protein FlgK [Rhizobium etli CFN 42] gi|86280433|gb|ABC89496.1| flagellar hook-associated protein [Rhizobium etli CFN 42] Length = 495 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 168/493 (34%), Positives = 261/493 (52%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQNI NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L S + + + Y SP+ Y+ + L+++ + Sbjct: 61 DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA+ADKEI + L LSE N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRANADKEIATAVDTLNTLLSEFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ +L++IS+I+G+S R+NNDMV+ T DGT LFET+PR + F+ Sbjct: 181 TATGADTSGALDEREKVLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + YT T+ N ++IDGV + +GS G +++LLQIRD + P FQ QLDE AR L+ Sbjct: 241 DIYTATTVGNSVYIDGVALPLGKGSTTTGQGSLQSLLQIRDEIAPNFQKQLDETARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGATAVAGMASTITVSTRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNK----------NFIFDPVAGINTNVTLLEYAR 405 + + N ++GY ++ + FD GI++NV+++EYA Sbjct: 361 VNAAGVVLNTSGVSGYTAELDRLYTAMTSDMDFDPAAGAPVGFDATTGIDSNVSIMEYAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ + + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|293433372|ref|ZP_06661800.1| flagellar hook-associated protein FlgK [Escherichia coli B088] gi|291324191|gb|EFE63613.1| flagellar hook-associated protein FlgK [Escherichia coli B088] Length = 547 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAVRQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|304392492|ref|ZP_07374432.1| flagellar hook-associated protein FlgK [Ahrensia sp. R2A130] gi|303295122|gb|EFL89482.1| flagellar hook-associated protein FlgK [Ahrensia sp. R2A130] Length = 481 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 127/486 (26%), Positives = 248/486 (51%), Gaps = 11/486 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSE 58 MSL AQN N S+ +++ RNI +D+ NYVRR+ + + T+ ++ Sbjct: 1 MSLTQALGSAQNSLLNISRGTSTVARNISRSDDANYVRRELSNIAGANRAPQTITSRAQL 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + A S + GQ+ + + + ++ D ++ +++L++SL+ ++ Sbjct: 61 DAQLTRTQIDALSRSAGQEVIAGQLDRMAIAINGIDGESSPLAG-LTRLQNSLQVWAARP 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S++ LG +D+A +V+ N + + V + R D+ + ++++L L AI Sbjct: 120 SDETLGGAAVDSARTLVRGLNRAQQAVGEARLSIDRLAQDDVASLNGLLQRFKATERAIA 179 Query: 179 ---FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + A D +D+RD L+++I++I+ +++I R++ ++ TS+G T+F+ R + Sbjct: 180 GNDDTSLTAEKAMDAMDERDNLIRQIAQIVPVTSIARSDRSTMLVTSNGATIFDDTARTV 239 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMA 294 + S V S+ + + +DGV + + QGS G + LQ+RD + + QLD +A Sbjct: 240 SL----SLPVGSQQSRVLVDGVPLPAAQGSDTDARGSLSGYLQLRDGALADQERQLDAIA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 LI F+E D G + GLF G + G + +I ++P + +NP+ LRDG Sbjct: 296 GQLISQFAETDLSGGGAPPAVGLFTWSGAPAVPGATAIGTARSIAIDPAFEANPNLLRDG 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G+ + N A + DL+N D+ I+ +T+ ++A SIGWL+ Sbjct: 356 GANGASTVANTSGGASFSDLLNQRIDALETPAAIGSATQISGTLTISQFASQSIGWLDGA 415 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 RS + + + +SE+ SN GVN+ EE++ L+++E++Y S +++ D++ T Sbjct: 416 RSTASRAADEKSALATRLSENLSNEGGVNIDEEMTRLLQLERAYEASARIVSTVDRLFDT 475 Query: 475 LLEGVK 480 LL ++ Sbjct: 476 LLASIR 481 >gi|157160609|ref|YP_001457927.1| flagellar hook-associated protein FlgK [Escherichia coli HS] gi|170020522|ref|YP_001725476.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739] gi|312971219|ref|ZP_07785397.1| flagellar hook-associated protein FlgK [Escherichia coli 1827-70] gi|157066289|gb|ABV05544.1| flagellar hook-associated protein FlgK [Escherichia coli HS] gi|169755450|gb|ACA78149.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739] gi|310336421|gb|EFQ01607.1| flagellar hook-associated protein FlgK [Escherichia coli 1827-70] Length = 547 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASVVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|315618252|gb|EFU98842.1| flagellar hook-associated protein FlgK [Escherichia coli 3431] Length = 547 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 152/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + + Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKLIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|197120116|ref|YP_002140543.1| flagellar hook-associated protein FlgK [Geobacter bemidjiensis Bem] gi|197089476|gb|ACH40747.1| flagellar hook-associated protein FlgK [Geobacter bemidjiensis Bem] Length = 482 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 71/500 (14%), Positives = 170/500 (34%), Gaps = 38/500 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M + +F+ A + NI N + Y R+ + V Sbjct: 1 MGIGTLFDIASSGVTAQRLAIEVTGENIANVNTDGYSRQQVIMENKPVTTANGFPLGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + NM +S+ + Q+ + ++ ++ ++ + Sbjct: 61 QIGAVQRTYDNMLQLQQVNGNSSYQENLAKQTALEQIQPSF-NELTSDGLGKALTNFFGA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N S + +I ++ +V +F+ + + + AD + + L Sbjct: 120 WQDLTTNASGSAERQALITRSQILVDSFHQMDFTLSNVASTADSNLVGITAEATDNARNL 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +VN I + +A++ LDQRD+LL+K+S+ + I++ + + V G + + Sbjct: 180 ALVNTQILATGSVGGNANELLDQRDLLLRKLSQQVSITSTINADGTASVTLPGGGQIVNS 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----------PKGKIKALLQIRD 280 + ++ + ++ + GK+ +Q+RD Sbjct: 240 TRYATLYTNATGAPAANDIMLSALGNPPPANVPATDTLVATVGGGATVGGKLGGTMQVRD 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 +VP + +L+EMA L+ + + G + Sbjct: 300 GIVPGYLARLNEMANQLVTRTNTLHSAGYALDGTTGNNFFNPAGLTAGS----------- 348 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + ++ + +G + N++ F N + Sbjct: 349 -IALDGALTGTKVAAALPVVPTDPIPTSSGNNLNALQFVALGNQSVPF-----TTGNASF 402 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + ++ + +S S+ V+L EEL+ L K ++++ Sbjct: 403 VNNYNSLVSQVGVDTEGTQNVASQGASFLKQLSALRSSNSEVSLDEELTNLTKYQRAFQG 462 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 S K+I ML T+L V+ Sbjct: 463 SAKVISAATDMLDTVLGMVR 482 >gi|320664481|gb|EFX31632.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. LSU-61] Length = 547 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAARTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|187732740|ref|YP_001880749.1| flagellar hook-associated protein FlgK [Shigella boydii CDC 3083-94] gi|187429732|gb|ACD09006.1| flagellar hook-associated protein FlgK [Shigella boydii CDC 3083-94] Length = 547 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRMTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|221640803|ref|YP_002527065.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides KD131] gi|332559781|ref|ZP_08414103.1| FlgK2 [Rhodobacter sphaeroides WS8N] gi|221161584|gb|ACM02564.1| Flagellar hook-associated protein FlgK [Rhodobacter sphaeroides KD131] gi|332277493|gb|EGJ22808.1| FlgK2 [Rhodobacter sphaeroides WS8N] Length = 481 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 168/490 (34%), Gaps = 21/490 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + A + N S+ + N+ NA + + RR+ T + V V Sbjct: 1 MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +A G + +F + D S IS SL + + Sbjct: 61 DRMVNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V+D A+ + ++ V + R AD I +I L L+ + +N Sbjct: 120 SRPESQARLQDVLDKAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + D+ D+R L+ IS I+ + + R N + ++T+ G L + DI Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239 Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 FE S + + ++G+ + + G + G + A +RD + P Q + Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLTVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299 Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD +A+ LIG + D + A L +S +P Sbjct: 300 LDALAQDLIGRMAAADASLGAGDAGLFTDDGAAFDPAAPAGLASRLSVNALADPDRGGAL 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LRDG + L G++ + A ++ Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAA-------LDARTPHAANGLSGTFSFSGLAAETV 412 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + GV+ E+ L+ +E++Y + K++ Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471 Query: 469 DKMLQTLLEG 478 D +LQ LLE Sbjct: 472 DDLLQYLLEM 481 >gi|332669180|ref|YP_004452188.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484] gi|332338218|gb|AEE44801.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484] Length = 480 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 57/492 (11%), Positives = 131/492 (26%), Gaps = 34/492 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS + A + Q +N+ NA+ Y R+ + Sbjct: 1 MSTFSGLGTALSSLIAQRQALDVAGQNVANANTVGYTRQRASMSALPAAQVPSMFSVNHG 60 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + E V V D L + A E + ++ Sbjct: 61 AGEGVRVTGIERLGDVFLDMRLRTQTGGASYLAARADAYATLEKSLG-EPGETGLASQLA 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + S +D V+ + V T + A + + Sbjct: 120 TMWGAWADLSNTPDKDSARAVVMQESTAVADRIATLYTAARTQWTQALSTTTALVDKVNT 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + + +N I T S A++ DQRD+L+ ++ ++G S + R N + V Sbjct: 180 TAAGVADLNARILEITNSGGTANELADQRDLLVMDLASLVGASAVTRENGQVDVLVGGNA 239 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + + S+ + V V + G + SV+ Sbjct: 240 LVSGKRAHALEVQGARSFAQATGDTATPGQPVTVVWAERPTQSAGLDGGRVAGLLSVLAP 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 V + + ++ A + Sbjct: 300 AGPGGTGGPLVEAAARYDALAQTIATKVNAFHSTA-----------------VTTTGAAG 342 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + V + + + + + A + Sbjct: 343 GDFWAVDGPEPPALALRIAVADRSAIAVAAAG-AGALDGSVGDQIAALKTDETGPDAHWS 401 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 ++ L + + ++ + V+ EE ++ +++Y + +++ Sbjct: 402 ATVVDLGVRAASASARSKVAESARVTAQQQQLAATSVDTDEETVNMLAFQRAYEGAARVL 461 Query: 466 MFTDKMLQTLLE 477 D+ML TL+ Sbjct: 462 TAVDEMLDTLIN 473 >gi|331652135|ref|ZP_08353154.1| flagellar hook-associated protein FlgK [Escherichia coli M718] gi|331050413|gb|EGI22471.1| flagellar hook-associated protein FlgK [Escherichia coli M718] Length = 547 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIVAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLVLTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|15801199|ref|NP_287216.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 EDL933] gi|15830714|ref|NP_309487.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. Sakai] gi|168747142|ref|ZP_02772164.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4113] gi|168758625|ref|ZP_02783632.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4401] gi|168764494|ref|ZP_02789501.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4501] gi|168767741|ref|ZP_02792748.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4486] gi|168773927|ref|ZP_02798934.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4196] gi|168783612|ref|ZP_02808619.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4076] gi|168790017|ref|ZP_02815024.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC869] gi|168802027|ref|ZP_02827034.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC508] gi|195935472|ref|ZP_03080854.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4024] gi|208808965|ref|ZP_03251302.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4206] gi|208815841|ref|ZP_03257020.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4045] gi|208822064|ref|ZP_03262383.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4042] gi|209396607|ref|YP_002269928.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4115] gi|217328179|ref|ZP_03444261.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. TW14588] gi|254792464|ref|YP_003077301.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. TW14359] gi|261227013|ref|ZP_05941294.1| flagellar hook-filament junction protein 1 [Escherichia coli O157:H7 str. FRIK2000] gi|261256247|ref|ZP_05948780.1| flagellar hook-filament junction protein 1 [Escherichia coli O157:H7 str. FRIK966] gi|12514623|gb|AAG55828.1|AE005318_5 flagellar biosynthesis, hook-filament junction protein 1 [Escherichia coli O157:H7 str. EDL933] gi|13360924|dbj|BAB34883.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli O157:H7 str. Sakai] gi|187770507|gb|EDU34351.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4196] gi|188018095|gb|EDU56217.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4113] gi|188999081|gb|EDU68067.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4076] gi|189354572|gb|EDU72991.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4401] gi|189363324|gb|EDU81743.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4486] gi|189365527|gb|EDU83943.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4501] gi|189370488|gb|EDU88904.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC869] gi|189375922|gb|EDU94338.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC508] gi|208728766|gb|EDZ78367.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4206] gi|208732489|gb|EDZ81177.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4045] gi|208737549|gb|EDZ85232.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4042] gi|209158007|gb|ACI35440.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC4115] gi|209773318|gb|ACI84971.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli] gi|209773320|gb|ACI84972.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli] gi|209773322|gb|ACI84973.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli] gi|209773326|gb|ACI84975.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli] gi|217318606|gb|EEC27032.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. TW14588] gi|254591864|gb|ACT71225.1| flagellar hook-filament junction protein 1 [Escherichia coli O157:H7 str. TW14359] gi|320189765|gb|EFW64421.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. EC1212] gi|320637533|gb|EFX07333.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. G5101] gi|320643094|gb|EFX12295.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H- str. 493-89] gi|320648552|gb|EFX17207.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H- str. H 2687] gi|320653866|gb|EFX21940.1| flagellar hook-associated protein FlgK [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|326339304|gb|EGD63118.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. 1125] gi|326344735|gb|EGD68483.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7 str. 1044] Length = 547 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|292489127|ref|YP_003532014.1| flagellar hook-filament junction protein 1 [Erwinia amylovora CFBP1430] gi|292900246|ref|YP_003539615.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946] gi|291200094|emb|CBJ47220.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946] gi|291554561|emb|CBA22169.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora CFBP1430] gi|312173285|emb|CBX81540.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora ATCC BAA-2158] Length = 545 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 85/546 (15%), Positives = 169/546 (30%), Gaps = 73/546 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 +FN A++ +++ + I NI NA N +Y RRD + S V V Sbjct: 2 NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S +E L E+ + + +P+ ++K D+L+ Sbjct: 62 VQRGYDAFINNEMR--SGITACAGHKARYEQLAEIDNMLGNDETNPSVSLNKFFDALKEM 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 K+ S ++ + FN+S+ + + + +I+ + ++ +L +N Sbjct: 120 EKDPSAPAARQSAFSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179 Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232 + I K + D LD RD LL+ +S GI M V +DG L Sbjct: 180 ENIEKIVSQHGTPPADMLDARDGLLEDLSMQTGIKVSEDKLTGRMDVMLADGRPLVSGSR 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + + G + L R+ + +N+L++ Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299 Query: 293 MARVLI-------------------------------------------------GSFSE 303 MA + + Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGTASIDVKLTAPYTDINA 359 Query: 304 KDPIAGNSENV-----PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 +D + + + +L + L V+ Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413 + + N + + + N + GI TL E + + L Sbjct: 420 ENVSVAIANGEAIAASDSSDPEEVSNNKNLALLLGIQDEKLIGKATLTESYASLVSGLGS 479 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + S V ++ + + VGVNL++E L E+ Y + +++ ML Sbjct: 480 TTSALKADYSTSGSVLKELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539 Query: 474 TLLEGV 479 TLL Sbjct: 540 TLLAIK 545 >gi|156934434|ref|YP_001438350.1| flagellar hook-associated protein FlgK [Cronobacter sakazakii ATCC BAA-894] gi|156532688|gb|ABU77514.1| hypothetical protein ESA_02265 [Cronobacter sakazakii ATCC BAA-894] Length = 552 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 73/554 (13%), Positives = 163/554 (29%), Gaps = 79/554 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS ++ N A + + A +++ NI N + Y R+ T+ S V Sbjct: 1 MS-SSLINSAMSGLSAAQTALSTVSNNISNYNVAGYTRQTTVLGQSNSTMTQGGWVGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + E L+A + + + M N+ + + S Sbjct: 60 YVSGIQREYDAFITNQLNAAQNQSSGLTTRYEQMSKIDDM--VSGTTNNISTTMQDFFKS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N + +T++ A+ +V F + ++ + + + + + +++ Sbjct: 118 LQTLASNAEDPAARQTLLGKADGLVNQFKVVDQYLRDQDKQVNTAVTASVQQINNYATQI 177 Query: 171 TVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N+ I T + +D LDQRD L+ ++++I+G+ V++ N V ++G L Sbjct: 178 ASLNEQITRLTGMGAGASPNDLLDQRDQLVSELNKIVGVDVSVQDGNTFNVTMANGYNLV 237 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +S + + V G + L R + +N Sbjct: 238 QGSKASQVAAVPSSADPSRTTIAFVDKTAGNIEIPEKLVTSGSLGGLFAFRSEDLDQARN 297 Query: 289 QLDEMARVLIGSFSEKD--------------------------------------PIAGN 310 L ++A +F+++ + Sbjct: 298 NLGQIALAFGDAFNKQHEAGFDANGDVGKAFFKLGSPAAMSNARNTGSASLTASITDSTA 357 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK---- 366 + DG +L ++ N + L G Sbjct: 358 VKASNYQMAYDGTNWKVTRLSDNVTVNATPTTDGAGNVTALEFDGLKIGITGAAANKDTF 417 Query: 367 ----------------------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +A + + + T + Sbjct: 418 IVKPVNDVIISMDVNVHDESEIAMASDATSGESDNRNGKALLDLQNSKVVGGSKTFNDAY 477 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 I + + V ++ + GVNL EE L + +Q Y + ++ Sbjct: 478 AAFISEVGNKTNTLKSSSTTQTNVVTQLTNQQQSISGVNLDEEYGNLQRYQQYYMANAQV 537 Query: 465 IMFTDKMLQTLLEG 478 + + LL+ Sbjct: 538 LQTASALFDALLQI 551 >gi|323190594|gb|EFZ75866.1| flagellar hook-associated protein FlgK [Escherichia coli RN587/1] Length = 547 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|293414375|ref|ZP_06657024.1| flagellar hook-associated protein FlgK [Escherichia coli B185] gi|291434433|gb|EFF07406.1| flagellar hook-associated protein FlgK [Escherichia coli B185] Length = 547 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|194432475|ref|ZP_03064762.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1012] gi|194419362|gb|EDX35444.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1012] gi|332092937|gb|EGI98005.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 155-74] Length = 547 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 152/548 (27%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAKDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGPELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 TIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|188492078|ref|ZP_02999348.1| flagellar hook-associated protein FlgK [Escherichia coli 53638] gi|188487277|gb|EDU62380.1| flagellar hook-associated protein FlgK [Escherichia coli 53638] Length = 547 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASVVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|254182888|ref|ZP_04889481.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1655] gi|184213422|gb|EDU10465.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1655] Length = 452 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 67/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATAGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + +A G++ L + + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + LI S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALIEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|167567756|ref|ZP_02360672.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis EO147] Length = 452 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/476 (13%), Positives = 153/476 (32%), Gaps = 32/476 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMF 63 + + A+ + N N Y RR + + V N++ Sbjct: 2 NLIYIGMSGLRAANWSLRATADNTSNLATSGYSRRGVLLSSGANGGVDTSATLRFNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSA---DDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L + +G+ + QS+ E +++ + + + + SL + S + Sbjct: 62 TQQLWTTNGKLGRHKASQSYLDQLERLTSISLPEGKSKTNDLGMGAFFASLNAASTDPGS 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L + V+D + + FN + + + ++ + + + + +N I Sbjct: 122 SVLRQAVLDATGSMTKQFNNMRSTLNEQLRNIEQARVTTVEEINGRAAAIAELNAKIMSG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 A+ D LDQRDV + +S + G+ + + N + V G L + Sbjct: 182 QAAGADVSGLLDQRDVAVDALSGLAGVRVVQQPNGTVDVSLGTGQPLVLGNQAATMAVEH 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ S + + + +A G ++ L + D V+ L + L Sbjct: 242 DA----SGRQTLSLTFGDQTMPVRTASVGGALRGLSDVEDDVLRPQMEALRSLGSQLADL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + PG + T + L+ Sbjct: 298 VNTQLGKGYDMNGQPGKPL----------------ITYDPSTGMLGIDKTLKPDDLAFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + A LI + + V+L + + ++ Sbjct: 342 DPDNPGDNANLRALIELGHSKIDVPGL--------GTVSLENATAVMMAKIGSASRENKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L + + + GV+ EE +++ ++ Y+ + K+I +++ +T L Sbjct: 394 LLETADATRAQAERDWQSVSGVDKDEEAMNILRFKEMYSANMKVISVANELFETTL 449 >gi|254299680|ref|ZP_04967129.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 406e] gi|157809590|gb|EDO86760.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 406e] Length = 452 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATAGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + +A G++ L + + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + L+ S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|320196436|gb|EFW71059.1| Flagellar hook-associated protein FlgK [Escherichia coli WV_060327] Length = 547 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + +L+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSLDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|222032835|emb|CAP75574.1| flagellar hook-associated protein 1 [Escherichia coli LF82] gi|312945644|gb|ADR26471.1| flagellar hook-associated protein FlgK [Escherichia coli O83:H1 str. NRG 857C] Length = 547 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|110641258|ref|YP_668988.1| flagellar hook-associated protein FlgK [Escherichia coli 536] gi|191172473|ref|ZP_03034014.1| flagellar hook-associated protein FlgK [Escherichia coli F11] gi|300982573|ref|ZP_07176195.1| flagellar hook-associated protein FlgK [Escherichia coli MS 200-1] gi|110342850|gb|ABG69087.1| flagellar hook-associated protein 1 [Escherichia coli 536] gi|190907357|gb|EDV66955.1| flagellar hook-associated protein FlgK [Escherichia coli F11] gi|300307154|gb|EFJ61674.1| flagellar hook-associated protein FlgK [Escherichia coli MS 200-1] gi|324013281|gb|EGB82500.1| flagellar hook-associated protein FlgK [Escherichia coli MS 60-1] Length = 547 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNNKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|117928040|ref|YP_872591.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus 11B] gi|117648503|gb|ABK52605.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus 11B] Length = 463 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 73/489 (14%), Positives = 162/489 (33%), Gaps = 49/489 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------------- 48 + A + +NI NA Y R+ + Sbjct: 5 FGSLSTALTALQAERKALEVTGQNIANASTSGYTRQRAVFQGIGGSVVPAMYSRSDGVGA 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + ++ + + + + Q A E + ++ Sbjct: 65 GVVVSEVQRLQNAFLEQRANTENGTLAFLQGSQQTLADIENSFG-EPSTTGIQSLLTTFW 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + + N ++ +I +A+ + N +A + A + + ++ + + Sbjct: 124 NGWDDVANNPADTAARTALIGDAQALASGLNVAAGALSAQWASSRQSLQSVVDQVNAAAQ 183 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +N AI T++ + +D DQRDVL++K++ ++G++T + + V + + Sbjct: 184 DIAALNKAIVAATSAGNQPNDLEDQRDVLIRKLASLVGVTTKPKTDGSTDVLLGGSSLVS 243 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ R + + S + + + +AV G+ ALL + +P + Sbjct: 244 GSLARQLQLGGGTAIDQVSTTP---VTLTWTDTGTTAAVSSGQGAALLTALNVTIPSYAG 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QLD +A L+ + + + + + G D + I++ V Sbjct: 301 QLDSVANQLVTTVNTQHQLGYDLNGNAGGNFFDPTGTTAATIKVAITDPALVAASSVPPS 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + L N+ R I Sbjct: 361 AGQPSLDGGNAQALANMSGTGADA------------------------------AYRKMI 390 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L + Q V N + S + GV+L EE + LI + +Y+ + K + Sbjct: 391 VALGSESNTIQQRTTTQQSVVNQVEASRDSASGVDLDEEQTNLITFQHAYDAAAKYLSVI 450 Query: 469 DKMLQTLLE 477 D +L TL+ Sbjct: 451 DSILDTLIN 459 >gi|331657144|ref|ZP_08358106.1| flagellar hook-associated protein FlgK [Escherichia coli TA206] gi|324007922|gb|EGB77141.1| flagellar hook-associated protein FlgK [Escherichia coli MS 57-2] gi|331055392|gb|EGI27401.1| flagellar hook-associated protein FlgK [Escherichia coli TA206] Length = 547 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|323967023|gb|EGB62449.1| flagellar hook protein FlgK [Escherichia coli M863] gi|327253481|gb|EGE65119.1| flagellar hook-associated protein FlgK [Escherichia coli STEC_7v] Length = 547 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNLEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|190890383|ref|YP_001976925.1| flagellar hook-associated protein [Rhizobium etli CIAT 652] gi|190695662|gb|ACE89747.1| flagellar hook-associated protein [Rhizobium etli CIAT 652] Length = 495 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 164/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGSQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L S + + + Y SP+ Y+ + L+++ + Sbjct: 61 DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I + L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATAVDTLNTLLSQFENANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ L++IS+I+G+S R+NNDMV+ T DGT LFET+PR + F+ Sbjct: 181 TATGADPSSALDEREKTLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFQAQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + Y + N +++DGV + GS +G +++LLQ+RD + P FQ QLDE+AR L+ Sbjct: 241 DVYNASITGNSVYVDGVALPRGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEIARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355 F E++ + + G D G++ TI V+ +P LRDGG Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTISVSSRVITSQGGDPMRLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405 + N L+GY ++ + + FDP A GI++NV+++EYA Sbjct: 361 VNVNGVVNNPTGLSGYTTDLDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 NS+GWLE+ RS++ + + E+YSN GVNL EEL+ L+ +EQSY + K++ Sbjct: 421 NSLGWLEQYRSNATTAAENTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480 Query: 466 MFTDKMLQTLLEG 478 D+ML++LL+ Sbjct: 481 NAVDEMLKSLLDI 493 >gi|153949847|ref|YP_001399640.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] gi|152961342|gb|ABS48803.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] Length = 453 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 151/481 (31%), Gaps = 43/481 (8%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSE 58 A + + NI N Y R+ + + V V R Sbjct: 6 TAFSGMQATQAHLNATSMNIANIHTPGYSRQRAEQSAIGADGQGGINAGNGVNVDAIRRL 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +K +S + + E+M +++ + S ++ SL + ++ Sbjct: 66 SKQYVVMQEWQANSQQQYYEAGEQYLKAVELMVSNE--STSLATGLNNFFSSLSAATQMP 123 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + +I++A + FN + + + ++ ++ I + + N I Sbjct: 124 DSTPMRQQIIESANAMALRFNNVNNFIAQQKNSIGQQRDISIKEINSLTRSIADYNQQIL 183 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + ++ +D LD++++ ++K+S +I + V G L Sbjct: 184 KNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRVSVKQGQPLVNGAVAAELAV 243 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 S + ++ + G++ + + + Q MA+ + Sbjct: 244 DTRSADTKINIH------FSGTTQGMNMSCGGQLGGINDYEFTTLKKLQASTQGMAKTVA 297 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 F+ + + + G + N + Q Sbjct: 298 DEFNTQLKLGSDFTGANGRDLFVFNPGDPNGMLQL------------------------- 332 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 LAG + + F I +V L + A +G++ + + Sbjct: 333 SAITAEQLALAGRGEPSGDSSNLFKLIDIKQKNVVGMNSVRLDDAATTLVGYIAITSNRN 392 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ N + + GVN EE L++ +++Y + K+I DK+ LL Sbjct: 393 YSELENAENTLNQATRYRESISGVNNDEEAINLMEYQRAYQSNMKVIATGDKLFSDLLAL 452 Query: 479 V 479 + Sbjct: 453 I 453 >gi|126463724|ref|YP_001044838.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17029] gi|126105388|gb|ABN78066.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17029] Length = 481 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 168/490 (34%), Gaps = 21/490 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + A + N S+ + N+ NA + + RR+ T + V V Sbjct: 1 MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +A G + +F + D S IS SL + + Sbjct: 61 DRMMNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V+D A+ + ++ V + R AD I +I L L+ + +N Sbjct: 120 SRPESQARLQDVLDRAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + D+ D+R L+ IS I+ + + R N + ++T+ G L + DI Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239 Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 FE S + + ++G+ + + G + G + A +RD + P Q + Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLTVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299 Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD +A+ LIG + D + A L +S +P Sbjct: 300 LDALAQDLIGRMAAADGSLGAGDAGLFTDDGAAFDPAAPAGLASRLSVNALADPDRGGAL 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LRDG + L G++ + A ++ Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAA-------LDARTPHAANGLSGTFSFSGLAAETV 412 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + GV+ E+ L+ +E++Y + K++ Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471 Query: 469 DKMLQTLLEG 478 D +LQ LLE Sbjct: 472 DDLLQYLLEM 481 >gi|77464882|ref|YP_354386.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides 2.4.1] gi|77389300|gb|ABA80485.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] Length = 481 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 169/490 (34%), Gaps = 21/490 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + A + N S+ + N+ NA + + RR+ T + V V Sbjct: 1 MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +A G + +F + D S IS SL + + Sbjct: 61 DRMVNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V+D A+ + ++ V + R AD I +I L L+ + +N Sbjct: 120 SRPESQARLQDVLDKAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + D+ D+R L+ IS I+ + + R N + ++T+ G L + DI Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239 Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 FE S + + ++G+ + + G + G + A +RD + P Q + Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLKVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299 Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD +A+ LIG + D + A L +S +P Sbjct: 300 LDALAQDLIGRMAAADASLGAGDAGIFTDDSAAFDPAAPAGLAGRLSVNALADPDRGGAL 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 LRDG + L + G++ + A ++ Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAALDARTAH-------AANGLSGTFSFSGLAAETV 412 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + GV+ E+ L+ +E++Y + K++ Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471 Query: 469 DKMLQTLLEG 478 D +LQ LLE Sbjct: 472 DDLLQYLLEM 481 >gi|84502375|ref|ZP_01000511.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597] gi|84389187|gb|EAQ01984.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597] Length = 470 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 93/480 (19%), Positives = 171/480 (35%), Gaps = 13/480 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSEN 59 MS+L +++ SQ+ + NI +A ++NY R T V V+ Sbjct: 1 MSILTAILASRSGLQANSQRAQLVSTNIAHAQDENYSHRSLEVTEALGGGVRVIGVARAM 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 D + S +Q + + + + S + +S ++ L S + Sbjct: 61 DTAMDALYRTEMSFAAKQDAMATTLGVYGAELGELDTETSIPNLLSAFQNDLGLLSNDPG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + L + V +A+ + ++ + + A I +IS L EL +N I Sbjct: 121 DASLQQEVYLSAKALTGAIRSANSALNTVETTAVNGIGNDISAANEALRELARINADIGK 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 D+R L K++ I+ I + V+ + G +L + Sbjct: 181 TEQGTETYAALEDRRAAELDKLANIVQIQVSYDTDGRANVHAAGGQSLVVAGHVNEFSFD 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T+ S + +G + + + + VVP + +LDE+AR LI Sbjct: 241 RPTGTLYSGDQDVTPGVAGRRGA-----EQGSLSGYVTLLNDVVPQQRLELDEIARGLIQ 295 Query: 300 SFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 F + D A + + L I+ ++P + S LRD Sbjct: 296 GFEDADTSLAPGQAGLFTNGGMALGSPVTPGLAGRIAVNDAIDPFRGGDLSLLRD----- 350 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 A + + D F+ FDP AG T++++ +I + R D+ Sbjct: 351 -GIGAVTTGAASDNTQVLAFLDFFDTQVAFDPAAGQGATGTIMDFTTGAISQQQARRVDA 409 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + N GVN+ EL L +EQSYN +++ + +M+ TLL Sbjct: 410 ESNLNSLIASSETYRAARLNARGVNIDTELQNLSLIEQSYNANSQALRVASEMIDTLLNM 469 >gi|134280799|ref|ZP_01767509.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 305] gi|125657224|gb|ABN48712.1| flagellar hook-associated protein [Burkholderia pseudomallei] gi|134247821|gb|EBA47905.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 305] Length = 452 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + +A G++ L + + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + L+ S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|218689035|ref|YP_002397247.1| flagellar hook-associated protein FlgK [Escherichia coli ED1a] gi|218426599|emb|CAR07427.1| flagellar hook-filament junction protein 1 [Escherichia coli ED1a] Length = 547 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|215486291|ref|YP_002328722.1| flagellar hook-associated protein FlgK [Escherichia coli O127:H6 str. E2348/69] gi|312968844|ref|ZP_07783051.1| flagellar hook-associated protein FlgK [Escherichia coli 2362-75] gi|215264363|emb|CAS08720.1| flagellar hook-filament junction protein 1 [Escherichia coli O127:H6 str. E2348/69] gi|312286246|gb|EFR14159.1| flagellar hook-associated protein FlgK [Escherichia coli 2362-75] Length = 547 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 63/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSSAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318 ++A + I + + Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372 D DN Q + + + F + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|167725936|ref|ZP_02409172.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei DM98] Length = 452 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 150/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + +A G++ L + + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ + PG + T ++ Sbjct: 298 IDDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + L+ S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|220934400|ref|YP_002513299.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. HL-EbGR7] gi|219995710|gb|ACL72312.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. HL-EbGR7] Length = 637 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 68/446 (15%), Positives = 143/446 (32%), Gaps = 33/446 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS V + + NI N+ + Y R+ + V Sbjct: 7 MS-SGVLGIGVSGLLAFQRALGVTGNNIANSATEGYSRQRIDLSTQIPQFAGNGYFGSGV 65 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + L +SA Q L F + + AD ++ + + + Sbjct: 66 QVSGVNRIFDQFVETQLRNSTSASEQYALYYDFARRVDNLLADP--DSGLAPGLQQFFAA 123 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + + + + + +I AE +V F+ + +++ R + +I+ ++ + + Sbjct: 124 VQDVANDPTSNAARQVLISEAESLVDRFSFLNQRLEEQRNLVNGQIQTTVAEINSLAEAI 183 Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N+ I +D LDQRD L+ ++SE++ ++TI +++ + V+ +G L Sbjct: 184 ADLNEDIVSALGRGGGAPPNDLLDQRDRLVLQLSELVSVNTIEQDDGALNVFIGNGQNLV 243 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + G V + S + G++ ALL +R SV+ + QN Sbjct: 244 LGNRPTVLVADGLGPDPAQMQVGYVSPGATV--DITSYMTGGRLGALLDLRTSVLDVAQN 301 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L A L +F+++ + + G + + Sbjct: 302 SLGRTAIGLAQAFNDQHVLGQDLNGQLGEAFFRVPAPEAIAGASNAATGDLQVEIQDYSA 361 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L D W ++ G A L+E Sbjct: 362 LTLSDYRLRFDGADWQLRREPG----------------GQLLGAVAPGGTLLIEGLSIDT 405 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434 + + L ++ N I Sbjct: 406 SGIAGAATGDTFLIRPTRGGANQIDT 431 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 35/430 (8%), Positives = 101/430 (23%), Gaps = 6/430 (1%) Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + L + ++ L F + + + + ++ Sbjct: 208 QRDRLVLQLSELVSVNTIEQDDGALNVFIGNGQNLVLGNRPTVLVADGLGPDPAQMQVGY 267 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + T + + + + + +N Sbjct: 268 VSP-GATVDITSYMTGGRLGALLDLRTSVLDVAQNSLGRTAIGLAQAFNDQHVLGQDLNG 326 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + I + + ++ + + L + Sbjct: 327 QLGEAFFRVPAPEAIAGASNAATGDLQVEIQDYSALTLSDYRLRFDGADWQLRREPGGQL 386 Query: 236 NFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T+ E I G ++ + + A P + Sbjct: 387 LGAVAPGGTLLIEGLSIDTSGIAGAATGDTFLIRPTRGGANQIDTVISDPRMVAAASPVR 446 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 G + + + N P S + + Sbjct: 447 ASPDGDNTGPAIVRSVIAVDRDALDLTPVTVTYNAGASQFEIGGDTYPLDPSGVTVINHN 506 Query: 355 G----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G + + + ++ + D + TL + Sbjct: 507 GWELTIEGVPDDGDAFQVGPNIGGVGDNRNALALAGLQDQRMMVGGTATLEGTYNTLVAE 566 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + GVNL EE + L++ +Q+Y + ++I T+ Sbjct: 567 VGTRTRQAEIAARAQVKLLDEARAQRESISGVNLDEEAANLLRYQQAYQAAAQVISVTNS 626 Query: 471 MLQTLLEGVK 480 + TL+ V+ Sbjct: 627 LFDTLINAVR 636 >gi|83944166|ref|ZP_00956622.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36] gi|83845033|gb|EAP82914.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36] Length = 472 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 91/483 (18%), Positives = 177/483 (36%), Gaps = 15/483 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRS 57 MSL N A + Q N+ NA YVRR+ + + + R Sbjct: 1 MSLSGALNSATAGLHTTQGQSRIAADNVSNAMTPGYVRREAVLVTASGGQGGAVISEVRR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 E ++ +S + Q + +Q SP + ++SL + Sbjct: 61 EVDATLQRMSRLENSRMTQYQSIQEGLTTYTAYLGQPGDGTSPADRFNDFQNSLTTLVNM 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 S + +V AE++V++ +A + D + EI E+++L L +L +N + Sbjct: 121 PSSNGAQTSVALAAEDLVRSVKGAATTLSTTLNDVNMEIRYEVADLNTALYQLRDLNASG 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T +A F ++ D +L +IS I+ +N + +YT G L E Sbjct: 181 SGFTPGSLEAAQFDEKVDTILDQISGIVDTRIHRSSNGSISLYTVSGAALLEGRV----- 235 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + ++ + + + + + G + L +++ +P F QLDE AR L Sbjct: 236 VQDVTFNPSDGTLMAGNQDITPFKDGVRGIQHGSLAGLSELKRETIPQFSQQLDEYARGL 295 Query: 298 IGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 I +F + D A + L + ++ + +RD Sbjct: 296 IQTFEDADASLAPGEAGLFTDNGNAFDPANITGLASRLQINSKISSTGDAEVWRIRD--- 352 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 IN + + GI VTL +++ I R+ Sbjct: 353 ---GLGATSPGAGSETVQINAFLAGLDTAMNAATGTGIPAEVTLRDFSAEMITSQAATRA 409 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + + N+ GVN+ +E+ L+ +EQSY +++++ +M+ TL+ Sbjct: 410 RAENDFNAAASAAEVVMSARRNSEGVNIDDEMQQLLLIEQSYAANSRVLTAVSEMIDTLI 469 Query: 477 EGV 479 V Sbjct: 470 AAV 472 >gi|167905095|ref|ZP_02492300.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei NCTC 13177] Length = 452 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGRPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + +A G++ L + + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + L+ S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|182680456|ref|YP_001834602.1| flagellar hook-associated protein FlgK [Beijerinckia indica subsp. indica ATCC 9039] gi|182636339|gb|ACB97113.1| flagellar hook-associated protein FlgK [Beijerinckia indica subsp. indica ATCC 9039] Length = 493 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 125/492 (25%), Positives = 221/492 (44%), Gaps = 13/492 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-YVRRDT-MTTISPENVTVVTQRSE 58 MSL + Q+ + S + + RNI A++ Y R+ + + + V V++ Sbjct: 1 MSLTSAMGVTQSALSAFSAETSVTSRNIAGANSTGLYSRKSIDVVSSNNSGVEVLSVTRA 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 L ++ +Q L S D + SP +S L++SL++ + + Sbjct: 61 QNQALFGDLLGSTAVSAKQDALSSGLDALYQTIGDTTDSISPAALLSNLQNSLQTLAASP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S+ + + V+ A+ + N ++ VQ +R AD + +S + L + +N I Sbjct: 121 SDMVQAQDVVGKAQALTDGLNNASSTVQSVRQQADGNMASSVSTINSLLGQFQTLNTQIV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 S D D LD RD +LQ++S +GI+T ++N M ++T G TLF+ R + F Sbjct: 181 SGGKSGADVTDLLDSRDNILQQLSHQVGITTTSNSDNSMSIFTDSGVTLFQDKARTVTFV 240 Query: 239 KMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 +Y + N + +DGV ++ + + GK+ L +RD+V +Q QLD +A L Sbjct: 241 PTTTYVAGTIGNSVMVDGVPITGKSSPMPIQSGKLAGLADLRDNVTTTYQAQLDGIAGTL 300 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLD-------NKLCQGISETICVNPQYRSNPSF 350 I +F+E D + L GI V+P+ N + Sbjct: 301 INAFAESDQSGATPPAASQPGLFTYSGAPALPSSLNMTGLAAGIRVNSNVDPKQGGNLTL 360 Query: 351 LRDGGS---VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 LRDGG S + +N A Y +N +F++ F A ++T+ +L +++ S Sbjct: 361 LRDGGISDPASTTYTYNTTGAASYVGRLNGMLAAFDQTQSFSNAANLSTSSSLTDFSTAS 420 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 WL R + + V + ++ + SN GV+L E+S ++ +EQSY+ S KL+ Sbjct: 421 AAWLNGQRQSASTASDYQKTVVSSVTSALSNATGVSLDTEMSKMLDLEQSYSASAKLMST 480 Query: 468 TDKMLQTLLEGV 479 + M Q+LL V Sbjct: 481 INTMFQSLLTAV 492 >gi|227820876|ref|YP_002824846.1| flagellar hook-associated protein FlgK [Sinorhizobium fredii NGR234] gi|227339875|gb|ACP24093.1| predicted flagellar hook-associated protein FlgK [Sinorhizobium fredii NGR234] Length = 476 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 257/483 (53%), Gaps = 10/483 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + AQ+ + + Q A++ +N+ NA N +Y RR M + + +V+ Sbjct: 1 MSLSSAIAIAQSAFSTTASQTATVSKNVANASNADYSRRMAMLGTTADGAQIVSIYRAQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K S Q L S L + + Y +P+ Y+S RDSL++++ Sbjct: 61 EALLKQNLTSISQSSAQSSLLSGLELLKSALGGNDYETAPSTYLSAFRDSLQTFASTPGN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + TV+ +A ++ + + +A VQ +R D DK+I E+ NL L+ N+A+K Sbjct: 121 STIAATVVADASDLANSISKTATAVQDLRLDTDKQIAEEVDNLNALLASFETANNAVKQA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ DA LD+RD LL+++SE++GIST+ R +ND V+YTSDGT LFET R + F Sbjct: 181 TATGADATAALDERDKLLKQLSELVGISTVTRADNDTVIYTSDGTVLFETQARQVTFTAT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +++ ++ N IFIDGV +S+ G+ +GK+ +LLQ+RD + P FQ+QLDEMAR L+ Sbjct: 241 SAFDASTTGNAIFIDGVSLSAGAGADTTAEGKLASLLQLRDDIAPTFQSQLDEMARGLVS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS- 358 F E DG D + GI+ T+ VN ++NP LRDGG Sbjct: 301 LFQEDGAPGL-------FTWEDGTLPADGTVEPGIAATLSVNAAAQTNPFLLRDGGFNGL 353 Query: 359 -KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +GY DL++ + + + + FD AG+++ +++E+A +SIGW E+ RS Sbjct: 354 VSNPGGATDPNSGYTDLLDGFITAMDGDMDFDAAAGLDSTSSIMEFAASSIGWFEQIRSA 413 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + E+ N GV++ EELS L+ +EQSY S KLI D M+ +LLE Sbjct: 414 ASTADDNKTALLARTEEALGNVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLE 473 Query: 478 GVK 480 V+ Sbjct: 474 AVR 476 >gi|83955134|ref|ZP_00963790.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1] gi|83840463|gb|EAP79636.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1] Length = 472 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 93/483 (19%), Positives = 177/483 (36%), Gaps = 15/483 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRS 57 MSL N A + Q N+ NA YVRR+ M + + R Sbjct: 1 MSLSGALNSATAGLHTTQGQSRIAADNVSNAMTPGYVRREAMLVTASGGQGGAVISEVRR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 E ++ +S + Q + +Q SP + ++SL + Sbjct: 61 EVDATLQRMSRLENSRMTQYQSIQEGLTTYTAYLGQPGDGTSPADRFNDFQNSLTTLVNM 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 S + +V AE++V++ +A + D + EI E+++L L +L +N + Sbjct: 121 PSSNGAQTSVALAAEDLVRSVKGAATTLSTTLNDVNMEIRYEVADLNTALYQLRDLNASG 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T +A F ++ D +L +IS I+ +N + +YT G L E Sbjct: 181 SGFTPGSLEAAQFDEKVDTILDQISGIVDTRIHRSSNGSISLYTVSGAALLEGRV----- 235 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + ++ + + + + + G + L +++ +P F QLDE AR L Sbjct: 236 VQDVTFNPSDGTLMAGNQDITPFKDGVRGIQHGSLAGLSELKRETIPQFSQQLDEYARGL 295 Query: 298 IGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 I +F E D A + L + ++ + +RD Sbjct: 296 IQTFEEADASLAPGEAGLFTDNGIAFDPANITGLASRLQINSKISSTGDAEVWRIRD--- 352 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 IN + + GI VTL +++ I R+ Sbjct: 353 ---GLGATSPGAGSETVQINAFLAGLDTAMNAATGTGIPAEVTLRDFSAEMITSQAATRA 409 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + + N+ GVN+ +E+ L+ +EQSY +++++ +M+ TL+ Sbjct: 410 RAENDFNAAASAAEVVMSARRNSEGVNIDDEMQQLLLIEQSYAANSRVLTAVSEMIDTLI 469 Query: 477 EGV 479 V Sbjct: 470 AAV 472 >gi|158422272|ref|YP_001523564.1| flagellar hook-associated protein FlgK [Azorhizobium caulinodans ORS 571] gi|158329161|dbj|BAF86646.1| FlgK protein [Azorhizobium caulinodans ORS 571] Length = 485 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 137/485 (28%), Positives = 227/485 (46%), Gaps = 5/485 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + F+ A+N N + Q ++ +NIENA N +Y R++ T V Sbjct: 1 MSLTSAFSTARNSLLNTATQLSTSAKNIENASNTSYSRKNANLVSGDAGNTSVVVARAGD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + +S + L + + D + S +S + +L SY+ Sbjct: 61 AALFLKMLDATSNSSKYAALLTGLTTLQSTIGDTETDTSVAARLSTFQTALSSYANAPDN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D LG+ I AE + N+S R VQ +RA+AD I +S + LS+ + NDA+ Sbjct: 121 DTLGQAAITAAENLATALNSSTRTVQSVRAEADANIANSVSKVNDLLSQFKIANDAVIAG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D LD RD +L K+SE +G++T++ NNDM +YT G TLF+ PR + F Sbjct: 181 TVKGDDISDALDARDAVLSKLSEEMGVTTVLGQNNDMKLYTDGGATLFDQSPRSVTFVPS 240 Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T+ N +++DGV V+ ++ + G I ++RD +Q+QLDE+AR LI Sbjct: 241 ATFDGTTVGNAVYVDGVAVTGASSVMPLKSGAIAGYAEMRDVTTVTYQDQLDEVARGLIS 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ----YRSNPSFLRDGG 355 +F E D G GLF + L + ++ TI VN + S LRDGG Sbjct: 301 AFQETDQSGGGGAAKSGLFTNGIDTTVAGGLTRNLAATITVNTAAVVSKGGSVSTLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + +N N A + + + F + + V+L +A +S+ WLE R Sbjct: 361 MNGAAYAYNTTNAASFGTRLAALQTAIKAQQTFSSTTQLTSGVSLQTFASSSVSWLEGLR 420 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + + + + S + SN GVN +E + +++E+SY S+K++ M L Sbjct: 421 TSTTNKSETQKTLLSQASTAVSNASGVNTDQEYATQLQLEKSYQASSKILSAVQSMYDAL 480 Query: 476 LEGVK 480 ++ Sbjct: 481 FSAIR 485 >gi|197285504|ref|YP_002151376.1| flagellar hook-associated protein 1 [Proteus mirabilis HI4320] gi|194682991|emb|CAR43432.1| flagellar hook-associated protein 1 [Proteus mirabilis HI4320] Length = 547 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 76/548 (13%), Positives = 169/548 (30%), Gaps = 74/548 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS + N A + N A ++I NI N Y R+ T+ + V Sbjct: 1 MS-NNLINTAMSGLNAAQAAMSTISNNIANQKVNWYNRQMTVFNENGGTMTSNGYIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E ++ + + + AD N + I S Sbjct: 60 NVSRIHREYNEFLAGQMNRAVTKQSALNSYNKNISQINNLLAD--KGNDVSSAIDDFFTS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + + N ++ T++ AE +V FN + + ++ + D + ++ N+ + ++ Sbjct: 118 LPNVTNNAEDNPARTTILGKAEAMVNMFNKADQSLRDLEKDINSQVTNTTKNINEYSKQI 177 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I + + +D LDQRD L+Q+++ ++ + ++ + V ++G L Sbjct: 178 AKLNQEISRSQGFNGAEPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVSFANGLPLVA 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S V + G++ + R+ V+ +NQ Sbjct: 238 GTRSYEVSAIPSSKNSERLVVGYSNGIDEVREVDAKRINGGELGGAYRSRNEVLDASRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+++A VL F+++ + G + + + + Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLNGDKGDKFFNLGGAHTMPNGKNKGDATFDVKYTDTREV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------DLINHYCDSFNKNFIFDPV 391 D + WNV G + + + + V Sbjct: 358 KAADYTVKYEGGKWNVTVEPGNRKFTATPNATTGELEFEGMSIKVNGAAQEGDSIVVQSV 417 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSD---------------------------------- 417 + +++ + I S Sbjct: 418 GNVIAGMSVAISDPSKIAAAGTKDSGPSDNENMKKLFELPDEKLIDGKATIAGGYGSLIS 477 Query: 418 --------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + I + GVNL EE + ++++ Y + K+I + Sbjct: 478 MVGNKVNTAQVDYDAQNAITSSILTQQQSVSGVNLDEEYGEMYRIQEYYMANAKVIQTAN 537 Query: 470 KMLQTLLE 477 M +++ Sbjct: 538 TMFDAIMQ 545 >gi|256833255|ref|YP_003161982.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM 20603] gi|256686786|gb|ACV09679.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM 20603] Length = 463 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 63/497 (12%), Positives = 144/497 (28%), Gaps = 61/497 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS + + A + N +NI N + Y R+ T Sbjct: 1 MSTFSGLSTALSSLNAQRAAMEITGQNIANVNTPGYTRQRADMTPVSAGQTASLFSQGAK 60 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D + +S+ E + ++ ++ + ++ Sbjct: 61 IGNGVRITDISRLGDIFLDARVRTTTSSASYLTARAEVYERLES-TINEPSDDGISAQLN 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 KL S + S N + V++NA++V Q + V E+E ++ + Sbjct: 120 KLWTSFQDLSNNPQTLATKQVVLENAKQVQQGIASGYSAVSTQWNQVRAEVEAHVTEVNT 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + + +N I+ S + ++ +DQR LL +S + G + +++ VY Sbjct: 180 TATAVAELNGQIRQTLVSGGNPNELIDQRGQLLNSLSALTGSTVRFQDDGTADVYVGGNP 239 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA-----LLQIRD 280 + R + + T +++ N + G+I Sbjct: 240 LVQANASRTLTVAGATAITGATDAASAVKVVWDRPGNPAVSFDGGQIAGKLSALAPATDG 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ N + +A L + + G + A Sbjct: 300 GILTTAANHYNTIAESLADKVNALHNAPPLFDLGAGPYAATL------------------ 341 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + + D ++ + + A I T Sbjct: 342 -------SVAITNPADIQAGAVGAGDFDGSVADALSQLGIATDGPDALWQTAAIAT---- 390 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + D + + + V+ EE L+ +++Y Sbjct: 391 -----------GVAAKATADSATVAYAAQSTAEGLHIAATSVDTDEETVNLLSYQRAYQA 439 Query: 461 SNKLIMFTDKMLQTLLE 477 + +++ D+ML L+ Sbjct: 440 AARVMTTVDEMLDQLIN 456 >gi|227355995|ref|ZP_03840387.1| flagellar hook-associated protein 1 [Proteus mirabilis ATCC 29906] gi|227163983|gb|EEI48885.1| flagellar hook-associated protein 1 [Proteus mirabilis ATCC 29906] Length = 547 Score = 179 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 75/548 (13%), Positives = 169/548 (30%), Gaps = 74/548 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS + N A + N A ++I NI N Y R+ T+ + V Sbjct: 1 MS-NNLINTAMSGLNAAQAAMSTISNNIANQKVNWYNRQMTVFNENGGTMTSNGYIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E ++ + + + AD N + I S Sbjct: 60 NVSRIHREYNEFLAGQMNRAVTKQSALNSYNKNISQINNLLAD--KGNDVSSAIDDFFTS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + + N ++ T++ AE +V FN + + ++ + D + ++ N+ + ++ Sbjct: 118 LPNVTNNAEDNPARTTILGKAEAMVNMFNKADQSLRDLEKDINSQVTNTTKNINEYSKQI 177 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I + + +D LDQRD L+Q+++ ++ + ++ + V ++G L Sbjct: 178 AKLNQEISRSQGFNGAEPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVSFANGLPLVA 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ V + G++ + R+ V+ +NQ Sbjct: 238 GTRSYEVSAIPSNKNSERLVVGYSNGIDEVREVDAKRINGGELGGAYRSRNEVLDASRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+++A VL F+++ + G + + + + Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLNGDKGDKFFNLGGAHTMPNGKNKGDATFDVKYTDTREV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------DLINHYCDSFNKNFIFDPV 391 D + WNV G + + + + V Sbjct: 358 KAADYTVKYEGGKWNVTVEPGNRKFTATPNATTGELEFEGMSIKVNGAAQEGDSIVVQSV 417 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSD---------------------------------- 417 + +++ + I S Sbjct: 418 GNVIAGMSVAISDPSKIAAAGTKDSGPSDNENMKKLFELPDEKLIDGKATIAGGYGSLIS 477 Query: 418 --------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + I + GVNL EE + ++++ Y + K+I + Sbjct: 478 MVGNKVNTAQVDYDAQNAITSSILTQQQSVSGVNLDEEYGEMYRIQEYYMANAKVIQTAN 537 Query: 470 KMLQTLLE 477 M +++ Sbjct: 538 TMFDAIMQ 545 >gi|238794003|ref|ZP_04637621.1| hypothetical protein yinte0001_21180 [Yersinia intermedia ATCC 29909] gi|238726635|gb|EEQ18171.1| hypothetical protein yinte0001_21180 [Yersinia intermedia ATCC 29909] Length = 555 Score = 179 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 81/556 (14%), Positives = 176/556 (31%), Gaps = 81/556 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + + A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E + L SS L ++ + ++ + + +N+ + + + Sbjct: 60 AVTGVNREYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSSTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D KTV+ AE +V F + + ++ + +++I ++ + + ++ Sbjct: 118 LQNLVSNSGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTQINNYADQI 177 Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I +S + + LDQRD L+ ++++I+G++ ++ + V ++G L + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFANGLPLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S T + V S + G + L+ R + +NQ Sbjct: 238 GPDSYKVQAIPSSSDATRLTIGYKYGSGDVLEVDESRLTTGTLGGTLKFRSEALDSARNQ 297 Query: 290 LDEMARVLIGSFSEKD--------------------------------------PIAGNS 311 L ++A V+ SF+ + Sbjct: 298 LGQLALVMADSFNTQHKAGFDTSGEPGTDFFSFAQPNVLKNARNQGDASLTVSYTDTSKV 357 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + DG +L N + L G A Sbjct: 358 KASDYSVEFDGTDWQVTRLSDNTKVPANPVKDGSGNTTGLSFDGVAVSVDNGTTGAQARD 417 Query: 372 PDLINHYCDSFNKNFIFDPVAG-----------------------------INTNVTLLE 402 ++ + + ++ TL Sbjct: 418 KFIVKTVSSVAANLQVEITDSSKIAAAGTADGGASDNVNAQALLSLQTKKLVDGKATLSG 477 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + S + + ++ + GVNL EE L + +Q Y + Sbjct: 478 AYAGLVSNVGNQTSTAKTNSTAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANA 537 Query: 463 KLIMFTDKMLQTLLEG 478 ++I + LL Sbjct: 538 QVIQTASTLFNALLSL 553 >gi|149191159|ref|ZP_01869417.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] gi|148834997|gb|EDL51976.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] Length = 459 Score = 179 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 62/480 (12%), Positives = 142/480 (29%), Gaps = 39/480 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVTVVTQR 56 N + + +N N + Y R+ + V V Sbjct: 5 NIGLSGVLANRVALNTTAQNTANVNTPGYSRQVVSLEATSSGNFVNGINLGAGVEVGDII 64 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L + + + + E + S T ++ +++ S Sbjct: 65 RIAEQSSINRLREATESAQYSQSYFDGLSNIENLLG--ADGLSLTQGLNGFFAAIDEASV 122 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + V+ NA+ + Q FN+ + ++ + A + +S++ L + +N Sbjct: 123 TPESIAFRQQVLTNADALAQQFNSVSAQLSQQEAAQSERYGAIVSHVNSQLESIAALNQK 182 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 ++ D+ D L ++S+++ + I + T +G L Sbjct: 183 LQEDALLGKGVAGLQDEMDKQLNELSKLLDVQVIYTAGGVE-LSTPNGQPLVIGGFSASL 241 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 +S S I + + + G++ AL ++ S + L ++A+ Sbjct: 242 TRDFSSGDPYSTDLSITFQSMTTAVDDS---LGGELGALEALKLSQYEPIKATLADLAKG 298 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L + + G + + S + S+ + Sbjct: 299 LADGVNNALNTGFDLNGAAGQSLFTYTAGSEAHSLAIDSAISAQELAFSSSATL------ 352 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +G D++ V G T +G + Sbjct: 353 ------------SGNGDVLKDLSMLSQTPLTNGSVVGK----TPYSAYSGLLGDIGIFTR 396 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + +Q+ + + VN EE + ++ +Y + K+I ++M QTLL Sbjct: 397 QAESEATAAQISVEDAQVARDSVSAVNSDEEAANMLLYLNAYEANMKVISTANQMFQTLL 456 >gi|300722675|ref|YP_003711965.1| flagellar hook-filament junction protein 1 [Xenorhabdus nematophila ATCC 19061] gi|297629182|emb|CBJ89778.1| flagellar biosynthesis; hook-filament junction protein 1 [Xenorhabdus nematophila ATCC 19061] Length = 546 Score = 179 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 75/548 (13%), Positives = 175/548 (31%), Gaps = 73/548 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51 MS ++ N A + N A + NI N+ + +Y R+ T+ T + ++ Sbjct: 1 MS-NSLMNTAMSGINAAQVAMGVVGNNIANSKSADYNRQTTVMTQNNGTMSPVGFVGNGV 59 Query: 52 -VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E + +A + + + AD + S ++ I L S Sbjct: 60 VVSGINREYSEFITQQHNAAQTKYAALKTYDQQITKINDLLAD--KDTSLSNSIEDLFKS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + N + TV+ AE ++ F + +++I + +IE + + ++ E+ Sbjct: 118 LGTVESNAEDSAARTTVLGKAEGLISRFKETDEYLRQIDNSINSQIEQNVQEINKYAEEI 177 Query: 171 TVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I+ + + + LD+RD + ++++++ ++ I ++ V G TL Sbjct: 178 AKLNDEIRRMRGTGNGEPLALLDKRDEAVNRLNQLVEVNVIQQDGGAYNVSFGGGMTLVS 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S + V +G + LQ+R VV +N+ Sbjct: 238 GNKPYQLEAIPSSTDSARITLGYNNGTSGTREIDERFVSQGALGGALQVRREVVDKTRNE 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN-- 347 L+++A V+ F++ + G+ + K ++ Sbjct: 298 LNQLALVMADQFNQVQHSGFDLNGDKGVDFFNFTKPEIISNSNNKGSAGITVEYADTSKV 357 Query: 348 -----------------------------------PSFLRDGGSVSKKFLWNVKNLAGYP 372 L+ +K + L Sbjct: 358 KASDYTLKFDGRDWKVQRVSDKAMLPVKPTGDTLEFDGLKVKIDAAKAEANDTHTLKTVS 417 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVT---------------LLEYARNSIGWLEK---- 413 +++ + + + + L++ + G Sbjct: 418 NVVATLEVNLKDSSQLATAGAKDGGPSDNRNAKKFLELQDKRLIDGKSSFAGAYASLVSK 477 Query: 414 ---NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + + + GVN+ EE L +++Q Y + ++I Sbjct: 478 VGSDANKVKVGFEAQGHIVDKLHSTRQSISGVNMDEEYGELQRLQQYYLANARVIQTAST 537 Query: 471 MLQTLLEG 478 + +L Sbjct: 538 LFDAILGI 545 >gi|94500248|ref|ZP_01306781.1| Flagellar hook-associated protein [Oceanobacter sp. RED65] gi|94427547|gb|EAT12524.1| Flagellar hook-associated protein [Oceanobacter sp. RED65] Length = 991 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/443 (12%), Positives = 137/443 (30%), Gaps = 18/443 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + NI N D + Y R+D V Sbjct: 1 MAGILEIGISGLRVHQTALTVTGNNIANVDTEGYSRQDASIVSQNPQFQGGVWIGGGARV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R L +S L + + + AD I + + + Sbjct: 61 DDVRRIYDEFLVGQLQKDTSTFNYFDTLSTNAEQIDKLLADP--GTGIQPGIENMFGAFQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + S + V+ ++ +V F + ++ + ++ + L ++ Sbjct: 119 AAIDDPSSLPARQVVLSESQGLVDRFASIDDRLRDSNNILNGQMGTLATQLNTLAESISE 178 Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I+F TAS + ++ LD+RD+ +++ISE++ ++ ++N+ + ++ +G L Sbjct: 179 LNTQIQFATASAQGNYPNELLDKRDLAIKEISELVSVTVATQDNDSVNIFIGNGQPLVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + N ++ + V N + V GK+ LL R V+ +Q+ Sbjct: 239 KDVNRVSVAPGQQDPSR--NALYFERDGVVQNITNEVEGGKLGGLLAYRREVLDPVISQI 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 A L + +E+ + + + G + + D + I + P R Sbjct: 297 GRAAIALQFNMNEQHALGIDIDGQRGGLFFNDVNDPLLASSRVIGDADNEMPDDRDIKVN 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + D ++ + + + + Sbjct: 357 ITDPNELTDSDYKIEFVGPNDYTFRVTRVKDGEEMLTTALSTEFPETFNIDGF--DISFE 414 Query: 411 LEKNRSDSHDLHMKSQVVFNHIS 433 ++ ++ + Sbjct: 415 AGSFKAGDQFYLTPTRNGAKDLD 437 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 111/374 (29%), Gaps = 10/374 (2%) Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L +++ + + K ++ E T + + + I+ R + Sbjct: 621 LTNFTDDPVGFLEQKLFLNGVELTDSLPPTQIKYDESYPDEVPNPIDANFLADRINANFD 680 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + SK + + + I + + T G E Sbjct: 681 FQEQGIVARSDGSKLTIIALNGEDLSIEFQGDNGDSIDVGNGQDTYL---TPTGQAFSEP 737 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + F+ T E + + N+ IK + + + + +L Sbjct: 738 LSKYEGFDFTEGGPYTFEFDVPGQGTFNIELNEEYTTGPDLIKGIEDKINDTLFSYNGEL 797 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + + + V G + +L +GI + Sbjct: 798 QVDIDEKGNILFQ-NRLEISPKGVNGSAKLTMGGQVKVELDEGIEFRTQPPGSNLFEENP 856 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN------TNVTLLEYA 404 + + + G ++ D+ N + GI ++T E Sbjct: 857 EQKPTYFGYELSMDGVPKEGDAFYVDFNDDAVTDNRNGVLLGGIQKKEIIEGDMTFSESY 916 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 ++ + + + S+V+ + ++ S GVNL EE LI+ E YN S ++ Sbjct: 917 GKTVEEVGSITARAQINTESSKVLLQNSEDNVSAVSGVNLDEEAGKLIQYELGYNASAQV 976 Query: 465 IMFTDKMLQTLLEG 478 I + TL+ Sbjct: 977 ISVARDLFSTLIGI 990 >gi|256376483|ref|YP_003100143.1| flagellar hook-associated protein FlgK [Actinosynnema mirum DSM 43827] gi|255920786|gb|ACU36297.1| flagellar hook-associated protein FlgK [Actinosynnema mirum DSM 43827] Length = 459 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 69/491 (14%), Positives = 151/491 (30%), Gaps = 53/491 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------ 49 S + A A + +NI NA + Y R+ T Sbjct: 3 STFSGITSALGGMQAARRGLEVAGQNIANARTEGYSRQRVETAAVGGTANAAFYATPPAT 62 Query: 50 ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V V + S + A E + D+ +N ++ Sbjct: 63 AGSVEVTGITRMADAFLEARGRTEHSKQAYLDGREEILATTEGLF-DEPSDNGLQAQLTG 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + S + N + + ++ ++ V N A+ + D ++ +S + Sbjct: 122 MWKSWTDTADNPGDSAVRNQLVVSSGVVADRLNNLAQTLGGEYNDTRGRLDSTLSEINTG 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L +N A+ A++ LDQRD L ++ E+ G +T + + V + Sbjct: 182 ARRLADLNTAVVQAKQHGLPANELLDQRDQLALRLVELTGGTTSTGADGSLDVQLGGVSL 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + R + + T + S+ + + G ALL+ +++P + Sbjct: 242 VSGSTARSLTLTGSATLTGAAGDPATVRWSDDASA---APLTGGSGGALLEGLTTIMPDY 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 QLD++A L +++ G Sbjct: 299 LAQLDQVASKLATGVNQQHKAGFTPTGAAGGDFF-------------------------- 332 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 S + + ++ + + G + + R Sbjct: 333 --SGTTAATIKVALTSGDQVATSSSATRALDGSNADAISALARSATGPDAS------YRQ 384 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 ++ + + + + + ++ GVNL EEL+ ++ ++SY + +++ Sbjct: 385 TVVKIGMAVQTAASRSATQASITAQVDAARQSSAGVNLDEELTSMLTYQRSYEAAARVMS 444 Query: 467 FTDKMLQTLLE 477 D ML TL+ Sbjct: 445 AVDSMLDTLIN 455 >gi|126445158|ref|YP_001061252.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 668] gi|126224649|gb|ABN88154.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 668] Length = 452 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + K +LE+ S + + Sbjct: 62 TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + S + + + G++ L + + V+ L +A Sbjct: 242 DAAGQQTLSLAFGSQVMPLRAAS----LGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + L+ S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAIATMMGKVGAASQQNRQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|283834449|ref|ZP_06354190.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC 29220] gi|291069996|gb|EFE08105.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC 29220] Length = 458 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 163/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ +T+ + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAITSTIGASSGSANSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYNTQQEYLTQLETVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI + + + + + ++ + + ++ + S + N Sbjct: 120 TTSPDDSALREQVISESGALALRVDNTLDYIDSQSSEIVSQEKAMVAQVNTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S I+ + + + + V +G L Sbjct: 180 QQIAEAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDEGNYNVTLQNGQPLVSGQESS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ +++ + G + AL ++ V+ ++ MA Sbjct: 240 -----TIELDTNADGTQSMSLTFAGTTSSMNTDTGGSLGALFDYQNEVLTPLTGTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + ++ + + + + S+P Sbjct: 295 EQFADAVNTQLAQGYDLNGNPGEPLFIYDENSSDGPLEVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + + +VT+ E + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLDIEGL----GSVTVGEACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I + + Sbjct: 393 SQQNQTEAEAAANVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISTGADIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|253990121|ref|YP_003041477.1| flagellar hook-associated protein FlgK [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781571|emb|CAQ84734.1| flagellar hook-associated protein 1 flgK [Photorhabdus asymbiotica] Length = 547 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 78/550 (14%), Positives = 175/550 (31%), Gaps = 73/550 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + A ++ N+ N Y R+ T+ + V Sbjct: 1 MS-NSLINTAMSGLQAAQIALGTLSNNVANMRVPGYNRQSTVINQNGGTMTSVGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + + ++ L + + G + + + AD N+ ++ I S Sbjct: 60 TVASINRQYNEFINQQLSSAQAKQGALTTYSQQISQIDNLLAD--KANNLSNTIDDFFTS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D T I A+ ++ ++ ++K+ + ++ I ++ + ++ Sbjct: 118 LQNVVSNAEDDAARTTTIGKAKGLMNQLKSADTFLRKMENNINRGIANSADDINNYAQQI 177 Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I + LDQRD L+ ++++++G+S ++ + V + G TL + Sbjct: 178 AKLNGEITRMRGGGSAEPNSLLDQRDQLVNELNKLVGVSVTQQDGDTYNVTFAGGLTLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + V + KG++ L+ R V+ +NQ Sbjct: 238 GTTAYRVEAISSNADSSRITLGYDRGFGDVVEIDERHIDKGELSGTLRARSEVLDNSRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----------------LDNKLCQ 332 L+++A VL F++ + + G K + Sbjct: 298 LNQLALVLGDQFNQVHRSGFDLKGRQGEDFFTINKPDIIANGKNKGSADFKVEYTDTSAV 357 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 S+ D +S K N G IN + V Sbjct: 358 KASDYHLSYDGANWKIQRAADKADISAKVTGNTLEFDGLKVEINPTDVKEYDRYTLKAVN 417 Query: 393 GINTNVTLLEYARNSIGWLEKNRSD----------------------------------- 417 G+ + + + + Sbjct: 418 GVIGGMEINIKDASQLAAAGTKDGGPSDNVNAKKLIELQSKKLVEGKASFSGAYASMVST 477 Query: 418 -------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 ++ + + N + + GVN+ EE L ++Q Y + ++I Sbjct: 478 IGNQTSTANVDLETQRNITNQLRVEQQSVSGVNIDEEYGALQSLQQYYLANAQVIQTATT 537 Query: 471 MLQTLLEGVK 480 + +L+ + Sbjct: 538 LFNAILDLRR 547 >gi|37525847|ref|NP_929191.1| flagellar hook-associated protein FlgK [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785276|emb|CAE14217.1| Flagellar hook-associated protein 1 (HAP1) [Photorhabdus luminescens subsp. laumondii TTO1] gi|37681983|gb|AAQ97871.1| FlgK [Photorhabdus luminescens] Length = 549 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 75/552 (13%), Positives = 170/552 (30%), Gaps = 75/552 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + A ++ N+ N+ Y R+ T+ + V Sbjct: 1 MS-SSLINIAMSGLQAAQIALGTVSNNLANSKVPGYNRQSTVVNQNGGTMTSVGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + + ++ L + G+ + + + AD N+ ++ I S Sbjct: 60 TVTSINRQYNEFINQQLSEARAKQGEFTTYSQQISQIDNLLAD--KANNLSNTIDDFFTS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D T I ++ +V ++ ++K+ + ++ I ++ + +L Sbjct: 118 LQNVVSNAEDDAARTTAIGKSKGLVNQLQSADAFLRKMENNINRGIANSAESINNYAQQL 177 Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I + LDQRD L+ ++++++G+S I ++ + V + G TL + Sbjct: 178 AKLNGEITRMRGGGSAEPNALLDQRDQLVNELNKLVGVSVIQQDGDSYNVSFAGGLTLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ----GSAVPKGKIKALLQIRDS---- 281 ++ + + V G ++A ++ D+ Sbjct: 238 GTTAYRVEAISSNADSSRITLGYDRGFGDVVEIDEKFIDKGQLGGTLRARSEVLDNSRNQ 297 Query: 282 ------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 V+ NQ+ L G E N + + + Sbjct: 298 LNRLALVLGDQFNQVHRAGFDLKGKPGEDFFTFNNPDVIANSKNKGSANFKVEYTDTSVV 357 Query: 336 ETICVNPQYRSNPSFLRDGGS-------------------------------VSKKFLWN 364 + + Y ++ + L Sbjct: 358 KDSDYHISYDGANWKIQHASGKVKVDIAAKVTGNTLEFDGLKVEIDPTNVKENDRYTLKT 417 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGIN----------------TNVTLLEYARNSI 408 V + G + D A N N + + + Sbjct: 418 VSGVIGNMAVNIKDASKLAAAGNKDGGASDNVNAKKLIELQNKKLVEGNASFSGAYASMV 477 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S+++ + + + GVN+ EE L ++Q Y + ++I Sbjct: 478 STIGNQTSEANVDLETQNNITKQLYADQQSVSGVNVDEEYGALQNLQQYYLANAQVIQTV 537 Query: 469 DKMLQTLLEGVK 480 + +LE + Sbjct: 538 TTLFNAILELRR 549 >gi|222099583|ref|YP_002534151.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM 4359] gi|221571973|gb|ACM22785.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM 4359] Length = 860 Score = 177 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 57/454 (12%), Positives = 131/454 (28%), Gaps = 37/454 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + N A + NI NA+ Y R+ + Sbjct: 6 MSMFGILNTALTGIYTHKLAMNVVGHNIANANTPGYSRQRPVIEATPPIPLTTLTQPSIP 65 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V T D ++ + S E + + + N Sbjct: 66 LQMGTGSRVRTIVRLRDAFLDIQYRQVNNRYNYWDTILSNLHFIEQLLS-EPGENGIRSL 124 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + + + V+ A+++V ++++R D D EI +S + Sbjct: 125 VDNFWNAFQEVISDPTNTASKAEVVSRAQQMVSQMKDLYGRLEQLREDIDNEIVQRVSEI 184 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + L +N+ I+ K +D LD+RD +L ++S+++ I+ + + + + Sbjct: 185 NQMIKRLADLNNKIRIGMTLKSPPNDLLDERDRILDELSDLVNINYTEAEDGQITLRIGN 244 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + ++ + + +F+ + GK+KALL +RDS + Sbjct: 245 QIVLNGSTYNEV---RALERPYGRGYHELFVGNAKLIL------SDGKLKALLDLRDSTI 295 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +LDE + + S V + + Sbjct: 296 VKYMRKLDEFVLFTTDAINLIHRDGFESGGVTTNLDFFKKIESFSDDPAIFRIK------ 349 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 N + +++ T+ + Sbjct: 350 --GNRKLEMGPYHTVTGIHSATSVSEITGKTFTSDDLILSFGGGTSSALAVSSGSTINDL 407 Query: 404 AR--NSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 N +G + + + + Sbjct: 408 ISSWNLLGTTLSTGQHAGGYRLYLEDTSGDLRNK 441 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 48/433 (11%), Positives = 109/433 (25%), Gaps = 27/433 (6%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL----RDSLESYSKNLSEDILGKTVID 129 + + D S S + + + T+ D Sbjct: 429 LYLEDTSGDLRNKIFFSLGDSLSKMGFETETRGFLTIKESDFSSLSPGIYKVSVEYTLKD 488 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 +++ + V + L + I D Sbjct: 489 GSKQSETIPIDLSSGVSLSNIASSINSSLHLRAQVYTDPATGENMLVIVPDEFLNFDPSA 548 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 D + + V D + G T F+ + Sbjct: 549 VNVLSDDSFFTEANAFVRNYEVLKYRDTLENVFYGQTGFDPTRAFTITINSTDIEIDPVV 608 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF------QNQLDEMARVLIGSFSE 303 + + ++ + +R + + F L + Sbjct: 609 DTLETLVEKINEKGTGVLADLTPHNSFVLRATSLYDFDLRMMEIKGPQGFFEALGLIDPD 668 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 DP + ++ + +S+ + + P + + VS Sbjct: 669 NDPTTFDWT-NSYTLVSKNDDFDTLRDRFRVSDILTFDRAPHDEPLNIVNQFEVSSSLAS 727 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEYARNS 407 N NLA D + A N + E+ Sbjct: 728 NPNNLAVDIGYALENSDWNAVDIRPTGAANPKLLEMVQNLYTRKMLSNGKESFYEFFGGV 787 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + L + L ++++ I GV+L EE++ +I+ + +++ + K+I Sbjct: 788 VAELGVEAETASSLKTNTEILRQEIDNERERVKGVSLDEEMANMIEYQHAFSAAAKVIST 847 Query: 468 TDKMLQTLLEGVK 480 D+M+QT++ V+ Sbjct: 848 VDEMIQTVINMVR 860 >gi|265993604|ref|ZP_06106161.1| FlgK [Brucella melitensis bv. 3 str. Ether] gi|262764474|gb|EEZ10506.1| FlgK [Brucella melitensis bv. 3 str. Ether] Length = 418 Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 126/417 (30%), Positives = 205/417 (49%), Gaps = 5/417 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGRDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDCTRQVQSLRNDADREIADSVANINDLLAKFEKANQNVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL++ S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQRSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + +NV+ AG+ D + ++F++ +FD AGI+++ +L+ Y+ +S+GWLE Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLE 417 >gi|170680262|ref|YP_001742379.1| lateral flagellar hook associated protein 1 [Escherichia coli SMS-3-5] gi|170517980|gb|ACB16158.1| lateral flagellar hook associated protein 1 [Escherichia coli SMS-3-5] Length = 458 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 LQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|114798876|ref|YP_758980.1| flagellar hook-associated protein FlgK [Hyphomonas neptunium ATCC 15444] gi|114739050|gb|ABI77175.1| flagellar hook-associated protein FlgK [Hyphomonas neptunium ATCC 15444] Length = 483 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 185/491 (37%), Gaps = 21/491 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----VTVVTQ 55 MS+ A A++ SQ+ + N+ NA YVRR + V Sbjct: 1 MSISAAILAARSGLQVTSQKAEIVATNVANASTPGYVRRSLVVGELVNGSQTAGVMANGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S + Q +L S + S +L + Sbjct: 61 ARAGDDAIKAQRRELTSDVAQATVLASTWQTISQRVGNTSSGGGLFRSFSNFETALSAAV 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + G ++D A+ V + N+ + + RA+AD EI + + L ++ +N Sbjct: 121 TSPESTANGSALLDAAKSVARELNSLSEYGAQARAEADSEIAQGVETVNTALKQVQDLNK 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-FETVPRD 234 I + A +D+R +L I+E + I T+ R+ + V T+ G L + R Sbjct: 181 RIASIDRTSEQAATLMDERQRVLDTIAEFLPIQTVQRDAGTIDVLTTQGVYLINGSTARQ 240 Query: 235 INFEKMNSYT-----VTSESNPIFIDGVVVSSNQGSA--VPKGKIKALLQIRDSVVPIFQ 287 I F +++T + + I +DG+ +++ S V G AL +RD VP F Sbjct: 241 IEFTPSSAFTSGQTLANGDLSGISVDGIDLTTGSTSFGAVSGGLFGALFTLRDQDVPAFM 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +QLD +A +I S+ + GLF+ L L IS V+P + Sbjct: 301 DQLDMVANDIITRLSDDAIDPTKTPGEQGLFVDPDAAGLSG-LASRISVNAAVDPAQGGD 359 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 LRD G ++ D+F + + GI + + A Sbjct: 360 IWRLRD------GLGATASGPPGNSATLSAIYDAFTQVKSLNAN-GIQGAFSASDLAAQL 412 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + R + +Q + E+ + GV++ E+ L+ +EQ+Y + ++I Sbjct: 413 SSVVGQKRVYQDSVLASTQAQHVTLVEAEQSLTGVDVDVEMESLLLIEQAYAANARVIQV 472 Query: 468 TDKMLQTLLEG 478 M+ L+E Sbjct: 473 ARDMIGILMEL 483 >gi|325497610|gb|EGC95469.1| flagellar hook-associated protein FlgK [Escherichia fergusonii ECD227] Length = 548 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 60/549 (10%), Positives = 154/549 (28%), Gaps = 75/549 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + + + N+ + + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++++G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVNELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPI-------------------------------------- 252 + + + Sbjct: 239 SSARQLAAVPSHADPSRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298 Query: 253 ---------------FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + GK L +++ + ++ ++VL Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ AG + + D + + Sbjct: 359 ATDYTITWQGAGKWQVTRLASNTSFTVEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418 Query: 358 SKKFLWNVKN--------LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 +VK + + + + + + + Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538 Query: 470 KMLQTLLEG 478 + L+ Sbjct: 539 TLFDALINI 547 >gi|291288372|ref|YP_003505188.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus DSM 12809] gi|290885532|gb|ADD69232.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus DSM 12809] Length = 584 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 78/579 (13%), Positives = 192/579 (33%), Gaps = 100/579 (17%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS L+ +F+ + + NI N + + Y R+ + + Sbjct: 1 MSNLMHIFSTGVSGLFASQAGIDVTGNNISNVNTEGYSRQRVVLETANPEKNSQGVFGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V+V T +M + SS + LQS + + + + + D Sbjct: 61 VSVETVERIYDDMLASSIRNESSDLAYYETLQSALSKVTIYFNELEDGSGLGEAMQNYFD 120 Query: 110 SLESYSKNLSEDI-----LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + ++ T++++A + S +++I+ +++ + ++ + Sbjct: 121 AWGDLANTAPDESDEALIKRATLVESASVLADKIQASYASLEEIKNESNLLVSDYVNEIN 180 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N I + A+DF DQR VLL +++EI +S R+N + VY Sbjct: 181 NISENIAYLNKEIARIESGGDTANDFRDQRQVLLNRLAEISNMSVTERSNGQVAVYIGGN 240 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + E ++ E+ + + + +A G+I L +RD ++ Sbjct: 241 AIVDEATRFELKAEQADEDSDDVSIFWGTEGQSNKLVDITNAFTSGEIAGELYVRDELIQ 300 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------------- 331 +Q+QLDE+A V+I ++ + + + + ++G+ + Sbjct: 301 GYQDQLDELANVMITETNKIHSLGQGTNRLTQISSSNGVTNPTYTFSEPAGAFPIEIQAG 360 Query: 332 -------------------------QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ I NP+ S+S Sbjct: 361 TLRISIYDTEGNKVEDLDIVIDPAKDNLNSVIAKISAADGNPNGGMIQASMSSGNTIKFT 420 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL--LEYARNSIGWLEKNRSDSHDLHMK 424 + +GY +F + T+ + ++ ++ +++ + + Sbjct: 421 SGSGYDFTFAEDTSNFLVASGTYGFFAGSDASTIAVSDIIMSNNSYIATSQTGAAGDNQN 480 Query: 425 SQVVFNHISESYSNTVGVNLQE-------------------------------------- 446 + + + + ++ V + E Sbjct: 481 AAAIADLKDTNIMTSMDVTVDEFYAYFAASIGSDKATVDIYVTTKTQAMSELELKLEEVK 540 Query: 447 ------ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 E++ L+K ++++ S++ I D+ML+ L+ + Sbjct: 541 GVSMDEEMTNLMKFQRAFEASSRFITVVDEMLEKLVNSL 579 >gi|331671810|ref|ZP_08372606.1| flagellar hook-associated protein FlgK [Escherichia coli TA280] gi|331070799|gb|EGI42158.1| flagellar hook-associated protein FlgK [Escherichia coli TA280] Length = 458 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|182412215|ref|YP_001817281.1| flagellar hook-associated protein FlgK [Opitutus terrae PB90-1] gi|177839429|gb|ACB73681.1| flagellar hook-associated protein FlgK [Opitutus terrae PB90-1] Length = 484 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 68/497 (13%), Positives = 165/497 (33%), Gaps = 47/497 (9%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49 MS L A N + S+ + +N+ N +N +Y R+ + Sbjct: 1 MSGLFASLNSTVGALSAHSRSIETAGKNLANVNNASYARQRVVYGDRGTIVTPDGAYSLG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-------------HY 96 + + + + D + +S Q + D Sbjct: 61 LEALGVQQLRDMLIDNQVTRETSLTSYFAAQQKAYQRAQAALGQDISSVGSSVSASASTS 120 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + L ++ + ++ N ++ + ++++ A + + + + +++AD +I Sbjct: 121 DAGIGAGLDDLFNAFQGFASNPTDTGIRQSLLQTASILTDRVQLADKRLAQVQADLHSQI 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + ++ + L+ ++ +N+ I A D DQR L+K++ + I + Sbjct: 181 QTDVGEANKLLATISDLNNQIARFEVERPGSAVDLRDQRQAALEKLATKLTIDVQEISTG 240 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 ++V + + + +S T +P + + G I+ Sbjct: 241 QVIVSSP------DANGAPVVLVDSDSITGPVSFDPATDTISAGTPTTVLGLTSGAIQGS 294 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 L + V ++QL +A+ L S +E DG D ++ Sbjct: 295 LSAHNEGVQPLRDQLTLIAQQLTASVNEIYNPG-GVAADDFFATLDGNGDPITAGTFQLA 353 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + ++ AG + + F Sbjct: 354 SGLTAFSLHAND---------------GTAGAPAGDNSVALAIAQLATRRFSTTGAPPDL 398 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + TL + +++ L + + + + + + GV+L EELS L+K + Sbjct: 399 IDGTLSSFYSSAVSGLGQATAGATTRLNSQESIEQLVRSQRDAVSGVSLDEELSDLLKYQ 458 Query: 456 QSYNISNKLIMFTDKML 472 +++ S+++ DK+L Sbjct: 459 RAFQASSRVFQTIDKLL 475 >gi|294635619|ref|ZP_06714095.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC 23685] gi|291091002|gb|EFE23563.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC 23685] Length = 552 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 74/555 (13%), Positives = 161/555 (29%), Gaps = 83/555 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + N A A NI + Y R+ + V V Sbjct: 1 MANLINNAMSGLNAAQTALAVTSNNINHVYTAGYNRQSVSFAENNGTSTPAGFIGNGVVV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 E L S + + + + AD NS + + +L+ Sbjct: 61 SGINREYNQFIVNQLRQGQSTLATTATYHQQISQIDDLLAD--STNSLSANMQNFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S+ +TVI NA + F T+ ++ + ++ + + + + ++ Sbjct: 119 NLVSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESNTNLTVSNSAEQINDYAKQIAS 178 Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T + +D LDQRD + ++++II + +++ + + G +L + Sbjct: 179 LNNRISELTGASGGTAPNDLLDQRDQMASELNQIIDVDISMQDGAM-NISFAGGLSLVQG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI--------RDSV 282 +S + + G +S + + G + + + R+ + Sbjct: 238 GDAYGVKAVPSSSDPSRT-TLAYDRGNGLSEVPEARIRGGSLAGVYRFRSEALDNTRNQL 296 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 I + +V G+ + E I Sbjct: 297 GQIALSMAHAFNQVQAEGVDLNGEKGGDLFGFAQPESLANGNNTSKASLSASYEDIDKVQ 356 Query: 343 QYR-------------------------------------------------SNPSFLRD 353 ++ LR Sbjct: 357 ATDYRVDFKDGKWNITRLADGSQQTVTPKKDGSDTVLKFDGLKVKINDTPAENDSFKLRT 416 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------INTNVTLLEY 403 +V F + + A + + A + TL Sbjct: 417 TSTVVSGFDVKISDPAKIAAASLASGTGKDHEVGDNTNAQKMLDLQNKKLVGGKATLSGA 476 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +G + + S + + V ++++ + GVNL EE L++ +Q Y +++ Sbjct: 477 YAGLVGTVGNQTNSSKVDNKAQENVVKQLTKAQQSVSGVNLDEEYGNLVRFQQYYMANSQ 536 Query: 464 LIMFTDKMLQTLLEG 478 +I M LL Sbjct: 537 VIQTATTMFNALLSI 551 >gi|300114793|ref|YP_003761368.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii C-113] gi|299540730|gb|ADJ29047.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii C-113] Length = 647 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/430 (13%), Positives = 133/430 (30%), Gaps = 17/430 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M + + A + A+ NI N + + R+ V Sbjct: 1 MPSSDLLGIGASGLLAAQRALATTSHNIANVNTPGFSRQRAELAARLPEFTGQGFIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T R + + +S Q + A + + AD + ++ Sbjct: 61 DVTTVRRAYDSFLTEQARHATSEYAQSKAFHDLAAQVDNLFAD--SETGLSTSSQHFFNA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + + S + ++ E + + ++ + ++ ++ + S + Sbjct: 119 AQALANDPSSPAARQMLLTEGETFEARVRSLDGRLSELDEGINTRLQATVAEVNTLSSSI 178 Query: 171 TVVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N I+ + +D LDQRD L+Q +S+ ++ + +++ + V+ G +L Sbjct: 179 AGLNQQIRDLRGQHNDQPPNDLLDQRDQLIQDLSQKAAVTVLPQDDGSLNVFIGKGQSLV 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 NSY + G V + ++ G++ ALL RD V+ +N Sbjct: 239 TGDHSHSLTTLANSYEASRLEVGYATKGGVTPISD--SIQGGELGALLSFRDEVLEPSRN 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L ++A + SF+E+ + + + G I T + Sbjct: 297 ALGQLAVGVAQSFNEQHRLGMDPQGELGGDFFAPIDSNTAVSLPRADNTGDGVIAVAISD 356 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYARNS 407 + L D +F D + T+ ++ Sbjct: 357 ASKLTDSDYRLDRNGAGFTLTRLSDNQAFSLSAFPGGAETVDGLTLNLTSGSINGGDSYL 416 Query: 408 IGWLEKNRSD 417 I Sbjct: 417 IQPTRTAAQQ 426 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 48/389 (12%), Positives = 107/389 (27%), Gaps = 9/389 (2%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 ++S S S + LG+ + A+ + ++ Sbjct: 266 GGVTPISDSIQGGELGALLSFRDEVLEPSRNALGQLAVGVAQSFNEQHRLGMDPQGELGG 325 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D I+ + A+ ASK D+ R+ ++ + Sbjct: 326 DFFAPIDSNTAVSLPRADNTGDGVIAVAISDASKLTDSDYRLDRNGAGFTLTRLSDNQAF 385 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T DG TL T + +SY + G+ + ++ G Sbjct: 386 SLSAFPGGAETVDGLTLNLT---SGSINGGDSYLIQPTRTAAQQFGMAL-TDSARIAAAG 441 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 I+ + + L + + + ++ LD Sbjct: 442 PIRTEANLGNGGTGQISAAAVTNTTGLPLPPNGEVTLTYDAAARQFNVSGGPGGTLDFDP 501 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + P + + L + ++ + + Sbjct: 502 ATESNGKEFDLPSVGGLNFIIS-----GVPADGDTFMLQNNTGGVGDNRNALSLAGLQTK 556 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + ++ E + + + + + + GVNL+EE + Sbjct: 557 PIFQDGTMSYQEQYGRLVAEVGARTRQAEANQDTHKTLLDQAVAEKEGVSGVNLEEEAAN 616 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LI+ +Q++ + ++I D M QTLL V Sbjct: 617 LIRFQQAFQAAARVISTADTMFQTLLGAV 645 >gi|170021354|ref|YP_001726308.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739] gi|169756282|gb|ACA78981.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739] Length = 458 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASSVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|188492642|ref|ZP_02999912.1| flagellar hook-associated protein FlgK [Escherichia coli 53638] gi|188487841|gb|EDU62944.1| flagellar hook-associated protein FlgK [Escherichia coli 53638] Length = 458 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|291526818|emb|CBK92404.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1] Length = 569 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 82/566 (14%), Positives = 170/566 (30%), Gaps = 91/566 (16%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------S 46 F + N+ + N+ N + YVR+ + S Sbjct: 5 FGSFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQS 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V+V DK + G L S + E + + IS+ Sbjct: 65 GLGVSVSDVAHVRDIFLDKSYRQENGRKGFYSTLYSTTSYVEDIMQ-EMNGAEFKESISE 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 L + + Y K+ + +I +E + NT ++QK +++ + +I+ ++ + Sbjct: 124 LWQAFQEYGKDPTNSTKQNLIIQKSELFLTRCNTVYSDLQKYQSNINLQIKDQVDRINEI 183 Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++ +N I+ + A D RD L+ +++ I + + + Sbjct: 184 GDKIYALNLEIQKTESGGVETAMTARDARDSLIDELAGYAKIEAEEDSTGYVRIKLEGQQ 243 Query: 226 TLFETVPRDINFEK----------MNSYTVTSESNPIFID-------------GVVVSSN 262 + + I + T P+F D + Sbjct: 244 FVQDNKCNHIGLTEEKGTGFYTPYWPHITTQESYMPVFSDVALPSALAERVGCTQTTNIA 303 Query: 263 QGSAVPKGKIKALLQIR-------------------DSVVPIFQNQLDEMARVLIGSFSE 303 G +KALL R D+VV Q ++ +AR ++ + ++ Sbjct: 304 TSLNNDIGSLKALLVSRGSEYGTYDFMSEENYSRVEDNVVMETQAEISYLARNIMMAMND 363 Query: 304 ----------------------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + P A D ++ + N Sbjct: 364 IFCPNTTYTAADGTTYTVLDTANCSVGADGSLPPHELFAREGYDRYTQMEIDGKQFYVYN 423 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNV-----KNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + ++N S G+VS + D K + + + Sbjct: 424 DETKANNSSWYKLGNVSVNPKLAAQVTLMPSYKQDGSANYGLADQITKAWSAENLYINPK 483 Query: 397 NVT---LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + Y I L N S I + +GV+ EEL+ +IK Sbjct: 484 DTSKCNFEGYYDKIISHLGTNGSIYKASSDTMTSTAAAIDNQRNQIMGVSSDEELTNMIK 543 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 + +YN S++ I +M + +++ + Sbjct: 544 YQSAYNASSRFITVISQMTELIVQLI 569 >gi|118589965|ref|ZP_01547369.1| flagellar hook-associated protein K [Stappia aggregata IAM 12614] gi|118437462|gb|EAV44099.1| flagellar hook-associated protein K [Stappia aggregata IAM 12614] Length = 454 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 209/443 (47%), Gaps = 10/443 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + V + L + +S Q + + + D S + L Sbjct: 12 GGLKVDGIGRVTDSALYSSLLSSTSTGSSQEAVLAGLIRLAETTGDTQNQMSAAAKLGAL 71 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + SL+SY+ + S I + V+ ++++V+ + + VQ +R AD ++ + + L Sbjct: 72 KLSLQSYASDPSNAIQAQDVLQASKDMVRTLQSGSELVQDVRTKADADMATSVREINTLL 131 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +L +N I T S D D D RD +L K+SE IGI+T+ R+N D+VVYT G TL Sbjct: 132 KQLEDLNSVIVRGTQSGADVTDAHDSRDQVLLKLSEEIGITTLNRSNGDIVVYTDSGVTL 191 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIF 286 FET R + FE Y + N + +D V V + G+++ L ++RD V + Sbjct: 192 FETKARSVTFEPTIVYGAATTGNSVMVDDVPVAGPGALMEIKSGRLQGLAELRDEVAVTY 251 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICV 340 Q+QLDE+AR LI +F+E D G + + GLF G + I+ Sbjct: 252 QSQLDEIARGLIEAFAESDQSGGGNPDQAGLFTWSGAPAVPASGTLVTGLAAEIAVNANA 311 Query: 341 NPQYRSNPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 +P + LRDGG + +N AG+ D + +F+K+ +FD ++ Sbjct: 312 DPDQGGDLDRLRDGGISDPLDPNYNYNPSGAAGFSDRLQELVSAFDKDTVFDSGVELDAT 371 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 +L +A +S+ WLE R V+ + +E+ +N GVN+ EE++ L+++E+S Sbjct: 372 DSLSGFAASSVSWLEAGRKTMTSNVEVQTVILSRTAENLNNKTGVNIDEEMTLLLEIERS 431 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y+ + +LI D ML+ LL + Sbjct: 432 YSAATRLISAVDAMLEDLLAAAR 454 >gi|331645424|ref|ZP_08346528.1| flagellar hook-associated protein FlgK [Escherichia coli M605] gi|59889786|emb|CAH19142.1| Lateral flagellar hook associated protein 1 (FlgK-like) [Escherichia coli] gi|284920050|emb|CBG33107.1| lateral flagellar hook associated protein 1 (FlgK-like) [Escherichia coli 042] gi|331045586|gb|EGI17712.1| flagellar hook-associated protein FlgK [Escherichia coli M605] Length = 458 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|327254560|gb|EGE66176.1| flagellar hook-associated protein FlgK [Escherichia coli STEC_7v] Length = 458 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 155/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + G +VT+ + + I + Sbjct: 349 ----------------DESGNSDNLQALINISTEPLEIGNLGSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 TQQNQTEVTAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|296445195|ref|ZP_06887155.1| flagellar hook-associated protein FlgK [Methylosinus trichosporium OB3b] gi|296257369|gb|EFH04436.1| flagellar hook-associated protein FlgK [Methylosinus trichosporium OB3b] Length = 495 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 149/495 (30%), Positives = 234/495 (47%), Gaps = 16/495 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MSL A S Q + + RNI A Y + ++ + + V V Sbjct: 1 MSLSNAGAIANQSLGAISSQISLVSRNIAGASTTGYAAKTSLLSTNASGGVDVNGVARAT 60 Query: 60 K-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRDSLE 112 +F L A S L + L ++ D + SP ++ L +L+ Sbjct: 61 SLALFQNALQATSGQAASSALSSGLDQLDQLYGLSTSTATDTSSSRSPAALVAALSSALQ 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 SYS + S+ ++V+ A+ + Q+ N + VQ +RA AD +I + ++ L + Sbjct: 121 SYSASPSDLTTAQSVLTAAQSLAQSLNDGSTAVQNMRAQADGDIATAVDDINSLLGQFQK 180 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N AI T + D DQRD LL K+S IG+ TI R NNDMV+YT G TLFET Sbjct: 181 ANAAIVSGTQTGRDVSALEDQRDELLNKLSADIGVRTITRANNDMVIYTDSGATLFETTA 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 R+++F Y+ ++ + +++DGV V+ + + GK++ L Q+RD V P FQNQLD Sbjct: 241 RNVSFTATAGYSASTVGSSVYVDGVPVTGADAAMPIQSGKLQGLTQLRDVVAPQFQNQLD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLF----IADGIKDLDNKLCQGISETICVNPQYRSN 347 E+AR LI SF+E D G + + L I+ +P + Sbjct: 301 ELARGLIVSFAETDQTGGGASAPGLFTYSDATDVPSVGIIPGLAGQITVNANADPTKGGS 360 Query: 348 PSFLRDGGS---VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 LRDGG + F +N AGY D IN + + FD AG+ TN ++ +YA Sbjct: 361 LDRLRDGGISDPGNSAFDYNATGDAGYTDRINQLITALSTPQDFDTTAGVGTNQSVADYA 420 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +SIGWLE R + + + + S++ SN GVNL +++S ++ +E +Y+ S KL Sbjct: 421 SSSIGWLEAQRQQASSSASYQETLVSQTSQALSNATGVNLDDQMSQMLDLENAYSASAKL 480 Query: 465 IMFTDKMLQTLLEGV 479 + D M + L + + Sbjct: 481 LAAVDAMYKALFQAL 495 >gi|315125990|ref|YP_004067993.1| lateral flagellar hook-associated protein [Pseudoalteromonas sp. SM9913] gi|315014504|gb|ADT67842.1| lateral flagellar hook-associated protein [Pseudoalteromonas sp. SM9913] Length = 435 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 82/481 (17%), Positives = 164/481 (34%), Gaps = 50/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57 MS+ N A + N A+ +N+ NA + Y R+ S V V + Sbjct: 1 MSM---LNNALSGLNAANIALTVSGQNVANAAVEGYSRQQAQFKTSNVYLGGVEVASVDR 57 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + +S QS+ E + D N + ++ L D+L + + Sbjct: 58 VVDAFLNDDIWRTNSDTTYYENKQSYLGFIEQIIGTDSLN--LNNSLASLTDALNAAATK 115 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + +AE +Q+ + + ++ N+ ++ +N +I Sbjct: 116 PDSQAFRQQFLSSAEGFMQDIAQINGALAGQATKLNAQMSNVALNVSSITKQIAEINSSI 175 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 TA+K + D R+ L+ ++S IG+S + R+N + + T G L Sbjct: 176 GLATANKQSTAELKDNRERLVNQLSGHIGVSIVERDNGFIDISTLSGAPLVVGSKAASIS 235 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + T +D G+ L+ + + V+ L+ + L Sbjct: 236 VNGTTVTSNFIGQEFTLD----------KNVGGQFGGLISVDNDVIKPTLATLNSLVADL 285 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + N PG + TI +NP ++ +D + Sbjct: 286 ADDMNGALQSGFDLNNDPGEALFTYNPLNP-------LGTIEINPAITTDKLGFKDSSTS 338 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 N+ N+ +AG TL +G L Sbjct: 339 GPGDNSNIANIVA-------------------SMAGKGDKFTL------LVGDLAITSKQ 373 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + + + + GVNL EE + L+ +Q Y+ + K+I D+M ++LL+ Sbjct: 374 NLNSITTATNLSENAIAARDSYSGVNLDEEAANLMHFQQMYSANAKVISTADQMFKSLLQ 433 Query: 478 G 478 Sbjct: 434 M 434 >gi|238922533|ref|YP_002936046.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|238874205|gb|ACR73912.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|291526373|emb|CBK91960.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM 17629] Length = 569 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 82/566 (14%), Positives = 170/566 (30%), Gaps = 91/566 (16%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------S 46 F + N+ + N+ N + YVR+ + S Sbjct: 5 FGSFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQS 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V+V DK + G L S + E + + IS+ Sbjct: 65 GLGVSVSDVAHVRDIFLDKSYRQENGRKGFYSTLYSTTSYVEDIMQ-EMNGAEFKESISE 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 L + + Y K+ + +I +E + NT ++QK +++ + +I+ ++ + Sbjct: 124 LWQAFQEYGKDPTNSTNQNLIIQKSELFLTRCNTVYSDLQKYQSNINLQIKDQVDRINEI 183 Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++ +N I+ + A D RD L+ +++ I + + + Sbjct: 184 GDKIYALNLEIQKTESGGVETAMTARDARDSLIDELAGYAKIEAEEDSTGYVRIKLEGQQ 243 Query: 226 TLFETVPRDINFEK----------MNSYTVTSESNPIFID-------------GVVVSSN 262 + + I + T P+F D + Sbjct: 244 FVQDNKCNHIGLTEEKGTGFYTPYWPHITTQESYMPVFSDVALPSALAERVGCTQTTNIA 303 Query: 263 QGSAVPKGKIKALLQIR-------------------DSVVPIFQNQLDEMARVLIGSFSE 303 G +KALL R D+VV Q ++ +AR ++ + ++ Sbjct: 304 TSLNNDIGSLKALLVSRGSEYGTYDFMSEENYSRVEDNVVMETQAEISYLARNIMMAMND 363 Query: 304 ----------------------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + P A D ++ + N Sbjct: 364 IFCPNTTYTAADGTTYTVLDTANCSVGADGSLPPHELFAREGYDRYTQMEIDGKQFYVYN 423 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNV-----KNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + ++N S G+VS + D K + + + Sbjct: 424 DETKANNSSWYKLGNVSVNPKLAAQVTLMPSYKQDGSANYGLADQITKAWSAENLYINPK 483 Query: 397 NVT---LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + Y I L N S I + +GV+ EEL+ +IK Sbjct: 484 DTSKCNFEGYYDKIISHLGTNGSIYKASSDTMTSTAAAIDNQRNQIMGVSSDEELTNMIK 543 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 + +YN S++ I +M + +++ + Sbjct: 544 YQSAYNASSRFITVISQMTELIVQLI 569 >gi|323171070|gb|EFZ56719.1| flagellar hook-associated protein FlgK [Escherichia coli LT-68] Length = 458 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|327192295|gb|EGE59260.1| flagellar hook-associated protein FlgK [Rhizobium etli CNPAF512] Length = 486 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 259/485 (53%), Gaps = 8/485 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I N QQ + I NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNSVQSIFNTTGQQSSVISTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y+S + +L++++ + S Sbjct: 61 TALLAQYLQSNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLSAFQQALQTFATSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A+++ + NT++ VQ IR +AD EI ++S+L LS+ N+A+K Sbjct: 121 TTSAQSAVTAAQDLANSLNTASDGVQSIRTEADAEIATQVSSLNTLLSQFETANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ LL++IS I+G++++VR+NNDM +YTSDGT LFETVPR + F Sbjct: 181 TATGADTSSALDEREKLLKQISSIVGVTSVVRDNNDMALYTSDGTVLFETVPRTVTFVPT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y +E N I+IDGV + + +GS G ++ALLQ+RD + P FQ+QLD++A+ L+ Sbjct: 241 TTYVAGTEGNAIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQDQLDQIAKALVQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD------NKLCQGISETICVNPQYRSNPSFLRD 353 FSE D + + + IS + V + + LRD Sbjct: 301 VFSETDGSTSAPGLFVWTTASGTAGETPSESDDITGIASTISVNLAVVTSEGGDATKLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G++S N +G+ D ++ + + F AG++++ +L +YA SIGWLE+ Sbjct: 361 -GTISGITDLNTSGDSGFSDNLDALYTALTEQRTFSADAGLSSSQSLTDYASASIGWLEQ 419 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 RSD+ + + E+YSN GVNL EEL+ L+ +EQSY + K++ D+M Q Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNEAGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479 Query: 474 TLLEG 478 +LL+ Sbjct: 480 SLLDI 484 >gi|88799029|ref|ZP_01114610.1| Flagellar hook-associated protein [Reinekea sp. MED297] gi|88778256|gb|EAR09450.1| Flagellar hook-associated protein [Reinekea sp. MED297] Length = 1025 Score = 174 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 118/383 (30%), Gaps = 21/383 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MSL + A + NI NA+ Y R++ + + + V Sbjct: 1 MSL---LSTAITGIKAHQTALETTGHNISNANTPGYSRQEAVMATNNPLFRGVGYIGQGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + T R L +S + + + + ADD + + + Sbjct: 58 NISTVRRVTDEFLTIQLRQDTSTFHDLQTYRESIEQVDRILADDA--TGLQPQLDRYFAA 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ + N + V+ A+ +V F T +R +Q I + + +++ + + Sbjct: 116 LQGAADNPAYIPSRDVVLGEAQGLVDRFETISRYLQDINSTLNGQLKTSTEQVNAIAKGI 175 Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N+ I A+ +D D+RD L++++SE++ + + + +G L Sbjct: 176 AELNEEIVTARGDAAAQPPNDLYDKRDELVRQLSELVEVDVVKVGETY-NIAIGNGQPLV 234 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + + + G I L+ R + + N Sbjct: 235 LKYDANRLEATPSLEDPNRYGIRYT--SKTENLDITDNITGGSIGGRLEFRSEALDLAVN 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD-GIKDLDNKLCQGISETICVNPQYRSN 347 L +A + + + + E G T N Sbjct: 293 SLGRLAVAFVQETNAQHKQGIDLEGRFGNDFFRDMNDPSLTGDRVYAYGTNKPPNDRVFN 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAG 370 +F + ++ N+ Sbjct: 353 VTFENTKELTTSEYTLNLPGPDA 375 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 55/448 (12%), Positives = 116/448 (25%), Gaps = 16/448 (3%) Query: 34 KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93 Y V VT R+ + ++S+ ++ ++ Sbjct: 590 TGYGASAYEIAEELNLVEGVTARAYTEVQLSNF--SNSTDTSGAPTYNPHNPMEVWVNGF 647 Query: 94 DHYNNSPTHYISKLRDSLESYS---KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + P + D N + +++ + + Sbjct: 648 ELTQEIPNQNQNIYMDGFPVEVPEEMNPNFLADRINHHYELQQLGITAKSDGETLTITDE 707 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + + + V++ A + D++D D E + Sbjct: 708 NGNDILVEMRGD-----KPQPVISGAPVLPPGIPGNVTDYIDPGDTFEISTGESWSVDPF 762 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 N + + +G E P + T T + I+ DG V + Sbjct: 763 E-GNTNGQLSNLNGYDFSEGGPYRYEMYLPDGRTGTVRLDGIYADGDAVKAAFEEQ---- 817 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 I+A L Q + +V + + + Sbjct: 818 -IQAQLDSPGRAEVDIDEQGNVSYKVFMRVEGTGTQAVSRVNVGGQVDVVMADGIRLETD 876 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + V S F G + N D Sbjct: 877 PEVGGIFNGVPDARSSYMGFQFQVGGRPEAGDEFTIEWNDAGVSDNRNALDLVGLETTDT 936 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + I+ +T E ++ + S + S+ V + GVNL EE + Sbjct: 937 INDIDGGMTFTESYSQTVEQIGTLTSQAQIRSDASRAVLEGTQSEVDSVQGVNLDEEAAR 996 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI+ + +YN + K+I ++ ++L Sbjct: 997 LIEFQVAYNANAKVIAVAQELFDSILAA 1024 >gi|269796409|ref|YP_003315864.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM 10542] gi|269098594|gb|ACZ23030.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM 10542] Length = 475 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 65/499 (13%), Positives = 148/499 (29%), Gaps = 53/499 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS + + A + Q +N+ N + Y R+ Sbjct: 1 MSTFSGLSTALSSLITQRQALEVAGQNLANINTPGYTRQRVDMQSVSAGQGATMFSQGNQ 60 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V V D + SS+ E A + N + + Sbjct: 61 VGNGVQAVGVARLGDIFMDARVRTTSSSAAYLAARTDAFKRLESTIA-EPGANGISADLD 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 KL S + + D +G +++N+ V ++ +T V + E +S++ Sbjct: 120 KLWASWSDVVNSPTSDAVGAVLLENSAAVQRSISTGYTAVVTQWDQTRSKAESLVSDVNS 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + + ++N+ I+ T S +A++ +DQR+VL +S + G + ++ N V G Sbjct: 180 AAASVALLNEQIQQITVSGGNANELIDQRNVLTTALSSLAGATVRLQPNGTADVNI-GGN 238 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------- 278 + + V + N + ++ + + + G++ +L + Sbjct: 239 PIVSGSSAQKLKLVGSREMVGATGNEVRVEWDRTPAGTPAPLEGGQLAGVLSVLAPASGG 298 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + +A L S + + G+ D Sbjct: 299 AGGMLAEAAESYNVLATKLATSVNTLHSAGADRAGTTGVDFYSLPTDGT----------- 347 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 P + ++ + N N D I S + Sbjct: 348 ---PAALGLRVAITSPSQIAVRNPANGANDTSVADAIGQLGASKDGPDTV---------- 394 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 + + ++ V+ EE ++ +++Y Sbjct: 395 -----WSTFVVSTGVKAKAALQSATVAEAARQTAEGLQLAQTSVDQDEESINMLSFQRAY 449 Query: 459 NISNKLIMFTDKMLQTLLE 477 + +++ D+ML L+ Sbjct: 450 QGAARVMTAVDEMLDQLIN 468 >gi|323976263|gb|EGB71356.1| flagellar hook protein FlgK [Escherichia coli TW10509] Length = 458 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 TQQNQTEVTAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|83716869|ref|YP_438395.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis E264] gi|167614843|ref|ZP_02383478.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis Bt4] gi|257141428|ref|ZP_05589690.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis E264] gi|83650694|gb|ABC34758.1| flagellar hook-associated protein 1, putative [Burkholderia thailandensis E264] Length = 452 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 67/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + A+Q + +N N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN---SPTHYISKLRDSLESYSKNLSE 120 + L + G+ Q++ E + + + + K +LE+ S N + Sbjct: 62 TQQLWQTAGQYGRYDAAQTYFDQLEALFGGNPVDGKTKANDLGFGKFIGALEAASGNPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VID A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS D +DQRD + +S G+ + + N + V ++G L Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGTVDVSMTNGQPLVVGAQAGRIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + + + + G++ L + V+ L +A Sbjct: 242 DA----AGQQTLSLTFGSQTMPLRTGSLGGELLGLAEFEGEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPL----------------ITYDAATGLLGIDPDVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + LI S + I +V+L +G + + Sbjct: 342 DPANPGDNSNLLALIEIGSTSIDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452 >gi|284007169|emb|CBA72453.1| flagellar hook-associated protein FlgK [Arsenophonus nasoniae] Length = 545 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 72/546 (13%), Positives = 179/546 (32%), Gaps = 74/546 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQ 55 MS ++ N A + A ++I NI N+ ++Y R+ T V V Sbjct: 1 MS-SSLMNTAMSGLKVAQTALSTIGSNIANSKVESYHRQTTTLATDGSNNNINGVKVSGI 59 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + E + + + G++++ F + + + +++ SL++ S Sbjct: 60 QREYDEFINAHYNKAVTEQGERKIYAEFALELDKLM--SASDTDLASSMTEFFTSLQTLS 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L VI+ A+ ++ F + ++ + + I + + ++ +N Sbjct: 118 TDAASAPLRTEVINKAQAMISRFKSVEQQFNTMEQRLNGNIGQMADKVSQLAQQVAKLNG 177 Query: 176 AIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + ++ LD+RD L +++S + GIS I +++ + ++G +L + Sbjct: 178 EMTKIKGLQGYVPNEMLDRRDQLTRELSTVAGISVIRQDDTI-NINLANGLSLVNGTKAN 236 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ + ++ G++ L +RD V+ + +++++ Sbjct: 237 KITAISSAADPAQITLAYDDGINPPREIDTRSITGGELAGALAVRDEVLQPNRQKINQLG 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET--------------ICV 340 +L S ++ + + G + K Q + I Sbjct: 297 LILTESINQVQQAGFDLQGNAGQALFQTGKPSIISHNQNQGTSSFATQFTDATQVKGIDY 356 Query: 341 NPQYRSNPSFLRDGGSVS------------------------------------------ 358 + N + + + Sbjct: 357 AMMFDGNNWVVTQQSTGASVNVTSTAATANHGKKLTFDGMEIAPTSAPQAGDKFIIKSVD 416 Query: 359 ---KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----GINTNVTLLEYARNSIGW 410 + N AG + I + +A +N TL + G Sbjct: 417 EVISGLSVAITNPAGIAAASQAGTGQADNTNIKNLLALQDKKLVNGTSTLSKAYTAVAGD 476 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + V+ + + GVNL EE + ++++ Y + K+I + Sbjct: 477 VASKANQAKADFTAQSVITKSYLQKQQSVSGVNLDEEYLEMSRMQEFYMSNAKVIQTANS 536 Query: 471 MLQTLL 476 + +TL+ Sbjct: 537 LFETLM 542 >gi|297618069|ref|YP_003703228.1| flagellar hook-associated protein FlgK [Syntrophothermus lipocalidus DSM 12680] gi|297145906|gb|ADI02663.1| flagellar hook-associated protein FlgK [Syntrophothermus lipocalidus DSM 12680] Length = 618 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 57/439 (12%), Positives = 139/439 (31%), Gaps = 39/439 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S+ + N+ NA+ + Y R+ + + Sbjct: 3 SMFLGLEIGRRAIMTQQTALDVTGHNVANANTEGYSRQVAVMVTTPAYHSPALTQNLSVG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R D + ++ G + LQ+ E + ++ + + Sbjct: 63 QIGTGVKVSEIRRLRDGFVDMQVRDETNTTGYWQALQTALDKIEAV-INEPSDEGLRGVL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + S++ + + + V V F+ ++Q++R D + +++ ++ L Sbjct: 122 DNFWQAWQDLSESPENESVRQVVAQRGMAVADTFHHIYNQLQELREDLNSQVKAKVDELN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +++ +N I+ T + + +D D+RD+LL ++++I+ + + + V Sbjct: 182 SYATQIADLNLQIQAITIAGKEPNDLKDRRDLLLDQLAKIVDAKIVYELDGMVTVMVGGT 241 Query: 225 TTLFETVPRDINFE---------KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + I D + G++ L Sbjct: 242 PLVQGITTMKVGLNADTNGIYKVVWDPDPSGHPGTSITGDPADDPGYTELHLKSGELLGL 301 Query: 276 LQIRD-----------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 L+ R ++VP N+L+ MA+ ++ + + + N Sbjct: 302 LEARGPADHSTLGSERNLVPDLMNRLNLMAKTVVMTTNALHRAGYSLNNTTPYPDGLDFF 361 Query: 325 DLDNKLCQGISE-TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 N+ I V + S+P + + + N N + + Sbjct: 362 KQANEDSITEWAKYIQVADEIVSDPKNIAAALNRTSDDTGNPVNFGDGANALKIAQLKHT 421 Query: 384 KNFIFDPVAGINTNVTLLE 402 N A +VT + Sbjct: 422 LNRNEYWTASDEIDVTFPD 440 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 71/251 (28%), Gaps = 2/251 (0%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + Y ++ + + N+ S + + ++ L Sbjct: 363 QANEDSITEWAKYIQVADEIVSDPKNIAAALNRTSDDTGNPVNFGDGANALKIAQLKHTL 422 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + G+ + Sbjct: 423 NRNEYWTASDEIDVTFPDSTQFQGNFTVRYGGVDYEITMSAPAEPYQDFQEVVNAISGQL 482 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLEYARNSI 408 G +V + D F VA + VT+ +Y R+ + Sbjct: 483 EAMGLNVGVRAEGKRLVFYSSSDQFQGVTGGTFPASGFSNVAARTMIQQVTVDDYWRSQV 542 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++ + +V+ + + T GV+L EE+ +IK + +YN + + I Sbjct: 543 SSVGVISQEATRMVENQEVLLDQLEAKRQATSGVSLDEEMVNMIKFQHAYNAAARYITVI 602 Query: 469 DKMLQTLLEGV 479 D+ + ++ + Sbjct: 603 DEAVDVIVNRM 613 >gi|256020234|ref|ZP_05434099.1| flagellar hook-associated protein FlgK [Shigella sp. D9] gi|300817263|ref|ZP_07097481.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1] gi|332281396|ref|ZP_08393809.1| lateral flagellar hook associated protein 1 [Shigella sp. D9] gi|300530239|gb|EFK51301.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1] gi|332103748|gb|EGJ07094.1| lateral flagellar hook associated protein 1 [Shigella sp. D9] Length = 458 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|146311252|ref|YP_001176326.1| flagellar hook-associated protein FlgK [Enterobacter sp. 638] gi|145318128|gb|ABP60275.1| flagellar hook-associated protein FlgK [Enterobacter sp. 638] Length = 546 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 75/547 (13%), Positives = 166/547 (30%), Gaps = 73/547 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A ++ NI + + Y R+ T+ V V Sbjct: 1 MSSLINSAMSGLSAAQASLNTVSNNISSYNVAGYTRQTTVLGAANSTLTGGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + A + + +D S + + SL+ Sbjct: 61 NGVQREYDAFITNQLRAAQNQSSGLTTRYQQMAKIDDVLSDTT--KSLSTTLQGFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +TV+ A+ +V F + + ++ + I + + + +++ Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKVTDQYLRDQDKQVNTAIATSVDQINSYATQIAT 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ V +G TL + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVDVSVQDGGTYNVSFGNGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + A+ G + L+ R+ + +N L Sbjct: 239 SSVTKLAAMPSNADPARMTVAYVDPAAGNVEIPDKALNTGSLGGLITFRNEDLDKTRNNL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-------------------- 330 ++MA S +++ ++ + G + + Sbjct: 299 NQMALAFADSMNQQHEKGFDANHDAGGKLFSFGTPSVMENGKNTGSATVTATIDDSSKVQ 358 Query: 331 ----------CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + + + P D K + ++ D Sbjct: 359 ATDYKLEYNGSDWTVTRLSDKTTFTATPDASGDMTFDGVKINVSGAAANKDSFVVKPVVD 418 Query: 381 SFNK-----------NFIFDPVAGINTN---------------VTLLEYARNSIGWLEKN 414 + D AG + N Y + Sbjct: 419 TIVNMELLIKDESKLAMASDATAGESDNRNGKALLALQSTKTVGGNKSYNDAYAALVSSV 478 Query: 415 RSDSHDLHMKS---QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + L S V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 GSQTAALKTSSATKTNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTASTL 538 Query: 472 LQTLLEG 478 ++ Sbjct: 539 FDAIINI 545 >gi|324113877|gb|EGC07851.1| flagellar hook protein FlgK [Escherichia fergusonii B253] Length = 548 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 70/549 (12%), Positives = 161/549 (29%), Gaps = 75/549 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + + + N+ + + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++++G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + G + +L R + +N L Sbjct: 239 SSARQLAAVPSHADPFRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+++ ++ G K L Q S+ + Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358 Query: 351 LRDGGSV-SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 D W V LA + N F + T + + Sbjct: 359 ATDYTITWQGAGKWQVTRLASNTSFTIEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418 Query: 410 WL---------------------------------------EKNRSDSHDLHMKSQVVFN 430 K + + + + Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478 Query: 431 HI---------------------SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + GVNL EE L + +Q Y + +++ + Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538 Query: 470 KMLQTLLEG 478 + L+ Sbjct: 539 TLFDALINI 547 >gi|306813297|ref|ZP_07447490.1| flagellar hook-associated protein FlgK [Escherichia coli NC101] gi|305854060|gb|EFM54499.1| flagellar hook-associated protein FlgK [Escherichia coli NC101] Length = 458 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQEYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|114706627|ref|ZP_01439528.1| flagellar hook-associated protein K [Fulvimarina pelagi HTCC2506] gi|114538019|gb|EAU41142.1| flagellar hook-associated protein K [Fulvimarina pelagi HTCC2506] Length = 469 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 128/488 (26%), Positives = 221/488 (45%), Gaps = 30/488 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59 MSLL+VFN A++ + SQQ A + RN+ NAD+ R+ + V + + Sbjct: 1 MSLLSVFNNARSSLSVTSQQSALVARNVANADDPTATRKYASQVSERLGAVDIRAISQSS 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + L + +++G L + D + SP+ I+ L+D+L + + Sbjct: 61 DPALYRSLISAQASLGTNETLAEALDRVRDVIGDVDASTSPSASIAALKDALTDLAASPE 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +T +D A + N N + VQ +RADAD+E++ L LS+L +N + Sbjct: 121 NSQLQRTAVDAARSLATNLNNATMSVQTMRADADRELDEGAKRLNELLSQLETLNSKVVA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 TA+ D D +DQRD ++ +IS +G+S +R NND+V+ T G +FET R + F + Sbjct: 181 GTATGADVTDEVDQRDRIVSEISSYVGVSVRLRANNDLVLSTDSGIVMFETRARSVEFTR 240 Query: 240 MNSYTVTSESNPIF---------IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S+ + + IDGV + AV G + A L++RD V FQN+L Sbjct: 241 TQSFDPSIRLDSAVAANRPGEFKIDGVSIGGTSSMAVRDGSLVAALKLRDEVGVEFQNRL 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D+ L+ ++ G E I+ V+ + NP+ Sbjct: 301 DQTGDTLVNETFAENGAPGLYE---------------RTGPATIAIAASVDYRIGGNPAL 345 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 +RD G ++ +N +G+ D +N F+ F TL ++ +S+ W Sbjct: 346 IRD-GGINGSPTFNTAGESGFADRLNALVARFSDQHTFANGEL----GTLGDFTASSMAW 400 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 E R+ + ++ ++ SN G+NL +E+S L+++E++Y S KL+ + Sbjct: 401 FEGRRATASKDASYQSIMVTRARDTLSNKTGINLDDEMSHLLELERTYQASTKLVQTVGE 460 Query: 471 MLQTLLEG 478 +L LL Sbjct: 461 LLDRLLAI 468 >gi|281412143|ref|YP_003346222.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila RKU-10] gi|281373246|gb|ADA66808.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila RKU-10] Length = 858 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + N A + + NI NA Y R+ + Sbjct: 4 MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V T D ++ + S E + A + + Sbjct: 64 LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + + S V+ A+++V ++++R D D EI +S + Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + L +N+ I+ +D LD+RD +L ++S + I+ + + + + Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + R++ + + +F+ + GK+KAL+ +RDS + Sbjct: 243 QIVLNGSTYREL---RALERPYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +LDE + S + S V + + + Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + S+ + + + ++ + + I V Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429 S+ + + S Sbjct: 412 LGTSL-KVGTHAGGYRLYLEDSTGSL 436 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 62/436 (14%), Positives = 120/436 (27%), Gaps = 35/436 (8%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + S + D ES LS + V E+ Sbjct: 427 LYLEDSTGSLRNRLFLSLGDSLSQMGFDTETKGYITIKESDLSGLSSGVYNINVEYTLED 486 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + T + ++ ++ E + + D Sbjct: 487 GTRQTETISVDLSSGVNLSNIEAS-----INSSSHLRAQIYADPSTGENMLVIVPDEQLS 541 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 D K+ T TL F+ +T+T S I Sbjct: 542 FDPSAVKVLSDDDFFTKSNAFVRNYEVLEYKDTLENIFYGQTGFDPTRPFTITINSTDIE 601 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEM--ARVLIGSFS 302 ID V + K +L R S + F ++ E+ + + Sbjct: 602 IDPAVDTLETLVEKINEKNTGVLADLTPHHSLVFRASSLYDFDLRMMEIKGPQGFFEAVG 661 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLC---QGISETICVNPQYRSNPSFLRDGGSVSK 359 DP + K D +++ + + P + + VS Sbjct: 662 FVDPDGDPNTFDWSSSFTLVSKSDDFTTLSERFKVADILTFDRAPYDEPLNIVNQFEVSS 721 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEY 403 N NLA D + A N + E+ Sbjct: 722 SLAANPANLAVDVGYALENSDWNATSIKPSGGANPELLETIQNLYTRKILSNGKESFYEF 781 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + L + +L ++++ I + GV+L EE++ +IK + +++ + K Sbjct: 782 FGGVVSELGVEAETASNLKNNTEILRQEIDNAREEVKGVSLDEEMANMIKYQHAFSAAAK 841 Query: 464 LIMFTDKMLQTLLEGV 479 +I D+M+QT++ V Sbjct: 842 VITAVDQMIQTVINMV 857 >gi|300936133|ref|ZP_07151072.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1] gi|300458711|gb|EFK22204.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1] Length = 458 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|307313513|ref|ZP_07593134.1| flagellar hook-associated protein FlgK [Escherichia coli W] gi|306906681|gb|EFN37192.1| flagellar hook-associated protein FlgK [Escherichia coli W] gi|315059548|gb|ADT73875.1| flagellar hook-filament junction protein 1 [Escherichia coli W] gi|323181553|gb|EFZ66973.1| flagellar hook-associated protein FlgK [Escherichia coli 1357] gi|323379893|gb|ADX52161.1| flagellar hook-associated protein FlgK [Escherichia coli KO11] Length = 458 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|310816851|ref|YP_003964815.1| flagellar hook-associated protein [Ketogulonicigenium vulgare Y25] gi|308755586|gb|ADO43515.1| flagellar hook-associated protein [Ketogulonicigenium vulgare Y25] Length = 468 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 172/491 (35%), Gaps = 36/491 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL A + S+Q I NI NA + Y RR+ + S VTV Sbjct: 1 MSLTYSLGNALSGLAAVSRQTEVISSNISNALTEGYARREVALSASSIGGRGAGVTVDGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 A + + L A E+ S I L +L + + Sbjct: 61 TRAVNAAITADRRAAQTHMSGALALSDGLARLEVAMGSAADAGSIAGRIGALEQALVAAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 S D + + VV N SA +VQ++R DAD +I +I L L+++ +N Sbjct: 121 AEPSSDAGLQAAQQALQAVVSTLNASAAKVQQMRVDADADIATQIKALNTSLTQIAALNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + DA +DQR +L+ +++ ++ ++ + R+N + + G L + Sbjct: 181 QISRALTTGADAAGLMDQRAILIDQVASLVPLTEVPRDNGAVALMAPGGVMLVDNSAATF 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +F ++ T + GV+V + G + A +RD+V+ Q+ Sbjct: 241 SFTHSHTITADMTLENGLLSGVLVDGRPLDASGGMGKLAGGTLGAAFALRDTVLTAAQSG 300 Query: 290 LDEMARVLI--GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 LDE+A L S DP + L + ++P + Sbjct: 301 LDEIAADLALKFQDSANDPSIAGGLGLFTDSGGLVDPSDATGLSARLRLNTLIDPAQGGS 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 LRDG + + L + + A Sbjct: 361 AQLLRDGLYGGGTAVGSAVQLNRWSSALGQSSA----------------------LAAGV 398 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + R S +FN + GV+ E+ L+ +E SY + K++ Sbjct: 399 LNDIAAARVSSDREASYQSALFNSLYS-AEAAQGVDTDREMQKLLLIETSYAANAKVLQA 457 Query: 468 TDKMLQTLLEG 478 D MLQTLLE Sbjct: 458 VDGMLQTLLEI 468 >gi|218549190|ref|YP_002382981.1| flagellar hook-associated protein FlgK [Escherichia fergusonii ATCC 35469] gi|218356731|emb|CAQ89359.1| flagellar hook-filament junction protein 1 [Escherichia fergusonii ATCC 35469] Length = 548 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 69/549 (12%), Positives = 161/549 (29%), Gaps = 75/549 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + + + + N+ + + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++++G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + G + +L R + +N L Sbjct: 239 SSARQLAAVPSHADPSRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+++ ++ G K L Q S+ + Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358 Query: 351 LRDGGSV-SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 D W V L + N F + T + + Sbjct: 359 ATDYTITWQGAGKWQVTRLVSNTSFTVEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418 Query: 410 WL---------------------------------------EKNRSDSHDLHMKSQVVFN 430 K + + + + Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478 Query: 431 HI---------------------SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + GVNL EE L + +Q Y + +++ + Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538 Query: 470 KMLQTLLEG 478 + L+ Sbjct: 539 TLFDALINI 547 >gi|323976545|gb|EGB71633.1| flagellar hook protein FlgK [Escherichia coli TW10509] Length = 547 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 61/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------------ 278 +S + + + G + +L Sbjct: 239 STARQLAAIPSSADPSRTTVAYVDGTAGNLEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 279 ------------------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 D+ ++ ++ + + +A + + Sbjct: 299 GQLALAFAEAFNAQHNKGYDANGKEGEDFFAIGKPAVLQNTNNNGSVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|254445805|ref|ZP_05059281.1| flagellar hook-associated protein FlgK [Verrucomicrobiae bacterium DG1235] gi|198260113|gb|EDY84421.1| flagellar hook-associated protein FlgK [Verrucomicrobiae bacterium DG1235] Length = 486 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 79/508 (15%), Positives = 173/508 (34%), Gaps = 56/508 (11%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SP 47 MS + A + + N+ N +N +Y R+ + Sbjct: 1 MSSSNIFGDLANATKALSAHRFGVTTAGNNLANVNNPDYARQRVLIGEEGMIQTIAGPQG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSS-----------------AIGQQRLLQSFEALKEMM 90 V VV + + D+ + +S ++GQ+ + Sbjct: 61 MGVEVVGFQHMRDAVLDREVLRETSLNASLTAQQAALGKAESSLGQEINRSGDSPFIDGA 120 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 +AD + ++ ++ S S N D ++++ AE + + N ++ +R Sbjct: 121 TADGGGSGGIAETLNNFFNAFHSLSANPGSDAEKESLLQKAEILTEKLNVTSERFSDLRE 180 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGIST 209 E+E ++ + + + E+ +N I +S A DQR +L+ +SEI+ I T Sbjct: 181 ALTLEVETDLDSANQMIEEIATLNAEIARAESSHAGQALSLRDQRQAVLRDLSEIMQIKT 240 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 +++ + T+ P+ + TV + + + V V Sbjct: 241 ENIDDSAGQIRVYI-PTIGGDSPQLDLVSRGRFQTVDLDDSGVNPVFTVGEDAIQIDVRG 299 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G + L+ RD + +Q LD++A+ L+ + + + Sbjct: 300 GSVHGALKSRDGAIAEYQRGLDDLAKELVTQVNGLYNSGVSPNDTNFF------------ 347 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 ++ + L + S N G L + + N Sbjct: 348 ------SDTSDPSEFTAAGITLASDLTASTLRTSNASTDLGDNSLTLAIAELDDTNQAAL 401 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 N + R+ + L +N + +VF + + GV++ EE++ Sbjct: 402 ------GNRNFGTFYRSIVTDLGENVAAVDSRLEDENIVFELLKQQQDAVSGVSIDEEMT 455 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++K ++++ + KLI D+ML ++ Sbjct: 456 DMMKFQRAFQATGKLIQTIDEMLDVIVN 483 >gi|218703531|ref|YP_002411050.1| lateral flagellar hook associated FlgK-like protein [Escherichia coli UMN026] gi|293403361|ref|ZP_06647452.1| predicted protein [Escherichia coli FVEC1412] gi|298378972|ref|ZP_06988853.1| flagellar hook-associated protein 1 FlgK [Escherichia coli FVEC1302] gi|300899458|ref|ZP_07117706.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1] gi|218430628|emb|CAR11494.1| Lateral flagellar hook associated protein 1 (FlgK-like) [Escherichia coli UMN026] gi|291429214|gb|EFF02234.1| predicted protein [Escherichia coli FVEC1412] gi|298280085|gb|EFI21589.1| flagellar hook-associated protein 1 FlgK [Escherichia coli FVEC1302] gi|300356937|gb|EFJ72807.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1] Length = 458 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N N Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANTMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|331666552|ref|ZP_08367426.1| flagellar hook-associated protein FlgK [Escherichia coli TA271] gi|331065776|gb|EGI37660.1| flagellar hook-associated protein FlgK [Escherichia coli TA271] Length = 458 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + V + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYVDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|315186992|gb|EFU20749.1| flagellar hook-associated protein FlgK [Spirochaeta thermophila DSM 6578] Length = 624 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 62/425 (14%), Positives = 148/425 (34%), Gaps = 29/425 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + +Q A++ N+ NA + Y R+ Sbjct: 3 STFMSIEIGKRGLLAHTQGLATVGHNMSNASVEGYSRQRVNFEAMDPLYMPGLNREETPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V++ + + + + A ++ G S+ + E ++ + S + Sbjct: 63 QIGQGVSIQSIERIRDEILEGRIAAQTNVGGYWETRNSYLLMVEKTY-NEPSDVSVRSLL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 D+ + S + E VI+NA+ +V + + IR ++++++ ++ + Sbjct: 122 DAFWDAWQELSIHPDEVAARHAVIENAKALVDGIHGRYHALSSIRKMIEEDVQVTVNEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +++ + +N+ I A + +D +D+RD+L++K++++I I+ R+ ++ ++ Sbjct: 182 DYIARIAHLNEQIVKVKAMGDNPNDLMDRRDLLVEKLAKLINITVDKRDPDEFTIHVGGR 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + V + N F + S + + GK+ ALL++RD V Sbjct: 242 HLVQGKVYHPFILDP-------RPQNEGFSAVLWEGSTEEVRLEGGKLAALLELRDGDVR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +LD M L+ +E A G+ + N + Sbjct: 295 GEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDGEFDST 354 Query: 345 R----SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + L V + + + G + + D+ +G + + Sbjct: 355 YLFRIHGTNVLDPNAQVGIEGVITLSGTEGDVQIAYYPTDTVQDIVNRINTSGAEVSASF 414 Query: 401 LEYAR 405 R Sbjct: 415 DRLGR 419 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 96/343 (27%), Gaps = 15/343 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197 +V+ D ++ + +N + + +A D+ Sbjct: 290 DGDVRGEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + + I + + V TL T D+ + TV N I G Sbjct: 350 EFDSTYLFRIHGTNVLDPNAQVGIEGVITLSGTEG-DVQIAYYPTDTVQDIVNRINTSGA 408 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 VS++ L ++ P + + + G Sbjct: 409 EVSASFDR---------LGRLVLKATPSGDVAFPDFVIRHVEDSGQFLSGYAGILGGSGP 459 Query: 318 FIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 A + +D L V P + S L + G P Sbjct: 460 ENAYDWETVDAVLTLRGGAEYGVAPFAHPSGWVVLNPEVERDPASVAAGFGQGGRPAPPG 519 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + I +T +Y ++ + + +++ + + Sbjct: 520 DGSAALAIANLRTEPVMIGRLMTFDDYFAEAVSEIGLKGQQAQIADETQKLIMKDLKDLR 579 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN+ EEL+ +IK + Y S + I + ML L+ + Sbjct: 580 ESISGVNIDEELAQMIKFQHGYAASARFISTFNSMLDLLINRM 622 >gi|148980296|ref|ZP_01815983.1| putative flagellar hook-associated protein [Vibrionales bacterium SWAT-3] gi|145961315|gb|EDK26625.1| putative flagellar hook-associated protein [Vibrionales bacterium SWAT-3] Length = 459 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 65/489 (13%), Positives = 146/489 (29%), Gaps = 42/489 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 M + N + + +N N + Y R+ S Sbjct: 1 MGMT---NIGLSGALANRVALNTTAQNTANVNTPGYSRQIVTMEASLSGNAVNGINLGAG 57 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V L + + + + + E + S T ++ Sbjct: 58 VEVSDILRIADQSSINRLREATESAQYSQSYFNGLSNLENLLG--ADGLSLTQGMNGFFA 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +++ S + V+ NA+ + Q FN+ + ++ + A + ++++ L Sbjct: 116 AIDEASVTPESVAFRQQVLTNADALAQQFNSVSAQLSQQEAAQSERYGALVTHVNSQLES 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N ++ D D L ++S+ + + I +N + + T + L Sbjct: 176 IASLNQKLQEDALLGKSVGGLQDAMDKHLNELSKSLDVQVIY-SNGGVELSTPNVQPLVI 234 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++S S I + + G++ AL ++ + + Sbjct: 235 GGYAASLARDLSSGDPYSTDLNITFQSMTTPVDAS---LGGELGALEALKTNQYEPIKTL 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A+ L + + V G + + + + S+ + Sbjct: 292 LADLAKGLADGVNSALNSGFDLNGVAGQNLFTYTLGSEALSLAIDPSLTAQDLAFSSSAT 351 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 AG D++ VAG T +G Sbjct: 352 L------------------AGNGDVLKDLSMLSQTPLTNGSVAG----ETPYSAYSGLLG 389 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + +QV + + VN EE + ++ +Y + K+I + Sbjct: 390 DIGIFTRQAQSEATAAQVSMEDAQVARDSVSAVNSDEEAANMLLYLNAYEANMKIISTAN 449 Query: 470 KMLQTLLEG 478 +M QTLL Sbjct: 450 QMFQTLLRA 458 >gi|312115279|ref|YP_004012875.1| flagellar hook-associated protein FlgK [Rhodomicrobium vannielii ATCC 17100] gi|311220408|gb|ADP71776.1| flagellar hook-associated protein FlgK [Rhodomicrobium vannielii ATCC 17100] Length = 489 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 145/489 (29%), Positives = 232/489 (47%), Gaps = 10/489 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL A + A + AS Q A + RN+ N + R+ +VV+ + Sbjct: 1 MSLTAALDTATAGISVASSQIAVLSRNVANQSTEGASRKLANVATINGLPSVVSITRVSN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDSLESYSKNL 118 K L A ++ + + A + SPT IS L D L +Y+ + Sbjct: 61 AAALKSLLAANADDARDGAVSDALARLQSTVGATSTDDTTSPTALISALSDDLSTYAASP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + A ++ N ++ VQ++RADAD I +S + L++ VN+ I Sbjct: 121 ESTAAASAAVQAASDLSDALNAASDVVQQVRADADSAISDSVSTINDLLAQFQTVNETIV 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + D D LDQRD +LQ +S IGIST+ R+NNDM +YT G TLF+ R ++FE Sbjct: 181 KGTVTGADTTDALDQRDAILQSLSAEIGISTVTRSNNDMAIYTDSGVTLFDKAARSVSFE 240 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSA-VPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N++ +++ N +++DGV V+++ S + GK+ L+++RD + +Q+QLDE+AR L Sbjct: 241 ATNAFAASTQGNAVYVDGVPVTASGASYEIKSGKLAGLVEVRDDLAVTYQDQLDEIARGL 300 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I +F E D A + + D + +G++ I + + P+ LRDG Sbjct: 301 ITAFQETDQSASGTGSAQAGLFTDSGSLVVPTSGTVSEGLAARISLASSVIATPTLLRDG 360 Query: 355 GSVSKKFL----WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G + +GY D ++ DS + FD AG T+++L +YA S W Sbjct: 361 GISTNGAAPYVYNPSPGQSGYTDRLDGLVDSLSSKMTFDTSAGAGTSISLSDYAAASASW 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L + S V + + + SN GVNL ELS ++ +EQSY S KL+ D+ Sbjct: 421 LGVKSQSASSTAAYSATVKSTAATALSNATGVNLDSELSKMLALEQSYAASAKLVSAVDQ 480 Query: 471 MLQTLLEGV 479 M LL + Sbjct: 481 MFSDLLNAI 489 >gi|323191378|gb|EFZ76640.1| flagellar hook-associated protein FlgK [Escherichia coli RN587/1] Length = 458 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNANGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|77165832|ref|YP_344357.1| hypothetical protein Noc_2369 [Nitrosococcus oceani ATCC 19707] gi|254433787|ref|ZP_05047295.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27] gi|76884146|gb|ABA58827.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090120|gb|EDZ67391.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27] Length = 647 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 60/421 (14%), Positives = 135/421 (32%), Gaps = 17/421 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M+ + + A + A+ NI N + + R+ T V Sbjct: 1 MASSDLLGIGASGLLAAQRALATTSHNIANVNTPGFSRQRTELAARLPEFTGQGFIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T R + + +S Q ++ A + + AD + + + ++ Sbjct: 61 DVTTVRRAYDSFLTEQARYSTSEYAQSKVFHDLAAQVDNLFAD--SDTGLSASSQRFFNA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + S + ++ ++ + ++ D + + ++ + S + Sbjct: 119 TQELANDPSSSAARQVLLAEGGAFAARVHSLGDRLGELDEDVNTRLRDTVAEVNTLSSSI 178 Query: 171 TVVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N I+ + +D LDQRD L+Q +S+ ++ + +++ + V+ G +L Sbjct: 179 AGLNQQIRDLRGQNNNQPPNDLLDQRDQLIQDLSQKAAVTVLPQDDGSLNVFIGKGQSLV 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 N Y + G V + ++ G++ ALL RD V+ +N Sbjct: 239 TGDHSHSLTTLANPYEASRLEVGYAAKGGVAPISD--SIQGGELGALLSFRDEVLSSSRN 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L ++A + SF+E+ + + + G I T + N Sbjct: 297 ALGQLAVGVAQSFNEQHRLGVDLQGELGGDFFAAIDSNTAVSLPRADNTGDGVIEIAIND 356 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLIN-HYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + L D D + T+ ++ Sbjct: 357 ASKLTDSDYRLDRNGAGFTLTRLSDNQAFSLSTFPGSAETVDGLTLNLTSGSINGGDSYL 416 Query: 408 I 408 I Sbjct: 417 I 417 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/390 (13%), Positives = 102/390 (26%), Gaps = 11/390 (2%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 ++S S + S + LG+ + A+ + ++ Sbjct: 266 GGVAPISDSIQGGELGALLSFRDEVLSSSRNALGQLAVGVAQSFNEQHRLGVDLQGELGG 325 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D I+ + I ASK D+ R+ ++ + Sbjct: 326 DFFAAIDSNTAVSLPRADNTGDGVIEIAINDASKLTDSDYRLDRNGAGFTLTRLSDNQAF 385 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T DG TL T + + + + + ++ G Sbjct: 386 SLSTFPGSAETVDGLTLNLTSGSINGGDSYLIQPTRAAAQQFGV----MLTDSARIAAAG 441 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 I+ + + L + + + ++ LD Sbjct: 442 PIRTEANLGNRGTGQVSAAAVTATAGLPLPSNGEVTLTYDAAARQFNVSGGPGGTLDFDP 501 Query: 331 CQGISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + P N + L N G K D Sbjct: 502 ATESNGKEFHLPSVGGLNFTVSGVPADGDTFMLQNNTGGVGDNRNALSLAGLQTKPVFQD 561 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T E + + + + + + + GVNL+EE + Sbjct: 562 ------GTTTYQEQYGRLVADVGARTRQAEANQDTHKTLLDQAVAAREGVSGVNLEEEAA 615 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LI+ +Q++ + ++I D M QTLL V Sbjct: 616 NLIRFQQAFQAAARVISTADTMFQTLLGAV 645 >gi|170288661|ref|YP_001738899.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2] gi|170176164|gb|ACB09216.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2] Length = 858 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + N A + + NI NA Y R+ + Sbjct: 4 MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V T D ++ + S E + A + + Sbjct: 64 LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + + S V+ A+++V ++++R D D EI +S + Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + L +N+ I+ +D LD+RD +L ++S + I+ + + + + Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + R++ + + +F+ + GK+KAL+ +RDS + Sbjct: 243 QIVLNGSTYRELRALER---PYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +LDE + S + S V + + + Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + S+ + + + ++ + + I V Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429 S+ + + S Sbjct: 412 LGTSL-RVGSHAGGYRLYLEDSTGSL 436 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 65/467 (13%), Positives = 128/467 (27%), Gaps = 38/467 (8%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTH 102 T+ + + + + L S +L+ + D Sbjct: 396 VSAGTTIGDLVGSWNLLGTSLRVGSHAGGYRLYLEDSTGSLRNKLFLSLGDSLSQMGFDT 455 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 ES LS + V E+ + T + ++ ++ E Sbjct: 456 ETKGYITIKESDLSGLSSGVYNINVEYTLEDGTRQTETISVDLSSGVNLSNIEAS----- 510 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + D D K+ T Sbjct: 511 INSSSHLRAQIYADPSTGENMLVIVPDEQLSFDPSAVKVLSDDDFFTKSNAFVRNYEVLE 570 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ----- 277 TL F+ +T+T S I ID V + K +L Sbjct: 571 YKDTLENIFYGQTGFDPTRPFTITINSTDIEIDPAVDTLETLVEKINEKNTGVLADLTPH 630 Query: 278 ----IRDSVVPIFQNQLDEM--ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 R S + F ++ E+ + + DP + K D Sbjct: 631 HSLVFRASSLYDFDLRMMEIKGPQGFFEAVGFIDPDGDPTTFDWSSSFTLVSKSDDFTTL 690 Query: 332 ---QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 +++ + + P + + VS N NLA D + Sbjct: 691 SERFKVADILTFDRALYDEPLNIVNQFEVSSSLATNPANLAVDVGYALENSDWNATSIKP 750 Query: 389 DPVAG----------------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 A N + E+ I L + +L ++++ I Sbjct: 751 SGGANPELLETIQNLYTKKMLSNGKESFYEFFGGVISELGVEAETASNLKNNTEILRQEI 810 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GV+L EE++ +I+ + +++ + K+I D+M+QT++ V Sbjct: 811 DNAREEVKGVSLDEEMANMIEYQHAFSAAAKVITAVDQMIQTVINMV 857 >gi|301645421|ref|ZP_07245362.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1] gi|307136864|ref|ZP_07496220.1| flagellar hook-associated protein FlgK [Escherichia coli H736] gi|331640719|ref|ZP_08341866.1| flagellar hook-associated protein FlgK [Escherichia coli H736] gi|301076305|gb|EFK91111.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1] gi|315616821|gb|EFU97438.1| flagellar hook-associated protein FlgK [Escherichia coli 3431] gi|331040093|gb|EGI12301.1| flagellar hook-associated protein FlgK [Escherichia coli H736] Length = 458 Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 67/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMITGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + V + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYVDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMEVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ P +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|222084886|ref|YP_002543415.1| flagellar hook-associated protein [Agrobacterium radiobacter K84] gi|221722334|gb|ACM25490.1| flagellar hook-associated protein [Agrobacterium radiobacter K84] Length = 491 Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 159/489 (32%), Positives = 260/489 (53%), Gaps = 11/489 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N AQ I NN+ Q + + NI NA N +Y RR M T VV N+ Sbjct: 1 MSLTTALNNAQAIFNNSGTQSSVVSNNIANAGNTDYSRRQAMLTTDMSGAQVVKIARANE 60 Query: 61 NMFDKV-LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 K L + SS QQ LL+++ +L+ + +P Y+S L+ ++++Y+ + S Sbjct: 61 PALQKTFLSSTSSDAAQQSLLKAYTSLQSATLGGNDNEVAPATYLSNLQTAMQTYASSPS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 ++ ++ A+ + N + VQ +R DADK+I ++ L L++ NDA+K Sbjct: 121 SSTAAQSAVNAAQSLATALNNATTAVQSVRTDADKQIASDVDTLNGLLNQFQTANDAVKS 180 Query: 180 KTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 TA+ D LDQRD +L++IS+I+G++T+ R+NND+ +YT+ G TLFET+PR + Sbjct: 181 ATAASSPTSTTLSDALDQRDSILKQISQIVGVTTVTRDNNDVALYTTGGATLFETIPRSV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMA 294 F SYT + N ++IDGV +++ QG++ +G ++A LQ+RD V P +Q QLDE+A Sbjct: 241 TFTPTTSYTASISGNNVYIDGVALTAGQGASTTAQGSLQASLQVRDDVAPTYQKQLDEIA 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-----PQYRSNPS 349 R L+ +F+E + + + + D + +P+ Sbjct: 301 RGLVTTFAETNQTDSTTAPGLFTWSGGTVPDSATVVTGMAGSIAVNPALLTTSTQTGDPT 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 LRDGG ++ N +GY D ++ Y + FDP AG + + +L++YA +SIG Sbjct: 361 LLRDGGINGSDYVVNTTGASGYSDQLDAYITGMSTKMDFDPTAGSDASASLMDYASSSIG 420 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 WLE RS + + + S +YSN GVNL EEL+ ++ +EQSY K++ + Sbjct: 421 WLEGQRSTATTAAENTSAALSRSSTAYSNETGVNLDEELTLMMDIEQSYKAGTKILNAVN 480 Query: 470 KMLQTLLEG 478 +MLQ++L+ Sbjct: 481 EMLQSVLDI 489 >gi|293408373|ref|ZP_06652212.1| flagellar hook-associated protein FlgK [Escherichia coli B354] gi|291471551|gb|EFF14034.1| flagellar hook-associated protein FlgK [Escherichia coli B354] Length = 458 Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 SQFADAVNNQQAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|296103605|ref|YP_003613751.1| flagellar hook-associated protein 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058064|gb|ADF62802.1| flagellar hook-associated protein 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 545 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 76/546 (13%), Positives = 155/546 (28%), Gaps = 72/546 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + +FN A+ + A N+ N + Y RR + Sbjct: 1 MNNLFNLARGGLSVAQAALRVTGDNLTNGMSGTYSRRSLIIGELGGMTTGQGFFGYGARA 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L S L E L ++ + +++ + ++ + ++ Sbjct: 61 GGVERAYDAFANNELR--GSLSHYASLNGRMEQLSDIDNMLADESDNVSVSLNDMFKAMA 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + ++ V + + FN SA+ + + + +IE ++ + +L Sbjct: 119 TLSGDAADGPARAAVFNALGTLANRFNASAKRLTALEKSTNTQIEQSAKDINSYTQQLAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETV 231 VN ++ + D LDQRD LL+K+SE IGI+ + V SDG L Sbjct: 179 VNKQLERAQGNGAPPADLLDQRDALLEKMSEHIGITVTEDKTTGRVDVLLSDGRPLVSRD 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + S S++ KG++ L + R+ + I + +LD Sbjct: 239 RAYKLQTSPSDADPNKTIVSYVDANENASPLDESSITKGRLGGLFKFRNEDLTIARQELD 298 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIAD-----------------------GIKDLDN 328 ++A + +E+ + G + Sbjct: 299 QIAFTMANRMNEQHAEGYTPDGDKGGDLFSLADIKAYANAKNTGTGKLGAINVTNYTDVK 358 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN------------ 376 ++ V ++ + + Sbjct: 359 SENYTVTSDGAGGWTVTGEDGRTVPATLVGDNLTFDGIEIDVSGGGFDDGDSFTLNPIAG 418 Query: 377 -------HYCDSFNKNFIFDPVAGINTNVTLL-----------------EYARNSIGWLE 412 + D G N L E + +G + Sbjct: 419 AAEGMARSLGSAQEFAAAGDKDGGPGDNTNLEEMLKIQDQKLIGDNTLTEAYASLVGTIG 478 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + ++ ++ GVN+ EE L +Q YN + +L+ M Sbjct: 479 DRARGVKSALVSAETDLRTKYDTKQALSGVNMDEEYINLDMFKQYYNANAQLLKTATDMF 538 Query: 473 QTLLEG 478 LL Sbjct: 539 DALLSI 544 >gi|148269976|ref|YP_001244436.1| flagellar hook-associated protein FlgK [Thermotoga petrophila RKU-1] gi|147735520|gb|ABQ46860.1| flagellar hook-associated protein FlgK [Thermotoga petrophila RKU-1] Length = 858 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + N A + + NI NA Y R+ + Sbjct: 4 MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V T D ++ + S E + A + + Sbjct: 64 LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGVRSL 122 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + + S V+ A+++V ++++R D D EI +S + Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + L +N+ I+ +D LD+RD +L ++S + I+ + + + + Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + R++ + + +F+ + GK+KAL+ +RDS + Sbjct: 243 QIVLNGSTYREL---RALERPYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +LDE + S + S V + + + Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + S+ + + + ++ + + I V Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429 S+ + + S Sbjct: 412 LGTSL-RVGSHAGGYRLYLEDSTGSL 436 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 65/467 (13%), Positives = 128/467 (27%), Gaps = 38/467 (8%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTH 102 T+ + + + + L S +L+ + D Sbjct: 396 VSAGTTIGDLVGSWNLLGTSLRVGSHAGGYRLYLEDSTGSLRNKLFLSLGDSLSQMGFDT 455 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 ES LS + V E+ + T + ++ ++ E Sbjct: 456 ETKGYITIKESDLSGLSSGVYNINVEYTLEDGTRQTETISVDLSSGVNLSNIEAS----- 510 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + D D K+ T Sbjct: 511 INSSSHLRAQIYADPSTGENMLVIVPDEQLNFDPSAVKVLSDDDFFTESNAFVRNYEVLK 570 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ----- 277 TL F+ +T+T S I ID V + K +L Sbjct: 571 YKDTLENIFYGQTGFDPTRPFTITINSTDIEIDPAVDTLETLVEKINEKNTGVLADLTPH 630 Query: 278 ----IRDSVVPIFQNQLDEM--ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 R S + F ++ E+ + + DP + K D Sbjct: 631 HSLVFRASSLYDFDLRMMEIKGPQGFFEAVGFVDPDGDPNTFDWSSSFTLVSKSDDFTTL 690 Query: 332 ---QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 +++ + + P + + VS N NLA D + Sbjct: 691 SERFKVADILTFDRAPYDEPLNIVNQFEVSSSLAANPANLAVDVGYALENSDWNATSIKP 750 Query: 389 DPVAG----------------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 A N + E+ + L + +L ++++ I Sbjct: 751 SGGANPELLETIQNLYTRKILSNGKESFYEFFGGVVSELGVEAETASNLKNNTEILRQEI 810 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GV+L EE++ +IK + +++ + K+I D+M+QT++ V Sbjct: 811 DNAREEVKGVSLDEEMANMIKYQHAFSAAAKVITAVDQMIQTVINMV 857 >gi|161594054|ref|NP_901379.2| flagellar hook-associated protein FlgK [Chromobacterium violaceum ATCC 12472] Length = 455 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 68/483 (14%), Positives = 152/483 (31%), Gaps = 41/483 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56 N A + A + +NI N Y R+ + + V V R Sbjct: 4 INNALSGAQAAQVALNTASQNIANQQTPGYSRQGVVLATQAPGAGDPLSAGYGVNVSNVR 63 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + +S +G + Q + E + +S + + +L + S Sbjct: 64 RFSDDYKNLLQWQAASNVGSRAAAQPYFTQLEKVMG--SKGSSLSDGFDQFFAALNAASL 121 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + VI +A+ + Q FN + A ++ ++ + + L +N+ Sbjct: 122 D--SNTMRDQVIRSADALAQRFNNLDGVLTSQLAAISEQRNATLTQINSATANLAALNEK 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A + D+RD + +S +I + + + + + +G L Sbjct: 180 LMSAKAQGINTSGLEDERDRQVDALSSLIEVRVVAQPDGSKSISLKNGLPLVTGDSAATL 239 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G++ L + + Q Q+ +A Sbjct: 240 SSEAQPDGSQQ----LKLAFGTEKYAMPGGDLGGQLGGLNRFETENLRPVQAQVRTLAGE 295 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L +++ + PG + L Sbjct: 296 LATRVNDQLAKGYDMNGQPGKPLFQYD---------------------AGAAHGLLQTTG 334 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + L + A + N K F NVTL + IG L + Sbjct: 335 ILSAELGFSADPAKPGNNDNLREVLKVKQQAFPLAG--IGNVTLGDAYSQMIGHLAISSQ 392 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + V+ +++ +T GV EE LI+ ++ Y + K+I +++ ++ L Sbjct: 393 QNSSSLDTANVIRAEAEKNWQSTSGVQRDEEAVSLIEYQKMYQANMKVIAVANQLFESTL 452 Query: 477 EGV 479 + Sbjct: 453 AIL 455 >gi|116248739|ref|YP_764580.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. viciae 3841] gi|115253389|emb|CAK11777.1| putative flagellar hook-associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 486 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 159/485 (32%), Positives = 255/485 (52%), Gaps = 8/485 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I N QQ + I NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNNVQSIFNTTGQQSSVISTNIANVGNSDYVRREASVTTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y++ + +L+++ + S Sbjct: 61 TALLAQYLQTNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLTAFQQALQTFGTSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A+++ + NT++ VQ IRA+AD EI ++S L LS+ N+A+K Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T++ D LD+R+ LL++IS I+G+++ VR+NNDM +YTSDGT LFET+PR + F Sbjct: 181 TSTGTDTSSALDEREKLLKQISSIVGVTSTVRDNNDMALYTSDGTVLFETIPRTVTFAPT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y +E N I+IDGV + + +GS G ++ALLQ+RD + P FQ QLDE+A+ L+ Sbjct: 241 ATYVAGTEGNSIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQAQLDEIAKSLVQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353 FSE D + IS + V + + LRD Sbjct: 301 IFSETDGSTSAPGLFVWTTASGATGATPAASDDATGIASTISVNLAVVTSEGGDATKLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 GS+S N +G+ D ++ ++ + F AG++T+ +L +YA SIGWLE+ Sbjct: 361 -GSISGITDLNTSGDSGFSDNLDALYEALTEQRSFSSDAGLSTSQSLTDYASASIGWLEQ 419 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 RSD+ + + E+YSN GVNL EEL+ L+ +EQSY + K++ D+M Q Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479 Query: 474 TLLEG 478 +LL+ Sbjct: 480 SLLDI 484 >gi|146278770|ref|YP_001168929.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17025] gi|145557011|gb|ABP71624.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17025] Length = 476 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 94/486 (19%), Positives = 178/486 (36%), Gaps = 18/486 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MS+ + A + S+ + NI NA + + RR+ + V VV Sbjct: 1 MSITTALSSALSGLTVTSRGVETAANNIANALTEGFARRELEVSARAYGGEGRGVRVVGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +A G + +F + D S I+ L +L S + Sbjct: 61 NRIIDMTLVGDRRLADAATGDRNTRSAFYESIAKVVGDTA-EGSLLSRITDLSAALASAA 119 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + V+D A+ +V N ++ V R AD I ++ L L + +N Sbjct: 120 SRPESTVRLQDVLDTAQALVSGLNAASDAVLTARRGADASIADQVDQLNAGLESVRDLNL 179 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + D+ D+R ++ ++ I+ + I R N + ++T+ G L + +I Sbjct: 180 RITRLRVTGRDSSALEDERQRVVDSMATIVPLREIERENGQIALFTTGGAALLDGRVAEI 239 Query: 236 NFEKMNS-YTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 F + +S + +DG +S + G + A +RD++ P Q +LD + Sbjct: 240 GFTPTPGLVSASSSLGSLTMDGRPISVPGDPGLMAGGSLSAAFAVRDTLAPNEQQRLDAL 299 Query: 294 ARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 AR LI F+ D + + + L IS V+P+ +LR Sbjct: 300 ARDLIERFTAADSSLSAGDAGLFTDEGLAFDAANASGLAGRISVNGKVDPERGGALRYLR 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 DG + + ++ + A I + +L A + L Sbjct: 360 DGLQSAAGSTGDGTLFNAMSAALDR--------RVPCSAADIEGSFSLAGLATEIVSGLS 411 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + + GV+ +EL L+ +E++Y + K++ D +L Sbjct: 412 SSLLSADQEASFASARRDELQVLVL-GDGVDTDKELEQLLLLERAYAANAKVVTACDALL 470 Query: 473 QTLLEG 478 Q LLE Sbjct: 471 QYLLEM 476 >gi|154250318|ref|YP_001411143.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum Rt17-B1] gi|154154254|gb|ABS61486.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum Rt17-B1] Length = 847 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 121/406 (29%), Gaps = 27/406 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 SL N + + NI NA+ + R+ Sbjct: 5 SLFGTLNTGLLGVYASKLAMNVVAHNIANANTPGFSRQRPELLTMPPIPITSLTQPAVPL 64 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + D ++ + S E + A + + Sbjct: 65 QIGTGVYVRDIKRVRDAFLDIQYRQTNNKYNYWDTITSNLHFVEQLFA-EPSEAGIRYLF 123 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +E + + + ++ EE+VQ+ ++++R D D EI + Sbjct: 124 DSFWSGIEEVITDPTNTAAKRGLVSRTEELVQHMQDLYTRLEQLRTDIDNEIAQRTQQIN 183 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + L +N ++ + K+ +D LD+RD +L ++S++ I + + + Sbjct: 184 AMVKRLADINAKVRTAVSLKYTPNDLLDERDRILDELSDLADIYYYEDAAGQITLRLGNQ 243 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L D+ + E + N ++ GK+K+L +RD V+ Sbjct: 244 IVLTGQNVVDLRALERPFGKGFKEI---------FAGNSIVSINDGKLKSLFDLRDEVLV 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+LDE A L F+ N + + + + Sbjct: 295 RYMNRLDEFALSLSDEFNLIHQDGFNGDGSVTGLKFFNDIEAERIKDSVLYRLAGAKRVE 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + + K ++ + + +P Sbjct: 355 NGPINRISGMSDRIEISDITTKPFIEKGAIVFFNGTNKVFSANVNP 400 Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 41/92 (44%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + + + + EY + + L + + + ++ I GV+L Sbjct: 748 SALRNKKLLNDGLESFNEYLGSVVAELGVESETAMKIKSNTDLMKKEIDGERERVKGVSL 807 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 EE++ +IK +Q++N + +++ D M+ ++ Sbjct: 808 DEEMANMIKYQQAFNAAARVMTAVDDMISRVI 839 >gi|260853472|ref|YP_003227363.1| putative lateral flagellar hook-filament junction protein [Escherichia coli O26:H11 str. 11368] gi|257752121|dbj|BAI23623.1| predicted lateral flagellar hook-filament junction protein [Escherichia coli O26:H11 str. 11368] gi|323158097|gb|EFZ44196.1| flagellar hook-associated protein FlgK [Escherichia coli EPECa14] Length = 458 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 65/484 (13%), Positives = 158/484 (32%), Gaps = 39/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGDLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S ++ + + + + V +G L Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + S+P Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + + +VT+ + + I + Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ S+ GV++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452 Query: 475 LLEG 478 +LE Sbjct: 453 VLEM 456 >gi|307718454|ref|YP_003873986.1| flagellar hook-associated protein [Spirochaeta thermophila DSM 6192] gi|306532179|gb|ADN01713.1| flagellar hook-associated protein [Spirochaeta thermophila DSM 6192] Length = 624 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 61/425 (14%), Positives = 146/425 (34%), Gaps = 29/425 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + +Q A++ N+ NA + Y R+ Sbjct: 3 STFMSIEIGKRGLLAHTQGLATVGHNMSNASVEGYSRQRVNLEAMDPLYMPGLNREETPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V++ + + + + A ++ G S+ + E ++ + S + Sbjct: 63 QIGQGVSIQSIERIRDEILEGRIVAQTNVGGYWETRNSYLLMVEKTY-NEPSDVSVRSLL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 D+ + S + E VI+NA+ +V + R + IR +++++ + + Sbjct: 122 DAFWDAWQELSIHPDEMAARHAVIENAKALVDGIHERYRALSSIRKMIEEDVQATVKEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +++ + +N+ I A + +D +D+RD+L++K++++I ++ R+ ++ ++ Sbjct: 182 DYIARIAHLNEQIVKVKAMGDNPNDLMDRRDLLVEKLAKLINVTVDTRDPDEFTIHVGGR 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + V + N F + S + + GK+ ALL++RD V Sbjct: 242 HLVQGKVYHPFALDP-------RPQNEGFSAVLWEGSTEEVRLEGGKLAALLELRDGDVR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +LD M L+ +E A G+ + N + Sbjct: 295 GEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDGEFDST 354 Query: 345 R----SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + L V + + + + + D+ +G + + Sbjct: 355 YLFRIHGTNPLDPNAQVGIEGVITLSGAEEDVQIAYYPTDTVQDIVNRINTSGAEVSASF 414 Query: 401 LEYAR 405 R Sbjct: 415 DRLGR 419 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 100/343 (29%), Gaps = 15/343 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197 +V+ D ++ + +N + + +A D+ Sbjct: 290 DGDVRGEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + + I + + V TL + + + T T + I+ Sbjct: 350 EFDSTYLFRIHGTNPLDPNAQVGIEGVITLSG---AEEDVQIAYYPTDTVQDIVNRINTS 406 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + + D P F + E + + ++ EN Sbjct: 407 GAEVSASFDRLGRLVLKATPSEDVAFPDFVIRHVEDSGQFLSGYAGI-LAGSGPENAYDW 465 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV-KNLAGYPDLIN 376 DG+ L G++ + NP RD SV+ F G Sbjct: 466 ETVDGVLTLRGGAEYGVAPFAHPSGWVVLNPEVERDPASVAAGFGQEGRPAPPGDGSAAL 525 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + I +T +Y ++ + + +++ + + Sbjct: 526 AVANLRTEPV------MIGRLMTFDDYFAEAVSEIGLKGQQAQIADETQKLIMKDLKDLR 579 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN+ EEL+ +IK + Y S + I + ML L+ + Sbjct: 580 ESISGVNIDEELAQMIKFQHGYAASARFITTFNSMLDLLINRM 622 >gi|288960285|ref|YP_003450625.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] gi|288912593|dbj|BAI74081.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] Length = 469 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 67/481 (13%), Positives = 155/481 (32%), Gaps = 13/481 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSEN 59 MSL A N A + NI A++ N R + + V T R E Sbjct: 1 MSLFAALNSATAGLRTVQTSVKLVSDNIAQANDPNRTRHTAQQSVDASGQVISTTYRREV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + ++ G ++ ++ + + Y +K + ++++ S + Sbjct: 61 DTALMGQVMDLTARDGGSQVTSTYMQQLGDLMRTTNGTPLINDYANKFQAAIKTLSTSPE 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 ++ ++ AE + + V+++ + +I + + L ++ +N+ Sbjct: 121 DETAQYQLVQTAESFSREIRRVSEGVEQLDRNIKDDIGTSVDKVNDLLKQINQINNDSVS 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A+ D+RD L++++S +GI T+ R + + ++T G L + ++ ++ Sbjct: 181 LQGQGSAANAVADKRDGLVRELSGYMGIRTVERPDGRLAIFTPSGLALVDGQQANLTYD- 239 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 I + ++ + + GK+ AL+Q+R + Sbjct: 240 ---------GGNINLQVGNQVTSINNHLATGKLGALIQMRKD--GSTTEPPTPASGDPTT 288 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 K + + + Q + Sbjct: 289 EIIRKLRSQLDEYAKAFTGPTKPGEPTSFADAYDDASPAAAGEQPNQFFTGNDRFTIAIN 348 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 L + N + + F + T G + Sbjct: 349 PKLLDNTNKIKQSAIDDMVTAINAPGRSFSADGLQMKDTTYSAMGSAITGTWMAAAKTAS 408 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +SE Y + GVN+ EE++ L +++ SY S +++ + M L V Sbjct: 409 TTSESNKASMQLLSERYQSQTGVNIDEEIAQLQQLQTSYQASARVMQVANSMFDALEAVV 468 Query: 480 K 480 + Sbjct: 469 R 469 >gi|257457497|ref|ZP_05622665.1| flagellar hook-associated protein FlgK [Treponema vincentii ATCC 35580] gi|257445120|gb|EEV20195.1| flagellar hook-associated protein FlgK [Treponema vincentii ATCC 35580] Length = 625 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 127/353 (35%), Gaps = 24/353 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS A + Q + NI N+ + Y R+ Sbjct: 1 MSTFASIELGKRSLFAHQQSIQTAGHNISNSSTEGYTRQRVQLDSYEPLYRPDLSRAETP 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + V V + + D+ + A + G S+ + E + ++ + S Sbjct: 61 GQIGQGVAVSSITRLRDELLDQRIVAQTDQQGYWETRDSYIYMLEQLY-NEPEDTSVRTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + DS + S V A+ + + + R +Q IR + +IE + + Sbjct: 120 LDQFWDSWQELSVYPESTAARSAVATRAKTLTDSVHHQYRGLQGIRDMINGDIEARVKQV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 F ++ +N+ I A + +D +D+RDVL +K++++I IS + ++ + SD Sbjct: 180 NSFTRQIAALNEEIVKVKAMGDNPNDLMDKRDVLTEKLADLISISVEKVDADESYIIYSD 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G L + + N + + V S + G++ AL+++RD V Sbjct: 240 GMELVQGR------TFRTFGLKSGTGNEGYANVVWEDSGNLAHFGGGRLAALIELRDGDV 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 N+LD MA + ++ A G+ ++N + Sbjct: 294 RDEINKLDTMAMNFVDLVNDIHRNAMGLNGKTGIDFFKEQYFINNTVGNFDRN 346 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 37/357 (10%), Positives = 94/357 (26%), Gaps = 12/357 (3%) Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFK 180 + +V+ D + + +N + Sbjct: 273 NLAHFGGGRLAALIELRDGDVRDEINKLDTMAMNFVDLVNDIHRNAMGLNGKTGIDFFKE 332 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 ++ D+ S I ++ + + TL + Sbjct: 333 QYFINNTVGNFDRNGDGEYDSSYIFRLTGAYSLDPREQIGLEGTLTL---SAGTGTVQVP 389 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T I+ + +D+ P F + E + + Sbjct: 390 YASTDMVADLVDRINRSGAEVVAYLDQNNKLVLKGTAAQDTENPDFVIRHVEDSGRFLAG 449 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ +G +S + NP + D +++ Sbjct: 450 YAGVLTGSGAENAYDWQQPDAVNVLSQEGAQYAVSPIAHPSGWMEINPVVVSDLQNIAAG 509 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + D + I + + T E+ ++ + S Sbjct: 510 YPS-PEGIPYPGDNRAAVAIA----KIRNTPVMVGNTRTFDEFFAEAVTDMGLKGEQSEL 564 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + GVN+ EEL+ +IK + YN + + + ++ML T++ Sbjct: 565 ALNTQTAIGKELRDMRDSISGVNIDEELADIIKFQHGYNATARFVAAVNEMLDTVIN 621 >gi|238916199|ref|YP_002929716.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] gi|238871559|gb|ACR71269.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] Length = 523 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 71/518 (13%), Positives = 161/518 (31%), Gaps = 43/518 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPEN 49 S A A N+ N + K Y R T Sbjct: 3 STFFGLTIAYTGLQAAQTSINVTSHNLANINTKGYTRESASTKAADALRTYARYGTLGSG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + +D+ +++ GQ + S+ + E ++ + Sbjct: 63 VVVDAINQTRDSYYDEKYRNNNTNYGQYNVKNSYMSQIENYL-NEFTLKGYSTEYENFFS 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L + ++ +I+NA+ + FNT + ++ ++ DA+ EI+ + + Sbjct: 122 ALNQLDRTPADTSAKNQLINNAKSLTDYFNTLSTNLRNVQVDANNEIKDAVQQINSLAQN 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY---TSDGTT 226 ++ +N I A+ +A+D DQR+ L+ +S+I+ I+ + + + T +G + Sbjct: 182 ISSLNKQINQIQANYGNANDLKDQRNALIDDLSQIVNITVSESDMGNNLTNLQITINGNS 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN---QGSAVPKGKIKALLQIRDSVV 283 L + D + S G++K L+ IRD Sbjct: 242 LVDGYNYHTLQTVARENPRNVSDAAGLYDIQWENGQEFYIYSDSLSGELKGLIDIRDGCN 301 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + ++ +E K + Q Sbjct: 302 GEIEKYASTTDAAGNSTYKTDADGNILTETESQKDKNTQYKGVPYYQSQLNQFIQTFASS 361 Query: 344 Y----------RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + + L+++ K + D A Sbjct: 362 VNEILNKGVTSDGSAQGISLFVMKENSQALTASTVTVNQALLDNADLLATKYNVSDGEAN 421 Query: 394 IN--------------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 ++ T + + + + + S + + + I + Sbjct: 422 VDLIVDLINTKDARIYDGGTGSFFLESIVSDMSIDSSKAINFTKNYMNLQTTIQNQRLSV 481 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 +GV+ EE L+K +++YN+S+K++ +++ L+ Sbjct: 482 MGVDTDEEAMDLVKFQEAYNLSSKMLSVMNELYDRLIN 519 >gi|241113583|ref|YP_002973418.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861791|gb|ACS59457.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 161/485 (33%), Positives = 255/485 (52%), Gaps = 8/485 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I NN QQ + I NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNSVQSIFNNTGQQSSVISTNIANVGNSDYVRREASVTTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y++ + +L+++ + S Sbjct: 61 TALLAQYLQTNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLTAFQQALQTFGTSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A+++ + NT++ VQ IRA+AD EI ++S L LS+ N+A+K Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ LL++IS I+G+++ VR+NNDM +YTSDGT LFET+PR + F Sbjct: 181 TATGTDTSSALDEREKLLKQISSIVGVTSTVRDNNDMALYTSDGTVLFETIPRTVTFAPT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y +E N I+IDGV + + +GS G ++ALLQ+RD + P FQ QLDE+A+ L+ Sbjct: 241 ATYVAGTEGNSIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQAQLDEIAKSLVQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353 FSE D + IS + V + + LRD Sbjct: 301 IFSETDGSTSAPGLFVWTTASGATGATPAASDDTTGIASTISVNLAVVTSEGGDATKLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 GS+S N +G+ D ++ + + F AG++T+ +L +YA SIGWLE+ Sbjct: 361 -GSISGITDLNTAGDSGFSDNLDALYQALTEQRSFSSDAGLSTSQSLTDYASASIGWLEQ 419 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 RSD+ + + E+YSN GVNL EEL+ L+ +EQSY + K++ D+M Q Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479 Query: 474 TLLEG 478 +LL+ Sbjct: 480 SLLDI 484 >gi|260768775|ref|ZP_05877709.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|260616805|gb|EEX41990.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|315180478|gb|ADT87392.1| hypothetical flagellar hook-associated protein [Vibrio furnissii NCTC 11218] Length = 456 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 66/488 (13%), Positives = 158/488 (32%), Gaps = 43/488 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS+ N A + +N N ++ Y R+ + + V Sbjct: 1 MSMY---NIALSGAMANQVAMNVTAQNTANINSAGYSRKVVDQSAVIYGNAGPNSAGSGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +V + R + + L + ++ + S E + + N S ++ + Sbjct: 58 SVTSIRRVSDQAAVERLRSANTELQHHLAFMSGMKNIESVLGMEGLNVSLG--LNDFFAA 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 LE + + + V+ NA+ + FN + ++ A ++ ++ + L + Sbjct: 116 LEESTLSPESLVYRTQVLANAKSLSARFNGTMNQLSNHLNTAIQQQSTTLTQVNSQLQNV 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I+ +A HD + D D L +S+ +GI+ + + + + T G L Sbjct: 176 ATLNEQIRLASAKGHDISAYQDALDTELSLVSQSMGINVLYNQDGTVELATQSGQPLVVG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S S + +G + G++ A+ +++ QL Sbjct: 236 SHVAQLSVDTSSGDKYSTEITVRFNGESFAFKD---PKGGELGAIDTLKNEQYLPIMAQL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++MA + + + PG + Sbjct: 293 NDMAAGFADAVNALLMTGTDLNGNPGQPLFTYDPANPAST-------------------- 332 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L + + ++ G D+ N+ + V + + +G Sbjct: 333 LSVSNITAAELAFSSNGSVGNADIATELAKLANQPIDIN-----GEQVNIYDVYAQMLGT 387 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + + + V+ EE + L+ +Y+ + K+I ++ Sbjct: 388 VGVVSQKAQGDYKAAMIGLTEAQSARDSISAVSSNEEAANLMMYMNAYSANMKVIATANQ 447 Query: 471 MLQTLLEG 478 M T+L Sbjct: 448 MFDTVLNS 455 >gi|292492369|ref|YP_003527808.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus Nc4] gi|291580964|gb|ADE15421.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus Nc4] Length = 647 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 60/470 (12%), Positives = 149/470 (31%), Gaps = 31/470 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M+ + + + A+ NI N + + R+ T + S V Sbjct: 1 MATGDPLSIGLSGLLAMQRSLATTSHNIANVNTPGFSRQRTELSASLPESTAKGFIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T R + + ++S Q A + + AD + + + +S Sbjct: 61 NVATVRRAYDAFLTEQVQGYTSEYAQFETFHDLAAQIDNLFADP--EAGLSSSLQQFFNS 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + + S +T++ E + F+ ++ + + ++ + + S + Sbjct: 119 MQEMADDPSALAARQTLLTEGEVLAARFHFLDGRLRDLHDSVNTQLRDTVVEVNTLTSSI 178 Query: 171 TVVNDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N I A+DFLDQRD L+ ++++ + ++ + ++N + V +G + Sbjct: 179 AKLNQRIFESHGQNGSQSANDFLDQRDQLIGELAQKVAVTVLPQDNGMLNVLIGNGQPMV 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + Y + + N + + G++ ALL RD + +N Sbjct: 239 VGNHNSKLAILSDPYDSSRLDIGYTTGSDAL--NISNHITGGELGALLSFRDQALEPSRN 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL--------DNKLCQGISETICV 340 QL ++A + +F+ + + + + G I DN + T+ Sbjct: 297 QLGQLALGITQTFNAQHHLGMDLKGELGRDFFSPIDSSAPVSLPRADNTGDGVVEITVSD 356 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + L G + + + + + + L Sbjct: 357 ASKLTDSDYRLERDGVSYTLTRLSDNQVYSLTNFPGGTETVDGLTLDLTAGSMDSGDSYL 416 Query: 401 -------LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + + + + + S ++ N Sbjct: 417 IQPTREAAQNFGVMLTDASRIAAAAPIRTEANLGNKGTGQISAASVTNTN 466 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 54/377 (14%), Positives = 109/377 (28%), Gaps = 23/377 (6%) Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + S + LG+ + + + ++ D I+ Sbjct: 285 SFRDQALEPSRNQLGQLALGITQTFNAQHHLGMDLKGELGRDFFSPIDSSAPVSLPRADN 344 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 I ASK D+ +RD + ++ + N T DG TL Sbjct: 345 TGDGVVEITVSDASKLTDSDYRLERDGVSYTLTRLSDNQVYSLTNFPGGTETVDGLTLDL 404 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T + + + + +I A IR + Sbjct: 405 TAGSMDSGDSYLIQPTREAAQNFGV----------MLTDASRIAAAAPIR------TEAN 448 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L I + S + + ++ + G + +P + Sbjct: 449 LGNKGTGQISAASVTNTNGLPLPVNGQITLSYDEATQQFNVNGGPGGLLSYDPATEGDGK 508 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-------NTNVTLLE 402 F + G +I++ + N +AG+ T E Sbjct: 509 EFTFPTLGGITFTISGTPADGDNFVIHNNTGGVSDNRNALAIAGLQTESSLQGETATYQE 568 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + + + S + + E+ GVNL+EE + L++ +Q++ + Sbjct: 569 HYSRLVVDVGVRTRQAEVNRDTSGALLDQAVEAREGVSGVNLEEEAANLLRFQQAFQAAA 628 Query: 463 KLIMFTDKMLQTLLEGV 479 ++I D M Q+LL V Sbjct: 629 RVISVADDMFQSLLGAV 645 >gi|15642858|ref|NP_227899.1| flagellar hook-associated protein 1 [Thermotoga maritima MSB8] gi|4980572|gb|AAD35177.1|AE001695_3 flagellar hook-associated protein 1 [Thermotoga maritima MSB8] Length = 858 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 57/446 (12%), Positives = 131/446 (29%), Gaps = 30/446 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + N A + + NI NA Y R+ + Sbjct: 4 MSMFGILNTALTGIHAHKLAMNIVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V T D ++ + S E + A + + Sbjct: 64 LQMGTGARVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + + S V+ A+++V ++++R D D EI +S + Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDAEIVQRVSEI 182 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + L +N+ I+ +D LD+RD +L ++S + I+ + + + + Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + R++ + + +F+ + GK+KAL+ +RDS + Sbjct: 243 QIVLNGSTYRELRALER---PYGKGYHELFVGNSQLIL------SDGKLKALIDLRDSSI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +LDE + S + S V + + + Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGNRKLE 353 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + ++ + + D + N + ++ Sbjct: 354 MGPYHTVTGLHS---ANSQAEIEGRRFNSNDVVLSFDGGSSNVLNISAGTTIGDLVGSWN 410 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + S Sbjct: 411 LLGTSLKVGTHAGGYRLYLEDSTGSL 436 Score = 110 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 61/436 (13%), Positives = 120/436 (27%), Gaps = 35/436 (8%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + S + D ES LS + V E+ Sbjct: 427 LYLEDSTGSLRNRLFLSLGDSLSQMGFDTETKGYITIKESDLSGLSSGVYNINVEYILED 486 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + T + ++ ++ E + + D Sbjct: 487 GTRQTETISVDLSSGVNLSNIEAS-----INSSSHLRAQIYADPSTGENMLVIVPDEQLN 541 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 D K+ T TL F+ +T+T S I Sbjct: 542 FDPSAVKVLSDDDFFTESNAFVRNYEVLKYKDTLENIFYGQTGFDPTRPFTITINSTDIE 601 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEM--ARVLIGSFS 302 ID V + K +L R S + F ++ E+ + + Sbjct: 602 IDPAVDTLETLVEKINEKNTGVLADLTPHHSLVFRASSLYDFDLRMMEIKGPQGFFEAVG 661 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLC---QGISETICVNPQYRSNPSFLRDGGSVSK 359 DP + K D +++ + + P + + VS Sbjct: 662 FVDPDGDPTTFDWNTSFTLVSKSDDFTTLSERFKVADILTFDRAPYDEPLNIVNQFEVSS 721 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEY 403 N NLA D + A N + E+ Sbjct: 722 SLATNPANLAVDVGYALENSDWNATSIKPSGGANPELLETIQNLYTRKMLSNGKESFYEF 781 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + L + +L ++++ I + GV+L EE++ +I+ + +++ + K Sbjct: 782 FGGVVSELGVEAETASNLKNNTEILRQEIDNAREEVKGVSLDEEMANMIEYQHAFSAAAK 841 Query: 464 LIMFTDKMLQTLLEGV 479 +I D+M+QT++ V Sbjct: 842 VITAVDQMIQTVINMV 857 >gi|42527853|ref|NP_972951.1| flagellar hook-associated protein FlgK [Treponema denticola ATCC 35405] gi|41818681|gb|AAS12870.1| flagellar hook-associated protein FlgK [Treponema denticola ATCC 35405] Length = 623 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 127/354 (35%), Gaps = 26/354 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 M+ + Q + NI N+ K Y R+ Sbjct: 1 MATFDAIELGKRSLFAHQQSIQTAGHNISNSSTKGYTRQRVNLEAFEPIYRPDLTRAETP 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + VT+ + + D+ + + +G S+ AL E + ++ + S Sbjct: 61 GQIGQGVTIASITRLRDELLDQRIIGATDDLGYWETRNSYIALLEQVH-NEPEDISVRTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + ++ + S D + V E + + R +Q IR +IE + + Sbjct: 120 MDQFWEAWQELSLYPESDAARQVVRTRTETLTDAIHHQFRGLQGIRDMVHGDIEATVKQV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + +N+ I A + +D +D+RD+L +K+S +I IS R+ ++ V + Sbjct: 180 NDLTGRIAKLNEEIVKVKAMGDNPNDLMDKRDLLTEKLSSLIDISVDKRDEDETYVIHTA 239 Query: 224 G-TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 G + R NF+ S N + D + S + GK+ AL+++RD+ Sbjct: 240 GLEIVQGRTHRTFNFKA-------STENDKYADVIWEDSGNLAHFESGKLAALIELRDTD 292 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + +LD M + ++ A + G+ ++N L Sbjct: 293 IRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRN 346 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 35/342 (10%), Positives = 87/342 (25%), Gaps = 14/342 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197 +++ D + + N + ++ D+ Sbjct: 290 DTDIRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 S I I+ + + TL + S + S+ Sbjct: 350 EYDYSYIFRITGTNTLDPREQIGLEGTLTLSSGDG--LVQVPYYSTDMVSDLVERINRSG 407 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + K +K + + +++ R L G Sbjct: 408 SEVAAYLDQNNKLVLKGMTSLDKENPDFVIRHIEDSGRFLAGYSGVLSQAG----PEGAY 463 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 Q I + ++ + +A D Sbjct: 464 DWGRANAVDVLAGAQYAVSPIAHPSGWMEINPVIKSDIQNIASGYKGPEGVAYPGDNRAA 523 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 I + + + T ++ +++ + + + + + Sbjct: 524 ----LAIAAIRNTPVMVGHSATFDDFFADTVTEIGLKGEQAEMTLNTQIAIVKELHDMRD 579 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN+ EELS +IK + YN S + + ++M+ T++ + Sbjct: 580 SVSGVNIDEELSDIIKFQHGYNASARFVSVINEMIDTVINRM 621 >gi|325474917|gb|EGC78103.1| flagellar hook-associated protein FlgK [Treponema denticola F0402] Length = 623 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 65/423 (15%), Positives = 138/423 (32%), Gaps = 28/423 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 M+ + Q + NI N+ K Y R+ Sbjct: 1 MATFDAIELGKRSLFAHQQSIQTAGHNISNSSTKGYTRQRVNLEAFEPIYRPDLTRAETP 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + VT+ + + D+ + + +G S+ AL E + ++ + S Sbjct: 61 GQIGQGVTIASITRLRDELLDQRIIGATDDLGYWETRNSYIALLEQVH-NEPEDISVRTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + ++ + S D + V E + + R +Q IR +IE + + Sbjct: 120 MDQFWEAWQELSLYPESDAARQVVRTRTETLTDAIHHQFRGLQGIRDMVHGDIEATVKQV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + +N+ I A + +D +D+RD+L +K+S +I IS R+ ++ V + Sbjct: 180 NDLTGRIAKLNEEIVKVKAMGDNPNDLMDKRDLLTEKLSSLIDISVDKRDEDETYVIHTA 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G + + S N + D + S + GK+ AL+++RD + Sbjct: 240 GLEIVQGRTH------RTFDFRASTENDKYADVIWEDSGNLAHFESGKLAALIELRDKDI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TIC 339 +LD M + ++ A + G+ ++N L Sbjct: 294 RDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDGEYDS 353 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + L + + + G + + D + +G Sbjct: 354 SYIFRITGTNTLDPREQIGLEGTLTFSSGDGIVQVPYYSTDMVSDLVERINRSGSEVAAY 413 Query: 400 LLE 402 L + Sbjct: 414 LDQ 416 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 35/342 (10%), Positives = 87/342 (25%), Gaps = 14/342 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197 ++++ D + + N + ++ D+ Sbjct: 290 DKDIRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 S I I+ + + T I S + S+ Sbjct: 350 EYDSSYIFRITGTNTLDPREQIGLEGTLTFSSGDG--IVQVPYYSTDMVSDLVERINRSG 407 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + K +K + + +++ R L G Sbjct: 408 SEVAAYLDQNNKLVLKGMTSLDKENPDFVIRHIEDSGRFLAGYSGVLSQAG----PEGAY 463 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 Q I + ++ + +A D Sbjct: 464 DWGRANAVDVLAGAQYAVSPIAHPSGWMEINPVIKSDIQNIASGYKGPEGVAYPGDNRAA 523 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 I + + + T ++ +++ + + + + + Sbjct: 524 ----LAIAAIRNTPVMVGRSATFDDFFADTVTEIGLKGEQAEMTLNTQIAIVKELHDMRD 579 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN+ EELS +IK + YN S + + ++M+ T++ + Sbjct: 580 SVSGVNIDEELSDIIKFQHGYNASARFVSVINEMIDTVINRM 621 >gi|121997313|ref|YP_001002100.1| flagellar hook-associated protein FlgK [Halorhodospira halophila SL1] gi|121588718|gb|ABM61298.1| flagellar hook-associated protein FlgK [Halorhodospira halophila SL1] Length = 685 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 55/406 (13%), Positives = 138/406 (33%), Gaps = 19/406 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 ++ + + + + A+ NI N + Y R+ S V Sbjct: 1 MVDILQTGISGLRASQRGLATTSHNISNVNTDGYSRQRVEQDTSIPHYHSRGAIGTGTQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + +++ L + + + L + + AD + + + + D++E Sbjct: 61 QTIQRLSEDHRVDALRNNHAEYERLDRLAEMTGRIDNLVADQ--DAGLSPSLRQFFDAVE 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + S + + ++ + + F+T + + D +K + E + + Sbjct: 119 EVANDPSNTVSRQQLLTQGQALADRFHTLDNRLLTLEEDVNKRVRAEADKINGLAESIAE 178 Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I T + +D LDQRD ++++SE + + +++ + V +G L Sbjct: 179 LNGEIRSRWTNPQRPPNDLLDQRDEKIRQLSEHVTVRVTEQDDRSLNVGIGNGQPLVTGD 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + N++ + + SAV G + LL+ R+ V+ ++++ Sbjct: 239 RANTLEVTRNAFDPERP--ELAVRRGDREVQITSAVQGGSLGGLLEFRNGVLDETRDEIG 296 Query: 292 EMARVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L G+ +E+ + P + + PQ + Sbjct: 297 RVATSLAGAMNEQHRSGIQFDSGYPEAGDDFFDYAREAGVSAHRGNAGDGQPQVVIDEER 356 Query: 351 LRD---GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + D ++ ++ L + + + + D G Sbjct: 357 IGDLRRENYQARVVDGQLQVLTEDTNEVRTLGTGEDADIQPDADGG 402 Score = 86.6 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 49/431 (11%), Positives = 111/431 (25%), Gaps = 8/431 (1%) Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R ++ + S G S +++ S Sbjct: 258 AVRRGDREVQITSAVQGGSLGGLLEFRNGVLDETRDEIGRVA--TSLAGAMNEQHRS--G 313 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + G D A E + + + + D+E ++ + Sbjct: 314 IQFDSGYPEAGDDFFDYAREAGVSAHRGNAGDGQPQVVIDEERIGDLRRENYQARVVDGQ 373 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + T D + + + L E Sbjct: 374 LQVLTEDTNEVRTLGTGEDADIQPDADGGYRFDGLILYPPDPEAGDLQEGDRFLIEPTRN 433 Query: 234 DINFEKM--NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + T + + P+ Q + +I R V + Sbjct: 434 AAQGIEGRLSRPTQVAAAAPVVTGEAPREDGQTENTGRARIGPPDVGRADGVMAALEEGG 493 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + ++S+ +D + +SE + + Sbjct: 494 ALQQGVEMTYSDDGTFNVTIGGDTVGTFEYDPEDPERGQVVNLSEDVEPVSGAAAEALAE 553 Query: 352 RDGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 D + L G + + ++ + + N N T E +G Sbjct: 554 LDISVRISGVPDDGDRFGLYGNYEGVGDNTNALRMAELMEDTVMDNGNSTFQEAYSAMVG 613 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 L + + N E + GVNL EE + +++ +Q+Y + ++I D Sbjct: 614 ELGGFSQRVQTNRDAQEALLNQAKEQWEELSGVNLDEEAANMMEYQQAYQAAAQIITSAD 673 Query: 470 KMLQTLLEGVK 480 ++ Q +L V+ Sbjct: 674 EVFQEMLNAVR 684 >gi|225569938|ref|ZP_03778963.1| hypothetical protein CLOHYLEM_06033 [Clostridium hylemonae DSM 15053] gi|225161408|gb|EEG74027.1| hypothetical protein CLOHYLEM_06033 [Clostridium hylemonae DSM 15053] Length = 515 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 67/506 (13%), Positives = 145/506 (28%), Gaps = 31/506 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A F AQ + + +N+ N + Y R+ Sbjct: 4 STFAGFTMAQQALSANQRAIDVAGQNLSNINTPGYTRQRLDLASISPVGASFSSSVYDNK 63 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V + D + +G + D+ + + + Sbjct: 64 VGQGVMMKGISQIRDPFLDIQYRNQIAKVGTADAEDQILERLGEIF-DETDSAAVREAFN 122 Query: 106 KLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELEI-SN 162 + L++ + + + E ++ + A V + + K++ + N Sbjct: 123 NVITQLKNMANPQDGGASSTDALVRSSFEVLINAIHEKANAVDALEEEMIKKMTDSVIPN 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+E+ +N+ IK + A + D+R+ LL ++ + I R + Sbjct: 183 INTCLNEIKNLNEEIKNSQILGNPALELQDERNKLLDDLATYLPIEVSYRTDTSGGEPID 242 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 F + ++ + V + G I++ V Sbjct: 243 LLDVTFRDSAGTKHTLISDTKIGEFHFDGTGGIPVSLEVTDALNPGGGASDITDLIQNGV 302 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + L++ G + + L + + P Sbjct: 303 LKGNIDMLNKAEIFDGTDTKGIGYYRGMFDAFVNKLATVMNDLNGDALFEKSDGSGADQP 362 Query: 343 QYRSNPSFLRDGGSVS-----KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT- 396 SN + + + + ++ + V + Sbjct: 363 FTASNIKVSEGWMNGTVSIKKSDGAVGGTGPSTEYKNVQLMINALISDKQVFTVKRPDGA 422 Query: 397 -----NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 T+ N R S + V N IS+S GVN+ EE+ L Sbjct: 423 DVTVFTGTIQNCYDNIQNVQAIERKASASILKNHLTVLNQISDSRDAVSGVNMDEEVMDL 482 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ QSYN +++L+ D+ML L+ Sbjct: 483 MRYHQSYNAASRLMTTMDEMLDKLIN 508 >gi|281418803|ref|ZP_06249822.1| flagellar hook-associated protein FlgK [Clostridium thermocellum JW20] gi|281407887|gb|EFB38146.1| flagellar hook-associated protein FlgK [Clostridium thermocellum JW20] Length = 519 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 182/520 (35%), Gaps = 44/520 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 MS FN A A + I NI N + Y R+ + + S Sbjct: 1 MSSFFGFNVAVKGLFTAQRNMDIINHNINNVNTPGYSRQVAIQSASNPISLLNGTGMLGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V+ D + + + G+ ++ A E+ ++ ++ I+ Sbjct: 61 GSEVLAIERIRDEYLDYKYWSENISYGEWNAKRTLLADMEVTF-NEPSDSGFNAVINSFY 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +SL+ +K+ S D + V + + FN A ++++ D + +++ ++ + + Sbjct: 120 NSLQELAKDPSSDAIRALVKEQGVTFARYFNNIASHFEELQFDINNQVKTVVTEINSLGT 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVY 220 ++ +N I + A+D D+R +L+ ++S+++ I ++ ++ Sbjct: 180 QIAQLNKQIYTAELDGNTANDLRDKRTLLIDELSKLVNIDVNEVVVGKLPNGKDDKRMII 239 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T G + + K + E + + V+ +V G++K LL +RD Sbjct: 240 TISGKAFVDNFDVNKLTIKQRENKLNEEEDIPNLYEVLWEDGNSLSVRGGELKGLLDVRD 299 Query: 281 S-----------VVPIFQNQLDEMARVLIGSFSEK---------DPIAGNSENVPGLFIA 320 +P + +L+E R +F+E + G+ Sbjct: 300 GNDGENGSPNYKGIPYYIRKLNEFVRTFAIAFNEGIVGNDKVAGHVDGYGTNGNTGIRFF 359 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYC 379 + + + + + +VS L + +N+A Sbjct: 360 TILGEENKPISSADFMSAGDIDACYG--KMTAKNFTVSSDILDDPRNIATADTKEQVGNI 417 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + N + ++ ++ I L + + L + + + + Sbjct: 418 GNINSILAMRNNVHMFKEGAPEDFVKSVITTLAIDSQQTIRLSSIHKNMIEQVENQRMSV 477 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GV+L EE++ L+K Q+Y + ++I ++ L+ V Sbjct: 478 SGVSLDEEVANLVKHHQAYAAAAQMINTMAEVYDILINRV 517 >gi|125974728|ref|YP_001038638.1| flagellar hook-associated protein FlgK [Clostridium thermocellum ATCC 27405] gi|256005261|ref|ZP_05430228.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 2360] gi|125714953|gb|ABN53445.1| flagellar hook-associated protein FlgK [Clostridium thermocellum ATCC 27405] gi|255990812|gb|EEU00927.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 2360] gi|316941862|gb|ADU75896.1| flagellar hook-associated protein FlgK [Clostridium thermocellum DSM 1313] Length = 519 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 182/520 (35%), Gaps = 44/520 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 MS FN A A + I NI N + Y R+ + + S Sbjct: 1 MSSFFGFNVAVKGLFTAQRNMDIINHNINNVNTPGYSRQVAIQSASNPISLLNGTGMLGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V+ D + + + G+ ++ A E+ ++ ++ I+ Sbjct: 61 GSEVLAIERIRDEYLDYKYWSENISYGEWNAKRTLLADMEVTF-NEPSDSGFNAVINSFY 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +SL+ +K+ S D + V + + FN A ++++ D + +++ ++ + + Sbjct: 120 NSLQELAKDPSSDAIRALVKEQGVTFARYFNNIASHFEELQFDINNQVKTVVTEINSLGT 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVY 220 ++ +N I + A+D D+R +L+ ++S+++ I ++ ++ Sbjct: 180 QIAQLNKQIYTAELDGNTANDLRDKRTLLIDELSKLVNIDVNEVVVGKLPNGKDDKRMII 239 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T G + + K + E + + V+ +V G++K LL +RD Sbjct: 240 TISGKAFVDNFDVNKLTIKQRENKLNEEEDIPNLYEVLWEDGNSLSVRGGELKGLLDVRD 299 Query: 281 S-----------VVPIFQNQLDEMARVLIGSFSEK---------DPIAGNSENVPGLFIA 320 +P + +L+E R +F+E + G+ Sbjct: 300 GNDGENGSPNYKGIPYYIRKLNEFVRTFAIAFNEGIVGNDKVAGHVDGYGTNGNTGIRFF 359 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYC 379 + + + + + +VS L + +N+A Sbjct: 360 TILGEENKPISSADFMSAGDIDACYG--KMTAKNFTVSSDILDDPRNIATADTKDQVGNI 417 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + N + ++ ++ I L + + L + + + + Sbjct: 418 GNINSILAMRNNVHMFKEGAPEDFVKSVITTLAIDSQQTIRLSSIHKNMIEQVENQRMSV 477 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GV+L EE++ L+K Q+Y + ++I ++ L+ V Sbjct: 478 SGVSLDEEVANLVKHHQAYAAAAQMINTMAEVYDILINRV 517 >gi|260892170|ref|YP_003238267.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4] gi|260864311|gb|ACX51417.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4] Length = 570 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 63/562 (11%), Positives = 159/562 (28%), Gaps = 87/562 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + NI NA Y R+ S Sbjct: 3 STFLGLETTLRALMAMQRSMETAAHNIANASTPGYSRQRVELAASSAYTIPSVLRPAAPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D+ +S +G ++ E++ ++ N + Sbjct: 63 QLGTGVDITGIKRVREEFLDRQWREENSRLGYWEAIRDALGKVELIL-NEPSPNGLGAAL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + ++ + SKN + VI+ + + + E+ +++D D +++ + + Sbjct: 122 TSFFNAWQELSKNSESLAVRTAVIEEGKTLCETIRHLYGELVALQSDLDYRLKVGVDEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN---------- 214 ++ +N I A + +D LDQRD+LL K+S+ + + + Sbjct: 182 TLARQIAELNQQIARSRAVGDNPNDLLDQRDLLLDKLSKWTDFTVQEQPDGQVTVLVGNQ 241 Query: 215 ----------NDMVVYTSDGTTLFETVPRDINFEKMN----------------------S 242 +G ++ + + F+ + Sbjct: 242 QLVSVSGSSSIPNSWQVVNGQVVWASTNTVVGFQTGQLKGLIEVRDRDVKQVIEDLNNLA 301 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV-------------------- 282 T ++ N I G + + G A + + + V Sbjct: 302 STFIAKFNQIHQQGYGLDGQTNRSFFTGTGAADITLSNDVFNTPVALAAANANVTNTNPF 361 Query: 283 -------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + S S + IA I + + Sbjct: 362 TVASNYYLDPTAPLNLSGTFQIKLSNSANWSSVTLAPTDSLNSIATKINSAGAGVTAAVK 421 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + ++ S + + + + + + Sbjct: 422 QNGNQYWLEITSNSQTAIQFADDPTTHVLQQLGVLLLPGDGSNALALAQLASSKTMPPSS 481 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 T ++ R + + + + + S+++ + + +GV+L EE++ +K Sbjct: 482 PTGTFGDFYRGLVAEVGIASAQAVRMTDNSKLLVDQLDNRRQAVMGVSLDEEMANFMKFS 541 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 +Y + + + D+ L L+ Sbjct: 542 HAYAAAARAMTILDEALDILIN 563 >gi|226944498|ref|YP_002799571.1| flagellar hook-associated protein [Azotobacter vinelandii DJ] gi|226719425|gb|ACO78596.1| flagellar hook-associated protein [Azotobacter vinelandii DJ] Length = 541 Score = 169 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 76/542 (14%), Positives = 164/542 (30%), Gaps = 72/542 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNM 62 ++F+ + N A ++ NI N Y R+ T+ + V + + Sbjct: 2 SIFSIGVSGLNAAQVALSTTSNNITNVYTDGYNRQVTLLGENNLGNGVQSNGVQRQFSLF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L+ +S + ++ + + AD + + SL+ + S+ Sbjct: 62 VATQLNQSTSNSSALQAYETQITQIDNLLAD--SEAGLSPLLQSFFSSLQDLASAPSDPA 119 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +I A+ + F + ++ + +IE + + ++ ++N I A Sbjct: 120 ARQGLIGTADTLTAQFRAFDDYLNDMQQGVNGQIEDVVFQINNTAEQIAMLNREIGLAKA 179 Query: 183 -SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + LDQRD L+ ++S ++ + +++ + +G L + Sbjct: 180 KTGTVPNSLLDQRDQLVAELSGMVDVDLTIQDGGSYNISIGNGQALVSGTKSFALEAMAS 239 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S T + +A G++ L+ R + QNQL ++A L F Sbjct: 240 SADPTRTVVGYRDGAGNLREFSETAFEGGELGGLMTFRRETLDKTQNQLGQLAVSLAQGF 299 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + E PG + + ++ ++ S L K Sbjct: 300 NAQHMAGVDYEGNPGQAFFATTQPTVYSNANNT-SNAYLEAEFLADVSGLTASDYTVKYT 358 Query: 362 LWNVKNLAGYPDL---------------------------------------INHYCDSF 382 + + ++ Sbjct: 359 AADGYMVTRNDTGEVVETFAAGASSLEFGGMSVTVNGTPAEGDRFLVQPTKRAAGGLENL 418 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS----DSHDLHMKSQVVFNHISESYSN 438 ++ + + T RN++ S L + + + +N Sbjct: 419 IQDTSLIAAGQDDGSGTGSGDNRNALALQNLQNSALVGGVATLSQAYASIVGDV-GNRAN 477 Query: 439 TVGVNLQ----------------------EELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 V VNL EE + LI+ +Q Y S K+I +L TLL Sbjct: 478 VVQVNLAAQQGLTEQLRALQQSESGVNLDEEAANLIRFQQYYQASAKIIEVGATVLDTLL 537 Query: 477 EG 478 Sbjct: 538 GL 539 >gi|261344136|ref|ZP_05971780.1| flagellar hook-associated protein FlgK [Providencia rustigianii DSM 4541] gi|282567728|gb|EFB73263.1| flagellar hook-associated protein FlgK [Providencia rustigianii DSM 4541] Length = 547 Score = 169 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 78/548 (14%), Positives = 164/548 (29%), Gaps = 75/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L V N A + N A + I N+ NA Y R+ + + Sbjct: 2 LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R E + + G + + +D + + I +L+ Sbjct: 62 SHVRREFDEFVNAQYSQSRARSGDYEAYVKNCNKVDDLLTNDVED--LSSSIGSFFTALD 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + S+ L + + +V F + R +Q++ D + +IE ++ ++ + ++ Sbjct: 120 TASSDASDKTLIDVFLGQSNALVSQFKEADRRLQEMERDINHQIENKVKDINIYADKIAG 179 Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + S + +D LD RD L+ +++ +IG+ I + N + V ++G L Sbjct: 180 LNQQIARIRSVSGSEPNDLLDVRDRLVNEVNSVIGVKVIEQ-NGNYNVTFANGLPLVTGE 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +S + S V A G++ +L+ R V+ +++ Sbjct: 239 KANRLEAVPSSKDDSRFSIGFVGSNGQVREIPDEAFKGGELSGVLRSRQEVIDPAYQKIN 298 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A V F+E +S G K +T + Sbjct: 299 KLALVFATKFNEIHSKGFDSNGNTGKDFFALGKGTVVSNTHNTGKTDFDLSYSDVSKVTG 358 Query: 352 RDGGSVSKKFLWNVKN-LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA-----R 405 + WNV G ++ + F + + Sbjct: 359 NNYEMRYDGTNWNVTRLPDGVKITVDPSSTADTLKFEGLELKMTTNTPAAGDTFVVKPMN 418 Query: 406 NSIGWLEKNRSDSHDLHMKSQ--------------------------------------- 426 I +E +++ Sbjct: 419 GVINNMETLVTEASGFAGAGSKDGGPGDNENIKELVKLQDQKVVDGGSTFSDFYATLIND 478 Query: 427 ----VVFNHISESYS------------NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 I GVN+ EE + K++Q +N + +++ D Sbjct: 479 VGSRTKQAQIDSETQNKMTESFYRQEQEISGVNMNEESIQMQKIQQFFNANAQVLKTVDD 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 LFNALMRA 546 >gi|167576668|ref|ZP_02369542.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis TXDOH] Length = 452 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 69/479 (14%), Positives = 150/479 (31%), Gaps = 32/479 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 + + ASQ + +N+ N+ N Y RR + + V N++ Sbjct: 2 NIIYIGMSGIRAASQSLLATSQNMANSANNEYSRRGVLLSTGLTGGVDASGLLRLNESYK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN---SPTHYISKLRDSLESYSKNLSE 120 + L G+ QS+ E + + + + K +LE+ S N + Sbjct: 62 TQQLWQAGGQYGRYNAAQSYFDQLEALFGGNPVDGKTKANDLGFGKFIGALEAASGNPGD 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +L VI+ A + + FN + +++ + + + +N I Sbjct: 122 SVLRNGVINAANTMTKQFNNMRSVLTNQLRSIEQQRVTTVERVNGLAKTVAELNGKIAAG 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 S D +DQRD + +S + G+ + + N + V ++G L Sbjct: 182 QGSGADVSALMDQRDAAVDDLSRVAGVRVVQQANGTVDVSMTNGQPLVVGAQAGRIELGR 241 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + S + + + L + V+ L +A Sbjct: 242 DAAGQQTLSLAFGSQTMPLRTGSLGGEL----LGLAEFEGEVLRPQMEALRTLAVRTAEL 297 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +++ + PG + T ++ Sbjct: 298 INDQLTQGFDMNGNPGKPL----------------ITYDAATGLLGIDPDVKPEELGFSG 341 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + A LI S + I +V+L +G + + Sbjct: 342 DPANPGDNANLLALIEIGSTSIDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V + + GV+ EE+ +++ + YN + K+I ++ +T L + Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVAGELFETTLNSL 452 >gi|283784090|ref|YP_003363955.1| lateral flagellar hook associated protein 1 [Citrobacter rodentium ICC168] gi|282947544|emb|CBG87097.1| lateral flagellar hook associated protein 1 [Citrobacter rodentium ICC168] Length = 455 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 60/484 (12%), Positives = 156/484 (32%), Gaps = 42/484 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAVVSSIGASAGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + E + +D+ N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTRQEYLTQLETVLSDE--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + V+ + + + + + + + + ++ + S + N Sbjct: 120 TTSPDDAALREQVLSESGALALRIDNTLAYIDSQSDEIVSQEQAMVTQINTLTSGIANYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A D RD +++++S I+ + + + + V ++G L Sbjct: 180 KQIAQAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDKGNYNVTLTNGQPLVSGQQSS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + +++ + ++ + G + AL ++ V+ + ++ MA Sbjct: 240 -----TIALETSADGSRSMSLTFAGTTASMTTDTGGSLGALFDYQNQVLTPLSDTINSMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + PG + + + + S+P Sbjct: 295 AQFADAVNSQLAQGYDLNGNPGEPLFIYDAASSDGPLVVNPDITADKLAFSSSP------ 348 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +G D + + + V++ E I + Sbjct: 349 ------------DESGNSDNLQALIAISTRPLEIANL----GEVSVGEACSAIISNIGIF 392 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V++ V++ EE LI +Q Y + K+I ++ + Sbjct: 393 SQQNQTEAQAAANVYSEAQNQQ---SSVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 449 Query: 475 LLEG 478 +LE Sbjct: 450 VLEM 453 >gi|238755319|ref|ZP_04616662.1| hypothetical protein yruck0001_10770 [Yersinia ruckeri ATCC 29473] gi|238706455|gb|EEP98829.1| hypothetical protein yruck0001_10770 [Yersinia ruckeri ATCC 29473] Length = 547 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 84/549 (15%), Positives = 182/549 (33%), Gaps = 74/549 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS + N A + + A +++ NI N Y R++ + + V Sbjct: 1 MS-NNLINTAMSGLSAAQYALSTVGNNISNFQVTGYNRQNAIFAQNGGILSPAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T+ E + L + + + + + + A+ +N+ + + + Sbjct: 60 TITGINREYNSFISNQLRSAQTESAGLTTYYNQVSQIDNLLAN--KSNNLSVTLQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+D KTV+ AE +V F + + +Q + ++ I + + + ++ Sbjct: 118 LQNLASNSSDDAARKTVLGKAEGLVNQFKNADKYLQDMNNGINQSINDSATKINNYAEQI 177 Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I +S + + LDQRD L+ +++ II +S ++ + V + G L + Sbjct: 178 ANLNDQITRLRGSSGSEPNALLDQRDQLVSELNTIIPVSVTQQDGDAYNVSFAGGLALVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +S T + +G V+ S + G + L+ R + +N Sbjct: 238 GSESYNVRAVPSSADGTRLTLGYDRGNGSEVAEVDESRISTGSLGGTLKFRSEALDNARN 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL ++A + SF+++ + + G + + S+ Sbjct: 298 QLGQLALAMADSFNQQHEKGFDLQGDAGEKFFNFTQPSTISNSNNTGTGSLNVTFADSSQ 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYP-----------------DLINHYCDSFNKNFIFDPV 391 D W + L+ ++ F PV Sbjct: 358 VKASDYSMEFDGTNWQITRLSDKSKIMPKTEADGSLSFDGLNVTVGAGAVLGDKFTVKPV 417 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDS---------------------HDLHMKSQVVFN 430 +G+ +N+ + + I L + + Sbjct: 418 SGVISNLDVAIQDSSKIAAAGSKDGGVGDNTNAKALLGLQTEKLVDGKATLSGAYAGLVS 477 Query: 431 HISES---------------------YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + GVNL EE L++ +Q Y ++++I + Sbjct: 478 TVGNQTSTAKVNATAKVNIVKQLNMEQQSISGVNLDEEYGDLLRFQQYYLANSQVIQASS 537 Query: 470 KMLQTLLEG 478 K+ LL Sbjct: 538 KLFDALLAI 546 >gi|288940415|ref|YP_003442655.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM 180] gi|288895787|gb|ADC61623.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM 180] Length = 723 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 139/429 (32%), Gaps = 15/429 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 +V + A+ NI NA + Y R+ + + V V Sbjct: 2 SVLGTGITGLLAFQRALATTSHNISNAATEGYSRQRVDLATNIPQRLGSGYIGQGVNVDG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + D L S F + + AD + + + + Sbjct: 62 IRRLQNDWIDAQLRTSLSDNASATTRADFAERVDNLLADQ--STGLAPTLESFFAAGQDV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + +++ AE + F + + R A+ +IE I + ++ + +N Sbjct: 120 ASDPTALPARMVLLNEAETLTGRFEAINGRLDEQRRLANGQIETSIEEINQYAESVADLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++ + +D LD+RD +L+K+SE + +S +++ + V+ G L Sbjct: 180 KQIIARSTAGSPPNDLLDRRDTILRKLSEKVDVSLSTQDDGAVNVFIGSGQGLVVGTNAS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 S + + N V G+I LL+ R +++ QN+L A Sbjct: 240 ELTFSNLSGDPVNWDIGLRAAQGNEPINITRFVTGGEIGGLLETRSNLLDKAQNELGLTA 299 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L F+E++ + + + G I + + + N + D Sbjct: 300 LNLADRFNEQNRLGLDLDGELGGDIFELPEVVVNPALNNSINAEPAVTFSDVSQLTPSDY 359 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + L + + D G+ + T + + + WL + Sbjct: 360 RLRYDGANFQLTRLPENTSVTLVPDAADPNVRFAD---GLRIDTTAIAGSASGDSWLIQP 416 Query: 415 RSDSHDLHM 423 + Sbjct: 417 TRFAASGLD 425 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 7/266 (2%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 L P + + T +F + + + L Sbjct: 457 MSSDPLNPASPDTYLPAAIVAGTDAVTGADVFNRLAPRYGTEAGSATVESFRVLDTQHAD 516 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + D + + + I+ N G I V+ Sbjct: 517 LSTPVSVTFDAANNQFVVGQERFALDPTGTTTIQANGWELKIQGTPNTGTTGSVIDIQVD 576 Query: 342 PQYRSNPSFLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN--- 397 + P + + AG + D N + GI Sbjct: 577 TTPVATPQPADTTITGPGWELDIRGTPAAGDLFTVELGKDRPGDNRNMLEMTGIQGERLI 636 Query: 398 ---VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 TL I + + S V + + GVNL EE + +I+ Sbjct: 637 QGRTTLQGGYNTLIADVGTQTRRAQISRDSSAVQLESAQQQRESLSGVNLDEEAANMIRF 696 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I + +M TLL V+ Sbjct: 697 QQAYRAAAQVITTSGEMFDTLLNAVR 722 >gi|322382414|ref|ZP_08056317.1| FlgK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153631|gb|EFX46010.1| FlgK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 472 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 69/459 (15%), Positives = 156/459 (33%), Gaps = 23/459 (5%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 T+ V + + D+ +G + + E + + + Sbjct: 11 TTIPGQMGTGVDMHSITRIRDRFLDEQFRNEYKNLGNWEIQKDTLDKLEGIF-PEPSDTG 69 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + DS +SK+ ++ K + NA + + N ++++++ I DK + ++ Sbjct: 70 LRKVLENFWDSWAEFSKDSDKNTGRKLIRQNAIALTEAINQASKQIKDISQGLDKSLNMK 129 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN----N 215 I ++ L ++ +N+ I A+D D+RD + ++S+++ I+ + Sbjct: 130 IEDVNSILKTISTLNNEITRVEKMGDHANDLRDERDRMTDELSKMMNITVSEGPEGYNIS 189 Query: 216 DMVVYTSDGTTLFETVPRDI----------------NFEKMNSYTVTSESNPIFIDGVVV 259 V GT + I ++Y + I + Sbjct: 190 MGKVNLLSGTEVNPVTKESIEESFKSGDLSSGELAGLITSRDTYVHDYKKQLDDIANTIA 249 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + +PKG + + D V N+ + G P Sbjct: 250 NGEITITIPKGSVLPEGTVLDGVTYTGANRTLTEDLTVTVKGLNGLHQLGYINGNPPEAG 309 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 D +E IC+NP ++P+ + ++ + K ++G L Sbjct: 310 GPFFTTKDGSDVI-TAENICLNPDIINDPNKIAS-SMATEGTGADEKLISGNNTLAKLMA 367 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F F TN T+ ++ + +G L ++ + + ++ Sbjct: 368 QLKDTKFTFSGAGRGITNSTINDFYGSLVGQLGVQSKEATRQYENEGKLVVQADTRRTSV 427 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GV EE+ ++K S+N + + + D++L L+ G Sbjct: 428 SGVVELEEMMEMVKYNHSFNAAARFMTTYDEILNKLING 466 >gi|320538492|ref|ZP_08038355.1| flagellar hook-associated protein FlgK [Treponema phagedenis F0421] gi|320144663|gb|EFW36416.1| flagellar hook-associated protein FlgK [Treponema phagedenis F0421] Length = 625 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 58/414 (14%), Positives = 133/414 (32%), Gaps = 28/414 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS A + Q + N+ N+ Y R+ Sbjct: 1 MSTFASIELGKRSLFAHKQSVQTAGHNVANSSTPGYTRQRVNLDAFEPLYRPDLSRAETP 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + VT+ + + D+ + S G + L E + ++ S Sbjct: 61 GQIGQGVTIGSIVRLRDELLDQRIVGQSYDYGYWNTRDPYVQLLEQVY-NEPDTTSVRTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + DS + S + VI + + + R ++ I+ + +IE + + Sbjct: 120 MDQFWDSWQELSVYPESAAARQAVITRGQTLTDAIHHQYRGLKGIQDMVNGDIEATVKQI 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 +++ +N+ I A + +D +D+RDV ++K++ +I IS R+ ++ V + Sbjct: 180 NDLTAKIAALNEEIVKSKAMGDNPNDLMDKRDVYVEKLANLIDISVDKRDIDETYVIHTA 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G L + + N + + + S + + GK+ +L+++RD + Sbjct: 240 GLELVQGKTHKTFGLVSGTE------NDGYANVIWDDSKERAHFASGKLASLIELRDGDI 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TIC 339 +LD M + ++ A G+ ++N Sbjct: 294 RDEIRKLDTMTMNFVDLVNDVHKNAMGLNGKTGIDFFKEQYFINNIDGNFDRNGDGEYDS 353 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L + + + G ++ + D + A Sbjct: 354 SYIFRITGAHPLDPRQQIGLEGSITLSAADGTVEVPYYLTDMVSDLVARINQAN 407 Score = 110 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/342 (11%), Positives = 90/342 (26%), Gaps = 12/342 (3%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197 +++ D + + +N + ++ D+ Sbjct: 290 DGDIRDEIRKLDTMTMNFVDLVNDVHKNAMGLNGKTGIDFFKEQYFINNIDGNFDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 S I I+ + + TL D E T I+ Sbjct: 350 EYDSSYIFRITGAHPLDPRQQIGLEGSITL---SAADGTVEVPYYLTDMVSDLVARINQA 406 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + + P F + E + + ++ +G Sbjct: 407 NAEVVAYLDQNNQLVLKGTTSANPDNPDFVIRYVEDSGRFLAGYAGVLAQSGEGGAYNWE 466 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 +S + NP D +++ + + + Sbjct: 467 QANAIAALAPEGAQHAVSPIAHPSGWMEINPEVKTDIQNIAAGYPGSEGVPYAGDNR--- 523 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + + + T ++ ++ + S + +++ Sbjct: 524 --AALAVAKLRNSPVMVGDKRTFDDFFAEAVTAIGLKGEQSQLALETQTAILKELTDMRD 581 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EELS +IK + YN S + I ++ML T++ + Sbjct: 582 AVSGVNIDEELSDIIKFQHGYNASARFIATVNEMLDTIINRM 623 >gi|300918686|ref|ZP_07135266.1| flagellar hook-associated protein FlgK [Escherichia coli MS 115-1] gi|300414160|gb|EFJ97470.1| flagellar hook-associated protein FlgK [Escherichia coli MS 115-1] Length = 547 Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGEGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASALL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|157146220|ref|YP_001453539.1| flagellar hook-associated protein FlgK [Citrobacter koseri ATCC BAA-895] gi|157083425|gb|ABV13103.1| hypothetical protein CKO_01977 [Citrobacter koseri ATCC BAA-895] Length = 544 Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 65/545 (11%), Positives = 158/545 (28%), Gaps = 71/545 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L A + + + + + + + + + SL+ Sbjct: 61 SGVQREYDSFITNQLRAAQNQSSGLTVRYEQMSKIDNLLSSTTSSI--STSLQGFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGSSVEQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------------ 278 +S + + + G + LL Sbjct: 239 SSARQLAAVPSSADPSRTTVAYVDATAGNIEIPEKLLNSGSLGGLLTFRSQDLDQTRNTL 298 Query: 279 ------------------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 D+ ++ ++ + ++E + Sbjct: 299 NQLALAFAEAFNAQHKQGYDANGDQGEDFFSIGKPSVLSNAKNTGSGTLSAEVTDSSAVQ 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L + N +++ + + + + N L Sbjct: 359 ATNYKLVFDGQDWQVTRLSDNTSFKAVETNGKLTFDGLEVTVGAGANANDSFTLKPVSDA 418 Query: 381 SFNKNFIFDPVAGIN---------------------------TNVTLLEYARNSIGWLEK 413 N N + + I N + + + + Sbjct: 419 IVNMNVLVTDESKIAMASDPDAGGSDNRNGQALLDLQTQKTVGNKSFNDAYATMVSDVGN 478 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + V + + GVNL EE L + +Q Y + +++ + + Sbjct: 479 KTATLKTSSTAQGNVVTQLYNQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANTLFD 538 Query: 474 TLLEG 478 LL Sbjct: 539 ALLGI 543 >gi|24217008|ref|NP_714489.1| flagellar hook-associated protein FlgK [Leptospira interrogans serovar Lai str. 56601] gi|24198413|gb|AAN51507.1| flagellar hook-associated protein FlgK [Leptospira interrogans serovar Lai str. 56601] Length = 636 Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 59/390 (15%), Positives = 131/390 (33%), Gaps = 25/390 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + Q + NI NADNK+Y R+ T Sbjct: 3 STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + + N D + S + E + ++ + + Sbjct: 63 QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLETVF-NEPNGTTLRTLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K S E + ++ V++ A + R++ ++R A++EIE + +L Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N+ I A +D D+RD LLQ++S ++ ++ + ++++V+ Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ S +D ++ + KG+++ L+++RD V+ Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRDKVIR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +Q+D ++ ++ + +E + N + S N Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNGDGQNDVT 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 R+ + N D+ Sbjct: 355 AIFRVTGRNTVDPDRPIGINGTITFHQSDV 384 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/422 (10%), Positives = 123/422 (29%), Gaps = 9/422 (2%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D +L SS + + L + + + I + + + +L Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLFWSAT 271 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180 G V+ + + +++ D + + + +N Sbjct: 272 GDPVLLRKGRLQGLIEVRDKVIREKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFN 331 Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + D ++ I ++ + D + + T ++ ++ Sbjct: 332 IRSLSINTFGEYDSNGDGQNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDVKESPILI 391 Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 S T I+ GVV N + + A + + ++ Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHIEDSGDLLV 451 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G P G ++ D L S + + + Sbjct: 452 GMTGILMASGPSGAYDYRRLGEINKLQVRSEDVTLTPHFHP-ASHFRVADSIANNVANIA 510 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + K + + + + + + ++ + T ++ I L Sbjct: 511 AARGKDVGGTGDYNSPGGHKDGRNALMVASALRNSPVMVDYSKTTDDFYNTLISKLGTEA 570 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + + + +GVNL EE++ +++ + +YN S K+I +++L T+ Sbjct: 571 REAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHAYNASAKMINTMNEILDTI 630 Query: 476 LE 477 + Sbjct: 631 IN 632 >gi|170737044|ref|YP_001778304.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia MC0-3] gi|169819232|gb|ACA93814.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia MC0-3] Length = 429 Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 64/459 (13%), Positives = 150/459 (32%), Gaps = 32/459 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79 RN N Y R+ + T + V + + + A ++G+ R Sbjct: 1 MDRSARNTANQQTVGYTRQGVLRTARASGGVDASSVIRFGDHANTQQKWASHGSVGEHRA 60 Query: 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 ++S+ E + + S + K +L++ S +++ L + V+ A + ++FN Sbjct: 61 VESYFRQLEEVMGL--KDGSIKVSMGKFFGALDAASADVANSALRQQVLLAAGGMAKSFN 118 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 + + ++ ++ + + +N + A+ + +DQRD + Sbjct: 119 SVQQMMRGQLDTLRQQSAATVEQINGLSRTAAELNRLVAEAEANGGAPSELIDQRDQAID 178 Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259 ++S ++ I T+ + + + V + GT L KM T++ + + ++ Sbjct: 179 QLSALVDIRTVRQPDGTVDVSLAGGTPLI----AGHQVAKMRVETLSGGTFELKLELAGT 234 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 A G++ L + + +A L GSF+E+ PG + Sbjct: 235 QYPVDGAKIGGELGGLSSFAKDTLLPQMEAIRSLAAELAGSFNEQVTAGFGMGGSPGKAL 294 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + P G D + Sbjct: 295 FTFNPVTGHLTANEMKPEELGFSGDPKAP---------------------GNSDNLLKLI 333 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + ++ +L + +G L + + V E++ + Sbjct: 334 ELRSRRVDLPGF----GEASLGDAYVLLVGKLGAQSEQNQSSLAIAVNVRQRAEEAWQSL 389 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GV++ EE + Q Y+ + K+I ++ + Sbjct: 390 SGVSMDEEAVNFSEALQVYSANMKVISVAKELFDATIRA 428 >gi|116326933|ref|YP_796653.1| flagellar hook-associated protein FlgK [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332402|ref|YP_802120.1| flagellar hook-associated protein FlgK [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119677|gb|ABJ77720.1| Endoflagellar hook junction protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126091|gb|ABJ77362.1| Endoflagellar hook junction protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 636 Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 55/457 (12%), Positives = 141/457 (30%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + Q + NI NADNK+Y R+ T Sbjct: 3 STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + + N D + S + E + ++ + + Sbjct: 63 QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLEAVF-NEPNGTTLRTLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K S E + ++ V++ A + R++ ++R A++EIE + ++ Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKAYHMN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N+ I A +D D+RD LLQ++S ++ ++ + ++++V+ Sbjct: 182 TIAENIRTLNERIGKSEALGDKPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ S +D ++ + KG+++ L+++RD ++ Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLYWSATGDPVLLRKGRLQGLIEVRDKIIR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +Q+D ++ ++ + +E + N + Sbjct: 295 EKIDQVDSLSINVMDAVNEIHKDGFGINGNTNQAFFNVRSLSINTFGEYD----SNGDGQ 350 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + R G + + + ++ + Sbjct: 351 NDITAIFRVTGRNTIDPDRPIGINGAISFNQSDVKEASVLIPYSSNDTLNGIIKKINASR 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + ++ + + + + + G Sbjct: 411 SGVVAYMNHDNQLALKATVADDHPNKNFILRHLEDSG 447 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 46/422 (10%), Positives = 120/422 (28%), Gaps = 9/422 (2%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D +L SS + + L + + + I + + + +L Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLYWSAT 271 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180 G V+ + + +++ D + + + +N Sbjct: 272 GDPVLLRKGRLQGLIEVRDKIIREKIDQVDSLSINVMDAVNEIHKDGFGINGNTNQAFFN 331 Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + D I+ I ++ + D + + + ++ ++ + Sbjct: 332 VRSLSINTFGEYDSNGDGQNDITAIFRVTGRNTIDPDRPIGINGAISFNQSDVKEASVLI 391 Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 S T I+ GVV N + + A + + ++ Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHLEDSGDLLV 451 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G P G + D L + + Sbjct: 452 GMTGILMASGPSGAYDYKRLGEINKLQARSEDITLTPHFHPSSHFRVADSIANNVANIAA 511 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + K + + + + + ++ + T ++ I L Sbjct: 512 ARGKDVGGTGDYNSP-GGHKDGRNALMVASALRNNPVMVDYSKTTDDFYNTLISKLGTEA 570 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + + + +GVNL EE++ +++ + SYN S K+I +++L T+ Sbjct: 571 REAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHSYNASAKMINTINEILDTI 630 Query: 476 LE 477 + Sbjct: 631 IN 632 >gi|28211376|ref|NP_782320.1| flagellar hook-associated protein 1 [Clostridium tetani E88] gi|28203817|gb|AAO36257.1| flagellar hook-associated protein 1 [Clostridium tetani E88] Length = 579 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 67/584 (11%), Positives = 149/584 (25%), Gaps = 110/584 (18%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------- 45 MS L + ++ + N+ NA+ + Y R+ Sbjct: 1 MSGLFGTLHVGKSGIFANQKAIDVTSHNMANANTEGYSRQRAELQTERPFCTPSMNNAVG 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLH-----------------------AHSSAIGQQRL 79 V V D + + S G L Sbjct: 61 AGQLGRGVNVADINRVRDAFLDYQVRIELGVQGTYVERNKFLNEIENIFSEPSETGISTL 120 Query: 80 LQSFEALKEMMSADDHYNNS----------PTHYISKLRDSLESYSKNL--------SED 121 L F + +S H +N+ T ++ L L N ++ Sbjct: 121 LGKFYKGWQELSKQPHSSNARTVVAEQSKALTDELNHLHKQLNKLKDNTKNCIRQDLNDV 180 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 ++ E + T+ + + D I+ S + + + I Sbjct: 181 NSILDQMERLNEEIIQITTAGQRPNDLLDKRDLLIDKLSSKFGINIDKKGLNAIDINTNG 240 Query: 182 ASKHDAHDFLDQRDVLLQKIS--------------------EIIGISTIVRNNNDMVVYT 221 + + + S I+ + Sbjct: 241 QKGSEPPKDKNLIQAVNPDESVRLAYISSIEPDGKHKPGEAGKYKITYYKNADITDDKNK 300 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQ 277 +T V S G + + Sbjct: 301 VTFEINLNETQYKELDRSRTLWTDKKGDTLDKDGNVKKSPQFDDLKIFNPNTGNLNGYMT 360 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 ++D + QLD++AR L + + + + F+ + + Sbjct: 361 VQDDIDVQ-IEQLDKLARSLAYTVNAVHSQSEGYSDKDLFFVNKD----GGPEHEITAGN 415 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-------------- 383 I + + N ++ G K + +L++ N Sbjct: 416 ITIKKEILENVMNIK-VGKGDKPGETDGTRALAIANLMDKLMAIQNLDLTEKDRREALVK 474 Query: 384 -------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + +T Y ++ + L ++ + +V ++ +S Sbjct: 475 LGSGWGPDEAGINTITANTNGMTYGGYFKDVVDKLGVQSQEAKRMVKNQFIVLSNFQQSR 534 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GV++ EE + LI+ + +Y + K+I D++L ++ G+K Sbjct: 535 EQASGVSIDEETTNLIQFQHAYQANAKIISTVDELLDVVINGLK 578 >gi|152965588|ref|YP_001361372.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans SRS30216] gi|151360105|gb|ABS03108.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans SRS30216] Length = 482 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 86/501 (17%), Positives = 157/501 (31%), Gaps = 40/501 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS + N A A + + +NI N + Y R+ + S Sbjct: 1 MSTFSGINTASRALGAAQRGMETTGQNIANVNTPGYSRQRVEQSSSVLNQTGQFTQKYVP 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + V V + + S+A +Q S + E D + + + Sbjct: 61 GDGVVVNGLTRVSDALATATARQDSAAAQEQATAASIWSGVENAIGDTGA-SGLSENLKD 119 Query: 107 LRDSLESYSKNLSEDILGKT---VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L + + D L VI ++ V +++ + + + Sbjct: 120 LSSAWNDLAAKAGTDGLAGAQSLVITRSQTVATQIVGMNTQLEGQYDQLTLQADTLATQA 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + +N I+ TAS A++ +DQRD LL ++S+I G + R N + V + Sbjct: 180 NTIAGNIAKLNTGIRETTASGASANELMDQRDQLLNQLSDITGSRVVHRENGTVDVLVGN 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNP----IFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T + D+ S T T+ P I V Q + G +KA Sbjct: 240 ATIVTGDFSYDLKIGVQESTTSTAPIAPGAERIGNQLVATIGGQNAGPVAGSLKATFDGA 299 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + Q L++ A L + S G S Sbjct: 300 NKTLADQQKGLNDFATDLTTKVNAAYGTTFFSSVEAGWTTGPVKAAQLTVSVTTTSFRDS 359 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + +VS+ F A Sbjct: 360 TGTGTGTGSADRAYARAVSEAFNGAPAKPAVGTTPAKPAVTG------------------ 401 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + + R + L + +++ S V S GVNL EE++ L+ + +Y+ Sbjct: 402 IKDGWRTHVTNLAASTQSANNRAELSAQVSLKSSAVRDGVSGVNLDEEMTNLVAYQHAYS 461 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + K++ D+ LQ+LL V+ Sbjct: 462 AAAKVLTTMDEALQSLLNMVR 482 >gi|323175237|gb|EFZ60850.1| flagellar hook-associated protein FlgK [Escherichia coli LT-68] Length = 547 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|291280513|ref|YP_003497348.1| flagellar hook-associated protein 1 FlgK [Deferribacter desulfuricans SSM1] gi|290755215|dbj|BAI81592.1| flagellar hook-associated protein 1 FlgK [Deferribacter desulfuricans SSM1] Length = 584 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 130/415 (31%), Gaps = 20/415 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + +F + + NI N + + Y R+ V Sbjct: 4 IFGIFQTGVSGLMVSQAGIDVTGHNIANVNTEGYSRQRLSIETEIPLLIHPGPFGRGAKV 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ K L +S + LQ E + + + + ++ Sbjct: 64 SSVLRTYDDVLAKNLRDSTSNLRYYESLQQSLESVETYFNELEAGSGLGDALKEYFNAWS 123 Query: 113 SYSKNLSE-----DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + + T+I+ +E ++Q + + ++++R +D+ I+ + + Sbjct: 124 DLSNTAPDKSDEATVKRVTLIEKSETLIQKIHDGYQSIEEVRNRSDENIKEYVKEINDLA 183 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + N I A+D D+R++LL K+SE++ I T R + M V+ + Sbjct: 184 ENIAYYNFQIAKTETGGDHANDMRDKRELLLNKMSELVNIKTFEREDGQMSVFIGGIAIV 243 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + + N + G++ A L+ RD V+ +Q Sbjct: 244 DGSTANSLYAVENDENDGHYDIYWGAHLIDKAQVNITDKISSGRMYAELKARDDVLKGYQ 303 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 N LDE A+ LI ++ + + + QY N Sbjct: 304 NTLDEFAKNLILKTNQIHSLGQG-----LKRFSQITSTNGVENPSYKFSEDPGKLQYDIN 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 R S + ++ P + + G L E Sbjct: 359 KGVFRITVYNSDGLKTDDFDIEVDPSKDSLNSIIEKISQADGNAGGGIIQAYLSE 413 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/431 (10%), Positives = 115/431 (26%), Gaps = 15/431 (3%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 ++ R+ + + + + + + + N L + Sbjct: 160 SIEEVRNRSDENIKEYVKEIN---DLAENIAYYNFQIAKTETGGDHANDMRDKRELLLNK 216 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + ++A + + D + ++ + Sbjct: 217 MSELVNIKTFEREDGQMSVFIGGIAIVDGSTANSLYAVENDENDGHY----DIYWGAHLI 272 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 I K +S + + DVL + + + + + + G F Sbjct: 273 DKAQVNITDKISSGRMYAELKARDDVLKGYQNTLDEFAKNLILKTNQIHSLGQGLKRFSQ 332 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + E + + V K D + + Sbjct: 333 ITSTNGVENPSYKFSEDPGKLQYDINKGVFRITVYNSDGLKTDDFDIEVDPSKDSLNSII 392 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFI---ADGIKDLDNKLCQGISETICVNPQYRSN 347 +++++ + + + + DN + Sbjct: 393 EKISQADGNAGGGIIQAYLSEGGKLKIQVKDGYTFSFSEDNSNILAALGMYGYFKGTDAK 452 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L D F+ K + I + N +FD VT ++ Sbjct: 453 TIELNDIVKNDNSFIATSKTGEPGDNQIALAISNLKFNEVFDEKG-----VTFDQFYTTF 507 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + ++ + N ++ GV+L EE + LIK +++Y + + I Sbjct: 508 VSQIASDKKQVDTFVDAKKEAVNQLTLKLDEVKGVSLDEEFTNLIKFQKAYEANARFITA 567 Query: 468 TDKMLQTLLEG 478 D+ML L+ G Sbjct: 568 VDEMLDRLING 578 >gi|82544453|ref|YP_408400.1| flagellar hook-associated protein FlgK [Shigella boydii Sb227] gi|81245864|gb|ABB66572.1| hook-filament junction protein 1 [Shigella boydii Sb227] gi|320173535|gb|EFW48731.1| Flagellar hook-associated protein FlgK [Shigella dysenteriae CDC 74-1112] gi|332094064|gb|EGI99116.1| flagellar hook-associated protein FlgK [Shigella boydii 3594-74] Length = 547 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|157159090|ref|YP_001462316.1| flagellar hook-associated protein FlgK [Escherichia coli E24377A] gi|209918336|ref|YP_002292420.1| flagellar hook-associated protein FlgK [Escherichia coli SE11] gi|218553660|ref|YP_002386573.1| flagellar hook-associated protein FlgK [Escherichia coli IAI1] gi|300821137|ref|ZP_07101286.1| flagellar hook-associated protein FlgK [Escherichia coli MS 119-7] gi|331676873|ref|ZP_08377569.1| flagellar hook-associated protein FlgK [Escherichia coli H591] gi|157081120|gb|ABV20828.1| flagellar hook-associated protein FlgK [Escherichia coli E24377A] gi|209911595|dbj|BAG76669.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli SE11] gi|218360428|emb|CAQ97982.1| flagellar hook-filament junction protein 1 [Escherichia coli IAI1] gi|300526436|gb|EFK47505.1| flagellar hook-associated protein FlgK [Escherichia coli MS 119-7] gi|323947616|gb|EGB43620.1| flagellar hook-associated protein FlgK [Escherichia coli H120] gi|324017414|gb|EGB86633.1| flagellar hook-associated protein FlgK [Escherichia coli MS 117-3] gi|331075562|gb|EGI46860.1| flagellar hook-associated protein FlgK [Escherichia coli H591] Length = 547 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|288958563|ref|YP_003448904.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] gi|288910871|dbj|BAI72360.1| flagellar hook-associated protein 1 [Azospirillum sp. B510] Length = 465 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 58/474 (12%), Positives = 137/474 (28%), Gaps = 16/474 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61 SLL+ A + + NI A++ R + T + R + Sbjct: 3 SLLSALQTATASLRAVQTNVSVVSGNIAKANDPTRTRHVAQQPLDGNGQTATSYRRDADE 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + A ++ + + Y S + + ++ + Sbjct: 63 VLKGQVEALTARESGAATQAGYMRELGGLLRTSGGKPLLNSYASSFQAAWKTLEASPESR 122 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 ++ A+ + V+ + +++ ++ L E+ +N+ I Sbjct: 123 TAKIELVRAADRFAGEIRRVSDGVETLGRSMQTDLKNSVAATNGLLKEIAALNERIGSGK 182 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A +D+RD L+++++ IG+ ++ R + + ++T G L + P + + + Sbjct: 183 -DGDAALSAMDRRDQLIKELNGYIGVRSMTRGDGRVALFTGSGMMLLDATPVTLTTDGNS 241 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + E+ + + + +L L F Sbjct: 242 VRLSSGEAVDGHVKDGKIGALMSMLRDGSTADPPKPADGEPTAEVIRKLRSQLDGLAQGF 301 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + P F + K + K Sbjct: 302 -----VGETRPGEPKSFRDAYDEAKPAKSGE----------APAGFFQGKDRFTLAVKPS 346 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 L + + L D ++ + G ++D Sbjct: 347 LLDERESVKTSALSPVVRALNATGRQLDADGLKTSDSSYTGMVSAFTGSWATAAKAANDQ 406 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + E Y GVNL EE++ L +++ +Y S +++ M TL Sbjct: 407 QGQEKAALQLVDERYHAKTGVNLDEEIATLQQLQTAYAASARILQTVKAMHDTL 460 >gi|256018661|ref|ZP_05432526.1| flagellar hook-associated protein FlgK [Shigella sp. D9] gi|332279730|ref|ZP_08392143.1| flagellar hook-filament junction protein 1 [Shigella sp. D9] gi|323185795|gb|EFZ71156.1| flagellar hook-associated protein FlgK [Escherichia coli 1357] gi|324117347|gb|EGC11254.1| flagellar hook protein FlgK [Escherichia coli E1167] gi|332102082|gb|EGJ05428.1| flagellar hook-filament junction protein 1 [Shigella sp. D9] Length = 547 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|15639647|ref|NP_219097.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp. pallidum str. Nichols] gi|189025885|ref|YP_001933657.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp. pallidum SS14] gi|3322960|gb|AAC65634.1| flagellar hook-associated protein 1 (flgK) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018460|gb|ACD71078.1| flagellar hook-associated protein 1 [Treponema pallidum subsp. pallidum SS14] gi|291060027|gb|ADD72762.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp. pallidum str. Chicago] Length = 625 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 63/423 (14%), Positives = 133/423 (31%), Gaps = 28/423 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS A + Q + N+ N+ Y R+ Sbjct: 1 MSTFASIELGKRALYAHKQSVQTAGHNVSNSSTPGYSRQRVNLDSFEPLYRPDLSRAQLP 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + VT+ + + D + + + G ++ L E + ++ + + Sbjct: 61 GQIGQGVTIGSIARLRDQLLDSRIVSQTDEQGYWSTRDAYVRLLEQVY-NEPEDIAVRTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + D + S + V+ A+ + + R + IR + +IE + + Sbjct: 120 LDQFWDGWQELSVYPEARAARQVVLTRAQTLTDAIHHQYRGLVGIRDMLNADIEATVEQV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L+++ +N+ I A + +D LD+RD L++ ++ I + VR+ ++ V S Sbjct: 180 NDLLAKIAQLNEQIVKSKAMGDNPNDLLDRRDTLVESLAHRIEVRVDVRDEDESYVIHSA 239 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G + + + ++ V S + GK+ AL+++RD+ V Sbjct: 240 GLEVVQGKSYKTLGLVSGTTPEG------YVSVVWKDSGDRAHFSGGKLAALIELRDTDV 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS----ETIC 339 +LD MA + + A GL ++N + Sbjct: 294 RDELRKLDTMAMNFVDLVNNVHRNAMGLNGKTGLDFFKEQYFINNVDGNFDRDGDGQYDS 353 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S L V + + G ++ D A Sbjct: 354 SYIFRISGAHALDAREQVGLTGVITLSAADGTVEVPYAATDMVADVVARINQANAEVTAY 413 Query: 400 LLE 402 L + Sbjct: 414 LDQ 416 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 46/357 (12%), Positives = 95/357 (26%), Gaps = 12/357 (3%) Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTA 182 + ++ +V+ D + + +N + Sbjct: 275 AHFSGGKLAALIELRDTDVRDELRKLDTMAMNFVDLVNNVHRNAMGLNGKTGLDFFKEQY 334 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ D+ S I IS + V + TL D E + Sbjct: 335 FINNVDGNFDRDGDGQYDSSYIFRISGAHALDAREQVGLTGVITL---SAADGTVEVPYA 391 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T I+ + +S P F + E + + ++ Sbjct: 392 ATDMVADVVARINQANAEVTAYLDQNHKLVLKATTAHNSDNPDFVIRHVEDSGRFLAGYA 451 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 +G +S NP+ L D SV+ + Sbjct: 452 GLLAASGAEGAFDWQRADAIAALDQAGAQHAVSPIAHPAGWMELNPAVLSDVYSVAAGYP 511 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + + I T E+ + + Sbjct: 512 SAEGLPHAGDNR-----AALAIASLRNSPVMIGNRHTFDEFFAEVTTAIGLKGEQAERSM 566 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +++ T GVN+ EEL+ +IK + YN S + I ++ML T++ + Sbjct: 567 QMHAAILKELTDMRDATSGVNIDEELADIIKFQHGYNASARFIAAVNEMLDTVINRM 623 >gi|194438121|ref|ZP_03070214.1| flagellar hook-associated protein FlgK [Escherichia coli 101-1] gi|253773894|ref|YP_003036725.1| flagellar hook-associated protein FlgK [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161188|ref|YP_003044296.1| flagellar hook-associated protein FlgK [Escherichia coli B str. REL606] gi|300928366|ref|ZP_07143900.1| flagellar hook-associated protein FlgK [Escherichia coli MS 187-1] gi|194423057|gb|EDX39051.1| flagellar hook-associated protein FlgK [Escherichia coli 101-1] gi|242376886|emb|CAQ31603.1| flagellar biosynthesis, hook-filament junction protein 1, subunit of Flagellum [Escherichia coli BL21(DE3)] gi|253324938|gb|ACT29540.1| flagellar hook-associated protein FlgK [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973089|gb|ACT38760.1| flagellar hook-associated protein K [Escherichia coli B str. REL606] gi|253977303|gb|ACT42973.1| flagellar hook-associated protein K [Escherichia coli BL21(DE3)] gi|300463624|gb|EFK27117.1| flagellar hook-associated protein FlgK [Escherichia coli MS 187-1] gi|323962681|gb|EGB58259.1| flagellar hook protein FlgK [Escherichia coli H489] gi|323973329|gb|EGB68518.1| flagellar hook protein FlgK [Escherichia coli TA007] gi|332342628|gb|AEE55962.1| flagellar hook-associated protein FlgK [Escherichia coli UMNK88] Length = 547 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|16129045|ref|NP_415600.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K-12 substr. MG1655] gi|89107928|ref|AP_001708.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K-12 substr. W3110] gi|170080733|ref|YP_001730053.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K-12 substr. DH10B] gi|238900336|ref|YP_002926132.1| flagellar hook-filament junction protein 1 [Escherichia coli BW2952] gi|256023220|ref|ZP_05437085.1| flagellar hook-associated protein FlgK [Escherichia sp. 4_1_40B] gi|307137717|ref|ZP_07497073.1| flagellar hook-associated protein FlgK [Escherichia coli H736] gi|331641626|ref|ZP_08342761.1| flagellar hook-associated protein FlgK [Escherichia coli H736] gi|2506419|sp|P33235|FLGK_ECOLI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|1651528|dbj|BAA35891.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K12 substr. W3110] gi|1787323|gb|AAC74166.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K-12 substr. MG1655] gi|169888568|gb|ACB02275.1| flagellar hook-filament junction protein 1 [Escherichia coli str. K-12 substr. DH10B] gi|238861110|gb|ACR63108.1| flagellar hook-filament junction protein 1 [Escherichia coli BW2952] gi|260449778|gb|ACX40200.1| flagellar hook-associated protein FlgK [Escherichia coli DH1] gi|315135714|dbj|BAJ42873.1| flagellar hook-associated protein FlgK [Escherichia coli DH1] gi|323937822|gb|EGB34086.1| flagellar hook-associated protein FlgK [Escherichia coli E1520] gi|331038424|gb|EGI10644.1| flagellar hook-associated protein FlgK [Escherichia coli H736] Length = 547 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|315296713|gb|EFU56008.1| flagellar hook-associated protein FlgK [Escherichia coli MS 16-3] Length = 547 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T S ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGSGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|260437430|ref|ZP_05791246.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] gi|292810062|gb|EFF69267.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] Length = 543 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 67/537 (12%), Positives = 159/537 (29%), Gaps = 63/537 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV 50 + ++ + NI N + K Y ++ + Sbjct: 4 TFFGLTIGSSGLFASNAAINTTAHNISNINTKGYTKQVSNQQAAESIRVYQSYGTVGTGT 63 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V++ + +D ++ GQ LQ++ L E D+ N T L + Sbjct: 64 AVISIDQLRSSYYDTKYRHANTNCGQYNSLQNYTTLVEDYL-DEFNLNGFTKEYQNLFSA 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + ++ + + ++ A+ + FNT + ++ A+ E++ ++++ ++ Sbjct: 123 INDLQRDPTSAVGRNQFLNYAQSICDYFNTLSTNFSIVQRQANDEVKTTVNSINTISEQI 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV----RNNNDMVVYTSDGTT 226 +N I + A+D DQR +L+ ++S I + + VY + Sbjct: 183 VSLNKQINVIEINGGHANDLRDQRALLVDELSGYINTTVSEKEIGNGATEFKVYVNGQEL 242 Query: 227 LFETVPRDINFEKMNS----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS- 281 + + E + + + N S+ G +KA + +RD Sbjct: 243 VDMYNCNKLLLETRETGKRRNASDLDGLYDITWNNGLGFNMYSSSLTGSLKAAIDVRDGC 302 Query: 282 ---------------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + ++ + + ++ + + V Sbjct: 303 NEAYEVLGMADKDGNYLKDADGKIINVQDITEAEYNGYVAAGYSKKMVTVGETRFNSSYK 362 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--------WNVKNLAGYPDLINHY 378 Q N + V+ K + + AG + Sbjct: 363 GIPYYQEEINKFIQKISDVFNETISGGNKRVTDKPVEDLFVSRYGDSYITAGNVTINQEI 422 Query: 379 CDSFNK------------------NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + +K + + N T + + + + Sbjct: 423 LNDVSKLPYSYDSTKGSANVDMVEELLAIKNKIVINNGTFESFLNSIVSVCSIDAGRVKT 482 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I + GV+ EE L+K + +YN+S+K+I ++ L+E Sbjct: 483 FQATYSNIKETIDNQRMSVSGVDEDEEGIDLVKFKNAYNLSSKVISVMQEIYDKLIE 539 >gi|26247222|ref|NP_753262.1| flagellar hook-associated protein FlgK [Escherichia coli CFT073] gi|227886560|ref|ZP_04004365.1| flagellar hook-associated protein FlgK [Escherichia coli 83972] gi|300974386|ref|ZP_07172598.1| flagellar hook-associated protein FlgK [Escherichia coli MS 45-1] gi|26107623|gb|AAN79822.1|AE016759_96 Flagellar hook-associated protein 1 [Escherichia coli CFT073] gi|227836764|gb|EEJ47230.1| flagellar hook-associated protein FlgK [Escherichia coli 83972] gi|300410629|gb|EFJ94167.1| flagellar hook-associated protein FlgK [Escherichia coli MS 45-1] gi|307553084|gb|ADN45859.1| flagellar hook-associated protein FlgK [Escherichia coli ABU 83972] gi|315291060|gb|EFU50423.1| flagellar hook-associated protein FlgK [Escherichia coli MS 153-1] Length = 547 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T I+ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|20086976|gb|AAM10736.1| flagella-associated protein K [Leptospira interrogans serovar lai] Length = 543 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 130/390 (33%), Gaps = 25/390 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + Q + NI NADNK+Y R+ T Sbjct: 3 STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + + N D + S + E + ++ + + Sbjct: 63 QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARIEYLYQLETVF-NEPNGTTLRTLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K S E + ++ V++ A + R++ ++R A++EIE + +L Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N+ I A +D D+RD LLQ++S ++ ++ + ++++V+ Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ S +D ++ + KG+++ L+++R V+ Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRGKVIR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +Q+D ++ ++ + +E + N + S N Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNGDGQNDVT 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 R+ + N D+ Sbjct: 355 AIFRVTGRNTVDPDRPIGINGTITFHQSDV 384 >gi|300922608|ref|ZP_07138708.1| flagellar hook-associated protein FlgK [Escherichia coli MS 182-1] gi|301328548|ref|ZP_07221609.1| flagellar hook-associated protein FlgK [Escherichia coli MS 78-1] gi|300421085|gb|EFK04396.1| flagellar hook-associated protein FlgK [Escherichia coli MS 182-1] gi|300844940|gb|EFK72700.1| flagellar hook-associated protein FlgK [Escherichia coli MS 78-1] Length = 547 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|209547529|ref|YP_002279447.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538773|gb|ACI58707.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 486 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 162/485 (33%), Positives = 259/485 (53%), Gaps = 8/485 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I NN QQ + + NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSGLNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S Q+ L + + + + Y SP+ Y+S + +L++++ + S Sbjct: 61 TALLAQYLQSNSKDSAQQTLVTGLESLKSLMGGNDYETSPSTYLSAFQQALQTFATSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A ++ + NT++ VQ IRADAD EI ++S+L LS+ N+A+K Sbjct: 121 TTAAQSAVTAARDLANSLNTASDGVQSIRADADAEIATQVSSLNTLLSQFETANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ LL++IS I+G++T VR+NNDM +YTSDGT LFETVPR + + Sbjct: 181 TATGADTSSALDEREKLLKQISSIVGVTTAVRDNNDMALYTSDGTVLFETVPRTVTYVPT 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y +E N ++IDGV + + +GS G ++ALLQ+RD + P FQ QLDE+A+ L+ Sbjct: 241 TTYVAGTEGNSVYIDGVALDAGEGSTTSASGGLQALLQLRDDIAPTFQAQLDEIAKSLVQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353 +FSE D + + IS + V + + LRD Sbjct: 301 AFSETDGSTSAPGLFVWTTASGTSGGTPSDSDDITGIASSISVNLAVVTSEGGDATKLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G++S N +G+ D ++ + K F AG++T +L++YA +SIGWLE+ Sbjct: 361 -GTISGITDLNSAGDSGFSDNLDALYTALTKQRSFSSDAGLSTTQSLMDYASSSIGWLEQ 419 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 RSD+ + + E+YSN GVNL EEL+ L+ +EQSY + K++ D+M + Sbjct: 420 YRSDATSASENTTAALSRSDEAYSNEAGVNLDEELTLLLDIEQSYKAATKILNVIDEMFK 479 Query: 474 TLLEG 478 +LL+ Sbjct: 480 SLLDI 484 >gi|297617147|ref|YP_003702306.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] gi|297144984|gb|ADI01741.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] Length = 487 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 48/493 (9%), Positives = 115/493 (23%), Gaps = 21/493 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52 ++ + + I NI N + Y + + +P Sbjct: 1 MMRSMYAGVSGLRTHQLRMDVIGNNIANVNTVGYKKSRAIFKDAFYQAIRGGSAPTGARG 60 Query: 53 VTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T + + A + + Sbjct: 61 GTNPQAIGLGVQLSSVDVIATPGSAQTTGKNTDLAIDGNGYFILESGGERYYTRAGAFDF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + ++S + + D + + + Sbjct: 121 DVLGNYVASGGLHVMGYMPSKDDSGNWITDSSGKR----KIDITTGLVPIDISALQSTEP 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 S + D+ + + D + FE Sbjct: 177 KATTLIRFSGNFDSTLEPEYVWDETSSSFVDNPDGADSKITSKEFYDTLGNKRVQYFKFE 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 V N + N T+ + N ++ K + L + ++ Sbjct: 237 KVMERDNVDIGNGETMNGSIWRVRASSDPDCPNPTASDSKSEDYYLFFDEKGKLIRAKHD 296 Query: 290 LDEMARVLIGSFSEKDPIAG--NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ I + Q I+ QY + Sbjct: 297 NGTTGASSSDWQEPDVTAMTFAATDDPSSQSITIHYVNNGVPTQQPITLNFSYLTQYNAT 356 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + K + ++ Y + N +A LL N Sbjct: 357 FTGWAEYQDGYTKGDLRSITIDQNGVILGVYSNGITDNLARVALAVFQNPAGLLAKGGNL 416 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + N S + + I V+L EE + +I ++ + ++++I Sbjct: 417 --FQVSNNSGDPKVGAPGEEAMGAILPGSLEMSNVDLSEEFTDMIVTQRGFQANSRIITT 474 Query: 468 TDKMLQTLLEGVK 480 +D+MLQ L+ + Sbjct: 475 SDEMLQELVNLKR 487 >gi|300902473|ref|ZP_07120455.1| flagellar hook-associated protein FlgK [Escherichia coli MS 84-1] gi|301304979|ref|ZP_07211081.1| flagellar hook-associated protein FlgK [Escherichia coli MS 124-1] gi|300405505|gb|EFJ89043.1| flagellar hook-associated protein FlgK [Escherichia coli MS 84-1] gi|300839697|gb|EFK67457.1| flagellar hook-associated protein FlgK [Escherichia coli MS 124-1] gi|315253883|gb|EFU33851.1| flagellar hook-associated protein FlgK [Escherichia coli MS 85-1] Length = 547 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + +A + + Sbjct: 299 GQLVLAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|239628960|ref|ZP_04671991.1| flagellar hook-protein FlgK [Clostridiales bacterium 1_7_47_FAA] gi|239519106|gb|EEQ58972.1| flagellar hook-protein FlgK [Clostridiales bacterium 1_7_47FAA] Length = 489 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 71/501 (14%), Positives = 158/501 (31%), Gaps = 44/501 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 A+ + + NI N + K Y R+ + Sbjct: 4 TFMGLETAKRGIMVNQKAIDIVGNNISNVNTKGYTRQRLDSVSVNVYGSSQFNYSSIPLA 63 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYIS 105 + V D S +G + E + +D + ++ Sbjct: 64 GQGVDAKGVAQIRNPYLDAKFREQYSDVGYFDQKAAILDQIEGIISDPEVEGTGIKSALT 123 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 L SL +S+N ++ V+ + V Q N +Q + + + + ++ Sbjct: 124 ALSQSLADFSQNPYQETNANIVMHAFKAVTQVLNEYDANLQTLMEQTKNDFSIAVQDINT 183 Query: 166 FLSELTVVNDAIKFKTASKHD-------AHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 L++L+ +N +I + + D +D LDQR+ +L +S + + + Sbjct: 184 KLNQLSELNKSIAHEIFANSDYDGVNYGPNDLLDQRNTILDDLSRYGSVQVTNLDGGGVQ 243 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 V +G + + +++ + + +G + G+ + Sbjct: 244 VKF-NGKVVVDVSGASYTNDQLMIGSDGTSLTW-NSNGKTANLGSGAIKGFTDMLTGNDS 301 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 S +P +QNQLD A+ L F+ K + P + + I Sbjct: 302 IMSGIPYYQNQLDNFAKTLADVFNNKV-----HADDPDFPDKYKELLSGDGNGNITAGNI 356 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 ++ ++ + S++ +++ DL N D G + Sbjct: 357 SISDKWAEDSSYI-------------IRDKNPDGDLDNTDILDMKAALEQDFNFGSGFSG 403 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 T E+ + L + S + + GV+L EE ++ ++Y Sbjct: 404 TFSEFITKTTNTLGSEIKTNSARMQASLSIAESVESERMGVSGVSLNEEGINMMTYNKAY 463 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 +L+ D+ L ++ + Sbjct: 464 QALGRLMTTMDEQLDMIINKM 484 >gi|225166310|ref|ZP_03727999.1| flagellar hook-associated protein FlgK [Opitutaceae bacterium TAV2] gi|224799447|gb|EEG17987.1| flagellar hook-associated protein FlgK [Opitutaceae bacterium TAV2] Length = 469 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 168/495 (33%), Gaps = 49/495 (9%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49 MS LLA + A N N S+ N +N++Y R+ + + Sbjct: 1 MSGLLASLSHASNALNAHSRAIEVTSNIFFNINNEDYSRQRVVYSSRGTVLTAHGVETLG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------NNSPTHY 103 + T + + DK + ++ ++ A + + + N + Sbjct: 61 IEARTVQQLRDALLDKQVTRETAKTASITAERAAYARVQTLLGETIDTSSDTRGNGLSAA 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +S +S ++ + + ++ +T++ NA +V T ++ + + D D I +I + Sbjct: 121 LSDTFNSFQALAASPTDQGEKQTLLANAAILVDRIRTLDADLAQAQTDLDDSINQDIGEV 180 Query: 164 RRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++T +N I + A D+R L+ +++ I T + + Sbjct: 181 QDLLAKITELNQQIARFEINDPGTALTLRDERQAALEDLAQNISFETRTSTAHPGQIDIY 240 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 T VP + T +P A+ G I L RD Sbjct: 241 THDTDGNEVP---LITAGSPPPATLTYDPATGTLSTDGGATTLALTGGTIHGSLAARDGA 297 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + ++ +D +AR LI S ++ + + Sbjct: 298 IKTLRDNIDTLARQLITSVNDAYNPDSDPGHDFFTGT----------------------- 334 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 G AG DLI + N F A I+ TL Sbjct: 335 ---GAGDIALAPGLTVATLRTTATGGAGDSDLITAVANLINTRFSTADGALIDG--TLTA 389 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + +++ + S + H + I E +T GV+L EE L+ +++Y S Sbjct: 390 HYTSAVSHFGQAVSSADTRHQSQYSIETLIREQRDSTSGVSLDEETINLVNYQRAYQASA 449 Query: 463 KLIMFTDKMLQTLLE 477 ++I D +L T++ Sbjct: 450 RVITILDDLLNTVVN 464 >gi|238751767|ref|ZP_04613255.1| hypothetical protein yrohd0001_35400 [Yersinia rohdei ATCC 43380] gi|238710038|gb|EEQ02268.1| hypothetical protein yrohd0001_35400 [Yersinia rohdei ATCC 43380] Length = 549 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 71/550 (12%), Positives = 163/550 (29%), Gaps = 80/550 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N A + + A +++ NI N Y R++ + T + VTV Sbjct: 1 MNTAMSGLSAAQYGLSTVSNNISNYQVAGYNRQNAIFTQNGGTLSSAGFIGNGVTVTGIN 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 E + L + + + + A+ +N+ + + +L++ Sbjct: 61 REYNSFITNQLRTAQTQSSGLTTYYQQVSQIDNLLAN--SSNNLSTTMQAFFSNLQNLVS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N +D KTV+ AE +V F + + ++ + +++I ++ + + ++ +ND Sbjct: 119 NADDDAARKTVLGKAEGLVNQFQNADQYLRDMDTGVNQKITESVAKINNYAEQIAGLNDQ 178 Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I +S + + LDQRD L+ ++++I+G++ ++ + V ++G L + Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTMSQQDGDAYNVSFANGLPLVQGASSYK 238 Query: 236 NFEKMNSYTVTS--------ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +S T + +D +++ K + +AL R+ + + Sbjct: 239 VEAIPSSSDATRLAVGYKYGSGTVLEVDESRLTTGSLGGTLKFRSEALDNARNQLGQLAL 298 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-- 345 D F N N + K+ + + Sbjct: 299 VMADSFNTQHKAGFDANGEDGTNFFNFADPVVVKNTKNEGDAVLTVAYTNTSKVQASDYS 358 Query: 346 ----------------------------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 N + L G + Sbjct: 359 VEFDGTDWQVTRLSDKAKVSADVVKDTSGNVTGLNFDGVAVSINNGTTGAQIKDKFTVKT 418 Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408 + + + + T + Sbjct: 419 VSNVAANLEVAISDSSKIAAAGKKDGGESDNVNAQALLDLQTKKLVGGKATFSGAYAGLV 478 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + + ++ + GVNL EE L + +Q Y + ++I Sbjct: 479 STVGNQTSTAKVNSTAKASIVTQLTAEQQSVSGVNLDEEYGDLQRFQQYYLANAQVIQTA 538 Query: 469 DKMLQTLLEG 478 + LL+ Sbjct: 539 STLFNALLDL 548 >gi|218704490|ref|YP_002412009.1| flagellar hook-associated protein FlgK [Escherichia coli UMN026] gi|293404366|ref|ZP_06648360.1| flgK [Escherichia coli FVEC1412] gi|298380146|ref|ZP_06989751.1| flagellar hook-associated protein 1 [Escherichia coli FVEC1302] gi|300899601|ref|ZP_07117840.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1] gi|218431587|emb|CAR12466.1| flagellar hook-filament junction protein 1 [Escherichia coli UMN026] gi|291428952|gb|EFF01977.1| flgK [Escherichia coli FVEC1412] gi|298279844|gb|EFI21352.1| flagellar hook-associated protein 1 [Escherichia coli FVEC1302] gi|300356872|gb|EFJ72742.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1] Length = 547 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ T V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMTQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTLTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|320179217|gb|EFW54175.1| Flagellar hook-associated protein FlgK [Shigella boydii ATCC 9905] gi|332089154|gb|EGI94263.1| flagellar hook-associated protein FlgK [Shigella boydii 5216-82] Length = 547 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAKDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC- 379 + Q + N + P + + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 380 -----------------------------DSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 TIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|296534169|ref|ZP_06896661.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] gi|296265505|gb|EFH11638.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] Length = 500 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 73/500 (14%), Positives = 168/500 (33%), Gaps = 20/500 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSEN 59 MSL + A + ++Q +NI NAD Y R+ + V + Sbjct: 1 MSLSSALLTATSGLRLTTRQLEQSAQNIANADTAGYTRKTVSGEAVTTGGVRTGEAQRAV 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 SA L + + + D IS L D+ + + + + Sbjct: 61 DTALRNQALKARSAEAGASLANATLSPLAGLQGDTSDGRDTAGLISALNDAFTALAASPA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + V+ AE++ NT++ + R + ++ + ++ ++ I+ Sbjct: 121 DSSAMSGVLRAAEDIASQLNTASEAIGTTRQAVQDGLVADVDAANGLIRQIGALDKQIRA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + A+ DA DQRD + ++S+ +G+ + + + + + G+ L + Sbjct: 181 EAAAGRDAAALKDQRDTAIGQLSDYLGVKSTEGADGGVTLTLASGSVLPLDAESGPLGLE 240 Query: 240 MNSYTVTS--ESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARV 296 + T S + + G+ ++ + G++ A +RD +P Q +LD+ A Sbjct: 241 RATVTPGSYHGTPAGTLPGLTLNGQAVNGAALGGRLGAGFTLRDQTLPTMQAELDQTAAT 300 Query: 297 LIGSFSEK------DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 L G E+ D A ++ + + Sbjct: 301 LAGRLDEQGLRLFTDSDGSAPPAAGTAAGAAQTVGFAARMTVNAAVAEAPRLLRDGTHAT 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL--------- 401 + + L+ + P +G+ TL Sbjct: 361 ADFTPNPAGGPSGFTTLLSRVSQYSFGAEKAAGVPHTAIPTSGLGPGGTLSSNFAAPQRI 420 Query: 402 -EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 +YA + +G + + + +++ + GV+ EL+ ++ ++ +Y+ Sbjct: 421 IDYAASVVGSQAGTIAAAESAAEGATTQRSYLDGLVQKSEGVDTDAELANMVALQNAYSA 480 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 + +++ M LL+ V+ Sbjct: 481 NARVMSAVQSMWDALLDAVR 500 >gi|260867445|ref|YP_003233847.1| flagellar hook-filament junction protein FlgK [Escherichia coli O111:H- str. 11128] gi|257763801|dbj|BAI35296.1| flagellar hook-filament junction protein FlgK [Escherichia coli O111:H- str. 11128] Length = 547 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGALGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|260854565|ref|YP_003228456.1| flagellar hook-filament junction protein FlgK [Escherichia coli O26:H11 str. 11368] gi|257753214|dbj|BAI24716.1| flagellar hook-filament junction protein FlgK [Escherichia coli O26:H11 str. 11368] gi|323156889|gb|EFZ43023.1| flagellar hook-associated protein FlgK [Escherichia coli EPECa14] Length = 547 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + +A + + Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|332284025|ref|YP_004415936.1| flagellar hook-associated protein FlgK [Pusillimonas sp. T7-7] gi|330427978|gb|AEC19312.1| flagellar hook-associated protein FlgK [Pusillimonas sp. T7-7] Length = 553 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 73/550 (13%), Positives = 159/550 (28%), Gaps = 82/550 (14%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N N A + + NI NA + Y R+ ++ + V VT + Sbjct: 5 NLGLTGLNAAQNRLQTAGHNINNAATEGYNRQSVLSATAGASATSAGYIGRGVQAVTVQR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + L + + S + AD T + K D +++ + Sbjct: 65 AYDSFLFRQLTSAQTTGASLAAYGSEITQINNLFAD--RTVGITPALQKFFDGIQAVASA 122 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ + ++ A +V N + + R + + +I ++ + + + +N+ I Sbjct: 123 PADSAARQELLGRASSLVGQINDNNAFLDSQRGNINTQITTVVTQINSYAERIRDLNNQI 182 Query: 178 KFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ +D LDQRD L+ ++ +++G+ I + + + + +G L Sbjct: 183 TTARATASQHEPNDLLDQRDQLVAELGQLVGVKVIEQ-DGNFNLTVGNGQILLGGDTVFP 241 Query: 236 NFEKMNSYTVTSESNPIFI---DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ GVV S++ G + LL R + QN+L Sbjct: 242 LHAQPSADDPARTVVAYTAPVNGGVVTVELADSSIKGGALGGLLDYRREALDSVQNKLGR 301 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIA-------------------------------- 320 +A L + + + V G Sbjct: 302 LAVGLATAINAVHEKGEDLNGVGGGDFFTLGEITPMPGAGNSGSGQLSVQFTDAKQLTDQ 361 Query: 321 ----------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 + L N +++ LR S + + Sbjct: 362 DYRIERSAGGYTVTSLPNGTVSTFADSGDPANPTVIEVDGLRFDVSGGTPDTGDSWLVQP 421 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNV----------------------TLLEYARNSI 408 + + + + +L E + Sbjct: 422 TRAAAANLSLAIDDPAGIAVATPGSGASNGDVGLELAGLQTAKVLGNGSMSLNEAFSQIV 481 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + GVNL EE L + ++ + ++KLI + Sbjct: 482 NHVGVMTQQNSTSAKAQATLIQQNYAAQQAVSGVNLNEEYVRLDQYQEQFRAASKLIDVS 541 Query: 469 DKMLQTLLEG 478 + TLL Sbjct: 542 SSLFDTLLGL 551 >gi|323490135|ref|ZP_08095355.1| flagellar hook-associated protein FlgK [Planococcus donghaensis MPA1U2] gi|323396183|gb|EGA89009.1| flagellar hook-associated protein FlgK [Planococcus donghaensis MPA1U2] Length = 422 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 62/494 (12%), Positives = 156/494 (31%), Gaps = 92/494 (18%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + ++ +NI N + K Y R+ ++ S Sbjct: 3 STFHGLELGKRGLSVGQASLSTTGQNIANVNTKGYSRQQVNSSASPSLSVWTAQGANTGQ 62 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 VT+ + D+ HS +GQ + Q+ E + ++ ++ + ++ Sbjct: 63 LGTGVTIDSITRVRDRFLDQQFRDHSETLGQWQAKQTTLDRLETI-VNEPSDSGLSSAMN 121 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 L + + + V + A+ V+ + + + ++++ ++ + ++ Sbjct: 122 SLNSAWQDLANEPDSLSAQAIVKERAQGFVEVAQSMNKSMTNLKSELTQQTQDAVAEANG 181 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 +L ++ +N +I + + ++D D+RD L++ +S+++ + +++ + S Sbjct: 182 YLKQIAELNKSIVR---NGNQSNDLKDKRDALVEDLSKLMAVKVDEKSDGSYSISLSSNK 238 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + + I +D V GK+ L D Sbjct: 239 ---------------QALVAGEKVSEIDVDSVNADPKSY----GGKLAGLGASMD-SAVH 278 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 +Q++L + + + + + Sbjct: 279 YQDKLISVVKNFAQANTMTKTGGADQ---------------------------------- 304 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + +L +Y K + E Sbjct: 305 --------------ALFIGDADNFNLSELKVNYAAKPLKQPAAPDKPSEDAQSYFRELVS 350 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + S + Q + GV+L EE++ L+K + SYN + +L+ Sbjct: 351 ELGAESQAAISSVTNHEATLQAT----ENRRQSVTGVSLDEEMANLVKYQHSYNAAARLV 406 Query: 466 MFTDKMLQTLLEGV 479 TD+ML T++ + Sbjct: 407 SMTDQMLDTIINRM 420 >gi|45659268|ref|YP_003354.1| flagellar hook-associated protein FlgK [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602514|gb|AAS71991.1| flagellar hook-associated protein 1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 636 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 135/412 (32%), Gaps = 30/412 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + Q + NI NADNK+Y R+ T Sbjct: 3 STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + + N D + S + E + ++ + + Sbjct: 63 QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLETVF-NEPNGTTLRTLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K S E + ++ V++ A + R++ ++R A++EIE + +L Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N+ I A +D D+RD LLQ++S ++ ++ + ++++V+ Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ S +D ++ + KG+++ L+++RD V+ Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRDKVIR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +Q+D ++ ++ + +E + N + S Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNG-----DG 349 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 +++ + + + + G + +N Sbjct: 350 QNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDAKESPILIPYSSNDTLNG 401 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 50/424 (11%), Positives = 126/424 (29%), Gaps = 13/424 (3%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D +L SS + + L + + + I + + + +L Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLFWSAT 271 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180 G V+ + + +++ D + + + +N Sbjct: 272 GDPVLLRKGRLQGLIEVRDKVIREKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFN 331 Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + D ++ I ++ + D + + T ++ ++ Sbjct: 332 IRSLSINTFGEYDSNGDGQNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDAKESPILI 391 Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 S T I+ GVV N + + A + + ++ Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHIEDSGDLLV 451 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS--ETICVNPQYRSNPSFLRD 353 + G P G ++ D L V +N S + Sbjct: 452 GMTGILMASGPSGAYDYRRLGEINKLQVRSEDVTLTPHFHPASHFRVADSIANNVSNIAA 511 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + G+ D N + + + + ++ + T ++ I L Sbjct: 512 ARGKDVGGTGDYNSPGGHKDGRNALMVA---SALRNSPVMVDYSKTTDDFYNTLISKLGT 568 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 ++ + + + +GVNL EE++ +++ + +YN S K+I +++L Sbjct: 569 EAREAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHAYNASAKMINTMNEILD 628 Query: 474 TLLE 477 T++ Sbjct: 629 TIIN 632 >gi|307546962|ref|YP_003899441.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM 2581] gi|307218986|emb|CBV44256.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM 2581] Length = 555 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 57/408 (13%), Positives = 131/408 (32%), Gaps = 8/408 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSE 58 MS+ + + N A ++ NI N Y R + + S V V + + Sbjct: 1 MSIFS---TGLSGLNAAQNALSTTSNNISNVFTPGYNREVAILGESASGGGVQVNDIQRQ 57 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 L+A +S + + + AD+ + S+E + + Sbjct: 58 FDRYVADQLNAATSESSALETYGNQVEQIDSLLADE--QAGLAPLMQDFFSSMEDLASSP 115 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++ + V+ +A+ + F + +Q ++ + +I E++ + +L +N I Sbjct: 116 ADPAARQGVLGSADTLSAQFRSFDGYLQDMQEGINGQIRDEVTQINNATEQLAGINREIS 175 Query: 179 FKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A + L+QRD L+ +++E +G+ V++ V +G L Sbjct: 176 LARARDGEAPNGLLNQRDQLVHELNERLGVRLDVQDGKAYNVSLPNGQPLVAGSRSFELR 235 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + G + + +AV G + L+ R + QNQ+ +MA L Sbjct: 236 AIDSPDDPQRTVLGYRNSGGNIVAIDENAVTGGSLGGLMSFRAETLDKTQNQIGQMAVSL 295 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 +F+ + + + G + + S Sbjct: 296 ATAFNAQHAEGVDLQGEAGGDFFSIGQPRTYAAADNPGGAEITQASFDSENIDRLRASDY 355 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + + + + + G + + L + Sbjct: 356 TVRVTDSESDPPAFEVRRRDTGQVLDAAEVTFNDPGNDGSDATLSFGG 403 >gi|33596145|ref|NP_883788.1| flagellar hook-associated protein FlgK [Bordetella parapertussis 12822] gi|33601547|ref|NP_889107.1| flagellar hook-associated protein FlgK [Bordetella bronchiseptica RB50] gi|33573148|emb|CAE36796.1| flagellar hook-associated protein 1 [Bordetella parapertussis] gi|33575983|emb|CAE33062.1| flagellar hook-associated protein 1 [Bordetella bronchiseptica RB50] Length = 548 Score = 164 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 80/549 (14%), Positives = 160/549 (29%), Gaps = 78/549 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++N A N + + NI NA Y R+ +T+ + V V T Sbjct: 2 NLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + Q + + + D T ++ L S + Sbjct: 62 VTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGD--RTVGITPALAGLFTSTNAA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + +I A +V NT+ +E++ R + +I + + +L + +N Sbjct: 120 ATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQISTTVEQVNSYLERINDLN 179 Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I H +D LDQRD + +++++ GI + + + G TL Sbjct: 180 KQIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDTF-NITLQSGQTLLSGTTV 238 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + ++ S V G++ LL R + Q+Q Sbjct: 239 YPLQAVPSASDPKRLAVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQ 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A L +F+ + + + PG + + S + ++ Sbjct: 299 LGQLAIGLAMAFNAQHREGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAI 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------------------------- 372 + V L+ Sbjct: 359 RASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLTLTGSGTPAAGDAWTLQPA 418 Query: 373 -----DLINHYCDSFNKNFIFDPVAGINTNVTLLEY--------------ARNSIGWLEK 413 DL D + N N L L Sbjct: 419 RDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVN 478 Query: 414 NRSDSHDLHMKSQVVFNHISESY----SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 N + ++ + + GVNL EE L ++ Y S K++ Sbjct: 479 NVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVAS 538 Query: 470 KMLQTLLEG 478 + TLL Sbjct: 539 TVFDTLLGL 547 >gi|85706143|ref|ZP_01037238.1| flagellar hook-associated protein [Roseovarius sp. 217] gi|85669307|gb|EAQ24173.1| flagellar hook-associated protein [Roseovarius sp. 217] Length = 459 Score = 164 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 163/463 (35%), Gaps = 18/463 (3%) Query: 25 VRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS 82 N+ NA + + R+ T + V V + +A + + Sbjct: 2 SGNLANALTEGFAPREIALTSTRDSRGVRVEAVSRQIDLGLLSDRRIADAAQAASEVGVA 61 Query: 83 FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 F + E + S T + L +L + S + + V+ A+ + + N +A Sbjct: 62 FASAVEQVIGTPESAQSLTGRFAALEAALVTASTRPEDSNRLQAVLREAQALGAHLNDAA 121 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 E+ ++R+ AD++I + L L ++ +N I D DQR ++ ++ Sbjct: 122 TEIARLRSAADRDIAETVVALNSGLQQVVALNIQIATNLTRGTDTATLEDQRQSVIDSLA 181 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES-----NPIFIDGV 257 EI+ + + R+N + + T+ G L + ++F++ + I IDG Sbjct: 182 EILPLRQVPRDNGAVALVTTAGGLLLDGRAVTLSFDRAPMVAAHMTLENGLLSGIAIDGT 241 Query: 258 VVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE---KDPIAGNSEN 313 V + + G++ AL IRD LD +AR L+ F + Sbjct: 242 AVPTGSDRGPLQGGRLGALFDIRDRTSVDTTADLDAIARDLVERFQQSGLDPTRGAGDAG 301 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + ++ + + I V+P + +RD G Sbjct: 302 LFTDAGDLFEAQNESGIARRIGVNQAVDPLRGGDLFRIRD------GVAAQSAGPPGDGS 355 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 L+ + A + + +A I L + R + + + Sbjct: 356 LLVTLTRALTDTSPLSSGALGSGARSAAGHAATLISGLSQARVAAEQVQSFATGQATEFR 415 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 GV+ EL L+ VEQ++ + ++I D ML TLL Sbjct: 416 TLELAN-GVDSDAELQRLLLVEQAFGANARMIQTIDDMLDTLL 457 >gi|302669846|ref|YP_003829806.1| flagellar hook-associated protein FlgK1 [Butyrivibrio proteoclasticus B316] gi|302394319|gb|ADL33224.1| flagellar hook-associated protein FlgK1 [Butyrivibrio proteoclasticus B316] Length = 557 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 65/554 (11%), Positives = 146/554 (26%), Gaps = 78/554 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MSL+A Q+ + + N+ N D + Y R+ Sbjct: 1 MSLMANLYVGQSGLQTSQNALNTTAHNMANVDTEGYTRQQVSQGTRAYQTLERRYDTIAP 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + D + E + Sbjct: 61 KQIGTGVNYNHCKQVRSEFLDLSYRQEKGRYAFYDVSTKALEEIEDQLQ-EMNGTEFADS 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 ++ L S++ +K+ + ++ A E + + + + + D + + + + Sbjct: 120 LNNLWVSVQELAKDPCSAVNQSAMVTRANEFLTRAKSVYNGLVSYQENLDSTVSVMVKEI 179 Query: 164 RRFLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + +N+ I + + K + A+D D+R+ LL K+ E I ++ V Sbjct: 180 NDIGDRIRKINEDIVYIESGKQEKANDLRDERNGLLDKLGEYGKIEYHEDIFGNVSVLFE 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIF---------IDGVVVSSNQGSAVPKGKIK 273 + + I + + +++ G + Sbjct: 240 GSSFVTTDHVNHIGLITTEHVEPPESPVGYATPYWEYAAKTEVDAEGNKIITSIAGGHLY 299 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L + +L + + I + I ++ + Q Sbjct: 300 NLQTTISTTTNTDIGKLKAVLLARGDHNATYHDIVEDENYYNSNIAQSVIMNVQAEFDQM 359 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWN-------------------VKNLAGYPDL 374 I + + N + F + K Sbjct: 360 IHAIMTKINEVMINAESNPATLDKTVGFPADFALFVEANPTDQLTYEISEDKPAGSINTG 419 Query: 375 INHYCDSFNKNFIFDP-------------------------------VAGINTNVTLLEY 403 N I DP ++T + + Y Sbjct: 420 FTIMNTQVNPKLIQDPTLFTFRMIDGGEDTATMTALKEAFTKEEYILNPNVSTRNSFVTY 479 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + + + +S VGV+ EEL F+I + +YN S++ Sbjct: 480 YNSLVSQVANSGDVYKSISQAQEETVSAVSSGREQIVGVSSDEELEFMIMFQNAYNASSR 539 Query: 464 LIMFTDKMLQTLLE 477 I +ML+ L+ Sbjct: 540 YINVVSEMLEHLVS 553 >gi|149375027|ref|ZP_01892800.1| Flagellar hook-associated protein [Marinobacter algicola DG893] gi|149360916|gb|EDM49367.1| Flagellar hook-associated protein [Marinobacter algicola DG893] Length = 682 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 62/370 (16%), Positives = 131/370 (35%), Gaps = 16/370 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + N + NI NA+ Y R++ V++ Sbjct: 1 MAGLINIGLTGILGHQAALNTTGNNITNANTPGYSRQEVQFETQSAQRTGAGSVGTGVSI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + SS G+Q L S + + + + ++ ++ SL+ Sbjct: 61 TNIRRLANEYLTQQVREDSSLFGEQEALNSELSRLDNLLGGET--TGLSNALNNFFASLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + V+ A++VV F +E + R ++E + + L + Sbjct: 119 NAAEDPASLPQRQLVLSEAQQVVNRFEALNQEFIQQRESVKTQMEQGVKDANTLLKSIAE 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N AI A + ++ LD+RD L+++SE++ IS + + + V +G L Sbjct: 179 LNLAISESPGLAQGREPNELLDKRDEKLRELSELVNISVVQAQGSQVNVSLRNGQALVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + N+ T + G + N S V GK+ L + + +L Sbjct: 239 DRAAQLGTRDNAEDPTRLEFTLTTGGRTL--NVDSQVNGGKLGGLRRFESEALQPAFAEL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L + + + I + E G I + + I+ T P+ Sbjct: 297 GRVAIALSETLNHQHEIGMDLEGDLGGLFFSDINSQAAQRGRVIANTNNGAPRDAQLAVE 356 Query: 351 LRDGGSVSKK 360 + D + Sbjct: 357 IIDSSQLPAG 366 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/462 (9%), Positives = 110/462 (23%), Gaps = 29/462 (6%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + V + + A E + ++ Sbjct: 221 QGSQVNVSLRNGQALVVGDRAAQLGTRDNAEDPTRLEFTLTTGGRTLNVDSQVNGGKLGG 280 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFN-------TSAREVQKIRADADKEIELEI 160 ES + + LG+ I +E + + I Sbjct: 281 LRRFESEALQPAFAELGRVAIALSETLNHQHEIGMDLEGDLGGLFFSDINSQAAQRGRVI 340 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 +N + I + + D ++ + + + V Sbjct: 341 ANTNNGAPRDAQLAVEIIDSSQLPAGSWSLRFGGDGRNFELVDRATGEVVNQGRLPDPVQ 400 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESN-------------------PIFIDGVVVSS 261 + F F +S+ + N P+ +G ++ Sbjct: 401 SEISMPGFNIRIEGGTFNAGDSFLIEPTRNAAANIGLEVNREEDLAFASPVRAEGSANNT 460 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLD---EMARVLIGSFSEKDPIAGNSENVPGLF 318 + + +S++ F+ + + ++ L Sbjct: 461 GDATINQGKMLDVRDPFTNSLLSNFRQDGQLDPPLDIQFRDDGGQLVYDIVDANTNTVLQ 520 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 D + Q RS F + ++ + ++ Sbjct: 521 AGDAAAVPPVNVFQTGQSNKLFTEDPRSPDYFGFQFEISGNPRPGDSFSINYNTNGVSDN 580 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 ++ + N + + E + + S + + + Sbjct: 581 RNAEFLAALGTENTLNNGSQSFAEGYAGLVEDIGVKTRQSQLDKDAGSTLLEQSTNQRES 640 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVNL EE LI+ + +YN S +++ + TLL+ + Sbjct: 641 VSGVNLDEEAGKLIQYQAAYNASAQVVSVAQDLFNTLLQSFR 682 >gi|253681928|ref|ZP_04862725.1| flagellar hook-associated protein FlgK [Clostridium botulinum D str. 1873] gi|253561640|gb|EES91092.1| flagellar hook-associated protein FlgK [Clostridium botulinum D str. 1873] Length = 686 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 19/237 (8%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L A N + NI N++ + Y R+ + + Sbjct: 1 MSGLFATLNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRAIMETTRPFGMPSMNCQIG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + D + +S +GQ + + E + ++ + + Sbjct: 61 PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGISS 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I K D+ + +K+ + A + N + ++ K++ +A + I+ + Sbjct: 120 LIGKFFDAWQEVAKHPEGSNARTVLASQASALANELNHNYGQLTKVKENAQESIKQATFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + L + +N I S + +D +D+RD+LL ++S+ I + + Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSKKFNIVVERDKFESINL 236 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 96/290 (33%), Gaps = 4/290 (1%) Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 D ++ + + V + D + + G T + + T P Sbjct: 396 DEYKGELKGFMTVQQDVDDYIDQMNKLAKGITFSVNTMHSGVSDLGDGKTPLVVQEPTNN 455 Query: 255 DGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 V ++ G++ +I D +F+ + ++ S E + Sbjct: 456 GKDVEKADYMPFFVNGEVADKEYEIVDGKKVLFKEKSINKLGKVLNSEIEITAANISINK 515 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + +++ S+ Q + + K K + Sbjct: 516 QIVDDVMQIKTRINDDKFGLASKNTKDGEQDGARALAIAQLRDKLLKIQNITKGMTRKEF 575 Query: 374 LINHYCDSF---NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + + ++ + D + G + + Y ++++ L + + Sbjct: 576 IQQNGENNKLTKDITLGLDTIKGDINGMKIDSYFKDTVDKLGVEEQQAKRTVKNQGSLLK 635 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S+ +T GV+L EE++ +++ + +Y + K+I TD++L ++ G+K Sbjct: 636 DFSQRRESTSGVSLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 685 >gi|33592485|ref|NP_880129.1| flagellar hook-associated protein FlgK [Bordetella pertussis Tohama I] gi|33572131|emb|CAE41673.1| flagellar hook-associated protein 1 [Bordetella pertussis Tohama I] gi|332381902|gb|AEE66749.1| flagellar hook-associated protein FlgK [Bordetella pertussis CS] Length = 548 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 80/549 (14%), Positives = 159/549 (28%), Gaps = 78/549 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++N A N + + NI NA Y R+ +T+ + V V T Sbjct: 2 NLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + Q + + + D T ++ L S + Sbjct: 62 VTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGD--RTVGITPALAGLFTSTNAA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + +I A +V NT+ +E++ R + +I + +L + +N Sbjct: 120 ATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQISTTVEQANSYLERINDLN 179 Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I H +D LDQRD + +++++ GI + + + G TL Sbjct: 180 KKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAF-NITLQSGQTLLSGTTV 238 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + ++ S V G++ LL R + Q+Q Sbjct: 239 YPLQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQ 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A L +F+ + + + PG + + S + ++ Sbjct: 299 LGQLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAI 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------------------------- 372 + V L+ Sbjct: 359 RASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLTLTGSGTPAAGDAWTLQPA 418 Query: 373 -----DLINHYCDSFNKNFIFDPVAGINTNVTLLEY--------------ARNSIGWLEK 413 DL D + N N L L Sbjct: 419 RDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVN 478 Query: 414 NRSDSHDLHMKSQVVFNHISESY----SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 N + ++ + + GVNL EE L ++ Y S K++ Sbjct: 479 NVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVAS 538 Query: 470 KMLQTLLEG 478 + TLL Sbjct: 539 TVFDTLLGL 547 >gi|269976274|ref|ZP_06183270.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] gi|269935603|gb|EEZ92141.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] Length = 472 Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 47/482 (9%), Positives = 110/482 (22%), Gaps = 14/482 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61 +L + + NI N + + T + V N+ Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGAAPRLNER 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 Q L +++ + N D K Sbjct: 61 --------GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQ 112 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + Q VQ AD +I L K Sbjct: 113 VYTRNGSFGLDAQGQVVAADGSFVQGWMADKKGKISASGQTQNLVLPLTQTFEANPTKKI 172 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + D K ++ + + L + D + Sbjct: 173 TYGGNLPADKVWIDPSPNKRADEDNAFMVTQTLTVYDDKGDPHNVLLKFERSDSKAPGVK 232 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKG---KIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + + + + + G K A + E L Sbjct: 233 PKWKVMAYDAEAYKHLTKKAERDTEITAGDDQKGAAYKLKYNGKEATSFEIEFETDGTLK 292 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + D I+ + Y S + + Sbjct: 293 EDTKKLLKNVEFKVMQAKVTADKKLAVKDGVAANPITMDLSALTGYAGVNSAQYETIDGN 352 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + + A + + L + + ++E S Sbjct: 353 SAGTLTGFGVEADGTIRGTFSNGDTRALAKIATASFSNPLGLEKAGASY--FVESGNSGQ 410 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ V+L E + LI ++ + + ++I +D++LQ L+ Sbjct: 411 PQIGEPGSGTRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELVSM 470 Query: 479 VK 480 + Sbjct: 471 KR 472 >gi|300950179|ref|ZP_07164123.1| flagellar hook-associated protein FlgK [Escherichia coli MS 116-1] gi|300450464|gb|EFK14084.1| flagellar hook-associated protein FlgK [Escherichia coli MS 116-1] Length = 547 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 65/548 (11%), Positives = 160/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52 + ++ N A + N A + NI + + Y R+ T+ + V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMEQANSTLGAGGWGGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T ++ N N + G++ +Q + + Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 L D+ ++ ++ + K +A + + Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + N + P + + + D Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410 + + + + + + + Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + V +S + GVNL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|297183504|gb|ADI19634.1| flagellar hook protein flge [uncultured delta proteobacterium HF0770_45N15] Length = 494 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 41/504 (8%), Positives = 116/504 (23%), Gaps = 34/504 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M+LL + + NI N + + R Sbjct: 1 MALLGSLQTGASGVKTYGKAMQVTGNNISNVNTFGFKRNIIAFEDLLGNDYPQGRSFTKV 60 Query: 49 --NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + + + L + + + + +N + Sbjct: 61 SNGVKIGSVEM---EVSQGALESTQLTTDLAIAGGGYFTVID-----PSTSNEYFTRNGQ 112 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + + +D + + S + + + + ++ Sbjct: 113 MSYDKDGFLATPRGYRVQALEVDRITKESKGLPGSLKILGLVDPPQPSGDGRNNTGMKIA 172 Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVR--NNNDMVVYTSD 223 + + D + + S + R + V Sbjct: 173 ANLDANAVVKDVPFDPTNVRDTMYNFATSTTVYDQYGNTHTASVVFRKRPDLPEQVDAGT 232 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV------VSSNQGSAVPKGKIKALLQ 277 G + + R+ + + P + V + A G +A Sbjct: 233 GLPIPGSGVRNQWEYYLLFDGASLGQVPGTMLAVGGGFMQFTGDGKLIAATSGSFEAQPG 292 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISE 336 + + + A P + + Sbjct: 293 GVGPDGQPLPGGPPRLIPQPVDPETGVPQFAVPFNGEDPIVLGLHLGDGFNPDDPTDPRT 352 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + Q+ + + + + + + +N+ + + Sbjct: 353 GLDGITQFAGKYNVVEASADGNGSGNLESIFVEADGTVTGVFDSGYNRPIGRIILTKFDN 412 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + N + +E S F I V+L E +I+ ++ Sbjct: 413 AGKLAQLGDNLL--VETLSSGKKVTGEPGTAGFGEIRSQMLEQSNVDLSLEFVKMIESQR 470 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 ++ + K + +D+M+ L+ + Sbjct: 471 AFQANAKTVTTSDEMIVDLVNMKR 494 >gi|302391042|ref|YP_003826862.1| flagellar hook-associated protein FlgK [Acetohalobium arabaticum DSM 5501] gi|302203119|gb|ADL11797.1| flagellar hook-associated protein FlgK [Acetohalobium arabaticum DSM 5501] Length = 801 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 153/452 (33%), Gaps = 21/452 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S + + + NI NA+ + Y R++ + + Sbjct: 3 STFSGIELGKRALQVQRKSLDVTGHNISNANTEGYSRQEAIHATNRPHTIQHGTGAGQVG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + + D + +SA G+ + E++ ++ + S + + + Sbjct: 63 TGVKIDEIKRVRDEFIDGQIREETSAQGKWEVKNDALEQIELIF-NEPSDKSLRNSMDEF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 +SL+ + N + + TV A + FN +++ R + +++ +++++ + Sbjct: 122 WNSLQELNNNPESEAVRATVRQRALSLTDTFNHLDDQLRDYRTSLNNQLKTKVNDINSYG 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + +N I + + +D D+RD+L++K+S+I + T +N + V + + Sbjct: 182 QRIADLNAQISRIESMDQNPNDLRDKRDLLVEKLSKITSVQTNEMDNGAVTVNIEGQSLV 241 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + + S + ++ +N+ G+++ LL+ RD VP + Sbjct: 242 WQDEVSKLKTVETASSDSKFDK---TVEVRWDKTNEEVNFTNGEMQGLLEARDEEVPKYV 298 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD MA+ L +F+++ + + + ++ + + Sbjct: 299 EQLDNMAQELAATFNDQHHQGY---GLSDTEMTELESNVQATPSDPLDGATGKFNVVVNG 355 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + G + + D+ + + T ++ S Sbjct: 356 SVEDSVTVNSGDGLNTIANKIDGVAKVDSFTVDNNGDGAADTLKVHSSLSGTAIDLVNTS 415 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + + S Sbjct: 416 DTEAGAVNVVQKLGLKGTGAGRDFFTGKTSEV 447 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 42/430 (9%), Positives = 125/430 (29%), Gaps = 4/430 (0%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + D + + L S + + + Sbjct: 375 KIDGVAKVDSFTVDNNGDGAADTLKVHSSLSGTAIDLVNTSDTEAGAVNVVQKLGLKGTG 434 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + + I+ + + I ++ Sbjct: 435 A-GRDFFTGKTSEVASGSTAGKADIVFVVDNTSSMDSIQEEVKDNLSNFIDTIKSKGVND 493 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + + + + + + + + + + + T+ Sbjct: 494 IQMGVIEYRDSNIIPKDFSGSNWTSDPDKVKATLANLDSSSGGSEEYA-MQAVKDTINNY 552 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 R V + +G + S+ + + ++ + + ++ Sbjct: 553 DFRSNEAGLQVKNAVLVTNEDADDEGQLSSTIDNANIEGLQVHGVYHEGTDIYGEDTSEF 612 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D + G + + S+ + A G ++ I+ + + Sbjct: 613 DNLTSSTGGESVDLSDSSWGSKLANVVGGAIGSAASSSEDNGEITAKNIDLAKAIKSEGG 672 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L + +K + + G D ++ + + + + +Y ++I Sbjct: 673 LAKIAAATKA--SDNADSNGVNDYAGDGGNALALSQVDNKKVFSSGTADFGDYYESNISK 730 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L + + + +V+ ++ + + GV+L EE+S +IK +QSY + K D+ Sbjct: 731 LGVDSQRAGRMVKNQEVLTKNLKQQRDSISGVSLDEEMSKMIKYQQSYTAAAKFTSTMDE 790 Query: 471 MLQTLLEGVK 480 +L TL+ G+K Sbjct: 791 ILNTLVNGIK 800 >gi|311031940|ref|ZP_07710030.1| flagellar hook-associated protein FlgK [Bacillus sp. m3-13] Length = 620 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 61/478 (12%), Positives = 142/478 (29%), Gaps = 38/478 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ ++ NI NA+ Y R+ + Sbjct: 3 STFHSLEVARRGLVTQQTALQTVGHNIANANTPGYTRQRVNFVQTEPYPAPSLNRPQIPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + ++ D ++ +G E + ++ + + Sbjct: 63 QIGTGVEAGSIQRVRESFLDIQYRGENNKLGYWESRADSLQKMEEIM-NEPSETGLSTTL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S + + N + V V + F + + ++ D E+ + + + Sbjct: 122 DRFWQSFQDLAVNPTNAGARSVVRQRGLAVAETFRFLSDSLTSVQGDIKNEMNVTLKQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ VN I + A+D D+RD L+ ++S+++ I T ++G Sbjct: 182 ALSQQINNVNKQIGEIEPHGYLANDLYDERDRLVDELSQLVNIKTTQVGTGGSPSALAEG 241 Query: 225 TTLFETVP---------RDINFEKMNSYTVTSESNPIFIDG---VVVSSNQGSAVPKGKI 272 + V D K+NS ++ ++ +DG S GS GK+ Sbjct: 242 KLTIDLVDDSGRKIGNLVDATSLKVNSLSLEYHNDTELVDGYRLGDTSFGIGSMQASGKL 301 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + L+ + + L + + + + N + G I+ + Sbjct: 302 RGLIDSYGFMEGNTEKGLYPDMLNHLDTVAYEFAQEINRVHESGWSISSM---ETGEHTA 358 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 N + +VS + ++ N+A + Sbjct: 359 FKFFEFKNTDITAGNKKDVAKLFTVSADIVQSLDNIAASGYNKGVITTGEFHGYNGVENV 418 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + ++ + + + S +K+ F + +G L EE + Sbjct: 419 SVTVQSSVDAAGVQQFAYKVYDAAQSPKQELKTSGNFASL-----EQLGAGLSEEFTD 471 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRS 416 ++ + + ++ + +N + T Y + IG L + Sbjct: 493 GNFINIDIPKVGQVGGRVGDGSNAVALAEVKARSLQLNGVSTTFQNYYESVIGGLAVDAQ 552 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +++ L S+ + + + + GV+L EE++ +I+ + +YN S ++I TD++L ++ Sbjct: 553 EANRLSHNSETLKLSVDQRRQSVSGVSLDEEMTSMIQYQHAYNASARMITLTDELLDKII 612 Query: 477 EGV 479 G+ Sbjct: 613 NGM 615 >gi|114566393|ref|YP_753547.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337328|gb|ABI68176.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 475 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/482 (10%), Positives = 123/482 (25%), Gaps = 11/482 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + I NI N + Y + + + R ++ Sbjct: 1 MMRSMYSGVSGLRNHQTRMDVIGNNIANINTAGYKKSRVVFQDTLYQTMRGATRPDSSGS 60 Query: 63 FDKV----LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + S ++ D + I + + + N Sbjct: 61 RGGTNPMGIGLGMSVSSIDQIHTGAPTTATNKLLDMGIDGDGYFMIRHGQQKYFTRAGNF 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 D G V VQ + T V + + + Sbjct: 121 ELDTKGNLVHTANGYYVQGWVTKIDPVTGQWNLDCSREVETVDISGLLACDPQATKEMSF 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 +D D + ++ I+++ ++ T V Sbjct: 181 SGNLDAEIPFKQVDPEDESIYPGTQESIITSMDVWDSLGKKETVYFRFFKYEVDAGPPRL 240 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + ++ NP+F + S A + + + +L + Sbjct: 241 SNWAVDISLN-NPLFENAKDYDSTSDFATVDLSVDPPTEETLTTGETEIVRLFNLQF--- 296 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + P + + Q+ N S + Sbjct: 297 DDNGKVVLAGTPDDPEPKTVDLIIDRASEAAEDIEFKIDFSAMTQFAGN-SVTEIAQNGY 355 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + Y + ++ +A L + + + S Sbjct: 356 GMGSLSSYTVGIDGVIRGSYDNGETRDLARVALARFQNPAGLTQLGGTM--FQKSVNSGE 413 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ I S V+L EE + +I ++ + ++++I +D+M+Q L+ Sbjct: 414 AVVSPPTESGMGKIVPSSLEMSNVDLSEEFTDMIVTQRGFQANSRIITTSDEMIQELVNL 473 Query: 479 VK 480 + Sbjct: 474 KR 475 >gi|307718606|ref|YP_003874138.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] gi|306532331|gb|ADN01865.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] Length = 462 Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 41/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + N + I NI N + + + R + Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ ++ E + S Sbjct: 61 GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAIQGEGFFILRKGDRSFYTRAGVFGL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E Y N + L Q F + +Q + + + Sbjct: 121 DEEGYLVNPAN-GLRVQGWRAETVNGQTFINTTGSLQDLIIPVGSKDPASATTEVFLACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L I + + + ++ T Sbjct: 180 LDKRLPEIPPGAGPETVREG--------------TWVATYDIYDSFGNPHTLRIEFTKVV 225 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 P + +N + G ++ + + + + D Sbjct: 226 GEPNRWRATVTVDPDAETPTNTLVDVGETNNATNTFIIQFDNLGTIQSVEDEAGD----- 280 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + + + + + ++ N + + Q+ S Sbjct: 281 -------VLDAGALQVQVGFDVPEATIPPGEAAVRQTFNLNLGQVGSVVDAVTQFAERSS 333 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + N+ +A L + Sbjct: 334 TKVFRQNGYTMGYLEGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETM-- 391 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S ++ + + V+L E + +I ++ + +++ I +D Sbjct: 392 FRVSLNSGDPNVGPPNFAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSD 451 Query: 470 KMLQTLLEGVK 480 +MLQ LL + Sbjct: 452 QMLQELLTLKR 462 >gi|217076647|ref|YP_002334363.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B] gi|217036500|gb|ACJ75022.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B] Length = 847 Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 58/425 (13%), Positives = 126/425 (29%), Gaps = 33/425 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 SL N + + NI NA+ + R+ + Sbjct: 5 SLFGALNTGLLGVYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSIPL 64 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D ++ + + E + A + ++ + Sbjct: 65 QIGTGSKVKDIQRIRDEFLDIQYRQVNNKYNYWDSITANLHFVEQLFA-EPGDSGIRYLF 123 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +E + + + ++ AEE+V+N ++++R D D EI + + Sbjct: 124 DSMWSGIEEIITDPTNSAAKRELVSRAEELVKNVKDLYSRLEQLREDLDYEISQRVEQIN 183 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + L +N ++ A K +D LD+RD +L +S+ I + + + D Sbjct: 184 GMVKRLADINSKVRLSMALKSTPNDLLDERDRILDDLSKFADIFYTEDASGQISLRIGDQ 243 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + ++ + IF+ V G +KA + +RD ++ Sbjct: 244 IVLTGSDVNELRALER---PYGKGFKEIFVGNSKVDI------HDGSLKAAMDLRDDIIV 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+LDE L F+ NS+ DN + Sbjct: 295 KYMNRLDEFVLYLTDKFNLIHKDGFNSDGSVTGLNFFNEMTADNIENSVLFRIAGSKRVE 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ + K ++ S + + T+ ++ Sbjct: 355 GGPIKYISGMSNRDNLSDITTKQFIDQGAIVFFDGSSNAQAISVNA------GDTIQDFM 408 Query: 405 RNSIG 409 Sbjct: 409 NTVSS 413 Score = 90.5 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 43/392 (10%), Positives = 114/392 (29%), Gaps = 10/392 (2%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILG--KTVIDNAEEVVQNFNTSAREVQKIRADA 152 +N + + + ++ Y N SE + I TS + + D Sbjct: 448 DFNGNMFNTMGFNTKDVDIYVINQSEFNVQEGTYKIKINGTEANINVTSGYTINDLANDI 507 Query: 153 DKEIELEISNL--RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + ++ + L + +++ + D+ Q ++ ++ + Sbjct: 508 NSNFSSDVKAVVYNSKLLIIPTKSNSFDRNLVNIQDSDGLFTQSNLHVETYKALDTSKET 567 Query: 211 VRNNNDMVV---YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + N D + T T++ + E + + +G+ Sbjct: 568 LDNILDHTLPFKITIGATSIEIDPTQTTLKELADKLNEVGTGILFDVTPHNKFVIRGTRS 627 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 KI ++ +++ + + A Sbjct: 628 MDFKIDKTIKGPEALFVKLGFIDADSDPTNDWDEDYVFLNPFDEPKSLRERFAKADTLFI 687 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNK 384 +KL S S + +V + + N P + Sbjct: 688 DKLTPNEPFRFVEKFNVNSTVSVNPETIAVDYGKIEDNTNWDAKVFSPTGQANTAIMEIL 747 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + + + EY + + + + + ++ IS GV+L Sbjct: 748 SKMRFEKILNDGRESFAEYLGGIVAEMGVEGETAMKMKDNTDIIMKDISNERERVKGVSL 807 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 EE++ +IK + ++N S +++ D+M+ ++ Sbjct: 808 DEEMANMIKFQHAFNASARVMTAVDEMIGRVI 839 >gi|304558598|gb|ADM41262.1| Flagellar hook-associated protein FlgK [Edwardsiella tarda FL6-60] Length = 546 Score = 162 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 78/549 (14%), Positives = 162/549 (29%), Gaps = 77/549 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + A A NI N Y R+ + V V Sbjct: 1 MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQSVSFAENNGTSTPAGFIGNGVVV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 E L S + + + AD NS + + +L+ Sbjct: 61 SGINREYNQFIVNQLRQGQSEFATTSTYHKQISQIDDLLAD--STNSLSANMQNFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S+ +TVI NA + F T+ ++ + + + + + + ++ Sbjct: 119 NLVSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESSTNATVSNNAEQINDYAKQIAN 178 Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I T + +D LD RD + ++++I+ + +++ + + G +L + Sbjct: 179 LNNRISELTGASGGTAPNDLLDLRDRMASELNQIVNVDISMQDGAM-NISFAGGLSLVQG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + G +S + + G + + + R+ + +NQL Sbjct: 238 GDAYSVKAVPSSSDPSRT-TLAYDRGNGLSEVPEARISGGSMAGIFRFRNEALDNTRNQL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A + +F++ + G + + S+ + Sbjct: 297 GQIALSMANAFNQVQSEGFDLNGDKGGDLFGFGQPESLANTNNASKASLSASYDDISKVQ 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLI--------------NHYCDSFNKNFIFDPVAGINT 396 D K WNV LA + N + + T Sbjct: 357 ATDYRIDFKDGKWNVTRLADGTQQTIAPEADGGDTVLKFDGLKVKINDTPAENDSFKLRT 416 Query: 397 NVTLLEYARNSIGWLEKNRSDS--------------------------HDLHMKSQVVFN 430 T++ I K + S L + Sbjct: 417 TSTVINGFDVKISDPAKIAAGSTKDEVGDNTNAQKMLDLQNKKIVGGKATLSGAYAGLVG 476 Query: 431 HISES---------------------YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 I + GVNL EE L++ +Q Y + ++I Sbjct: 477 TIGNQTNGAKVDSTAQGNVVKQLTKEQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQTAT 536 Query: 470 KMLQTLLEG 478 M LL+ Sbjct: 537 SMFNALLDI 545 >gi|331269279|ref|YP_004395771.1| flagellar hook-associated protein 1 [Clostridium botulinum BKT015925] gi|329125829|gb|AEB75774.1| flagellar hook-associated protein 1 [Clostridium botulinum BKT015925] Length = 647 Score = 162 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 51/417 (12%), Positives = 118/417 (28%), Gaps = 28/417 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L + N + NI N++ + Y R+ + + Sbjct: 1 MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRALMETTRPFGMPAMDNQVG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + D + +S +GQ + + E + ++ + ++ Sbjct: 61 PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGISN 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I K D+ + + + + A + N + +++K++ +A + I+ + + Sbjct: 120 LIGKFFDAWQEVANHPEGSNSRTVLASQASAIASELNHTYNQLEKVKENAQESIKQSVFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L + +N I S + +D +D+RD+LL ++S+ + + + Sbjct: 180 VNNALDRVDKLNQQIMAVKISGMEPNDLMDKRDLLLDELSKKFNVVVEQDKFGSINLKPK 239 Query: 223 DGTTLFETV-PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 T+ + + N + I + KGK + + + Sbjct: 240 YTKTVDGNGEVANPLLVRKNPNDEVMRFSYIK--------SIEPKYTKGKDEYTITYLKN 291 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 E + V + I N Sbjct: 292 GDKDNVAIFKLKLTGKTEEEKEAQFKRLDESRVIWSTSDKNYDSKNGLAVDKNGGVIGKN 351 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 P + + K L + D + K F A + Sbjct: 352 PVNFEDLALFDLKDDEYKGELKGFMTVQQDADDYIEQMNKLAKGIAFSVNAIHSGKN 408 Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 47/98 (47%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + D + G + + Y ++++ L ++ + + S+ + GV Sbjct: 549 DITLGLDTIKGDINGMKIDSYFKDAVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGV 608 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L EE++ +++ + +Y + K+I TD++L ++ G+K Sbjct: 609 SLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 646 >gi|315186381|gb|EFU20141.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 462 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 41/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + N + I NI N + + + R + Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ ++ E + S Sbjct: 61 GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAVQGEGFFILRKGDRSFYTRAGVFGL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E Y N + L Q F + +Q + + + Sbjct: 121 DEEGYLVNPAN-GLRVQGWRAETVNGQTFINTTGSLQDLIIPVGSKDPASATTEVFLACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L I + + + ++ T Sbjct: 180 LDKRLPEIPPGAGPETVREG--------------TWVATYDIYDSFGNPHTLRIEFTKVV 225 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 P + +N + G ++ + + + + D Sbjct: 226 GEPNRWRATVTVDPDAETPTNTLVDVGETNNATNTFIIQFDNLGTIQSVEDEAGD----- 280 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + + + + + ++ N + + Q+ S Sbjct: 281 -------VLDAGALQVQVGFDVPEATIPPGEAAVRQTFNLNLGQVGSVVDAVTQFAERSS 333 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + N+ +A L + Sbjct: 334 TKVFRQNGYTMGYLEGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETM-- 391 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S ++ + + V+L E + +I ++ + +++ I +D Sbjct: 392 FRVSLNSGDPNVGPPNFAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSD 451 Query: 470 KMLQTLLEGVK 480 +MLQ LL + Sbjct: 452 QMLQELLTLKR 462 >gi|254516995|ref|ZP_05129053.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] gi|219674500|gb|EED30868.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] Length = 639 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 69/461 (14%), Positives = 149/461 (32%), Gaps = 26/461 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + V N + + + ++ NI N + + + R+ VT+ Sbjct: 1 MADVLNIGTSALLSLQRAISTTGHNIANVNTEGFSRQRVEFAALEPQLSGAGFVGSGVTI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + +S+ L + + A+ + + + S++ Sbjct: 61 AAITRSYDQYLAGDVLDRTSSAAGAATLGDLSGRVDDILANP--DTGLGPVLDEFFASVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + ++ AE + F + +A+ I+ + + F S + Sbjct: 119 DVANNPGSLPERQVLLGQAEVLADRFQYLNDRFAGLDQEANIRIDNSVREINAFASGIAD 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I +T + +D LD RD LL ++SEI+G++T+ + + + V +G L Sbjct: 179 LNDRIVSETVRSGGQQPNDLLDARDQLLNRLSEIVGVTTVDQGDGAVNVLVGNGQALVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + VT + I G+ ++ G + G++ A+L R V+ ++ L Sbjct: 239 NSVTELETFTDPFDVTRLNVGIA--GIAAQTDIGRFLSGGELGAVLDFRGDVLDGARSDL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG-----IKDLDNKLCQGISETICVNPQYR 345 +A L +F+++ + + G + N IS I Sbjct: 297 GLIATGLAATFNDQQALGLDLNGNFGGDFFRPLEPTVSESTSNTGTGSISAVITDPTNLT 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + L G+ N++ + D + P AG + + + Sbjct: 357 GDQYELSFDGAAYT-LRNTTTNVSTTGPGPSFSIDGVDITVSGAPAAGDDFLIAPVAQGA 415 Query: 406 NS----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + I + S S V Sbjct: 416 SLFDVVISDPRAFAAASPLRSSTSLANAGSGQLESLAVSDV 456 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 40/437 (9%), Positives = 109/437 (24%), Gaps = 14/437 (3%) Query: 58 ENKNMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + +++ + + Q + + + + + Sbjct: 201 ARDQLLNRLSEIVGVTTVDQGDGAVNVLVGNGQALVVGNSVTELETFTDPFDVTRLNVGI 260 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + E+ + + R+D + + +N Sbjct: 261 AGIAAQTDIGRFLSGGELGAVLDFRGDVLDGARSDLGLIATGLAATFNDQQALGLDLNGN 320 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + IS +I T + + + + TL T Sbjct: 321 FGGDFFRPLEPTVSESTSNTGTGSISAVITDPTNLTGDQYELSFDGAAYTLRNTTTNVST 380 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----- 291 S+++ + + V +G + I D + L Sbjct: 381 TGPGPSFSIDGVDITVSGAPAAGDDFLIAPVAQGASLFDVVISDPRAFAAASPLRSSTSL 440 Query: 292 ------EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++ + + + + G+ D G Sbjct: 441 ANAGSGQLESLAVSDVASLPLAGNIVLTFNPDALGAGVPGFDVSGIAGGPIAYDPATDGN 500 Query: 346 SNPSFLRDGGSVSKKF--LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 L D + ++ D ++ + + + Sbjct: 501 GVDVTLGDINFTLSGIPEDGDSFSIENNVDGSGDNRNALALAALQTERTLNGGTASYQDA 560 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + + + + ++ GVNL EE + LI+ +Q+Y + + Sbjct: 561 YASLLADVAVSTRQAKSAASTEGALLDQSRAALNSAQGVNLDEEAANLIRYQQAYQAAAQ 620 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D++ QTLL + Sbjct: 621 VIAVADEVFQTLLNATR 637 >gi|229029418|ref|ZP_04185501.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271] gi|228731877|gb|EEL82776.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271] Length = 432 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNFGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M NS + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLAYYNYKNSVLSRVESMVGTTG-ENSLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAVDTKGQ-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + + ++ + +NP++ ++ Sbjct: 286 NLEDLMSSMKNEVNTVMGK--------------------DFFVGDYAKELKLNPEFANDF 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K + ++ + I Sbjct: 326 SKMKISAETANKLAGITDDDYKDG-------------------------LSYKKALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S+ + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VKVASDKSEVNGYQKNHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAISTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|261318809|ref|ZP_05958006.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|265987184|ref|ZP_06099741.1| FlgK [Brucella pinnipedialis M292/94/1] gi|261298032|gb|EEY01529.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|264659381|gb|EEZ29642.1| FlgK [Brucella pinnipedialis M292/94/1] Length = 382 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 112/375 (29%), Positives = 178/375 (47%), Gaps = 5/375 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAG 370 + + +NV+ AG Sbjct: 361 ANGANYKYNVQGAAG 375 >gi|170768131|ref|ZP_02902584.1| flagellar hook-associated protein FlgK [Escherichia albertii TW07627] gi|170122897|gb|EDS91828.1| flagellar hook-associated protein FlgK [Escherichia albertii TW07627] Length = 547 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 71/548 (12%), Positives = 162/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQAKSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E LHA + + + M +S + SL+ Sbjct: 61 SGVQREYDAFITNQLHAAQTQSSGLTSRYEQMSKIDNML--SGSTSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGASVNQVNNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + D LDQRD L+ ++++I+G+ V+++ + ++G +L ++ Sbjct: 179 LNDQISRLTGVGAGASPDDLLDQRDQLVSELNQIVGVEVSVQDSGTYNITMANGYSLVQS 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSTDPSRTTIAYVDASAGDIEIPDKLLTSGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + Sbjct: 299 GQLALAFAEAFNTQHNKGFDANGKEGGNFFAIGKPAALQNSNNKGNSALSATVTEGSAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + +F + T + + Sbjct: 359 ATDYKISFSNNQWQVTRLASNTSFTVMPDANGKVSFDGMELTFTGTPKANDSFTLKPVSD 418 Query: 411 ----------------LEKNRSDSHDLHMKSQVVFN------------------------ 430 + ++ + Q + + Sbjct: 419 AIVNMDVLITDEAKIAMASDKDAGESDNRNGQALLDLQNNSKTVGGTKSFNDAYAILVSD 478 Query: 431 ------HISESYSNTVGV--------------NLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S ++ V NL EE L + +Q Y + +++ + Sbjct: 479 IGNKTATLKTSSTSQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 IFDALINI 546 >gi|303240171|ref|ZP_07326691.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] gi|302592262|gb|EFL61990.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] Length = 535 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 81/530 (15%), Positives = 179/530 (33%), Gaps = 55/530 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51 FN A A + I NI N + Y R+ + T Sbjct: 5 FFGFNVAVRGLYTAQRNLDVINNNINNVNTPGYSRQQAVQTAAKPMAIYDGTGMVGTGSD 64 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V D + + + G+ ++ A E+ ++ ++ + + SL Sbjct: 65 VKAIERVRDEYLDFKYWSENVSYGEWNAKEAMLADMEVTF-NEPSDSGFNTILDEFFSSL 123 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +K+ S + + V + V + FN+ A ++++ D + IE ++ + +++ Sbjct: 124 QELAKDPSSEAVRTLVSERGVTVAKYFNSLATHFEELQIDVNDRIETAVTEINSIGTQIQ 183 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223 +N I + A+D DQR VL+ K+S+++ I ++ +V T Sbjct: 184 QLNRQIYSAELDGNTANDLRDQRTVLVDKLSKLVNIEANEVVAGKLPSGKDDKRLVITIS 243 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281 G + K + E + + V A+ G++K + IRD Sbjct: 244 GKAFIDHFDLSKLAVKQRGTKLNPEEDVPNLYDVGWEDGNNLAIRGGELKGYIDIRDGND 303 Query: 282 ---------VVPIFQNQLDEMARVLIGSFS----EKDPIAGNSENVPG-LFIADGIKDLD 327 +P + +L+E + +F+ + D G Sbjct: 304 GDNGSPMYSGIPTYIKKLNEFVQTFAMAFNEGYIDNDTSGTIEAGEDGLGHADGYGLGSA 363 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + L + S+ F+ ++S A + + NK Sbjct: 364 SSLGTRFFTMLGEGKNALSSTDFINGKTTISGVVDRYKNITAKNFAVSRDILEDSNKIAT 423 Query: 388 FDPVAGINTNVTLL------------------EYARNSIGWLEKNRSDSHDLHMKSQVVF 429 D + V + ++ ++ + L + + + + + Sbjct: 424 SDNLDEEGNIVNINKLIEMRTNSHMFSEGAPEDFMKSIVTTLGIDSQQAIRIASNQEAIV 483 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I S+ GV++ EE+S L+K +Q+Y+ + +++ ++ L+ V Sbjct: 484 EQIENRRSSDSGVSIDEEMSNLVKQQQAYSAAAQMVNTMAEIYDILINRV 533 >gi|15606764|ref|NP_214144.1| flagellar hook associated protein FlgK [Aquifex aeolicus VF5] gi|2983977|gb|AAC07523.1| flagellar hook associated protein FlgK [Aquifex aeolicus VF5] Length = 426 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 68/483 (14%), Positives = 156/483 (32%), Gaps = 63/483 (13%) Query: 3 LLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRD-TMTTISPENVTVVTQRSENK 60 + FN + RNI NA +NYV + + + +T R Sbjct: 1 MFGASFNIISQALEVYKKMIDVKNRNIANAQEENYVAEEPVVQSDLYSGITFQEVRRIQN 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 F + S + + + + E + + N Y+++ S + K + Sbjct: 61 FNFINTRNEKLSYVSYLEERRDYLSKLESVFQELSQGNGLIDYVNRFFQSYQELMKEPTN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI--- 177 + +++A+ +V+ + E+ + + D I + + + ++ +N I Sbjct: 121 EGAKSQFLESAKMLVKTIKSRYGELTRSYNEIDYTINDYVRKVNELVKKIYKINKEIFFK 180 Query: 178 -KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 D LDQRD L+++S+ I + + VYTS G L + Sbjct: 181 YAQTKVRGEDYKTLLDQRDKYLKELSQYINVRAQEDELGRIKVYTSKGFVLVDFSENFFT 240 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + S+ + V G+IK L+ + + N+LD + Sbjct: 241 LK----------YEGGKLIYEKDESDITNVVESGQIKGLIDAK-GDIENLINKLDNLRDY 289 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ + + S Sbjct: 290 LVN-------------------------------------NVKIPVNGGGEASVFSGASI 312 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N++ G D + N ++ G + ++ ++ Sbjct: 313 NDFEVDANLETNLGNLDFSRTQDYAQNALTWWEEAKGRTK---------DITNYVATQKN 363 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + +++ + + GV++ +E +++++++Y K++ D+M +TLL Sbjct: 364 ALDSEYEVEKALYDSLEKKILERQGVSIDQEFMEIMQIQKNYEAVAKILPRIDEMFRTLL 423 Query: 477 EGV 479 V Sbjct: 424 NMV 426 >gi|311694367|gb|ADP97240.1| flagellar hook-associated protein FlgK [marine bacterium HP15] Length = 676 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 129/370 (34%), Gaps = 16/370 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52 + + + + NI NA+ Y R++ + V V Sbjct: 1 MAGLIGIGLTGILSHQAALNTTGNNITNANTPGYSRQEVLFETQEGQRTGAGTIGSGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + S+ G+Q L S + + + + ++ ++ SL+ Sbjct: 61 ADIRRLANEYLVQQVREDSTLYGEQEALNSELTRLDNLLGGE--STGLSNALNNFFASLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + V+ A++VV F +E + R +++ + + L + Sbjct: 119 NAAEDPTSLPQRQLVLSEAQQVVNRFQALNQEFIQQRESIKTQMQQGVKDANTLLKSIAE 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N AI A ++ LD+RD L+++SE+I I + + + V S+G +L Sbjct: 179 LNLAISESPGIAQGQMPNELLDKRDEKLRQLSELISIKVSPADGSQVNVSLSNGLSLVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + N+ T + N + GK+ LL+ + ++L Sbjct: 239 SNASTLGTRENAEDPTRL--EFTLSNGGRLVNIDEQITGGKLGGLLRFDTEGLKPAFDEL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L + + + I + E G I L+ + + + Sbjct: 297 GRIAIALSDTMNHQHEIGMDLEGELGGLFFTDINSLEAQRSRVVPNGNNAPSTNGQLAVE 356 Query: 351 LRDGGSVSKK 360 + D ++ Sbjct: 357 ITDSSALPAG 366 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 88/375 (23%), Gaps = 16/375 (4%) Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L T+ E + + + + N S + I + Sbjct: 302 ALSDTMNHQHEIGMDLEGELGGLFFTDINSLEAQRSRVVPNGNNAPSTNGQLAVEITDSS 361 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A D ++ + T+ + + F F + Sbjct: 362 ALPAGRWTLQFSGDGRSYELIDQGTGRTVNQGRLPDPPQSEISMPGFNIRVEGGTFNAGD 421 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 Y + N G+VV+ + A I Q + + S Sbjct: 422 KYLIQPSRNAAESIGLVVNREEDLAFASPVRATTGDDNIGTGKIDQGTMLNVRNPFTNSL 481 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 G N P D P + S + Sbjct: 482 LPAFQSTGQLANGPITVTFDDPGTGLVFTVTDGGGNPIGPANRPYTPGVANELFSDNPAD 541 Query: 362 L----------------WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + ++ ++ + + E Sbjct: 542 GAEYQGFQFKITGQPADGDTFEINYNSNGVSDNRNAELLAALGTANTLNGGSQNFSEGYA 601 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + S + + + + GVNL EE LI+ + +YN S +++ Sbjct: 602 GLVEDIGVKTRQSQLDVDAGKTLLEQSTNQRESVSGVNLDEEAGRLIQYQAAYNASAQVM 661 Query: 466 MFTDKMLQTLLEGVK 480 + TLL+ + Sbjct: 662 SVAQDLFNTLLQSFR 676 >gi|206889963|ref|YP_002249841.1| flagellar hook-associated protein FlgK [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741901|gb|ACI20958.1| flagellar hook-associated protein FlgK [Thermodesulfovibrio yellowstonii DSM 11347] Length = 554 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 140/390 (35%), Gaps = 21/390 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 MSL A+F+ + + + NI NA + Y R+D + Sbjct: 1 MSLTALFDIGKTGVLTYQKALEVVSHNISNAATEGYTRQDVIFQNMSSGILSLSGVTGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + R + D L SS + ++ + E + +D + ++ I+ + Sbjct: 61 VKLEDIRRMYDSFIDLQLKTESSNLAYWDVVYNGMLRLENIF-NDASETAFSNSINDFFN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + S+N S ++D A + + N S + + R + K+ + ++ + +L + Sbjct: 120 AWQELSQNPSGTAERTLLLDKANYLTKRLNLSYKSLIDERQEIYKDTQSLVNQVNNYLDQ 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N+ I S D DQRD L++++++I+ I+ N+ + G L + Sbjct: 180 INELNEKIAASPGS----LDAKDQRDNLVKQLNDIVQITYFEDNSGRYSI-LLGGMPLVD 234 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++S ++ ++ V S + + GK+KA + +RD +P + + Sbjct: 235 GGKVYHLSTALDSK----QNMQFSLETVSGSIDVTRLIQGGKLKAEIDLRDETIPEYMEK 290 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+ + L + + + + G + DL + +N + Sbjct: 291 LNMLVFDLTEAINAQHRQGYGLDGTTGNNFFSQLYDLTVSSPSSPTSPYSDISFKINNVN 350 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + V D Sbjct: 351 TNTYDEYQVEFDGSAVPPAWTVTDNTTSSS 380 >gi|160939640|ref|ZP_02086988.1| hypothetical protein CLOBOL_04532 [Clostridium bolteae ATCC BAA-613] gi|158437431|gb|EDP15195.1| hypothetical protein CLOBOL_04532 [Clostridium bolteae ATCC BAA-613] Length = 484 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 69/498 (13%), Positives = 155/498 (31%), Gaps = 44/498 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PEN 49 A+ + + NI N+ K Y R+ T + Sbjct: 2 GLETAKRGIQVNQKAIDIVGNNISNSKTKGYTRQRLDTVSVHTYGSSQYNYSSIPLAGQG 61 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLR 108 V D +G + E + +D + ++ L Sbjct: 62 VDARGVAQIRNPYLDAKFRQQYGDVGYYDQKAAIMDQIEGIISDPEVEGTGIKAALTTLS 121 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +L +S++ ++ V++ + V Q N ++ + ++ + + ++ L Sbjct: 122 QALADFSQSPYQETNANIVMNAFKGVTQVLNEYDANLKTLMEQTKNDLSVAVEDINTKLD 181 Query: 169 ELTVVNDAIKFKTASKHD-------AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 +L+ +N +I + S +D +D LDQR+V+L +S + + + V Sbjct: 182 QLSELNSSIAHEIFSNNDYDGVNYGPNDLLDQRNVILDDLSRYGDVQVTDLEDGKIQVKI 241 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 +G + + +K+N + + + I ++ Sbjct: 242 -NGKVVVDASGASYTNDKLNIGSDGVTLTWNSNNQNANLGAGAIRGFTDMLTGADPI-NA 299 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 +P +QN++D A+ L F+ K + P + + I ++ Sbjct: 300 GIPYYQNKMDNFAQTLADVFNNKI-----HADDPDFPDKYKFLLQGGVDGKVTAGNISIS 354 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 Q+ + S++ + +L N F D G T Sbjct: 355 DQWADDVSYIIRKQNP-------------DGELDNQDILDMKAAFEQDFNFGGEYTGTFS 401 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 E+ + L + S + GV+L EE ++ ++Y Sbjct: 402 EFITSVTNTLGSGIKTNSARMSASLAIAESADSERMGVSGVSLNEEGISMMTYNKAYQAL 461 Query: 462 NKLIMFTDKMLQTLLEGV 479 +L+ D+ L ++ + Sbjct: 462 GRLMTTMDEQLDMIINKM 479 >gi|152975150|ref|YP_001374667.1| flagellar hook-associated protein FlgK [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023902|gb|ABS21672.1| flagellar hook-associated protein FlgK [Bacillus cytotoxicus NVH 391-98] Length = 440 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 143/492 (29%), Gaps = 64/492 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------E 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQVGLKTTQQNLTNIHTPGYVRQAVNYGSVGANNGNTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V+ + K + S + + + E + NS + + Sbjct: 60 GVQVMGVDRITDEIKTKQYNEQLSQLSYYGYMDDALSRIESIIGTTG-PNSLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N R++++ +I+ + R Sbjct: 119 NAFREVAKNPEQANYYDTLIAATGKFTNQLNRIGRDLEEAEMQVSADIQGHVDEFNRLAE 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N+ I+ A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAKANENIR--EAGLKVPNQLLDERDRIITEMSQYANIEVSYESGNPNIASVRISGVLA 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S + + K KI N Sbjct: 237 VSGQDTYPLQLQKEKEPISVQISGTDIPLKSGKISSAIDMKVKITGNKDKHVKGYKDSLN 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +L + + +KD G+ IS+ I +N + ++ Sbjct: 297 ELMSAIKDQVNGVMKKDFFVGD-----------------------ISKNIRLNSELANDV 333 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ +K+ D F Sbjct: 334 SKMKISTETAKELAGISDKEYTDGLSYKQALDKFLVG----------------------- 370 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + +F + + GVN++EE+ L+ ++ + ++K I Sbjct: 371 --IASDKSAASAYKDIHTNLFTDTEQEKMSMEGVNMEEEMVNLMAFQKYFVANSKAISTM 428 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 429 NEVFDSLFSIIR 440 >gi|167770235|ref|ZP_02442288.1| hypothetical protein ANACOL_01578 [Anaerotruncus colihominis DSM 17241] gi|167667557|gb|EDS11687.1| hypothetical protein ANACOL_01578 [Anaerotruncus colihominis DSM 17241] Length = 520 Score = 160 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 68/512 (13%), Positives = 168/512 (32%), Gaps = 40/512 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48 F+ A+ A + +N+ N D+ Y R+ + + Sbjct: 2 GFDVAKRGIMTAQKGIDITGQNLVNWDSAGYTRQRVEQVAVGVNPYTSRYGSNRIGTAGQ 61 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISK 106 V ++ D +S Q E + +D ++ ++ Sbjct: 62 GVDILGIGQTRDKFLDARFRELTSEASYYDQAQKILGDLESVISDFEPDSDSGIGAMLNG 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + ++L+ ++ + V +++ Q + ++ ++ ++E+ + N + Sbjct: 122 ILNALQPDTEQADSETYASLVRSAFKDMTQTLQYLSGKLDRVAEQQKFDLEVSVENFNQI 181 Query: 167 LSELTVVNDAIKF----KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 L +++ +N+ I S + ++ LD+R+ LL ++++ I + + + Sbjct: 182 LEKISGLNEVISNDRNVLQNSHYGPNELLDERNYLLDQLAQYGEIGVTTNVDGTVTIEMD 241 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPI-----FIDGVVVSSNQGSAVPKGKIKALLQ 277 T L + + + + TV + DG++ ++ I + Sbjct: 242 GHTILDGSKYDAMEMSENPNGTVVLKWVSSGDKIQVTDGILKATTDFLNGRGPNIIQEGE 301 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 V +Q+ LD A L+ + P + ADG LD Sbjct: 302 TTYRGVRYYQDALDIFAHQLVEVANNSIPNYQVDAAGELILDADGNPVLDPDQPYRKLLG 361 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-------- 389 + + + G V+ + DS + ++ D Sbjct: 362 SISDQPDANGKYVVDPDGPVTADNISITDEWNADASYFVARKDSLDNKYVVDLYNKLKND 421 Query: 390 ----PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 G + T +Y L ++++ + S + +S GV + Sbjct: 422 DNVFQGRGESFTGTFKDYLTGYSATLAQDQNYYKNRLQSSNNLLYTTEDSRDEVSGVVMD 481 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EE++ ++ ++S +++L+ D+ L L+ Sbjct: 482 EEVANMMLYQKSLQAASRLMTTLDEALDVLIN 513 >gi|187778686|ref|ZP_02995159.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC 15579] gi|187772311|gb|EDU36113.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC 15579] Length = 624 Score = 160 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 19/258 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 4 MSGLFGTLNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 63 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 64 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFSSRHKFLSQIENIL-NEPTDVGISK 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S N V++ A + N + E+ K++ + +EI+ + Sbjct: 123 LFGKFFDAWHDLSINPQNSNAKSVVMEQASALADELNHTFNELSKLKENTQREIQQTVFE 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L++L +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 183 VNSILNQLNQLNQEIVQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGINLSTS 242 Query: 223 DGTTLFETVPRDINFEKM 240 + ++ + Sbjct: 243 NHAKDYQDKTSPLGGTPP 260 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 45/425 (10%), Positives = 123/425 (28%), Gaps = 34/425 (8%) Query: 81 QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 ++++ S S + + + + +Q + Sbjct: 208 NDLMDRRDLLLDKLSAKFGIEIDKENFEGINLSTSNHAKDYQDKTSPLGGTPPQIQGKDG 267 Query: 141 --SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 + + D I ++ + N + D ++R + + Sbjct: 268 KFYDANLVQRINPEDVYRFSYIKDITPKDKQKLGENGKYEVTYYVGGDTKSEDNKRTITV 327 Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 SE + ++ +G + + S Sbjct: 328 TINSEE---EFKRLDEGRVLWTDKNGDVVKIPNNSS-----PDDKDNQSTETIKNNGSCD 379 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 ++ + P G++K + +++ + +Q QL+++A+ L S + + + + Sbjct: 380 FTNLKLFEPPSGELKGQMSVQEE-IDNYQEQLNKLAKALAFSVNAIHTQSLDPASPTDNA 438 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + I + I+ + G + K + + + Sbjct: 439 LNFFINGENPNNEMEITAGNIALNKAIKENPMKIIAGVTPNSGEGDGKRALAISQIKDVF 498 Query: 379 CDSFN-----------------------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + K + + +T+ Y + IG L + Sbjct: 499 MSIQDIKKDTDRKKFLEKFFKPNDEFEFKGTTLNTIGKDTNGMTMNTYFNDIIGGLGVDE 558 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ + + +S + GV+L EE + L++ Y + K+I D++L + Sbjct: 559 AEAKRMVKNQATLLAGFQQSRDSVSGVSLDEEFANLVQFNHCYQANAKIISTVDQLLDVV 618 Query: 476 LEGVK 480 + G+K Sbjct: 619 INGLK 623 >gi|32490795|ref|NP_871049.1| hypothetical protein WGLp046 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166001|dbj|BAC24192.1| flgK [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 545 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 84/550 (15%), Positives = 182/550 (33%), Gaps = 78/550 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ A N +I +NI N+ + +Y + + + S Sbjct: 1 MFNLYRLAGNALKAGEIALDTIGKNIANSTSSSYHKEKAILSASEGKLISEGYIGNGAHY 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + +S+ + ++ N I+ + D LE Sbjct: 61 NRLTRIQDELMSEKMRYANSSFYYAFEKNKKIKFLDYFFSE--NNKFLEGEINNVFDDLE 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S+ +I ++ N + + +FN +E++ + + EI+L IS++ S+L+ Sbjct: 119 FISQEPFNEIYKESAFLNFKSLNNHFNFIGKEIKDLENNIYNEIKLNISDINSLTSQLSS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I ++ + D LD+RD LL +IS+ IGIS + + V +G L + Sbjct: 179 INKEILKSK-NEKISLDLLDKRDQLLSEISKKIGISVNFNEKSTVNVALENGFFLVDKDQ 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQLD 291 + + ++ + + + S ++ G+I L+ + +PI + +++ Sbjct: 238 SN---DLKIKKYFENDFSLFYENSKKEFIQIDSDSIQNGEIGGLISFYNKEIPIIKEKIN 294 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD------------------------ 327 + L F+E + +S G I + Sbjct: 295 FIIFSLAKRFNEVNKSGYDSNKSIGQDIFSYSSFKNKLGLENKGNLEIHDINTKDNNHPA 354 Query: 328 ----------NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + P + + + N G I H Sbjct: 355 IYELFFQSNKWFITKKSEGKTTEIPYQSLDENSINKIIFDKINLHINGSPEDGDRIQIRH 414 Query: 378 YCD---------------------------SFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D + I N T E I + Sbjct: 415 LLDVSEDIKLNLISGKEIAHSSKNENTNNNENSLKLANIQNEKIINNETFTENYAKFISY 474 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + ++ + +++F++I +Y N +GVNL EE + Q Y+ + ++I Sbjct: 475 VGETANNIQSIENNQKIIFDNIVSNYENKIGVNLDEEYVQIEFYRQYYHANAQIIKVAST 534 Query: 471 MLQTLLEGVK 480 + +LL V+ Sbjct: 535 LFDSLLNVVR 544 >gi|83647167|ref|YP_435602.1| flagellar hook-associated protein [Hahella chejuensis KCTC 2396] gi|83635210|gb|ABC31177.1| Flagellar hook-associated protein [Hahella chejuensis KCTC 2396] Length = 892 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 64/387 (16%), Positives = 145/387 (37%), Gaps = 15/387 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS V N + A+ N+ NA+ + Y R+ + V Sbjct: 1 MS-TNVINIGLTGLKASQTALATTGNNVSNANTEGYSRQRVEFEATPSQFIGAGYLGTGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V L + +S + +++ + + + AD + +S + Sbjct: 60 GVADISRMTNQFLVSQLRSDTSMFSEIDKVRANVSQIDSLLADPT--TGLSPGMSAFFQA 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ + + S + V+ AE ++ FN + + D+++ I+ S + Sbjct: 118 LQGAADDPSSIPERQLVLTQAEGLINRFNVLFNRLDSQLNNIDQDMRSLITEANSLASGI 177 Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 VN AI + D +D LD+RD +++++SEI+ ++ + + + + + G +L Sbjct: 178 AQVNQAIVSARGSTQGKDVNDLLDKRDQMIRELSEIVSVTVVEQTDGQLNILVGKGQSLV 237 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++++ T + + G ++ S + G++ L RD ++ N Sbjct: 238 IGSHANSMGLQVSNTDPTRQEVALTESGGSGTNIITSEITGGELGGALLFRDQILQPSFN 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +A V+ + +E+ + + EN G + I +N + + P R Sbjct: 298 ALGRIAVVMADTINEQHQLGMDLENRLGGNFFEDINSENNARQRVTANEGNALPNDREIS 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + D +++ K D++ Sbjct: 358 VEIIDTSALTTKDYQIQFTGPSDNDIL 384 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/371 (10%), Positives = 95/371 (25%), Gaps = 22/371 (5%) Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + + A A+ V D + I S + Sbjct: 541 FTADEGQTAVSAEGVSVAQVPAPVASPGPYANGYGAQTVTIKNRDLETGIVTTQSPIN-- 598 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 I +++ A + V +E+ + + T +G T Sbjct: 599 ----------IAANASAEEIASALNSRNGVSASAYTEVEISNFVDDGGGTAPGLTINGET 648 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L S+T I + + + + G + + Sbjct: 649 L--------TAPVGGSFTPDDYVELINSNSNLQDAGVVAWSDGGTLTVRALTGKDITVEV 700 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V I + ++ + + ++ D + I + Sbjct: 701 TGD--ATDSVDIATANDTVATTIAGGSGTSVGGFVDVQLDDGVRLTADNNNIFLPAPVAQ 758 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + + + ++ ++ + T E Sbjct: 759 SSFRGYQASISGTPSQGDTFTIEYNENGVSDNRNALKMVGLETEGTIGGNISTYNEAYSQ 818 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + S + +Q + + GV+L EE LI+ + +YN S +++ Sbjct: 819 LVEVVGSTASQAQLDTESAQSLLRQSENRWQEVSGVSLDEEAGRLIQFQAAYNASAQVVS 878 Query: 467 FTDKMLQTLLE 477 ++ TLL Sbjct: 879 IARQLFDTLLN 889 >gi|150020229|ref|YP_001305583.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis BI429] gi|149792750|gb|ABR30198.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis BI429] Length = 846 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 63/425 (14%), Positives = 129/425 (30%), Gaps = 33/425 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 SL N + + NI NA+ + R+ + Sbjct: 5 SLFGALNTGLLGIYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSVPL 64 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D ++ + S E + A + ++ + Sbjct: 65 QIGTGSKVKDIKRIRDQFLDIQYRQVNNKYNYWDSITSNLHFIEQLLA-EPGDSGIRYLF 123 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +E + + + ++ AEE V+N ++++R D D EI + + Sbjct: 124 DSMWSGMEEIITDPTNSAAKRELVSRAEEFVKNIKDLYFRLEQLREDLDYEISQRVEQIN 183 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + L +N ++ A K +D LD+RD +L ++S + I + + + D Sbjct: 184 SMVKRLADINAKVRLSVALKSTPNDLLDERDRILDELSTLADIYYTEDASGQITLRIGDQ 243 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + IF+ V G IKA L +RD ++ Sbjct: 244 IVLTGSDINKL---RALERPYGKGFKEIFVSNSKVDI------HDGSIKAALDLRDKIIV 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + N+LDE L F+ N + + DN + Sbjct: 295 KYMNRLDEFVLYLTDKFNLTHRDGFNKDGSVTGLDFFSQIEADNIENSVLFRIAGSKRVE 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +++ + N N I+ F + +N+ T+ ++ Sbjct: 355 GGPINYISGMSNR------NNVNDITTKQFIDQGSIVFFDGSLNTTAISVNSGDTIQDFM 408 Query: 405 RNSIG 409 Sbjct: 409 NYVSS 413 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 57/454 (12%), Positives = 143/454 (31%), Gaps = 40/454 (8%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL--RDSLESYSKNLS 119 FD L+ + ++ +Q F ++ + + + L S + L+ Sbjct: 386 FFDGSLNTTAISVNSGDTIQDFMNYVSSAGLWFNFETALHNGSTYLLRMTSSSNLKNTLA 445 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 D G + + + D +I+++ ++ +ND Sbjct: 446 LDFNGNMFNTMGFDTKDVNIFVINQSEFNVQDGTYKIKIDGVEANITINSGYTLNDLAND 505 Query: 180 KTASKHDAHDFLDQRDVLL--QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A+ + + LL S+ I+ + + D ++ ++ + + Sbjct: 506 LNANFSSSIRAFIHNNKLLILPTKSKEFDINRLEIQDTDGLLTQAN-LHIETYKALNTEK 564 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 E +++ ++ I I + + K + L + ++ + R Sbjct: 565 ETLDNILNRTDPFKITIGATEIEIDPTQLTLKDFVAKLNEAGTGILFDITPHNKVVIRGT 624 Query: 298 IG-------------------SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 F + D N N +F+ + + ++T+ Sbjct: 625 RSMNFKIDKTIKGPEELFVKLGFIDADSDPTNDWNENYIFLNPFDEPKTLRERFSKADTL 684 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---- 394 V+ + P + V+ N + +A +I+ + K F A Sbjct: 685 FVDKIITNEPFRFVEKFKVNSTVSSNPETIAVDYGIISDNTNWDAKVFNPTGQANTTIME 744 Query: 395 ------------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + EY + + + + + +V IS GV Sbjct: 745 YLSSMRFEKILNDGRESFAEYLGGIVAEMGVEGETAMKMKNNTDIVMKDISNERERVKGV 804 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 +L EE++ +IK + ++N S +++ D+M+ ++ Sbjct: 805 SLDEEMANMIKFQHAFNASARVMTAVDEMIGRVI 838 >gi|168187526|ref|ZP_02622161.1| flagellar hook-associated protein FlgK [Clostridium botulinum C str. Eklund] gi|169294577|gb|EDS76710.1| flagellar hook-associated protein FlgK [Clostridium botulinum C str. Eklund] Length = 678 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 51/447 (11%), Positives = 123/447 (27%), Gaps = 31/447 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L + N + NI N++ K Y R+ + + Sbjct: 1 MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + D + +S +GQ + + E + ++ + ++ Sbjct: 61 PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGVSN 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I K D+ + +K+ + + A + N + ++ K++ +A + I+ + Sbjct: 120 LIGKFFDAWQEVAKHPEGSNARTVLANQASALASELNHTYNQLVKVKENAQESIKQATFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L + +N I S + +D +D+RD+LL ++SE + + + Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSEKFNVVVEQDKFGSINLKPK 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 T+ +F + + + + + Sbjct: 240 YTKTVDGNSDIGNSFLVRKNPKDEVMRFSYIKSIEKKMEKDTTKIDVTGTAGKYETTCKI 299 Query: 283 VP------------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + D+ + E+ + V + Sbjct: 300 TYLKNGDKDRPATFNLKITSDKATKKEAREEIEEKLKRLDQSRVIWSTSNKDDDARNGLA 359 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I NP + + G + L + D + K F Sbjct: 360 VDKNGGVIGKNPVEFEDLALFDLKGDEYRGELKGFMTVQQDADDYIEQMNKLAKGIAFSV 419 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + +D Sbjct: 420 NTLHSGRSSIGTVGTPMNNGVNVENAD 446 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 32/293 (10%), Positives = 90/293 (30%), Gaps = 7/293 (2%) Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES----N 250 D ++ + + + + + + G T + N Sbjct: 385 DEYRGELKGFMTVQQDADDYIEQMNKLAKGIAFSVNTLHSGRSSIGTVGTPMNNGVNVEN 444 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 ++ V K +L D P + ++ +E + Sbjct: 445 ADYMPFFVNGDIADEKYKIINGKKVLNYIDDTTPTKDIKTVADFDKILEGETEITAANIS 504 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS---NPSFLRDGGSVSKKFLWNVKN 367 + +++ ++ Q + + LRD + Sbjct: 505 VNRQIMDDVMQIKTRINDDKFALAAKNTKDGEQDGARALAIAQLRDKLFKIQNITKKTTR 564 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + D + G + + Y ++++ L ++ + Sbjct: 565 EEFIKENGANGKLNKDITLGLDTITGDINGMKIDSYFKDTVDKLGVQEQEAQRIVKNQGA 624 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S+ + GV+L EE++ +++ + +Y + K+I TD++L ++ G+K Sbjct: 625 LLKEFSQRRESISGVSLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 677 >gi|149908753|ref|ZP_01897414.1| putative flagellar hook-associated protein [Moritella sp. PE36] gi|149808295|gb|EDM68234.1| putative flagellar hook-associated protein [Moritella sp. PE36] Length = 443 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 82/489 (16%), Positives = 171/489 (34%), Gaps = 56/489 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS+ + + N + + N+ N + Y R D +++ + + V Sbjct: 1 MSMFS---NGLSGLNASQIALNVVSNNVANVNVSGYSRLDAISSSRYSASNSNLSTGQGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + R N + L +S G + S+ + E + +++ N S + L + Sbjct: 58 EITSVRRIADNYLNNSLWRSNSNNGFSQAYSSYLMISEQLVSNE--NLSIAKGLDGLFSA 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+S + S + +I +A+ + FN+ + D ++I +S+ S++ Sbjct: 116 LDSATTEPSTIAPRQQIIASADALANRFNSLYSNLDIQSTDISQQINGMMSSANTMFSQV 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I +A+ + DQR + K++E++ + + + + + S G + Sbjct: 176 AALNSKIVESSATGGNVTALQDQRAETISKLAELMALDVSRQGDGSITLSLSGGQPVVLG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 K + Y V+ +G V GKI +L + V+ + +L Sbjct: 236 ASAATLSNKGSGYAVSIAGQNFTFNGDV----------GGKIGGVLSYKSHVLDPTKAEL 285 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D++A+ + + + + + +P + Sbjct: 286 DKLAKDTADAMNNQLALGQDINVP----------------VGVGKPLFSYDPSNPAGSFQ 329 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + DG L G + + + L +G Sbjct: 330 VSDGFKPKDLALGAAGTGPGDNTNLTALLEMKD---------------GFLGIYNGLVGS 374 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L ++ SQ V + + GVNL EE L+K +QSYN + K+I D+ Sbjct: 375 LAIKSGEARSSAQASQTVAENALAQRDSVSGVNLDEEGISLMKYQQSYNANAKVISMADQ 434 Query: 471 MLQTLLEGV 479 + TLL + Sbjct: 435 LFSTLLRMM 443 >gi|119715016|ref|YP_921981.1| flagellar hook-associated protein FlgK [Nocardioides sp. JS614] gi|119535677|gb|ABL80294.1| flagellar hook-associated protein FlgK [Nocardioides sp. JS614] Length = 466 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 137/492 (27%), Gaps = 54/492 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPE 48 + N A N+ N YVRR + + Sbjct: 5 FSSINTALTALRYQQVALDVASTNVANVGTDGYVRRRVVGETLGAASSPAVWSRSLETGS 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + D + A E + + +S LR Sbjct: 65 GVQAARVDRMTDALLDSRVRREHGRQTYLDSRAEALARVET-GLAEPGPSGVAAALSDLR 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +L D + A VV A + +D + + + Sbjct: 124 ATLNDLGNAPGSDAARSQALSAAASVVDTVRLQAAHLSDEASDQRSHLLASVVEANSVAT 183 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 EL N I D +D+RD L +++E+ G VR + M V + Sbjct: 184 ELAATNRTIAAALGGGSDTTTLMDERDALALRLAELTGARGTVRADGSMYVELGGQALVD 243 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVV---VSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + ++ P+ D ++ + P G + A + + D V+P Sbjct: 244 GNSAAQLVVTGGVAADGSATGGPVTFDLDPDTTGATTALTGTPGGDLGATINVLDDVLPS 303 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + L +A+ L + + + ++ V G + D Sbjct: 304 YISGLAAVAKDLADHVNAQHQLGYDANGVAGGKLFDYDPT-------------------- 343 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + ++ + + V + + + Sbjct: 344 ---------------DVLGTFDVVITDASKLAVSALPGGVKDGNNATALAAAVDVDDQYQ 388 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + Q + + + + GV+L EE ++ +++Y + +++ Sbjct: 389 RLVNGFGSTVASARQMAKNQQALTDQVDSAREQLTGVSLDEETVNMVAAQRAYEAAARVM 448 Query: 466 MFTDKMLQTLLE 477 D +L TL+ Sbjct: 449 TTLDSVLDTLIN 460 >gi|238796909|ref|ZP_04640413.1| Flagellar hook-associated protein [Yersinia mollaretii ATCC 43969] gi|238719169|gb|EEQ10981.1| Flagellar hook-associated protein [Yersinia mollaretii ATCC 43969] Length = 547 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 76/548 (13%), Positives = 162/548 (29%), Gaps = 75/548 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 + N AQ+ ++A + NI NA Y R++ M + V V Sbjct: 2 NLINLAQSGLSSAQSALNVVGNNINNAVTPGYSRQNIMLGQAGGKTTNVGFFGYGVQVNG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + L ++ + + M D+ N S T + + +LE Sbjct: 62 VQRAYDGFINNQLRGAATEFFGLDGRYQQLSQIDNMLGDETNNVSVT--LDNIFGALEKM 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + + + + + Q FN+++ + + + +I ++++ +L VN Sbjct: 120 SSDPASAAARQGALGQFNAISQQFNSNSNTLNGLEKSTNTQITQSVADINACAEQLAKVN 179 Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232 + I + + LD RD LL +S+ +GI + V ++G L Sbjct: 180 EEIAKIHGQTGEVPANLLDHRDSLLSTLSKQVGIRVNENVTTGRVDVTMANGMPLVSGDR 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +++ + + GK+ L + R+ + +NQL++ Sbjct: 240 SYQLEASVSAENPSKTVVSYIDASGNKMLLDEEKMSGGKLGGLFKFRNEDLVDARNQLNQ 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-----NKLCQGISETICVNPQYRSN 347 +A + F+E + + G I + N + + Q ++ Sbjct: 300 LALQMANKFNEVNAAGFDKAGEAGGDIFNIANPTAIANRNNTSDTTLDISYTDISQVNAD 359 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL-EYARN 406 + G + + I + P N + + A Sbjct: 360 DYTVTYKGPGQNDWEVQTSDGRKITPTIGAAGELEFDGISIKPNGTPKPNDSFVLNPAAG 419 Query: 407 SIGWLEKNRSDSHDLHMKSQV-----------------------VFNHISESY------- 436 + G L +D+ + S ++E Y Sbjct: 420 AAGQLSVAITDADKIAASSSNDPNDQSNNENIKDMMDIKNATLIGTGTLTEGYASLVSSV 479 Query: 437 -------------------------SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 GV++ EE L Q Y + +++ + Sbjct: 480 GSSMTTLKANAATTAKAHDAIAYQQQAVSGVDMSEEFMNLQLYTQYYQANAQVLQTATTI 539 Query: 472 LQTLLEGV 479 +LL Sbjct: 540 FDSLLSIK 547 >gi|83594184|ref|YP_427936.1| hypothetical protein Rru_A2852 [Rhodospirillum rubrum ATCC 11170] gi|83577098|gb|ABC23649.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 727 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 74/435 (17%), Positives = 163/435 (37%), Gaps = 7/435 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQ 55 MSL + + A + + N+ N + Y R+ + S V T Sbjct: 1 MSLNLALSAGISGLQTAQKGLDLVSHNLANINTPGYTRKIFNPESVVLNGSGVGVQTGTI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ L + + + S+ + + NNS +H ++ ++ + Sbjct: 61 ARRVDEGLNRDLREELAKYTEYKTKASYYQRMQDLFGKPASNNSISHNLTAFGQQFDTLA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + +A+E+ FNT + +Q++R AD++I ++ + L + +ND Sbjct: 121 LETDKSTQQMATVRSAQELTSQFNTISTRLQQMRLTADQDIAGAVAEVNGHLKNIDTLND 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I A+ D D D+RD+ +Q+++E++ ++T R +VVYT G+TL + P + Sbjct: 181 EITLGVATGRDVTDLQDKRDLEVQQLTELVDVTTFERPGGALVVYTKGGSTLLDADPIPV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 +F +S T + V + + GK+ AL+ +RD VP +Q+Q+DE+A Sbjct: 241 SFTASSSVTAWDSKGGGDFSAISVGGSDITGEIGAGKLAALIDMRDKTVPAYQSQMDELA 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 S ++ + + + ++ + ++ + Sbjct: 301 GKFSDSINQIHNRGTSQPTIANSYSGTTTFIAPATQTMALTTGDVAITLFNADGTQKATT 360 Query: 355 GSVSKKFL-WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++++ I + +S + A ++ N + + L Sbjct: 361 TLKTIVPAVATGEDISTVTTAIQTWLNSGTGGGLTGATATVDANGKVQIKLGTNTASLAF 420 Query: 414 NRSDSHDLHMKSQVV 428 S + V Sbjct: 421 RDQASTTAGSTAGDV 435 Score = 83.5 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 49/428 (11%), Positives = 111/428 (25%), Gaps = 23/428 (5%) Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + S + ++ NS + + + + ++ + + + D ++ Sbjct: 300 AGKFSDSINQIHNRGTSQPTIANSYSGTTTFIAPATQTMALTTGDVAITLFNADGTQKAT 359 Query: 136 QNFNT------SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 T + ++ + + + N ++ K + + Sbjct: 360 TTLKTIVPAVATGEDISTVTTAIQTWLNSGTGGGLTGATATVDANGKVQIKLGTNTASLA 419 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 F DQ + + I+ N S + ++ Sbjct: 420 FRDQASTTAGSTAGDVTIAYDADGNGTTDQTVSGFANFLGLNDMFVANRGQWMADSDVKA 479 Query: 250 NPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + G + + + I L + + +++ + +E Sbjct: 480 QNWTPNVGGALTFYDSNNPPGGTAIGTLTIAPNETLKDIALKINSDTALSAKLEAEVVQD 539 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQG--------------ISETICVNPQYRSNPSFLRD 353 + +S + VN + S + Sbjct: 540 GDGYRLRIKDRAGKDMVITQTAGVGTGLIEQLGLKDSKAGLSGQLRVNQSLLDDSSRISR 599 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-TNVTLLEYARNSIGWLE 412 G + AG N SF FD G+ + +YA ++ Sbjct: 600 GAVLFNSDTGQYYISAGDNTTANQLAKSFQTAVSFDAAGGVTTGARSFSDYAALTLSQNA 659 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + + VN+ EELS L+ EQ Y S K+I ML Sbjct: 660 SEASAVATTVSYQSQLADTLQLKSAEISAVNMDEELSQLLVWEQMYRASAKVISAAADML 719 Query: 473 QTLLEGVK 480 L ++ Sbjct: 720 DVLNSIIR 727 >gi|302339108|ref|YP_003804314.1| flagellar hook-associated protein FlgK [Spirochaeta smaragdinae DSM 11293] gi|301636293|gb|ADK81720.1| flagellar hook-associated protein FlgK [Spirochaeta smaragdinae DSM 11293] Length = 627 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 63/468 (13%), Positives = 151/468 (32%), Gaps = 40/468 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S + +Q +++ NI NA + Y R+ + Sbjct: 3 SAFTGIEMGKRSVVAHAQGLSTVGHNITNAATEGYSRQRVEMSPYEPIYVPGLNREETAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + ++ ++ + + SS G + S+ + E + ++ S + Sbjct: 63 QMGQGVVTERISRAHDSILERRIVSQSSGKGYWDVRDSYILMAEQVY-NEPSELSVRGLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 K +S + S + ++ +I+ + ++ + ++ IR +++I++ + + Sbjct: 122 DKFWESWQDLSLHPEDNASRLAIIERGDSLMDGIHRRYEGLKDIREMLEQDIQVTVDRVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 S++ +N I A + +D LD+RD+L++K+++II IS R+ ++ V S G Sbjct: 182 NITSDIADLNREIIKVKAMGDEPNDLLDRRDLLVRKLADIIDISVDDRDPDEFTV-HSGG 240 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + N + V +S + G++ A++++RD + Sbjct: 241 MHLVQGDVVTKIAADPDP------RNEGYSRVVWEASGEDFRPKNGRLAAMVELRDGDIR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340 +LD M + +E G+ + N Sbjct: 295 KEIQELDTMTVNFVDMVNEVHRAGYGLNGKTGIDFFTEYPFVANANGNYDRNGDGAFDST 354 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + L V + G ++ D+ + +G Sbjct: 355 YIYRINGSNSLNPQEQVGISGTLRLSGSDGTVEIDYEPTDTVDDIVKRINASGSEVVARF 414 Query: 401 LEYARNSIGWLEKNRSDSHD-------LHMKSQVVFNHISESYSNTVG 441 R + + + + Q + G Sbjct: 415 DRLGR--LSLKGTPAAGIENPDFVIRGIEDSGQFLVG--YAGILEESG 458 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 39/342 (11%), Positives = 95/342 (27%), Gaps = 10/342 (2%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK----HDAHDFLDQRDVL 197 +++K + D + + +N ++ +A+ D+ Sbjct: 290 DGDIRKEIQELDTMTVNFVDMVNEVHRAGYGLNGKTGIDFFTEYPFVANANGNYDRNGDG 349 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + I I+ N V S L + + + TV I G Sbjct: 350 AFDSTYIYRINGSNSLNPQEQVGISGTLRLSG-SDGTVEIDYEPTDTVDDIVKRINASGS 408 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 V + + + +K +++ + L+G + Sbjct: 409 EVVARFD-RLGRLSLKGTPAAGIENPDFVIRGIEDSGQFLVGYAGILEESGPEGAYSWDG 467 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + + + G P Sbjct: 468 ADGVLALRGGEDGAGYAVAPLSHPSGW----IEINRQVKAEPATIAAGLGENGRPAQPGD 523 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + D + + + EY +++ + + + + +S+ Sbjct: 524 GSAALAIAALRDRDVMVGSYRSFDEYFSSAVARVGLKGETAQRSLETEEAIMKDLSDRRE 583 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVNL EEL+ +IK + Y +++ I D+ML ++ + Sbjct: 584 SIAGVNLDEELANMIKFQHGYAAASRFITAVDEMLDVIINRM 625 >gi|312792656|ref|YP_004025579.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179796|gb|ADQ39966.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 494 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 54/496 (10%), Positives = 128/496 (25%), Gaps = 20/496 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + + ++ + +I Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNKQIDTTKSPSKINILAFPTLSPQATDQIILDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 S +V K D + L DV + + + + + + + Sbjct: 181 DSNKKIVEIQYDNDGNGKIDKDEKLTGEDVYNKIKDPSMSVLDKYQKILNKIGDDMKSSI 240 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 F ++ V +SN F ID ++N + A Sbjct: 241 SFRIFDSQGGEHTLSLTFVKYDSNKWFWIIDSPRKNNNYTEYLDDNIEGANTNFIAFGRI 300 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 F ++ + L G+ ++ L + N QY Sbjct: 301 EFDSKGQVINVQLEGAQNQNSNKFTIKFKNNSLDEITFDTSIGNTDETLNIFKFDYIKQY 360 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + S S N+ +I Y + N+ VA L Sbjct: 361 SLDSSIRAKKVSGYAAGSLQGFNVDATGKIIGVYSNGLNQIIGQIAVATFANPAGLQRIG 420 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N ++ S ++ + I + V+L +E + +I ++ Y + ++ Sbjct: 421 DNL--YINTPNSGDPEIGIPGTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANARV 478 Query: 465 IMFTDKMLQTLLEGVK 480 I +D++LQ L+ + Sbjct: 479 ITASDELLQDLVNIKR 494 >gi|237796175|ref|YP_002863727.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4 str. 657] gi|229264184|gb|ACQ55217.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4 str. 657] Length = 622 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ E S N V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWEDLSLNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 27/323 (8%) Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + D + + I+ + + T + I Sbjct: 301 AGEYTVTYYVGGDTKTEDKKRTLTINIESEEDFKRLDECRVLWTDKDGNAVQIENNSGKL 360 Query: 243 YTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + +G + + P G+++ + ++ + ++ QL+++A+ L S Sbjct: 361 ERDNNAIGILGNNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSV 419 Query: 302 SEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + G + N + + I +N + +P + G Sbjct: 420 NAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNS 478 Query: 361 FLWNVKNLAGYPDLINHYCDSFN-----------------------KNFIFDPVAGINTN 397 + K + + + + + Sbjct: 479 GEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNPNDEFEFNGTTLNTIGKDTNG 538 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 +T+ Y + IG L + +++ + ++ + GV++ EE + L++ Sbjct: 539 MTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHC 598 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y + K+I D++L ++ G+K Sbjct: 599 YQANAKIISTVDQLLDVVINGLK 621 >gi|168183196|ref|ZP_02617860.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf] gi|182673575|gb|EDT85536.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf] Length = 622 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ E S N V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWEDLSLNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 30/283 (10%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQIRDS 281 L+ + + NS + ++N I + G S+ + P G+++ + ++ Sbjct: 341 VLWTDKDGNAVQIENNSGKLERDNNAIGVLGNNGKSDFKNLKLFEPPSGELRGQMSVQ-Q 399 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ QL+++A+ L S + + + G + N + + I + Sbjct: 400 DIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIAL 459 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN----------------- 383 N + +P + G + K + + + Sbjct: 460 NKAIKEDPMKI-IAGVTPNSGEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNP 518 Query: 384 ------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + +T+ Y + IG L + +++ + ++ Sbjct: 519 NDEFEFNGTTLNTIGKDTNGMTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARD 578 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GV++ EE + L++ Y + K+I D++L ++ G+K Sbjct: 579 SVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 621 >gi|261219812|ref|ZP_05934093.1| FlgK [Brucella ceti B1/94] gi|261756172|ref|ZP_05999881.1| flagellar hook-associated protein [Brucella sp. F5/99] gi|265996847|ref|ZP_06109404.1| FlgK [Brucella ceti M490/95/1] gi|260918396|gb|EEX85049.1| FlgK [Brucella ceti B1/94] gi|261736156|gb|EEY24152.1| flagellar hook-associated protein [Brucella sp. F5/99] gi|262551144|gb|EEZ07305.1| FlgK [Brucella ceti M490/95/1] Length = 382 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 5/375 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGSYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D D+LDQRD LL+++S IGI+T++R +NDMV++ +G TLFET R + FE+ Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + +DGV +S + G++ LLQ+RD + P +Q QLDE+AR L+ Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355 F+E D + + + L GI+ TI + LRDGG Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360 Query: 356 SVSKKFLWNVKNLAG 370 + + +NV+ AG Sbjct: 361 ANGANYKYNVQGAAG 375 >gi|148380698|ref|YP_001255239.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 3502] gi|153932743|ref|YP_001384982.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 19397] gi|153935679|ref|YP_001388452.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. Hall] gi|226950152|ref|YP_002805243.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2 str. Kyoto] gi|148290182|emb|CAL84301.1| flagellar hook-associated protein 1 [Clostridium botulinum A str. ATCC 3502] gi|152928787|gb|ABS34287.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 19397] gi|152931593|gb|ABS37092.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. Hall] gi|226841472|gb|ACO84138.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2 str. Kyoto] Length = 622 Score = 159 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ E S N V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWEDLSVNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 30/283 (10%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQIRDS 281 L+ + + NS + ++N I + G S+ + P G+++ + ++ Sbjct: 341 VLWTDKDGNAVQIENNSGKLEKDNNAIGVLGNNSKSDFKNLKLFEPPSGELRGQMSVQ-Q 399 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ QL+++A+ L S + + + G + N + + I + Sbjct: 400 DIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIAL 459 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN----------------- 383 N + +P + G + K + + + Sbjct: 460 NKAIKEDPMKI-IAGVTPNSGEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNP 518 Query: 384 ------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + +T+ Y + IG L + +++ + ++ Sbjct: 519 NDEFEFNGTTLNTIGKDTNGMTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARD 578 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GV++ EE + L++ Y + K+I D++L ++ G+K Sbjct: 579 SVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 621 >gi|118444348|ref|YP_877945.1| flagellar hook-associated protein 1 [Clostridium novyi NT] gi|118134804|gb|ABK61848.1| flagellar hook-associated protein 1 [Clostridium novyi NT] Length = 676 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 62/526 (11%), Positives = 148/526 (28%), Gaps = 58/526 (11%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L + N + NI N++ K Y R+ + + Sbjct: 1 MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + D + +S +GQ + + E + ++ + ++ Sbjct: 61 PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGVSN 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I K D+ + +K+ +++ A + N + ++ K++ +A + I+ + Sbjct: 120 LIGKFFDAWQEVAKHPEGSNSRTVLVNQASALASELNHTHSQLVKVKENAQESIKQATFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L + +N I S + +D +D+RD+LL ++SE + + + Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSEKFNVVVEQDKFGSINLKPK 239 Query: 223 DGTTLFETV-PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 T+ + + N + + + N G Sbjct: 240 YTKTVDGNSEVANPLLVRKNPNDEVMRFSYVKSIEKKMEKNTTKIDVTGAPGKYETTCKI 299 Query: 282 VVPIFQNQLDEMARVLIGSFSEKD-----------PIAGNSENVPGLFIADGIKDLDNKL 330 ++ L + ++KD + + + Sbjct: 300 TYLKNGDKDRPATFNLNITSNKKDIHEAREEIEEKIRRLDQSRIIWSTSNKNDDSKNGLA 359 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I NP + + G + L + D + K F Sbjct: 360 VDKNGGVIGKNPVNFEDLALFDLKGDEYRGELKGFMTVQQDVDDYIEQMNKLAKGIAFSV 419 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDS---HDLHMKSQVVFNHISESYSNTVGVN---- 443 + ++ + ++ +D K+ + I GVN Sbjct: 420 NTLHSGKSSIGTVGTPTNNGVDVENADYMPFFVNGEKADKNYKIIDGKKVLYDGVNDITG 479 Query: 444 ----------LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L E I + + I +++ +++ Sbjct: 480 SSKINALKEVLDSETE--IT-----SAN---ISVNRQIMDDVMQIK 515 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 49/376 (13%), Positives = 115/376 (30%), Gaps = 8/376 (2%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 +Y KN +D ++ +KIR I SN Sbjct: 300 TYLKNGDKDRPATFNLNITSNKKDIHEAREEIEEKIRRLDQSRIIWSTSNKNDDSKNGLA 359 Query: 173 VNDA---IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 V+ I + D F + D ++ + + V + + + + G Sbjct: 360 VDKNGGVIGKNPVNFEDLALFDLKGDEYRGELKGFMTVQQDVDDYIEQMNKLAKGIAFSV 419 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALLQIRDSVVPIFQ 287 T T+ + + G K I + D V I Sbjct: 420 NTLHSGKSSIGTVGTPTNNGVDVENADYMPFFVNGEKADKNYKIIDGKKVLYDGVNDITG 479 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS- 346 + + ++ S +E + + +++ ++ Q + Sbjct: 480 SSKINALKEVLDSETEITSANISVNRQIMDDVMQIKTRINDDKFALAAKNTKDGEQDGAR 539 Query: 347 --NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + LRD + + + + D + G + + Y Sbjct: 540 ALAIAQLRDKLLKIQNITKRTTREEFIEQNGANKKLNKDITLGLDTITGDINGMKIDSYF 599 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 ++++ L ++ + + S+ + GV+L EE++ +++ + +Y + K+ Sbjct: 600 KDTVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGVSLNEEMANIVQYQHAYQANAKI 659 Query: 465 IMFTDKMLQTLLEGVK 480 I TD++L ++ G+K Sbjct: 660 IATTDQLLDVVINGLK 675 >gi|114320063|ref|YP_741746.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii MLHE-1] gi|114226457|gb|ABI56256.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii MLHE-1] Length = 695 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 50/377 (13%), Positives = 132/377 (35%), Gaps = 15/377 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + N + A + A+ NI N + + + R+ + V V Sbjct: 1 MSGTMNTGISGLMAAQRALAATSHNISNVNTEGFSRQRVEQSSRLPTGSGAGFVGNGVQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T R + + ++S + + + + AD + + + +L+ Sbjct: 61 DTVRRLADQNLIENVRNNTSEFERLDTMAELSGRVDNLLAD--ADAGLSPALQDFFAALD 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + V+ A+ + FNT R ++ + ++ ++S + + + Sbjct: 119 DLANDPNATTAKQQVLSAADTLATRFNTLDRRTAELEREVNQATRQQVSTMNQLSESVAD 178 Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + +D LDQRD LL++++EI + + + + + V G + Sbjct: 179 LNREIVREQNRVGQPPNDLLDQRDELLRRMAEIADVRVVAQTDGAVNVAVGTGQPVVNGT 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ E +F++ N S + G + L++ RD V+ ++L Sbjct: 239 TANRI--EIGPADGDPEQLDLFVETAGGRVNVTSNLTGGGLGGLMEFRDQVLNPVNDELG 296 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + + + + ++ AD ++ + + P + + Sbjct: 297 RIAVTVAETLNAQHNLGVQFDSGEPRPGADLFSVAPPRMTEVTNADPATRPAVGFDRERI 356 Query: 352 RDGGSVSKKFLWNVKNL 368 + + + Sbjct: 357 DQLTGQNYSLRYEGGDT 373 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 53/428 (12%), Positives = 126/428 (29%), Gaps = 23/428 (5%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS----LESYSK 116 D+VL+ + +G+ + + + + P + E + Sbjct: 282 EFRDQVLNPVNDELGRIAVTVAETLNAQHNLGVQFDSGEPRPGADLFSVAPPRMTEVTNA 341 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + +++ + E + + E + Sbjct: 342 DPATRPAVGFDRERIDQLTGQNYSLRYEGGDTWRLVNVDDAAGTRRFDLDDLETDDDGNY 401 Query: 177 IKFKTAS----KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + D + D + + + S R + V + E V Sbjct: 402 LLRADGLAINLGPDPDGDFSRGDRFDIQPTRLGASSIETRLSRPNQVAAASALISGEGVD 461 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 D + ++ DG + ++ +L D+ P F+ ++ + Sbjct: 462 GDGQSANTGTGQISPIQLTAADDGAIPLDETI------ELNFVLAGGDNDEPGFEAEVPD 515 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + F DP A + E + ++ Y P Sbjct: 516 GQGGMAAVFLPYDPEALDVEVGATFSLGAEPDAGADEDGF---------DGYLGLPGLAG 566 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ G + ++ + D N T E + +G + Sbjct: 567 RFTLSGVPREGDTFSIGGNRSAVGDNGNALAMVGLEDLETLDGGNTTFQEAYSSLVGDVG 626 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N + + + N E+ GVNL EE + +++ +Q+Y+ S ++I ++++ Sbjct: 627 ANTLRAQSNRDAQETLLNQSIEAREAVSGVNLDEEAANMLRFQQAYSASAQVIAVSNELF 686 Query: 473 QTLLEGVK 480 QTLL V+ Sbjct: 687 QTLLGAVQ 694 >gi|34103021|gb|AAQ59384.1| flagellar hook-associated protein FlgK [Chromobacterium violaceum ATCC 12472] Length = 438 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 65/469 (13%), Positives = 148/469 (31%), Gaps = 41/469 (8%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAH 70 + +NI N Y R+ + + V V R + + + + Sbjct: 1 MNTASQNIANQQTPGYSRQGVVLATQAPGAGDPLSAGYGVNVSNVRRFSDDYKNLLQWQA 60 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 +S +G + Q + E + +S + + +L + S + + + VI + Sbjct: 61 ASNVGSRAAAQPYFTQLEKVMG--SKGSSLSDGFDQFFAALNAASLD--SNTMRDQVIRS 116 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 A+ + Q FN + A ++ ++ + + L +N+ + A + Sbjct: 117 ADALAQRFNNLDGVLTSQLAAISEQRNATLTQINSATANLAALNEKLMSAKAQGINTSGL 176 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 D+RD + +S +I + + + + + +G L + Sbjct: 177 EDERDRQVDALSSLIEVRVVAQPDGSKSISLKNGLPLVTGDSAATLSSEAQPDGSQQ--- 233 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + + G++ L + + Q Q+ +A L +++ + Sbjct: 234 -LKLAFGTEKYAMPGGDLGGQLGGLNRFETENLRPVQAQVRTLAGELATRVNDQLAKGYD 292 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 PG + L + L + A Sbjct: 293 MNGQPGKPLFQYD---------------------AGAAHGLLQTTGILSAELGFSADPAK 331 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + N K F NVTL + IG L + + + V+ Sbjct: 332 PGNNDNLREVLKVKQQAFPLAG--IGNVTLGDAYSQMIGHLAISSQQNSSSLDTANVIRA 389 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ +T GV EE LI+ ++ Y + K+I +++ ++ L + Sbjct: 390 EAEKNWQSTSGVQRDEEAVSLIEYQKMYQANMKVIAVANQLFESTLAIL 438 >gi|255597140|ref|XP_002536705.1| Flagellar hook-associated protein, putative [Ricinus communis] gi|223518821|gb|EEF25678.1| Flagellar hook-associated protein, putative [Ricinus communis] Length = 439 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 68/472 (14%), Positives = 155/472 (32%), Gaps = 42/472 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------ISPENVT 51 M++ A + A ++ +N+ N Y R+ + + V Sbjct: 1 MTIT---YNALSGALAAQAALNTVSQNLANVQTPGYTRQGVLLQATASDPGTLSAGNGVK 57 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + + + +S +G Q + + E + +DD S ++ I +L Sbjct: 58 IGSLLRFSNTYQLQQMWRANSELGAHSQAQPYLSALEKVMSDDKS--SISYGIDNFFKAL 115 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + + L + VI + + Q FN+ +++ + + +L L+ + Sbjct: 116 NAAGVDPTSGPLRQQVITTGDSMAQQFNSIYNVTSNQVISVNQQQQAILPSLNESLAGIA 175 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++N I S + +D+R+ L+ ++ +G+ + N + V G L + Sbjct: 176 LLNKQIVSVDKSGTNTSALMDKREQLIDSVASQVGVEVVYNPNGSVNVSLKSGEPLVMSD 235 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 SYT S S + + V+ G++ L + + + Q + Sbjct: 236 SSS-----TVSYTTVSGSPVLQLSYANVTFALDDTKVGGQLGGLGDYKQNTLIPLQTSIK 290 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E+A + + + V G + + Sbjct: 291 ELADQVAKKINSALAGGFTAPGVAGQPMFEDPPTTGIMQV-------------------- 330 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + ++ G + + D + + G V L + +G L Sbjct: 331 -VSGFTTADLAFSSDGTPGDSGNLQNLVDIKGQTVTLSSLGG--APVILGDADTQLVGKL 387 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + L + V + + + +T VN EE LI+ + Y + K Sbjct: 388 GIDSQQNQSLLATATTVRSQSEDDWKSTSAVNSDEEGINLIEFQSMYQANMK 439 >gi|227876747|ref|ZP_03994856.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|306817694|ref|ZP_07451436.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] gi|227842644|gb|EEJ52844.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|304649508|gb|EFM46791.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] Length = 466 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 49/484 (10%), Positives = 118/484 (24%), Gaps = 24/484 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + + T + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ Q L +++ + N D K + Sbjct: 54 APRLNERGGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQV 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + Q VQ +AD + L + + Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWKADTKGIVNASGQPGNITLPLTQSMKANPTTQVI 173 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D L S + V+ D + P +I + + Sbjct: 174 FGGNMPA-----DQLYNDPSMQNPNTAGNAKQFAQVLVVHD----DKGNPHEILMKFTRT 224 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + G S+ + + L I N+ D + Sbjct: 225 NIPAPAGGKPGLGGAPGSTWKVQFYDSKSYEQLKDANKEKALIQINKKDSVELSFDSQGQ 284 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET------ICVNPQYRSNPSFLRDGGS 356 D + +P + D + + + Y +F D Sbjct: 285 LSDADKEALKALPFEINEYKVNDDKTDVTKTKVANDEAKLNLSNLTGYAGLKNFAVDQVD 344 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + + + ++ A + + L + + ++E S Sbjct: 345 GNPAGTLTGFGVEADGTIRGTFSNGSSRALAKIATASFSNPLGLEKAGASY--FVESGNS 402 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+L E + LI ++ + + ++I +D++LQ L+ Sbjct: 403 GQPQIGEPGSGTRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELV 462 Query: 477 EGVK 480 + Sbjct: 463 SMKR 466 >gi|187478191|ref|YP_786215.1| flagellar hook-associated protein FlgK [Bordetella avium 197N] gi|115422777|emb|CAJ49305.1| flagellar hook-associated protein 1 [Bordetella avium 197N] Length = 550 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 83/551 (15%), Positives = 171/551 (31%), Gaps = 80/551 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++N A N + + NI NA Y R+ +T+ + V V T Sbjct: 2 NLYNLALTGLNASQAGLSVTSHNINNAATDGYSRQRVVTSTAGASATSQGYFGRGVQVDT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + K L S + Q + AD + +S + SL S Sbjct: 62 VKRQFDGFLYKQLVGASGSAAQLSTQLDQMTAVNNLFAD--RTVGVSAALSGMFSSLNSA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + +V N + +++Q R + +I ++ + +L + +N Sbjct: 120 ASAPADPAVRQDLTGKTNSLVAQINGAYQQLQNQRDGLNTQISTTVTQVNSYLERINDLN 179 Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I S +D +DQRD L ++E++G+ + ++ + G T+ Sbjct: 180 QQITIARGKSGQAPNDLMDQRDQALADLNELVGVRWYEQGDSI-NISLQSGQTVLAGRTI 238 Query: 234 DINFEKMNSYTVTSESNPIFI----DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ T + + G + V GK+ LL R+S + Q+Q Sbjct: 239 YPLAAVNSAADPTRVALAYSMPDGNGGTQTIELKDEQVNGGKLGGLLSFRNSALDAVQDQ 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIA----------------------------- 320 L ++A L +F+E++ + G + Sbjct: 299 LGQLAIGLALAFNEQNAKGKDLSGQDGADVFALKAPSALPNAKNAGTGDISSRYVKASDI 358 Query: 321 --------------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + T + + ++ G + W + Sbjct: 359 KPGGYKIEFDAAANSYTVTRLSDNSNVAYTTDVNTGELMFDGVAIQMAGVPADGDTWQFQ 418 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL--------------- 411 ++ NK + D G + LE+A+ + Sbjct: 419 PTRDAARDLSVVLSDPNKWALADAAGGTSNGQNGLEFAKLQTAKVLNNGTTSLGEQFSRL 478 Query: 412 ----EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + +YS+ GVN+ EE L ++ Y S K++ Sbjct: 479 VNNVGVQTQQVKTAKTAADNLVKQQATAYSSVSGVNMNEEYVSLAVYQEQYQASAKVLSV 538 Query: 468 TDKMLQTLLEG 478 + TLL Sbjct: 539 AGVLFDTLLGL 549 >gi|322807049|emb|CBZ04623.1| flagellar hook-associated protein FlgK [Clostridium botulinum H04402 065] Length = 630 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 56/384 (14%), Positives = 110/384 (28%), Gaps = 21/384 (5%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D G F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGHFSSRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S N V++ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWHDLSLNAQGSNAKSVVMEQASALADELNHTFNELSKLKENTQGEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L ++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSILDQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGINLSTS 239 Query: 223 DGTTLFETVPRDINFEKM--NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + ++ + D S + P GK + Sbjct: 240 NHAKNYQDKTSPFGGTPPVVDGKDANLVQRVDPEDIYRFSYIKDIKSPAGKKPGQPGEYE 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + E + I N + K LD + V Sbjct: 300 VTYYVGGDTKSESNKRTITVTIGNPKDPNNPTPEELKEAEEQFKRLDEGRVLWTDKNGDV 359 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWN 364 ++ + S+ + Sbjct: 360 VKINDNSSADANANKSIGTIGSGS 383 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 55/459 (11%), Positives = 135/459 (29%), Gaps = 43/459 (9%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + +S + Q L ++ + + + + Sbjct: 173 IQQTVFEVNSILDQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFE 232 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 N + Q+ + + D + + + + K Sbjct: 233 GINLSTSNHAKNYQDKTSPFGGTPPVVDGKDANLVQRVDPEDIYRFSYIKDIKSPAGKKP 292 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD--------------GTTLF 228 + ++ + S I+ + N D T + G L+ Sbjct: 293 GQPGEYEVTYYVGGDTKSESNKRTITVTIGNPKDPNNPTPEELKEAEEQFKRLDEGRVLW 352 Query: 229 ETVPRDI---NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 D+ N I + + P G+++ + +++ + Sbjct: 353 TDKNGDVVKINDNSSADANANKSIGTIGSGSCDFKNLKLFEPPSGELRGQMSVQEE-IDD 411 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +Q QL+++A+ L S + + + G N + +E I +NP Sbjct: 412 YQEQLNKLAKALAFSVNAVHTQSLDPANPKDGALNFFINGQNPNNEMEITAENIAINPDI 471 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---------- 394 + +P + G + + K + + + + N D + Sbjct: 472 KKDPMKIIT-GVIPNSGEGDGKRALAISQIKDVFMSIQDINKNTDRETFLKEFFKQNDEF 530 Query: 395 -------------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 +T+ Y + IG L + +++ + + +S + G Sbjct: 531 EFNGTKLNTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATLLKGFQQSRDSVSG 590 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + L++ Y + K+I D++L ++ G+K Sbjct: 591 VSLDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 629 >gi|324325756|gb|ADY21016.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar finitimus YBT-020] Length = 432 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V ++ + K + S + S + E M N S + + Sbjct: 60 GVQTLSVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAE 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + ++ + +NP++ ++ Sbjct: 286 NLEELMSSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDEDYKDG-------------------------LSYKKALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S+ + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|254519436|ref|ZP_05131492.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA] gi|226913185|gb|EEH98386.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA] Length = 611 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 77/611 (12%), Positives = 187/611 (30%), Gaps = 132/611 (21%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L + FN A+ N + NI N++ Y R+ S Sbjct: 1 MSGLFSTFNIAKRGMNVQQKSIDVTSHNIANSNTVGYSRQRAKIETSRPFGGTSMGSSVQ 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96 + N D + S+ +G+ + +F E + + Sbjct: 61 AGQLGTGAQIRAIERVRDNFLDYQVRGESAVLGKYDIRNNFLYEVESVFNEPSETGISTL 120 Query: 97 ---------------NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 N+S + + + + + N + L ++ + + + Sbjct: 121 MGKFFDSFQELSKQPNSSNARTVVAQQTAALTDALNATYTKLESLQVNAQDMLKSSVTEV 180 Query: 142 AREVQKIRADADKEIELEI--SNLRRFLSELTVVNDAIKFK------------------- 180 ++++ + I + + + + + ++ D + +K Sbjct: 181 NSILEQLDRVNQEIISVTVSGNTPNDLMDKRDLLLDQLSYKFGIQVDKREFNGIDLKPTE 240 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T S + + + S I + S+ +V Y +G E+ + + Sbjct: 241 TGSMKAPLLVNSSPNGDVARFSYITDVELDSSDFSGKTYIVTYYKNGNMDSESNRQTLKV 300 Query: 238 EKMNS-----------YTVTSESNPIFIDGVVVSSNQGSAVP--------KGKIKALLQI 278 + + DG + + + G + L+ + Sbjct: 301 TGITAEQAKEIKDNRIIWADKSGQAARGDGYPIKNGDVISYSELMMFKPENGNVNGLVSV 360 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------- 328 + + + NQL+++A+ + S + + N D + N Sbjct: 361 Q-KDIEDYMNQLNKLAKSIAFSVNAIHSGIEDPLNNISGAEKDFMPFFVNKDVAKYKSNG 419 Query: 329 ----------KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 ++ I VN + + ++ + N+ G D Sbjct: 420 ILSNLDETLVGEVGITAKNISVNKEILEDVMKIKTKTHDDLFPYTHENNMDGDSDGSRAL 479 Query: 379 CDSF----------------NKNFIFDPVAGINT-------------NVTLLEYARNSIG 409 + ++ +FD G N+ + + Y +++I Sbjct: 480 AIAQLRDSLIRIQDINETVISRKDMFDKNKGGNSLINNGLKIENSTSGMKMDSYFKDTID 539 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 L ++ + + + I ES ++ GV+L EE++ L++ + +YN + K+I D Sbjct: 540 RLGVQAQEAQRMVTNQEDLLYSIEESRASVSGVSLDEEMANLVQFQHAYNANAKIISTVD 599 Query: 470 KMLQTLLEGVK 480 ++L+ ++ G+K Sbjct: 600 ELLEVIINGLK 610 >gi|315654586|ref|ZP_07907492.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] gi|315491050|gb|EFU80669.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] Length = 487 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 49/496 (9%), Positives = 127/496 (25%), Gaps = 27/496 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61 +L + + NI N + + T + V N+ Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 62 -----------MFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTHYISKL 107 + + + + + Q ++ + + S Sbjct: 61 GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGTSVYTRNGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + + + + + + K + I Sbjct: 121 GVDAQGQLVAADGSFVQGWMGNEDGTINASGTPGHITLPLTKTVEGKPTKNVIYGGNIPA 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 D I + QR ++ + ++ + Sbjct: 181 -------DQIYMDPTKSKTSPSNAFQRSQIVHAYDDKGNPHDVLLTFARADFAKPGSQPV 233 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP--- 284 +E D K + T E + + QG V G + V+ Sbjct: 234 WELRAYDAKAYKELNETQREELTSKNGARIELKVKQGKTVKLGNSTVAPVAKGGVLTFQF 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +LD + L+ + + IA N + I+ + + Sbjct: 294 GTNGKLDTESEQLLKTVNFTLDQLNVVPATKPGEIAKTEVVTPNVTKEPITLDLSAMTGF 353 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +F + + ++ + + + N+ VA + L + Sbjct: 354 GGVNNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAG 413 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + ++E S + ++ V+L E + LI ++ + ++++ Sbjct: 414 SSY--FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRV 471 Query: 465 IMFTDKMLQTLLEGVK 480 I +D++LQ L+ + Sbjct: 472 ITTSDEILQELVNMKR 487 >gi|114565761|ref|YP_752915.1| flagellar hook-associated protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336696|gb|ABI67544.1| Flagellar hook-associated protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 838 Score = 157 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 52/428 (12%), Positives = 135/428 (31%), Gaps = 24/428 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS + NI NA+ + R+ + Sbjct: 1 MSNFFGLEIGKRSVLMHQTALNITGHNIANANTPGFARQAPSIVTTSPFHAPMLNNANRV 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + D + + G + +Q E + ++ + Sbjct: 61 GQLGTGVDIAQVKRIRDEFLDSQIRNETRVSGYWQSMQETLDRVEAIL-NEPSEDGLRGV 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ + S N + + V+ + + FN + ++Q +R D + +I+++ ++ Sbjct: 120 MDMFWEAWQDLSLNPESESVRSVVVQRGMALAEAFNHTYSQLQDLRVDVNDQIKIKAHDV 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ +N I + + +D D+RD+L++++SEI + N+ + V +D Sbjct: 180 NSIAQQIAALNRQIAAVSCAGKQPNDLKDKRDLLVEQLSEIAEVRIYNDKNDMVAVQLAD 239 Query: 224 GTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + ++ EK N S + G + + + Sbjct: 240 RMLVQGVDYIELAEEKDNQGMYMLVWADSRTKARISGGQLGALLDARGQTNLPEENQPSE 299 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++P L+ +A+ ++ + +E + N + Sbjct: 300 YKEIIPNMIEDLNMLAKTIMVNTNELHRGGYSLANKKSQVPDGSNFFKMPEYADTYENWA 359 Query: 339 CVNPQYRSNPSFLRDGGSVSKKF-LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 R ++ + S++ N + D N + K+ + P + T Sbjct: 360 KFMAVTREIQDDVKKIAAASRRTWDTEGGNKENFGDGGNALKIAQLKHSLNSPQFKVKTE 419 Query: 398 VTLLEYAR 405 ++++ Sbjct: 420 GLNIDFSS 427 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/317 (10%), Positives = 88/317 (27%), Gaps = 11/317 (3%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 LS L N D L S I IS++ + + Sbjct: 527 NAKLSLLQSYNQKPASSIFGDGRLQQPSDP--NLAINASIEITISSVNNFSGQVNYTYVS 584 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + +Y +E + S + A L++ D + Sbjct: 585 HEYDLDGNYNKVTGSFTLNYGGAAEQSITIGSLTTTISGLDGLSSEKSGVAELKVGDKGI 644 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + N + + N V Sbjct: 645 LALTAAR--------EVAIPYQQVDINFNFNSDRKVLQSNCFVFNNGVLDPQAPDTVKTN 696 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS-FNKNFIFDPVAGINTNVTLLE 402 + + S ++ L+ + + + + + T + Sbjct: 697 ELHFFTMNDNRNSNLFGRSYDGYIEITNGILVTAEPAAYLSYYEGDSGNSDMVEDATTDD 756 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + R+ ++ + +++ + + + + GV+L EE++ +IK + ++N ++ Sbjct: 757 FWRSITANTGVVSQEAQRMVKNQEILLSELQNKWESISGVSLDEEMTNMIKFQHAFNAAS 816 Query: 463 KLIMFTDKMLQTLLEGV 479 + I D+ L+ ++ + Sbjct: 817 RFITGIDEGLEVIINRM 833 >gi|315657509|ref|ZP_07910391.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491981|gb|EFU81590.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 484 Score = 157 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 50/493 (10%), Positives = 122/493 (24%), Gaps = 24/493 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + + T + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ Q L +++ + + D K + Sbjct: 54 APRLNERGGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSV 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + Q VQ D D I + L V K Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKVI 173 Query: 183 SKHDAHDFLDQRDVLLQKIS--------EIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + D K S +I+ N +D+++ + Sbjct: 174 YGGNIPADQIYMDPTGSKTSPDNAFQRSQIVHAYDDKGNPHDVLLTFARNDFANPGSEPM 233 Query: 235 INFEKMNSYT----VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ ++ + DG + + I + + Sbjct: 234 WELRAYDANVFKELDETQREKLTTDGGARIALEVEDGGSVSIGGSKVKPADGDGVLNFKF 293 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---LDNKLCQGISETICVNPQYRSN 347 + S + + V A N Q I+ + + Sbjct: 294 KTDGTLDEDSLKAMKTVKFKLDQVNVKETAVPKVSEILQPNVTKQPINLDLSALTGFGGV 353 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 +F + + ++ + + + N+ VA + L + + Sbjct: 354 NNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSY 413 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++E S + ++ V+L E + LI ++ + ++++I Sbjct: 414 --FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITT 471 Query: 468 TDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 472 SDEILQELVNMKR 484 >gi|183222558|ref|YP_001840554.1| flagellar hook-associated protein FlgK [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912593|ref|YP_001964148.1| flagellar hook-associated protein FlgK [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777269|gb|ABZ95570.1| Endoflagellar hook junction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780980|gb|ABZ99278.1| Flagellar hook-associated protein 1 (HAP1) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 637 Score = 157 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 62/459 (13%), Positives = 145/459 (31%), Gaps = 32/459 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + Q + NI NADNK+Y R+ + Sbjct: 3 STFQGIEIGKRGLSVHQQAIQTTGHNISNADNKHYARQRVVMNSMDPIYDPAFNRAEVPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + N D + SS + E + ++ + + Sbjct: 63 QIGQGVKISEIERVRDNFIDDRIIDSSSLKEYWGKKNDYLYQVETVF-NEPTGTTLRSMM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S E S E V + AE + R++ +R +++EIE ++++L Sbjct: 122 DQFWSSWEDLSNYPEETAHRAVVQEKAEALGSRMEDVYRKLSLLRDQSNREIEAKVNHLN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + +N+ I A + +D LD+RD LLQ+++ + I+ ++++++V+ Sbjct: 182 TVSENIKSLNEKITKSQALGDNPNDLLDRRDELLQELAGMADITIGRSDDDELMVFIGQQ 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + I+ + +N +D + + +G I+AL +IRD ++ Sbjct: 242 ILIQGQKVHKIDLV-------GNPNNDGLLDLKWSGTGDTVLLRQGSIQALYEIRDRILV 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N +D +A + +E + + N I + Sbjct: 295 EKINAVDALAINAMDVINEIHKDGFGLNGKTNVNFFEQRALATNTF-----GEIDTDGDG 349 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT--LLE 402 ++ + + + ++G + + + V + Sbjct: 350 LNDKTAVFRVTGRTSLDPDRPIGISGTMRFLKASPGGETEILVPYSKDDTLNAVIKRINR 409 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + ++ + + + + G Sbjct: 410 SETGVVAYMSHDNQLALKSTTNPNDKKENFMIRHLEDSG 448 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 51/384 (13%), Positives = 116/384 (30%), Gaps = 22/384 (5%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE--- 169 N + D L + V S + + +IR E + L + Sbjct: 253 DLVGNPNNDGLLDLKWSGTGDTVLLRQGSIQALYEIRDRILVEKINAVDALAINAMDVIN 312 Query: 170 ---------LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + A + +D L + + ++ + D + Sbjct: 313 EIHKDGFGLNGKTNVNFFEQRALATNTFGEIDTDGDGLNDKTAVFRVTGRTSLDPDRPIG 372 Query: 221 TSDGT-TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQI 278 S L + + S T + I+ + + +K+ Sbjct: 373 ISGTMRFLKASPGGETEILVPYSKDDTLNAVIKRINRSETGVVAYMSHDNQLALKSTTNP 432 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG-----LFIADGIKDLDNKLCQG 333 D L++ +L+G + +D+ Sbjct: 433 NDKKENFMIRHLEDSGELLVGLTGILTASGVSGSFDYRKIGEINKFQANAQDITLTPMYH 492 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 S ++ R+NP+ + G + + G D N + + + Sbjct: 493 PSSFFKMSEDVRNNPANIAAGRGKDVNGSGDYNSPNGQKDGSNALLIA---AALREKPVM 549 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + T ++ + I L ++ + + + + +GVNL EE++ +++ Sbjct: 550 FDYSKTTDDFYNSLISRLGTEAREAKQEYTTQNELMVELENMRQSVMGVNLDEEMANMVQ 609 Query: 454 VEQSYNISNKLIMFTDKMLQTLLE 477 +QSYN S ++I ++ML T++ Sbjct: 610 FQQSYNASARMISTLNEMLDTIIN 633 >gi|120554039|ref|YP_958390.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8] gi|120323888|gb|ABM18203.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8] Length = 688 Score = 157 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 123/371 (33%), Gaps = 16/371 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52 + + + + NI NA+ Y R++ V+V Sbjct: 1 MAGLIGIGLSGVLGYQAALNTTANNITNANTPGYSRQEVQFETQEGRRTGAGTIGSGVSV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L S+ G+Q + + + + + ++ +++ Sbjct: 61 ADIRRLADAYLSQQLREDSTLFGEQNAFNAELTRLDNLLGGE--DTGLNKALNNFFSAMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + V+ A+++V F +E + R +++ + + L + Sbjct: 119 NAAEDPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQGVKDANTLLKSIAE 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N AI A + + +D+RD L+++SE++ I + + V S+G +L Sbjct: 179 LNLAISESPGLAQGREPLELMDKRDEKLRQLSELVSIRVTEVEGSQVNVSLSNGLSLVTG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++ T + G + + GK+ L + + ++L Sbjct: 239 ANAAEFATRSSAKDPTRLEFTLTSGGRTL--LVDEQIQGGKLGGLRAFDEMALKPAFDEL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A + + + + I + E G + L + + + Sbjct: 297 GRLAIAISAAINHQHEIGMDLEGDLGGNFFSDVNSLAVQRSRVVPNGNNDRTTTGQLAVE 356 Query: 351 LRDGGSVSKKF 361 + D + Sbjct: 357 ITDSSQLPAGT 367 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 44/377 (11%), Positives = 96/377 (25%), Gaps = 12/377 (3%) Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S + S + + T + ++ + + L Sbjct: 323 GNFFSDVNSLAVQRSRVVPNGNNDRTTTGQLAVEITDSSQLPAGTWELQFSGDGRSYELI 382 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +S TV + S+ + F + + + I +M + Sbjct: 383 DTISGDTVKQGRLPDPVQSEINMPGFNIRVEGGEFNAGDKYLIQPSRNAAENMKLNIRRE 442 Query: 225 TTLFETVPRDINFEKMNSYTVT-SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L P + + N T T ++ N + + + G Q D + Sbjct: 443 EDLAFASPVRASSDDGNLGTGTINQGNMLNVRNPNTGALLDDFQNSG------QFADGPI 496 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 I + S + + + G D + Q Sbjct: 497 TITFTNDGAGTIEYVVSNNSGPLFTSANVDNDGDGTTDVYDPQKINQIFSTRPEDESSGQ 556 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 YR + + F + + + + + E Sbjct: 557 YRGFVFEITGEPADGDVFTIDFNRNGVSDNRNAELLAALGTKNTLN-----GGSQNFTEG 611 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + S + + + GVNL EE LI+ + +YN S + Sbjct: 612 YAGLVEDIGVKTRQSQLDKDAGATLLEQSTNQRESVSGVNLDEEAGKLIQYQAAYNASAQ 671 Query: 464 LIMFTDKMLQTLLEGVK 480 ++ + TLL+ + Sbjct: 672 VMSVAQDLFNTLLQSFR 688 >gi|220913741|ref|YP_002489050.1| flagellar hook-associated protein FlgK [Arthrobacter chlorophenolicus A6] gi|219860619|gb|ACL40961.1| flagellar hook-associated protein FlgK [Arthrobacter chlorophenolicus A6] Length = 472 Score = 157 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 55/492 (11%), Positives = 127/492 (25%), Gaps = 42/492 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 MS N A A Q +NI NA + Y R+ + Sbjct: 1 MSTFGGLNTAFLGLTAARQGINLAGQNIANAGTEGYTRQRIEQSPIGAPSASGLTAPGVR 60 Query: 48 --ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V+V + D + + ++ G + + E + N T + Sbjct: 61 PGQGVSVDGISRLGNSFLDAGVRSTAAQAGFTSIRSTELQRIEETLQ-EPGENGITTALQ 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + S + E ++ A + + R + E + + Sbjct: 120 DFWGAWQGVSNHPGESAPAAVLLQAATTLAGKVSAGYRAIDAQWTQVRSEAAANTATVND 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 +++ N I+ A A++ +D R+ ++ I+ + G + + V Sbjct: 180 AAAQVAGYNATIRSVLAGGGSANELIDARNSAIETIAALAGGTVRENADGTADVLIGGNA 239 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + R ++ I G + + G L R + Sbjct: 240 LVSGSSYRTLSL-----------GGQTTITGAGTAVQVEWSDRPGNPAGLDGGRIAGAVS 288 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + A I + + + + + Sbjct: 289 LLSPAAGGAGGAIAEAAASYDSFASELAAKVNAVHRTGQSTTGAANLDFFASAPGGSPAM 348 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S RD ++ D + + + + Sbjct: 349 SLRVVPRDAAGIATGAAVAGTLDGSVADSLAQL---------------GTSATSPDKAWA 393 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + S + V+L EE L+ + +Y + +++ Sbjct: 394 AVVTGIGVLSRSAQQHEQLSAAASVSARGHRDSGASVSLDEENISLLTNQHAYQAAARVM 453 Query: 466 MFTDKMLQTLLE 477 D+ L L+ Sbjct: 454 TAVDEALDVLIN 465 >gi|217959222|ref|YP_002337770.1| flagellar hook-associated protein FlgK [Bacillus cereus AH187] gi|217064765|gb|ACJ79015.1| putative flagellar hook-associated protein [Bacillus cereus AH187] Length = 432 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAD 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANQKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + ++ + +NP++ ++ Sbjct: 286 NLEELMSSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K + ++ + I Sbjct: 326 SKMKISAETANKLAGITDEVYKDG-------------------------LSYKKALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S+ + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|312876506|ref|ZP_07736489.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796717|gb|EFR13063.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] Length = 494 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 54/497 (10%), Positives = 128/497 (25%), Gaps = 22/497 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + + ++ + +I Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPENKQIDTTKSPSKINILAFPTLSPQATDQIILDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR---NNNDMVVYTSD 223 S +V K D + L DV + + + + N + +S Sbjct: 181 DSNKKIVEIQYDNDGNGKIDKDEKLTGEDVYNKIKDPSMSVLDKYQKILNKIGDDMKSSI 240 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +F++ + +++ I ID S N + A Sbjct: 241 SFRIFDSQGGEHTLSLTFVKYDSNKWFWI-IDSPRKSDNYAKYLDDNIEGANTNFIAFGR 299 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 F ++ + L G+ ++ L + N Q Sbjct: 300 IEFDSKGQVINVQLEGAQNQNSNKFTIKFKNNSLDEITFDTSIGNTDETLNIFKFDYIKQ 359 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 Y S S N+ +I Y + N+ VA L Sbjct: 360 YSLGSSIRTKKISGYAAGSLQGFNVDATGKIIGVYSNGLNQIIGQIAVATFANPAGLQRI 419 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++ S ++ + I + V+L +E + +I ++ Y + + Sbjct: 420 GDNL--YINTPNSGDPEIGIPGTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 477 Query: 464 LIMFTDKMLQTLLEGVK 480 +I +D++LQ L+ + Sbjct: 478 VITASDELLQDLVNIKR 494 >gi|300716224|ref|YP_003741027.1| flagellar hook-filament junction protein 1 [Erwinia billingiae Eb661] gi|299062060|emb|CAX59176.1| Flagellar hook-filament junction protein 1 [Erwinia billingiae Eb661] Length = 550 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 75/551 (13%), Positives = 162/551 (29%), Gaps = 76/551 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N A + N AS + NI N Y R+ T+ + V+V Sbjct: 1 MSNLINTALSGINAASAALNTTSNNISNYSVAGYSRQTTVLAQAGSTLSGTNYYGNGVSV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A S+ + + + M N+ + I S++ Sbjct: 61 ASVNREYDAFITNQLRAASTQSSALTTQYNQLSNIDDMF--SSTTNTLSTNIQDFFSSIQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + V+ A +V S ++ + + + + + + + ++ Sbjct: 119 TLVSNADDASARQAVLGKASGLVNQLQVSDTYLRNLDSSLNTSVTSTVDQVNGYAKQIAN 178 Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN I + + +D LDQRD L+ ++ ++G++ ++ + +G +L Sbjct: 179 VNQQIAKLKGSGDGNPPNDLLDQRDQLVSNLNNLVGVTVSQQDGGSYNISIGNGISLVTG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S + + +S + L S + +NQL Sbjct: 239 DSYNTLAAVPSSSDPSRLTIASVNPTTGATSEIPEKLVTTGSLGGLLAFRSDLDNTRNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIAD----------------------------- 321 ++A L SF+ + +S G + Sbjct: 299 GQLAMALGSSFNTQHEAGYDSNGDAGEAFFNLGSPAVISNTKNTTTASVSAQWTDTSKVQ 358 Query: 322 -----GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 D N S+ + P ++ + + + L+ Sbjct: 359 ASNYKVSYDGTNWSVTRNSDNASITPTMGTDTNGNSTLSFDGLQLTVSGSPAKNDSFLVK 418 Query: 377 HYCDSFNKNFIFDPVAG----------------------------INTNVTLLEYARNSI 408 D + I + TL + + + Sbjct: 419 PVADVVVNMGVNITDESKVAAAGADDGVSDNTNAQSLLDLQTKNVITGSKTLTQSYASMV 478 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S+ V ++ + GVNL EE L + +Q Y + ++I Sbjct: 479 ADIGNKTSNLETTSTTQTNVVTQLTNQQQSISGVNLDEEYGNLTRYQQYYTANAQVIQTA 538 Query: 469 DKMLQTLLEGV 479 + L+ V Sbjct: 539 STIFDALISAV 549 >gi|42780831|ref|NP_978078.1| flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10987] gi|222095362|ref|YP_002529422.1| flagellar hook-associated protein flgk [Bacillus cereus Q1] gi|42736751|gb|AAS40686.1| flagellar hook-associated protein, putative [Bacillus cereus ATCC 10987] gi|221239420|gb|ACM12130.1| flagellar hook-associated protein 1 [Bacillus cereus Q1] Length = 432 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 148/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAD 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANQKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + ++ + +NP++ ++ Sbjct: 286 NLEELMGSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDEDYKDG-------------------------LSYKKALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S+ + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|302872562|ref|YP_003841198.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575421|gb|ADL43212.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 489 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 46/495 (9%), Positives = 123/495 (24%), Gaps = 23/495 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++L + I + D + T T + Sbjct: 181 SADLKAYSGQIDKYEDLLNVPADSKYS--TSFKIYDSQGKEHTFQLTFVKTGDNTWNWYV 238 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + +++ + + + + G+ + D Sbjct: 239 DAPRIKKNVGTAQNPDEKYVYVDEMLDANNDYDKFIATGTITFGQAG--KVLDDENTSDK 296 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 L +I + I ++ V + + D I+ + Q+ + Sbjct: 297 VEGLSVTGGRIINTTDGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNIAFFLKNITQFGN 356 Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S +R + N+ + Y + N+ VA L Sbjct: 357 MESSIRVAQMTGYAAGNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGD 416 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N ++ S ++ IS+ V+L +E + +I ++ Y + ++I Sbjct: 417 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 474 Query: 466 MFTDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 475 TASDELLQDLVNIKR 489 >gi|317052131|ref|YP_004113247.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum S5] gi|316947215|gb|ADU66691.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum S5] Length = 569 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 76/572 (13%), Positives = 175/572 (30%), Gaps = 98/572 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M N + + ++ N+ N + + + R+ + + + V Sbjct: 1 MGTFQSLNVGLSGVLASQSALMTVGHNLSNMNTEGFSRQRVVLQANQPLRIANLQYGQGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + + L + GQ EM+ ++ + +++ DS Sbjct: 61 NLNQVQRVHDEYVQQSLRTAITKGGQYEANYMAYNEIEMLF-NETEGMGLGYSLTQFWDS 119 Query: 111 LESYSKNLSEDIL-----GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + ++ TVI++A ++ + +++ ++A ++ ++++ Sbjct: 120 WHDLANAPTDTSQEAASKRSTVIESANFLINTIQGTYQQLNDLQAQYTGRVDSMVNDVNS 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 L L +N I +A + AHD LDQRD++L K++E I I + V+ DG Sbjct: 180 QLQSLATLNTQIAKTSAHGNPAHDLLDQRDMILNKLAEYIDIKVDIDPQGQATVFF-DGK 238 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TL + K T S +F +S + G+I A +++RD +P Sbjct: 239 TLVDRDYAAKLINKR---TGEFSSELLFESTSGHTSKITNFSNNGQIGAYMEMRDKTIPG 295 Query: 286 FQNQLDEMARVLIGSFSEKDPIA-------------------GNSENVPGLFIADGIKDL 326 + +LD+++R +I ++ + I +G L Sbjct: 296 YIEKLDDLSRTIIEEVNKVHANGMVTKPFGAVSSQYSVENSRTPLNDNTPFQIQNGSFQL 355 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 G + + + + N N Sbjct: 356 KVFDPAGGELQTFEIRINEGDSLRQIAMKLDQADGVAEGGLFSASINADNQLEIRGNNGN 415 Query: 387 IFDPVAGINTNVT-----------------LLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 F + +T + Y L + S + + ++ Sbjct: 416 TFVLYNDTSNALTAIGLNTFFKGHDAKSIGVNSYVAEDTTRLATSFSGEPGDNRNANLIA 475 Query: 430 NHISESYSNTVG-----------------VNLQE-ELSFLIKVE---------------- 455 + + +N+ E + LI+ + Sbjct: 476 ELRNAKVMGGMTIGENYNHFVSKIGMDVRINIDSLETTQLIRFQIEVKRESISGVNENEE 535 Query: 456 --------QSYNISNKLIMFTDKMLQTLLEGV 479 +S+ S++ I D++L ++ + Sbjct: 536 LTNMLKFQRSFEASSRFITTIDRLLDNIVNRM 567 >gi|42524754|ref|NP_970134.1| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100] gi|39576964|emb|CAE78193.1| flgE [Bdellovibrio bacteriovorus HD100] Length = 427 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 49/485 (10%), Positives = 114/485 (23%), Gaps = 63/485 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQR 56 M +L+ + + I NI NA+ + + Q Sbjct: 1 MGILSSLYTGVSGMTAQGEALGVIGDNIANANTIGFKASRAEFQDIISKNLKGIVGGNQI 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + I + + + E Y Sbjct: 61 GRGVKIGAVNPILSQGNIDATEKVTDLAISGDGYFKVKGSDGESYTRDGSFHFDREGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + D +V I A A KE++L+++ Sbjct: 121 TNDNQRVQGFSTDEKGNIVNKMTDIKFPRALIPAKATKELKLDLNLD------------- 167 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S + + + S G ++++ Sbjct: 168 -------------------------SRMEPTKKFDPADPYSTSHYSTGVEMYDSQGNKHL 202 Query: 237 FEKMNSYTVTSESN-PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + E +DG ++ + + + L+ D + Sbjct: 203 VSFFFNKVNDREWEFKGLVDGKEITGGEEGKMSEVAAGKLMFTVDGKLDS---------- 252 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + N G +K + + + QY N + Sbjct: 253 --------QETTSTNFNFKGGALQDQQVKLNFGDAIKDGGKGLDGTKQYGKNSDLISWHQ 304 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + L Y + + +A L + N + E Sbjct: 305 DGAAAGTITGLSFNDEGTLTAVYSNGQANDLAQIALAKFENPEALFKVGNNRL--KESRD 362 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + V+L E +I+ ++ + + K I TD++L + Sbjct: 363 SGTASVGAPGAAGRGKLFAKSLERSTVDLATEFVNMIQNQRGFQANAKTITTTDELLNEV 422 Query: 476 LEGVK 480 ++ + Sbjct: 423 IQLKR 427 >gi|302338085|ref|YP_003803291.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] gi|301635270|gb|ADK80697.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] Length = 460 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 48/488 (9%), Positives = 112/488 (22%), Gaps = 43/488 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK----- 60 + N + I NI N + + + R ++ Sbjct: 3 SLYAGVSGLQNHQTRMDVIGNNISNVNTVGFKKGRVNFQDLLSQTMSGAARPTDEVGGVN 62 Query: 61 --------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 N+ ++ ++ + + + Sbjct: 63 PKQVGLGMNVASIDTVHTQGSLQTTGIMTDIAIQGDGFFIERSGDKEFYTRAGAFGLDEN 122 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N S L + + F +A +V+ + + + L Sbjct: 123 GTLVNPSN-GLRVQGWMAQDVDGRTFINTATDVEDLVIPVGSKDPARATGEVDLACNLDK 181 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 I DV S I + + + + Sbjct: 182 RTPLIPAGAGDA----------DVAEGTWSIDKTIYDSFGEEHVLRINFTRVAGTENQWQ 231 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + +N + G + V + L D Q D Sbjct: 232 GSVTVDP----DAEAPTNTLVDIGEANNDTNTFVVEFDNLGTLQAAVDG-------QGDR 280 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + D E + + D + Q+ S Sbjct: 281 IDNGTLQVNVAFDVAGATPEAGAPVRQDMVLNLGDVGSV------VDTITQFAEKSSTKA 334 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + Y + N+ +A L + + ++ Sbjct: 335 FKQDGYGMGYLESFKIDQSGVITGVYSNGANRTLGQVALASFTNPGGLEKAGES--TFVV 392 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N S + + V+L E+ + +I ++ + +++ I +D+ML Sbjct: 393 SNNSGEARIGESGVAGKGKLIAGALEMSNVDLAEQFTDMIVTQRGFQANSRTITTSDQML 452 Query: 473 QTLLEGVK 480 Q LL + Sbjct: 453 QELLTLKR 460 >gi|283784870|ref|YP_003364735.1| flagellar hook-associated protein 1 [Citrobacter rodentium ICC168] gi|282948324|emb|CBG87909.1| flagellar hook-associated protein 1 [Citrobacter rodentium ICC168] Length = 546 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 61/547 (11%), Positives = 147/547 (26%), Gaps = 73/547 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++FN A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLFNNAMSGLNAAQAALVTASNNINSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD S + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTQYEQMSKIDNLLAD--KTLSVSASMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +T+I A +V F T+ + ++ + I + + + ++ Sbjct: 119 TLISNAEDPAARQTLIGKANGLVNQFKTTDQYLRDQERQINTSIASSVQQINNYSQQIAN 178 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSDG 224 +N+ I T + +D LDQRD L+ ++++I+G+ G Sbjct: 179 LNEQISRLTGVGAGAAPNDLLDQRDQLVSELNKIVGVEVSIQDGGTYNITMANGYSLVQG 238 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFID----------------------------- 255 + + + + +S I+ Sbjct: 239 SNARQLAAVPSQADPSRTTVAYVDSQAGNIEIPEKLISTGSLGGLLTFRSHELDQTRNTL 298 Query: 256 ---------------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN---------QLD 291 + + I +++ + ++ Sbjct: 299 GQLALAFADAFNNQHNAGFDAEGNPGMDFFNIGGPTVLKNGKNTGTADVDATVTDAAKVQ 358 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ S+ G D S + S Sbjct: 359 ATDYKMVFDGSKWQITRLADNTSFEATETGGKLSFDGLEVTVGSGAAANDSFTLKPVSGA 418 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V+ + + + + + + + + + + + Sbjct: 419 IINMGVNVTNESQIAMAEDPTAGESDNRNGQVLLDLQNNGTTVGGSKSFNDAYATLVSTV 478 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V +++ + GVNL EE L + +Q Y + +++ + + Sbjct: 479 GSRTAALKTASKTQDNVVTQLTKEQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANSL 538 Query: 472 LQTLLEG 478 LL Sbjct: 539 FDALLGI 545 >gi|154252985|ref|YP_001413809.1| flagellar hook-associated protein FlgK [Parvibaculum lavamentivorans DS-1] gi|154156935|gb|ABS64152.1| flagellar hook-associated protein FlgK [Parvibaculum lavamentivorans DS-1] Length = 613 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 74/446 (16%), Positives = 153/446 (34%), Gaps = 18/446 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--- 57 MSL + A + N RNI N Y R+ + + R Sbjct: 1 MSLSSALGAAMSGLNVTQAGIDVTSRNIANVGTAGYTRKVQQQVNALAGGEGIGVRREAA 60 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L S+ + + + M N+S IS L L+ + Sbjct: 61 QRQIDEFLQQQLRTASAGSAFANVKANMLGRVDSMFGTPDSNSSIAGAISGLATMLQELA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N D +++++ A + N + VQ++R +A++ I + + L + VN+ Sbjct: 121 GNPESDAARQSLLNEAGNLAAKLNNMSGTVQEMRLEAERNIAAAVESANALLGTIADVNN 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + A D D+RD+ + ++S ++ + + R++ + ++TS G L + P ++ Sbjct: 181 QIAQRQAGNLSVGDLQDKRDMAIDELSRLMDVKVVNRDDGTVTIFTSGGQLLLDRTPVEL 240 Query: 236 NFEKMNSYTVTSE-------SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 F++ TS + + + A+ G I + +RD ++P Q Sbjct: 241 RFDERTQMDPTSTRENGGVGTISLISGSNSIDLLAAGAIRSGAIAGFVSLRDDILPKAQA 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---- 344 QLDE+A L + SE+ + + + + +S T+ Q Sbjct: 301 QLDELAAQLALALSEEQVASEAAVDGAATGFDIDTASMMAGNTISLSYTVGGVTQNVTIV 360 Query: 345 -RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLE 402 +P+ L + K V + + D V+ + L+ Sbjct: 361 RVDDPASLPLANDFTAKPNDIVVGIDFNQPMAGIIADLQAALPADVVVSNPGGDTIRFLD 420 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVV 428 + + + + Sbjct: 421 DGAAGNSDINSVSATVTPAGLSDGTM 446 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 42/97 (43%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N ++ +AR + + +++ QVV + + + + GVN Sbjct: 517 APGTGIGGTSTPFNGSVDAFARRIVSFQSGQAANATRDAEAQQVVASSLQDRFDAQTGVN 576 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+S L+ ++ +Y+ + ++I ++ LL + Sbjct: 577 IDDEMSNLLLLQNAYSANARVITTIKQLFDVLLSIGR 613 >gi|224825170|ref|ZP_03698276.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] gi|224602841|gb|EEG09018.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] Length = 598 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 57/445 (12%), Positives = 139/445 (31%), Gaps = 23/445 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 ++F+ + N A NI N + Y R+ T + V + Sbjct: 3 TSIFSIGVSGLNAAQGALTVTSHNISNVNTAGYTRQVTQQAARYPQSASYGFIGQGVDLT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + + + + F + + AD + + SL++ Sbjct: 63 HVNRVYDDYLTQQVQSAQATDSYYSGQLDFLKQVDSLMAD--STVGVSPSLQDFFGSLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + S +T I+NA+ + F T ++Q++ + I+ + + S++ + Sbjct: 121 LSSDPSAIPSRQTAINNAQALATKFRTLDGQLQEMASGVSTRIKASVDTINGLASQIADL 180 Query: 174 NDAIKFKT------ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 N I T + +D LDQRD + ++++ + S + +++ V+ +G TL Sbjct: 181 NQRISGLTVKTSGGTTLSAPNDLLDQRDQAILELNKQVKASVVPQSDGSYSVFIGNGQTL 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + S + G + L RD+ + + Sbjct: 241 VLGNQANQLATQPDPADPQQLQLVYQSTSGSNTVIPTSLIQGGALGGLFDFRDNTLTEAR 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +L +A + + + + + PG + + ++ Sbjct: 301 TRLGNLAIDFATAINYQQQLGLDLNGQPGQPLF----TDLSAYASDPRGAASALQVTMTD 356 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L ++ +G + Y A +VT + Sbjct: 357 PKGLATASNLKPGSPAVSPTGSGL-TISGVYSTLPGNYGWSSASAAGAPDVTAHPSYNLT 415 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHI 432 ++ + ++ +N + Sbjct: 416 SLSIDSTTMTATVVNGAGTTTYNVV 440 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/426 (10%), Positives = 109/426 (25%), Gaps = 22/426 (5%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 G + ++ + + L ++ + + + Sbjct: 172 GLASQIADLNQRISGLTVKTSGGTTLSAPNDLLDQRDQAILELNKQVKASVVPQSDGSYS 231 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV-NDAIKFKTASKHDAHDFLDQ 193 V N + + + + + + T N I D Sbjct: 232 VFIGNGQTLVLGNQANQLATQPDPADPQQLQLVYQSTSGSNTVIPTSLIQGGALGGLFDF 291 Query: 194 RDVLLQK-------ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR------------D 234 RD L + ++ + + + + G LF + Sbjct: 292 RDNTLTEARTRLGNLAIDFATAINYQQQLGLDLNGQPGQPLFTDLSAYASDPRGAASALQ 351 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + S P S + + + + + Sbjct: 352 VTMTDPKGLATASNLKPGSPAVSPTGSGLTISGVYSTLPGNYGWSSASAAGAPDVTAHPS 411 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-SETICVNPQYRSNPSFLRD 353 L + + N G + + + + + S + V+ S Sbjct: 412 YNLTSLSIDSTTMTATVVNGAGTTTYNVVPQPNVENGYKLVSGSPAVDAGIAFKLSGQLT 471 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLLEYARNSIGWLE 412 G AG + + + D A +++ + + + + ++ Sbjct: 472 TGLTLSVVPNAAPIGAGDNANLLEMTKLQTRPLVDDDRADTSSSLTSFASHYASMVSYVG 531 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++ V ++ GVNL EE + LIK +Q+Y S+K+I ++ Sbjct: 532 SVTNEVAVTSTAQTNVLQEAQKARDAISGVNLDEEAANLIKYQQAYQASSKVIQIAQQLF 591 Query: 473 QTLLEG 478 +LL+ Sbjct: 592 SSLLQI 597 >gi|228907371|ref|ZP_04071229.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL 200] gi|228852232|gb|EEM97028.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL 200] Length = 432 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V +V G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVEYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + + + D + +ET + Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDHAKDMKLNPEFQKDISKMKISAETANKLAAVTEDD 345 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 ++ + I Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|289208120|ref|YP_003460186.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. K90mix] gi|288943751|gb|ADC71450.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. K90mix] Length = 640 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 58/364 (15%), Positives = 126/364 (34%), Gaps = 18/364 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + + + NI N+ + Y R+ T + V Sbjct: 1 MSVSG---IGTSALLAFQRAIGTTSNNIANSATEGYSRQRTELGNLSPQFLGGSYQGQGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R + + + L S + + + ADD + D+ Sbjct: 58 GVDAIRRISDDFVNTQLRTSISGQSNAQAKADLAGRIDNLLADDAS--GLAPVLQGFFDA 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + AE + + F +++ R + +IE + + + L Sbjct: 116 ASDVANDPTSNAARTVFLTEAESLAERFKAIDGRLEEQRRIVNGQIETNVKEINQLAESL 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I K+ +D LDQRD +L +++E + ++T+ +++ + V+ +G L Sbjct: 176 AGLNREIVAKSTQG-TPNDLLDQRDRVLNQLAEKVDLTTVEQDDGALNVFIGNGQALVLG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S I V +N + G++ LL++RDSV+ QN L Sbjct: 235 GTSQSLVADSFSGDPGKLEVGIQSGSGV--ANITRFLQGGELGGLLEMRDSVIDTAQNTL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A L + ++++ +++ G I + + + Sbjct: 293 GQIAIQLGQASNDQNAQGLDADGQIGGDIFGIGSPAVWGRSSNSTGDVPEVSFGNVDELT 352 Query: 351 LRDG 354 D Sbjct: 353 TSDY 356 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 41/426 (9%), Positives = 109/426 (25%), Gaps = 13/426 (3%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D L+ L + ++L + D ++ + + L Sbjct: 218 DGALNVFIGNGQALVLGGTSQSLVADSFSGDPGKLEVGIQSGSGVANITRFLQGGELGGL 277 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + + A ++ + D + + + + + + ++ Sbjct: 278 LEMRDSVIDTAQNTLGQIAIQLGQASNDQNAQGLDADGQIGGDIFGIGSPAVWGRSSNST 337 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D L + + + + +V S+ + E P D + + + Sbjct: 338 GDVPEVSFGNVDELTTSDYRLR----VTDDGDFQLVRLSNNQVVAELDPDDGDTLEADGL 393 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 V G + L Q + E Sbjct: 394 VVDISELDDAEAGDNWLIQPTRNGARDLDVVLDDPSGIAAAGASLQASAADGNGGDATIE 453 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG----SVSK 359 + G++ + L + +++ P P+ + G Sbjct: 454 GIQVTGDAFDPAVLDDPITVTVVEDGGDLFYEVNGEQFPVNDDGPTVIELDGWELTLQGT 513 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-----TLLEYARNSIGWLEKN 414 + + D + + + N + + I + Sbjct: 514 PEEGDEFVVELDRDRPGDNRNMLEMADLSEARTIETDNGDRRVPGFGDAYNSLIANVGTR 573 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 ++ + + GVNL EE + LI+ +Q+Y + ++I ++ + + Sbjct: 574 TRQANVALDSANAQLEQAKAQRESISGVNLDEEAADLIRYQQAYQAAAQVIQVSNSLFDS 633 Query: 475 LLEGVK 480 LL + Sbjct: 634 LLGAFR 639 >gi|228984822|ref|ZP_04144994.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775020|gb|EEM23414.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 432 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 61/492 (12%), Positives = 144/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASHGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M+ N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMAGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKGLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I E GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGIASDKSAVNAYQKIHGDLLEGIQEEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|218896670|ref|YP_002445081.1| flagellar hook-associated protein FlgK [Bacillus cereus G9842] gi|228900319|ref|ZP_04064549.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL 4222] gi|218546008|gb|ACK98402.1| flagellar hook-associated protein FlgK [Bacillus cereus G9842] gi|228859354|gb|EEN03784.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL 4222] Length = 432 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +N + + E +P+ ++ N S K I + + ++ Sbjct: 236 -----TVNGQDTYPLQLNKEKDPMSVEIYGSEINVTSGAIKSAID-----TKAKIVDYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + G D KL + I Sbjct: 286 NLEDLMSSVKNQVNTVMG----------KDFFVGDHAKDMKLNPEFQKDISKMKISAETA 335 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + L K + I Sbjct: 336 NKLAAITDGDYKEGL-----------------------------------SYKAALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|298345998|ref|YP_003718685.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC 43063] gi|304390244|ref|ZP_07372198.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236059|gb|ADI67191.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC 43063] gi|304326726|gb|EFL93970.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 484 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 53/493 (10%), Positives = 121/493 (24%), Gaps = 24/493 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + + T + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ Q L +++ + + D K + Sbjct: 54 APRLNERGGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSV 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN-------- 174 + + Q VQ D D I + L V Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKVI 173 Query: 175 -------DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 D I + D QR ++ + ++ + Sbjct: 174 YGGNIPADQIYMDPTGSKTSPDNAFQRSQIVHAYDDKGNPHDVLLTFARNDFANPGSEPM 233 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +E D N K T + + + G +V G K D V+ Sbjct: 234 WELRAYDANVFKELDETQREKLTNDGGARIALEVEDGGSVSIGGSKVKPADGDGVLNFKF 293 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + + N Q I+ + + Sbjct: 294 KTDGTLDEDSLKAMKTVKFKLDQVNVNETTTPKSSSILQPNVTKQPINLDLSALTGFGGV 353 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 +F + + ++ + + + N+ VA + L + + Sbjct: 354 NNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSY 413 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++E S + ++ V+L E + LI ++ + ++++I Sbjct: 414 --FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITT 471 Query: 468 TDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 472 SDEILQELVNMKR 484 >gi|228920449|ref|ZP_04083794.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839079|gb|EEM84375.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 432 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 151/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V +V G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + I + ++ + +NP+++ + Sbjct: 286 NLEDLMSSVKNQVN--------------------IVMGKDFFVGDYAKDMKLNPEFQKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|213585978|ref|ZP_03367804.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 546 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412 >gi|317047697|ref|YP_004115345.1| flagellar hook-associated protein FlgK [Pantoea sp. At-9b] gi|316949314|gb|ADU68789.1| flagellar hook-associated protein FlgK [Pantoea sp. At-9b] Length = 547 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 81/550 (14%), Positives = 174/550 (31%), Gaps = 77/550 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI N Y R+ T+ + VTV Sbjct: 1 MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYTRQTTILGQANSTLSGNSYYGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + S+ Q + + + S + I +++ Sbjct: 61 TGVQREYDEFITAQLRSASATYNAQN--TQYSQISNIDDLLSTSTTSLSTSIQDFFTNVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + ++++ NA+ +V F T+A+ + ++ + +I + + + S++ Sbjct: 119 NVVSNADDPSARQSMLSNAQGLVNQFQTTAQYLTNMQTSVNTDITSSVDQINTYTSQIAN 178 Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I T +D LDQRD L+ +++I+G++ ++ + + + TTL Sbjct: 179 LNTQIAKLTTGDGTAPNDLLDQRDQLVSSLNDIVGVTVSQQDGSY--IVSMGSTTLVNGS 236 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S + + + G + LL R + QNQL Sbjct: 237 KTTSLVAMPSSSDPSRITVGYVDKQAGNVEIAEKTLTTGSLGGLLAFRTQDLDTAQNQLG 296 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG----------------------------- 322 ++A SF+ +S G + Sbjct: 297 QLAAAFATSFNTIHKEGYDSNGDQGTDFFNIGSPEVLSNTKNTSSTTLSAEWTDTSALKA 356 Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D N S+ + V ++ + + A L+ Sbjct: 357 SNYTVSYDGTNWSVTRQSDNVSVTATQGTDADGNTTLSFDGLQLTVSGTPAAKDSFLVKP 416 Query: 378 YCDSFNKNFIFDPV----------------------------AGINTNVTLLEYARNSIG 409 + + +N N TL E + + Sbjct: 417 VQNVIGDMSVAITDESQIAAAGAVDGASDNTNAQKLLDLQDSKLVNGNATLAEAYASIVS 476 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + V + +S+ + GVNL EE + L K +Q Y + +++ Sbjct: 477 TVGNKTSTLETTSTTQESVVSQLSDRQQSISGVNLDEEYANLTKYQQYYTANAQVLQTAS 536 Query: 470 KMLQTLLEGV 479 + L++ + Sbjct: 537 TIFNALIDSL 546 >gi|218235346|ref|YP_002366423.1| flagellar hook-associated protein FlgK [Bacillus cereus B4264] gi|229069290|ref|ZP_04202580.1| Flagellar hook-associated protein FlgK [Bacillus cereus F65185] gi|229078920|ref|ZP_04211472.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock4-2] gi|229178147|ref|ZP_04305518.1| Flagellar hook-associated protein FlgK [Bacillus cereus 172560W] gi|218163303|gb|ACK63295.1| putative flagellar hook-associated protein [Bacillus cereus B4264] gi|228605277|gb|EEK62727.1| Flagellar hook-associated protein FlgK [Bacillus cereus 172560W] gi|228704334|gb|EEL56768.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock4-2] gi|228713777|gb|EEL65662.1| Flagellar hook-associated protein FlgK [Bacillus cereus F65185] Length = 432 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V +V G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + + + D + +ET + Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDYAKEMKLNPEFQKDVSKMKMSAETANKLAAVTDDD 345 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 ++ + I Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|228952118|ref|ZP_04114213.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807650|gb|EEM54174.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 432 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + Sbjct: 286 NLNEFVNSLKKQVNNTMKKEF--------------------------------------- 306 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G +KK N + + + N I D G +T + + Sbjct: 307 ----FVGEDAKKLELNPDFIKDISKMKISAETANNLAAITD--KGYKDGLTYKQALDQFL 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|228938852|ref|ZP_04101452.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971733|ref|ZP_04132354.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978342|ref|ZP_04138719.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis Bt407] gi|228781359|gb|EEM29560.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis Bt407] gi|228787823|gb|EEM35781.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820701|gb|EEM66726.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939352|gb|AEA15248.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar chinensis CT-43] Length = 432 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +N + + E +P+ ++ N S K I + + ++ Sbjct: 236 -----TVNGQDTYPLQLNKEKDPMSVEIYGSEINVTSGAIKSAID-----TKAKIVDYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + G D KL + I Sbjct: 286 NLEDLMSSMKNQVNTVMG----------KDFFVGDHAKDMKLNPEFQKDISKMKISAETA 335 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + L K + I Sbjct: 336 NKLAAITDGDYKEGL-----------------------------------SYKAALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|229109195|ref|ZP_04238794.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-15] gi|228674205|gb|EEL29450.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-15] Length = 432 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V +V G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVEYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + + + D + +ET + Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDYAKDMKLNPEFQKDVSKMKMSAETANKLAAVTDDD 345 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 ++ + I Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|312135845|ref|YP_004003183.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311775896|gb|ADQ05383.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 489 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 45/495 (9%), Positives = 122/495 (24%), Gaps = 23/495 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVVKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASADMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRYTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDRMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++L + I + D + T T + Sbjct: 181 SADLKTYSGQITKYEDLLNVPADSKYS--TSFKIYDSQGKEHTFQLTFVKTGDNTWNWYV 238 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 V +++ + + + + + G+ D Sbjct: 239 DAPRVKKNVGTAQNPDEKYVYVDEMLDANNDYDNFIATGTIIFGQAG--KVFDDENTSDK 296 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + +I + I ++ V + + D + + Q+ + Sbjct: 297 VEGITITGGRIINTADGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNFAFFLKNITQFGN 356 Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S +R + N+ + Y + N+ VA L Sbjct: 357 MESSIRVAQMTGYSAGNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGD 416 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N ++ S ++ IS+ V+L +E + +I ++ Y + ++I Sbjct: 417 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 474 Query: 466 MFTDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 475 TSSDEILQELVNIKR 489 >gi|224534099|ref|ZP_03674682.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi CA-11.2a] gi|224512798|gb|EEF83166.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi CA-11.2a] Length = 388 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 47/352 (13%), Positives = 120/352 (34%), Gaps = 24/352 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTN 347 >gi|229155309|ref|ZP_04283420.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 4342] gi|228628234|gb|EEK84950.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 4342] Length = 432 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 145/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKGLDTAEAQTREDIEAHVNEFNRLVG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVEIYGSEIPLASGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMGSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I E GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGIASDKSAVNAYQKIHGDLLEGIQEEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|302382558|ref|YP_003818381.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] gi|302193186|gb|ADL00758.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 56/489 (11%), Positives = 134/489 (27%), Gaps = 20/489 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT 54 MS+ + + S A+I +NI N + Y R + + Sbjct: 1 MSINSALLAGVSGLTANSAALAAISQNIANVNTVGYKRTAAEFSTVVNSQSQGAGYSAGG 60 Query: 55 QRSENKNMFDK--VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + +N + L +S+ Q F E D + R Sbjct: 61 VLANTRNYIAQGGQLQRTTSSTDLGIAGQGFFVTTEKAEGLDAGDARLFTRAGAFRVDNF 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLSELT 171 Y KN + L ++ ++ + + + E + L Sbjct: 121 GYLKNTAGLYLQGWPVNAEGDIPTDPSDLGKLTSINVGSVGGTAEATTRAQVNANLKSSQ 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 V+ I + + + + I + V + +T Sbjct: 181 AVSADIATYSTATKSMSTYNATTGTGFKPD-FQITVPVSDSKGGQRTVA----YSFLKTA 235 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +++ + N ++ S G++ Sbjct: 236 NPNEWQTEVHVIPASDIDNGTTPSNGILKSGLVLFTQDGRLDVDAMKARETATPGSMLFA 295 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + I + + + +++ ++ + QY S+ Sbjct: 296 DPSVASITLGASDAAAGTAAAPKWKTSLGIDNQNV----SFDLTASAGGLTQYDSDSIVQ 351 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + + + + + +A + +L + N + Sbjct: 352 AVVTNGTAFGNLSNIEIDEEGYVTAIFDNGVTRRIAQVALATFTSADSLTPASGN--AYR 409 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + +L I S V+L E + LI +++Y+ S+K+I D+M Sbjct: 410 VSQGSGTFNLKTPGAGGAGLIGASQLEASTVDLSAEFTGLITTQRAYSASSKIITTADEM 469 Query: 472 LQTLLEGVK 480 L L+ + Sbjct: 470 LAELISIKR 478 >gi|222530130|ref|YP_002574012.1| hypothetical protein Athe_2164 [Caldicellulosiruptor bescii DSM 6725] gi|222456977|gb|ACM61239.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 488 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 50/497 (10%), Positives = 133/497 (26%), Gaps = 28/497 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ + + I D L+ S I S + + + T Sbjct: 181 SADTKIYSGQITKFE-------DLLNVPADSKYSTSFKIFDSQGKEHTLQLTFIKTGDNT 233 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQIRDSVVP 284 V + + + E+ D + +++ + + +G I ++ D Sbjct: 234 WEWFVDAPRVKKNIGTAQNPQEAYVYVDDMIEANNDYDNFIARGTITFGQAGKVLDDENT 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + I + + I + V + + D I+ + Q+ Sbjct: 294 PDVEGIAITGGRFINTQNGTFTINFKNNVVNPVTLKVNSSQFDVNDATNIAFFLKNITQF 353 Query: 345 RSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + S +R + N+ + Y + N+ +A L Sbjct: 354 GNMESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRI 413 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++ S ++ IS+ V+L +E + +I ++ Y + + Sbjct: 414 GDNL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 471 Query: 464 LIMFTDKMLQTLLEGVK 480 +I +D++LQ L+ + Sbjct: 472 VITASDELLQDLVNIKR 488 >gi|229144350|ref|ZP_04272756.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST24] gi|296502338|ref|YP_003664038.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis BMB171] gi|228639137|gb|EEK95561.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST24] gi|296323390|gb|ADH06318.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis BMB171] Length = 432 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 145/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYESAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDILLSGGTILSAIDTK-TKITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + Sbjct: 286 NLNEFVNSLKKQVNNTMKKEL--------------------------------------- 306 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G +KK N + + + N I D G +T + + Sbjct: 307 ----FVGEDAKKLELNPDFIKDISKMKISAETANNLAAITD--KGYKDGLTYKQALDQFL 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|229096224|ref|ZP_04227197.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-29] gi|229102337|ref|ZP_04233045.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-28] gi|229115179|ref|ZP_04244589.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-3] gi|228668319|gb|EEL23751.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-3] gi|228680984|gb|EEL35153.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-28] gi|228687184|gb|EEL41089.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-29] Length = 432 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 149/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ + + E +P+ ++ + S K I + + ++ Sbjct: 236 -----TVSGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAID-----TKAKIVEYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+ + + + G D KL ++ I Sbjct: 286 NLEGLMSSVKNQVNTVMG----------KDFFVGDYAKDMKLNPEFAKDISKMKISAETA 335 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + L D G++ L ++ I Sbjct: 336 NKLAAITDG-------------------------------DYKEGLSNKQALDQF----I 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|323175686|gb|EFZ61280.1| flagellar hook-associated protein FlgK [Escherichia coli 1180] Length = 500 Score = 154 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 56/495 (11%), Positives = 138/495 (27%), Gaps = 64/495 (12%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V V + E L A + + + M + +S + Sbjct: 7 VGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQ 64 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 SL++ N + + +I +E +V F T+ + ++ + I + + Sbjct: 65 DFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINN 124 Query: 166 FLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + ++ +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++ Sbjct: 125 YAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMAN 184 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G +L + +S + + + G + +L R + Sbjct: 185 GYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGALGGILTFRSQDL 244 Query: 284 PIFQNQLDEMARVLIGSFSEKDPI--------------------------------AGNS 311 +N L ++A +F+ + Sbjct: 245 DQTRNTLGQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATV 304 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + D DN Q + + + F + Sbjct: 305 TDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSF 364 Query: 372 P----------------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + + + + Sbjct: 365 TLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDA 424 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + V +S + GVNL EE L + +Q Y + + Sbjct: 425 YASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQ 484 Query: 464 LIMFTDKMLQTLLEG 478 ++ + + L+ Sbjct: 485 VLQTANAIFDALINI 499 >gi|206970814|ref|ZP_03231766.1| putative flagellar hook-associated protein [Bacillus cereus AH1134] gi|206734450|gb|EDZ51620.1| putative flagellar hook-associated protein [Bacillus cereus AH1134] Length = 432 Score = 154 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 150/492 (30%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V +V G IK+ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+++ + + + ++ + +NP+++ + Sbjct: 286 NLEDLMSSVKNQVNTVM--------------------GKDFFVGDYAKDMKLNPEFQKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKMSAETANKLAAVTDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|226939368|ref|YP_002794441.1| FlgK [Laribacter hongkongensis HLHK9] gi|226714294|gb|ACO73432.1| FlgK [Laribacter hongkongensis HLHK9] Length = 610 Score = 154 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 62/436 (14%), Positives = 144/436 (33%), Gaps = 19/436 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ N N A + +N+ N + Y R+ + + V V Sbjct: 2 SLLNIGVTGLNAARAALTTTSQNVSNVNTAGYHRKAVNQSALYYGPGQFGNTGNGVRVDD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + DK + +S+ ++ + + + L S++S Sbjct: 62 IYRVYDSYLDKAVQTATSSSKYYDTQYAYLDQLDQI--ISSSTTGLAPRMQDLFTSIQSL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + S + +ID A +V F + + +R + EI ++++ ++ +N Sbjct: 120 SSDPSSIPARQAMIDKAAALVNTFKSVDIRHEDLRTGINTEIRSGVTSINGLAKQIATLN 179 Query: 175 DAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 D I + D LDQRD L ++++ IG +++ ++ + V+ +G +L Sbjct: 180 DQIAKLWQGGSNPPNDLLDQRDQALTELNKYIGATSVPLDDGTINVFMGNGQSLVLGAQT 239 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + G+ + + G + L++RD + Q QL + Sbjct: 240 FELEAIQSKADASELTVGYKGTGI---ELPKTLLTGGSLGGALEMRD-TLNKSQQQLGAI 295 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A L+ SF+ + + PG + + ++P L++ Sbjct: 296 AVSLVSSFNAQHQQGVDRNGNPGKEFFGLDFNFPEFNTAFNVASGQNPGAPVTHPVNLQN 355 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA--RNSIGWL 411 + + A + + +I+ A + + Y+ L Sbjct: 356 LTPEQTEVVNRFALRALSQKVTKPEEIAAASGYIYQAGATNTGDGKVSSYSGLAGMRADL 415 Query: 412 EKNRSDSHDLHMKSQV 427 + + + S Sbjct: 416 ATALGTAPGITVTSDG 431 Score = 90.5 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 38/372 (10%), Positives = 88/372 (23%), Gaps = 10/372 (2%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + + + K + +S+ Sbjct: 248 KADASELTVGYKGTGIELPKTLLTGGSLGGALEMRDTLNKSQQQLGAIAVSLVSSFNAQH 307 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + N + + + S + + N + + Sbjct: 308 QQGVDRNGNPGKEFFG---LDFNFPEFNTAFNVASGQNPGAPVTHPVNLQNLTPEQTEVV 364 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 R ++ + + + S I+ G + GK+ + + + Sbjct: 365 NRFALRALSQKVTKPEEIAAASGYIYQAGATNTG-------DGKVSSYSGLAGMRADLAT 417 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + +AG P I S T Sbjct: 418 ALGTAPGITVTSDGAGNFTLAGAGLTTPPYSIIPAPGTTGGYKVVHTSPTGQQTDAGFEF 477 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 +F + N K + V TL Sbjct: 478 TMTGTPAAGDQFQFRQRLPTDPFTETGDNSNLTQLAKLQTAEVVDVGGGKTTLQGAYGQL 537 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + ++ + + S N GVNL EE + L+K +Q+Y S+K++ Sbjct: 538 ATMVGSKTNEVKVMKDAQTAILKEAMVSRENVSGVNLDEEAANLLKYQQAYQASSKVVQI 597 Query: 468 TDKMLQTLLEGV 479 + ++L+ + Sbjct: 598 AGSLFDSILQAI 609 >gi|328948264|ref|YP_004365601.1| flagellar hook-associated protein FlgK [Treponema succinifaciens DSM 2489] gi|328448588|gb|AEB14304.1| flagellar hook-associated protein FlgK [Treponema succinifaciens DSM 2489] Length = 623 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 56/419 (13%), Positives = 132/419 (31%), Gaps = 29/419 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TIS 46 A + S Q + NI NAD + Y R+ + Sbjct: 5 FAGIEIGKRSLMAHSTQIQTAGHNISNADTEGYSRQRVIVKSFEPIYRPDLERAMVPGQI 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + V + + + + + + ++ E + ++ + S + K Sbjct: 65 GQGCDVESINRIKDELLESRIVEQKNVESYWETRDKYYSMIESVY-NEPNDVSVRTNMDK 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + S D V+ + + + + ++ I + +IE + + Sbjct: 124 FWQGWQELSTYPESDAARLAVVVRGQTLTNSIQQQYKSLRGIGDQINGDIEAVVKQVNDL 183 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ VN I + +D +D+RD+L++K+S +I ++ ++ ++ +V+T Sbjct: 184 SRQIASVNGEIVRSKGLGDNPNDLMDRRDLLVEKLSSLINVTVTQKDPDEFMVHTDGQII 243 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + ++ R I TV N + + + + G + AL+++RD + Sbjct: 244 VQGSLARQIE-------TVGQLDNNGYGKLMWSDTKVDAEFHGGTLGALVELRDKDIRTE 296 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICVNP 342 L+ MA ++ A N GL ++N Sbjct: 297 IQSLNTMALNFADLVNDVHRNAIGKNNTTGLDFFVQHDFVENVNGNYDRNGDGVEDTSYI 356 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + L+ + + +G D+ D+ + L Sbjct: 357 FRMTGTNVLKMQEQIGLFGTMTINGASGNIDVAYFSTDTVEDVINRINDSNGEVKAYLD 415 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 101/341 (29%), Gaps = 5/341 (1%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + + DK+I EI +L + + + K++ + Sbjct: 279 GGTLGALVELRDKDIRTEIQSLNTMALNFADLVNDVHRNAIGKNNTTGLDFFVQHDFVEN 338 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + ++ GT + + + F M + + + V Sbjct: 339 VNGNYDRNGDGVEDTSYIFRMTGTNVLKMQEQIGLFGTMTINGASGNIDVAYFSTDTVED 398 Query: 262 NQGSAVPKGKIKALLQIRDS--VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 R+S V+ ++ E +I + + Sbjct: 399 VINRINDSNGEVKAYLDRNSCLVLKATSSKGMENPDFVIRHVEDSGMFLTGYSGILQGSG 458 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 AD D + + NPS + + + + +V Sbjct: 459 ADNAYDFNRANAVDVLAGAQFAVSPVLNPSAYIEVNGLIQNDVSSVAAAFKNSQGFAEPS 518 Query: 380 D---SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 D + I + I + T +Y ++I + + + + + + Sbjct: 519 DGRAAVEMAAIRNTKIMIGSQRTFDDYFADTITNVGLKGEQAQNQLATQNKIMGDLRDLR 578 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GVN+ EEL+ +IK + YN++ K I D++L TL+ Sbjct: 579 DSISGVNIDEELADIIKFQHGYNVAAKFISVQDELLDTLIN 619 >gi|229121290|ref|ZP_04250521.1| Flagellar hook-associated protein FlgK [Bacillus cereus 95/8201] gi|228662135|gb|EEL17744.1| Flagellar hook-associated protein FlgK [Bacillus cereus 95/8201] Length = 432 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTK-VKIASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|196045090|ref|ZP_03112323.1| putative flagellar hook-associated protein [Bacillus cereus 03BB108] gi|228945341|ref|ZP_04107696.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|196024092|gb|EDX62766.1| putative flagellar hook-associated protein [Bacillus cereus 03BB108] gi|228814313|gb|EEM60579.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 432 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|312621577|ref|YP_004023190.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202044|gb|ADQ45371.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 488 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 50/497 (10%), Positives = 132/497 (26%), Gaps = 28/497 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ + + I D L+ S I S + + + T Sbjct: 181 SADTKIYSGQITKFE-------DLLNVPADSKYSTSFKIFDSQGKEHTLQLTFIKTGDNT 233 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQIRDSVVP 284 V + + + E+ D + +++ + + +G I ++ D Sbjct: 234 WEWFVDAPRVKKNIGTAQNPQEAYVYVDDMIEANNDYDNFIARGTITFGQAGKVLDDENT 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + I + I + V + + D I+ + Q+ Sbjct: 294 PDVEGIAITGGRFINTQDGTFTINFKNSVVNPVTLKVNSSQFDVNDATNIAFFLKNITQF 353 Query: 345 RSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + S +R + N+ + Y + N+ +A L Sbjct: 354 GNMESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRI 413 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++ S ++ IS+ V+L +E + +I ++ Y + + Sbjct: 414 GDNL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 471 Query: 464 LIMFTDKMLQTLLEGVK 480 +I +D++LQ L+ + Sbjct: 472 VITASDELLQDLVNIKR 488 >gi|225620569|ref|YP_002721826.1| flagellar hook-associated protein FlgK [Brachyspira hyodysenteriae WA1] gi|225215388|gb|ACN84122.1| flagellar hook-associated protein FlgK [Brachyspira hyodysenteriae WA1] Length = 672 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 120/357 (33%), Gaps = 28/357 (7%) Query: 1 MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43 MS + F + N NI N K Y R+ + Sbjct: 36 MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEQPSLNRA 95 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + T D + G + + E + ++ N + Sbjct: 96 ERAGQIGQGAEITTVERIRDQFIDSKIMMELGTDGYWKTKSDYLKQLEAIY-NEPGNANL 154 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + DS + + N +E +++ A+ + + N ++ +R + + +E ++ Sbjct: 155 RNDLDAFWDSWQEMAANPAERGTRMVLVERADRINNSINQMFNQMNGMRNNLNNLVENKV 214 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + +N I + A +D LD+RD+L+ ++S + + + ++ ++Y Sbjct: 215 KRINDISNSIRDLNVEIVKQQALGQSPNDLLDRRDLLVDELSSLANVDIKSVDPDETMIY 274 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + V +++ E+ + +N D + G++KAL+++RD Sbjct: 275 IGGRALIQGNVVSELSVER-------NINNEGMYDIYWKKDHVQVQFEGGELKALMELRD 327 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 N LD A L S +E G+ K + + Sbjct: 328 VDTVDAINDLDTFAMNLADSVNEIHRSGFGLNQETGIDFFTVTKTTPSVIGNFDINN 384 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 33/336 (9%), Positives = 97/336 (28%), Gaps = 6/336 (1%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVLLQKISEII 205 D D ++ +N T + D + + + + Sbjct: 335 NDLDTFAMNLADSVNEIHRSGFGLNQETGIDFFTVTKTTPSVIGNFDINNDGQEDSTIMF 394 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 +S I ++ + +S + + + I+ + + Sbjct: 395 KVSGINSVDSTSSIGSSGTLVFGNKSREGADVAIDYTAQMKVGELIDKINSSEANVSAYL 454 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + D + P + + E + + + +G + I + Sbjct: 455 DDKNRLVLKARGFDDYMRPSYFIKHIEDSGDFLVGITGVLNQSGAAGAYNWQTIDQVNQL 514 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383 + ++ N D ++ + + I ++ Sbjct: 515 AGDFRNFTVTPDRHPASAIAVNDIIRNDINYIAASKGIDTTGNGFNDKWNGIGDGSNALA 574 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +++ T ++ S+ + ++ K VV ++ + + GVN Sbjct: 575 IANLKTKEIMVDSKSTFNDFYTGSLAKIASRTETANAETEKQTVVMEYLEKLRQSVSGVN 634 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ + + YN S +++ D++L ++ + Sbjct: 635 LDEEVAQMAMYQHGYNASARVVSVMDQLLDVVINRM 670 >gi|30019783|ref|NP_831414.1| flagellar hook-associated protein FlgK [Bacillus cereus ATCC 14579] gi|229127064|ref|ZP_04256063.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-Cer4] gi|29895328|gb|AAP08615.1| Flagellar hook-associated protein 1 [Bacillus cereus ATCC 14579] gi|228656417|gb|EEL12256.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-Cer4] Length = 432 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYESAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + + +NP + + Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + D F Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|116626183|ref|YP_828339.1| flagellar hook-associated protein FlgK [Candidatus Solibacter usitatus Ellin6076] gi|116229345|gb|ABJ88054.1| flagellar hook-associated protein FlgK [Candidatus Solibacter usitatus Ellin6076] Length = 475 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 74/497 (14%), Positives = 171/497 (34%), Gaps = 40/497 (8%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVT 51 MS LLA + N + + N+ NA Y ++ P V Sbjct: 1 MSNLLASLVSSANTLQAYGRVLEATQNNVSNASTPGYAKQSIELYALPFDPQGGATGGVR 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 T +S ++ + ++ +G Q+ L + + N ++ L S Sbjct: 61 AGTLQSARNEYAEQAVRNQTTGLGYQQQLADSLTVLQTNFDITG-NQGIPQALNSLLQSF 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ + + +TV+ A+ + Q FN +A V + D ++++ + + + + +L Sbjct: 120 SAWGASPDDPSARQTVLQRADALAQAFNQTANSVSSVSRDTERQVGDTVGQINQLVGQLK 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N + + L+++S + + + ++ + + T L Sbjct: 180 GYNQ---LALQGNKNDAGLSARVHSALEQLSSLADVQAVFIDDGSVSLTIGGQTPLLIGD 236 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV--VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + +NP+ + S + G++ AL+++R+ V+P Sbjct: 237 QQYAISASLYVPAEPPATNPLGAGQMRLQASDGSDISNAGGQLGALVKLRNDVMPSLIGD 296 Query: 290 ------LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 L+ MA+ ++ + PG+ I D + I V P Sbjct: 297 RYQTGDLNLMAKQFADRVNQLLTGGSTTAGQPGVAIFQYNPDDPTSIASAIKVDTSVTPD 356 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + S G P + N + + + A + ++ Sbjct: 357 QLAAVSI-------------------GPPTVSNGVPLALSALAVPTQDADRINGFSFSQF 397 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 G + +D+ + Q + + GV+L EE + L++ +++Y + K Sbjct: 398 YGQVAGTVGNLLNDAQNNTEVQQSLLTQAKDLRQQYQGVSLDEEATTLMQFQRAYQANAK 457 Query: 464 LIMFTDKMLQTLLEGVK 480 + D++ QT ++ +K Sbjct: 458 YLSVLDELTQTAIDILK 474 >gi|153940778|ref|YP_001392018.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. Langeland] gi|152936674|gb|ABS42172.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. Langeland] gi|295320033|gb|ADG00411.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. 230613] Length = 621 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/360 (11%), Positives = 115/360 (31%), Gaps = 27/360 (7%) Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 DA+ ++ ++ RF + A K + + D + + Sbjct: 263 DGNYQDANLVQRIDPEDVYRFSYIKDIKPPAGKKPGEAGEYTVTYYVGGDTKTEDNKRTL 322 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQG 264 I+ + + T + I + + + +G + + Sbjct: 323 TINIGSEEDFKRLDECRVLWTDKDGNAVQIKDNSGKLESDNNAIGVLGDNGKSDFKNLKL 382 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGI 323 P G+++ + ++ + ++ QL+++A+ L S + + + G Sbjct: 383 FEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALDFFIN 441 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + N + + I +N + +P + G + K + + + Sbjct: 442 GENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNSGEGDGKRALAIAQIKDVFMSIQG 500 Query: 384 KNFIFDPVAGI-----------------------NTNVTLLEYARNSIGWLEKNRSDSHD 420 + D + +T+ Y + IG L + +++ Sbjct: 501 IDKNTDRKTFLKKFFKPNDEFEFNGTTLSTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQR 560 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + GV++ EE + L++ Y + K+I D++L ++ G+K Sbjct: 561 MVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 620 >gi|229058370|ref|ZP_04196754.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH603] gi|228719879|gb|EEL71469.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH603] Length = 432 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 146/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T++ + N A+ + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGAL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I+A + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVAIYGSDIPLSGGAIQAAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + G + + I +NP++ + Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|306820122|ref|ZP_07453770.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551900|gb|EFM39843.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 474 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 52/491 (10%), Positives = 133/491 (27%), Gaps = 30/491 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53 ++ N A + N + I NI N + + T S + Sbjct: 1 MMRSMNSAVSSLKNHQARMDVIGNNIANVNTVAFKAARTTFKDTYSQLTRAASGSSGDRG 60 Query: 54 TQRSENKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + ++ + + E D + Sbjct: 61 GINPGQIGLGMNLSSIDNAMDKGTVETTNINTDLYIDGEGFFMVDGPDGRFYTRDGNFGV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E Y N + + + D ++ ++ KI+ ++ ++++ L Sbjct: 121 DEEGYLVNKNGNYVMGYQADKDGNII-------EKIDKIQVPIKDVLKPKVTS-NIQLEG 172 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A + + D++ V S+ + + Sbjct: 173 NLSSKTAEGLPSPLPNTLATIYDKKPVDPADPSKGFTYTVKPE------LAEGSSPKRES 226 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + I ++S F+ + + + A++ + S + Sbjct: 227 IIGKTITTSVIDSLGGEHTIQVDFVKEGPNTWSAYAFYKTPD-GAMVPVTGSTINTNPAT 285 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + F++K + + F D + QY S + Sbjct: 286 TADGKALTGFKFTDKGLVDPANAVKELTFTLDPSGINGAAPINNFKIGLSSLTQYESKST 345 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 K ++ +I + + K A + L + N Sbjct: 346 AFAKTNDGYKLGELTKMSIGSDGKVIGQFNNGDTKALGQIVTATFSNVNGLQKQGDNL-- 403 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W S +++ + V+L +E + +I ++ + ++++I TD Sbjct: 404 WSPTENSGEANINKPGSGGNGALLSGALEMSNVDLAKEFTNMIVTQRGFQANSRVITTTD 463 Query: 470 KMLQTLLEGVK 480 +ML+ L+ + Sbjct: 464 QMLEELVNLKR 474 >gi|49477285|ref|YP_035858.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477174|ref|YP_894325.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis str. Al Hakam] gi|196033487|ref|ZP_03100899.1| putative flagellar hook-associated protein [Bacillus cereus W] gi|196038896|ref|ZP_03106203.1| putative flagellar hook-associated protein [Bacillus cereus NVH0597-99] gi|229090699|ref|ZP_04221932.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-42] gi|300117343|ref|ZP_07055133.1| flagellar hook-associated protein FlgK [Bacillus cereus SJ1] gi|49328841|gb|AAT59487.1| flagellar hook-associated protein 1 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416399|gb|ABK84818.1| flagellar hook-associated protein 1 [Bacillus thuringiensis str. Al Hakam] gi|195993921|gb|EDX57877.1| putative flagellar hook-associated protein [Bacillus cereus W] gi|196030041|gb|EDX68641.1| putative flagellar hook-associated protein [Bacillus cereus NVH0597-99] gi|228692641|gb|EEL46367.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-42] gi|298725178|gb|EFI65830.1| flagellar hook-associated protein FlgK [Bacillus cereus SJ1] Length = 432 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|254723815|ref|ZP_05185601.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. A1055] Length = 432 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMKGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLRSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|170755438|ref|YP_001782346.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1 str. Okra] gi|169120650|gb|ACA44486.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1 str. Okra] Length = 621 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA+ + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S G+ N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/450 (10%), Positives = 131/450 (29%), Gaps = 34/450 (7%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS--- 119 + + +S + Q L ++ + + + + Sbjct: 173 IQQTVFEVNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFE 232 Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + ++ DA+ ++ ++ RF + Sbjct: 233 GIKLSTSNHAKNYQDKTSPFGGEPPQIQDKDGNYQDANLVQRIDPEDVYRFSYIKDIKPP 292 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A K + + D + + I+ + + T + I Sbjct: 293 AGKKPGEAGEYTVTYYVGGDTKTEDNKRTLTINIGSEEDFKRLDECRVLWTDKDGNAVQI 352 Query: 236 NFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + +G + + P G+++ + ++ + ++ QL+++A Sbjct: 353 KDNSGKLESDNNAIGVLGDNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLA 411 Query: 295 RVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + L S + + + G + N + + I +N + +P + Sbjct: 412 KALAFSVNAVHTQSLDPASPKDGALDFFINGENPNNEMEITAGNIALNKAIKEDPMKI-I 470 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------------- 394 G + K + + + + D + Sbjct: 471 AGVTPNSGEGDGKRALAIAQIKDVFMSIQGIDKNTDRKTFLEKFFKPNDEFEFNGTTLST 530 Query: 395 ----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +T+ Y + IG L + +++ + ++ + GV++ EE + Sbjct: 531 IGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFAN 590 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L++ Y + K+I D++L ++ G+K Sbjct: 591 LVQFNHCYQANAKIISTVDQLLDVVINGLK 620 >gi|225863597|ref|YP_002748975.1| putative flagellar hook-associated protein [Bacillus cereus 03BB102] gi|225789227|gb|ACO29444.1| putative flagellar hook-associated protein [Bacillus cereus 03BB102] Length = 432 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESLNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|86157770|ref|YP_464555.1| flagellar hook-associated protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774281|gb|ABC81118.1| flagellar hook-associated protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 469 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 71/486 (14%), Positives = 150/486 (30%), Gaps = 35/486 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51 LL++ + A+ N++NA+ Y R+ + + + Sbjct: 4 LLSILSSGAASLAAQRAAAATASHNLQNANTPGYARQRAVLATTLPAEQAGGAWIGRGAS 63 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + ++ L A + S +++ D P + L +L Sbjct: 64 LAQVTQARDRFLEQQLPAALGQSARSAAAASVLEAVQVL--DPEAEGGPGDALGGLHAAL 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S+ S+ L + + A + +FN + + ++ RA AD I ++S +++ Sbjct: 122 TQLSQAPSDPGLRQAAVAAARTLALSFNRARQGLEDARAGADARIAGDLSEANDLAAQVA 181 Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N ++ AS + +D LD R ++S + G + D+ + G L Sbjct: 182 ALNRDVRAARASGAGEPNDLLDARQRAADRLSALTGAVPAATSEGDLSLLLPGGAALVAG 241 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + V+ G++ LL + L Sbjct: 242 LGASTLLAHPGPDGHLGVRLATGTVSADVAPG-------GELGGLLDASGGPLKAAVTGL 294 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D++A + + GL + D I V+ ++P+ Sbjct: 295 DQLAWAVGNQLDAAHRAGFGLDGSTGLDLFDVGTTPAGAA-----RRIAVSAAVAADPAR 349 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L G + + A + + G Sbjct: 350 LA---------TATAAGQPGDGGNVLALLATTTARIATGQGADLLAGLDATGALSRITGA 400 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + +H+S + GV++ EEL + + +++Y +K+I T + Sbjct: 401 FGAAARGLAAAAAQDAGLADHLSALRESASGVSVDEELLEMERAQRAYEAISKVIQATSE 460 Query: 471 MLQTLL 476 M TLL Sbjct: 461 MFDTLL 466 >gi|218902853|ref|YP_002450687.1| putative flagellar hook-associated protein [Bacillus cereus AH820] gi|218537195|gb|ACK89593.1| putative flagellar hook-associated protein [Bacillus cereus AH820] Length = 432 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQINRLAKSLDTTEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|229166579|ref|ZP_04294331.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH621] gi|228616833|gb|EEK73906.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH621] Length = 432 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 146/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T++ + N A+ + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPIQLNKEKEPMSVAIYGSDIPLNGGAIQSAIDTK-VKIASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + G + + I +NP++ + Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|229132551|ref|ZP_04261400.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST196] gi|228650897|gb|EEL06883.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST196] Length = 432 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 147/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T++ + N A+ + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNITSVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKGSEPMTVAIYGSDIPLNGGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + G + + I +NP++ + Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K + ++ + I Sbjct: 326 SKMKISAETANKLAGITEGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I E + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQEEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|301053275|ref|YP_003791486.1| flagellar hook-associated protein [Bacillus anthracis CI] gi|300375444|gb|ADK04348.1| flagellar hook-associated protein [Bacillus cereus biovar anthracis str. CI] Length = 432 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIGSVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|327480026|gb|AEA83336.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri DSM 4166] Length = 685 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 61/416 (14%), Positives = 132/416 (31%), Gaps = 24/416 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + Q + NI N + Y R+D T+ Sbjct: 1 MADLLSIGLSGLAASKTQLSITGHNITNVNTPGYSRQDATQATRSPQFSGAGYIGSGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R L + +S +S + + A T + K +L+ Sbjct: 61 VDVRRTYSEFLTSQLRSSTSLNRDVEAYKSQIDQLDSLLA--GTTTGITPSLQKFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + V+ AE + + FNT + + +K++ + R + Sbjct: 119 TAAEDPANIPARQLVLAEAEGLARRFNTVYDRLSEQNIFTNKQMSAVTDQVNRLAGSIGS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N+AI A+ +D LD RD ++++S IG++ + ++++ V+ G L Sbjct: 179 LNEAIAIAAANGKQPNDLLDARDEAVRQLSGYIGVTVVPQDDSSFNVFIGSGQPLVVGSK 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 G S + G++ L++ R+ V+ N L Sbjct: 239 VARLEVVPGQGDPNRHEVQFISGGS--RQGITSQITGGELGGLIRYREEVLDSTMNSLGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + + + + G + D + N S ++ Sbjct: 297 LALAVSDQVNTQLGQGLDLKGQVGSALFGNYNDPALAKL--------RVNAFAGNQSNVQ 348 Query: 353 DGGSVSKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 S++ + L S K P A + TL + Sbjct: 349 PELSITDSSKLTTSDYRLEFDGTSFTARRLSDGKAITVSPAAPGSFPATLSFSFAD 404 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/443 (10%), Positives = 114/443 (25%), Gaps = 10/443 (2%) Query: 38 RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 R + + +Q + + L + A+ + ++ Sbjct: 253 RHEVQFISGGSRQGITSQITGGELGGLIRYREEVLDSTMNSLGRLALAVSDQVNTQLGQG 312 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + +L + + L + VQ + + +D E + Sbjct: 313 LDLKGQVG---SALFGNYNDPALAKLRVNAFAGNQSNVQPELSITDSSKLTTSDYRLEFD 369 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 RR + + + F D +VL + G + ++ + Sbjct: 370 GTSFTARRLSDGKAITVSPAAPGSFPATLSFSFADP-NVLPPALPRDQGFTLVLESAPAA 428 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 S T ++ + + + G L+ Sbjct: 429 GDKFSLQPTRRGASDIATVLDQADQLAFAAPLRAQAEPQNAGNGMIGQPSIDNVQAPLIP 488 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + G + + L I G + N + T Sbjct: 489 ANLKDMSPLSLSYAAPVAPATTGTFTLTAPTGVTVSPATLSITPGQSNTLNYALEFGGST 548 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + V+ + P + L ++ D +K + + Sbjct: 549 VNVSQTFSGRP------AAGDTFTLEYNQSGVSDNRNALKLVDLQSKQTVGVTAGIAGSG 602 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 + + + + + + + + +++ + VNL EE + LIK EQ Sbjct: 603 FSFTDGYGELVERVGTLTAQARMDSEATGAILKQATDNRDSLSAVNLDEEAANLIKFEQY 662 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 YN S ++I + TL+ + Sbjct: 663 YNASAQIIQVARSLFDTLISTFR 685 >gi|299822281|ref|ZP_07054167.1| flagellar hook-associated protein FlgK [Listeria grayi DSM 20601] gi|299815810|gb|EFI83048.1| flagellar hook-associated protein FlgK [Listeria grayi DSM 20601] Length = 509 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 74/510 (14%), Positives = 159/510 (31%), Gaps = 37/510 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51 L+ +N + + N A +NI N + YVR++ + V Sbjct: 3 LSDYNVSLSGMNAAQIATMVAQQNISNINTAGYVRQNVNQQALYGDGGLLQGKQTGYGVK 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + S + N P+ Y+ S Sbjct: 63 VTDIARVTSGALNLQYNQQIAKQSAAAYGSSALGQAMNLFGTLGTNT-PSDYLDNFFTSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN + ++ + N + ++ +I ++ L +S+ Sbjct: 122 GALAKNPDQQTNATALLSDMNLFEGQLNQLKLGLDDLQHTISTDIRASVTGLNDLISKFG 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N AI A + +D L++RD LL ++S +ST NN V + G L Sbjct: 182 KLNQAI--GNAGSNPPNDLLNERDSLLAQMSAYAKVSTTTHPNNPEVYDITIGGRLVVQG 239 Query: 232 PRD---INFEKMNSYTVTSESNPIFIDGVVVSSNQG-------------SAVPKGKIKAL 275 + + SY + + N + + + + + G + Sbjct: 240 SKTNQIQMTAQNGSYQFSVDGNQLDLPEGQLRAAVDVGGKEIKDYQTKLNTFMDGLVDGT 299 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 Q + + +Q+ ++ L + + I E V L G+ Sbjct: 300 NQAQLNSFNNQIDQIAKINLQLQADPANETLIKNRDEAVRQLAKFPGVTVDSTNGTLSYD 359 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------DLINHYCDSFNKNFIFD 389 +N F N + + + Sbjct: 360 GNTFTIAAIDTNAKASDISQFSIPIFSKNPDGSLQLNPILTKDNSSQGFLGAIADQMSAL 419 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 N TL ++ I + + S ++ + +++S + S+ GVN+ EE++ Sbjct: 420 KNTTTIGNATLSDFMDGLITTVATDSSGANAIAKAENQTLDNLSNAKSSVEGVNIDEEMT 479 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M Q+LL + Sbjct: 480 NIMQYQSYYVANTKAMNIVNDMFQSLLNIM 509 >gi|228926774|ref|ZP_04089842.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832887|gb|EEM78456.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 432 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 59/492 (11%), Positives = 142/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++I ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIGAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|229172385|ref|ZP_04299944.1| Flagellar hook-associated protein FlgK [Bacillus cereus MM3] gi|228610856|gb|EEK68119.1| Flagellar hook-associated protein FlgK [Bacillus cereus MM3] Length = 432 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDSVELQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 NLAEANKKI--GEAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNMASVRMNGAL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDAYPLQLNKEKEPMSVEIYGLEIPLASGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + G + D KL ++ I Sbjct: 286 NLEELMSSVKNEVNTVMG----------KEFFVGDQAKDMKLNPEFAKDISKMKISAETA 335 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + L + K + + + Sbjct: 336 NKLAAITDGNYKVGL-----------------------------------SYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L ++S + + I + + GVN++EE+ L+ ++ + ++K + Sbjct: 361 VGLASDKSAVNAYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAMTTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|52143720|ref|YP_083109.1| flagellar hook-associated protein FlgK [Bacillus cereus E33L] gi|51977189|gb|AAU18739.1| flagellar hook-associated protein 1 [Bacillus cereus E33L] Length = 432 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|226320912|ref|ZP_03796463.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 29805] gi|226233684|gb|EEH32414.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 29805] Length = 358 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 126/363 (34%), Gaps = 24/363 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDVRDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E F + +K D++ + +P Sbjct: 296 NEINELNNIAANIIEIVNEIHEADMEWIKKWKKFFSQELKLTDDRGRYDTNGNGQFDPFI 355 Query: 345 RSN 347 SN Sbjct: 356 FSN 358 >gi|30261738|ref|NP_844115.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Ames] gi|47526956|ref|YP_018305.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. 'Ames Ancestor'] gi|49184566|ref|YP_027818.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Sterne] gi|65319005|ref|ZP_00391964.1| COG1256: Flagellar hook-associated protein [Bacillus anthracis str. A2012] gi|167633324|ref|ZP_02391649.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0442] gi|167639070|ref|ZP_02397343.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0193] gi|170686189|ref|ZP_02877411.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0465] gi|170706527|ref|ZP_02896987.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0389] gi|177650561|ref|ZP_02933528.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0174] gi|190566328|ref|ZP_03019246.1| putative flagellar hook-associated protein [Bacillus anthracis Tsiankovskii-I] gi|229601207|ref|YP_002866138.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0248] gi|254683226|ref|ZP_05147087.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. CNEVA-9066] gi|254734579|ref|ZP_05192291.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Western North America USA6153] gi|254740987|ref|ZP_05198675.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Kruger B] gi|254759766|ref|ZP_05211790.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Australia 94] gi|30255966|gb|AAP25601.1| putative flagellar hook-associated protein [Bacillus anthracis str. Ames] gi|47502104|gb|AAT30780.1| putative flagellar hook-associated protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178493|gb|AAT53869.1| flagellar hook-associated protein, putative [Bacillus anthracis str. Sterne] gi|167512860|gb|EDR88233.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0193] gi|167531362|gb|EDR94040.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0442] gi|170128625|gb|EDS97492.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0389] gi|170669886|gb|EDT20627.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0465] gi|172083705|gb|EDT68765.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0174] gi|190562463|gb|EDV16430.1| putative flagellar hook-associated protein [Bacillus anthracis Tsiankovskii-I] gi|229265615|gb|ACQ47252.1| putative flagellar hook-associated protein [Bacillus anthracis str. A0248] Length = 432 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLRSGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + + + + +NP++ + Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + + Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + I + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|168180854|ref|ZP_02615518.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC 2916] gi|182668369|gb|EDT80348.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC 2916] Length = 621 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S GI N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 43/360 (11%), Positives = 115/360 (31%), Gaps = 27/360 (7%) Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 DA+ ++ ++ RF + A K + + D + + Sbjct: 263 DGNYQDANLVQRIDPEDVYRFSYIKDIKPSAGKKPGEAGEYTVTYYVGGDTKTEDNKRTL 322 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQG 264 I+ + + T + I + + + +G + + Sbjct: 323 TINIGSEEDFKRLDECRVLWTDKDGNAVQIKDNSGKLESDNNAIGVLGDNGKSDFKNLKL 382 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGI 323 P G+++ + ++ + ++ QL+++A+ L S + + + G Sbjct: 383 FEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALDFFIN 441 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + N + + I +N + +P + G + K + + + Sbjct: 442 GENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNSGEGDGKRALAIAQIKDVFMSIQG 500 Query: 384 KNFIFDPVAGI-----------------------NTNVTLLEYARNSIGWLEKNRSDSHD 420 + D + +T+ Y + IG L + +++ Sbjct: 501 IDKNTDRKTFLEKFFKPNDEFEFNGTTLSTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQR 560 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + GV++ EE + L++ Y + K+I D++L ++ G+K Sbjct: 561 MVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 620 >gi|161614593|ref|YP_001588558.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363957|gb|ABX67725.1| hypothetical protein SPAB_02343 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 553 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDKTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412 >gi|161503729|ref|YP_001570841.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865076|gb|ABX21699.1| hypothetical protein SARI_01814 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 553 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 134/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQSALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 ATARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFGIGSPVVYSNSNNADKTVSLTAEVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D K I + T + Sbjct: 359 QATDYQIVFDGTDWQVTRLADNTTFTATKDVDGKLEIDGLKVTVGTGAQKNDSF 412 >gi|167553029|ref|ZP_02346779.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322438|gb|EDZ10277.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 553 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412 >gi|228958018|ref|ZP_04119754.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801643|gb|EEM48524.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pakistani str. T13001] Length = 432 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + + +NP + + Sbjct: 286 NLNEFVNSLKKQVNSTMKKELFVGEDAKK--------------------LELNPDFIKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + D F Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|163939544|ref|YP_001644428.1| flagellar hook-associated protein FlgK [Bacillus weihenstephanensis KBAB4] gi|163861741|gb|ABY42800.1| flagellar hook-associated protein FlgK [Bacillus weihenstephanensis KBAB4] Length = 432 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 63/492 (12%), Positives = 146/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T++ + N A+ + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVAIYGSDIPLNGGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E+ + G + + I +NP++ + Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|194468525|ref|ZP_03074509.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454889|gb|EDX43728.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 553 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 60/414 (14%), Positives = 136/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T V + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGVQKNDSF 412 >gi|197262560|ref|ZP_03162634.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204930865|ref|ZP_03221738.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|197240815|gb|EDY23435.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204320324|gb|EDZ05528.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 553 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 ATARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412 >gi|16760059|ref|NP_455676.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764539|ref|NP_460154.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142170|ref|NP_805512.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413830|ref|YP_150905.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179700|ref|YP_216117.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167994047|ref|ZP_02575139.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234109|ref|ZP_02659167.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237266|ref|ZP_02662324.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244782|ref|ZP_02669714.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264024|ref|ZP_02685997.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467136|ref|ZP_02700978.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822627|ref|ZP_02834627.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442729|ref|YP_002040437.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448239|ref|YP_002045182.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736355|ref|YP_002114182.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249622|ref|YP_002146860.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362753|ref|YP_002142390.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241785|ref|YP_002215954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390530|ref|ZP_03217141.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857309|ref|YP_002243960.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051794|ref|ZP_03344672.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213648932|ref|ZP_03378985.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865497|ref|ZP_03387616.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584313|ref|YP_002638111.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910997|ref|ZP_04654834.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289828575|ref|ZP_06546400.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61224025|sp|P0A1J5|FLGK_SALTY RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|61224026|sp|P0A1J6|FLGK_SALTI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|25300786|pir||AH0640 flagellar hook-associated protein 1 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47679|emb|CAA36025.1| HAP1 (AA 1-553) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419700|gb|AAL20113.1| hook-filament junction protein 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502353|emb|CAD08307.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Typhi] gi|29137800|gb|AAO69361.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128087|gb|AAV77593.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127333|gb|AAX65036.1| flagellar biosynthesis, hook-filament junction protein 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401392|gb|ACF61614.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406543|gb|ACF66762.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711857|gb|ACF91078.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630439|gb|EDX49065.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094230|emb|CAR59735.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213325|gb|ACH50722.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289876|gb|EDY29237.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936301|gb|ACH73634.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602975|gb|EDZ01521.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328045|gb|EDZ14809.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331904|gb|EDZ18668.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336421|gb|EDZ23185.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341046|gb|EDZ27810.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347332|gb|EDZ33963.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709112|emb|CAR33445.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468840|gb|ACN46670.1| flagellar hook-associated protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246394|emb|CBG24203.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992957|gb|ACY87842.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157724|emb|CBW17216.1| flagellar hook-associated protein 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912170|dbj|BAJ36144.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086377|emb|CBY96150.1| Flagellar hook-associated protein 1 HAP1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223801|gb|EFX48864.1| Flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616553|gb|EFY13462.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620506|gb|EFY17370.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622500|gb|EFY19345.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629651|gb|EFY26426.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632629|gb|EFY29375.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636876|gb|EFY33579.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641586|gb|EFY38224.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646487|gb|EFY42997.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650024|gb|EFY46442.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653949|gb|EFY50272.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322663339|gb|EFY59541.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670073|gb|EFY66213.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674863|gb|EFY70954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676667|gb|EFY72734.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682589|gb|EFY78608.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686658|gb|EFY82637.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714170|gb|EFZ05741.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129453|gb|ADX16883.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195772|gb|EFZ80948.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198336|gb|EFZ83440.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204842|gb|EFZ89836.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209183|gb|EFZ94120.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213433|gb|EFZ98229.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217857|gb|EGA02572.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222145|gb|EGA06529.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224917|gb|EGA09175.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229659|gb|EGA13782.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232884|gb|EGA16980.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240619|gb|EGA24661.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242933|gb|EGA26954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250251|gb|EGA34140.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252625|gb|EGA36463.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258847|gb|EGA42500.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261036|gb|EGA44629.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266945|gb|EGA50430.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269986|gb|EGA53435.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623702|gb|EGE30047.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988074|gb|AEF07057.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 553 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412 >gi|307699899|ref|ZP_07636950.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] gi|307614937|gb|EFN94155.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] Length = 512 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 47/522 (9%), Positives = 114/522 (21%), Gaps = 54/522 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61 +L + + NI N + + T + V N+ Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGATARLNER 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 Q L +++ + N D K Sbjct: 61 --------GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQ 112 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + Q VQ +AD ++ L + Sbjct: 113 VYTRNGSFGLDAKGQVVAADGSFVQGWKADKKGKVNASGGTSNLVLPLTETMKAEPTRDV 172 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGIST------------------------------IV 211 + D + S+ T Sbjct: 173 IFGGNMPADKRLLDPSKEPTSDNAFTKTQNLRVFDDKGTPHDILMEFTREDIDGTGTGSK 232 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + I E + + S + Sbjct: 233 WRVRFYDQKVYNALPKELRQAAQIEIELPQKNKEGVAIKDLDKIKKDMLSGKDDDKFNNV 292 Query: 272 IKALLQIRDSVVP-------------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + Q Q+ + + ++ + K G + Sbjct: 293 LDGGKDNTGKPTGNPVKNPKDLLISFDSQGQISKRDKEVLANLKMKISNYGEVVSFDDNG 352 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 D + ++ + Y +F D + N + + + Sbjct: 353 TKKYGFKADKVAAEDVTIDMSKLTGYAGVNNFAVDQVDGNDAGTLNGFGVEADGTIRGTF 412 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + ++ A + + L + + ++E S + ++ Sbjct: 413 SNGMSRAMGKIATAAFSNPLGLEKAGASY--FVESGNSGQPQIGEPGSGSRGAMTGGAIE 470 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E + LI ++ + + ++I +D++LQ L+ + Sbjct: 471 MSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELVSMKR 512 >gi|322832570|ref|YP_004212597.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602] gi|321167771|gb|ADW73470.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602] Length = 550 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 76/549 (13%), Positives = 166/549 (30%), Gaps = 76/549 (13%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A + N A ++ NI N Y R+ + T S VTV Sbjct: 3 SSLINTAMSGLNAAQAALSTTGNNIANVSVAGYNRQTAIITQSNGISTPAGYIGNGVTVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 E + K L S+ + + + D + +S L++ Sbjct: 63 GVNREYNSFVVKQLLGASATGSALSTQLDQASSIDDLLGD--SSTGIDATMSTFFKGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S+ + V+ A+ + FN+SA+ + + ++++ + + + S++ + Sbjct: 121 LTSNASDSAARQAVLGEAQGLTAQFNSSAKYLNDMNTAVNQQVTQNVDQINTYASQIAKL 180 Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I ++ + + LDQRD L+ +++ + G+ ++ + + ++GT L Sbjct: 181 NSQITATRGSTGQEPNALLDQRDQLVSQLNNVTGVVVTQQDGDTYNISFANGTPLVSGGN 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +S + + + VS Q S + G + L R + NQL + Sbjct: 241 AKTVVAMPSSADPSKLTVGMTQPDGSVSEIQESRLTTGSLGGTLAFRKDNLEPAINQLGQ 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L SF+ + + G + + Sbjct: 301 LALALSDSFNTTNKAGFDLNGDAGTDFFSFTGATTVSNTKNTGSAQLSVAYTDTAAVKAS 360 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---------------------PV 391 D W+V ++ + N + + V Sbjct: 361 DYTMAYNGTSWDVTRVSDGAKITPTAGTDSNGDPTMNFDGLSVSVTGTPNTNDSITIKTV 420 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK--------------------------- 424 + + ++ L + I S D Sbjct: 421 SNVAGSMNLAISDSSLIAAAGAADSGVSDNTNAQKLLNLQTAKLVEGKSTLSGAYASMVS 480 Query: 425 ---------------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + ++ + GVNL EE L + +Q Y + +++ Sbjct: 481 NVGNQVSTLTTTSTSQANIVTQLTAQQQSISGVNLDEEYGDLQRYQQYYLANAQVVQTAS 540 Query: 470 KMLQTLLEG 478 + ++ Sbjct: 541 TIFDAIINI 549 >gi|229189835|ref|ZP_04316846.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10876] gi|228593643|gb|EEK51451.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10876] Length = 432 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIATVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + + +NP + + Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + D F Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|330502740|ref|YP_004379609.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] gi|328917026|gb|AEB57857.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] Length = 681 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 130/379 (34%), Gaps = 14/379 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + N + A NI N + + R++T+ T+ Sbjct: 1 MADLLNIGLSGLAANKTSLAVTGHNIVNVNTPGFSRQETIQATRTPQFSGAGYIGSGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + + + ++ + ++ S N T + KL +L+ Sbjct: 61 TDVRRIYNDFLNTQVRSSTALNS--DTKAYLSQINQLDSLLAGSNTGVTPAMQKLFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + V+ AE + + FN + + A +K++ + + + + Sbjct: 119 TAAEDPANVPARQLVLSEAEGLAKRFNNIYDRLYEQNAFINKQLSAVTDQVNQLATSIAG 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI +++ +D LD R+ ++K+SE +G++ + +++N ++ G L Sbjct: 179 YNDAIAVASSNGQAPNDLLDAREEAVRKLSEFVGVTVVPQDDNSYNLFIGSGQPLVVGKN 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + I N S + G++ LL+ R V+ N + Sbjct: 239 AARLEVTPGLSDPLR--SEIQFVSGNSKQNVSSLITGGEMGGLLRYRQDVLDTSMNSIGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + G + I D + ++ +P N S Sbjct: 297 LSLSIADQMNRQLGQGLDLNGEFGKELFRPINDPLLLAQRSLARIGNSDPMANLNVSITD 356 Query: 353 DGGSVSKKFLWNVKNLAGY 371 + + + Y Sbjct: 357 TTRLTTSDYEVEFTSATEY 375 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/437 (10%), Positives = 113/437 (25%), Gaps = 22/437 (5%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + +++ D +++ + Q L + + + + Sbjct: 266 NVSSLITGGEMGGLLRYRQDVLDTSMNSI-GRLSLSIADQMNRQLGQGLDLNGEFGKELF 324 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 I+ + I N++ + + + +D + E Sbjct: 325 RPINDPLLLAQRSLA----------RIGNSDPMANLNVSITDTTRLTTSDYEVEFTSATE 374 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + R S+ + + + A + +S G M Sbjct: 375 YVVRRSSDGAMFPASPATFDINTVPAPEID------GFSLSVAQGTFAAGDRFTVMPTRN 428 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + T + + T +S N + + +A ++ Sbjct: 429 AARDTRADMKNPEELAFAAPLKTESSPGNTGTGTVSQPRLSTEIDIYDPAAQADMETSLR 488 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 P + + + ++ I + Sbjct: 489 NAPPMRIVMGAAGGATQSYEVLDINGNVINSGSITPGQSNKITINVPANPPNVPSAFAYE 548 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 PS + +N ++ + +N +P A T + Sbjct: 549 VSIGGRPS-----QGDNFSVSFNTNGVSDNRNALNLVDLQKKSVIGINPAAPDTTGASFS 603 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + + + S + + + +++ + GVNL EE + LI+ EQ Y S Sbjct: 604 DAYGDLVERVGTLTSQARVDGEATGAILKQATDNRDSVSGVNLDEEAAKLIQFEQYYQAS 663 Query: 462 NKLIMFTDKMLQTLLEG 478 ++I + TL+ Sbjct: 664 AQIIQVARNLFDTLINS 680 >gi|229149940|ref|ZP_04278168.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1550] gi|228633621|gb|EEK90222.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1550] Length = 432 Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSQYADIEVSYEAINPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + + +NP + + Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + D F Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 363 --IASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|307823537|ref|ZP_07653766.1| flagellar hook-associated protein FlgK [Methylobacter tundripaludum SV96] gi|307735522|gb|EFO06370.1| flagellar hook-associated protein FlgK [Methylobacter tundripaludum SV96] Length = 612 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 69/466 (14%), Positives = 152/466 (32%), Gaps = 27/466 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + A + + NI N + Y R+ + V V Sbjct: 1 MSGLLATSLSGLLVAQRSLETTQNNISNIHTEGYSRQRVEQGTKPAQFTGDGYVGQGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 +K L + SA G + + AD + +++ ++L Sbjct: 61 TNITRSYDQFINKQLSSSLSAFGDADRYHQLATSVDNIMAD--SSTGMAPVLNRFFNALS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S S + S + ++ A+ + QNFNT + ++IR + +I +++ + + + Sbjct: 119 SVSSDPSSIPSRQVLLSEADALAQNFNTIGGKFEEIRNLNNSDIGAKVNEINTLAAAIAD 178 Query: 173 VNDAIKFK---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I T +D LD++D LL ++SE++ +S + + N V+ +G L Sbjct: 179 LNVKIIANVGKTQGLKQPNDLLDKQDALLSRLSEMVNVSVVPQKNGTSSVFIGNGQALVL 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + I + + + + G + L+ RD V+ Q + Sbjct: 239 NGGAATFTTLESELAPGKLEIGIQTANGTI--DVTNQISGGSLGGALRFRDEVLDPAQQK 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A L F+ + G + D + ++ + + Sbjct: 297 LGQVAASLAMEFNAMHQKGFDLNGTAGSDLFKFAGDEVPVIQSSLNTGNAAVTASFQDVN 356 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + +K + G + D+ N TL A Sbjct: 357 VNPSATANLDFSDYKLKYVGGTDYTLTRTRDNQVINLTATDTVPATGVFTLSFAATQPAK 416 Query: 410 ---------WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 ++ + S + + + V + GVN+ + Sbjct: 417 TDVTALPGIDIKVDASGGKTIAVGDESVIRPTYNAAQKI-GVNITD 461 Score = 110 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 103/391 (26%), Gaps = 12/391 (3%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + ++ N + A ++ +A + Sbjct: 223 NGTSSVFIGNGQALVLNGGAATFTTLESELAPGKLEIGIQTANGTIDVTNQISGGSLGGA 282 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 R + + + + D+ S++ + + Sbjct: 283 LRFRDEVLDPAQQKLGQVAASLAMEFNAMHQKGFDLNGTAGSDLFKFAGDEVPVIQSSLN 342 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + ++N + + + ++ G + + + A + Sbjct: 343 TGNAAVTASFQDVNVNPSATANLDFS-DYKLKYVGGTDYTLTRTRDNQVINLTATDTVPA 401 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + V + A+ + + D S + + Q I I Sbjct: 402 TGVFTLSFAATQPAKTDVTALPGIDIKVDASGGKTIAVGDESVIRPTYNAAQKIGVNITD 461 Query: 341 NPQYRSNPSFLRDG-----------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + + + D G L N + + ++ + D Sbjct: 462 PKKIAAATNIEVDPVTKLPVQKLAGGVPVVDALGNPVYVTINGAMPGDNRNALQLADLKD 521 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 ++ + + + + + + + + N + + GVNL EE + Sbjct: 522 KLSMLGGKASFNDAYAQIVSGVGTLTQSAQFSSSAQETLLNQAKGARESLAGVNLDEEAA 581 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LIK +Q+Y S + I + TLL V+ Sbjct: 582 NLIKFQQAYQASAQSISVARSLFDTLLGAVR 612 >gi|229043492|ref|ZP_04191202.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH676] gi|228725870|gb|EEL77117.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH676] Length = 432 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + + A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSQYADIEVSYEATNPNIASVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + V S + G I + + + + +++ Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L+E L + + +NP + + Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + D F Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|170760196|ref|YP_001788056.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3 str. Loch Maree] gi|169407185|gb|ACA55596.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3 str. Loch Maree] Length = 621 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 85/272 (31%), Gaps = 19/272 (6%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N ++ + NI NA + Y R+ + Sbjct: 1 MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V + D GQ F + E + ++ + + Sbjct: 61 PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 K D+ S V+ A + N + E+ K++ + EI+ + Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+++ +N I + +D +D+RD+LL K+S G+ N + + TS Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFEGIKLSTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + ++ E + Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 45/450 (10%), Positives = 130/450 (28%), Gaps = 34/450 (7%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS--- 119 + + +S + Q L ++ + + + + Sbjct: 173 IQQTVFEVNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFE 232 Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + ++ DA+ ++ ++ RF + Sbjct: 233 GIKLSTSNHAKNYQDKTSPFGGEPPQIKDKDGNYQDANLVQRIDPEDVYRFSYIKDIKPP 292 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 K + + D + + I+ + + T + I Sbjct: 293 TGKKPGEAGEYTVTYYVGGDTKTEDNKRTLTINIESEEDFKRLDECRVLWTDKDGNAVQI 352 Query: 236 NFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + +G + + P G+++ + ++ + ++ QL+++A Sbjct: 353 ENNSGKLESDNNAIGFLANNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLA 411 Query: 295 RVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + L S + + + G + N + + I +N + +P + Sbjct: 412 KALAFSVNAVHTQSLDPAGPKDGALDFFINGENPNNEMEITAGNIALNKAIKEDPMKI-I 470 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------------- 394 G + K + + + + D + Sbjct: 471 AGVTPNSGEGDGKRALAIAQIKDVFMSIQGIDKNTDRKTFLEKFFKPNDEFEFNGTTLST 530 Query: 395 ----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +T+ Y + IG L + +++ + ++ + GV++ EE + Sbjct: 531 IGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFAN 590 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L++ Y + K+I D++L ++ G+K Sbjct: 591 LVQFNHCYQANAKIISTVDQLLDVVINGLK 620 >gi|226327737|ref|ZP_03803255.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198] gi|225203441|gb|EEG85795.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198] Length = 463 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 67/422 (15%), Positives = 143/422 (33%), Gaps = 14/422 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS ++ N A + N A +++ NI N + K Y R+ T+ + V Sbjct: 1 MS-NSLINTAMSGLNAAQAAMSTVSNNIANQNVKWYNRQMTVFNENSGTMTGNGYIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V E ++ S + + AD N + I + S Sbjct: 60 NVSRIHREYNEFLAGQMNRAMSKQSALNSYTKNISQINDLLAD--KGNDVSSAIDEFFTS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + + N ++ TVI AE +V F + + ++ + D + ++ N+ + ++ Sbjct: 118 LPNVTNNAEDNPARTTVIGKAEAMVNMFAKADQSLRDLEKDINSQVTNTSKNINEYTKQI 177 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N+ I + D +D LDQRD L+Q+++ ++ + ++ + V ++G L Sbjct: 178 AKLNNEISRSKGFNGADPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVTFANGLPLVS 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ V + G++ + R+ V+ +NQ Sbjct: 238 GTRSYEVSAIPSNKNSERLVLGYSNGIDEVREVDAKRIKGGELGGAYRSREEVLDPSRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+++A VL F+++ + + G + + + + Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLDGKNGEKFFELGGAHVMPNGKNKGDATFDVKYTDTKAV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 D W+V G + + F + T S+G Sbjct: 358 KAADYTVKYDGSKWDVTVEPGGRKVNAKVSATGELEFEGMSIKINGTAQKEDSIIVQSVG 417 Query: 410 WL 411 + Sbjct: 418 NV 419 >gi|254993553|ref|ZP_05275743.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J2-064] Length = 506 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 77/520 (14%), Positives = 159/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342 +++ + L + + N I D +K N + + Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346 Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES + Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKLSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|312126828|ref|YP_003991702.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776847|gb|ADQ06333.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 47/495 (9%), Positives = 131/495 (26%), Gaps = 26/495 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + S Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ + + I + D L+ S I S + + + T Sbjct: 181 SADTKIYSGQIT-------NYEDLLNVPADSKYSTSFKIYDSQGKEHTLQLTFVKTSDNT 233 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 V + + + E + + +++ + + +G I + Sbjct: 234 WEWFVDAPRVKKNIGTAQNPDEKYVYVDEMLDANNDYDNFIARGTITFGQAGKVLDDENT 293 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + I ++ V + + D I+ + Q+ + Sbjct: 294 TDVEGIAITGGRITGNGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNIAFFLKNITQFGN 353 Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S +R + N+ + Y + N+ +A L Sbjct: 354 MESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRIGD 413 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N ++ S ++ IS+ V+L +E + +I ++ Y + ++I Sbjct: 414 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 471 Query: 466 MFTDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 472 TASDELLQDLVNIKR 486 >gi|168333623|ref|ZP_02691883.1| flagellar hook-associated protein FlgK [Epulopiscium sp. 'N.t. morphotype B'] Length = 578 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 60/577 (10%), Positives = 157/577 (27%), Gaps = 105/577 (18%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENVT 51 + A + N+ N + Y R+ + V+ Sbjct: 3 LTTTVSGLTAAQKGLMVTGHNLANINTPGYTRQQLLQHETGYRDVRKYGGYTQQVGMGVS 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 R N D+ ++ + + + E + D+ S + + Sbjct: 63 ETEIRQIRDNFADERYRQENAKLSFYQTQNTTINEIETIL-DEPNGESLSKVLDAFWGQT 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + N + T I NA +++ N +Q + + + +I + + + E+ Sbjct: 122 QKLATNPAGLEERMTFIQNANVLIKKVNYIQESLQDYQTNLNMQIVSMVRRVNELVDEIH 181 Query: 172 ---------VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI------------ 210 +N + + + +E + I Sbjct: 182 TLNEKIIEEELNGVANANDYRDKRNNALDELSGYIDINYAEQPDSTVIVKISGSNGTALL 241 Query: 211 --------------VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256 ++ + + G LF+ ++ + ++S + Sbjct: 242 EGGFITKIDLEQTAPKSPYVNPIIRNTGDALFDFTVTSDTIKEAVTAANGNDSGALKALL 301 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDS-------VVPIFQNQLDEMARVLIGSFSEKD---- 305 + S +A + A+ ++P Q +LD + ++ +E Sbjct: 302 ISRGSIPANAATEWDDIAINDNYSVDAEGNSFIIPELQKKLDVFTKEIVMMMNESFSGYG 361 Query: 306 -------------------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR- 345 P A + + D+D + + P Sbjct: 362 VGLEKGIIGPPIFVPIYKAPAAPDMTKIAVDMNNITQADIDAYNYEMQQYYTAIEPHLTA 421 Query: 346 ------------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF----D 389 + L V N G +L+ + + + + D Sbjct: 422 MNIEVNTKLLAEGGYNHLGTVPIVDSDGNPNNPGNIGSNELVQDFLTKWGEPKTWYDEVD 481 Query: 390 PVAGINTNVT-------LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 P G+ T + ++ + + + + + ++ + + Sbjct: 482 PATGVKPKSTPKSKFLNVTDFYAELVTDIGQKGYIYSNKAAEKMEAVESVNNERWSMSAI 541 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + EELS ++K + +YN S +++ D M+ ++ + Sbjct: 542 SQDEELSMMMKYQYAYNASARMLTVLDGMMDVVINKM 578 >gi|224532252|ref|ZP_03672884.1| flagellar hook-associated protein FlgK [Borrelia valaisiana VS116] gi|224511717|gb|EEF82123.1| flagellar hook-associated protein FlgK [Borrelia valaisiana VS116] Length = 627 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 53/457 (11%), Positives = 144/457 (31%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + ++ N+ NA Y R+ + Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTTTPLYAPQLNRAKKQG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIMVQSIDRVKDELLNTRIIEESHRLGYWTSKDKFISMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +IGIS + + + + S+G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLIGISIENKQDPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N ++ + V+ GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTKWNILWSNNDKVNLKT------GKLGSLLHIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++L+ +A ++ +E + G L + + + Sbjct: 296 NEIDELNNIAVNIVELVNEIHRAGHGMDKKNGRNFFSQELKLTDAGGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNDIIEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFKIKHIEDSG 447 Score = 103 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 104/345 (30%), Gaps = 8/345 (2%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 ++ + D+EI+ EI L + + + I + L + Sbjct: 281 GKLGSLLHIRDEEIKNEIDELNNIAVNIVELVNEIHRAGHGMDKKNGRNFFSQELKLTDA 340 Query: 203 EIIGISTIVRNNNDMVVYTSDGTT-------LFETVPRDINFEKMNSYTVTSESNPIFID 255 + + + ++ + T L N + P + Sbjct: 341 GGRYDTNGNGQFDSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNDIIEIPYNAPDTVQ 400 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 V+ N +A +I + + V +N+ I N Sbjct: 401 DVINRINNSNAQVTARINSEGKFEIKAVKEQENENITFKIKHIEDSGLFLTKYTGILNES 460 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYPDL 374 G A K++D T ++P + D + Sbjct: 461 GPEGAYDYKNIDTIEKLTPKSTYSISPLKNPAAWIKVADTIDSDPSKIAAGIKNPTNEIS 520 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 I + + + I N+TL +Y N+ + S + +++ Sbjct: 521 IGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDLTD 580 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 581 LRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625 >gi|327393477|dbj|BAK10899.1| flagellar hook-associated protein 1 [Pantoea ananatis AJ13355] Length = 546 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 75/548 (13%), Positives = 166/548 (30%), Gaps = 75/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI N Y R+ T+ + V V Sbjct: 1 MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTILAEANSTLQGKSYYGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L S+ + + + + + I +++ Sbjct: 61 TGVQREYDSFIAAQLRGSSATYNAAN--TQYSQVSNIDDLMSTSTTNLSTAIQGFFSNMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ ++++ N++ +V F T A+ + ++ + I ++ + F ++++ Sbjct: 119 NVVSNANDPAARQSMLSNSQGLVNQFQTQAQYLTNMQNSVNTNIASDVDQINTFTTQISN 178 Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I TA+ +D LDQRD L+ ++ I+G++ + + V ++G +L Sbjct: 179 LNQQIAKLSTANGATPNDLLDQRDQLVNGLNNIVGVTVS-QQDGSYTVSMANGLSLVNGF 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S +T + S++ G + +L R + + QNQL Sbjct: 238 QSTKLVAMPSSSDLTRTTVGYVDPQAGNVQLPESSITTGSLGGMLSFRSQDLDLAQNQLG 297 Query: 292 EMARVLIGSFSEKDPIAGNSE----------NVPGLFIADGIKDLDNKLCQGISETICVN 341 ++A SF+ +S P + + Sbjct: 298 QLAAAFTTSFNAVHKQGFDSNGNQGVDFFNIGTPTAQGDSKNTSSATLTAAWTNTSALQA 357 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-------- 393 Y + + + D + P A Sbjct: 358 SNYTVSYDGTNWSATRLSDNSKTTLTPTTSGGVTTLNLDGMSLTVNGTPNAKDSFLVKPV 417 Query: 394 -------------------------------------------INTNVTLLEYARNSIGW 410 +N N T+ + + Sbjct: 418 QNVVNGMSVAITSGSQIAAAAATGGESDNRNAQKLLALQDAKIVNGNATISQAYGAMVST 477 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + Q V ++ + GVNL EE + L K +Q Y + +++ Sbjct: 478 VGNKTQALKTASTTQQNVVTQLTNRQQSVSGVNLDEEYANLTKYQQYYMANAQVLKTAST 537 Query: 471 MLQTLLEG 478 + LL Sbjct: 538 VFDALLSI 545 >gi|289548869|ref|YP_003473857.1| flagellar hook-associated protein FlgK [Thermocrinis albus DSM 14484] gi|289182486|gb|ADC89730.1| flagellar hook-associated protein FlgK [Thermocrinis albus DSM 14484] Length = 516 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 66/523 (12%), Positives = 158/523 (30%), Gaps = 54/523 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61 L A F + RN+ NA N +Y + + +P + + Sbjct: 2 LGATFGIVSQGLQILRKAIEIRNRNVLNASNPDYAQENPRIESFAPVGIKLEDVERVRNF 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + S + E + + YI+ + + K+ + Sbjct: 62 YLLSERNNRLSVVNYLEERIKKGEAVEDLFQEFTGGVGGAEYINNFFRAFQDLMKDPTNV 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI---- 177 ++ A ++ ++ ++ ++ + + +L +N I Sbjct: 122 GARADLVRQANTLMGYIRDRKGDMDRVFNSTVYNLQRYVGRVNELTQKLAQINRDILTTY 181 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 +S D + LD+RD LL+++SE+I + + + V + G L E Sbjct: 182 ARTYSSGKDYKNLLDERDRLLRELSELINVRVQEDDIGRVRVEMAGGFLLVEEGRS---- 237 Query: 238 EKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + T + S +F + S+ + + G+IK ++ + ++ LD +A+ Sbjct: 238 ---WTITYDASSRKVFWNSKDGSTVDVTGHINGGRIKGAVEFL-KDLDLYLQGLDNVAKR 293 Query: 297 LIGSFSEKDPIAGNSENVPGLFI-----------------------ADGIKDLDNKLCQG 333 LI + + L + Sbjct: 294 LISRVKLPVIKGSDQYYWTTVKNSPGDPIGESGSITLVGVSSVTVSYQPSDTLQDIANII 353 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 ++ P VS + + + G + + + Sbjct: 354 NAQNAGFTASVVQEPDGTYTLRIVSSDPSYQITDSNGNIGVKVFTGTGLQDGGVNPQLPS 413 Query: 394 INTN-----------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + N L + + + + ++ H + + + ++ Sbjct: 414 LMGNLDYSVADRFFSLSSRWWEDLKDLYQKLVSDISSTQNTLKKQHEIEKALLDSLNARL 473 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S GV++ +E ++++++SY K + D +L+T L V Sbjct: 474 SELQGVSIDQEFMEIMQLQRSYEALAKTVSAMDDLLRTTLNMV 516 >gi|33592479|ref|NP_880123.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|33572125|emb|CAE41667.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|332381896|gb|AEE66743.1| flagellar hook protein FlgE [Bordetella pertussis CS] Length = 473 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 53/479 (11%), Positives = 115/479 (24%), Gaps = 14/479 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + N ASQ I NI N+ + + V + N+ Sbjct: 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + D + Y N Sbjct: 62 TVGNISTTGGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179 L + + + + + + Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPPEDGLVELDG 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T +A + G I + + G ++ + I F+ Sbjct: 177 TTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGYQPYKPLVAGIPFDP 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N + T + D + S K + + + + Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQAMQVNGGASQT 296 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + N + A+ + I+ + QY S+ + + + Sbjct: 297 LNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLEITVSYNGVTQYGSDFAP-KVVQNGYS 355 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ L+ Y + + +A N L N W+E + S Sbjct: 356 SGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNN--AWVETSESGQA 413 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L I+ V++ EL +I +++Y + + I D+++Q L+ Sbjct: 414 TLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472 >gi|302382561|ref|YP_003818384.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides ATCC 15264] gi|302193189|gb|ADL00761.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides ATCC 15264] Length = 707 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 133/404 (32%), Gaps = 10/404 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL ++ N A + A QQ + N+ N + YVR+ T V V Sbjct: 1 MSLNSILNIANSGLQAAQQQLRVVSDNVSNVNTPGYVRKIAEQTSLTTQGVGSGVEVTRI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R + + +Q + + + D ++ I ++ S + + Sbjct: 61 RLATDRFLQAASLSAGAEAARQGVRYELYDRIQSLFGDPGGDSGFFSQIDEVFSSFAASA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + + + A+ V + ++Q +R DAD I+ I L ++ +N Sbjct: 121 EDPTSGPRRQDALFKAQAVFDEATRISGQIQAVREDADGRIQSAIEKANGLLQQIETLNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I T DA Q+ L+ ++S ++ + R+ + + T G L + Sbjct: 181 DIARATVLNGDASGAQTQQARLVDELSTLLDVQVTQRSVGGVSIRTGAGIQLAGNGAATL 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + + N I++ + + G+IK LL++RD+ P +L E+ Sbjct: 241 EYHRAGTVNAETSFNDIYVTEKGGTPRALADGLKSGEIKGLLELRDNEAPATAERLAELV 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + L + + LD L T NP+ Sbjct: 301 TKVADELNRAHNANSSVPAPTTLTGRNVGQALDTALTGFAGRT----TVAVVNPTTGAIT 356 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 F + + G + N A Sbjct: 357 TRADIVFSGSTLTINGTASTPASFLTDLNTALGGAATATFTNGA 400 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 48/386 (12%), Positives = 100/386 (25%), Gaps = 9/386 (2%) Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + ++ N + + N +A D + + Sbjct: 329 GQALDTALTGFAGRTTVAVVNPTTGAITTRADIVFSGSTLTINGTASTPASFLTDLNTAL 388 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNN 215 + + A A R +++++ + Sbjct: 389 GGAATATFTNGALKITAAGANGVAVADDPTTPSSKAGRGFSHYFGLNDLVSAERPALFDT 448 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + G T ET+ E + + P V + + G + Sbjct: 449 GLTTTSQHGFTPGETLTFRFTSETGSRMRDIEVAVPAGTGTVGELISALNNTTTGVGRYG 508 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 D + + + + VP + + + + Sbjct: 509 TFALDGSG-------ELKFTGFGDPAARMSVLEDTTTQVPSGVSVTELFGIGGGVRASRA 561 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI- 394 + + R +PS L +G D+ F Sbjct: 562 DGFTIRTDIRQSPSKLALAQLNLSATAGTAALSSGDGRGALLLADAGQVTARFSAAGTSP 621 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 ++++ YA G + + + +Q + SN GVNL EEL + Sbjct: 622 GGSLSVSRYASELSGEIGGTAASAKTRQQSAQALATEADARQSNYEGVNLDEELVLMTTY 681 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q++N S +LI M TLL V+ Sbjct: 682 QQAFNASARLIQAAQDMYDTLLGMVR 707 >gi|16802747|ref|NP_464232.1| flagellar hook-associated protein FlgK [Listeria monocytogenes EGD-e] gi|224501990|ref|ZP_03670297.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL R2-561] gi|16410094|emb|CAC98783.1| lmo0705 [Listeria monocytogenes EGD-e] Length = 506 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 76/510 (14%), Positives = 154/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G Y ++ + W + + + Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFAQSSGKWILNPAITSNADNKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S + ++ES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|146296289|ref|YP_001180060.1| hypothetical protein Csac_1266 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409865|gb|ABP66869.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 484 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 38/494 (7%), Positives = 111/494 (22%), Gaps = 26/494 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47 ++ + + I NI N + + T S Sbjct: 1 MMRSMFSSITSLRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVIKAASAPDTTSG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106 + Q ++ ++ ++ + + +P Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + D + + ++ + +IS Sbjct: 121 FSLDKMGNLVTANGLNVLGWMADPVNNQIDTTKSPSKINILAYPTLAPKATDKISFDGNL 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ I D ++ + V + Sbjct: 181 SADTVAYTGQIAKYEDL------LNVPADSKYSMSFKVYDSQGKEHTLQLIFVKNGNNQW 234 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + + + I + + G+ + ++ Sbjct: 235 EWFVDAPRVKKNIGTAEVYAYVDDMIDANNNYDEFIARGTITFGQAGKVFDDENTPNVEG 294 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + DN + + Sbjct: 295 IQITGGRVYDSANGTFTINFVGNAVNPITFKVNSSQFDVNDNTNIAFFLKNLTQFGNM-- 352 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + S + N+ + Y + N+ +A L N Sbjct: 353 DSSIRVAQMTGYSAGSLQGFNIDATGKITGIYSNGLNQLIGQIAIATFANPAGLQRIGDN 412 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 ++ S ++ IS+ V+L +E + +I ++ Y + ++I Sbjct: 413 L--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVIT 470 Query: 467 FTDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 471 ASDELLQDLVNIKR 484 >gi|313672183|ref|YP_004050294.1| flagellar hook-associated protein flgk [Calditerrivibrio nitroreducens DSM 19672] gi|312938939|gb|ADR18131.1| flagellar hook-associated protein FlgK [Calditerrivibrio nitroreducens DSM 19672] Length = 582 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 55/414 (13%), Positives = 135/414 (32%), Gaps = 16/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + A NI N + + Y R+ + T + Sbjct: 4 IFGILHTGVSGLYVAQSGIDVTGHNIANLNTEGYSRQRVIITTESPLNVRPGPFGRGAKL 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 ++ K L +S++ L++ ++ + + + + ++ Sbjct: 64 DAVVRTYDDVLAKTLRNETSSLNYWENLRTSMDNIKIYFNELESGSGLGDNLKEYFNAWS 123 Query: 113 SYSKNL-----SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + +T+I+ A + S ++ IR D+ I+ +I + Sbjct: 124 DLSNTAPDNSDESYVKRRTLIEKATTLTMKIRESYNNLEGIRRQNDQNIKNKIEKINDLA 183 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + +N + + + A+D D+RD LL +S+ + + ++N + V+ + Sbjct: 184 KNIAFLNYQVAKSESGGNIANDLRDKRDKLLDDLSKEVNFVSSEQSNGQISVFIGGIAIV 243 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + + N + G I ++ RDS + + Sbjct: 244 DSSESNKLFAVENPNNNDHFDIYWGAGGIDKPQINITDKIIGGAIYGEIKTRDSYIGKYT 303 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLDE+A LI S ++ I + + +G+ + K + + + Sbjct: 304 AQLDELASSLIVSTNQLHSIGQGLKRFDQITSNNGVINPSYKFNENTGKFNYPINKGTFR 363 Query: 348 PSFLRDGGSVSKKFLWNV-KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + V + +V +I + A ++ N T+ Sbjct: 364 IALYNSENQVENYYDIDVDPEKDSLNSIILKISSADGDPSGGKIQAFLSENNTI 417 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/427 (10%), Positives = 118/427 (27%), Gaps = 15/427 (3%) Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R +N + + + + + + N KL D L Sbjct: 163 GIRRQNDQNIKNKIEKIN---DLAKNIAFLNYQVAKSESGGNIANDLRDKRDKLLDDLSK 219 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 +S + + + ++ + ++ + + + + Sbjct: 220 EVNFVSSEQSNGQISVFIGGIAIVDSSESNKLFAVENPNNNDHFDIYWGAGGIDKPQINI 279 Query: 174 NDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 D I ++ + L +++ + +ST ++ G L Sbjct: 280 TDKIIGGAIYGEIKTRDSYIGKYTAQLDELASSLIVSTNQLHSI--------GQGLKRFD 331 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N +N +E+ F ++ + D V ++ L+ Sbjct: 332 QITSNNGVINPSYKFNENTGKF--NYPINKGTFRIALYNSENQVENYYDIDVDPEKDSLN 389 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + + + I + D + + V S Sbjct: 390 SIILKISSADGDPSGGKIQAFLSENNTIKITVADGYTFTFKEDTSNFLVASGLNSFFKGT 449 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + N + N ++ NVT+ E+ + + Sbjct: 450 SAKDIDLSSLVKNDSGFIATSLTGEPGDNQNALNISNIKYKPLSNNVTIDEFYTTFVSLI 509 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +++ + + V + GV++ EE + +IK +++Y + + I D+M Sbjct: 510 GSDKAQVDTFYDTKKNVVQELKLKLDQIQGVSMDEEYTNMIKFQKAYEANARFITAVDQM 569 Query: 472 LQTLLEG 478 + L+ G Sbjct: 570 IDKLING 576 >gi|47095271|ref|ZP_00232882.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes str. 1/2a F6854] gi|254900059|ref|ZP_05259983.1| flagellar hook-associated protein FlgK [Listeria monocytogenes J0161] gi|254911388|ref|ZP_05261400.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935715|ref|ZP_05267412.1| flagellar hook-associated protein FlgK [Listeria monocytogenes F6900] gi|47016342|gb|EAL07264.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes str. 1/2a F6854] gi|258608298|gb|EEW20906.1| flagellar hook-associated protein FlgK [Listeria monocytogenes F6900] gi|293589325|gb|EFF97659.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 506 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 76/510 (14%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G Y ++ + W + + + + Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVISADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S + ++ES S+ GVN+ EE++ Sbjct: 417 KTDKSIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|291617026|ref|YP_003519768.1| FlgK [Pantoea ananatis LMG 20103] gi|291152056|gb|ADD76640.1| FlgK [Pantoea ananatis LMG 20103] Length = 546 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 75/548 (13%), Positives = 165/548 (30%), Gaps = 75/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI N Y R+ T+ + V V Sbjct: 1 MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTILAEANSTLQGKSYYGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L S+ + + + + + I +++ Sbjct: 61 TGVQREYDSFIAAQLRGSSATYNAAN--TQYSQVSNIDDLMSTSTTNLSTAIQGFFSNMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ ++++ N++ +V F T A+ + ++ + I + + F ++++ Sbjct: 119 NVVSNANDPAARQSMLSNSQGLVNQFQTQAQYLTNMQNSVNTNIASNVDQINTFTTQISN 178 Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I TA+ +D LDQRD L+ ++ I+G++ + + V ++G +L Sbjct: 179 LNQQIAKLSTANGATPNDLLDQRDQLVNGLNNIVGVTVS-QQDGSYTVSMANGLSLVNGF 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S +T + S++ G + +L R + + QNQL Sbjct: 238 QSTKLVAMPSSSDLTRTTVGYVDPQAGNVQLPESSITTGSLGGMLNFRSQDLDLAQNQLG 297 Query: 292 EMARVLIGSFSEKDPIAGNSE----------NVPGLFIADGIKDLDNKLCQGISETICVN 341 ++A SF+ +S P + + Sbjct: 298 QLAAAFTTSFNAVHKQGFDSNGNQGVDFFNIGTPTAQGDSKNTSSATLTAAWTNTSALQA 357 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-------- 393 Y + + + D + P A Sbjct: 358 SNYTVSYDGTNWSATRLSDNSKTTLTPTTSGGVTTLNLDGMSLTVNGTPNAKDSFLVKPV 417 Query: 394 -------------------------------------------INTNVTLLEYARNSIGW 410 +N N T+ + + Sbjct: 418 QNVVNGMSVAITSGSQIAAAAATGGESDNRNAQKLLALQDAKIVNGNATISQAYGAMVST 477 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + Q V ++ + GVNL EE + L K +Q Y + +++ Sbjct: 478 VGNKTQALKTASTTQQNVVTQLTNRQQSVSGVNLDEEYANLTKYQQYYMANAQVLKTAST 537 Query: 471 MLQTLLEG 478 + LL Sbjct: 538 VFDALLSI 545 >gi|224498787|ref|ZP_03667136.1| flagellar hook-associated protein FlgK [Listeria monocytogenes Finland 1988] gi|254829362|ref|ZP_05234049.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL N3-165] gi|254830304|ref|ZP_05234959.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 10403S] gi|284801035|ref|YP_003412900.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 08-5578] gi|284994177|ref|YP_003415945.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 08-5923] gi|258601775|gb|EEW15100.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL N3-165] gi|284056597|gb|ADB67538.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 08-5578] gi|284059644|gb|ADB70583.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 08-5923] Length = 506 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 76/510 (14%), Positives = 154/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G Y ++ + W + + + Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S + ++ES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|229195951|ref|ZP_04322704.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1293] gi|228587510|gb|EEK45575.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1293] Length = 420 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 60/479 (12%), Positives = 144/479 (30%), Gaps = 71/479 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61 A + +N+ N YVR+ V + Sbjct: 1 MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDE 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + K + S + S + E M N S + + ++ +KN + Sbjct: 61 VKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQS 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 T+I + N A+ + + A ++IE ++ R L N I Sbjct: 120 NYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQ 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + LD+RD ++ ++S+ + I + N + L Sbjct: 178 AGTQVPNQLLDERDRIVTEMSKYVNIEVSYESMNPNIASVRMNGVL----------TVNG 227 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + N V + G IK+ + + + ++ L+E+ + Sbjct: 228 QDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMGSVKNQV 286 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + ++ + +NP++ ++ S ++ + K Sbjct: 287 NTVM--------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKL 326 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ + I + ++S+ + Sbjct: 327 AGITDEDYKDG-------------------------LSYKKALDQFIVKVASDKSEVNGY 361 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 362 QKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420 >gi|116328901|ref|YP_798621.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330492|ref|YP_800210.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121645|gb|ABJ79688.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124181|gb|ABJ75452.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 464 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 36/492 (7%), Positives = 108/492 (21%), Gaps = 42/492 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ + N + I NI N + + Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + ++ E + Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAMSGEGFFIVKDGDKQFYTRAGAFNL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + + + ++ F S+ ++ I + + + Sbjct: 121 DKNGYYVNPANGLKVQGWNARLDDKGNKFINSSASIEDIIIPVYSKEPARAT---SQIDF 177 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV-LLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + +N + D + + I T Sbjct: 178 KSNLNSSAPAVPPDATQEEITAMINDPDPKMRRGHVTTIKTFDDQGIQREFKMEFYKVRD 237 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T ++ + + ++ D + + Sbjct: 238 NTWKARLSMTDATQLSADVSGTGGQNTQLPGNTELEFGFTP----------DGKLVYVSD 287 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +D M + + + L + + + + Q+ S+ Sbjct: 288 GVDSMNSGKLNAKVSFRIAGNPAVQSFDLNLGE-------------AGMVDGITQFSSDF 334 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + ++ + + + + A N L + Sbjct: 335 TTKAVKQDGYTMGYLESFSIDNSGTITGVFSNGVRQPLARIATAVFNNPAGLDKAGDTMF 394 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S ++ I+ V+L ++ + +I ++ + +++ I + Sbjct: 395 AY--SMNSGEPNIGEAGVQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTS 452 Query: 469 DKMLQTLLEGVK 480 D+M+Q +L + Sbjct: 453 DQMIQEVLGLKR 464 >gi|134095091|ref|YP_001100166.1| flagellar hook-associated protein FlgK [Herminiimonas arsenicoxydans] gi|133738994|emb|CAL62042.1| putative flagellar hook-associated protein 1 FlgK-like [Herminiimonas arsenicoxydans] Length = 659 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 61/407 (14%), Positives = 132/407 (32%), Gaps = 15/407 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52 + + + A++ A A+ NI N Y R+ + V Sbjct: 1 MSNLLSIAKSGLAAAHAGIATTGHNIANQATPGYSRQLVIQASLGGQNIGGGYIGNGTNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T R + + + S+ Q M AD + + I+ ++ Sbjct: 61 ETVRRIYNDFLGAQVVSAQSSKSQLDTYYMQINKVNNMLADP--SVGLSPVIADFFKGIQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + ++ AE +V F + ++ +R + EI ++N+ + ++ Sbjct: 119 DLVANPGIAPSRQAMLSGAEALVARFQSLDGQLTGMRNGVNSEIAGAVTNINAYAKQIGQ 178 Query: 173 VNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +NDAI S +D LDQRD+L+ ++++ ++ + + + + V+ +G L + Sbjct: 179 LNDAISKAQNGSGQPPNDLLDQRDLLIGELAKQSKVTLV-QQDGNYNVFIGNGQPLVVGL 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S +G V S++ G + L + R + QN L Sbjct: 238 STYELTAVPSSTDPGRMQVGYIANGKTV-ILPESSLTGGNLGGLFEYRSKTLDPIQNSLG 296 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L +F+E+ + + G + + + + Sbjct: 297 RIALGLASTFNEQHRLGQDQNGKFGGDFFNMATPQISSSKENTGNAKIDATINSVDKLTT 356 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V L+ + D D ++ Sbjct: 357 SDYRLSYDGSNYTVTRLSDNVAISASNMDFPATPIEMDGISFSMDTS 403 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 45/457 (9%), Positives = 116/457 (25%), Gaps = 22/457 (4%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + + NV + + + L A S+ R+ + A + + + Sbjct: 212 SKVTLVQQDGNYNVFIGNGQPLVVGLSTYELTAVPSSTDPGRMQVGYIANGKTVILPESS 271 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + ++ + ++ LG+ + A + + K D Sbjct: 272 LTG-GNLGGLFEYRSKTL--DPIQNSLGRIALGLASTFNEQHRLGQDQNGKFGGDFFNMA 328 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +IS+ + + + D D + + ++S+ + IS + Sbjct: 329 TPQISSSKENTGNAKIDATINSVDKLTTSDYRLSYDGSNYTVTRLSDNVAISASNMDFPA 388 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP-------------IFIDGVVVSSNQ 263 + + +T + + + N I + ++ Sbjct: 389 TPIEMDGISFSMDTSVGAGTMAAGDEFIIKPTINGASGLSVLIKDIKQIAAGTPIRTNAP 448 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + G I A ++ + P + G Sbjct: 449 IANTGTGAISAGTINAGFDAVTAAALPVDLIYDAAANTFSGFPAGMDVTVNVGGTKTVYP 508 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 L + + + N G + + Sbjct: 509 AALPPAETTVPYTAGAIVSFGGAEIKISGTPADGDTFSISANTNGDGDNRNMLLLGELQT 568 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 KN + + + + + + + + + + GVN Sbjct: 569 KNVLQ------GGTASYNSAYSQLVSQVGNKTRELETNSLAEGALLKQMQTAQQSESGVN 622 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L EE + L++ +Q+Y S K++ M L+ + Sbjct: 623 LDEEATNLLRYQQAYQASGKVMQAVSDMFDVLISLGR 659 >gi|187934928|ref|YP_001885009.1| flagellar hook-associated protein FlgK [Clostridium botulinum B str. Eklund 17B] gi|187723081|gb|ACD24302.1| flagellar hook-associated protein FlgK [Clostridium botulinum B str. Eklund 17B] Length = 604 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 48/422 (11%), Positives = 119/422 (28%), Gaps = 20/422 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L F A+ N + NI NA+ + R+ + T + Sbjct: 3 GLFDTFTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + + D + + +G + F E + + ++ + Sbjct: 63 QVGTGAEISSIERIRDSFIDFQVRHENGKLGNYDVQDKFLYRVENIFG-EPSDSGIQQLL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + DS + SK + + A + N + ++ K +DA + +++ + ++ Sbjct: 122 GEFFDSFQELSKKPHDSSTKTIALQKASALADALNNTYTQLDKQLSDAQELLQVNVKDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A +D +D RD LL ++S GI+ + + + Sbjct: 182 NYLDQINELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKESIDLKLEGY 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 V +N + + + + L +++ Sbjct: 242 QNGKNPVNNLVNSSPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGNLNAKEETITI 301 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + A+ + S ++ + G+ + + G I + Sbjct: 302 ECADE--DEAKKIAESLTQNRVLMGDKDGIVGKPIPPATTVTMSSDDINKKILQTHKLDV 359 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 N + + GY ++ Sbjct: 360 DVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTPTDKYELVF 419 Query: 405 RN 406 N Sbjct: 420 TN 421 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 46/432 (10%), Positives = 121/432 (28%), Gaps = 4/432 (0%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + +++ +S + ++ + T + Sbjct: 175 VNVKDVNNYLDQ-INELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKES 233 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + +++ + T V+ + D + + L Sbjct: 234 IDLKLEGYQNGKNPVNNLVN--SSPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGN 291 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + I + A + +A + + + GI V +SD Sbjct: 292 LNAKEETITIECADEDEAKKIAESLTQNRVLMGDKDGIVGKPIPPATTVTMSSDDINKKI 351 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + + GV + A L +++ Q Sbjct: 352 LQTHKLDVDVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTP 411 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 D+ V I+ ++ + + +S + + Sbjct: 412 TDKYELVFTNGADVTGLTGVAKNEKLEEKISAKNITVNKDVLKDVSLLNTSSKDEAGEGN 471 Query: 350 FLRDGGSVS-KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 R + N+ N + + + ++ + T+ Y + I Sbjct: 472 GDRALAIANLINVKMNLTNSKDIKNRNDFFANTKVNFDDGINMISSAEGSTINAYYKEII 531 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L + + + + + GV+L EE++ LI+ + +Y+ + K++ Sbjct: 532 NTLGVSAETASRNVTSQTKILKDLEMQKLSVSGVSLDEEMTNLIQFQHAYSANAKVVSTV 591 Query: 469 DKMLQTLLEGVK 480 D++L ++ G+K Sbjct: 592 DELLDVVINGLK 603 >gi|24215548|ref|NP_713029.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45657072|ref|YP_001158.1| flagellar hook protein FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196693|gb|AAN50047.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45600309|gb|AAS69795.1| FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 464 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 37/492 (7%), Positives = 110/492 (22%), Gaps = 42/492 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ + N + I NI N + + Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + ++ E + Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAISGEGFFIVKDGDKQFYTRAGAFNL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + + + ++ + SA ++ I + + + Sbjct: 121 DKNGYYVNPANGLKVQGWNSRLDDKGNKYINSAASIEDIIIPVYSKEPARAT---SQIDF 177 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV-LLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + +N + D + + I+T Sbjct: 178 KSNLNSSAPAVPPDATQEEITAMINDPDPKMRRGHVTTINTFDDQGIQREFKMEFYKVRD 237 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T ++ +V + ++ D + + Sbjct: 238 NTWKARLSMTDSTQLSVDVSGTGGQNTQLPGNTELEFGFTP----------DGKLVYVSD 287 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +D M + + + L + + + + Q+ S+ Sbjct: 288 GVDSMNSGKLNAKVSFRIPGNPAIQNFDLNLGE-------------AGMVNGITQFSSDF 334 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + ++ + + + + A N L + Sbjct: 335 TTKAVKQDGYTMGYLESFSIDNSGTITGVFSNGVRQPLARVATAVFNNPAGLDKAGDTMF 394 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S ++ I+ V+L ++ + +I ++ + +++ I + Sbjct: 395 SY--SMNSGEPNIGEAGVQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTS 452 Query: 469 DKMLQTLLEGVK 480 D+M+Q +L + Sbjct: 453 DQMIQEVLGLKR 464 >gi|51598442|ref|YP_072630.1| flagellar hook-associated protein FlgK [Borrelia garinii PBi] gi|51573013|gb|AAU07038.1| flagellar hook-associated protein [Borrelia garinii PBi] Length = 627 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 141/457 (30%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFISMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + + + + S+G Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N + + + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTKWNIFWANNDKANLET------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L ++ + + Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDERGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGILKFEATNSNEIIEIPYNAPDTVQDLITRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSG 447 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 114/372 (30%), Gaps = 14/372 (3%) Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + K I A N T ++ + D+EI+ EI+ L + + + + I Sbjct: 258 TNGPTRTKWNIFWANNDKANLET--GKLGSLLNIRDEEIKNEINELNNLAANIIELVNEI 315 Query: 178 KFKTASK---------HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 D+R + I + N+ ++ L Sbjct: 316 HETGHGMDKKSGRSFFSQELKLTDERGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLG 373 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 N + P + ++ N +A +I + + V +N Sbjct: 374 FYGILKFEATNSNEIIEIPYNAPDTVQDLITRINNSNAQVTARINSEGKFEIKAVKEQEN 433 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + I N G A +++D T ++P Sbjct: 434 ENITFRIKHIEDSGLFLTKYTGILNESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAA 493 Query: 349 S-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + D + + N I + + + I N+TL +Y N+ Sbjct: 494 WIKVADIIDLDPSKIAAGINSPTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANT 553 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + S + +++ + GVN EEL+ +I+ +Q++ ++K I Sbjct: 554 ASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITV 613 Query: 468 TDKMLQTLLEGV 479 + +++ T++ + Sbjct: 614 SAELIDTIINKM 625 >gi|188589591|ref|YP_001920169.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3 str. Alaska E43] gi|251779172|ref|ZP_04822092.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499872|gb|ACD53008.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3 str. Alaska E43] gi|243083487|gb|EES49377.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 604 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 47/422 (11%), Positives = 119/422 (28%), Gaps = 20/422 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L F A+ N + NI NA+ + R+ + T + Sbjct: 3 GLFDTFTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + + D + + +G + F E + + ++ + Sbjct: 63 QVGTGAEISSIERIRDSFIDFQVRHENGKLGNYDVQDKFLYRVENIFG-EPSDSGIQQLL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + DS + SK + + A + N + ++ K +DA + +++ + ++ Sbjct: 122 GEFFDSFQELSKKPHDSSTKTIALQKASALADALNNTYTQLDKQLSDAQELLQVNVKDVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A +D +D RD LL ++S GI+ + + + Sbjct: 182 NYLDQINELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKESIDLKLEGY 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 V +N + + + + L +++ Sbjct: 242 QNGKNPVNNLVNSNPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGNLNAKEETITI 301 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + A+ + S ++ + G+ + + G + + Sbjct: 302 ECADE--DEAKKIAESLTQNRVLMGDKDGIVGKPVPPATTVTMSSDDINKKILQTHKLDV 359 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 N + + GY ++ Sbjct: 360 DVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTPTDKYELIF 419 Query: 405 RN 406 N Sbjct: 420 TN 421 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/432 (10%), Positives = 121/432 (28%), Gaps = 4/432 (0%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + +++ +S + ++ + T + Sbjct: 175 VNVKDVNNYLDQ-INELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKES 233 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + +++ + T V+ + D + + L Sbjct: 234 IDLKLEGYQNGKNPVNNLVN--SNPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGN 291 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + I + A + +A + + + GI V +SD Sbjct: 292 LNAKEETITIECADEDEAKKIAESLTQNRVLMGDKDGIVGKPVPPATTVTMSSDDINKKI 351 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + + GV + A L +++ Q Sbjct: 352 LQTHKLDVDVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTP 411 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 D+ + I+ ++ + + +S + + Sbjct: 412 TDKYELIFTNGADVTGLTGVAKNEKLEEKISAKNITVNKDVLKDVSLLNTSSKDEAGEGN 471 Query: 350 FLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 R + N+ N + + + ++ + T+ Y + I Sbjct: 472 GDRALAIANLRNVKMNLTNSKDIKNRNDFFANTKVNFDDGINMISSAEGSTINAYYKEII 531 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L + + + + + GV+L EE++ LI+ + +Y+ + K+I Sbjct: 532 NTLGVSAETASRNVTSQTKILKDLEMQRLSVSGVSLDEEMTNLIQFQHAYSANAKVISTV 591 Query: 469 DKMLQTLLEGVK 480 D++L ++ G+K Sbjct: 592 DELLDVVINGLK 603 >gi|213024454|ref|ZP_03338901.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 403 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 128/387 (33%), Gaps = 14/387 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 12 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 71 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD + + + SL+ Sbjct: 72 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 129 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I AE +V F T+ + ++ + I ++ + + ++ Sbjct: 130 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 189 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 190 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 249 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S T + + + G + LL R + +N L Sbjct: 250 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 309 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + +++ G + +T+ + + + Sbjct: 310 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 369 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINH 377 + Sbjct: 370 QATDYKIVFDGTDWQVTRTADNTTFTA 396 >gi|51894116|ref|YP_076807.1| flagellar hook-associated protein [Symbiobacterium thermophilum IAM 14863] gi|51857805|dbj|BAD41963.1| flagellar hook-associated protein [Symbiobacterium thermophilum IAM 14863] Length = 558 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 61/442 (13%), Positives = 142/442 (32%), Gaps = 16/442 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61 + + F A ++ + NI NA++ NY RR + P + Sbjct: 4 GISSGFYTATRALQSSQWAMHLHLENIANANDPNYTRRTLENRVDPFG-RLPEVVRMRDL 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 D S+ G + A E + D I + D+ ++ S++ +++ Sbjct: 63 FIDFQYRRAQSSAGYASIRADLMARVEDIFG-DPIEGGLAQAIDRFFDAFKAVSEDPADE 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 +L I+ VQ+ + + ++ I++ +++I+ ++ + L L +N I Sbjct: 122 VLRIEAIEAGRRFVQHIHEAMSQLTLIKSQINEKIQGAVTEINAHLENLRNLNSRIATMV 181 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S A D +DQRD +L +++ + G + + V + ++ Sbjct: 182 GSSEMAADLMDQRDRVLDELARLTGARVTYLEDGTVRVMI-GSVPAVDGTAINLLEVVEG 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + + G + ALL++RD + ++D++A+ + Sbjct: 241 ENGPTVKWQGFNLPAYS---------GHGVLSALLEMRDGDLQHVIAEVDKLAKNVAREV 291 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + G D+ + T + L+ G+++ + Sbjct: 292 NYWHRQGYDLDGHEGGDFFLIQDDVPGGVYVHPDLTPRKIAA-AGDEQALQMDGTIADRI 350 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + D G + +V + Sbjct: 351 YQLSYGMWPQYAGEYTWTDPDGPAIEKTLTLGKDLSVKFVHTY--LDSETGNYV-TVEQR 407 Query: 422 HMKSQVVFNHISESYSNTVGVN 443 Q V I+ + + V+ Sbjct: 408 GTWYQNVDGSITITLTEEKTVD 429 >gi|226225729|ref|YP_002759835.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] gi|226088920|dbj|BAH37365.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] Length = 506 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 41/508 (8%), Positives = 119/508 (23%), Gaps = 32/508 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + I NI N + + + R Sbjct: 1 MLRSLYAGVSGLRNNQVRMDVIGNNIANVNTVAFKAGRVTFKEGFAQLLAGASRPPGDQG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + L + N S + Sbjct: 61 GINPIQIGLGMQIGSIDQIFNQGNLETTGLNTDIAIQGDSFFVVRKGNQSFYTRAGNFQV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + + ++ + + NL Sbjct: 121 DALGQLVSPANGFIVQGRMYENGQLQDGIQDIRLPFGQKVSANPTTDMKLAGNLNASAPV 180 Query: 170 LTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + A D + ++ + + ++ Sbjct: 181 FQGDFNDPMDRALPINEKAWTETQIGVFDSQGTKHDVKLQMWKTGPNSWDWRIDPIASAQ 240 Query: 224 GTTLFETVPRDINFEKMNSYTVTSE----------SNPIFIDGVVVSSNQGSAVPKGKIK 273 + + + + E + + + S P + Sbjct: 241 TFEVETDGNSPPSDIPLPTPPAGYEVLPDNVRVYSATGVEYNNPADYSFSAGPPPAVQFT 300 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 A + + + + D D + N+ ++ Sbjct: 301 ANMPVNSQIKIGYFMSPDSATPSENSGTFTFDNAGLLNTNISASLNFAVPGANPVRIDLT 360 Query: 334 ISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + Q+ S + + + + ++ + + + + +A Sbjct: 361 LGGGVNGLTQFASTSSTAVLRDQNGYTAGTLQNFSIDRFGLITGFFTNGTTSPLARIVLA 420 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N LL N + E S L + + ++ V+L +E + +I Sbjct: 421 DFNNPSGLLRIGDNM--YQESANSGGAVLGFALEGSQSQMTSGALEMSNVDLAQEFTNMI 478 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + K++ +D+MLQ L+ + Sbjct: 479 VAQRGFQANGKVVSTSDEMLQELMTIKR 506 >gi|229160702|ref|ZP_04288694.1| Flagellar hook-associated protein FlgK [Bacillus cereus R309803] gi|228622717|gb|EEK79551.1| Flagellar hook-associated protein FlgK [Bacillus cereus R309803] Length = 432 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 147/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNIASAGASNGHMPAQRIGN 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQYNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVNRLAKNLATAEIQTTEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N +V L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYADIEVSYESMNPNIVSVRMNGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVEIYGSEIPLTSGAIQSAIDTKAK-IAGYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L++ + + + ++ + +NP++ + Sbjct: 286 NLEDFMSSVKTQVNTVM--------------------GKDFFVGDYAQEMKLNPEFAQDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K +T + I Sbjct: 326 SKMKISAETANKLAGITDGNYKEG-------------------------LTYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++S + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKSAVNAYQSIHGDLLDGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAINTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|126668564|ref|ZP_01739518.1| flagellar hook-associated protein [Marinobacter sp. ELB17] gi|126626969|gb|EAZ97612.1| flagellar hook-associated protein [Marinobacter sp. ELB17] Length = 668 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 123/371 (33%), Gaps = 16/371 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52 + + + + + NI NA+ Y R+D V V Sbjct: 1 MAGLLGIGLSGILGSQAALNTTANNITNANTPGYSRQDVQFGAQTPQRTGAGSIGTGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + SS G+QR L + + + + + + + ++ SL+ Sbjct: 61 ENIRRLANEYLTQQIREDSSLEGEQRTLNNELSRLDNLLGGE--STGLSKALNNFFASLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + VI ++VV F+ + + R +++ + ++ + Sbjct: 119 NAAEDPTSLPQRQLVISEGQQVVNRFSALNEKFIQQRESVKTQMQQGAKDANGLIASIAD 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N AI A +D LDQRD L+++SE++ I + V ++G L Sbjct: 179 LNSAISQSPGLAQGRMPNDLLDQRDERLRQLSELVSIKISPTEGAQVNVTLNNGQGLVIG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++ + N S + GK+ L + + ++L Sbjct: 239 NIAAELSTRPSASDP--LMLEFTLGTSGRVVNIDSQIEGGKLGGLRYFQQQALAPAFDEL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L S + + I + E G + + + P Sbjct: 297 GRIAIALADSMNSQHQIGMDLEGELGGLFFKDFNSSALQASRVVPNANNQTPGNTQLAVE 356 Query: 351 LRDGGSVSKKF 361 + D ++ Sbjct: 357 ITDSSMLAAGT 367 Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 97/367 (26%), Gaps = 8/367 (2%) Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ + + K + + + N T + I + Sbjct: 302 ALADSMNSQHQIGMDLEGELGGLFFKDFNSSALQASRVVPNANNQTPGNTQLAVEITDSS 361 Query: 182 ASKHDAHDFLDQRDVLLQKISEII------GISTIVRNNNDMVVYT-SDGTTLFETVPRD 234 D + ++E S DG L Sbjct: 362 MLAAGTWDLKLGAGDTYELVNERTGSVVNGNFSVTEDEIVMPGFTIRYDGGALNAGDRFQ 421 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 I + + + E S A+ Q V A Sbjct: 422 IQPTRNGAADIAMEVRREEDLAFASPVRAASREDNKGTGAISQGTMLAVRDPDTDALLPA 481 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G S + + GL + + + S+PS+ Sbjct: 482 FSLTGLVSSSTTVTFGEDASGGLTYTINSGGANIVTDASYVAGENLFSEVASDPSYQGFQ 541 Query: 355 GSVSKKF-LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 +V+ + + ++ ++ + ++ ++ N + + E + + Sbjct: 542 FNVTGQPKVGDIFDIEFNTNGVSDNRNAEFLASFGTKNRLNNGSQSFAEGYAGLVENVGV 601 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + S + GVNL +E LI+ + +YN S K+I + Sbjct: 602 QTRQSQLDLEAGKTLLEQSSNQRESVSGVNLDQEAGKLIQYQAAYNASAKVITVAQDLFN 661 Query: 474 TLLEGVK 480 TLL+ + Sbjct: 662 TLLQTFR 668 >gi|332298485|ref|YP_004440407.1| flagellar hook-associated protein FlgK [Treponema brennaborense DSM 12168] gi|332181588|gb|AEE17276.1| flagellar hook-associated protein FlgK [Treponema brennaborense DSM 12168] Length = 629 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 119/352 (33%), Gaps = 25/352 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S A + SQ ++ NI NA + Y R+ Sbjct: 3 SSFAGIEMGKRSLMAQSQSISTAGHNISNASTEGYSRQRVQLRQFDPIYRPDLSRAETAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + VT + + D + A S+ + + + E + ++ + S + Sbjct: 63 QIGQGVTAESISRVRDELLDSRITAQSNQESYWSTREKYYVMLEQIY-NEPNDVSIRSNM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S + S ++++ A + + + I + +IE + + Sbjct: 122 DMFWQSWQELSLYPESQAARQSIVTRAGSLTNSIQQRFNSLSGIGTLLNGDIEATVDQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + ++ +N I A + +D LD+RD+++ K+S ++ I+T R+ ++ +V+ Sbjct: 182 DYARQIAALNSEIVRSRAMGDNPNDLLDRRDLMVDKLSSLVNITTDQRDPDEFMVHIDGR 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + R + + N + V + +A+ G + AL+++RDS V Sbjct: 242 VLVQGNSARSFDVIPLTD-------NDGYSKVVWSDTGNDAAISGGSLGALIELRDSDVR 294 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 L+ M ++ A + GL + N Sbjct: 295 SELQNLNTMTMNFADLVNDVHRNAIGANGTTGLDFFTQQPFVTNTAGNYDRN 346 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/419 (11%), Positives = 107/419 (25%), Gaps = 4/419 (0%) Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 M DK+ + Q+ + + + + S D + Sbjct: 211 RDLMVDKLSSLVNITTDQRDPDEFMVHIDGRVLVQGNSARSFDVIPLTDNDGYSKVVWSD 270 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + + + + E+Q + +L R + Sbjct: 271 TGNDAAISGGSLGALIELRDSDVRSELQNLNTMTMNFADLVNDVHRNAIGANGTTGLDFF 330 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + D+ S I IS + + TL Sbjct: 331 TQQPFVTNTAGNYDRNGDGEADTSYIFRISGTNALDPQEQIGLRGSITLSGK---TGTVS 387 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 T T E+ I+ + + P F + E + + Sbjct: 388 VPYYPTDTVEAVVSRINDSDGEVKAYLDRNGNLVLKATTAQAQENPDFVIRHVEDSSHFL 447 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 ++ +G G + + + Sbjct: 448 AGYAGILQGSGPENAYDFARPDSVDVLNGAGTGGGAQYAVSPVLNPSAYIAVNPAITGDV 507 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + +GY + + + I + I TL +Y S+ + + Sbjct: 508 LSVASSFPGASGYGENGDG-RAASAIAAIRNSNVMIGRYRTLDDYFAESVTNVALKGEQA 566 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + GVN+ EEL+ +IK + YN + K I D++L T++ Sbjct: 567 EINMLSQNSILADLRTLRDSISGVNVDEELADIIKFQHGYNAAAKFITVMDELLDTVIN 625 >gi|296126646|ref|YP_003633898.1| flagellar hook-associated protein FlgK [Brachyspira murdochii DSM 12563] gi|296018462|gb|ADG71699.1| flagellar hook-associated protein FlgK [Brachyspira murdochii DSM 12563] Length = 637 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 66/429 (15%), Positives = 134/429 (31%), Gaps = 35/429 (8%) Query: 1 MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43 MS + F + N NI N K Y R+ + Sbjct: 1 MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEAPSLNRA 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + T D + G + + E + ++ N + Sbjct: 61 ERAGQIGQGAEITTVERIRDQFIDSKIMMELGTDGYWKTKSDYLKQLEAIY-NEPGNANL 119 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + DS + + N SE +++ A+ V + N ++ +R + + +E +I Sbjct: 120 RSDLDAFWDSWQEMAANPSERGTRMVLVERADRVNNSINQMFNQMNGMRNNLNNLVESKI 179 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + +N I + A +D LD+RD+L+ ++S + + + ++ +VY Sbjct: 180 NRINDISNSIKDLNVEIVKQQALGQSPNDLLDRRDLLIDELSSLANVDIKSMDPDETIVY 239 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + V +++ EK + +N D + G++KALL++RD Sbjct: 240 IGGRALIQGNVVSELSAEK-------NINNEGMYDIYWKKDHVQVQFEGGELKALLELRD 292 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK-------DLDNKLCQG 333 N +D A L S +E G+ K + D+ Sbjct: 293 VDTVDAINDIDTFAMNLADSVNEVHRSGFGLNQETGIDFFTMTKAAPSVIGNFDSNNDGQ 352 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 TI ++ GS N + + Sbjct: 353 EDSTIMFKVSGINSIDPTDSIGSSGTLIFGNKSREGADVAIDYTAQMKVGDLIDKINSSE 412 Query: 394 INTNVTLLE 402 N + L + Sbjct: 413 ANVSAYLDD 421 Score = 99.7 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 40/339 (11%), Positives = 92/339 (27%), Gaps = 12/339 (3%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D D ++ +N I F T +K + + I Sbjct: 300 NDIDTFAMNLADSVNEVHRSGFGLNQETGIDFFTMTKAAPSVIGNFDSNNDGQEDSTIMF 359 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 N+ D TL + YT + + +N + + Sbjct: 360 KVSGINSIDPTDSIGSSGTLIFGNKSREGADVAIDYTAQMKVGDLIDKINSSEANVSAYL 419 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 L + + + +++ D Sbjct: 420 DDNNKLVLKA---RAFDDYMRPSYFIKHIEDSGDFLVGITGVLNQSGANGAYNWQATDQV 476 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 N+L ++ ++ + D ++ K + + N + Sbjct: 477 NQLAGDFRNFTTTPYRHPASAIAVNDIIRNDVNYIAASKGIDTTGNGFNDKWNGLGDGAN 536 Query: 388 FDPVAGINTN-------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +A + T ++ SI + ++ K VV ++ + Sbjct: 537 ALAIANLKNKEIMVESKSTFNDFYTGSIARIASRTETANAETEKQTVVMEYLERLRQSVS 596 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVNL EE++ + + YN S +++ D++L ++ + Sbjct: 597 GVNLDEEVAQMAMYQHGYNASARVVSIMDQLLDVVINRM 635 >gi|85859175|ref|YP_461377.1| flagellar hook protein [Syntrophus aciditrophicus SB] gi|85722266|gb|ABC77209.1| flagellar hook protein [Syntrophus aciditrophicus SB] Length = 518 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 54/516 (10%), Positives = 126/516 (24%), Gaps = 47/516 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPEN----VT 51 + N + +Q I N+ N+ Y DT S Sbjct: 12 MSNALWIGTTGLNASQRQMDIIGNNLANSSTLGYKSADTQFANMLSQSLTSGSGSFQVGQ 71 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V S N + S + F +K+ A Sbjct: 72 GVAISSVNTKFDQGSFESTGSVTDMAIDGEGFFPVKDKEGAI------YYTRAGAFVIDK 125 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFN------------TSAREVQKIRADADKEIELE 159 + Y +++ + + +A + + T + D++ Sbjct: 126 DGYLVDVNGYRVQGINLFSAPGDAELTDICLKNIQSAPSATKTFGIGVNLNDSEDAGTSF 185 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + F S+ + N ++ F + D + S GI N Sbjct: 186 VVSQNVFDSKGAIHNLSLTFTKTEGDGYWGCQAKLDNVETINSSCCGIKFDESGNLKNTY 245 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA----- 274 TS + + G + S+ ++ Sbjct: 246 LTSCSAGAVSGGGAITSTTVNKPGQLYLNGTIACTRGADADTWTISSSEYPNLEFSLGDL 305 Query: 275 ---------LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L + + + + S+ + A + Sbjct: 306 GNDDEIAIDLDGKGGTDITLALGAGFADLSSFDLTISQVESNAADVTFEFPGLANGADIG 365 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 N L + + + S ++ + ++ + + + Sbjct: 366 SGNALTWNLIGDDALQVTGYAATSVIKALEVDGYTSGVLKSLSVEKDGIISGIFTNGQTS 425 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + +A L + E N S + ++ I + ++ Sbjct: 426 DLGQVVLANFPNVGALRKIGSYFA---ETNFSGAAIINSPGTGGLGEIMSNSLEQSNTDV 482 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E +I +++Y S ++I +D+ML L+ + Sbjct: 483 SMEFVNMINAQRAYQASARIITTSDEMLTELMNIKR 518 >gi|146307863|ref|YP_001188328.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] gi|145576064|gb|ABP85596.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] Length = 681 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 50/379 (13%), Positives = 127/379 (33%), Gaps = 14/379 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + N + + + A NI N + + R++ + T T+ Sbjct: 1 MADLLNIGLSGLSASKTSLAVTGHNIVNVNTPGFSRQEAVQTTRTPQFSGAGYIGSGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + + + ++ + ++ S T + +L +L+ Sbjct: 61 VDVRRIYNEFLNTQVRSSTALNS--DTQAYLSQINQLDSLLAGSTTGVTPGLQRLFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +++ + + + AE + + FNT + + A +K++ + + + + Sbjct: 119 TAAEDPANIPARQLALSEAEGLSKRFNTIYDRLYEQNAFLNKQLSAVTDQINQLATSIAG 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D LD R+ ++K+SE IG++ + +++N ++ G L Sbjct: 179 FNDAIAVAASNGQAPNDLLDAREEAVRKLSEFIGVTVVPQDDNSYNLFIGSGQPLVVGSK 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + I S + G++ LL+ R V+ N + Sbjct: 239 AARLEVTPGQSDPLR--SEIQFVSGSSRQGITSLITGGEMGGLLRYRQDVLDQSMNAVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + + + G + I D + ++ + + Sbjct: 297 LALSIADQMNRQLGQGLDLNGQFGNELFRSINDPLLLSQRSLARVGNSDTTANLAVTLTD 356 Query: 353 DGGSVSKKFLWNVKNLAGY 371 + + + Y Sbjct: 357 TSRLTTSDYEVQFTSATEY 375 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/440 (9%), Positives = 113/440 (25%), Gaps = 22/440 (5%) Query: 38 RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 T + +++ D+ ++A + Q L + + + + Sbjct: 262 SSRQGITSLITGGEMGGLLRYRQDVLDQSMNAV-GRLALSIADQMNRQLGQGLDLNGQFG 320 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 N I+ + + T + A + + + + A + + Sbjct: 321 NELFRSINDPLLLSQRSLARVGNS---DTTANLAVTLTDTSRLTTSDYEVQFTSATEYVV 377 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 +S+ L T I A + D ++ + + Sbjct: 378 RRVSD--GTLFPPTPATFDITTVPAPEVDGFSLGVSSGTFAAGDRFLVMPTRNAGRDIRA 435 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + + + + + + + +T I+ ++ L Sbjct: 436 DMKNPEELAFAAPLKAETSPANIGTGRITQPRLLTEINIYDPAAQADLETSLRNAPPLRI 495 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + Q+ ++ + + Sbjct: 496 VMGAGGGATQS------YDVVDINGNVIDTGSIVPGQDNALTITVPANPPAIPAAFDYQV 549 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + N ++ + +N +P A T Sbjct: 550 TISGRPQAGDNFSVSF----------NTNGVSDNRNALNLVNLQNKSVIGVNPGAPTTTG 599 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 + + + + + S + + + +++ + GVNL EE + LI+ EQ Sbjct: 600 SSFSDAYGDLVERVGTLTSQARVDGQATSAILKQATDNRDSISGVNLDEEAAKLIQFEQY 659 Query: 458 YNISNKLIMFTDKMLQTLLE 477 Y S ++I + TL+ Sbjct: 660 YQASAQIIQVARNLFDTLIN 679 >gi|229138438|ref|ZP_04267027.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST26] gi|228644975|gb|EEL01218.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST26] Length = 420 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 60/479 (12%), Positives = 144/479 (30%), Gaps = 71/479 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61 A + +N+ N YVR+ V + Sbjct: 1 MLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDE 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + K + S + S + E M N S + + ++ +KN + Sbjct: 61 VKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQS 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 T+I + N A+ + + A ++IE ++ R L N I Sbjct: 120 NYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQ 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + LD+RD ++ ++S+ I + N + L Sbjct: 178 AGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + N V + G IK+ + + + ++ L+E+ + Sbjct: 228 QDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMSSVKNQV 286 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + ++ + +NP++ ++ S ++ + K Sbjct: 287 NTVM--------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKL 326 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + ++ + I + ++S+ + Sbjct: 327 AGITDEVYKDG-------------------------LSYKKALDQFIVKVASDKSEVNGY 361 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 362 QKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420 >gi|217976241|ref|YP_002360388.1| flagellar hook-associated protein FlgK [Methylocella silvestris BL2] gi|217501617|gb|ACK49026.1| flagellar hook-associated protein FlgK [Methylocella silvestris BL2] Length = 496 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 135/496 (27%), Positives = 219/496 (44%), Gaps = 17/496 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKNYVRRDTMTTISPENVTVVTQRSEN 59 MSL AQ+ + + + A++ RNI A+ Y R+ + V + + Sbjct: 1 MSLANAAAIAQSGLASVTTEIATLSRNISGANDTSVYSRKIANVVSTASGSQVTSISRAS 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD---------DHYNNSPTHYISKLRDS 110 + + +SAI + + + D SP IS+L D+ Sbjct: 61 SQAVFENVLNATSAIAAEDAVSTGLEALATTVGDVASAAGADATSTATSPAALISRLSDA 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ YS + S+ V+ A + + N + +Q+ RA AD +I +S++ L++ Sbjct: 121 LQYYSGSPSDMTAAANVVSAANALARGLNQGSAAIQQARATADSDIAAAVSDINSQLAQF 180 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-E 229 VN+ I TA D+ D DQRD +L++IS IGIST+ N DM +YT G TLF Sbjct: 181 QEVNEKIIAATAVGKDSTDLQDQRDTILKQISANIGISTVTAGNGDMSLYTDSGVTLFQG 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQN 288 R ++F +Y + +++DGV ++ A+ GKI L IRD+V +Q Sbjct: 241 GRARTVSFTPTTTYVTATVGQAVYVDGVAITGATATMAIASGKIAGLATIRDAVAVTYQA 300 Query: 289 QLDEMARVLIGSFSEKDPI--AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 QLD +A LI +F E D + + A I L I V+P Sbjct: 301 QLDGVASALITAFRESDQAAVGPDLPGLFTTASATAIPSSAAGLASAIIVNAAVDPSQGG 360 Query: 347 NPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + LRDGG + +N A + I+ D+ + F + T+ ++ Y Sbjct: 361 DLTLLRDGGIADPSGTDYTYNTSGAASFAGRISELIDNLSATQSFSSSGSLTTSASVGGY 420 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 A S+ WLE RS + + + S + SN GVN+ +E+S ++ +EQSY S K Sbjct: 421 AAASVSWLEAQRSAASSRSSYQGALLSTASTALSNATGVNINDEMSKMLDLEQSYAASAK 480 Query: 464 LIMFTDKMLQTLLEGV 479 L+ + M LL G+ Sbjct: 481 LLSSINDMFNALLSGI 496 >gi|33601541|ref|NP_889101.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] gi|33575977|emb|CAE33056.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] Length = 473 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 53/480 (11%), Positives = 112/480 (23%), Gaps = 16/480 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F +A + N ASQ I NI N+ + + V + N+ Sbjct: 2 GFGQALSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + D + Y N Sbjct: 62 TVGNISMTNGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYVVNAQGFR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179 L + + A + + + + Sbjct: 117 LTGYPAGAVGAQPVDLQLPPGNIAPRPASTAGLQGNLNANAKLINPNDTPAVDGTVELDG 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + S +A + G I + + G ++ + I F+ Sbjct: 177 TSYSFTNAGGVFAWVAPGPVDGTYNGGDIVIAGGAVTGDLASQPGYQPYQPLVAGIPFDP 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N + T + D + S K + + + Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMVQYFAKRPAVGTESVYEVYYV--LDGQPMQVNGGAS 294 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVS 358 D P + + ++ T+ N + + + Sbjct: 295 QTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGY 354 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++ L+ Y + + +A N L N W E + S Sbjct: 355 SSGEYMGLSVGEDGSLVAKYTNGETQTIGTVVLANFNNVQGLKPVGNN--AWAETSESGQ 412 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L I V+L EL +I +++Y + + I ++++Q L+ Sbjct: 413 ATLGQPGTNGLATIVGQALEGSNVDLSSELVNMIVAQRTYQANAQTIQTQNEVMQVLMNM 472 >gi|220929459|ref|YP_002506368.1| hypothetical protein Ccel_2042 [Clostridium cellulolyticum H10] gi|219999787|gb|ACL76388.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 454 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 51/479 (10%), Positives = 126/479 (26%), Gaps = 26/479 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + I N+ N + + + + Sbjct: 1 MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTF----------------QEI 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F++ L + + + A +N T + D+ S + Sbjct: 45 FNQTLRGAGAPDAATARGGTNPMQIGLGIAVGSIDNQMTGGSPQRTDNPTDLSISGDGFF 104 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + K I + + + N ++ + + + N+ + T+ + +KF T Sbjct: 105 IVKGSIADTFKFTRAGNFGLDKLGNL-------VSGDGMNVYGWTKYDTLGDGTVKFDTE 157 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ + +KI S + N + F +S Sbjct: 158 AEITPINLYSDVTNGNKKIIAAKATSYAEFSGNLNSALPILADPDDSDPQFTVPFTIYDS 217 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 E F ++ + + S Sbjct: 218 LGNAHELMVNFKKTDDLTDIPVKLPDGTDGTEPGTEWTYTISDKAGNSVLTDAGKVNFNS 277 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + G+++ + I+ QY + S Sbjct: 278 KGKLVLGDNDAPEQRIMEFDPGQNSGTGKINITLDFKKLTQYAGDNSVKPSNIDGYTTGN 337 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ L Y + + +AG + L + N ++ S Sbjct: 338 LVTFNIGSDGMLTGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNL--FIPTTNSGDFTKG 395 Query: 423 M-KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +S V+L E + +I ++ + ++++I +D+MLQ L+ + Sbjct: 396 VPAGSQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 454 >gi|261339382|ref|ZP_05967240.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus ATCC 35316] gi|288318183|gb|EFC57121.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus ATCC 35316] Length = 547 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 67/548 (12%), Positives = 160/548 (29%), Gaps = 74/548 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI + + Y R+ T+ S V V Sbjct: 1 MSSLINSAMSGLSAAQAALNTVSNNISSYNVAGYTRQTTILGASNSTLTGGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L A + + + + +D NS + + SL+ Sbjct: 61 SGVQREYDSFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSISTTLQDFFKSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +TV+ A+ +V F + + ++ + + I + + + ++ Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKVNDQYLRDQDSQVNTAISTSVDQINNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + +G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNKIVGVEVSVQDGGTYNISFGNGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + D + G + LL R + +N L Sbjct: 239 SKTNQLAAVASSADPTRTTVAYVDDVAGNVEIPEKLLNTGSLGGLLTFRSEDLDNARNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++A + + + ++ G + + + + Sbjct: 299 NQLALAFADAMNTQHEAGFDANGAAGGALFNMGSPAVVGNSHNSVPGATMTASVTDSSKV 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA------ 404 D+ K ++ + Sbjct: 359 QATDYKFEFNGTDWTVTRLSDKTSFTATPDASGKMTFDGLTVNVSGTAATKDSFTVKPVV 418 Query: 405 --------------------------------------RNSIGWLEKNRSDSHDLHMKSQ 426 +NS + + S Sbjct: 419 NTIVNMSLAISDESKLAMASAADGGESDNRNGKALVDLQNSKVVGGNKTFNDAYAALVST 478 Query: 427 VVFNHISESYSNTVGVNLQEELSF----------------LIKVEQSYNISNKLIMFTDK 470 V S S+ N+ +LS L + +Q Y + +++ + Sbjct: 479 VGSTTASLKTSSQTKANVATQLSNQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANT 538 Query: 471 MLQTLLEG 478 + L+ Sbjct: 539 LFDALINI 546 >gi|216263829|ref|ZP_03435823.1| flagellar hook-associated protein FlgK [Borrelia afzelii ACA-1] gi|215979873|gb|EEC20695.1| flagellar hook-associated protein FlgK [Borrelia afzelii ACA-1] Length = 627 Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 55/457 (12%), Positives = 139/457 (30%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFTSMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + N + + S+G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQNPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + V GK+ ALL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKVQLKT------GKLGALLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSD 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSG 447 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 111/372 (29%), Gaps = 14/372 (3%) Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + I A T ++ + D+EI+ EI+ L + + + + I Sbjct: 258 TNGPTRTRWNILWANNDKVQLKT--GKLGALLNIRDEEIKNEINELNNLAANIIELVNEI 315 Query: 178 KFKTASKH---------DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 D R + I + N+ ++ L Sbjct: 316 HETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLG 373 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 N + P + V+ N A +I + ++ V +N Sbjct: 374 FYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSDAQVTARINSEGKLEIKAVKEQEN 433 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + I N G A K++D T ++P Sbjct: 434 ENITFRIKHIEDSGLFLTKYTGILNESGPEGAYDYKNIDTTDKLTPKSTYSISPLKNPAA 493 Query: 349 S-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + D + + I + + + I N+TL +Y N+ Sbjct: 494 WIKVADTIDSDPSKIASGIKNLTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANT 553 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + S + +++ + GVN EEL+ +I+ +Q++ ++K I Sbjct: 554 ASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITV 613 Query: 468 TDKMLQTLLEGV 479 + +++ T++ + Sbjct: 614 SAELIDTVINKM 625 >gi|111115003|ref|YP_709621.1| flagellar hook-associated protein FlgK [Borrelia afzelii PKo] gi|110890277|gb|ABH01445.1| flagellar hook-associated protein [Borrelia afzelii PKo] Length = 627 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 55/457 (12%), Positives = 139/457 (30%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFTSMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + N + + S+G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQNPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + V GK+ ALL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKVHLKT------GKLGALLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSD 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSG 447 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 12/347 (3%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH---------DAHDFLDQ 193 ++ + D+EI+ EI+ L + + + + I D Sbjct: 281 GKLGALLNIRDEEIKNEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDD 340 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 R + I + N+ ++ L N + P Sbjct: 341 RGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLGFYGTLKFETTNSNEIVEIPYNAPDT 398 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + V+ N A +I + ++ V +N+ I N Sbjct: 399 VQDVINRINNSDAQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372 G A K++D T ++P + D + + Sbjct: 459 ESGPEGAYDYKNIDTTDKLTPKSTYSISPLKNPAAWIKVADTIDSDPSKIASGIKNLTNE 518 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 I + + + I N+TL +Y N+ + S + + Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + GVN EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625 >gi|33596140|ref|NP_883783.1| flagellar hook protein FlgE [Bordetella parapertussis 12822] gi|33573143|emb|CAE36790.1| flagellar hook protein FlgE [Bordetella parapertussis] Length = 473 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 51/480 (10%), Positives = 110/480 (22%), Gaps = 16/480 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + N ASQ I NI N+ + + V + N+ Sbjct: 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + D + Y N Sbjct: 62 TVGNISTTGGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179 L + + + + + + Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPADDGAVELDG 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T +A + G I + + G ++ + I F+ Sbjct: 177 TTYRFTNASGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVAGIPFDP 236 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N + T + D + S K + + + Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV--LDGQPMQVNGGAS 294 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVS 358 D P + + ++ T+ N + + + Sbjct: 295 QTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGY 354 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++ L+ Y + + +A N L N W+E + S Sbjct: 355 SSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNN--AWVETSESGQ 412 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L I+ V++ EL +I +++Y + + I D+++Q L+ Sbjct: 413 ATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472 >gi|94263281|ref|ZP_01287097.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456364|gb|EAT06488.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 879 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/419 (11%), Positives = 126/419 (30%), Gaps = 12/419 (2%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49 MS + V N A+ N+ N D Y R+ Sbjct: 1 MSGITHVLNLAKQALLTHQSSIQVAGHNVANVDTPGYTRQKINIEANTAFPSAAGIMGGG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + SS +G Q + E + ++ + +++ + Sbjct: 61 VLADGIARQYDQFMVERIAKQSSLMGNLEAQQQALRVVEPIF-NEARGLALNDLMNQFWN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + S N + V+ + + + + T + E+ + R+D ++ I+++ + Sbjct: 120 SWQELSDNPETLGARQNVLQHGQLLADHMGTMSSEIIRARSDIGTNLKSAINDINSISDQ 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I + +A+D D+RD L++++S ++ ++ V +DG L E Sbjct: 180 IAQLNSKISTAEVGRSEANDLRDRRDNLVKELSTLVDVNHFADKRGAYSVMLTDGHPLVE 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + ++S+Q G ++ ++ + + Sbjct: 240 GDESWQVDWVDDQLHWIGTDATGRTNSRALNSDQLGGKIGGWLEIHGELAAGDPNNYAGR 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A LI ++ + + + L + ++ + Sbjct: 300 LDALANALIRELNQLHSSGVGTVRFDDELVGSELGALTSVTTGQVAANTANRNIPAGSIK 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + +N + N Sbjct: 360 VNGLDIGQIRGAAPVNGRATEKAANAVNAINQADAGVTARLTTQVNGEGIAEDDLNNIN 418 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 125/389 (32%), Gaps = 25/389 (6%) Query: 92 ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 A D + + + + + S + + G+T + + + + + I A Sbjct: 516 AGDESSITIANLDGDFAAADLTTSILGLDAVAGETKVADTKHNTGEITLFSDQSYTIEAG 575 Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 D D + D D G Sbjct: 576 VDD---------NILAQLGLHDVDQRGDQRGDGQLRVVPGDGPDDAFLLNGFKHGEQLDT 626 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + + + D +L P +++ E+ + + + I + + G+ P Sbjct: 627 EDGSFSIWLYHDDGSLALPQPVEVSLERAYTARDAAAAINNAIIEAGGTDDPGAEHPIPW 686 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 ++A ++ + N + A + + F + L+ Sbjct: 687 LQAKFDPKEQRFTLTPNDGYQFALDGARQE--------DGTHGRDTFNFLQVAGLNTFFT 738 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + TI +N + ++L + + + + AG + +K + Sbjct: 739 GHSAGTIGINQTVADDLNYLA-----AGQVRDDGQVYAGDNTNALEISNLQHK---DNIK 790 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 +L + + IG + +++V N ++E GV+L EE++ L Sbjct: 791 FEGGRTNSLNGFYNSLIGDIGNKGRTIGRNLEFNELVLNQMNEMRDAVSGVSLDEEMANL 850 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IK + +Y + ++I +D+ML TLL+ V+ Sbjct: 851 IKFQHAYTAAARMISMSDEMLVTLLDTVR 879 >gi|219684499|ref|ZP_03539442.1| flagellar hook-associated protein FlgK [Borrelia garinii PBr] gi|219671861|gb|EED28915.1| flagellar hook-associated protein FlgK [Borrelia garinii PBr] Length = 627 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 142/457 (31%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ + Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVIMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFVSMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + + + + S+G Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + + ++ + V+ GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWSILWANNDKVNLET------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHVFKINSTNEIFPEEKLGFYGTLKFEATNSNEIIEIPYNAPDTVQDLINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSG 447 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 46/347 (13%), Positives = 107/347 (30%), Gaps = 12/347 (3%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---------FLDQ 193 ++ + D+EI+ EI+ L + + + I + D Sbjct: 281 GKLGSLLNIRDEEIKNEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDD 340 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 R + + + N+ ++ L N + P Sbjct: 341 RGRYDTNGNGQFDSVHVFKINSTNEIFPE--EKLGFYGTLKFEATNSNEIIEIPYNAPDT 398 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + ++ N +A +I + + V +N+ I N Sbjct: 399 VQDLINRINNSNAQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372 G A +++D T ++P + D + + N Sbjct: 459 ESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAAWIKVADTIDLDPSKIAAGINSPTNE 518 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 I + + + I N+TL +Y N+ + S + + Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + GVN EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625 >gi|47566121|ref|ZP_00237159.1| flagellar hook-associated protein 1, putative [Bacillus cereus G9241] gi|47557038|gb|EAL15368.1| flagellar hook-associated protein 1, putative [Bacillus cereus G9241] Length = 432 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 61/492 (12%), Positives = 145/492 (29%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + + + S + S + E M NS + + Sbjct: 60 GVQTLGVDRITDEVKTRQFNDQMSQFSYYAYMNSTLSRVESMVGTT-SKNSLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A++ ++I +IE + R + Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTNQVNRLAKQFEEIEMQTTADIEAHVDEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYAEIEVSYESANPNIASVRMNGVLT 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S + + Q + K KI + V + Sbjct: 237 VNGQDTYPLQLQKNKEPMSLQIYGTDIPLNGGAIQSAIDTKAKITGYKDNLNEFVNSLKK 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q++ + + ++ + +NP + + Sbjct: 297 QVNTVMNK-------------------------------DFFVGEDAKKLEINPDFTKDI 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + + + D + G+ ++ + + +N Sbjct: 326 SKMKISAETANRLAGITEEDFKPGLTYKQALDQL--------LVGVASDKSSVNAYQNI- 376 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 377 ----------------HKDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|152989404|ref|YP_001349644.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7] gi|150964562|gb|ABR86587.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7] Length = 682 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 58/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+ + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQSAIQQTQVPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + +S + + +D + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSDTT--TGVSPAMQRFFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S + V+ A+ + + FNT ++ K + ++++ S + + Sbjct: 119 TAANNPSSTEAREAVLAQAQGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D +D RD ++K+SE+IG++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + N V G++ LL R+S + N+L + Sbjct: 239 VSTLSVVPGLDDPSRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L + + + + G + I D D + + N ++ Sbjct: 297 LAITLADTINRQLGQGLDLAGKAGSNLFGDINDPDITALRVL--------AKNGNTGDVK 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGSGPYTLS 397 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 44/444 (9%), Positives = 91/444 (20%), Gaps = 13/444 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 R + V S + + +L Q L + ++ Sbjct: 252 SRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINRQLGQ 311 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 +L + L A+ + + + Sbjct: 312 GLDLAGKAG---SNLFGDINDPDITALRVL----AKNGNTGDVKANLNITDTSKLNSSDF 364 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L+ L + S F D V + + Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGSGPYTLSFKDANGVDQGFSVTLDKLPAAGDRFTL 424 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + ++ N + + + Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARAESNTDNRGTGKIGAPTLTGAPSPVDPAVLQNA 484 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + D L + + N + ++ Sbjct: 485 FGPNGISLAATLSADGKTYTLSSPLPAGWSY-VDKDGNALSGSPTLTSGNSNTVRMAFTD 543 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 Y S + K + L D NT Sbjct: 544 PSGQKYSYEFELSGVPQNADSFKVGFNDKGISDNRNAL-----DLLALQTKPTVGGTDNT 598 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T E + + + S V +S + GV+L EE + LI+ +Q Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 Y+ S ++I + TL+ + Sbjct: 659 YYSASAQVIQVARTLFDTLIGAFR 682 >gi|319944129|ref|ZP_08018407.1| flagellar hook-associated protein [Lautropia mirabilis ATCC 51599] gi|319742623|gb|EFV95032.1| flagellar hook-associated protein [Lautropia mirabilis ATCC 51599] Length = 628 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 129/378 (34%), Gaps = 13/378 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + Q+ A Q + NI N YVR++ + V V Sbjct: 1 MAGLIQIGQSALAAAYTQLQTGGHNIANVHTPGYVRQEVQLATAGGQYHGHGYIGNGVEV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + +S G + + + AD + + R +L Sbjct: 61 QDVRRAYDRFMADEVTRSTSLAGTDAVRAQQLGQVDNLLADT--ETGIGVAMDEFRAALG 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 ++ + A V F+ ++++++ + +A + +E + L ++ Sbjct: 119 DLVNQPADGSARAVIAARANTVANRFSETSQKLEAMVGEAGRRLEDSAQYVNARLEQVAS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A+ H +D LDQRD L+ +++ I ++ + + + +Y+++G +L + Sbjct: 179 LNRQITQSYANGHQPNDMLDQRDSLINELASKIQLTRDDQPDGSVNLYSANGHSLVLSER 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + I G V S + G+I LL+ RD + Q L Sbjct: 239 AAQLKTVPGDADSARTRLMLDIHGKQVEM-SESTLGSGEIAGLLRFRDQDLLAVQASLGR 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA G+++ + ++ G + + K + ++ Sbjct: 298 MAAAFAGAYNAQQARGLDANGKRGQAMFEVGKPVVQAADHNTGGAKLEVSVLDTSKLKAA 357 Query: 353 DGGSVSKKFLWNVKNLAG 370 D ++ ++++ Sbjct: 358 DYRLSYDGSVYQLEDVVS 375 Score = 87.0 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 37/101 (36%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 ++ + T + + + + + S + +N Sbjct: 528 NANAREMTLLADRHNVDGATFSQAFASLLSDVGSRALQAKTSEKASAKMLEGAKTVLANR 587 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVNL EE + L++ Q+Y + K+I D+M ++L + Sbjct: 588 SGVNLDEEAARLLQYRQAYQAAAKVIQTADEMFNSILALAR 628 >gi|315497625|ref|YP_004086429.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415637|gb|ADU12278.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 472 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 62/491 (12%), Positives = 139/491 (28%), Gaps = 30/491 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 MSL A S ++I NI N+ Y R T + +P Sbjct: 1 MSLSASMQAGVAGLAANSNALSAISNNIANSTTTAYKRVRTDFQSIVTASSTPTGYNAGG 60 Query: 55 QRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 S ++M L SS + Q F + S + + Sbjct: 61 VISTTRHMISTLGTLQKASSQLDLGIDGQGFFITTQK-SEPGAEDARLFTRDGSFFADED 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y +N S L I + ++ + +IE V Sbjct: 120 GYLRNASNLYLQGWPITAGGGPTLSAADLSQLRTINVENIAAQIEPTT-------FAEIV 172 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N + + D + + + +T R + ++ + SD + Sbjct: 173 GNLNANQTISDRADEYAASPTTLPMATYDASAPDTTTSTRPDYEITIPVSDSQGGERRLT 232 Query: 233 RD---INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + + + + + V + S + ++ + Sbjct: 233 VSMIKLAADPTATPPIAANTWAYEVWSPDVKDSTISPATEASTNGIVS---------RGH 283 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + + + + ++ F + + + Q ++ S Sbjct: 284 LVYNSAGKLTDIVDSTGTSTGATSLNLSFNWNSAIGVAAQTVQVEFNGDQGGLTQLNSAS 343 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 R + + ++ + + + ++ +A L + N Sbjct: 344 TNRVDADGTPFSGLDKVQISKEGLVTAVFKNGSTRDIAQLALATFVNADGLTPVSGN--A 401 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + N S L + + V+L EE + LI +++Y+ +++ I D Sbjct: 402 YTVSNDSGPLTLKVPGVSGAGLLGVGTLEASDVDLSEEFTNLIVTQRAYSANSRTITTAD 461 Query: 470 KMLQTLLEGVK 480 +MLQ LL + Sbjct: 462 EMLQELLNIKR 472 >gi|83312926|ref|YP_423190.1| flagellar hook-associated protein [Magnetospirillum magneticum AMB-1] gi|82947767|dbj|BAE52631.1| Flagellar hook-associated protein [Magnetospirillum magneticum AMB-1] Length = 858 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 147/437 (33%), Gaps = 12/437 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL N A + + I +N+ N + K YVR+ V Sbjct: 1 MSLTLGLNSALSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGAL 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S G + Q++ E M +NS +H I L+ S E+ + Sbjct: 61 TRNVDEGLMRDIRRQTSTQGALDVTQTYYPRLEDMFGTVGSSNSISHQIETLQASFETLA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + + A ++ FN +Q +R +AD+ + + + L ++ +N Sbjct: 121 TQVNTPAFQSSTVQTANDMTDQFNEMTTHMQNLRLEADRALHDTTGQVNKQLEDIFDLNQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I A D D D+RD L +S+ + I R + + V+T G TL + P + Sbjct: 181 KIVRNNAIGGDIGDLQDKRDNALTTLSKYMDIQYFERGDGSVGVFTKSGKTLVDKGPAVL 240 Query: 236 NFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + S + S + G + G+++ALL +RD++VP Q Q+D Sbjct: 241 SHVATTITDSWMTSAGGNFNKLTLSTTDSPDVGEDINDGEVRALLDLRDTIVPNLQAQID 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E+A L + ++ + N ++ + + Sbjct: 301 EVASKLKDAVNQVHNRGTIFPTQSSKMVGTRQLADPNNPALNG-SNPQNIWFSGNDDTTI 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + I D +T + A W+ Sbjct: 360 ALFDTNGNQLAATTVRTIMSSTSYTDAAGAATALDISDAATTPGVKMT--DVAAKIQSWM 417 Query: 412 EKNRSDSHDLHMKSQVV 428 + + + S V Sbjct: 418 RQQSYQGNIMSAASASV 434 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 51/442 (11%), Positives = 128/442 (28%), Gaps = 12/442 (2%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + V+ + + + A ++ +F+ + + S Sbjct: 428 SAASASVSTGTLVLDTGVPSVTLAFRDQKATAAGSAAADARINFDVDGDNKADKQVAGFS 487 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ + S S+ + + A + T I A + Sbjct: 488 NFFGLNDFFTASVPNSIVDSDVVSKDFTLGAARSFTLSDPTGKIG-NTINMSAGSSLYDI 546 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + T + D + Q ++ + Sbjct: 547 AKKINAQTQTNESATLSSSSLTTTSTTNITINDANGRVTQLSLASGNMTLKDIADAINAQ 606 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 +S + P +S V + + ++G + ++ + + L++ Sbjct: 607 GSSAQAAAVQEGPNAYRLRVWDSRGVPLD---VTVNGGTIGTSDMKSYLGLQPSQLVEA- 662 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + + + + + + TI Sbjct: 663 -----SVIPEGAGYRLRIRQTSDRELFLGATPDTLTPSGSFITELKMHTASSRKA-GTIA 716 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNV 398 V + +P+ + G L G + + + + Sbjct: 717 VRTDIQGSPAKVSRGSMQYNTDLGKYFLSEGDNTTALALGAAMSSKTDMATAGSLYAGSY 776 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 T E+A SI + + + + D + ++ +++T GVNL EE++ +I +Q+Y Sbjct: 777 TFAEHAAASIAQVSTDAAHAKDRQDYQTTLGQALNSQFASTSGVNLDEEVANMINFQQAY 836 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 + S K+I +ML TL+ VK Sbjct: 837 SASAKVISTLQEMLDTLVNIVK 858 >gi|225552251|ref|ZP_03773191.1| flagellar hook-associated protein FlgK [Borrelia sp. SV1] gi|225371249|gb|EEH00679.1| flagellar hook-associated protein FlgK [Borrelia sp. SV1] Length = 627 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEMHEAGHGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIIEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENIAFRIKHMEDSG 447 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 41/380 (10%), Positives = 104/380 (27%), Gaps = 9/380 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ A IE+ Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINELNNIAANIIEIV 312 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + D D I I++ + + Sbjct: 313 NEMHEAGHGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEKL 372 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T +I N+ + + + + ++ K +IKA+ + Sbjct: 373 GFYGTLKFEATNSNEIIEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQE 432 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + +++ L + + + + Sbjct: 433 NENIAFRIKHMEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTEKLAPKSTYSISPLK 489 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + S + N N D + + + I N+T Sbjct: 490 NPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNLT 545 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 546 LNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFI 605 Query: 460 ISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 606 AASKFITVSVELIDTVINKM 625 >gi|168334552|ref|ZP_02692708.1| hypothetical protein Epulo_06138 [Epulopiscium sp. 'N.t. morphotype B'] Length = 473 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 43/493 (8%), Positives = 112/493 (22%), Gaps = 35/493 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + I NI N + + + + Sbjct: 1 MMRSLFSGVSGLQSHQLKMDVIGNNIANVNTIGFKSQRVTFADVYYQTTQSATTANEMTG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 Q ++ + + + + M + Sbjct: 61 LGGMNAMQIGLGTSVSSIDMLMTPGSAQRTDNPFDLMIEDDAMFIVSDATGTYYTRSGAF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 R + + + + ++ ++ N+ L Sbjct: 121 RVDERGTLVIPNGMRVQGWPANEIGTEIMRGTVGDLKLNTPENNSADPQTTTDVNITGNL 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + +N + + D L + S I + + + G Sbjct: 181 NVDDSINADGTTASPIYSAIKFY----DTLGTQYSMPITFTATTLDAAQGQTVWTIGIPA 236 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 F + + + + + + ++ Sbjct: 237 DTLTTPPNPFTTITDTDGNQYLITPPVPTPNPAVIKFDVDGEIVLDGTEEM--------- 287 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 Q + DP + G ++ + N Sbjct: 288 -QFTAINLRNAYVRDPDDPSIATLAPIIADVGTQGTGGGTIEVNLSLLTQYDSITNLDPN 346 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L G+ ++ + +Y + K V + L + A N Sbjct: 347 MGTLDFNGAGKAAGEMQGFDVGTDGKITAYYSNGDIKLLGQVAVTYFDNLAGLEKVADN- 405 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 +S ++ + V+L +E + +I ++ Y S+K I Sbjct: 406 -----VFKSTANSGDFDGVGAAGSFATGTLEMSNVDLSKEFTEMITTQRGYQASSKTITT 460 Query: 468 TDKMLQTLLEGVK 480 +D+MLQ L+ + Sbjct: 461 SDEMLQELINLKR 473 >gi|229017025|ref|ZP_04173945.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1273] gi|229023207|ref|ZP_04179718.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1272] gi|228738132|gb|EEL88617.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1272] gi|228744296|gb|EEL94378.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1273] Length = 432 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 57/492 (11%), Positives = 142/492 (28%), Gaps = 72/492 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNLGSVGASNGHTPGQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQFSYYAFMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+ + N A+ + ++IE ++ R + Sbjct: 119 NAFREVAKNPEQSNYYSTLAAETGKFTSQVNRLAKNLDTAEIQTTEDIEAHVNEFNRLGA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + D+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANKKI--GQAGTQVPNQLFDERDRIITEMSKYANIEVSYESMNLNIASIRIDGVL- 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T + N V + G I++ + + + ++ Sbjct: 236 ---------TVNGQDTYPLQLNKGNEPMTVAIYGSDIPLTGGAIQSAIDTKAK-IASYKK 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 ++++ + + + I +NP++ + Sbjct: 286 NIEDLMSSVKNQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S ++ + K ++ + I Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + +++ + + + I + + GVN++EE+ L+ ++ + ++K I Sbjct: 361 VGVASDKNAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420 Query: 469 DKMLQTLLEGVK 480 +++ +L ++ Sbjct: 421 NEVFDSLFSIIR 432 >gi|327398477|ref|YP_004339346.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411] gi|327181106|gb|AEA33287.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411] Length = 580 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 52/427 (12%), Positives = 132/427 (30%), Gaps = 20/427 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVT 51 ++ N + + N+ N + Y R + Sbjct: 3 TIFDALNIGVSGIFVNKAAINTTGNNVANVNTPGYSRERVDILPSMPMYSYAGVFGTGAK 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + S + D+ + A + + L S + + ++ + + ++ Sbjct: 63 IDQIISTRDELIDRRVRASNQEMSYYNKLNSSMDEIQSIF-NEENGVGLKGAMDQFFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S N + + VI+ + + + + +I+ + D ++ ++ + + Sbjct: 122 HALSLNPDLETARQQVIEKGLTLSKAIKDANASLNQIKTNLDDQVSSTVTEINSLSKRIA 181 Query: 172 VVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGTT 226 +N IK D A+ DQR VLL+K+S I ++ + G Sbjct: 182 QLNYEIKKAELGDKDHANTLRDQRSVLLEKLSSIADVTILEGSYNNQTKPEMTVLLGGMP 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + + + F++ + S + G + A+L +RD ++ + Sbjct: 242 LVSGKDYNELTAEK--LNGSEYYRVYFVEPSNAKVDITSRIKNGSLGAILNLRDKIISEY 299 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +N +DE+A+ LI ++ P I N + T Sbjct: 300 KNNIDEIAKTLIQEINKIHSSGAGLT--PYSQIEGIYAADPNAALSIPNATGLDIAVKTG 357 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + ++ ++ + D + F+ + +++ + Sbjct: 358 SFKLKVIDENNNEVGVFTIPVNEDDHLQAQDPSDEHSLIERFNNIMQGYAQMSISPAGKV 417 Query: 407 SIGWLEK 413 I + Sbjct: 418 QIKAIGN 424 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 5/197 (2%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P ++ L E ++ +++ + + D+ + Sbjct: 389 PSDEHSLIERFNNIMQGYAQMSISPAGKVQIKAIGNYKFAFTYDSSNLLAATGINTFFTG 448 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + S+ + + K L ++ + +N T+ EY Sbjct: 449 HNSSDIDVNRIVQNDPSKIAAGKTL-----NPGDSSNAQTIAQVQLNKVMVNNTQTIDEY 503 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +G + + +++ + V+ + + + GV+L EE + LIK +++Y + K Sbjct: 504 YNAFLGSIGSTKQRFDEIYKAKEAVYQQLKTTQQSLEGVSLDEEAANLIKFQRAYQANAK 563 Query: 464 LIMFTDKMLQTLLEGVK 480 I D M QTL+ V+ Sbjct: 564 FISVVDDMTQTLINMVR 580 >gi|219685806|ref|ZP_03540615.1| flagellar hook-associated protein FlgK [Borrelia garinii Far04] gi|219672639|gb|EED29669.1| flagellar hook-associated protein FlgK [Borrelia garinii Far04] Length = 627 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 120/336 (35%), Gaps = 24/336 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFVSMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + + + + S+G Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + + ++ + V+ GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWSILWANNDKVNLET------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 N+L+ +A +I +E + G Sbjct: 296 NEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFF 331 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 46/347 (13%), Positives = 107/347 (30%), Gaps = 12/347 (3%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---------FLDQ 193 ++ + D+EI+ EI+ L + + + I + D Sbjct: 281 GKLGSLLNIRDEEIKNEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDD 340 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 R + + + N+ ++ L N + P Sbjct: 341 RGRYDTNGNGQFDSVHVFKINSTNEIFPE--EKLGFYGTLKFEATNSNEIIEIPYNAPDT 398 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + ++ N +A +I + + V +N+ I N Sbjct: 399 VQDLINRINNSNAQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372 G A +++D T ++P + D + + N Sbjct: 459 ESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAAWIKVADTIDLDPSKIAAGINSPTNE 518 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 I + + + I N+TL +Y N+ + S + + Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + GVN EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625 >gi|320107049|ref|YP_004182639.1| flagellar hook-associated protein FlgK [Terriglobus saanensis SP1PR4] gi|319925570|gb|ADV82645.1| flagellar hook-associated protein FlgK [Terriglobus saanensis SP1PR4] Length = 467 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 165/489 (33%), Gaps = 43/489 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------ISPENVTV 52 SL ++ + A+ N+ + NI N Y R+ + + Sbjct: 3 SLTSLLSIARQALANSQTAIDATGTNISNQHTVGYTRKTAVFAESDTVDVGGSLLGSGAT 62 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN---NSPTHYISKLRD 109 VT S+ + ++ + + A GQ + + + + + + + Sbjct: 63 VTIVSQRDRILEQRMQQQTQADGQTSARLTALQSVDSIFQTTTSSADASGIGSSLDAFFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + N ++ + V+ +A+ ++ ++ D +++ ++ + + S+ Sbjct: 123 SFSALEANPTDGATRQAVLTSAQTFATAIQAASSQLTSQATDLGQQVSGSVAQVNQLTSQ 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I + DA D DQR L+ ++S ++G+S NN + + T++GT L Sbjct: 183 IAALNGKISSTSPD-ADAGDLEDQRQELITQLSGLVGLSQSSTANNGIALTTTNGTPLVG 241 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +V +F VS++ SA+ G I +Q RD + Q Sbjct: 242 GNISYNLTAQNVGGSVH-----VFGQQNGVSTDITSALSGGSIAGDIQARDVDIASAQTS 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A + + + ++ + G I PS Sbjct: 297 LDTLAFDVATAVNTQNSAGKDENGAVGGNIF-------------------------GVPS 331 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + L + +A + I T + + + Sbjct: 332 SASGAAASLTVSLTDPAGIAAASGTDGAGGSTNATALAALGSGKIVGGETPASFFGSFLT 391 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 L S + + + + GV+L EE S L + ++SY + K+ D Sbjct: 392 QLGTTISGATTDETVTAAELTQATAQRNALSGVSLDEEASNLTEYQRSYQAAAKVFSIVD 451 Query: 470 KMLQTLLEG 478 +M + + Sbjct: 452 EMFASAINL 460 >gi|291562058|emb|CBL40874.1| flagellar hook-associated protein FlgK [butyrate-producing bacterium SS3/4] Length = 557 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 70/550 (12%), Positives = 154/550 (28%), Gaps = 76/550 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + FN A + ++ +N+ N + Y R+ + Sbjct: 5 TFSGFNTALSALQANQKRLDITGQNLSNMNTAGYTRQQLEASSLNYTNPVSHYSNGNETA 64 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V++ D + S+ LQ+ + D+ + Sbjct: 65 VGFGVSMDRVSQIRDPYLDIQYRSQSADCSYTNRLQTALNSLSKVL-DETTISGIRQAFD 123 Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI------- 156 ++ +L S S+ I + + V FN ++R++ + + + + Sbjct: 124 DVQSTLTSMQDPAKVSDPIYESELRTKMQSVCNLFNQASRQITQAEQNEFQRLTGEGSSE 183 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + ++ + L ++ +N IK + H + + D+R++LL ++S I + T ++ Sbjct: 184 QGDVQKINDILRQIGDLNVQIKRNQVAGHPSLELQDERNLLLDELSGYIPVETRYYKDDA 243 Query: 217 MV-----VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 Y ++G + + D MN +S + + G G+ Sbjct: 244 HSGNNAYDYDANGAVIGKKDWPDDLEVSMNYIDAQGKSQKLILVNGSDLGADGLTKNYGQ 303 Query: 272 IKALLQIRDSVV---------------------------------------PIFQNQLDE 292 + L + Q LD Sbjct: 304 LSVLNRDHQPAASVSDPANISIKFEKAPSYQVNGQAAADVYAELKGIHFEGGSLQASLDM 363 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-----YRSN 347 + + G + S + ++ Sbjct: 364 LQKTGTGKVINGSTAVDDVRGYQYYSEKLDQLASTFAKSMNDSNNGKNHTDKNLLSNSTD 423 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 S + D+ T +Y N Sbjct: 424 DSTTGITAGNIGISKGWTSGTIHISTDGTNRTDTILDMIAAMKDTKKLNGKTFADYMNNL 483 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 L + S + V N I +S + GV+L EE + ++ +YN +++L+ Sbjct: 484 STQLASDSSSNQTALKTGTTVLNSIQDSRDSLSGVSLDEEATNMMAYVSAYNAASRLMTA 543 Query: 468 TDKMLQTLLE 477 D++L TL+ Sbjct: 544 LDEVLNTLIS 553 >gi|203284102|ref|YP_002221842.1| flagellar hook-associated protein [Borrelia duttonii Ly] gi|201083545|gb|ACH93136.1| flagellar hook-associated protein [Borrelia duttonii Ly] Length = 627 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 61/419 (14%), Positives = 147/419 (35%), Gaps = 28/419 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + ++ N+ NA Y R+ + Sbjct: 3 STFSGIEIGKKSLFAHKDAMNTVGHNLTNATKPGYSRQRIIMKTEMPIYAPQLNRANKAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + D + S +G L F +L E + ++ S + Sbjct: 63 QLGQGIMVQSIERIRDELLDIKIAEESHHLGYWNLKDRFISLLENVY-NEPEEQSMRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S + SK +++ + V+ + +++I A+ EI++ + Sbjct: 122 NDFWASWQDLSKQPQGLAERNIILERGQAFVEVVTSRFHSLERIYTMANDEIKITTEEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A K +D +D+RD+++ K+S +I IS + + + + +G Sbjct: 182 NYLRNISDLNKQIAKAIAMKDHPNDLMDERDLIIDKLSNLISISIENKRDPNEFLIHMEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N ++ + + N GK+ AL+ IRD+ + Sbjct: 242 KHLIQGTIANELILEAANGPTKTKWNILWNNRETANINT------GKLGALINIRDNEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340 N+LD +A + +E + G + L + + S V Sbjct: 296 NEINELDNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSV 355 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + ++ + + + + + + + Y + + D + + VT Sbjct: 356 HIFKVNSTNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVT 414 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 36/331 (10%), Positives = 95/331 (28%), Gaps = 8/331 (2%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + I ++ + L N I F + D D I ++ Sbjct: 302 DNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSVHIFKVN 361 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + + D N+ + + + + + Sbjct: 362 STNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVTARINENK 421 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 K +IKA+ + +++ L + + D Sbjct: 422 KFEIKAVKEEDKDSTIFRIKHIEDSGLFLTNYTGILNASGI---EGAYNYQNINTTDQLT 478 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + + + S + N D + Sbjct: 479 NTTRYSISPLKNPSAWIRISKIITEDPSKIASGIKTPTNNTPIGDNKVALRIA----SFV 534 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + + N TL +Y N+ + + + + ++++ + GVN EEL Sbjct: 535 NSQIMVEKNSTLNDYFVNTASNIAIKGQIAEVTKNSQEQILKNLTDLRLSISGVNKDEEL 594 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +I+ +QS+ ++K I + +++ T++ + Sbjct: 595 ANMIEFQQSFIAASKFINVSAELIDTIINKM 625 >gi|319787115|ref|YP_004146590.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas suwonensis 11-1] gi|317465627|gb|ADV27359.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas suwonensis 11-1] Length = 625 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 58/454 (12%), Positives = 142/454 (31%), Gaps = 26/454 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 +V + + +++ N+ N + + Y R+ V Sbjct: 2 SVLSTGTGALLAFQRALSTVSHNVANVNTEGYTRQRVDFAARRPSDYGYGHVGNGTQVAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + L + + L + + + +D + S DS+ + Sbjct: 62 IRRLADELATSRLLDSGGELARLEQLSTLTGRLDTLFSD--SATNLAGVWSDFFDSVSAL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N + + V+ A + F +++ + ++ + ++ S + R E+ +N Sbjct: 120 SSNAAGAAERQNVLAEAGALAGRFRQLDGQLRALDSEVNNKLLAGASEISRLAGEVARIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + + A D LD+RD L+ ++ G + + ++ + V+T+ G L V Sbjct: 180 GEI--GSDASKAAPDLLDRRDQLVAELVGFTGGTALSQDGGPISVFTAGGQPLVVGVQAS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++Y + ++G ++ G + L++ R++V+ +L +A Sbjct: 238 SITTVPDTYRPERLQ--LALEGGGTTTVLDQRALGGSMGGLVEFRNTVLDPAAAELGRIA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------CVNPQYRSNP 348 + +F+E + G D L N+ V+ + Sbjct: 296 VAMAATFNEGHAAGMDLYGNLGGSFFDVPAPLVNQHAGNAGNASLQARVGDVSALSGQDL 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G + + + + + + LL+ + Sbjct: 356 VLRFGEGGWTALRADTGEAVPMTGSGTAADPFVVAGISLEVSGSAAPGDRFLLQPTAGAS 415 Query: 409 GWLEKNRSDSHDLHMK----SQVVFNHISESYSN 438 G + SD + ++I + Sbjct: 416 GSIGVAISDPSRIAAALPVRGSAAVSNIGSGVLS 449 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 38/429 (8%), Positives = 99/429 (23%), Gaps = 5/429 (1%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 ++ + + V +A+ Q S +S T R + Sbjct: 196 RRDQLVAELVGFTGGTALSQDGGPISVFTAGGQPLVVGVQASSITTVPDTYRPERLQLAL 255 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A+ + + + + Sbjct: 256 EGGGTTTVLDQRALGGSMGGLVEFRNTVLDPAAAELGRIAVAMAATFNEGHAAGMDLYGN 315 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT---LFETVPR 233 + + + +G + + + ++ + G T Sbjct: 316 LGGSFFDVPAPLVNQHAGNAGNASLQARVGDVSALSGQDLVLRFGEGGWTALRADTGEAV 375 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + + G ++ P + + S L Sbjct: 376 PMTGSGTAADPFVVAGISLEVSGSAAPGDRFLLQPTAGASGSIGVAISDPSRIAAALPVR 435 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + E + + + + Sbjct: 436 GSAAVSNIGSGVLSGLRVEAAGNPALLQEATIEFLDSGEYMVDGAGPFDYTPGQRISANG 495 Query: 354 GGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V +A ++ + D ++L + Sbjct: 496 WSVVLDGVPAAGDQFVVARNGTGSGDNGNASRLANLDDARVVSGGTMSLNGAVGGLTTMV 555 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + QV+ N + GVNL EE + +++++Q+Y + ++I D M Sbjct: 556 GSAARQAEYAADAQQVIHNDAQAARDAVAGVNLDEEAANMLRLQQAYQAAAQIISTADTM 615 Query: 472 LQTLLEGVK 480 QT+L V+ Sbjct: 616 FQTILSAVR 624 >gi|328545572|ref|YP_004305681.1| flagellar hook-associated protein [polymorphum gilvum SL003B-26A1] gi|326415313|gb|ADZ72376.1| Flagellar hook-associated protein [Polymorphum gilvum SL003B-26A1] Length = 459 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 81/483 (16%), Positives = 184/483 (38%), Gaps = 46/483 (9%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRSENKNMF 63 A + + Q + N+ NAD + Y R+ + + VTV S + Sbjct: 10 IATSSLASTQVQLSIAANNVANADTEGYTRKTASSVALTTAGTGSGVTVGKITSGVSRIL 69 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS----PTHYISKLRDSLESYSKNLS 119 L A ++A G+ + + + + ++ + ++ + ++ + + Sbjct: 70 LADLVAATTAAGEAGVTADYLDRLQSLMGSTSSSSGNGTSLANSLAAVEEAFAALADTPE 129 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L T ++ +E+ + VQ +R+ AD +I +++ ++ + +N+ I Sbjct: 130 SVSLAATAVNELDELAAQLRALSASVQSLRSAADTDIAAAVTSANDTITAIASLNEQILA 189 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A D DQR+ L +S+ +G+++ + ++ M VYT+ G L ++ ++F+ Sbjct: 190 TAARGQSTADLEDQRNQALATLSQSLGVTSFIADDGSMKVYTTTGQVLVDSRAHLLSFDP 249 Query: 240 MNSYTVTSESNPIFIDGVVVSSN---QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 +S + ++ + +++ +G+I ALL +RDS +P Q LD +A Sbjct: 250 SSSVGAGVVYDGSGSGLSGITVDGKDITASMTEGEIGALLALRDSTLPEVQEMLDALAST 309 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ S + P + ++ + + G Sbjct: 310 LVSSLNAVSPDLLS----------------------------------GTDATDITVNGD 335 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + G K D T +YA + + + + Sbjct: 336 LLRTPSALLPETGGADIATALVEALQGKTAFPDTARQGGGESTFADYAARLLSLVVSDAN 395 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ IS++ S+ GVN+ EE + + +EQ Y+ S +++ +M + LL Sbjct: 396 SASAHLERATAQLAEISDTMSSLYGVNIDEETARMSNLEQLYSASAQVLSILKQMYEDLL 455 Query: 477 EGV 479 + Sbjct: 456 AAI 458 >gi|260222474|emb|CBA32074.1| hypothetical protein Csp_D30300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 656 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 46/390 (11%), Positives = 124/390 (31%), Gaps = 12/390 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ N + NI N + Y R++ + + V V T Sbjct: 2 SILNIGTRALQANQIALQTAGNNIANVNTPGYSRQNVVLKAVEGQFSGGGYVGKGVEVQT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + SS + + + + ++ IS + ++ Sbjct: 62 IQRSFSAFLTRQATLASSTQSADVVRSNNLKQLQDIF--SGGSDGLGASISDMMNAFSDV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + S+ + +E F +A+ + +R +E+ + + + VN Sbjct: 120 ASSPSDLTARTVALTRVDETAGRFRAAAQALDDLRPSVTQELNQIADKINNLATGIASVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 D+I + +D LD+RD L++++++ + ++I + + ++ + L Sbjct: 180 DSIAKARGNGQPPNDMLDRRDQLIRELNQYVQTTSIPATDGTVGIFIAGSQPLVLGTNVS 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + S + A+ G++ L++ ++S + +N L + Sbjct: 240 PVSIINDDFGDPQLSKLAIERDGKLVPLDDQALGGGEVAGLIRFQNSDLVEGRNLLGRLT 299 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + +E+ + + + PG + I + VN S + D Sbjct: 300 LAITTAMNEQHALGLDLDGNPGSNLFSQIDINTTANIRVPQAPAIVNTGTASLSLGISDV 359 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + ++ Sbjct: 360 TKFAASDYELTYTSSTSGTIVRKSDGQVTS 389 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 48/432 (11%), Positives = 119/432 (27%), Gaps = 13/432 (3%) Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V N + D L + L + S L Sbjct: 235 GTNVSPVSIINDDFGDPQLSKLAIERD-----GKLVPLDDQALGGGEVAGLIRFQNSDLV 289 Query: 109 DSLESYSK-NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + L+ ++ N ++ I A+ + + + Sbjct: 290 EGRNLLGRLTLAITTAMNEQHALGLDLDGNPGSNLFSQIDINTTANIRVPQAPAIVNTGT 349 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L++ + AS ++ +++K + + DG Sbjct: 350 ASLSLGISDVTKFAASDYELTYTSSTSGTIVRKSDGQVTSFPQSPAPAAPALAVVDGLVF 409 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + ++ + + I ++ G + + Q Sbjct: 410 NQNAGTANLGDRYLFKPYATSVSNISRVFSTPRQLAVASPVAGAMGTTNKGSLQ-----Q 464 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 L ++ + + S + + V+P + Sbjct: 465 VSLTALSNNQSATPHAAVKLTFTSATTYTRSDELPTANTTTYTFDPNTPITAVDPLADWS 524 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + +VK+ A D+ + ++ + D + L + ++ Sbjct: 525 LKLTGTPQAGDTFTVVDVKDPAYKLDIKLNSGNATALMKLRDKP--MFDGAVLTDGYASA 582 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I + + S + ++ + + GVNL EE + LI+ +Q+Y S K+I Sbjct: 583 ISQIGIRTQSAGYAAEVSSSIAANLEKDRTAVSGVNLDEEAAKLIQFQQAYQASAKMIQI 642 Query: 468 TDKMLQTLLEGV 479 + TL++G+ Sbjct: 643 AQNIFDTLIQGL 654 >gi|90021849|ref|YP_527676.1| hypothetical protein Sde_2204 [Saccharophagus degradans 2-40] gi|89951449|gb|ABD81464.1| Flagellar hook-associated protein [Saccharophagus degradans 2-40] Length = 920 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 59/397 (14%), Positives = 130/397 (32%), Gaps = 14/397 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + + + ++ NI NA+ Y R+ + + V V + Sbjct: 4 DLLGISVTGLRASQSALSTTGHNISNANVDGYSRQRVIAETNPATRADGGYVGNGVNVAS 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L S+ + + + +D+ N + + ++++ Sbjct: 64 IERIVNSFVTTQLRTDSTLYSDLNTYHDLVSQLDNLLSDE--NTGLSGALGTFFAAVQNG 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + S + + VI +E + FNT I ++ +++ ++ + +N Sbjct: 122 ADEPSSVPVRQLVISESENLASRFNTIHSRFAAIEESVEEGLQVAVAEANALAKNIADIN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + S +D LDQRD + K+S+II I T + N ++ V +G L Sbjct: 182 RKVAEAFGSGDKPNDLLDQRDETILKLSKIISIQTFTQGNGEVNVLIGNGQNLVVGDTAR 241 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + G V + V G+I LL+ RD+ + N+ +A Sbjct: 242 TLGLVDSEEDASKKDLTFTTGGSVQV--LTNIVSGGEIGGLLRFRDTAMTDTYNEFGRIA 299 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L +F++ A +N G + + + I ++ R + D Sbjct: 300 VTLADTFNKIHTQAITLDNEYGEDFFKSVNEPITAANRVIGDSNNSVATNRQMYLNIVDS 359 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + G + ++ + I Sbjct: 360 TELEASAYEIEFQAGGRYTITRSSDNASVTSGILPGN 396 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 54/409 (13%), Positives = 109/409 (26%), Gaps = 25/409 (6%) Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 S + ++E SA + + S+ + + +T+ Sbjct: 536 TDSGERLVNSGGAVIGIEEGRSAVVGTGGVLNNNYPSEVFTFTLPSQTQAGAAVTQTIYT 595 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + V + +A IEL + +N D + Sbjct: 596 PPNASARELASLLSNVPGVSVNASNYIELSNFQVSYVEPLQLSLN---------GTDLLE 646 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 + +S + + + + + + D +F + Y V++ Sbjct: 647 YEFDPITSTNVLSANVPDPAVNPDEFNNYI--------ESRINSDASFAQNGIYAVSATD 698 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 V + + +G + I A + D N A + S Sbjct: 699 ELTGYSEVRIFATEGDNLQMDLIAAANESLDVGDGSNSNVRLTGAGAGVTSSI------- 751 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 L Q + N K + L Sbjct: 752 -VSGGKFDIAMADGVSLTTFPPQSRLLGDTTAEDFAKNRYMGIQVNLSGKPQAGDSFTLD 810 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 D + I + +L E + I + + S S S+ V Sbjct: 811 FNIDGAMDNRSALALVAIQSSNLVQGKSASLSESYGSLIERVGIDTSSSRINMEASKQVL 870 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 H + ++ VNL EE + LI+ EQ Y+ + ++I + TL+ Sbjct: 871 EHTTAMRNSISAVNLDEEAANLIRFEQMYSANAQVISVARNLFDTLINS 919 >gi|114569239|ref|YP_755919.1| hypothetical protein Mmar10_0688 [Maricaulis maris MCS10] gi|114339701|gb|ABI64981.1| protein of unknown function DUF1078 domain protein [Maricaulis maris MCS10] Length = 461 Score = 147 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 63/488 (12%), Positives = 143/488 (29%), Gaps = 35/488 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54 MS+ + + + S ASI NI N + Y R + T S + + Sbjct: 1 MSINSALLAGASGLISNSNALASISDNIANVNTVGYKRASAVFTPLYDSDSSTKGYSAAG 60 Query: 55 QRSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 S + +L A SS + F +++ + + S + Sbjct: 61 VNSVARLAIGESGLLTAGSSPTDLAISGRGFFVVRDDANVNSSDPVSF-TRAGRFTPDTN 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y +N + L + V QN + + E + Sbjct: 120 GYLRNDAGKYLSGWPVAADGSVPQNPSDLNALETINLSSIGGAAEATT---------IMG 170 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N ++ A D + ++ + + TL ++ Sbjct: 171 INANLQQSQAISADEATYDATASATNM---SSGTVTPDFQRSIPFYDSVGGVRTLTISML 227 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + ++ + + +V + + + ++ +P + L Sbjct: 228 KSSTPNQWHAEVHMVPATDLTTGAGLVDGQMLTGTVAFDAQGRIDSANTTLPTQLDFLSS 287 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +G+ + A + QY S + L Sbjct: 288 TNAAALGATEFQWAAATGIDAQSIALDFGSPNAPGG------------FTQYDSPSALLS 335 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + S ++ ++ + + + + PVA L A++ + Sbjct: 336 TNVNGSAFGNFSSVDVDDDGFVFAKFNNGIVRKIYQIPVATFVNPDGLE--AQSGGTFTV 393 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S ++ L+ I+ S + V+L E + LI +++Y+ S+K+I D+ML Sbjct: 394 TPESGAYTLNPPGLGSSGQIAASTLESSNVDLANEFTSLITTQRAYSASSKIITTADEML 453 Query: 473 QTLLEGVK 480 + + Sbjct: 454 DEAIRMKR 461 >gi|313106041|ref|ZP_07792300.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa 39016] gi|310878802|gb|EFQ37396.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa 39016] Length = 682 Score = 147 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + +S + + ++ + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S + V+ AE + + FNT ++ K + ++++ S + + Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D +D RD ++K+SE+IG++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + N V G++ LL R+S + N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L + +++ + G + I D D + + N + Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 43/444 (9%), Positives = 92/444 (20%), Gaps = 13/444 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 R + V S + + +L Q L + ++ Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 +L + L A+ + + + Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L+ L + + F D + + + Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGTGPYTLSFKDANGIDQGFNLTLDQLPAAGDRFTL 424 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + T ++ N + G + + Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPAVLQGA 484 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + D L + + N + ++ Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWSY-VDKDGNALTGSPTLTSGNTNTVRMAFTD 543 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 Y S + K + L + NT Sbjct: 544 PSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-----NLLALQTKPTVGGTDNT 598 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T E + + + S V +S + GV+L EE + LI+ +Q Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 Y S ++I + TL+ + Sbjct: 659 YYGASAQVIQVARTLFDTLIGAFR 682 >gi|293605009|ref|ZP_06687405.1| flagellar hook-associated protein 1 [Achromobacter piechaudii ATCC 43553] gi|292816614|gb|EFF75699.1| flagellar hook-associated protein 1 [Achromobacter piechaudii ATCC 43553] Length = 557 Score = 147 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 72/429 (16%), Positives = 137/429 (31%), Gaps = 18/429 (4%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58 A N A A+ NI NA Y R+ +T+ + V V T Sbjct: 6 TALGGLNAAQAGLATTSHNINNATTVGYNRQRVLTSTAGAQATANGYIGRGVQVDTIERS 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + K L + Q L F + ++ + ++ S+ + + Sbjct: 66 YDSFLYKQLVGAQGSGAQ--LQTQFAQVSQINNLFADRTVGIAPGLTDFFTSMNTVASKP 123 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++ ++ A + ++ E+Q +R + +I + + +L + +N I Sbjct: 124 ADPAARADLLGKANSLTTQIRSAYSEMQNLREGLNTQISTTVEQVNSYLGRIDDLNTQIS 183 Query: 179 FK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 A+ +D LDQRD + ++++++GI+T + N + T G +L Sbjct: 184 LAAGKANGSPPNDLLDQRDQAVMELNQLVGITTYEQGNKINISLTKGGQSLLSGTTLYPL 243 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +S + + + S V G + LLQ R + + QNQL + Sbjct: 244 QAVPSSKDASRTVVAYTLPAGSGKTVAVEMPDSDVTGGSLGGLLQFRATSLDTLQNQLGQ 303 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA L SF+E+ + PG S N + Sbjct: 304 MAVGLALSFNEQHKQGLDQNGNPGTDFFSIGSPTGVPNTANKSNAQITGQFTTLNNVNAK 363 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 D + V + + N N + A +T+ + W Sbjct: 364 DYEISFDGTNYQVLRMPEGARVYNGPATGTPPNATLNLDAEAGVTLTINAPPQAGDKWSL 423 Query: 413 KNRSDSHDL 421 D+ Sbjct: 424 SPTRDAARD 432 >gi|203287640|ref|YP_002222655.1| flagellar hook-associated protein [Borrelia recurrentis A1] gi|201084860|gb|ACH94434.1| flagellar hook-associated protein [Borrelia recurrentis A1] Length = 627 Score = 147 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 61/419 (14%), Positives = 147/419 (35%), Gaps = 28/419 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + ++ N+ NA Y R+ + Sbjct: 3 STFSGIEIGKKSLFAHKDAMNTVGHNLTNATKPGYSRQRIIMKTEMPIYAPQLNRANKAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + D + S +G L F +L E + ++ S + Sbjct: 63 QLGQGIMVQSIERIRDELLDIKIAEESHHLGYWNLKDRFISLLENVY-NEPEEQSMRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + S + SK +++ + V+ + +++I A+ EI++ + Sbjct: 122 NDFWASWQDLSKQPQGLAERNIILERGQAFVEVITSRFHSLERIYTMANDEIKITTEEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A K +D +D+RD+++ K+S +I IS + + + + +G Sbjct: 182 NYLRNISDLNKQIAKAIAMKGHPNDLMDERDLIIDKLSNLISISIENKRDPNEFLIHIEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N ++ + + N GK+ AL+ IRD+ + Sbjct: 242 KHLIQGTIANELILEAANGPTKTKWNILWNNRETANINT------GKLGALINIRDNEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340 N+LD +A + +E + G + L + + S V Sbjct: 296 NEINELDNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSV 355 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + ++ + + + + + + + Y + + D + + VT Sbjct: 356 HIFKVNSTNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVT 414 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 37/331 (11%), Positives = 95/331 (28%), Gaps = 8/331 (2%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + I ++ + L N I F + D D I ++ Sbjct: 302 DNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSVHIFKVN 361 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + + D N+ + + + + + Sbjct: 362 STNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVTARINENK 421 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 K +IKA+ + +++ L + + D Sbjct: 422 KFEIKAVKEEDKDSTIFRIKHIEDSGLFLTNYTGILNASGI---EGAYNYQNINTTDQLT 478 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + + + S + N D + Sbjct: 479 NTTRYSISPLKNPSAWIRISKVIAEDPSKIASGIQTPTNNTPIGDNK----AALRIASFV 534 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + I N TL +Y N+ + + + + ++++ + GVN EEL Sbjct: 535 NSQIMIEKNSTLNDYFVNTASNIAIKGQIAEITKNSQEQILKNLTDLRLSISGVNKDEEL 594 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +I+ +QS+ ++K I + +++ T++ + Sbjct: 595 ANMIEFQQSFIAASKFINISAELIDTIINKM 625 >gi|94265700|ref|ZP_01289439.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453786|gb|EAT04158.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 875 Score = 147 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 52/418 (12%), Positives = 129/418 (30%), Gaps = 13/418 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49 MS + V N A+ N+ N D Y R+ Sbjct: 1 MSGITHVLNLAKQALLTHQSSIQVAGHNVANVDTPGYTRQKINIEANTAFPSAAGIMGGG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + SS +G Q + E + ++ + +++ + Sbjct: 61 VLADGIARQYDQFMVERIAKQSSLMGNLEAQQQALRVVEPIF-NEARGLALNDLMNQFWN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + S N + V+ + + + + T + E+ + R+D ++ I+++ + Sbjct: 120 SWQELSDNPETLGARQNVLQHGQLLADHMGTMSSEIIRARSDIGTNLKSAINDINSISDQ 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I + +A+D D+RD L++++S ++ ++ V +DG L E Sbjct: 180 IAQLNSKISTAEVGRAEANDLRDRRDNLVKELSTLVDVNHFADKRGAYSVMLTDGHPLVE 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + ++S + G ++ ++ + + Sbjct: 240 GDESWQVDWVDDQLHWIGTDATGRTNSRALNSEKLGGKIGGWLEIHGELAAGDPNNYAGR 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A LI ++ + + + + ++ + Sbjct: 300 LDALANALIRELNQLHSSGVGTVRFDDELVGAELGAQTSVATGQVAANTANRNIPAGSIK 359 Query: 350 FLR-DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 D G + N + + +N + V + A + Sbjct: 360 VNGLDIGQIRGAAPVNGRATEKAANAVNAINQADAGVTARLTTQVAGGEVDTTDLAED 417 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 50/378 (13%), Positives = 116/378 (30%), Gaps = 17/378 (4%) Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + LG + E + +D IE + + Sbjct: 515 NLHGFDADDDPMELDKLAKALGFEGQNIIGETHVADAQHNTGEITLFSDQSYTIEAGVDD 574 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 D + D D G + + + Sbjct: 575 -NILAQLGLHDVDQRGDQRGDGQLRVVPGDGPDDAFLLNGFKHGEQLDTEDGSFSIWLYH 633 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 D +L P +++ E+ + + + I + + + P ++A ++ Sbjct: 634 DDGSLALPQPVEVSLERAYTARDAATAINNAIIEAGGTDDPEAEHPIPWLQAKFDPKEQR 693 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + N + A + + + L+ + TI +N Sbjct: 694 FTLTPNDGYQFALDGARQE--------DGTHGRDTSNFLQVAGLNTFFTGHSAGTIGINQ 745 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + ++L + + + + AG + +K + +L Sbjct: 746 TVADDLNYL-----AAGQVRDDGQVYAGDNTNALEISNLQHK---DNIKFEGGRTNSLNG 797 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + IG + +++V N ++E GV+L EE++ LIK + +Y + Sbjct: 798 FYNSLIGDIGNKGRTIGRNLEFNELVLNQMNEMRDAVSGVSLDEEMANLIKFQHAYTAAA 857 Query: 463 KLIMFTDKMLQTLLEGVK 480 ++I +D+ML TLL+ V+ Sbjct: 858 RMISMSDEMLVTLLDTVR 875 >gi|54308103|ref|YP_129123.1| flagellar hook-associated protein FlgK [Photobacterium profundum SS9] gi|46912529|emb|CAG19321.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium profundum SS9] Length = 626 Score = 147 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 53/338 (15%), Positives = 115/338 (34%), Gaps = 15/338 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V Sbjct: 3 FDLLNMGSQGLLTAQRQLNTTSHNINNVNTEGYSRQSVVQQTNDPIWWGGSQHGTGVHAA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + + + M A+ + +++ D++++ Sbjct: 63 EVRRGYDQFATNELNLTTTNLSYATEREGQLGRLDNMLAN--SSKKIPEDMNQWYDAVKA 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K VI+ A+ V N S + K + +A++ + ++ + EL V Sbjct: 121 MADSPNDLGSRKVVIEKAKLVASGLNDSYGTLAKQKNEANEVLSGTLNRVNDIGRELVDV 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + A+ AS D +D +D+ L+ ++S+ ++ +NN V G TL Sbjct: 181 HKALVKTPASGAD-NDLMDRHQNLINELSQYTKVTVTPKNNETFNVMIGSGHTLVSGTES 239 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 I + GK+ AL Q RD + +++ + Sbjct: 240 SELRMINGKPDPQQTQLAIVEGKALKPIRNDDI--GGKLAALFQYRDETLSQAMDEMGRI 297 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 A S +E + G + + D + Sbjct: 298 AIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDPASAAA 335 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/359 (11%), Positives = 104/359 (28%), Gaps = 13/359 (3%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 D ++ F + + + + ++ S+ +N + + Sbjct: 271 DIGGKLAALFQYRDETLSQAMDEMGRIAIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDP 330 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 R + + + + + + + F+ + + +V Sbjct: 331 ASAAARARIPAGSTADLKVYI----EDINQLKVGEYGLTFDGSQHTLTSPDGSRQSVVPS 386 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQNQLDEMARVLIGSFS 302 NP + S + G+ A+ RD + + + Sbjct: 387 GNPAAFSVDGLRIQMDSPIGIGERIAIRPTRDGAGNIKALLDDPAKIAAQSYLSSATKTN 446 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + N P F D + I +PQ + GG+ Sbjct: 447 GKADLVINGTGGPNEFQVAVSPDASQFAVLDMKGNILQDPQVYPPSGEVNVGGTRFTLSS 506 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVA---GINTNVTLLEYARNSIGWLEKNRSDSH 419 + +L ++ N + D A + ++++ + ++ + Sbjct: 507 GAMGGDVFAVNLNAADGNNGNLIKMQDLQAQKIMNDGRSSVIDVYEGLNTEMGVQKASAS 566 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L V + + GVN+ EE + ++K +Q+Y S++++ + TLL Sbjct: 567 RLKEVGLVEKDAAQSRVAEIGGVNMDEEAANMMKFQQAYMASSRIMSVANDTFDTLLNI 625 >gi|329890330|ref|ZP_08268673.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC 11568] gi|328845631|gb|EGF95195.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC 11568] Length = 735 Score = 147 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 65/449 (14%), Positives = 139/449 (30%), Gaps = 21/449 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL ++ N A + N A Q + N+ N + YVR+ V + Sbjct: 1 MSLNSIMNIATSGMNAAQTQLRVVSDNVSNVNTPGYVRKIADQQSWASQGVGAGVEIARI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R S+ G+Q + + M D N+ I + + + + Sbjct: 61 RLATDRFLQAASLNASADAGRQTVRYELYDRIQSMFGDPGSNSGFFSQIDSVFAAFAASA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 +N + + I + + ++Q +R DAD I+ + L ++ +N Sbjct: 121 ENATSGPARQDAIWKTQALFDEAARINSQIQSVREDADARIKSAVETANSLLEQIEKLNV 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I T D+ + L+ ++S ++ + R + + T G L + Sbjct: 181 EIAKATVINADSSGAQTAQAALIDQLSGLMDVRITGRAVGGVEIRTGAGILLAGQGAAKL 240 Query: 236 NFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ + + + + N + + + + + G+IK LL++RD P +L E+ Sbjct: 241 DYVRAGAVSAETVFNEVMVIEPPAGKARSLAEGLGSGEIKGLLELRDGEAPATAERLAEL 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------- 346 L + + + L + + L+ L T V + Sbjct: 301 MSRLADELNRAHNASSAAPPPNSLTGRNIGQSLETALQGFTGRTSIVITNDQGVALQKID 360 Query: 347 ----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + ++ + N L + DP A N Sbjct: 361 LDLATLNPATFLADLNAQLGANGSASFVDGRLKIEGAPGTGVVVVDDPAAPSNKGGRGFS 420 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + S ++ + Sbjct: 421 HFFGLNDLI---TSAQPAIYETGMTGASQ 446 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%) Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 ++L YA G + + + + + + + + + GVNL EEL + +Q+ Sbjct: 653 MSLARYASELSGEIGSRAAMAKNNAVSATALAKEATARRVSVEGVNLDEELVLMTTYQQA 712 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 +N S +++ M LL V+ Sbjct: 713 FNASARMVQAAKDMYDILLGMVR 735 >gi|224534287|ref|ZP_03674865.1| flagellar hook-associated protein FlgK [Borrelia spielmanii A14S] gi|224514389|gb|EEF84705.1| flagellar hook-associated protein FlgK [Borrelia spielmanii A14S] Length = 627 Score = 147 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 124/352 (35%), Gaps = 24/352 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + + ++ N+ NA Y R+ T + Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMTTTTPLYAPQLNRAKKQG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIMVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISMLEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYTMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ +I +S + + + + S+G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLINVSIENKQDPNEFLIHSEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + + ++ + GK+ +L+ IRD + Sbjct: 242 RHLVQGSIANEFRLEATNGPTRTRWDILWTNNDKAHLKT------GKLGSLINIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDDRGRYDTN 347 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/352 (11%), Positives = 104/352 (29%), Gaps = 22/352 (6%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK---------------HDA 187 ++ + D+EI+ EI+ L + + + + I D Sbjct: 281 GKLGSLINIRDEEIKNEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDD 340 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D I I++ + + +I N+ Sbjct: 341 RGRYDTNGNGQFDSVHIFKINSTNEIFLEEKLGFYGTLKFETINSSEIVEIPYNAPDTVQ 400 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + + + + ++ K +IKA+ + + + +++ L + Sbjct: 401 DVINRINNSDAQVTARINSEGKLEIKAVKEHENENITFRIKHIEDSGLFLTKYTGILNAS 460 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + D + + + S + N N Sbjct: 461 G---PEGAYDYRNIDTTDKLTAKSTYSISPLKNPAAWIKVEDIIDSDPSKIASGIKNPTN 517 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 D + + + I N+TL +Y N+ + S Sbjct: 518 EISIGDNQ----AAMRISSFGNSQVMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQ 573 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +++ + GVN EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 574 ILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625 >gi|107100531|ref|ZP_01364449.1| hypothetical protein PaerPA_01001556 [Pseudomonas aeruginosa PACS2] gi|13183733|gb|AAK15324.1|AF332547_1 flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa] Length = 682 Score = 147 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + +S + + ++ + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S + V+ AE + + FNT ++ K + ++++ S + + Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D +D RD ++K+SE+IG++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + N V G++ LL R+S + N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L + +++ + G + I D D + + N + Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 48/448 (10%), Positives = 97/448 (21%), Gaps = 21/448 (4%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 R + V S + + +L Q L + ++ Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 +L + L A+ + + + Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L+ L + + F D V + + Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFNLTLDQLPAAGDRFTL 424 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK--- 273 + T ++ N + G + + Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPAVLQGA 484 Query: 274 -ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 I + ++ L ++ D P L + Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWNYVDKDGNALSGSP---------TLTSGNTN 535 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + F G + N G D N + Sbjct: 536 TVRMAFTDPSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-NLLALQTKPTVGG 594 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 NT T E + + + S V +S + GV+L EE + LI Sbjct: 595 TDNTGSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLI 654 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +Q Y S ++I + TL+ + Sbjct: 655 QFQQYYGASAQVIQVARTLFDTLIGAFR 682 >gi|144899352|emb|CAM76216.1| Flagellar hook-associated protein [Magnetospirillum gryphiswaldense MSR-1] Length = 939 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 67/407 (16%), Positives = 149/407 (36%), Gaps = 8/407 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M+L N A + + ++ +N+ N + K YVR+ V V + Sbjct: 1 MALTLGLNTALSGLLTNQRALDTVAQNVTNVNTKGYVRKVMNQESRVLNGFGAGVQVGSV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + K + ++ +G+ ++ S+ + + + N+S +H ++ L ++ E Sbjct: 61 TRQINEGLLKDIRKQTAELGKLQVESSYYPRIDDLFGNVADNSSISHKLNDLYEAFELLG 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + + ++V F+ ++Q +R +AD+EIE + + LS++ +N Sbjct: 121 TQVDKPSIQWSSVQTGQDVADLFDRMTDQLQSLRLEADREIETTVQLINDKLSDIHDLNQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I +A D D+RD L +++ I + R + M+VYT+ G L + + + Sbjct: 181 KIVKNSAVATGTTDLEDKRDQALTDLAQYIDVQYYHRQDGSMIVYTNSGEMLVDNQDQPL 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---KGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + V P GK++ALL +RD V Q LDE Sbjct: 241 SYTANTRIDTWMTAAGGQFNKISVDGGTDDLAPLVKGGKLRALLDMRDKTVTDLQASLDE 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A+ ++ ++ + N + ++ ++T + + Sbjct: 301 AAQTMLEEVNKAHNRGTSYPNPSYRYEGSRTFAKQGQVVPNAADTAARFMFGSTTVTSAG 360 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N + A ++N Sbjct: 361 YTSLSIAASGTNPWQTTMTASAGTPFSTMSAGTTFSVDSAEDSSNNG 407 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 47/450 (10%), Positives = 112/450 (24%), Gaps = 25/450 (5%) Query: 35 NYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94 Y + V + +++ D+ ++A G + + A D Sbjct: 509 GYSTASVNLNSEGKMVIDLGVTNKSLAFRDQ----TAAADGSAATDATISFDVDGDGAVD 564 Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 ++ S ++ + + + + ++ Sbjct: 565 QTVKGFANFFGLNDFFSNSNQNSIQDSNILPSTFKTSTTRDLKILDGTGQLGP------- 617 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + + D + ++ IS + Sbjct: 618 ---------NMSIPAGSSLEDIADIINSYGRTTESAPLSLAQTTFTLTSAATISVTNTSG 668 Query: 215 NDMVVYTSDGTTLFETVPRDIN-----FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 G E + + + + S G A+ Sbjct: 669 QVSTATVGPGAVTMEEIAGKLTSGTVVGSVIQDGDGYRLRLHSTAGAELTVSITGGAMAS 728 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G ++A L + + L +E + +S ++ Sbjct: 729 GSLEASLGMNKVERVSASVIPEGSGYRLRVVQAENKEVFLSSTLDISNNNLLTELEMKPA 788 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + R + + + NK + Sbjct: 789 ATRTAGTISVRADLMSGPEKMGRGAVQWNADLNGYYISEGDNSTALAMADAMGNKRAMQS 848 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 N +L EY +I + ++ S + + ++ GVNL EE+S Sbjct: 849 AGGLYAGNYSLSEYGAATISLVTRDAEHSSKQLEYQTALSQSLDFQNTSFSGVNLDEEVS 908 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I +Q+Y+ + K+I +ML+TL + Sbjct: 909 AMIDFQQAYSATAKVITVLQEMLETLTAMI 938 >gi|251772404|gb|EES52971.1| flagellar hook-associated protein FlgK [Leptospirillum ferrodiazotrophum] Length = 559 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 45/410 (10%), Positives = 116/410 (28%), Gaps = 13/410 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49 MS ++ V N Q + N+ N + Y R M Sbjct: 1 MSGIIGVMNIGQTGIEANEAALKTAGHNLSNVNTPGYSRERVMLEQHVPDMGHPGMMGAG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V R + + + +G + + + +S+ + Sbjct: 61 VDAARIRRVVNHFLENQSTRQKTTLGFWESSRISLGEIDSYYFHAQSE-GLSRDLSRFFN 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E+ + + ++ T+I + Q+F+ + R +IE +++ + ++ Sbjct: 120 HWETVANHPADRAARATLITYGHNLGQDFHQMTALYAESRNRLGHQIEDQVTKINARIAR 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + V+N +I D + FLD+R + ++S + + + ++ G F Sbjct: 180 IAVLNHSILAARGRGEDPNTFLDERARIAGEVSRLTNAHFFHDKDGSLNLHI-GGQAAFS 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + V G + + +RD + Q+ Sbjct: 239 EQEVGHMAAIFDPVHDRYRITFAPPSHSGPPIDITDRVKGGVLGGYIDVRDHKIKSMQHH 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A + S + G+ ++ +G + + Sbjct: 299 LDLLAFQVANSVNSIHSRGYGLSGQTGVNFFKPTVEVVRTAGEGSGGVVANVEDASAVLP 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + +++ K+ + + + + Sbjct: 359 KILVESDAAGVRVYSAKDHLLIGSGVVKDGVATITAGGYALRVMAPKKGS 408 Score = 87.0 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 39/411 (9%), Positives = 100/411 (24%), Gaps = 18/411 (4%) Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS---EDILGKTVIDNAE 132 E + + ++ + ++ + ++ + Sbjct: 155 YAESRNRLGHQIEDQVTKINARIARIAVLNHSILAARGRGEDPNTFLDERARIAGEVSRL 214 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 F+ + E E+ ++ + + D D Sbjct: 215 TNAHFFHDKDGSLNLHIGGQAAFSEQEVGHMAAIFDPVHDRYRITFAPPSHSGPPIDITD 274 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 + + I + + + L V +N Y ++ ++ Sbjct: 275 RV--KGGVLGGYIDVRDHKIKSMQHHLDL-----LAFQVANSVNSIHSRGYGLSGQTGVN 327 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 F V G + + + I RV + Sbjct: 328 FFKPTVEVVRTAGEGSGGVVANVEDASAVLPKILVESDAAGVRVYSAKDHLLIGSGVVKD 387 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----NPSFLRDGGSVSKKFLWNVKN 367 V + + S T+ + + L + + Sbjct: 388 GVATITAGGYALRVMAPKKGSESYTVSGGTHVAGTALHLDVTNLSADDVAVADSPVSPGS 447 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 G + K+ F G + ++ EY + + + + Sbjct: 448 NEGDNANAHQIFYLSQKHLRFP---GEDEPASIYEYYASGVAKIGAWARQARLNDKAQVA 504 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + GV++ E + +I+ E++Y S LI +++L TL+ Sbjct: 505 ISQSLETQRLAVSGVSIANESAKIIRFEKAYQASANLIQMVNRLLDTLVRL 555 >gi|73539456|ref|YP_299823.1| flagellar hook-associated protein FlgK [Ralstonia eutropha JMP134] gi|72122793|gb|AAZ64979.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 631 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 46/371 (12%), Positives = 125/371 (33%), Gaps = 14/371 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++F+ + N A + N NA + Y R++T+ + T Sbjct: 2 SLFSIGLSGLNTAQNALTTTSHNFANAATEGYSRQNTIVASAGGQYTSQGFFGMGSNTTT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 L SA + + AD + K ++++ Sbjct: 62 VARVYDQFLTGQLRGAQSAGSALSTYSDQIGQIDNLLADQ--KGGLAPLMQKFFSAVQAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + ++ + +V +++ +++++ +++I + + + +++ +N Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQSGVNEQIGTAVDQINSYSKQISNLN 179 Query: 175 DAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 I A +D LDQRD + ++++++G +V++ V+ +G L Sbjct: 180 GEIAKLKALSGGQPPNDLLDQRDQAVSELTKLVGAKVVVQDGGTYNVFIGNGQPLVMGNE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + G + ++ A+ G + LLQ R + QN + Sbjct: 240 SYDLKAVASAADPGRTVVAYTVPGGGLRESESGAITGGSLGGLLQFRSETLDSAQNSIGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + +F+++ + + G + S I ++ Sbjct: 300 LSLAIGQAFNDQHKLGMDMNGDIGTDMFKLGSATTLSNANNTSSAIAQATVTDASALTTS 359 Query: 353 DGGSVSKKFLW 363 D + Sbjct: 360 DYTLEFDGTNY 370 Score = 95.1 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 25/374 (6%), Positives = 82/374 (21%), Gaps = 6/374 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 +Y+ ++ + + + + + Sbjct: 258 AYTVPGGGLRESESGAITGGSLGGLLQFRSETLDSAQNSIGRLSLAIGQAFNDQHKLGMD 317 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + + + ++ + ++ + + L Sbjct: 318 MNGDIGTDMFKLGSATTLSNANNTSSAIAQATVTDASALTTSDYTLEFDGTNYKLTRMSD 377 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + + I Sbjct: 378 KHVETFAPTDPIQFDGFSVQLNGTPSAHDSFLIQPTRNAAASFDMAISDPAKIAAAAPAG 437 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + S + + + + + P + Sbjct: 438 VDAGSTNQGSGTAALGSVAPGFTPMTGKIIATYDGTGYTFTDASGAAITPDSTAANGANT 497 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA------GINTNVTLLEYARN 406 D F + AG + + N +A I + + Sbjct: 498 DYTFGGLTFTFGGTPKAGDSFTLGSNAGAVKNNGNALALAKLQSAKTIGGVSSFNDAYAQ 557 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + I+ + + GVN+ EE +++ +Q Y + ++I Sbjct: 558 LVNDVGTRAKSVQIASTSQDSITAQITAAQQSVSGVNMDEETVSMLRFQQMYQANARVIQ 617 Query: 467 FTDKMLQTLLEGVK 480 + T++ + Sbjct: 618 AASTLFDTIIGIGR 631 >gi|254239444|ref|ZP_04932766.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa 2192] gi|126192822|gb|EAZ56885.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa 2192] Length = 682 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 59/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + +S + + ++ + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S + V+ AE + + FNT ++ K + ++++ S + + Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D +D RD ++K+SE+IG++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + N V G++ LL R+S + N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L + +++ + G + I D D + + N + Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D + + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTSFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 44/444 (9%), Positives = 92/444 (20%), Gaps = 13/444 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 R + V S + + +L Q L + ++ Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 +L + L A+ + + + Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L+ L + + F D V + + Sbjct: 365 RLDFDGTSFTARRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFNLTLDQLPAAGDRFTL 424 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + T ++ N + G + + Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPTVLQGA 484 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + D L + + N + ++ Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWSY-VDKDGNALTGSPTLTSGNTNTVRMAFTD 543 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 Y S + K + L + NT Sbjct: 544 PSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-----NLLALQTKPTVGGTDNT 598 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T E + + + S V +S + GV+L EE + LI+ +Q Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 Y S ++I + TL+ + Sbjct: 659 YYGASAQVIQVARTLFDTLIGAFR 682 >gi|103488393|ref|YP_617954.1| flagellar hook-associated protein [Sphingopyxis alaskensis RB2256] gi|98978470|gb|ABF54621.1| Flagellar hook-associated protein [Sphingopyxis alaskensis RB2256] Length = 441 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 61/491 (12%), Positives = 137/491 (27%), Gaps = 64/491 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + + + S+ ++I NI NA Y RR SP Sbjct: 1 MSDLLGIGYSGLKAYSRALSTIGDNIANAQTPGYARRRLEMMEAVGGGNSIFYRGNTSPG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + S + + E +D+ N +++L Sbjct: 61 GVDIRGLDRSVDQWLIADSRLTSGDAERAAARLDWLGKVEGALSDET--NGIKTGLTRLF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + + + + L + + +++ F T+A ++ + + L Sbjct: 119 TTADQLTADPANRTLRAQFLQSVDDIASGFRTAADQLAGMSDGISGAATSAVGAFNANLE 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L +N ++ + LD+RD LL K+S G+S NN + + + L Sbjct: 179 ALEQINIGLRKARPGSTNEASLLDERDRLLDKLSSQAGVSASFDNNGAVTLRAAGPGDLL 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + G ++ G + L + + V + Sbjct: 239 VGGGV---VTPIAVTAAPDGRLSYSVGGAPLAIAT------GSLAGLAEGANHVADQ-RA 288 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD MA + ++ PG + G + + N Sbjct: 289 ALDTMAADFAAQLNAAHQAGADANGNPGQPLFTGASAATLTAAPLTPDQVAAADASSGNG 348 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + L + + Sbjct: 349 NML--------------------------------------AFGAMRGANDPEARWSGLM 370 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + H + + + + ++L E + L++ +Q+Y+ + + I Sbjct: 371 ATQAQTVAAARAHHAAATTRADAAAAARDGVSQIDLDTEAAELLRYQQAYSAAARTIQVA 430 Query: 469 DKMLQTLLEGV 479 + +QTLL + Sbjct: 431 RETMQTLLSSL 441 >gi|2494530|sp|Q56326|FLGE_TREPH RecName: Full=Flagellar hook protein flgE gi|439981|gb|AAA73467.1| flagellar hook polypeptide [Treponema phagedenis] Length = 463 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 44/491 (8%), Positives = 117/491 (23%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56 ++ + N + I N+ N + + R R Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60 Query: 57 -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + S Sbjct: 61 GVNPKEVGLGVMVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTTAGAFGV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + + Q ++ + + + ++I+ + + + Sbjct: 121 DRDGTLVNPANGMRVQGWMAE-DIEGQQIINTSDQTEDLIIPIGQKIDAKATTDVAYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + +Q D+L + + + + + S Sbjct: 180 LDKRLPELPEG----------ANQADILRSTWATDFNVYDTFGEQHKLQMVFSRVPGTNN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +N + N + DG + + P Q Sbjct: 230 QWLATVNVDPENQAGTETRVGIGTTDGTENTFIVSFDNYGHLASVTDTAGNVTAPAGQ-- 287 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 VL+ + + P + I Q+ + Sbjct: 288 ------VLVQASYNVVGANPDEGGAPTRHTFNINLGEIGTSRNTI-------TQFAERST 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + ++ +AG L + N Sbjct: 335 TKAYQQDGYAMGYLENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGEN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ + + + V+L ++ + +I ++ + K I +D Sbjct: 393 YIQSNNSGIANITVSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD 452 Query: 470 KMLQTLLEGVK 480 ML+T+L + Sbjct: 453 TMLETVLNLKR 463 >gi|119899021|ref|YP_934234.1| flagellar hook-filament junction protein 1 [Azoarcus sp. BH72] gi|119671434|emb|CAL95347.1| flagellar hook-filament junction protein 1 [Azoarcus sp. BH72] Length = 663 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 147/425 (34%), Gaps = 15/425 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N N A Q + NI NA + Y R+ + T + + V Sbjct: 1 MAGLLNIGLTGLNAAQAQLLTTGHNITNAGVEGYHRQTVIQTSNTPQFTGVGFFGQGTQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + S+ + + S + + AD + + + ++ Sbjct: 61 SAVTRSYSQYLENQVLTSSARLSEFTAYNSQISQINNLLAD--STSGLSPVMEGFFAGVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +++I +A+ +V F T + +IR + EI ++ + F + Sbjct: 119 EMASNPTSVAARQSLISSAQALVSRFQTMDARLAEIRQGTEGEIASTVTQINMFAGAIAE 178 Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I + A+D LDQRD L+ ++++++ ++T+ N+ M V+ G L Sbjct: 179 MNQRIAQAQVAGPSVAANDLLDQRDQLVAELNKLVKVNTVTENDGSMSVFMGSGQGLVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++ + + + + + + G + LL R + + QN L Sbjct: 239 GTVNQLAAVRDANDPQRSAIALMAENGAPTVLPENLLSGGTLGGLLGFRRESLDVAQNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A + +F+ + + + + V G + +I Q + Sbjct: 299 GLIAVGIAEAFNAQHQLGVDLDGVLGGQFFSLPDPALKPAITSATVSIENYAQLTAADYM 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L G+ ++ + Y N P A T L++ RN+ Sbjct: 359 LEWDGAAYSMRAVGGASIPLTLQVDGSYSGGGINIAISTPPPADFPTTGLLIQPTRNAAA 418 Query: 410 WLEKN 414 + Sbjct: 419 NIGVA 423 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 61/251 (24%), Gaps = 2/251 (0%) Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +I + + + G + + ++ + Sbjct: 415 NAAANIGVAITDPRKIAAGDPVSVAPGNYTGAVTDRIKGLKTLSVDGIDANADGKADFSP 474 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + S ++ + D+ + +Y + Sbjct: 475 MTLSFAANTFTASAGTIERYDTATGTWVAGGAYNPATDSTGVRFRVTDGTAPNEYAFEFT 534 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + S AG D N + G T + Sbjct: 535 AVGAWASGESMVF--SPTAAGVADNRNAVALGALQTAKTMLNGGSGATATFQSVYAQMVT 592 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + +++ GVNL EE + L++ + +Y + +++ Sbjct: 593 QVGNKTREVQVNQAAQESLLTQATDARDALSGVNLDEEAANLVRYQMAYQSAARVMNVAQ 652 Query: 470 KMLQTLLEGVK 480 + LL + Sbjct: 653 TLFDELLAIGR 663 >gi|42528268|ref|NP_973366.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] gi|4426943|gb|AAD20617.1| flagellar hook protein FlgE [Treponema denticola] gi|41819538|gb|AAS13285.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] Length = 463 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 45/491 (9%), Positives = 123/491 (25%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ N + I N+ N + + R R + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E N + + + + E ++ + + + ++++ + + + Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EAEGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + ++ +L S + +++ + + Sbjct: 180 LDKRLPELPEG----------ANRAQILESTWSTEFKVYDSFGEAHELQIDFARVPGEVN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +N + N+ + DGV S G + ++ +V Sbjct: 230 AWRATVNVDPTNADATATRVGIGTTDGVQNSF-IVRFDNNGHLASVTDTAGNVTSPAGQV 288 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +++ ++G+ + P D I Q+ + Sbjct: 289 LVQISYNVVGANP-------DEAGAPTRHTFDVNLGEIGTSKNTI-------TQFSDKST 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + + +AG L + +N Sbjct: 335 TKAYEQDGYTLGYLENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ V + V+L ++ +I ++ + K I +D Sbjct: 393 YVQSNNSGIANVSTSGTVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD 452 Query: 470 KMLQTLLEGVK 480 ML+T+L + Sbjct: 453 TMLETVLNLKR 463 >gi|90411011|ref|ZP_01219025.1| flagellar hook-associated protein [Photobacterium profundum 3TCK] gi|90328224|gb|EAS44535.1| flagellar hook-associated protein [Photobacterium profundum 3TCK] Length = 626 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 53/338 (15%), Positives = 116/338 (34%), Gaps = 15/338 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V Sbjct: 3 FDLLNMGSQGLLTAQRQLNTTSHNINNVNTEGYSRQSVVQQTNDPIWWGGSQHGTGVHAA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + + + M A+ + +++ D++++ Sbjct: 63 EVRRGYDQFATNELNLTTTNLSYATEREGQLGRLDNMLAN--SSKKIPEDMNQWHDAVKA 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K VI+ A+ V N S + K +++A++ + ++ + EL V Sbjct: 121 MADSPNDLGSRKVVIEKAKLVASGLNDSYGTLAKQKSEANEVLSGTLNRVNDIGRELVEV 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + A+ AS D +D +D+ L+ ++S+ ++ +NN V G TL Sbjct: 181 HKALVKTPASGAD-NDLMDRHQNLINELSQYTKVTVTPKNNETFNVMIGSGHTLVSGTES 239 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 I + GK+ AL Q RD + +++ + Sbjct: 240 SELRMINGKPDPQQTQLAIVEGKALKPIRNDDI--GGKLAALFQYRDETLSQTMDEMGRI 297 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 A S +E + G + + D + Sbjct: 298 AIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDPASAAA 335 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 98/359 (27%), Gaps = 13/359 (3%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 D ++ F + + + + ++ S+ +N + + Sbjct: 271 DIGGKLAALFQYRDETLSQTMDEMGRIAIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDP 330 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 R + + + + + + + F+ + + +V Sbjct: 331 ASAAARARVPAGSTADLKVYI----EDINQLKVGEYGLTFDGSQHTLTSPDGSRQSVVPS 386 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQNQLDEMARVLIGSFS 302 NP + S + G+ A+ RD + + + Sbjct: 387 GNPAAFSVDGLRIQMDSPIGIGERIAIRPTRDGAGNIKALLDDPAKIAAQSYLSSATKAN 446 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSK 359 +A N+ P F D + I PQ + ++S Sbjct: 447 GNADLAINAAGGPNEFQVAVSPDASQFAVLDMKGNILQAPQVYPPSGEVNVGGTRFTLSS 506 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + + + ++++ + ++ + Sbjct: 507 GAMGGDVFAVNLNASDGDNGNLIKMQDLQSQKIMNDGRSSVIDVYEGLNTEMGVQKASAS 566 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L V + + GVN+ EE + ++K +Q+Y S++++ + TLL Sbjct: 567 RLKEVGLVEKDAAQSRVAEIAGVNMDEEAANMMKFQQAYMASSRIMSVANDTFDTLLNI 625 >gi|192361114|ref|YP_001982394.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus Ueda107] gi|190687279|gb|ACE84957.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus Ueda107] Length = 923 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 54/445 (12%), Positives = 143/445 (32%), Gaps = 26/445 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVT 51 + + + A + + + NI NA+ Y R+ + + VT Sbjct: 1 MSGILSNAISGLQASQNALRTAGHNISNANTTGYTRQQVVYSTRPEQSAGAAGFVGSGVT 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + L +S Q + + + AD + + + +L Sbjct: 61 TTSIERIVNDFVTAQLRLDTSTYNQLNTYNVNISKIDKLFADT--STGLSGGLQTFFAAL 118 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ + + + + ++ + FN+ + + I + E++ S + + Sbjct: 119 QNGANDPASTPARQLIVTEVNNLSVRFNSLYQRLADIEKSINGEVKTITSQMTALAKSIA 178 Query: 172 VVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N +I + + +D +D+RD L+++S ++ I + + + D+ V+ +G L Sbjct: 179 ELNQSIAEKRASGQGNMPNDLMDKRDEALRQLSGLVSIQVVNQGDGDVNVFIGNGQPLIV 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + I + +++ S + G+I LL R+ V+ QN+ Sbjct: 239 GSQVSSFSVTNDGK--------IQLVSNGSAADITSQISGGQIGGLLSYRNEVLYPAQNE 290 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +A + F++ + + G + I LD + + + P + + Sbjct: 291 LGRVALAISDQFNKMQQQGLDLDGDYGQPLFSDINTLDAMSSRIVHGSNNALPY---DRN 347 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 V+ + + + + + + T+ Sbjct: 348 LTLRIDDVNALGVNDYRFEIIPNTSNYLITRVGDNSVVAQGALTGAYPQTISFEGLTLSL 407 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISE 434 + + ++ I Sbjct: 408 NSGSFQGGDSFVLQPTKYAARDIKS 432 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/401 (10%), Positives = 103/401 (25%), Gaps = 3/401 (0%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + + + +L S S +S L + + + Sbjct: 526 TSNAVFTSDMGETLVVGKGSRLGLPAGREPQTLASLSNTMSNGYLAEQLRFTITDPTTGS 585 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 ++ A A + + T N + L L Sbjct: 586 VSTKTLTTVPGASAAQTAAQISTIPGVTARAFTTANITNIQLDNADFAPPTQLYVNGEPL 645 Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + N + + + L + + + N + + V+S + + G Sbjct: 646 IEYDAYGTGFQGDVPNPNTMGEAAFNDYLAQRINANPNLQTLGLRAVSSTNP---VTGAA 702 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 S+ I+ + +S + + L G+ + G Sbjct: 703 ELQLVASSGVDLDIRLVASGTNSSSIDVNDGTGNPSVRLAGADTGAGEQQGIVVGGRIDI 762 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 L+ + + + + + + N Sbjct: 763 TMGNGVRLNTSPSNSPLFGDSTASDFALSSYIGYQVYISGQPKAGDTFTVGFNTNGTNDN 822 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 ++ + N ++ + + + S S S+ + Sbjct: 823 RNALALVGLETAKTMQNGTMSFGDAYGKLVEEIGTRSSLSKINTEASKSLLEQTQSMRDG 882 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVNL EE + LI+ +Q Y + ++I ++ TLL + Sbjct: 883 ISGVNLDEEAADLIRFQQLYQANARVITVARELFDTLLNAL 923 >gi|254464969|ref|ZP_05078380.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] gi|206685877|gb|EDZ46359.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] Length = 435 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 60/488 (12%), Positives = 136/488 (27%), Gaps = 61/488 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + + + ASI NI N+ + Y R T + S + Sbjct: 1 MTISSSLNAGVSGLSANASRLASISDNIANSSTRGYKRVQTDFHSMVLSGSGGTYSAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYISKLRDSLE 112 R+ N + D+ L + ++A + + + + R Sbjct: 61 RTTNVRLIDERGPLVSTNNATDLAVRGRGMLPVASITEVEAGGSPSMMLTSTGSFRTDSS 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y S +L + +A ++ IR D ++ + + Sbjct: 121 GYLSTESGLVLMGWPAQADGTLPDVARDTADALEPIRIDLNRLSAEPTTEISLT----AN 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + A AS + D + + SE + I+ P Sbjct: 177 LPAAETDPGASGDPVEQVVQYFDNMGR--SEELTITYTPS----------------VATP 218 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + G + SA G ++++ + + Sbjct: 219 PATSGTNEWTMQIVDSATGATVIGEYTLTFDDSAASAGTLQSVATLTGGAYDATAGSVTI 278 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + G+ Q Sbjct: 279 NVAGGPVEIN-----------------------------IGVIGEQNGMSQLGDEFVPGT 309 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + + ++I Y K P+A ++ + +S + Sbjct: 310 TEKDGTAVGSFVSVEVNASGEVIASYDSGDTKVIYKVPLADVSNINGMQAL--DSQTYKP 367 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + L + I V++ EL+ +IK +++Y+ + K+I D+ML Sbjct: 368 TDDSGAFYLWDAGEGPTGEILGYAQEESAVDVATELTDMIKTQRAYSSNAKVIQTVDEML 427 Query: 473 QTLLEGVK 480 Q + Sbjct: 428 QETTNIKR 435 >gi|116049009|ref|YP_792189.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|296390556|ref|ZP_06880031.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAb1] gi|313106035|ref|ZP_07792294.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] gi|115584230|gb|ABJ10245.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|310878796|gb|EFQ37390.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] Length = 462 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 47/478 (9%), Positives = 111/478 (23%), Gaps = 23/478 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62 FN + AS NI NA + + + + + + Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D I + + + + + + Sbjct: 62 SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ T +L++ + + + + + Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPQATSSIQQSYNLNST 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240 K D D S +GI N++ M + P + ++ Sbjct: 166 LKPPTVTPFDPSDAATYNSSSSLGIYDSQGNSHTMSQFFIKNEPDPNATPPIPENSWTMK 225 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +P + + ++ ++A + + Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVTFDASGQMTSVRAPDGSTSGPGFSIDATTNVIQFSPATG 285 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + GIS + QY + + Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGAASGISFDMRKTTQYSTAFAQSNPIQDGYTT 345 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +K +A L + W++ S Sbjct: 346 GQLAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSAESGEPA 403 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V++ EL LI +++Y + K I D + QT++ Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461 >gi|188534164|ref|YP_001907961.1| flagellar hook-associated protein FlgK [Erwinia tasmaniensis Et1/99] gi|188029206|emb|CAO97078.1| Flagellar hook-filament junction protein 1 [Erwinia tasmaniensis Et1/99] Length = 551 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 78/553 (14%), Positives = 168/553 (30%), Gaps = 79/553 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A N AS + NI N Y R+ T+ + +V Sbjct: 1 MANLINTAMTGLNAASAALNTTSNNITNYAVTGYSRQTTVLAQNSSTLSGSNYYGNGASV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 E K L A S+ + + M N+ + I SL+ Sbjct: 61 SNVYREYDQFISKQLLAASTQSSAISTQAGQMSNIDDML--SGTTNTLSTNIQDFFKSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N + + V+ AE +V + + + + ++ + + + ++ Sbjct: 119 TLSSNAGDSSSRQAVLGKAEGLVNQLKVTDTYLTNLDNSLNVSVKSTVDQVNNYAKQIAN 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN I + ++ +D LDQRD L+ ++++++G++ ++ + +G +L + Sbjct: 179 VNQQITKLKGVGAGNEPNDLLDQRDQLVSQLNKLVGVNVSQQDGGSFNISVGNGISLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +S + + + S V G + LL R + +NQ Sbjct: 239 DSYNQLAAVPSSADPGRTTIASVDSVTGAKTELPESLVTTGSLGGLLAFR-KDLDGVRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ----------------- 332 + ++A L SF+ + +S G + + Sbjct: 298 VGQLALALGSSFNTQHEAGLDSNGDKGEAFFNLGSPVATSNGNNKGDASLTVAYDADKID 357 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + + +R + K + D + + D Sbjct: 358 NVKASNYKMTWDGGSWNVVRLSDNAQVKDVDASTPGTVKFDGLTITVGASGTLQNDDSYT 417 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN-------------- 438 + + N + + S ++ V + ++ + Sbjct: 418 IKPVTNVISGMSVNITDEAKLATAGSTGGASNNENVKSLLALQTKSLINGTSTLTQAYAG 477 Query: 439 --------------------------------TVGVNLQEELSFLIKVEQSYNISNKLIM 466 GVNL EE S L + +Q Y + K++ Sbjct: 478 LVADVGNKTSTLETTSTTQTAVVTQLTKQQQSVSGVNLDEEYSNLARYQQYYMANAKVLQ 537 Query: 467 FTDKMLQTLLEGV 479 + Q+LL V Sbjct: 538 TASTIFQSLLTAV 550 >gi|195941912|ref|ZP_03087294.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 80a] gi|225549791|ref|ZP_03770755.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 118a] gi|225369599|gb|EEG99048.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 118a] gi|312149645|gb|ADQ29716.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi N40] Length = 627 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSVELIDTVINKM 625 >gi|301051132|ref|ZP_07197963.1| flagellar hook-associated protein FlgK [Escherichia coli MS 185-1] gi|300297216|gb|EFJ53601.1| flagellar hook-associated protein FlgK [Escherichia coli MS 185-1] Length = 425 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 56/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|224532827|ref|ZP_03673442.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi WI91-23] gi|224512216|gb|EEF82602.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi WI91-23] Length = 627 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTDKLTPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSVELIDTVINKM 625 >gi|119952979|ref|YP_945188.1| flagellar hook-associated protein FlgK [Borrelia turicatae 91E135] gi|119861750|gb|AAX17518.1| flagellar hook-associated protein 1 [Borrelia turicatae 91E135] Length = 627 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 60/419 (14%), Positives = 149/419 (35%), Gaps = 28/419 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + +I N+ N Y R+ + Sbjct: 3 STFSGIEIGKKSLFAHKDAMNTIGHNLTNTSKPGYSRQRVIMKTEIPIYAPQLNRANKVG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + ++ D + S +G F +L E + ++ S + Sbjct: 63 QLGQGIMVQSIERVRDDLLDIKIAEESHRLGYWSSKDKFISLLENVY-NEPEEQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + DS + SK +++ + + + +++I A+ E+++ + Sbjct: 122 NDFWDSWQDLSKQPQGLAERNIILERGQSFAEVVSNRFHSLKRIYTMANDEVKITTEEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A K +D +D+RD+++ K+S +I IS + + + + +G Sbjct: 182 NYLRNISDLNRQIAKAIAMKDQPNDLMDERDLIVDKLSNLISISIENKRDPNEFLIYVEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N ++ +G + N GK+ AL+ +RD+ + Sbjct: 242 KHLIQGAIANEFILEAANGPTGTKWNVLWNNGEPANINT------GKLGALINVRDNEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISETICV 340 N++D MA + +E + G D L + G + V Sbjct: 296 NEINEIDNMAINITELVNEVHVSGHGLDQKNGRIFFDQEYKLTDERGRYDSNGDGQFDSV 355 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + ++ + + ++ + + + + Y + + + + N+ VT Sbjct: 356 HIFKINSTNEIFPEENLGFSGILKFQAINKNDFIEIPYNTTDTVQDVINKINNSNSQVT 414 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 45/381 (11%), Positives = 105/381 (27%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 N + + N E+ +I A I Sbjct: 255 LEAANGPTGTKWNVLWNN--GEPANINTGKLGALINVRDNEIKNEINEIDNMA-INITEL 311 Query: 160 ISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + L N I F + D D I I++ + Sbjct: 312 VNEVHVSGHGLDQKNGRIFFDQEYKLTDERGRYDSNGDGQFDSVHIFKINSTNEIFPEEN 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + S D N+ + + + + +A K +IKA+ + Sbjct: 372 LGFSGILKFQAINKNDFIEIPYNTTDTVQDVINKINNSNSQVTARINAEGKFEIKAIKEE 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + +++ L + + + + Sbjct: 432 ENDSAIFRIRYIEDSGLFLTTYTGILNASGT---EGAYNYQDVNTTNQLINTVSYSIAPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + + S + N A D + + I N Sbjct: 489 KNPAAWLKVSREIAEDPSKIASGIKTPTNNAPIGDNK----AALRIASFVNSQIMIGKNA 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + + + + ++++ + GVN EEL+ +I+ +QS+ Sbjct: 545 TLNDYFANTASNIAIKGQTAEITKNSQEQILKNLTDLRLSISGVNKDEELANMIEFQQSF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSAELIDTIINKM 625 >gi|313620048|gb|EFR91563.1| flagellar hook-associated protein FlgK [Listeria innocua FSL S4-378] Length = 506 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIAADTDAAIQDLNTLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL +S GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVGGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ + W + + + Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATFTADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|256829395|ref|YP_003158123.1| hypothetical protein Dbac_1614 [Desulfomicrobium baculatum DSM 4028] gi|256578571|gb|ACU89707.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 513 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 55/516 (10%), Positives = 131/516 (25%), Gaps = 39/516 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56 MS+ + + A I NI N + + + +V Q Sbjct: 1 MSISSSLYIGTTGIMAQQKNMAVISDNIANVSTVGFKSSHMIFNTLMSQQMGSASVSNQV 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESY 114 + + + A+ + +S R E Y Sbjct: 61 GQGVGVSSILYDMSLGALEPTNTATDISISGKGFFIVSPNGSSDQHYTRAGNFRFDAEGY 120 Query: 115 SKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ +IL + + ++ + IR D +S Sbjct: 121 LRDPQGNILQGYRMPAESILDTAPVIPPAASAPITDIRLDMQDGGGP-VSEPEATTEMRM 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG------- 224 ++N + S F D E + + + + G Sbjct: 180 MINLDSSSQERSTSTTSPFTALFDSWDATQPEPLDAGAYSYQSAMKIYDSDGGAHEVRAY 239 Query: 225 ----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + +E + + T +++ + V+ + + G++ + Sbjct: 240 FDPVQDGASVPSGNRMWEFLVTIPPTQDASGLDTKKGVLMTGTLTFTASGELLNMSAFEG 299 Query: 281 SVVPIFQNQLDEM----------------ARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 S + + G Sbjct: 300 SSDDKNSWVPVNLSEDGYPVLNVNLVGAEPISSALDMGLRSNSGWALPAGVNTLADLGTA 359 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D Q I + S S L + ++ ++ L+ ++ + N+ Sbjct: 360 ISDLPSLQNADRQILSITNFNSGSSTLYQSQNGYERGFLQSVSVDTAGVLVGYFSNGQNQ 419 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 P+A L N S + + + + S V+L Sbjct: 420 GLYKIPMADFINPQGLFREGGNLFS--ATKDSGAVSVGWAGEGRLGSVITSSLENSNVDL 477 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E +I ++ ++ ++K+I D+++QT ++ + Sbjct: 478 ATEFVNMIITQKGFDANSKVITTGDQVVQTAIQMKR 513 >gi|15596283|ref|NP_249777.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PAO1] gi|218892950|ref|YP_002441819.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa LESB58] gi|9947002|gb|AAG04475.1|AE004539_17 flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa PAO1] gi|218773178|emb|CAW28990.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa LESB58] Length = 683 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + + AD + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++N S + V+ A+ + + FNT ++ K + ++++ S + + Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D LD RD ++K+SE++G++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + + N V G++ LL RD+V+ N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + +++ + G + I D D + + N + Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 112/434 (25%), Gaps = 20/434 (4%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + + + +M + + +KL +++ + LG Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + + + F K + +++ + +N + Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242 + D +++ + + V TL + F + Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429 Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 T ++ + G + + G I + + Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVDGPSPIDPAVLQNAFGANG 489 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349 + + L D D + S + Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406 + + + + L+ D I ++ N N + +T T + Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGIADNRNALNLNALQTKPTVGGTDSTGSTYNDAYGG 609 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + SQ V +S + GV+L EE + LI+ +Q Y+ S ++I Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669 Query: 467 FTDKMLQTLLEGVK 480 + TL+ + Sbjct: 670 VARSLFDTLIGAFR 683 >gi|313624689|gb|EFR94646.1| flagellar hook-associated protein FlgK [Listeria innocua FSL J1-023] Length = 506 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIVADTDAAIQDLNTLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL +S GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQTNPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ + W + + + Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|254234222|ref|ZP_04927545.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa C3719] gi|126166153|gb|EAZ51664.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa C3719] Length = 683 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + + AD + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++N S + V+ A+ + + FNT ++ K + ++++ S + + Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D LD RD ++K+SE++G++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + + N V G++ LL RD+V+ N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + +++ + G + I D D + + N + Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 20/434 (4%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + + + +M + + +KL +++ + LG Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + + + F K + +++ + +N + Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242 + D +++ + + V TL + F + Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429 Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 T ++ + G + + G I + + Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVGGPSPIDPAVLQNAFGANG 489 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349 + + L D D + S + Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406 + + + + L+ D I+ ++ N N + +T T + Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAYGG 609 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + SQ V +S + GV+L EE + LI+ +Q Y+ S ++I Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669 Query: 467 FTDKMLQTLLEGVK 480 + TL+ + Sbjct: 670 VARSLFDTLIGAFR 683 >gi|15596277|ref|NP_249771.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|107100525|ref|ZP_01364443.1| hypothetical protein PaerPA_01001550 [Pseudomonas aeruginosa PACS2] gi|218892956|ref|YP_002441825.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] gi|254234216|ref|ZP_04927539.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|254239438|ref|ZP_04932760.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|9946996|gb|AAG04469.1|AE004539_11 flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|126166147|gb|EAZ51658.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|126192816|gb|EAZ56879.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|218773184|emb|CAW28996.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] Length = 462 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 47/478 (9%), Positives = 112/478 (23%), Gaps = 23/478 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62 FN + AS NI NA + + + + + + Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D I + + + + + + Sbjct: 62 SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ T +L++ + + + + + Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPQATSSIQQSYNLNST 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240 K D D S +GI N++ M + P + ++ Sbjct: 166 LKPPTVTPFDPSDAATYNSSSSLGIYDSQGNSHTMSQFFIKNEPDPNATPPIPENSWTMK 225 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +P + + ++ ++A + + Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVTFDASGQMTSVRAPDGSTSGPGFSIDATTNVIQFSPATG 285 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + GIS + QY + + Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGAASGISFDMRKTTQYSTAFAQSNPIQDGYTT 345 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +K +A L + W++ + S Sbjct: 346 GQLAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSSESGEPA 403 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V++ EL LI +++Y + K I D + QT++ Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461 >gi|283833624|ref|ZP_06353365.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC 29220] gi|291071307|gb|EFE09416.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC 29220] Length = 550 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 58/406 (14%), Positives = 129/406 (31%), Gaps = 14/406 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L A + + + + + + + + SL+ Sbjct: 61 SGVQREYDSFITNQLRAAQNQSSGLTTRYEQMSKIDNLLSSKTSSI--STSMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I+ + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFRTTDQYLRDQDKQVNTAIKASVDQINNYSKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ V++ V ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNVTMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + LL R + +N L Sbjct: 239 SNARQLAAVPSSDDPSRTTVAYVDGVAGAVEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G D + S+ Sbjct: 299 GQLALAFADAFNTQHKEGFDANGDKGGNFFDIGSPAVLSNTKNQGTGSLDVKMTDSSAVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 D V W V LA + G Sbjct: 359 ATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGMEITVGAGA 404 >gi|325474542|gb|EGC77728.1| flagellar hook protein FlgE [Treponema denticola F0402] Length = 463 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 45/491 (9%), Positives = 123/491 (25%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ N + I N+ N + + R R + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E N + + + + E ++ + + + ++++ + + + Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EADGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + ++ +L S + +++ + + Sbjct: 180 LDKRLPELPEG----------ANRAQILESTWSTEFKVYDSFGEAHELQIDFARVPGEVN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +N + N+ + DGV S G + ++ +V Sbjct: 230 AWQATVNVDPTNADATATRVGIGTTDGVQNSF-IVRFDNNGHLASVTDTAGNVTSPAGQV 288 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +++ ++G+ + P D I Q+ + Sbjct: 289 LVQISYNVVGANP-------DEAGAPTRHTFDVNLGEIGTSKNTI-------TQFSDKST 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + + +AG L + +N Sbjct: 335 TKAYEQDGYTLGYLENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ V + V+L ++ +I ++ + K I +D Sbjct: 393 YVQSNNSGIANVSTSGTVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD 452 Query: 470 KMLQTLLEGVK 480 ML+T+L + Sbjct: 453 TMLETVLNLKR 463 >gi|15594526|ref|NP_212315.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi B31] gi|216264299|ref|ZP_03436291.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 156a] gi|221217529|ref|ZP_03588999.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 72a] gi|223889273|ref|ZP_03623861.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 64b] gi|226321499|ref|ZP_03797025.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi Bol26] gi|3915691|sp|P70859|FLGK_BORBU RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|2688082|gb|AAC66579.1| flagellar hook-associated protein (flgK) [Borrelia burgdorferi B31] gi|215980772|gb|EEC21579.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 156a] gi|221192592|gb|EEE18809.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 72a] gi|223885306|gb|EEF56408.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 64b] gi|226232688|gb|EEH31441.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi Bol26] gi|312148243|gb|ADQ30902.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi JD1] Length = 627 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSVELIDTVINKM 625 >gi|171059406|ref|YP_001791755.1| flagellar hook-associated protein FlgK [Leptothrix cholodnii SP-6] gi|170776851|gb|ACB34990.1| flagellar hook-associated protein FlgK [Leptothrix cholodnii SP-6] Length = 640 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 122/337 (36%), Gaps = 13/337 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS + N + Q + NI NA+ Y R+DT+ T V Sbjct: 1 MSTSTLLNLGTRAMFASQAQLQTTGHNIANANVAGYSRQDTVLTTVGGQYSGAGYYGRGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + + + + +KL ++ Sbjct: 61 AVQTVTRAVSAFQTDQVAQTRAQAAADSTRSDMLSRLQDSFGT--GEAGLGFAATKLFNA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + ++ + V+ +EE+ F S+ +++ ++ +++ ++ + + Sbjct: 119 FSDVASSPADPSARQVVLARSEELASRFRASSDQIEALQLSVTEDVGNTVNTINGLAQSV 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I S + +D LDQRD L+ ++S+ + ++ + +++ + ++ G +L Sbjct: 179 AELNQQIASTRGSGQEPNDLLDQRDQLVNELSQHVQVTRLEQDDGSLNLFIGGGQSLVLG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + + GV +Q S + G + L+ +++ + ++QL Sbjct: 239 NAAYEMVARADRFDPARVEVAVKVAGVERPFDQQS-LGGGTLAGLIGFQNNDLSAARDQL 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 ++A L + + + + G + + Sbjct: 298 GQLASTLASEVNRQQSLGLSLGGTAGDPLFRHVAANA 334 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 46/477 (9%), Positives = 115/477 (24%), Gaps = 35/477 (7%) Query: 31 ADNKNYVRRDT------MTTISPENVTVVTQRSENKNMFDKVLH-AHSSAIGQQRLLQSF 83 + N + + + + + + +++ + + Q + Sbjct: 168 VNTINGLAQSVAELNQQIASTRGSGQEPNDLLDQRDQLVNELSQHVQVTRLEQDDGSLNL 227 Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSA 142 + + + + ++ + Sbjct: 228 FIGGGQSLVLGNAAYEMVARADRFDPARVEVAVKVAGVERPFDQQSLGGGTLAGLIGFQN 287 Query: 143 REVQKIRADADKEIELEISNLRRFLS---------------------ELTVVNDAIKFKT 181 ++ R + S + R S N + Sbjct: 288 NDLSAARDQLGQLASTLASEVNRQQSLGLSLGGTAGDPLFRHVAANAVPAAGNASDAAGN 347 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + A D R + + + S G + + + Sbjct: 348 PAGNVALTITDSRALQASEYELSVNADGSFDVLRRSDGQRSAGL-VNGAEVDGFRIDFGS 406 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + + + G S + + I A I + P Q + V+ + Sbjct: 407 SAPLAGDRFLLQPVGGAAQSIELALTDPKGIAAASPISVTAAPSNQGTGRLNSVVIETAA 466 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + LD+ S T R + ++ G ++ Sbjct: 467 ATPYGSMTLAFGATSAGGGRDYQLLDSGGSLLSSGTWSAGTPIRYDGVAIKIDGVPAEAD 526 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + V P + + T ++ + + Sbjct: 527 TFAVG-----PTTFAASSNGNALALQGLADTAMTLGQTFTNSYAQTLSDIGVRVQSAQSA 581 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S V + E GVNL EE + L++ +Q+Y + K++ K+ T+L Sbjct: 582 ATVSAGVADRAKEELGAQTGVNLDEEAARLLQYQQAYQAAAKILQTAQKVFDTVLSL 638 >gi|124516723|gb|EAY58231.1| Flagellar hook-associated protein FlgK [Leptospirillum rubarum] Length = 561 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 52/353 (14%), Positives = 109/353 (30%), Gaps = 13/353 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS +L + N ++ ++ +NI N + Y + S Sbjct: 1 MSGVLGILNIGKSGIEANEAGLSTAGQNISNVNTPGYTVENVQFDQSQPNHGSPGMVGNG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V R + D + + +G + + + N + IS+ Sbjct: 61 VRATGIRRVVNSFLDAQMIRQKTRMGFWESSRLSLSELDTYFTH-AQNQGLSKDISRYLS 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + E + + + T+I + + ++F+ A + R + + +S + LS+ Sbjct: 120 TWEVVANHPLDRSARATLITYGKNLAEDFHQMASLYSQTRNRLGELLTSSVSTVNADLSK 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I A + +DQR L+ +IS + N + ++ G Sbjct: 180 IAHLNREILRAEAGGESPNTLIDQRQQLMVQISTLTNAHFFTDKNGAITLHL-GGQAAIT 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +S + + GKI L +RD VP+ + Sbjct: 239 DIDSGRLEAVFDSSRNGFRILIHPPGHSGPPIDITDRIHGGKIGGYLDVRDKKVPLLEEH 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 LD +A LI + ++ + T+ N Sbjct: 299 LDSLAHGLINHVNALHVQGYGLNGKTNQNFFLPTTTVEAQGSLPPGVTLTANA 351 >gi|225548519|ref|ZP_03769567.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 94a] gi|225370782|gb|EEH00217.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 94a] Length = 627 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 138/457 (30%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSVELIDTVINKM 625 >gi|218249283|ref|YP_002374709.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi ZS7] gi|218164471|gb|ACK74532.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi ZS7] Length = 627 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWTNNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWTNNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y N+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 ++K I + +++ T++ + Sbjct: 605 IAASKFITVSVELIDTVINKM 625 >gi|104782843|ref|YP_609341.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] gi|95111830|emb|CAK16554.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] Length = 463 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 49/477 (10%), Positives = 120/477 (25%), Gaps = 20/477 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----RSENKN 61 FN + A++Q NI N + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTNGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + + + + + + + +++ Sbjct: 62 LANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSDNGSLSYSRAGAFQTNKDNFVVTSDGL 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A+ + +++ + + I S + + T Sbjct: 122 RLQGYA---ADANGKIQKGVLTDLKIDTSALAPKSTTLIDQGINLNSSALDIPLQVWDAT 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A+ S+ N+ V+ T + N Sbjct: 179 ATPPAMVPNKPFDPTDRTTYSDSFPTKVYDSQGNEHVMEQFYRKTGTNEWTMYTLVDGRN 238 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 +T + + G + + P G +K + V Q + I S Sbjct: 239 PFTPGAAAPA----GTTPLTGTINFNPDGSVKNMSTAATGVPTTPAGQFEWSVTNNIFSM 294 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P A ++ + G+ ++ Y + + + Sbjct: 295 KGWVPAAKDAAGN-------WASNGAVGNADGMRLSMNSTTSYNTATARMSQSQDGYATG 347 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + ++ + + + ++ +A L + W E S + Sbjct: 348 ILSNLSIDSTGVMFASFSNQQSRAIGQVAIASFANPQGLQQIGG--TRWKESFASGIPGI 405 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + VNL +EL LIK + +Y + K I ++QT+++ Sbjct: 406 DAPKTGTLGSVESNSLEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQM 462 >gi|241765797|ref|ZP_04763738.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN] gi|241364308|gb|EER59458.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN] Length = 664 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 51/466 (10%), Positives = 132/466 (28%), Gaps = 30/466 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N + Y R+ + + V V T Sbjct: 2 SLLNVGARALLANQVALQTAGHNIANVNTPGYSRQTVVLQTVQGQFTGGGYIGQGVDVQT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + A S + + I+ + +S Sbjct: 62 ILRNQSELLTRQAAAAGSTQSADATRAERLRQLQEVF--SGGATGLGAAINDMMNSFSDV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + +E +++ V +I+ +++ I+ + S++ VN Sbjct: 120 VSSPTDLTARTVALTRIDETAARMRSASDRVNEIQYTVTEQLGSSITAINSLASQIASVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LD RD L++ I++ + + I ++ + ++ + L Sbjct: 180 EQIARAKGNGQTPNDLLDHRDQLIRDINQYVQTTQIPADDGTVGLFVAGSQPLVLGTNAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S ++ + G + + G + LL+ ++ + +N L Sbjct: 240 PLSVGDAQDFPGSGQLKLYFNPPGATPIEIDENMLGGGSVSGLLRFNNTDLAEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA + + + + + + G + + TI + +P+ Sbjct: 300 MALAIGTTMNYQQTLGLTLDGAAGKPLFATPASVQGSTAGSAVGTIDFTDPTKFSPTQFA 359 Query: 353 DG---------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 G + + + + + AG L + Sbjct: 360 ASDYEVRYDAAGVGGQVVRLSDGKATAFASVGALAATQIDGLTFNFTTAGAANERVLFKP 419 Query: 404 ARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ G ++ + + + S GV Sbjct: 420 FASAAGNIQALVYSPRDLAAANPVNAAMGTANAGTLQLSQLKATGV 465 Score = 86.2 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 1/206 (0%) Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 L Q++ + VP + + I P + Sbjct: 457 LSQLKATGVPTPPGLVLPPNGDTATPPAFPGGIQLRFNAGPPATYDVLNRGSSPATTVAT 516 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP-VAG 393 ++ + + G+ NV N + ++ N + + Sbjct: 517 AQPYTPGAPISIDGWQITLQGTPKSGDTVNVGNALDPQYGDYYTRNAGNASALMGLRDVK 576 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + N TL + +I + + S + ++ + GVNL EE + LI+ Sbjct: 577 MFDNATLSDGYAGAIAQVGTRTQSASFAANLSTTIAANLERDRTAVSGVNLDEEAAKLIQ 636 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q+Y S K++ + L++ V Sbjct: 637 FQQAYQASAKMLQIAQNIFDNLIQTV 662 >gi|1518046|gb|AAB62740.1| FlgK protein [Borrelia burgdorferi] Length = 616 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + + N ++ + GK+ +LL IRD + Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N+L+ +A +I +E + G L + + + Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSSFSQELKLTDDRGRYDTNGNGQF--- 352 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + S ++ F G + + P + + Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + + G Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 42/362 (11%), Positives = 96/362 (26%), Gaps = 11/362 (3%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 R N + L + + E+ ++ + I Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311 Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + N F K D D I I++ + Sbjct: 312 VNEIHEAGRGMDKKNGRSSFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T +I N+ + + + + ++ K +IKA+ + Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 D + +++ L + + D + Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + S + N N D + + + I N+ Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 TL +Y RN+ + S + +++ + GVN EEL+ +I+ +Q++ Sbjct: 545 TLNDYFRNTRSNIRIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604 Query: 459 NI 460 Sbjct: 605 IA 606 >gi|152985192|ref|YP_001349650.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PA7] gi|150960350|gb|ABR82375.1| flagellar hook protein [Pseudomonas aeruginosa PA7] Length = 462 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 112/478 (23%), Gaps = 23/478 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62 FN + AS NI NA + + + + + + Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + + + + + Sbjct: 62 SDISQMFKQGNFETTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ T +L++ + + + + + Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPKATSSIQQSYNLDST 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240 K D D S +GI N + M + P + ++ Sbjct: 166 KKPPTVTPFDPSDASTYTSSSSLGIYDSQGNAHTMSQFFIKNEPNPNATPPIPENSWTMK 225 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +P + + + ++ ++A + + Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVSFDASGQMTSVRAPDGSTAGPGFSIDPATNVIQFSAASG 285 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + GI+ + + QY + + Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGSASGITFDMRKSTQYSTAFAQSNPIQDGYTT 345 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +K +A L + W++ + S Sbjct: 346 GQLAGLEIDETGVVFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSSESGEPA 403 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V++ EL LI +++Y + K I D + QT++ Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISSELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461 >gi|183220587|ref|YP_001838583.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910695|ref|YP_001962250.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775371|gb|ABZ93672.1| Endoflagellar hook protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779009|gb|ABZ97307.1| Flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 464 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 50/491 (10%), Positives = 119/491 (24%), Gaps = 40/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ + N + I NI N + + Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELQGASEPNERIG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T Q + A+ E + Sbjct: 61 GTNPKQVGLGSLIAAIDKIMTQGALQTTGKNTDLAVSGEGFFVVKDGDKQFYTRAGAFNV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + +E + SA ++ I + + F S Sbjct: 121 DKNGFYVNPANGLKVQGWNSRLDESGNKYINSAGSLEDIVIPLYSKEPARATQNVDFQSN 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L A+ + D + I + + N M V Sbjct: 181 LNASVAAVPPDATEEDIQRYINDPDPRQRRGHVTSINVYDELGNTRQMGVEFYK----MR 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + F+ ++ V+ + N + VS N V ++ + D V + Sbjct: 237 ENVWKMRFKLEDASQVSVDVNGTGGENTSVSGNTELEVSFTPDGKIISVSDGVDSQTTGK 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L I L G + + Q+ S+ + Sbjct: 297 LKA---------------------DISFRIPGNPSAQKFSLNLGEAGLVGGITQFSSDFT 335 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 ++ + + + + +A L + Sbjct: 336 TKAVKQDGYPMGYMESFSIDNTGTVTGVFSNGVRQPLARVALANFTNPAGLNKEGDTMYS 395 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S ++ I+ V+L ++ + +I ++ + +++ I+ +D Sbjct: 396 F--SLNSGEANIGEAGSQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTIVTSD 453 Query: 470 KMLQTLLEGVK 480 +M+Q +L + Sbjct: 454 QMIQEVLGLKR 464 >gi|238764397|ref|ZP_04625347.1| hypothetical protein ykris0001_37640 [Yersinia kristensenii ATCC 33638] gi|238697423|gb|EEP90190.1| hypothetical protein ykris0001_37640 [Yersinia kristensenii ATCC 33638] Length = 338 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 126/331 (38%), Gaps = 13/331 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N A + + A +++ NI N Y R++T+ + V V Sbjct: 1 MNTAMSGLSAAQYALSTVSNNISNFQVAGYNRQNTVFAQNGGTLSPAGFIGNGVAVTGVN 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 E L A + + + + ++ +N+ + + ++L++ Sbjct: 61 REYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFNNLQNLVS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N +D KTV+ AE +V F + + ++ + +++I + + + ++ +ND Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDNGVNQKISDSAAQINNYAEQIAKLNDQ 178 Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I +S + + LDQRD L+ ++++I+ ++ ++ + V + G +L + Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDAYNVSFAGGLSLVQGPNAYK 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +S T + S + G + L+ R + +NQL ++A Sbjct: 239 VEAIPSSADATRLTLGYKHGTSDTIEIDESRLTSGSLGGTLKFRSEALDSARNQLGQLAL 298 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 V+ SF+ + ++ G K Sbjct: 299 VMADSFNTQHKAGFDANGDEGKDFFSFAKPS 329 >gi|82702459|ref|YP_412025.1| flagellar hook-associated protein FlgK [Nitrosospira multiformis ATCC 25196] gi|82410524|gb|ABB74633.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 638 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 63/442 (14%), Positives = 149/442 (33%), Gaps = 20/442 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS +F + A + NI N Y R+ + + S + V Sbjct: 1 MS-NGIFGIGLSALQAAQRGLLVTGHNISNTATPGYTRQQVIQSTSDARATGSGFIGQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + + + + Q S + + AD + + + S Sbjct: 60 QVDTVKRAYNQFLSRQVAQAGTESSQLETYFSQMKQIDSLLADSMGGSGLSPALQDFFGS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ + N +E ++++ NAE +V+ F++ ++ +I+ +++IE + + +++ Sbjct: 120 LQEMATNPAEVASRQSMLSNAEMLVRQFHSMNSQLNEIQEGVNRQIENSTALINTLGAQI 179 Query: 171 TVVNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N+ I A+ A+D DQRD L+ ++++ + + + +++ V+ G L Sbjct: 180 AKLNETIHMAESSANGQPANDLRDQRDELVAQLNDEVRATVV-QSDEGYSVFLGGGQPLV 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++ + G + + + K+ LLQ R+ ++ +N Sbjct: 239 MGSQASQLTARPSAMDADRLEIIHVMGGSSIPLKEANLDGG-KLGGLLQFRNEIIDTVRN 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQ 343 L +A L G+F+E+ + +++ G + + I I Sbjct: 298 GLGRVAIGLAGTFNEQHRLGQDAQGNLGGDFFTTPGPVVAASTENTGSAVIDAEIVSYRD 357 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + L G+ + L+ Sbjct: 358 LDVSDYRLSFDGANYTLQPIRNGVEGTVQTFTTFPQTVDGVRLNLASGTVAAGDEFLIRP 417 Query: 404 ARNSIGWLEKNRSDSHDLHMKS 425 G + + D+ + + Sbjct: 418 TAKGAGQIAVSVQDTDKIAAAA 439 Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/450 (9%), Positives = 109/450 (24%), Gaps = 14/450 (3%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 S R + + ++ + + Q S + T Sbjct: 190 ESSANGQPANDLRDQRDELVAQLNDEVRATVVQSDEGYSVFLGGGQPLVMGSQASQLTAR 249 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S + LE I K + ++ + +R + Sbjct: 250 PSAMDADRLEIIHVMGGSSIPLKEANLDGGKLGGLLQFRNEIIDTVRNGLGRVAIGLAGT 309 Query: 163 LRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 L + N F T + + +EI+ + ++ + Sbjct: 310 FNEQHRLGQDAQGNLGGDFFTTPGPVVAASTENTGSAVID-AEIVSYRDLDVSDYRLSFD 368 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-----SAVPKGKIKAL 275 ++ T + + ++ T + + + V++ +A G+I Sbjct: 369 GANYTLQPIRNGVEGTVQTFTTFPQTVDGVRLNLASGTVAAGDEFLIRPTAKGAGQIAVS 428 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF-----IADGIKDLDNKL 330 +Q D + + + P L D Sbjct: 429 VQDTDKIAAAAPIRTSAPTTNTGTGRISAGTVNAPLPTDPNLQQAVTLTFTSATTFDVSG 488 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + ++ D + ++ + Sbjct: 489 TGTGNPASVPFTAGGPITFNGWTVQITGTPQPGDTFSIGPNTDGVADNRNALLLGALQSS 548 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + + + + + + GVNL EE + Sbjct: 549 NTLAAGGASYRGAYGQLVSLMGNKTRELEVTAGAQAALLTQTRALQQSEAGVNLDEEAAN 608 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L++ +Q+Y ++K+I ++M LLE + Sbjct: 609 LLRYQQAYQAASKVIQTANQMFDALLEITR 638 >gi|150390478|ref|YP_001320527.1| hypothetical protein Amet_2716 [Alkaliphilus metalliredigens QYMF] gi|149950340|gb|ABR48868.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 441 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 35/481 (7%), Positives = 115/481 (23%), Gaps = 43/481 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + +I NI N + Y + + Sbjct: 1 MMRSMFSAVSGLQAHQLRMDAIGNNIANVNTVGYKGTRVTF----------------QEV 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F + + + G + ++ + + Sbjct: 45 FSQTIRGAGAPQG-------------GRGGTNPQQVGLGVNVASMST--FHVRGSAESTG 89 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ N + + + + + E++ + + + + N Sbjct: 90 YNTDLMINGDGFFIVSSDANDQNHTYTRAGNFELDEAGNLI-TPGGQRVMGNMYDVESGR 148 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + +S + ++ V+ + Sbjct: 149 MGTGLQGLQISKSMTSPPMSTGVPLTDPQDATIPKSVFFGGNLNSDVQPNATL------P 202 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +G + + ++ IR + V +N+ Sbjct: 203 VLDEFLEDLVDAEGKSSVARDTTFTVYDELGGTHDIRLAFVKTEENKYGVYVVENGVITD 262 Query: 303 EKDPIAGNSENVPGLFIA---DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D + + + + Q + D K Sbjct: 263 RIDHELEFEQGKLSDGTDLVLELTGLGNGASDFTFTVDFGAVTQVSNESDVSADVRVGYK 322 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + + + + + + +A L + N + S Sbjct: 323 QGNLEDFTIDSSGVITGVFNNGYKRPIGQVAIANFRNPAGLEKIGENM--YRNSPNSGEP 380 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ V+L E + +I ++ + ++++I +D+MLQ ++ Sbjct: 381 LVGTPGSGGRGTLNPGTLEMSNVDLSREFTNMITTQRGFQANSRIITTSDEMLQEVVNMK 440 Query: 480 K 480 + Sbjct: 441 R 441 >gi|16799788|ref|NP_470056.1| flagellar hook-associated protein FlgK [Listeria innocua Clip11262] gi|16413165|emb|CAC95945.1| lin0713 [Listeria innocua Clip11262] Length = 506 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL +S GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ + W + + + Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|220917708|ref|YP_002493012.1| flagellar hook-associated protein FlgK [Anaeromyxobacter dehalogenans 2CP-1] gi|219955562|gb|ACL65946.1| flagellar hook-associated protein FlgK [Anaeromyxobacter dehalogenans 2CP-1] Length = 469 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 69/463 (14%), Positives = 149/463 (32%), Gaps = 35/463 (7%) Query: 26 RNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74 N++NA+ Y R+ + + T+ + L A Sbjct: 27 HNLQNANTPGYARQRAVLATTLPAQQAGGAWIGRGATLAQVTQARDRFLEAQLPAAQGRA 86 Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S +++ D P + L SL S+ S+ L + + A + Sbjct: 87 ARSAAASSLLGAVQVL--DPEAEGGPGEALGGLYASLTELSQAPSDPGLRQAAVAAARTL 144 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQ 193 + N + + ++ RA AD I +S+ +E+ +N I+ A + +D LD Sbjct: 145 ALSLNRARQGLEDARAGADARIAAGLSDANALAAEVAALNRDIRAARAVGAGEPNDLLDA 204 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 R + +++E+ G + + D+ + G+ L + + + Sbjct: 205 RQRSVDRLAELTGATPAATSEGDVSLLLPGGSALVAGLSASTLLPQPGP-------DGHL 257 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + P G++ L+ + LD++A + + + Sbjct: 258 SVQLATGGVCADVAPGGELGGLVDASSGPLKDAITALDQLAWAVGNQLNSVHRAGWGLDG 317 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G + D + ++PS L + + Sbjct: 318 GTGRDLLDVGATAAGAARRIAVS-----AAVAADPSRLA-----TASAAGQPGDAGNVLA 367 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 L+ D +AG++ L G + + H++ Sbjct: 368 LLATSTTRIATGQGSDLLAGLDATGAL----SRITGTFGAAARGLAASAAQDAGLAGHLA 423 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + GV++ EEL + K +++Y+ +K+I + +M TLL Sbjct: 424 TMRESASGVSVDEELLEMEKAQRAYDAISKVIQASSEMFDTLL 466 >gi|289548122|ref|YP_003473110.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289181739|gb|ADC88983.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 454 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 56/491 (11%), Positives = 116/491 (23%), Gaps = 50/491 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV----TQRSE 58 +L F A N N+ N + + + +VTV T + Sbjct: 1 MLRSFFNAVTGLNAYRTWMDITSDNLANVNTIGFKASRPIFQDVISSVTVGLNTVTNTIK 60 Query: 59 NKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110 VL + Q + + D + R S Sbjct: 61 TTTYGAGVLIDSTQKIWTIGNFKQTGINTDLAIQGRGLFILKDPISGAHYYTRDGEFRLS 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + N + L +D T ++ I+ + + Sbjct: 121 RDGFMVNSAGLKLQGFRVDENG------RTVGTGLEDIKV-VPQLEPKPTGVINFL---- 169 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 A+ + + + D + I + +Y Sbjct: 170 -----QPSNLNATATEPPNPFNPLDPSSYNYRYTLTIYDSLGTPYQADMYFRK------- 217 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + I + + V L+ +V+ Q Sbjct: 218 -------TNLPNQWEIHLRADIDPNSPGYELSGDWTVTFDSYGKLIYDNATVLREPQGSN 270 Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 S P G + I G G Q+ S+ Sbjct: 271 FAYYLNPANLSVPASTPSGGTFPSASVWRIYVGTSLQSGAPNPGQPIPTSFVTQHASDFV 330 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 ++ L +V L+ ++ Y + + VA + L++ N Sbjct: 331 VTASQNGYARGDLVDVYVLSEDGAVVGVYSNGKSLPLYRVAVAVFSDPEELIKKGANLYT 390 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + V++ E LI +++Y + K I T+ Sbjct: 391 SISTPTVMVP-------GGAEKVRSGMLEMSNVDIATEFVNLISAQRAYQANAKTITATN 443 Query: 470 KMLQTLLEGVK 480 +L + V+ Sbjct: 444 AVLDETVNLVR 454 >gi|197104256|ref|YP_002129633.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1] gi|196477676|gb|ACG77204.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1] Length = 700 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 56/424 (13%), Positives = 125/424 (29%), Gaps = 11/424 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55 MSL A + N A ++ NI N + YVR+ + V V Sbjct: 1 MSLNVTLQTAASGLNAAQASLRAVSDNIANVNTPGYVRKAVVQQPLVVDGVGMGVRVQGM 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S + + + + + D + ++ + + + Sbjct: 61 KRITDDYLQSASLTAASDSSRWAAVAQYLDNAQSLFGDPSSPGFFFSRLDEIYGAFATAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S +L I N ++ + + ++ ++ + I +I L+++ +N Sbjct: 121 DDPSSSLLRSQSIANIQDFLAEADRINSQLSELGGTVETRITADIDRANDLLAQVDRLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I DA + + LL ++S ++ + R + V +++G L Sbjct: 181 EISRAKMVNADASGSENIQSQLLDELSSLMNVRVARRAEGGVTVRSTEGVLLAGEGGSAT 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T S G + G+I+ L+ +RD +P Q+QL E Sbjct: 241 LSYVRSDSTPGYISAKPSGGGTDAQPI---QIASGEIRGLMDLRDQELPKLQDQLGEFLT 297 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + LD G +N +R Sbjct: 298 RAVDQLNAAHNASVAYP--APSTLTGRNTGLDLPTAVGGFSGATTLAVMDANGVLVRRVD 355 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKN 414 + + + N A ++ N++ E Sbjct: 356 VDFTAGTMSANGGPAVAFTPGTFLATLNTQLGGQATASFTGGTLSIAGAGANTLAVDEGT 415 Query: 415 RSDS 418 + Sbjct: 416 SQKA 419 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 107/386 (27%), Gaps = 9/386 (2%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + + + ++ + +D + A A Sbjct: 323 NTGLDLPTAVGGFSGATTLAVMDANGVLVRRVDVDFTAGTMSANGGPAVAFTPGTFLATL 382 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 +L F + A A + +++++ + + Sbjct: 383 NTQLGGQATASFTGGTLSIAGAGANTLAVDEGTSQKAGRGFSHFFGLNDLVRSNGFTNYD 442 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + G T + + ++ + P + + S+ + Sbjct: 443 TGLRPTDPHGFTAGDPITLRLSSPDGLPLRDITIPVPAGTQMSDLVNALNSSATGVGLYG 502 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + FQ A+V + + + + G S + A + Sbjct: 503 SFSLDAQGALTFQGAPPTNAQVSVVTDNTQRGAGGPSISQLFGLGAVERSNRAG------ 556 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 V+ ++P+ L G G + + F + Sbjct: 557 --RFQVDGTLDADPTRLALGKLDFSGGFTLPAIRPGDGRGALALSQAGDVATRFQAAGSL 614 Query: 395 N-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N+T+ YA G + +N + + + V N + + GVNL EEL + Sbjct: 615 GQVNMTVSRYASEFGGSIGRNAASAETRKESAAAVLNEATARRQSVEGVNLDEELVNMTT 674 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q++N S +++ + LL V Sbjct: 675 YQQAFNASARMVQAAKDLFDVLLGMV 700 >gi|296186751|ref|ZP_06855153.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] gi|296048788|gb|EFG88220.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] Length = 463 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 90/241 (37%), Gaps = 19/241 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N +++ + NI NA+ Y R+ + Sbjct: 1 MSGLFGTLNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V V T + D + GQ + F + E + ++ + + Sbjct: 61 PGQLGTGVEVTTIDRIRDSFLDYQIRVEKGVDGQYKGRDKFLSQLENIM-NEPTDTGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I D+ + N E V N + + N + E++K++ + I+ ++ + Sbjct: 120 DIGNFFDAWNTLGTNAKESNSRSIVAQNTLTLTTDLNHTYNELEKLKENTQTVIKDDVFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L ++ +N I + ++ +D +D+RD+LL ++SE GI+ + V TS Sbjct: 180 INSKLKQIDQLNREIIQVRVAGNNPNDLMDRRDLLLDQLSEKFGITVDRKQFEGNDVTTS 239 Query: 223 D 223 D Sbjct: 240 D 240 >gi|258404735|ref|YP_003197477.1| flagellar hook-associated protein FlgK [Desulfohalobium retbaense DSM 5692] gi|257796962|gb|ACV67899.1| flagellar hook-associated protein FlgK [Desulfohalobium retbaense DSM 5692] Length = 560 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 54/561 (9%), Positives = 136/561 (24%), Gaps = 85/561 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 +L+ + Q + + + N+ N + Y R+ ++ + V Sbjct: 3 GILSALHLGQTGMAASQKALEVVGNNVSNVSTEGYSRQTIESSALPTLQRGGLSFGQGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + E+ + L A + +G S L ++ + I + Sbjct: 63 VSSIERESNMFILERLRAAADQLGNAEAKAS--PLTDLERILSIDEGGLSDSIDDFFGAW 120 Query: 112 ESYSKNLSEDI-----------LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S N + L + + + E+ A + ++ ++ Sbjct: 121 QDLSLNPGGETEREIVLRSAEVLQTEFNQKMTSLDKLRQSIDSELNTQIAGINAKLG-QV 179 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR--------DVLLQKISEIIGISTIVR 212 + L + + V + L QR D + G + + Sbjct: 180 AKLNATVQQGLAVGKNPNTALDQRDVLLQELAQRLGATAVEGDNGAVSVQLAGGQTLVQD 239 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-- 270 + + + G + + + S ++ Sbjct: 240 TSAFTLQAANSGGVVQDFSLEIGSTTIDLSREDFGGGFGGLLNVRDEVVTGVQDEMVNLR 299 Query: 271 -----KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + N E + N+ + Sbjct: 300 SSLIQAVNGQHTQGTDLDGDTGNNFFEPVTHFKSASFGTKTAPANTTGSDSDVKVEFSDG 359 Query: 326 LDNKLCQGISETICVNPQYRSNPS------------------------------------ 349 D + T + ++ + Sbjct: 360 TDKSITIPDGTTFEGVAEAINDANVGVKATVAGTSGDYELRIASTDPDTTITTITNPSSN 419 Query: 350 ----FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------NTNVT 399 L + D+ D+ N +AG+ N T Sbjct: 420 LQSPLLSWTQDGGGGDSGLQLAIENTGDIAAGESDAPGDNRNAQKMAGLKNEKMVNGRYT 479 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 +++ + + Q + + GV++ E + L + ++++ Sbjct: 480 AIDFYGKVAADVGVAGQQNDFNRSSFQNTVDQLEARRQEISGVSINESMIKLQRYQKAFQ 539 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 S + + D+M+QTLL + Sbjct: 540 ASAQYLTTADEMMQTLLNIKR 560 >gi|308273521|emb|CBX30123.1| hypothetical protein N47_D29320 [uncultured Desulfobacterium sp.] Length = 469 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 54/481 (11%), Positives = 112/481 (23%), Gaps = 23/481 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQRSEN 59 + N I NI N + + S + + + Sbjct: 1 MSGLNALGNAMTVIGDNIANVNTVGFKESRVTFQDVLSQTVATTAGSAQVGRGTSLADIS 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + S+ F +++ NN + R + N S Sbjct: 61 SSFSQGSFESTDSSTDLAIGGAGFFMVRD----PGTSNNDYYTRAGEFRFDKDGNFVNPS 116 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + I+ +D A Q T + ++ I NL + ++ + Sbjct: 117 DYIVQGWKLDEATGQDQGTITDITLSSFTSSPSETSSLSMIMNLDSSSTNNSIGANTALS 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + DA S + + V P Sbjct: 177 ALWNGSDASGEYIA----DTDYSYQTTLKVYDSLGSTHDVSIYFDKGETAADPVWEYIVT 232 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +N G++ G I + + +A Sbjct: 233 VNPSEDLRTITDATQQGLLARGTIEFNGTSGDISGGVNSITCSLSDGAGGWTALANTDAT 292 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + E + G + + + QY S + + Sbjct: 293 ANGGYFT--FAPEFIAGSPMNVKLDFGTRFNGSEWANDALSTTQYASASTTVFQSADGYG 350 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++A + Y + +A L + N S Sbjct: 351 AGDLQAISVATDGVITGQYSNGQVLPLYRVALAKFQNEQGLYKVGGNLFSQ--TRLSGEP 408 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V+L E +I ++ Y ++K+I D+ML L+ Sbjct: 409 ITGKPGGNGLGSLSPNSLEQSNVDLATEFVRMITTQRGYQANSKIITTIDQMLSELINLK 468 Query: 480 K 480 + Sbjct: 469 R 469 >gi|134300275|ref|YP_001113771.1| flagellar hook-associated protein FlgK [Desulfotomaculum reducens MI-1] gi|134052975|gb|ABO50946.1| flagellar hook-associated protein FlgK [Desulfotomaculum reducens MI-1] Length = 586 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 33/367 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44 S A+ + NI NA+ Y R++ + + Sbjct: 3 STWFGLEIAKRGTQVYRKAMDVTGHNITNANTPGYSRQEAVISPSTPWTRPDYLTAMTPG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V R D + S G E + + + Sbjct: 63 QLGTGADVKEVRRIRDYYLDVQMRNSGSFEGYWEKKLDMAKRTETVF-LEPDGRGLQLTL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + ++ + + + + K V + +E+ F ++ I + ++ ++ + Sbjct: 122 LNFFNDWQNLNNSPQDPGVKKAVKETGDELATIFRQMHNQLSNIDKTVNSSLQYQVDQVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV-YTSD 223 + + +++ I + +D LD+RD LL ++++ IS ++N + V + Sbjct: 182 HLTTRIAELSNTIINVIGNGAQPNDLLDERDKLLDELAKFGHISVDTQDNGGIEVRFIET 241 Query: 224 GTTLFETVPRDINFEKMNSYTV----TSESNPIFIDGVVVSSNQGSAV---------PKG 270 L + S N + +DG V + A +G Sbjct: 242 SGLLVKNDVNGKVITSKLSLVPYAGKDGNENHLAVDGKDVINLTTMADYFNTAPEGAGRG 301 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 I R + N+LD +A+ +I +EK + G ++ G D L Sbjct: 302 SILGQESARLENL-SVSNKLDLLAKSIIDRVNEKSGLPGPAKITKPFSFFTGNGAADISL 360 Query: 331 CQGISET 337 I Sbjct: 361 GDEIKNN 367 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 43/126 (34%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + N G + + P + T + + + + Sbjct: 461 DDGLGHIVLSANNGEGTLKVQATGSNIGLSYLFGQPKDAYVLDTTFENFFQGIVAQVGAA 520 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 ++ Q + I + GV++ EEL+ +I+ + Y ++I D+ML Sbjct: 521 ADHHDNMLENQQAIGQQIEALRQSVSGVSIDEELTKVIQYQYGYQACARMISMQDEMLDY 580 Query: 475 LLEGVK 480 L+ ++ Sbjct: 581 LINRIR 586 >gi|187918055|ref|YP_001883618.1| flagellar hook-associated protein FlgK [Borrelia hermsii DAH] gi|119860903|gb|AAX16698.1| flagellar hook-associated protein 1 [Borrelia hermsii DAH] Length = 627 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 129/352 (36%), Gaps = 24/352 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44 S + + +I N+ N Y R+ + Sbjct: 3 STFSGIEIGKKSLFAHKDAMNTIGHNLTNTSKPGYSRQRVIMKTEMPIYAPQLNRANKAG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + ++ D + S +G F +L E + ++ + S + Sbjct: 63 QLGQGMMVQSIERIRDDLLDIRIAEESHRLGYWNSKDKFISLLENIY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + DS + S+ ++ + + + + +I A+ E+++ I + Sbjct: 122 NDFWDSWQDLSRQPQGLAERNITLERGQAFAEIVRSRFHSLNRIYTMANDEVKITIEEIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +L ++ +N I A K +D +D+RD+++ K+S +I IS + + + + ++G Sbjct: 182 NYLRNISDLNRQIAKAIAMKDQPNDLMDERDLIVDKLSNLISISIENKRDPNEFLIHTEG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + ++ N ++ + + N GK+ AL+ +RD+ + Sbjct: 242 KHLIQGAIANEFILEAANGPTRTKWNILWNNREPANINT------GKLGALINVRDNEIK 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 N++D MA + +E + G D L ++ + S Sbjct: 296 NEINEIDNMAINITELVNEVHISGHGLDQKSGRIFFDQEYKLTDESGRYDSN 347 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 77/228 (33%), Gaps = 1/228 (0%) Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + ++ N ++ +I A ++ + + I Sbjct: 398 TVQDIINKINNSNSQVTARINAEGKLEIKAIKEEERDSAIFRIRYIEDSGLFLTTYTGIL 457 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF-LRDGGSVSKKFLWNVKNLAGY 371 N G A +D++ + + ++P + S + + Sbjct: 458 NASGAEGAYNYQDVNTTNQLINTASYSISPLKNPAAWLKVSKEISEDPSKIASGIRTPTN 517 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 I + + + I NVTL +Y N+ + + + + Sbjct: 518 NMPIGNNETALRIASFVNSQIMIGKNVTLNDYFANTTSNIAIKGQIAEITKNSQEQILRS 577 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + GVN EEL+ +I+ +QS+ ++K I + +++ T++ + Sbjct: 578 LTDLRLSISGVNKDEELANMIEFQQSFIAASKFITVSAELIDTIINKM 625 >gi|228914317|ref|ZP_04077932.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845311|gb|EEM90347.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 420 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61 A + +N+ N YVR+ + V + Sbjct: 1 MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGYGVQTLGVDRITDE 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + K + S + + S + E M N S + + ++ +KN + Sbjct: 61 VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 T+I + N A+ + A ++IE ++ R L N I Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + LD+RD ++ ++S+ I + N + L Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + N + G I++ + + + ++ L+E+ + Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + +NP++ + S ++ + K Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ + + + ++S + Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 362 QKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420 >gi|152980141|ref|YP_001353117.1| flagellar hook-associated protein FlgK [Janthinobacterium sp. Marseille] gi|151280218|gb|ABR88628.1| FlgK flagellar hook-associated protein [Janthinobacterium sp. Marseille] Length = 647 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 60/413 (14%), Positives = 129/413 (31%), Gaps = 16/413 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----------NVT 51 + + + A++ A A+ NI N Y R+ + + Sbjct: 1 MSNLLSIAKSGLAAAQAGVATTGHNIANEKTPGYSRQLVIQSSLGGQNLTGGGYIGNGTN 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + + A S+ Q + M AD + I + Sbjct: 61 VDSVKRIFNDFLAAQVVAAQSSTSQLDTYYAQMNKVNNMLAD--SSVGLAPVIQSFFKGI 118 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + N + ++ AE +V F + ++ +RA + EI ++N+ + ++ Sbjct: 119 QDLVNNPGGASSRQAMLSGAEALVSRFQSMDGQLSSMRAGVNNEITGAVTNINAYAKQIA 178 Query: 172 VVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +NDAI S +D LDQRD+L+ ++++ +S + + + V+ +G L Sbjct: 179 QLNDAIAKAQNGSGQPPNDLLDQRDLLVAELAKQTKVSIVQQAGDY-NVFIGNGQPLVVG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +G + S++ G + L + R + QN L Sbjct: 238 NSNYDLVTVTSPTDPGRLEVGYVSNGTTYTI-PESSLTGGNLGGLFEYRSQSLDPIQNAL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L +F+ + + + G + + Sbjct: 297 GRIALGLAATFNAQHKLGQDQNGNLGGDFFSLASPAVTGSTKNTGNAQIGASISNVDALT 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 D + V L+ + + D T + E+ Sbjct: 357 TSDYRLSYDGTNYKVTRLSDNASMYSGATFPAGTIDGVDFSVTSGTMASGDEF 409 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 26/320 (8%), Positives = 75/320 (23%), Gaps = 6/320 (1%) Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L+ V A + +D ++S + R +++ +Y+ Sbjct: 328 LASPAVTGSTKNTGNAQIGASISNVDALTTSDYRLSYDGTNYKVTRLSDNASMYSGATFP 387 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVV------SSNQGSAVPKGKIKALLQIRD 280 D + + ++G + +A + A Sbjct: 388 AGTIDGVDFSVTSGTMASGDEFLIRPTVNGASGLNVLIKDVKEIAAATPIRTGAPTTNTG 447 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + N + + + + + + T Sbjct: 448 TGAISAGNITSAFDGSAVTTPVTLTYDSAANTLTGFPAGMPVTVTTNGVPTTFPAGTPVT 507 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + ++ + + + + Sbjct: 508 YTAGSVISFGGAEIKISGAPANGDKFTISANTNGDGDNRNMLALGELQTKNVLQGGTASY 567 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + + GVNL EE + L++ +Q+Y Sbjct: 568 NSAYSQLVSLVGNKTRELQTNSASEGALLKQMQTAQQSESGVNLDEEATNLLRYQQAYQA 627 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 S K++ M L+ + Sbjct: 628 SGKVMQAVSDMFDVLISLGR 647 >gi|218885350|ref|YP_002434671.1| hypothetical protein DvMF_0246 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756304|gb|ACL07203.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 545 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 50/552 (9%), Positives = 123/552 (22%), Gaps = 79/552 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MS+ A + ++ + NI N + + + Sbjct: 1 MSVTASMWTGVSGLLAHGEKMNVLGNNIANVNTVGFKGSRMDFQDFINQDVYSAVGVSQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V+ + + + A + F + S R Sbjct: 61 GRGVSIGAIFGDFSQGAFETTNEATDLAIGGKGFFQV-----RPKGQETSYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNA-----------------------------EEVVQNFNT 140 + Y + +L I+ A + Sbjct: 116 DNDGYLVDPHGYVLQGWEIEKARPSLSTSTAQVTTTTSQIKGAGSPKDIKLDGFTAEPQH 175 Query: 141 SAREVQKIRADADKEIELEISNLRRFL----SELTVVNDAIKFKTASKHDAHDFLDQRDV 196 ++ DA + ++ F + + + D+ Sbjct: 176 TSTITSAHNLDARDGGDKSVNGANPFFSVFNNWDGSAATPLSDSRFAYQTTIKVYDEGGT 235 Query: 197 LLQKISEIIGISTIVRNN-----NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 + +ST N + + ++F ++ + Sbjct: 236 SHELTVYFDQVSTDSVANAASGKRYWEYMVTMNPSDDLRSVNGLDFAGTSAAGILMTGTL 295 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 F ++ + G L + + V F N + + + Sbjct: 296 TFDTSGQLTDMTAFTIASGATGNLKDMNNWVPTTFSNNGYPLFVANFSGVANASYTSPTV 355 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETI-----------------------CVNPQYRSNP 348 ++ + L N S Y + Sbjct: 356 PTEAEPYLMELNFGLRNLSNSWGSAPASAAAIGSNAGNLGGLGAQGERQSTAMTSYGGSS 415 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + + + Y + + + + L N Sbjct: 416 SMIFQKQDGYTFGFLQNITVDQDGVVHGRYSNGVILDLYQITLYDFTSPTNLRREGGNLF 475 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 E S + + ++ + V+L E +I ++ + ++K+I T Sbjct: 476 S--ETRASGDALAGPANANGYGSVNSNSLEQSNVDLAREFVQMITTQRGFQSNSKVITTT 533 Query: 469 DKMLQTLLEGVK 480 D ML+T++ + Sbjct: 534 DTMLETVVNMKR 545 >gi|167628881|ref|YP_001679380.1| flagellar hook-associated protein flgk, putative [Heliobacterium modesticaldum Ice1] gi|167591621|gb|ABZ83369.1| flagellar hook-associated protein flgk, putative [Heliobacterium modesticaldum Ice1] Length = 736 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 135/452 (29%), Gaps = 47/452 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ N NI N + + Y R+ ++ + Sbjct: 3 STFFGLEIAKRGINANRIGLDVTGHNITNVNTEGYSRQTIVSVTTASLFEPSMHGVYGAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R D +G + + + A + N + Sbjct: 63 QIGTGVDVSEIRRYRDAFLDLNYRKEIRTLGAWSVKSDTLQRLQSLLA-ESDNKGLASVL 121 Query: 105 SKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ E + N VI+ + +V+ +R++ +I + + + + ++ Sbjct: 122 DQFWEAWEDVTPNTDSPPAARAVVIERGKALVETLKHISRQLDQIESSLNDRLAQMVYDI 181 Query: 164 RRFLSELTVVNDAIKFKTASK----------HDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + ++ +N I+ + +A+D DQRD+LL K+++++ I+ Sbjct: 182 NSYGRQIASINSQIQRIESGNPDKSILGGHRQNANDLRDQRDILLDKLAKLVDITVSEDA 241 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + + V +GT + R + + + + G N G+++ Sbjct: 242 SGMVSVSAGNGTLVDGVSFRTLTYYDAPDANNKALYEIKWDTGQSAYFNA------GELQ 295 Query: 274 ALLQIRDSVVPIFQ-------NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 +L+ R S+VP + ++ D GS + + + + + Sbjct: 296 GILESRGSLVPPGKETTLFGSDKFDWQISANAGSLNIEKLSSLHLTSAAPAGNYRFTIGS 355 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + K + + G S N + G + + Sbjct: 356 EWKPVSATLFLPAKGLPLATASTITMGYGGKSFNIFLNKNDDVGSFINKVNAFTRESGIQ 415 Query: 387 IFDPVAGINTN-----VTLLEYARNSIGWLEK 413 T+ + + + + L Sbjct: 416 ARLAKTASAGGLQVIFNTVKDVSASGVFTLGT 447 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 50/364 (13%), Positives = 122/364 (33%), Gaps = 5/364 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + I + + + + K+ A + L V Sbjct: 370 GLPLATASTITMGYGGKSFNIFLNKNDDVGSFINKVNAFTRESGIQARLAKTASAGGLQV 429 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + +K +AS V+ + + I+ N + V +S + T+ Sbjct: 430 IFNTVKDVSASGVFTLGTFPSPPVVSAAWTPMANITVSNGQNAVISVASSS---VLGTMT 486 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ E + S P G + + R+ ++ + +L+E Sbjct: 487 TTVVGSRVTVMQEGKERMVFDAAAMAPFSPIWEGAPAGAYEFQITKREGLIQDARRRLNE 546 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V++ S +E + ++ NP Sbjct: 547 LALVVVRSVNEVHMAGVSEADLRKDPTMARSDRKFFVDNADKISNPKRIDSIEINPELTA 606 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 +++ + G + ++ N ++ + +T ++ RN +G L Sbjct: 607 --STLACSQPSRTSSDKGTTVVGDNRNALALANLKYEKIRDFLNPMTYDDFYRNVVGDLG 664 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++ +H V+ + I + + V+L EE++ +I+ +Q+YN S +++ D+ML Sbjct: 665 VAGQEAKRMHDNQTVLTDTIDKQRQSISSVSLDEEMTNMIRYQQAYNASARMVNVMDEML 724 Query: 473 QTLL 476 T++ Sbjct: 725 DTII 728 >gi|296390550|ref|ZP_06880025.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PAb1] Length = 683 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + + AD + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++N S + V+ A+ + + FNT ++ K + ++++ S + + Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D LD RD ++K+SE++G++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + + N V G++ LL RD+V+ N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + +++ + G + I D D + + N + Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 20/434 (4%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + + + +M + + +KL +++ + LG Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + + + F K + +++ + +N + Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242 + D +++ + + V TL + F + Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429 Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 T ++ + G + + G I + + Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVGGPSPIDPAVLQNAFGANG 489 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349 + + L D D + S + Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406 + + + + L+ D I+ ++ N N + +T T + Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAYGG 609 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + SQ V +S + GV+L EE + LI+ +Q Y+ S ++I Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669 Query: 467 FTDKMLQTLLEGVK 480 + TL+ + Sbjct: 670 VARSLFDTLIGAFR 683 >gi|309390123|gb|ADO78003.1| flagellar hook-associated protein FlgK [Halanaerobium praevalens DSM 2228] Length = 572 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 141/449 (31%), Gaps = 27/449 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TTI 45 + + + + NI NA+N+ Y ++ + Sbjct: 4 IFSGLSVGLRALETQRKSLDVTGHNIANANNEKYNKQRAVHKASYPYTAPGLSNNGSAGQ 63 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + + + G + +Q E + ++ + I+ Sbjct: 64 MGTGVEIAQIERVKDQFISSQIFKETQTSGYWKEMQRGLEKVEYIL-NEPSESGIDSSIN 122 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + +SL+ S N S+ V +NA V+ +F + ++ + + + +N+ Sbjct: 123 QFWNSLQDLSNNPSDTAARNMVRENAYNVIDSFQSVENQLNDYKESINDNLSNAAANINN 182 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++ +N I S + +D LD+RD L +++S +I + + ++VV T+ Sbjct: 183 ITGKMADLNKQIVSVKGSGQNPNDLLDERDALYKELSSLINVQSREDEQGNLVVSTNGLQ 242 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + D+ + ++ I + GKI A + +RD + Sbjct: 243 LVNGSDSYDLETKGFTEDKTIPKNQDKLIHSQ---TGNEIRPTNGKIDAWMDMRDDKLDF 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++ +LD++A ++ F+ + ++ V G I + ++ + Sbjct: 300 YRGRLDKLAAEMVKEFNSQHKAGYDANGVDGGDFFKPIDEDSDQSAISQLDLTAAIKDLE 359 Query: 346 SNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + G F ++ N + + Sbjct: 360 NGLDKIAAGNKNIDTFVELDTLGNSLSGNYQVEVTENATPGKLDLVISDSDGNQVYPTSG 419 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + LE + S + Sbjct: 420 VETVDAGTTIDLEVDGSGGIQTPVTGSTT 448 >gi|297538902|ref|YP_003674671.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301] gi|297258249|gb|ADI30094.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301] Length = 650 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 144/405 (35%), Gaps = 14/405 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + ++ A ++ NI NA Y R+ + + + V Sbjct: 1 MADILSIGKSALAAAQVGLSTTGHNIANASTPGYSRQVVIQAAAQAQSSGSGYIGQGTEV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + K + +A ++ S + M +D + IS +S+ Sbjct: 61 ASITRAFNEILSKQVVNSQAASSSSQVYASQLSNINNMLSD--ASAGLNPAISDFFNSVS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N S+ ++++ A+ +V ++ + ++R+D + ++ ++ + + ++ Sbjct: 119 DLAANPSDIPTRQSMLSYAQSLVNRLQSTNSSLNEVRSDVNTQLTGSVNLVNTYAKQIAS 178 Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N++I ++ + +D +DQRD L+ ++S+ + + + + +Y +G L Sbjct: 179 LNNSIETAISSDGNPPNDLMDQRDQLVTELSKQVKTTVVPQGQGSYNIYVGNGLPLVIGK 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + T G S++P G I LLQ R + QNQ+ Sbjct: 239 SVMSLTTASSPTDPTRLEVSYQSSGKSTVLG-TSSLPGGVIGGLLQFRAESLDSVQNQIG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A VL +F+++ + G + + + I + + Sbjct: 298 QVALVLGDTFNKQHQQGIDLNGNLGGNLFNIPTPTVSASGNNQGSAIVTSQIIDARAITA 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 D + + L+ L N + P ++ Sbjct: 358 SDYRLQFDGTNYKISRLSDNVVLYNDPAAPTPASLPTPPATSLDG 402 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 32/380 (8%), Positives = 83/380 (21%) Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + L + + + + + + + Sbjct: 269 GTSSLPGGVIGGLLQFRAESLDSVQNQIGQVALVLGDTFNKQHQQGIDLNGNLGGNLFNI 328 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + + A A D+ Q D KIS + + + Sbjct: 329 PTPTVSASGNNQGSAIVTSQIIDARAITASDYRLQFDGTNYKISRLSDNVVLYNDPAAPT 388 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + + + P +S A A+L Sbjct: 389 PASLPTPPATSLDGLSFSVPAGMAANDEYVIRPTRNVATSISLAITDAKKLAIGSAMLSS 448 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + + + + A + + + + Sbjct: 449 VANSTNTGTASISIPPTGSNLTGTLGVTYASGMPGTLSMAPSTQPVTVTVSGVSTVYPAG 508 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + N + + N+ Sbjct: 509 SPITYTSGATISVGGLSFAITGTPANGDKFTLSASGPGDNRNGLLLADLQKQGTINNSTT 568 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 T + + + + V + + + GVNL EE + L++ +Q+Y Sbjct: 569 TYSSAFAELVNGVGNKTRELNITSTSEAKVLEQATAAMQSESGVNLDEEATNLLRYQQAY 628 Query: 459 NISNKLIMFTDKMLQTLLEG 478 + K++ ++ TLL+ Sbjct: 629 QAAGKMMQIASQLFDTLLQL 648 >gi|309701354|emb|CBJ00655.1| flagellar hook-associated protein 1 [Escherichia coli ETEC H10407] Length = 547 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGDDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|197122916|ref|YP_002134867.1| flagellar hook-associated protein FlgK [Anaeromyxobacter sp. K] gi|196172765|gb|ACG73738.1| flagellar hook-associated protein FlgK [Anaeromyxobacter sp. K] Length = 469 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 69/463 (14%), Positives = 148/463 (31%), Gaps = 35/463 (7%) Query: 26 RNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74 N++NA+ Y R+ + + T+ + L A Sbjct: 27 HNLQNANTPGYARQRAVLATALPAQQAGGAWIGRGATLAQVTQARDRFLEAQLPAAQGRA 86 Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S +++ D P + L +L S+ S+ L + + A + Sbjct: 87 ARSAAASSLLGAVQVL--DPEAEGGPGEALGGLYAALTELSQAPSDPGLRQATVAAARTL 144 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD-AHDFLDQ 193 + N + + ++ RA AD I +S+ +E+ +N I+ A+ +D LD Sbjct: 145 ALSLNRARQGLEDARAGADARIAAGLSDANALAAEVAALNRDIRAARAAGAGEPNDLLDA 204 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 R + +++E+ G + + D+ + G+ L + + + Sbjct: 205 RQRSVDRLAELTGATPAATSEGDVSLLLPGGSALVAGLSASTLLPQPGP-------DGHL 257 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + P G++ LL + LD++A + + + Sbjct: 258 SVQLATGGVCADVAPGGELGGLLDASSGPLKDAITALDQLAWAVGNQLNAVHRAGWGLDG 317 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G + D + ++PS L + + Sbjct: 318 GTGRDLLDVGATAAGAARRIAVS-----AAVAADPSRLA-----TASAAGQPGDAGNVLA 367 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 L+ D +AG++ L G + + H++ Sbjct: 368 LLATSTTRIATGQGSDLLAGLDATGAL----SRITGTFGAAARGLAASAAQDAGLAGHLA 423 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + GV++ EEL + K +++Y +K+I + +M TLL Sbjct: 424 TMRESASGVSVDEELLEMEKAQRAYEAISKVIQASSEMFDTLL 466 >gi|260431756|ref|ZP_05785727.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] gi|260415584|gb|EEX08843.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 50/487 (10%), Positives = 127/487 (26%), Gaps = 63/487 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N + + A+I NI N+ Y R +T + + Sbjct: 9 MTISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTAGQGGSYSAGGV 68 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R+ ++ + D+ L +++ + ++ N R + E Sbjct: 69 RTTSQRLIDQRGSLVTTNNSTDLAVQGRGLLPVRPSSQIGTPSNEMLLTTTGSFRTNAEG 128 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y S +L ++ + + ++ ++ ++ + + ++ Sbjct: 129 YLVTESGLVLLGWPANSDGSIPNVSRDTPAALEPVQLSVNQLSGAPTTEMNLRMNLPATA 188 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 DA F + I + + +N Sbjct: 189 TDAGASGDPQPLSVEYFDNLGKPETVDIELVPIVPATGSSNQW----------------- 231 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + T+ ++ + G + S G + ++ + Sbjct: 232 --------TMTLRDSASGGAVIGEYTLTFTDSRTAGGTLASVTAVSGGAYDPATGSFVVN 283 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + G+ Q + + Sbjct: 284 VAGGPVEVN-----------------------------VGLIGDPDGITQLSDTFAPVSI 314 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 S + + Y + P+A + L NS + Sbjct: 315 TRDGSAVGTMASVEIDENGYVYALYDTGVTRRMYQIPLADVPNPNGLTAL--NSQTYAPS 372 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S ++ L + + ++ EL+ +I+ +++Y+ S K+I D+MLQ Sbjct: 373 RESGTYFLWNAGEGPTGELISFAREESTTDVATELTSMIQTQRAYSSSAKVIQTVDEMLQ 432 Query: 474 TLLEGVK 480 + Sbjct: 433 ETTNIKR 439 >gi|188586026|ref|YP_001917571.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350713|gb|ACB84983.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 508 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 42/509 (8%), Positives = 127/509 (24%), Gaps = 34/509 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------NV 50 +L + N + +I N+ N + + + Sbjct: 1 MLRSMYSGVSGLRNHQTRLDTIGNNVANVNTAGFKGDRVTFQDAFNQTLEAASAPNERGG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T Q N+ ++ + + + + Sbjct: 61 TNPQQVGLGMNIGSMDTIHTQGSLENTGRDTDLAIEGDGFFVVNDGQSDMFTRVGNFGVD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFL 167 E + + + + N + + D E + NL Sbjct: 121 SEGNLVSQGTGYKVQGYAYDEDADEINTDEIVDMEIPLGDVVDPEATENVKYNGNLNSNT 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--T 225 V+ + + L+ + + + I+ + V ++ DG T Sbjct: 181 EPGETVSTTVNVFDNLGSEHTLNLEFEESGENEWQMTVRKDGILIEDEIQVSFSDDGELT 240 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 ++ + + + + + + + + + I+ +L D Sbjct: 241 SVGDEGTSYSINDFEATVQDFGGLSDSAKEDLGFDIDDDNGHDEDNIQGMLMRNDVQAGN 300 Query: 286 F-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----------- 333 + +A + G + P N +++ + + + + + Sbjct: 301 AEAEDVAALAIEVEGRYEWYHPDDINFDSLEEGDYSPDVDPIFTQDQEPQNDEEVDLLNA 360 Query: 334 ---ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I + Q + + + + Y + + Sbjct: 361 PGGIEFDLGDVRQVAGESTVEGVAEDGQAQGELETYEVDSAGIITGTYTNGETRQLGQVV 420 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 ++ L + + S + I+ V++ E+ + Sbjct: 421 LSDFTNPGGLEKLGSGL--YQPTRNSGEPSYGIAGTGGRGEIAPGALEMSNVDMGEQFTD 478 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I ++ + +++ I D++LQ L+ Sbjct: 479 MIVTQRGFQANSRSITTGDEVLQELVNLK 507 >gi|123442778|ref|YP_001006755.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089739|emb|CAL12592.1| flagellar hook-associated protein 1 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 554 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 143/400 (35%), Gaps = 14/400 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + + A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +V E L A + + + + ++ +N+ + + + Sbjct: 60 SVTGVNREYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D KTV+ AE +V F + + ++ + +++I + + + ++ Sbjct: 118 LQNLVSNAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKISDSATQINNYAEQI 177 Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I +S + + LDQRD L+ ++++I+ ++ ++ + V + G +L + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDTYNVSFAGGLSLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S T + S + G + L+ R + +NQ Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYNRGSGDTMEIDESRLTTGSLGGTLKFRSEALDSARNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A V+ SF+ + ++ G + K + + ++ Sbjct: 298 LGQLALVMADSFNTQHKAGFDANGDAGTDFFSFAQPTAIKNAKNQGDAGLTVAYTDTSKV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 D W V L+ + N + Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPTTAGADANGKPTLN 397 >gi|116049015|ref|YP_792183.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa UCBPP-PA14] gi|115584236|gb|ABJ10251.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa UCBPP-PA14] Length = 683 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + NI N Y R+D + + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R + L +S + + AD + + + +L+ Sbjct: 61 VDVRRLASDFLTGQLRNATSQNSELSAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++N S + V+ A+ + + FNT ++ K + ++++ S + + Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI ++ +D LD RD ++K+SE++G++ + +++N + ++ G L Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + + + N V G++ LL RD+V+ N+L + Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + +++ + G + I D D + + N + Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 +++ N + D N + TL Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 3/196 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 N L A V + + + + + S Sbjct: 488 NGLPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSG 547 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYA 404 ++ + + + L+ D I+ ++ N N + +T T + Sbjct: 548 QTYTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAY 607 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + SQ V +S + GV+L EE + LI+ +Q Y+ S ++ Sbjct: 608 GGLVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQV 667 Query: 465 IMFTDKMLQTLLEGVK 480 I + TL+ + Sbjct: 668 IQVARSLFDTLIGAFR 683 >gi|23016696|ref|ZP_00056449.1| COG1256: Flagellar hook-associated protein [Magnetospirillum magnetotacticum MS-1] Length = 858 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 148/437 (33%), Gaps = 12/437 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL N A + + I +N+ N + K YVR+ V Sbjct: 1 MSLTLGLNTAVSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGAL 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S G + Q++ E M + S +H I L+ S E+ + Sbjct: 61 TRNVDEGLMRDIRRQTSTQGALDVTQTYYPRLEDMFGTVGSSTSISHQIETLQASFETLA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + A+++ FN ++Q +R +AD+ + + LS++ +N Sbjct: 121 TQVNTPAFQSATVQTAKDMTDKFNEMTSQMQNLRLEADRALHDTTGLINNQLSDIFDLNQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I A D D D+RD L +S+ + I R + M VYT G TL + P + Sbjct: 181 KIVRNNAIGGDIGDLQDKRDTALTALSKYMDIQYFERGDGAMGVYTKSGKTLVDKGPAVM 240 Query: 236 NFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + + + + + + G+++ALL IRD++VP Q Q+D Sbjct: 241 SHVATTITDSWMTAAGGNFNKLTLSTSDAPDINADINDGEVRALLDIRDTIVPNLQAQID 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E+A L + ++ + N ++ + + Sbjct: 301 EVASKLKDAVNQVHNRGTIFPTQNSKMVGTRQLQNPNNTALNG-SNPQHIWYTGNDDTTI 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + + D + +T + A W+ Sbjct: 360 AMFDSSGNQIASTTLRTIMSSTSYTDAAGAATALDMSDSATTLGVKMT--DVAAKIQSWM 417 Query: 412 EKNRSDSHDLHMKSQVV 428 + + + S V Sbjct: 418 RQQSYQGNIMTAASASV 434 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 48/441 (10%), Positives = 125/441 (28%), Gaps = 10/441 (2%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + V+ + + + A ++ +F+ + + S Sbjct: 428 TAASASVDTGTMVIDSGDPSVTLAFRDQTATANGSSTTDARINFDVDGDNKADKQVAGFS 487 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ + S S+ + + A + I Sbjct: 488 NFFGLNDFFTAKVPDSIQDSDVVAKDFTLGAARSFT-----LSDPTGTIGNTISMAAGSS 542 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ ++ T N++ ++S I+++ + + + Sbjct: 543 LYDIAAKINTQTQTNESAILSSSSLTTTSTSSISITDANGTIAQVTFGAATMTLKDIADA 602 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + G++ + I + P+ I+ + + ++ + Sbjct: 603 INAKGSS-AQAKAVQIGPNAYGLRIWDNRGVPLNIEVNGGAIGVSNLKSYLGMQPSQMVE 661 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 SV+P + + + + + + + T Sbjct: 662 ASVIPEGSGYRLRIRQTSDRELY----LGATPDTLTPAGSFITELKMHTASSRKAGTTQV 717 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S R + + + K + + + Sbjct: 718 REDIQGSPAKVSRGAMQYNSDLGKYYLSEGDNTTALALGAAMSTKTNMATAGSLYAGSYN 777 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 E+A SI + + + S D + + + Y++T GVNL EE++ +I +Q+Y+ Sbjct: 778 FAEHAAASIAQVSTDAAHSKDRQDYQTTLGQALDKQYASTSGVNLDEEVANMINFQQAYS 837 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 S K+I +ML L+ VK Sbjct: 838 ASAKVISTLQEMLDVLVNIVK 858 >gi|163783192|ref|ZP_02178186.1| flagellar hook associated protein FlgK [Hydrogenivirga sp. 128-5-R1-1] gi|159881526|gb|EDP75036.1| flagellar hook associated protein FlgK [Hydrogenivirga sp. 128-5-R1-1] Length = 528 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 73/525 (13%), Positives = 160/525 (30%), Gaps = 51/525 (9%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMF 63 A F + RN+ NA+N +YV+ D + +P + R + + Sbjct: 4 ASFGIISQALEIYRKSLDIHNRNVINANNPDYVQEDPVVESFAPVGINFQDVRRDQNIYY 63 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + ++ S + + E + + Y ++ ++ K+ + + Sbjct: 64 LNLRNSKLSLVRYLEERSGVLSNVEGIFQELFEGTGINDYTNRFYEAYLDVMKDPTNEGA 123 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK----F 179 + ++A+ + + ++ + D + +S + +L VN I Sbjct: 124 KNELYNSAKSLADFLRNKSSDIDALDNSIDYNLRDVVSRINELSRKLFNVNREITVMYAQ 183 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINF 237 A D +FLD RD L+++SE+I I + V TS G L + + + Sbjct: 184 NYARGKDYKNFLDIRDKYLRELSELINIDVQQDEIGRVKVTTSKGFALVDFQDNYWQLEY 243 Query: 238 EKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 Y + + N + I GV ++ + A I + +P Sbjct: 244 TGGKLYWKSKDGNDVDITGVIESGKVKALLDARADLARFKNELNSIASQLISEVKLPRAN 303 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + R + + L G + S+ Sbjct: 304 SGTWYLVRNVSDPTQPLSTYGIDGNLSFYDNSTTPPTLLATIPNYGTQSLNSLATAINSD 363 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV--------- 398 + G S + + + +Y + +++ N Sbjct: 364 ATLTGAGFSATVVNNPDGTYTLRIDNTNPNYSVNDTGGNVYESSPVFTGNDASDISPVST 423 Query: 399 --------------TLLEYAR-----------NSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 T ++A IG + ++D D + + Sbjct: 424 LRSDIDDVEFSLTDTFSDFANLWWDNSKGKVNTFIGDISTTQADVKDKLRIESALLESLD 483 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V++ E ++KV+++Y K++ D++LQT L Sbjct: 484 RKLKEMQSVSIDREFMEIMKVKRTYEAVAKVVTTIDELLQTTLNM 528 >gi|313639049|gb|EFS04037.1| flagellar hook-associated protein FlgK [Listeria seeligeri FSL S4-171] Length = 507 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 76/511 (14%), Positives = 155/511 (30%), Gaps = 36/511 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47 M L FN + + + A +NI N + Y+R+ + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + + + + N P+ + Sbjct: 60 YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +KN + ++ + N ++++ + E + +L + Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +L +N AI A + +D L+QRD +L +S GIS NN V + G L Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGK 271 + + S + S S G Sbjct: 237 VVQGDETTEITSTRTASGFEFSVGGQTLNMPEGSISASVRVNQNEIKSYQAKIETFSNGL 296 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 KAL I+ V + L ++ L + +++ ++ E + L G+ + + Sbjct: 297 AKALDDIQVKNVNKIMDDLQKIGDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356 Query: 332 QGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 G + Y ++ S V W + + + Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWTINPAISNNAENKQFLGVIAADIAS 416 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T + I + + S S + +SES S+ GVN+ EE+ Sbjct: 417 LKTDKNIEGTTFPNFMDGIITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +++ + Y + K + + M++ LL + Sbjct: 477 TNIMQYQSYYVANTKAMNTVNDMMKALLAML 507 >gi|91210234|ref|YP_540220.1| flagellar hook-associated protein FlgK [Escherichia coli UTI89] gi|117623268|ref|YP_852181.1| flagellar hook-associated protein FlgK [Escherichia coli APEC O1] gi|218557964|ref|YP_002390877.1| flagellar hook-associated protein FlgK [Escherichia coli S88] gi|237706932|ref|ZP_04537413.1| hook-filament junction protein FlgK [Escherichia sp. 3_2_53FAA] gi|306814069|ref|ZP_07448242.1| flagellar hook-associated protein FlgK [Escherichia coli NC101] gi|91071808|gb|ABE06689.1| hook-filament junction protein 1 [Escherichia coli UTI89] gi|115512392|gb|ABJ00467.1| hook-filament junction protein FlgK [Escherichia coli APEC O1] gi|218364733|emb|CAR02423.1| flagellar hook-filament junction protein 1 [Escherichia coli S88] gi|226898142|gb|EEH84401.1| hook-filament junction protein FlgK [Escherichia sp. 3_2_53FAA] gi|294491481|gb|ADE90237.1| flagellar hook-associated protein FlgK [Escherichia coli IHE3034] gi|305852706|gb|EFM53154.1| flagellar hook-associated protein FlgK [Escherichia coli NC101] gi|307627448|gb|ADN71752.1| flagellar hook-associated protein FlgK [Escherichia coli UM146] gi|315287426|gb|EFU46837.1| flagellar hook-associated protein FlgK [Escherichia coli MS 110-3] gi|323953232|gb|EGB49098.1| flagellar hook protein FlgK [Escherichia coli H252] gi|323957906|gb|EGB53618.1| flagellar hook protein FlgK [Escherichia coli H263] Length = 547 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDRTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|229183930|ref|ZP_04311146.1| Flagellar hook-associated protein FlgK [Bacillus cereus BGSC 6E1] gi|228599582|gb|EEK57186.1| Flagellar hook-associated protein FlgK [Bacillus cereus BGSC 6E1] Length = 420 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61 A + +N+ N YVR+ + V + Sbjct: 1 MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGYGVQTLGVDRITDE 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + K + S + + S + E M N S + + ++ +KN + Sbjct: 61 VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 T+I + N A+ + A ++IE ++ R L N I Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + LD+RD ++ ++S+ I + N + L Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + N + G I++ + + + ++ L+E+ + Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + +NP++ + S ++ + K Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ + + + ++S + Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 362 QKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420 >gi|300816784|ref|ZP_07097004.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1] gi|309798076|ref|ZP_07692451.1| flagellar hook-associated protein FlgK [Escherichia coli MS 145-7] gi|300530558|gb|EFK51620.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1] gi|308118359|gb|EFO55621.1| flagellar hook-associated protein FlgK [Escherichia coli MS 145-7] Length = 547 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAILQNTKNKGDVAIGATVTDASGVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|303240172|ref|ZP_07326692.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] gi|302592263|gb|EFL61991.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] Length = 689 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 60/461 (13%), Positives = 143/461 (31%), Gaps = 38/461 (8%) Query: 1 MSL-LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS+ A F A++ + + NI N + YVR+ + + Sbjct: 1 MSVGFASFEIARSGMTVNERALSVTGHNIANVNTAGYVRQQAIISSGPMQNENTYQLGLG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + R D + S+ +G + + + D ++ +++ D Sbjct: 61 ADIEQIRQIRHQFLDSIYRRESTTLGYWKTRDKTFQDIQSILG-DPMDSGLQEVMNQFWD 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + SK + V E +V+ N ++ K++ D + E + I + + Sbjct: 120 SWQELSKEPDSLTVRALVAQRGEALVEQVNHVGSQLDKLQEDLNSEFSVRIDEVNSITGQ 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I S+ A+D+ DQR+ L+ ++SE+ + + + + + + Sbjct: 180 IAKLNLEILKVEISEDTANDYRDQRNSLVDRLSELANVDVTEMQDGQLDITLGGYFLVSK 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + N +E++ +F + + + G +K L++ R V ++ Sbjct: 240 -------GVQTNLVAEENENSGLFFVPKLAGKDIEVPIRSGILKGLMESRGQVFGAVGSE 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIAD------------------GIKDLDNKLC 331 + D ++ N+ + + + Sbjct: 293 ENGCPNTKADISFVVDVSDSSATNLTNVQSSIAQYIEDLKRRGIDYNLRLITYGSNVNSN 352 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDP 390 ++ + D G+ + + + + N Y F ++ D Sbjct: 353 VNYGGNTTAFQAAVASLTSTADTGNNFGDVVAELDGITDFRSGANKYAVVFSGESIDGDS 412 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 AG + + ++ S D S Sbjct: 413 GAGSVITTSSADAYATTLKNKGITTSVVTDTSYYSTGAAGE 453 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 125/375 (33%), Gaps = 26/375 (6%) Query: 129 DNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 +A + ++ A+ ++ + R D + L + N + + Sbjct: 312 SSATNLTNVQSSIAQYIEDLKRRGIDYNLRLITYGSNVNSNVNYGGNTTAFQAAVASLTS 371 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D + ++E+ GI+ N V S + ++ + T+ Sbjct: 372 TA--DTGNNFGDVVAELDGITDFRSGANKYAVVFSGESIDGDSGAGSVITTSSADAYATT 429 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 N VV ++ S G+ I D + + L+ + ++ Sbjct: 430 LKNKGITTSVVTDTSYYSTGAAGETIGWNVISDGTLGKLYDINSADYEELMTNINDNINS 489 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 N + + DL ++ I+ S+ L + + + F + + Sbjct: 490 DVNEGISVVKDSLNIMPDLRKRMNALINILAREVNYLHSSGKTLGNPPTNGEDFFVAINS 549 Query: 368 LAGYPDLINHYCDSFNK-NFIFDPVAGINTNVTL----------------------LEYA 404 D+ + N I +G + + T+ +Y Sbjct: 550 AYPIGMGNIKLNDNLSSLNNIVASESGASGDNTIALAIANIRGTDCLQDLKGILSTDDYY 609 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 ++ I + S++ + Q + + + + +GV++ EE+S ++K + +Y+ S++ Sbjct: 610 QSIILSVGNGGSEAEGITESQQKLVDSANSQRQSIMGVSMDEEMSNMMKYKFAYSASSRA 669 Query: 465 IMFTDKMLQTLLEGV 479 I D+ML T++ + Sbjct: 670 ISIVDEMLDTIISRM 684 >gi|74317646|ref|YP_315386.1| flagellar hook-associated protein FlgK [Thiobacillus denitrificans ATCC 25259] gi|74057141|gb|AAZ97581.1| Flagellar hook-associated protein [Thiobacillus denitrificans ATCC 25259] Length = 629 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 124/406 (30%), Gaps = 13/406 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 ++ Q+ A ++ NI NA Y R+ + + + Sbjct: 3 TSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQIE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + ++ + + + AD + + ++ Sbjct: 63 TVKRVYNEYLGVQVQTAQASKSGLDSYYAQIKQIDNLLADPAS--GLSPSLQDFFSGIQE 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + +AE + FN+ A + +I + +I + + + ++ + Sbjct: 121 LAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVNSQIVSSVDVINTYAEQIARL 180 Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 NDAI AS A+D LDQRD L+ +++ I + + + + V+ +G L Sbjct: 181 NDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + VS S + GK+ L++ R + QN L Sbjct: 241 TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGR 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L SF+ + + + G + S + S+ L Sbjct: 301 VAIGLASSFNAQHRLGIDLNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALT 360 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + D + + ++G Sbjct: 361 TSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLSGTAAAG 406 Score = 93.2 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 36/372 (9%), Positives = 94/372 (25%), Gaps = 5/372 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 +Y + + ++ R ++ + + S+ Sbjct: 259 AYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGRVAIGLASSFNAQHRLGID 318 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI--VRNNNDMVVYTSDGTTLFET 230 +N A + + + + + IS + + ++ + Y TL Sbjct: 319 LNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALTTSDYRLQYDGSSYTLTRV 378 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 R ++ ++ TV + + S G + + I D + Sbjct: 379 SDRA-SWTVVDGQTVDGVTLSLSGTAAAGDSFLIRPTVAGASQFAVAITDPAKIAAAAPI 437 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 A +S A D Sbjct: 438 RTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTLSDGAGFSTTYAPGATIS 497 Query: 351 LR--DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + ++ + N ++ + Sbjct: 498 FGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSANTLGNGTISYQGAYSQFV 557 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + + + + N GVNL EE + L++ +Q+Y + K++ Sbjct: 558 SQIGNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNLLRYQQAYQAAAKVMQVA 617 Query: 469 DKMLQTLLEGVK 480 +M LL + Sbjct: 618 SEMFDALLTIGR 629 >gi|238762354|ref|ZP_04623325.1| Flagellar hook-associated protein [Yersinia kristensenii ATCC 33638] gi|238699339|gb|EEP92085.1| Flagellar hook-associated protein [Yersinia kristensenii ATCC 33638] Length = 463 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 60/482 (12%), Positives = 148/482 (30%), Gaps = 41/482 (8%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQRSE 58 AQ A ++ N+ N + Y R+ + + V V + Sbjct: 13 IAQTGLQAAQAGLSAAAMNLSNVNTPGYSRQRAEQSAVSTGGNNAYSAGNGVNVDAFKRL 72 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 ++ SS Q+ + E D + +SL S N Sbjct: 73 SEQYLVSEGWKASSNHQYFSASQNALSKLEHSLGD--KETGLAAGMRAFFNSLSLGSNNP 130 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S + V++ A+ + NFN + Q+ + + IS + + N I Sbjct: 131 SSPAYREQVVNEAKSLALNFNYFHQSAQEQKQVIATQRSAIISQVNGLTQSINEYNQKIV 190 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + DQRD L+ K+SE++ ++ + + +G L Sbjct: 191 KLGSDGTNTNVLQDQRDQLVNKLSEMVDVNVTKGTDGGYNISMKNGLPLINGQTVATLAL 250 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 S + + +S + + + ++ ++ ++ + MA++L Sbjct: 251 NTGSAQPQIDIH------FAGNSTKINMSCGASLGSINNYEQGLLKETESIVQGMAQLLT 304 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + G + + Sbjct: 305 TEVNTQLAAGYDLGGAAGSALFSFDASNPAGMLSVTDIKPSEL----------------- 347 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + G ++ +K+ + + + +G + SD+ Sbjct: 348 --GFSDNATNVGNATNLHALLALKDKSITISGI----GQTSFSDANTALVGKVAFTSSDN 401 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ V N + + + GV+ EE + +++ ++Y + K+I +++ L Sbjct: 402 KQSITQTKNVLNSVILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLAL 461 Query: 479 VK 480 ++ Sbjct: 462 MR 463 >gi|297570285|ref|YP_003691629.1| flagellar hook-associated protein FlgK [Desulfurivibrio alkaliphilus AHT2] gi|296926200|gb|ADH87010.1| flagellar hook-associated protein FlgK [Desulfurivibrio alkaliphilus AHT2] Length = 870 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 58/443 (13%), Positives = 129/443 (29%), Gaps = 14/443 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 L V N A+ + N+ N D Y R+ + V+ Sbjct: 3 GLTHVLNTAKQALLTQQRSIQVTGHNVANVDTPGYSRQTHNIRANHAVQMGNALLGGGVS 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 T + + SS +G + Q + E + ++ + +++ +S Sbjct: 63 PDTITRSYDQFMVERITRQSSLMGNLQAQQQSLRVVEPIF-NEARGLAMNDLLNQFWNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S N + V+ N + +F T E+ + R+D I+ + ++ S++ Sbjct: 122 QELSDNPESLAARQNVLQNGHLLSDHFKTMNDEIIRARSDIGTNIDTAVGDINSLTSQIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I +K +A+D DQRD L+++++ ++ IS N V ++G L E Sbjct: 182 ALNSRITSAEVAKAEANDLRDQRDNLVKELAGLVEISHFASKNGTYTVLMANGHPLVEGD 241 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N S ++ Q G ++ ++ + +LD Sbjct: 242 EAWQVSWSDNQLNWVSTDGSGKKVSRPLTGAQLGGKMGGWLEIHSELAPGNPNNYAGRLD 301 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A LI ++ D+ + Sbjct: 302 ALANALIRELNQVHSTG---SGTVKFADQLVGGDIGRPTSVTTGTVATGTASRNIAAGAI 358 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + G + ++ N+ + + Sbjct: 359 QINGLDIGAINGAFPVHGLATTKAANTVEAINQADTGVSARLTTQANGVAITEADLNAVS 418 Query: 412 EKNRSDSHDLHMKSQVVFNHISE 434 + + V +++ Sbjct: 419 AGDSFSFTVNGEEITVTLSNVDG 441 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 47/374 (12%), Positives = 102/374 (27%), Gaps = 25/374 (6%) Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 E V + + A + + + E I+ + N A + DA Sbjct: 497 EAAVGDGSNGAATNALLFRNTNAGDESSITIDNLIFTPDDEDNPAGLSASMLGLDALAGE 556 Query: 192 D-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 D + + L + I + T + Sbjct: 557 TIVADADHNTGQVTLFSDQRYTIKAGVDDTILAQLGLHDKSDDGITGNGRIAVTPDPLED 616 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + + G + +I +P E A + + Sbjct: 617 KVLLTGFKYGDELNTEDGSFEIWLYSADGSLALPEPVTVSLERAYSANDAAQAINQAILA 676 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETIC-VNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + D + + + + + ++ S ++ F + Sbjct: 677 AGGTSDGETPWVKASFDRQSGRFKLDPVAGHQFAFGADSSNFLQVAGLNTFFTGHSAGTI 736 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTN-----------------------VTLLEYARN 406 G +I D + + + +L + + Sbjct: 737 GVNRVIADNLDYMAAGKVGENGEIFPGDNRNALELSNLQHKDDIHFLGGRVSSLNGFYNS 796 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +G + + +V N ++E GV+L EE++ LIK + +Y + +LI Sbjct: 797 LVGDIGNKGRTIDRNVEFNTLVLNQMNEMRDTVSGVSLDEEMANLIKFQHAYTAAARLIS 856 Query: 467 FTDKMLQTLLEGVK 480 +D+ML TLL+ V+ Sbjct: 857 TSDEMLVTLLDTVR 870 >gi|293409448|ref|ZP_06653024.1| flagellar hook-associated protein FlgK [Escherichia coli B354] gi|331662488|ref|ZP_08363411.1| flagellar hook-associated protein FlgK [Escherichia coli TA143] gi|331672601|ref|ZP_08373390.1| flagellar hook-associated protein FlgK [Escherichia coli TA280] gi|291469916|gb|EFF12400.1| flagellar hook-associated protein FlgK [Escherichia coli B354] gi|331060910|gb|EGI32874.1| flagellar hook-associated protein FlgK [Escherichia coli TA143] gi|331070244|gb|EGI41610.1| flagellar hook-associated protein FlgK [Escherichia coli TA280] Length = 547 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|239817151|ref|YP_002946061.1| flagellar hook-associated protein FlgK [Variovorax paradoxus S110] gi|239803728|gb|ACS20795.1| flagellar hook-associated protein FlgK [Variovorax paradoxus S110] Length = 652 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 59/420 (14%), Positives = 130/420 (30%), Gaps = 17/420 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS+ F + + A + N N Y R+ + + + Sbjct: 1 MSM---FQTGLSGLSVARSALMTTAHNTANVYTAGYSRQTALVSSNGGTTTGAGFIGNGA 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + L+ +A S + + AD T + S Sbjct: 58 RVTTVQRSYDGYLTAQLNGAEAAGAALASYGSQINRIDSLLAD--KTAGLTPLMQSFFAS 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + ++ + +I A+ + F + + + + + +IE + + ++ Sbjct: 116 VQGVANTPADPAARQQLISAAQTLANKFRATDQYLTDLNGSVNDQIEGSTGQINTYAKQI 175 Query: 171 TVVNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N I A +D +DQRD L+ ++ +I+G+ + +++ V+ +G TL Sbjct: 176 ASLNQQISQLSAMAGGQPPNDLMDQRDQLVSELGKIVGVKVLEQDSGQYNVFIGNGQTLV 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ T ++ + VS + G + LL R + QN Sbjct: 236 LGDRAAQLQAVSSAADPTRKAVALVGLTGTVSELNDDVIAGGSLGGLLAFRAETLTPTQN 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + +A L F+E+ + + V G + + ++ Sbjct: 296 AVGRLAMALGSEFNEQHKLGVDLNGVLGTDFFSQATAGVFSKARNGGNMVLGASVADTSQ 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 D K + D + FD V+ + T + Sbjct: 356 LTTSDYSVQVKDVAGTLTYSVTRLSDKQPMGDFTSFPASFDGVSLSPASGTAQAGDSFLV 415 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 41/437 (9%), Positives = 114/437 (26%), Gaps = 2/437 (0%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V + + D+ + + ++ + + + ++ Sbjct: 216 VLEQDSGQYNVFIGNGQTLVLGDRAAQLQAVSSAADPTRKAVALVGLTGTVSELNDDVIA 275 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + +++ +G+ + E + + D + + Sbjct: 276 GGSLGGLLAFRAETLTPTQNAVGRLAMALGSEFNEQHKLGVDLNGVLGTDFFSQATAGVF 335 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + R + V+ ++ + + + S + + Sbjct: 336 SKARNGGNM-VLGASVADTSQLTTSDYSVQVKDVAGTLTYSVTRLSDKQPMGDFTSFPAS 394 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 DG +L + + + + + ++ +A P KA+ Sbjct: 395 FDGVSLSPASGTAQAGDSFLVQPTRTGARDMDVLVRD-TAKVAAASPLATGKAVGNKGTG 453 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + +A L G+ + A N+ + A + D + T Sbjct: 454 ALSPAVVDSGYLATPLAGTVTLAYDAAANTLSGFPATSAVTVTLADGTSTNYAAGTAVPY 513 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 S + + + ++ ++ + A T Sbjct: 514 TAGASIRFDGIEVKLSGAPADGDTFTIGKNAGGVSDGSNALRLGALQRKTAMDGGTSTFN 573 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + + + V I S + GVN EE + L+ +Q Y + Sbjct: 574 GAFAKLVSEVGNRAMEIRVASATQEGVTGQIRASRDSISGVNQDEETANLLMYQQMYQAN 633 Query: 462 NKLIMFTDKMLQTLLEG 478 K+I M +L Sbjct: 634 AKVIQTASTMFDAILGI 650 >gi|332298237|ref|YP_004440159.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] gi|332181340|gb|AEE17028.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] Length = 463 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 46/491 (9%), Positives = 114/491 (23%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53 ++ + N + I N+ N + + R V Sbjct: 1 MMRSLYSGVSGMQNHQTRLDVIGNNVANVNTTGFKRGRVNFQDMISQQLSGAAKPTTEVG 60 Query: 54 TQR----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + + + Sbjct: 61 GVNPKEVGLGVMVASIDTVFTQGNLQSTGVATDVAIQGNGFFVLKNGEETFYTRAGAFGL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + NT+ I K+ N+ + Sbjct: 121 DSDGTLVNPANGLRVQGWMAQEANGEMILNTAGSPEDLIIPVGSKDPAKATQNVNFACNL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + ++ + S D++ S + N + + V + Sbjct: 181 NKNTPEILEGASES-----------DIMKGTWSTEQKVYDSFGNEHMLSVAFARVPGNPN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + N+ + DGV + + P Q Sbjct: 230 QWQATVLIDPDNADVTQTRVGLGTTDGVANTFLVNFDNTGSLQSVTDSAGNVTNPTGQIV 289 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + +++ P + I Q S S Sbjct: 290 LQ--------TSFTVTDSNPDADGNPYRQTMNINLGTIGSQQHTI-------TQSASQSS 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + N+ +A + L + N Sbjct: 335 TKAYYQDGYTMGYLDNFKIDSSGIITGVYSNGTNRVLGQIALATFSNQGGLEKAGDN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ + V+L E+ + +I ++ + S+K I D Sbjct: 393 YVQSNNSGLANIGTSGIAGKGSMLAGSLEMSNVDLTEQFTDMIVTQRGFQASSKTIQTAD 452 Query: 470 KMLQTLLEGVK 480 +L T++ + Sbjct: 453 TLLDTVMNLKR 463 >gi|254932015|ref|ZP_05265374.1| flagellar hook-associated protein FlgK [Listeria monocytogenes HPB2262] gi|293583567|gb|EFF95599.1| flagellar hook-associated protein FlgK [Listeria monocytogenes HPB2262] gi|328475667|gb|EGF46416.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 220] Length = 506 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 159/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-------CVN 341 +++ + L + + N I D +K N + Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRLLEKFPG 346 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES S+ Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|91776315|ref|YP_546071.1| flagellar hook-associated protein FlgK [Methylobacillus flagellatus KT] gi|91710302|gb|ABE50230.1| Flagellar hook-associated protein [Methylobacillus flagellatus KT] Length = 645 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 145/453 (32%), Gaps = 17/453 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + +FN + N A ++ NI NA+ + Y R+ + + V Sbjct: 1 MSNIFNIGKTALNAAQVGISTTGHNIANANTEGYSRQVIVQSAGQAQAWGFGYLGNGTQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + + + + +S + + + + + I S+ Sbjct: 61 DTVKRVYNELLSRQI--SNSQSIASGINTQLSNINHINNMLADAEAGLSPAIQDFFASIN 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S ++ + ++ AE + FN + +++ + ++ ++ + + E+ Sbjct: 119 DLSSAPNDPASRQAMLSTAEALSSRFNGLGSRLLEMQGSVNAQLNASVNTVNHYAKEIAR 178 Query: 173 VNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N+ I T S +D LDQRD L+ +++ I + IV++ N V +G L + Sbjct: 179 LNEVIDVATTSTGQPPNDLLDQRDQLVLALNKEIKGTVIVQDGNRYNVSIGNGIPLVNGL 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + G S ++ G I L++ R + QN L Sbjct: 239 KSYSLTTVDSPTNPGRLEVAYQA-GATTSILAEQSLQGGVIGGLIEYRRESLDKAQNTLG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A L SF+ + + +V G + N + ++ Sbjct: 298 QIAVALAQSFNIQHQQGLTNGDVQGGNFFNIPSPQVNASSHNTGSADLASSIVDASLLTA 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG--INTNVTLLEYARNSIG 409 D +++ L+ F G + ++ N+ Sbjct: 358 SDYRLRYDGSNYSITRLSDNTVQTFSSLPQTVDGVSFSLAGGSMSAGDQFMIRPTANAAA 417 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 L D+ + + + S + GV Sbjct: 418 DLSVAVKQIEDIAAGAPTITTTAAGSNT-GSGV 449 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 33/336 (9%), Positives = 84/336 (25%), Gaps = 4/336 (1%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + + + + + A AS A D+ + D I+ Sbjct: 313 QGLTNGDVQGGNFFNIPSPQVNASSHNTGSADLASSIVDASLLTASDYRLRYDGSNYSIT 372 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + + ++ V DG + ++ + + + + + Sbjct: 373 RLSDNTVQTFSSLPQTV---DGVSFSLAGGSMSAGDQFMIRPTANAAADLSVAVKQIEDI 429 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 A A V+ + + L F+ P Sbjct: 430 AAGAPTITTTAAGSNTGSGVISGARVSASYASSPLASPFTLSYNSGS-LGGFPAGEPITV 488 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 TI + + + + S + A + ++ Sbjct: 489 TTSAGTTTTYPAGSTIPYSAGAAISVAGISFSLSGAPADGDQFTIAATTSNAAGDNRNAL 548 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + + + + ++ + + + GV Sbjct: 549 QLAALQNTKTMLGGTASYQGTFNQLVSYVGNRTRELQVTGAAENTLLAQSITAQQGESGV 608 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 NL EE LI+ +Q+Y + K++ + +T+L Sbjct: 609 NLDEEAVNLIRYQQAYQAAGKVMQIASTLFETVLSI 644 >gi|330808201|ref|YP_004352663.1| flagellar hook-associated protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376309|gb|AEA67659.1| flagellar hook-associated protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 688 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 53/445 (11%), Positives = 129/445 (28%), Gaps = 17/445 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ N + + + + NI N D Y R+ T+ T T+ Sbjct: 2 SLLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQTVQTTKASNQYGNVFIGSGTTLAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + L +S Q + + +D ++K S+++ Sbjct: 62 VRRVYNAFLEAQLKTTTSLNSDAAAYQGQITPLDSLLSD--SGTGLNGALTKFFASVQNV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + +D + ++ +A+ + FN+ A ++ + + + + + + + + +N Sbjct: 120 NAKPGDDASRQLLLSDAQALSNRFNSVANQLTEQSQNINGNLSNMVDQVNNLAATVAQLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + + +D LD R ++++S G + + + +Y G L + Sbjct: 180 KKIAEVSNAGGAPNDLLDARSETIRQLSTFTGTQVVENGS-SLDIYLGSGQPLVMGNIVN 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + I ++ S + S + G+I L++ R +V+ N+L +A Sbjct: 239 TLQAVPDKNDPGRIG--IQLNSGSSSMDLTSVLTGGEIGGLMRYRSTVLDPAMNELGRVA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 V+ + + G + S N N + Sbjct: 297 LVVADQMNSIQASGIDMNGAFGSNLF--TNINSAAQISQRSVASLNNSAGSGNFNIAIKD 354 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + V +G + D + N Sbjct: 355 SGKLTTNDYKVTFTSGTDYTVQRLPDGTSMGAFNTATTPPPVIDGFSMTFANGTAAAGDT 414 Query: 415 RSDSHDLHMKSQVVFNHISESYSNT 439 + + + + Sbjct: 415 FKLTPTRNEAANIKTEMTDSKRLAI 439 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 38/445 (8%), Positives = 110/445 (24%), Gaps = 19/445 (4%) Query: 38 RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 T + + D ++ + Q + + + Sbjct: 260 SSSMDLTSVLTGGEIGGLMRYRSTVLDPAMN-ELGRVALVVADQMNSIQASGIDMNGAFG 318 Query: 98 NSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 ++ I+ + + N + I ++ ++ N Sbjct: 319 SNLFTNINSAAQISQRSVASLNNSAGSGNFNIAIKDSGKLTTNDYKVTFTSGTDYTVQRL 378 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + V++ A D L +E I T + ++ Sbjct: 379 PDGTSMGAFNTATTPPPVIDGFSMTFANGTAAAGDTF----KLTPTRNEAANIKTEMTDS 434 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + G + + ++T++ + + N K+ Sbjct: 435 KRLAIAAPLGAAIVPGGSGTLTIPANGQPSMTTKLDIYDAATTTIVQNGIKNSMPVKVVF 494 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 D +Q L+ + + + Sbjct: 495 GATSADGTSQAYQ---------LLDAKGVQISNGTIKPGESNTLSLSVPLKDASGAPIMD 545 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 S V + S + + + + + + Sbjct: 546 SSVPPVQRTVTFDMSIAGAPSNGASINVSLSQPGSLDNRNGTVLAGLQTAKTVD--TGSS 603 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + ++L + + + + + + ++ + + GV+L EE L+K Sbjct: 604 SKGISLNDAYGKLVEGVGAKAAQGKLDSAATGAILDNAKTARDSLSGVDLDEETGNLVKF 663 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I ++ TL+ + Sbjct: 664 QQYYTASSQIIKAAQQIFSTLINSL 688 >gi|237653577|ref|YP_002889891.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T] gi|237624824|gb|ACR01514.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T] Length = 660 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 54/408 (13%), Positives = 127/408 (31%), Gaps = 14/408 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N + + + NI NA + R+ V Sbjct: 1 MASLLNIGLTGLSASQAYLNTTSHNIANAATPGFHRQTVTQEARDPQYSGGAFFGTGTGV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + + S + F + + + AD + T +++ +L+ Sbjct: 61 TGVARSYSQLLEGQVLSADSRRAEYAAYSQFISQLDNVLAD--ADTGLTPALNEFFGALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + + ++ + + + F T + +I + E+ + ++ + + + Sbjct: 119 NVTSNPTNVAARQALLSSGDTLSARFRTLDGRISEIAEGVETEMRSTLESINGYAAAIAE 178 Query: 173 VNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I + A+D LDQRD + +++ ++ +ST+ + + V+ G +L Sbjct: 179 LNERMVISRTGGAGSAANDLLDQRDQAIAELNRLVKVSTVEQRDGSTSVFIGSGQSLVMG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + VV S V G + LL R Q L Sbjct: 239 NRAKQLELGDQLDENGRSMITVRANSGVVEPLAESLVGGGTLGGLLAARREGTASAQRSL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L F+ + + + E G + G+S I S Sbjct: 299 GLLATTLATEFNSQHALGLDLEGRLGGDFFRIGGVRVDPSDSGLSVRIDPGQVSSLTGSD 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + L ++ P + + + T Sbjct: 359 YSLRYDGAAFQLTDLATGNAVPAAQMQLVTEADGSTTIRAQGLVFTGA 406 Score = 96.6 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 37/324 (11%), Positives = 82/324 (25%), Gaps = 11/324 (3%) Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + ++ I S D+ + D +++++ + + +V TT+ Sbjct: 337 PSDSGLSVRIDPGQVSSLTGSDYSLRYDGAAFQLTDLATGNAVPAAQMQLVTEADGSTTI 396 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + V++ AV R + Sbjct: 397 RAQGLVFTGARSTLTEPAFVYPTRYTAGAIEVANRDPRAVAAAAPVLASPTRGDGSSLRI 456 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 Q ++R + +E A + + Sbjct: 457 EQSGLLSRGSAAAGTELGLPALKYTFNAVDKRFELDAAAPGAAGWPATLAYDPATSAAGE 516 Query: 348 PSFLRDGGS-----------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 L G + + N G D N + +G Sbjct: 517 SFTLEGPGGVRLELKISGTPAANDVIALADNKGGVADNRNAALLGALQTDKLLFGSGGQA 576 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 TL + + + + + S GVNL EE + L++ +Q Sbjct: 577 TATLNNAYAQLVAKVGSKTREVQAGERTQTSLLDQAKASRDAVSGVNLDEEAANLVRFQQ 636 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 SY + K++ ++ +L + Sbjct: 637 SYQAAAKVMGVAQRLFDEILAIAR 660 >gi|206603517|gb|EDZ39997.1| Flagellar hook-associated protein (FlgK) [Leptospirillum sp. Group II '5-way CG'] Length = 561 Score = 144 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 55/443 (12%), Positives = 126/443 (28%), Gaps = 14/443 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS +L + N ++ ++ +NI N + Y + + Sbjct: 1 MSGVLGILNIGKSGIEANEAGLSTAGQNISNVNTPGYTVENVQFDQTQPNHGSPGMVGNG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V R + D + + +G + + + N + IS+ Sbjct: 61 VRATGIRRVVNSFLDAQMIRQKTRMGFWESSRLSLSELDTYFTH-AQNQGLSKDISRYLS 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + E + + + T+I + + ++F+ A + R + + +S + LS+ Sbjct: 120 TWEVVANHPLDRSARATLITYGKNLAEDFHQMASLYSQTRNRLGELLTSSVSTVNADLSK 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I A + +DQR L+ +IS + N + ++ G Sbjct: 180 IAHLNREILRAEAGGESPNTLIDQRQQLMVQISTLTNAHFFTDKNGAITLHL-GGQAAIT 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +S + + GKI L +RD VP+ + Sbjct: 239 DIDSGRLEAVFDSSRNGYRILIHPPGHSGPPIDITDRLHGGKIGGYLDVRDKKVPLLEEH 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A +I + ++ + T+ N + Sbjct: 299 LDSLAHGIINHVNALHVQGFGLNGKTNQNFFLPTTTVEAQGSLPAGVTLTANAVNPDEAT 358 Query: 350 FLRDGGSVSKKFLW-NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 D + + + ++ + + V+G+ N Sbjct: 359 SPVDVTVSRSMIVVRDSSGKILRKESLSQGTGTVRVSGYLIRVSGVGKNEEAHVRVSGGN 418 Query: 409 GWLEKNRSDSHDLHMKSQVVFNH 431 S + + Sbjct: 419 DTRGAALSMQVNALDPEDLAAGQ 441 >gi|301023269|ref|ZP_07187066.1| flagellar hook-associated protein FlgK [Escherichia coli MS 69-1] gi|300397114|gb|EFJ80652.1| flagellar hook-associated protein FlgK [Escherichia coli MS 69-1] Length = 547 Score = 144 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 58/420 (13%), Positives = 133/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ T V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMTQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|85706142|ref|ZP_01037237.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] gi|85669306|gb|EAQ24172.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] Length = 448 Score = 144 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 43/489 (8%), Positives = 128/489 (26%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N + N + + A+I NI N+ Y R + + + Sbjct: 16 MTISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESLVISGRGGSYSAGGV 75 Query: 56 RSENKNMFDK--VLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSL 111 R+ + + D+ + + S+ + F A ++ + R Sbjct: 76 RASTQRLIDQGGSIVSSSNPTDLAVRDRGFLPVARVTDLTVSNGDPQMLLTTTGSFRTDP 135 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S +L + + + ++ ++ ++ + ++ +++ Sbjct: 136 QGRLVTESGLVLLGWPANPDGTIPEFSRDTSGGLEPVQINVNQLTGEPTTSI----KLGI 191 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + ++ D L + + Sbjct: 192 NLPATDTRFDSIGDPQQLSIEYFDNLGTSENISLQF---------------------VPT 230 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + +T + + G V + + G + + + + Sbjct: 231 VATVGLSNEWTVILTDSAQGNALIGEYVLTFDDARETGGTLLDVQTVTGGAFDPTTGTII 290 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + P + Q + + L Sbjct: 291 VDVAGGPIEINIGRPGTSD-----------------------------GLSQLSDSFAPL 321 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + + ++ P+ + ++ + + Sbjct: 322 SIAKDGSPVGNMTSAEVDANGFVRASFDTGVSRIIYQVPLVDLPNPNGMVSMDQQ--TYQ 379 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S S L I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 380 PSPDSGSFFLWDAGDGPTGDIVAFARQESATDVARELTDMIQTQRAYSSNAKVIQTVDEM 439 Query: 472 LQTLLEGVK 480 LQ ++ Sbjct: 440 LQETTNIIR 448 >gi|315281368|ref|ZP_07870006.1| flagellar hook-associated protein FlgK [Listeria marthii FSL S4-120] gi|313614985|gb|EFR88491.1| flagellar hook-associated protein FlgK [Listeria marthii FSL S4-120] Length = 506 Score = 144 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 80/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL +S GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ S W + + + Sbjct: 357 GGVDHSIDTLGTSTYVTDVSDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|284920905|emb|CBG33968.1| flagellar hook-associated protein 1 [Escherichia coli 042] Length = 547 Score = 144 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGTGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|332161328|ref|YP_004297905.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605248|emb|CBY26746.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica subsp. palearctica Y11] gi|325665558|gb|ADZ42202.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861098|emb|CBX71365.1| flagellar hook-associated protein 1 [Yersinia enterocolitica W22703] Length = 554 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 143/400 (35%), Gaps = 14/400 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + + A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +V E L A + + + + ++ +N+ + + + Sbjct: 60 SVTGVNREYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ N +D KTV+ AE +V F + + ++ + +++I + + + ++ Sbjct: 118 LQNLVSNAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKISDSATQINNYAEQI 177 Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I +S + + LDQRD L+ ++++I+ ++ ++ + V + G +L + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDTYNVSFAGGLSLVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +S T + S + G + L+ R + +NQ Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYNRGSGDTMEIDESRLTTGSLGGTLKFRSEALDSARNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L ++A V+ SF+ + ++ G + K + + ++ Sbjct: 298 LGQLALVMADSFNTQHKAGFDANGDAGTDFFSFAQPTALKNAKNQGDAGLTVAYTDTSKV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 D W V L+ + N + Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPTTAGTDANGKPTLN 397 >gi|290894002|ref|ZP_06556977.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J2-071] gi|290556448|gb|EFD89987.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J2-071] Length = 506 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 77/520 (14%), Positives = 160/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342 +++ + L + + N I D ++ N + + Sbjct: 287 KIETFSNGLAKALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPG 346 Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVNDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES S+ Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|255523748|ref|ZP_05390714.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] gi|255512617|gb|EET88891.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] Length = 649 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 90/241 (37%), Gaps = 19/241 (7%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46 MS L N +++ + NI NA+ Y R+ + Sbjct: 1 MSGLFGTLNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V V T + D + GQ + F + E + ++ + + Sbjct: 61 PGQLGTGVEVTTIDRIRDSFLDYQIRVEKGVDGQYKGRDKFLSQLENIM-NEPTDTGISK 119 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I D+ + N E V N + + N + E++K++ + I+ ++ + Sbjct: 120 DIGNFFDAWNTLGTNAKESNSRSIVAQNTLTLTTDLNHTYNELEKLKENTQTVIKDDVFD 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L ++ +N I + ++ +D +D+RD+LL ++SE GI+ + V TS Sbjct: 180 INSKLKQIDQLNREIIQVRVAGNNPNDLMDRRDLLLDQLSEKFGITVDRKQFEGNDVTTS 239 Query: 223 D 223 D Sbjct: 240 D 240 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 1/227 (0%) Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 I+ ++ KG I + + + I + N Sbjct: 423 IESQEKNAVVDVTDSKGNIIEVNNFFVNADAQKKGVYTGTDLSKIEDAEADITAGNITIN 482 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + IK T + LRD + + D Sbjct: 483 QAIIDDPMKIKTAAKYDGNNKPLTGESDGNRAVAVETLRDSLMTIQNIDPDNSTKTKKSD 542 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ + N + + + +TL Y ++++ L ++ + + Sbjct: 543 FLDGIFE-VNSKLGVNAIINKTSGMTLDSYFKDTVDRLGIQEQEAKKTVTNQASLLAGFT 601 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +S + GV+L EE++ L++ + Y + KLI D++L ++ G+K Sbjct: 602 QSRDSVSGVSLDEEMANLVQFQHCYQANAKLISTVDQLLDVVINGLK 648 >gi|206974984|ref|ZP_03235899.1| putative flagellar hook-associated protein [Bacillus cereus H3081.97] gi|206747003|gb|EDZ58395.1| putative flagellar hook-associated protein [Bacillus cereus H3081.97] Length = 415 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 59/473 (12%), Positives = 142/473 (30%), Gaps = 71/473 (15%) Query: 20 QFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKNMFDKVL 67 + +N+ N YVR+ V + + K Sbjct: 2 GLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDEVKTKQF 61 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + S + S + E M N S + + ++ +KN + T+ Sbjct: 62 NDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQSNYYDTL 120 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 I + N A+ + + A ++IE ++ R L N I A Sbjct: 121 ISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQAGTQVP 178 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 + LD+RD ++ ++S+ + I + N + L T Sbjct: 179 NQLLDERDRIVTEMSKYVNIEVSYESMNPNIASVRMNGVL----------TVNGQDTYPL 228 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + N V + G IK+ + + + ++ L+E+ + + Sbjct: 229 QLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMGSVKNQVNTVM-- 285 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + ++ + +NP++ ++ S ++ + K Sbjct: 286 ------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKLAGITDE 327 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ I + ++S+ + Sbjct: 328 DYKDG-------------------------LSYKNALDQFIVKVASDKSEVNGYQKIHGD 362 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 363 LLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 415 >gi|146278769|ref|YP_001168928.1| hypothetical protein Rsph17025_2736 [Rhodobacter sphaeroides ATCC 17025] gi|145557010|gb|ABP71623.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 474 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 52/491 (10%), Positives = 126/491 (25%), Gaps = 28/491 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53 M++ + N + + ASI NI N+ Y R D + Sbjct: 1 MTISSSLNAGVAGLYANATKLASIADNIANSGTYGYKRADADFESMVITQSANSGTYSAG 60 Query: 54 TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRD 109 R+ + ++ + + S+A+ + + + + + + + Sbjct: 61 GVRANTLRLVEERGAIVSTSNAMDIAISGRGMLPVVRETSLGSTTGNDALLMTRTGSFKT 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 K + +L + V S ++Q + A++ + + ++ Sbjct: 121 DPNGVLKTDTGLVLLGWPANADGTVPTMSRDSISQLQPVVIAANQTAADPTTRMNLGVNL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + F + ++S I T+ ++ + Sbjct: 181 PAERTKLGASASPLTVAVEYFGNLGTSETLQVSYYPTIPTVAADSPTNKWTMVIQDSASS 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 I +E S + + + G + + D Sbjct: 241 DRTIAI-YELQFSDARSGGGTLLDLSGATPAGSPAVKPLSTFSPVAGVSFDVDPYGAGTP 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 A + + L G + Q + + Sbjct: 300 TASPAYNSATGQVTLAVGGSAANTLD--------------LTLGRPGSASALTQVSGDFA 345 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + S + + Y F + P+ + L + Sbjct: 346 QTGITKNGSPVGNLTGVEIDAGGLIKATYDTGFTRVIYQIPLVDVPNYNGLTALNNQTFA 405 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S S L + ++ +EL+ LI+ +++Y+ + K+I D Sbjct: 406 I--SPDSGSFYLWDAGDGPTGDVVGYAREGSTTDVAQELTNLIQTQRAYSSNAKIIQTVD 463 Query: 470 KMLQTLLEGVK 480 +MLQ + Sbjct: 464 EMLQETTNLKR 474 >gi|218461125|ref|ZP_03501216.1| flagellar hook-associated protein FlgK [Rhizobium etli Kim 5] Length = 313 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 1/308 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVQINRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L + + + Y SP+ Y+ ++ L+++ Sbjct: 61 DALLRQYLKTSSQDSAQQTLLGGLEDLKSIMGGNDYETSPSTYLGVFQEKLQAFRTTPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA+ADKEI + L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRANADKEIATAVDKLNTLLSQFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TAS DA LD+R+ +L++ISEI+G+S R+NNDMV+ T DGT LFETVPR + F+ Sbjct: 181 TASGTDASGALDEREKVLKQISEIVGVSATTRDNNDMVLSTPDGTILFETVPRKVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + YT + N ++IDGV + +GS G +++LLQIRD + P FQ QLDE+AR L+ Sbjct: 241 DVYTASIVGNSVYIDGVALPLGKGSTTTGQGSLQSLLQIRDEIAPNFQKQLDEIARGLVS 300 Query: 300 SFSEKDPI 307 F E++ Sbjct: 301 LFKEQNTA 308 >gi|257457611|ref|ZP_05622778.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] gi|257444997|gb|EEV20073.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] Length = 463 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 46/491 (9%), Positives = 118/491 (24%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + N + I NI N + + R R + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPTEEVG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + S Sbjct: 61 GVNPKEVGLGMMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + E ++ + + + ++I+ + + Sbjct: 121 DRDGTMVNPANGMRVQGWMAQ-EVDGTRLINTSAQTEDLIIPIGQKIDARATTSVNYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + + ++ VL + + +++ + S Sbjct: 180 LDKRLPELP----------ENANRAQVLESTWTTEFKVYDTFGETHELNLSFSRVPGTQN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +N + N+ + + +G + SV N Sbjct: 230 QWLATVNVDPENAEATETRTGVGTTEGTGNTFTVTFDNYGH--------LASVTDTAGNA 281 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 E +VL+ + P D I Q+ + Sbjct: 282 SAEAGQVLVQVSYNVPGATAGEDGAPVRHTFDINLGEIGTSRNTI-------TQFAERST 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + + +AG L + N Sbjct: 335 TKAYEQDGYAMGYLENFKIDQSGIITGVYSNGVSHEIGQLAMAGFANQGGLEKAGEN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ + + V+L ++ + +I ++ + K I +D Sbjct: 393 YVQSNNSGIANITTSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD 452 Query: 470 KMLQTLLEGVK 480 ML+T+L + Sbjct: 453 TMLETVLNLKR 463 >gi|90408060|ref|ZP_01216231.1| flagellar hook protein [Psychromonas sp. CNPT3] gi|90310817|gb|EAS38931.1| flagellar hook protein [Psychromonas sp. CNPT3] Length = 473 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 49/489 (10%), Positives = 120/489 (24%), Gaps = 34/489 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A S NI N + + N V+ Sbjct: 2 SFNIALSGISAAQTDLDSTANNIANVNTVGFKESRAEFESVYANSLFTNSKTKVGDGVST 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L + + F A + D + + E++ Sbjct: 62 AAVAQQFHQGSLKFTQNPLDLAITGSGFFATAGNLEDRDLS----YTRSGTFKLNSENFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + L ++ ++ + +Q EI + ++ Sbjct: 118 VDNSGNYLQAFPVNEDGTSSSVSLSTTQPIQIPETAGTPIPTSEIGITLNLPAGDKALDP 177 Query: 176 ----AIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS--TIVRNNNDMVVYTSDGTTLFE 229 T + + D + + + N + T DG + Sbjct: 178 AKFDPDDPDTYNNATSVTIYDSLGESHITTTYYVKPENASYTGENQWITFVTVDGKPVDV 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +Y V ++ + + +S L Sbjct: 238 WDKAGGTGQVAGTYDVDADGDGVADGTPQAASYVDKDGNVHTGAVLKFDSVGAYKGSSPV 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + G+ Q + Q+ S Sbjct: 298 VLTF-----------QSLGVDDPSSAAGGDGAGVLSPGADGAQRFTLNFKTPTQFSSAFE 346 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + ++ + L + Sbjct: 347 VTSLEQNGLTVGRLTGVEIGKDGLVKATYSNGTSQPLSRVSIVRFRNEQGLTQTGS---S 403 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W+ S + F ++ + VNL EL LI ++++ +++ + + Sbjct: 404 WIATQNSGEPLAGEANSGSFGAVNSAALEQSNVNLTTELVDLITAQRNFQANSRALEINN 463 Query: 470 KMLQTLLEG 478 + QT+L+ Sbjct: 464 TLQQTILQI 472 >gi|46906956|ref|YP_013345.1| flagellar hook-associated protein FlgK [Listeria monocytogenes serotype 4b str. F2365] gi|46880222|gb|AAT03522.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes serotype 4b str. F2365] Length = 506 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342 +++ + L + + N I D +K N + + Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346 Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHAIGTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES S+ Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|331646340|ref|ZP_08347443.1| flagellar hook-associated protein FlgK [Escherichia coli M605] gi|281178191|dbj|BAI54521.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli SE15] gi|330910896|gb|EGH39406.1| flagellar hook-associated protein FlgK [Escherichia coli AA86] gi|331045092|gb|EGI17219.1| flagellar hook-associated protein FlgK [Escherichia coli M605] Length = 547 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + ++ Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDTSAVL 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D W V LA + F + T + + Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418 >gi|226223336|ref|YP_002757443.1| flagellar hook-associated protein FlgK [Listeria monocytogenes Clip81459] gi|254824015|ref|ZP_05229016.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J1-194] gi|225875798|emb|CAS04501.1| Putative flagellar hook-associated protein FlgK [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593243|gb|EFG01004.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J1-194] Length = 506 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342 +++ + L + + N I D +K N + + Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346 Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES S+ Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|325274800|ref|ZP_08140828.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] gi|324100068|gb|EGB97886.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] Length = 440 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 53/485 (10%), Positives = 123/485 (25%), Gaps = 59/485 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55 FN + A++ NI N + T + ++V Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKSVIGTGV 61 Query: 56 R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ ++A A+ F AL + + E Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKEG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y N L + +++Q T +L+I +++ Sbjct: 115 YVVNAGGANLQGYAVGEDGKIIQGVLT----------------DLQIDTSNLTPKPTSLI 158 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + I + + + D + + + N + M Y Sbjct: 159 TEKINLNSGATAPSVTPFDPTNASSYNFTFNTPVYDSQGNEHQMNQYFIKDDVTNTWSMH 218 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++ + + A+ G + L I + + Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMAAGDVVGGLSIGEDKIFQL------- 271 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + G+ + QY ++ + + Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAVANADGVKLDMLGATQYNASSAEIAK 316 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ L + + +K +A L W E Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + I+ V+L EL LIK + +Y + K I ++Q Sbjct: 375 YASGVPVIGAPDTGTLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434 Query: 474 TLLEG 478 T+++ Sbjct: 435 TIIQM 439 >gi|317406195|gb|EFV86444.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans C54] Length = 558 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 71/429 (16%), Positives = 138/429 (32%), Gaps = 19/429 (4%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSEN 59 A N + A+ NI NA Y R+ M + + V V T Sbjct: 7 ALGGLNASQAGLATTGHNINNATTVGYNRQRVMISTAGAQATTNGYIGRGVQVDTVVRSY 66 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + K L + Q + + + AD ++ S+ + + + Sbjct: 67 DSFLYKQLVGAQGSGAQLQAQLDQVSQVNNLFAD--RTVGIAPGLTNFFTSMNTVASKPA 124 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI-- 177 + + ++ A + ++ +E+Q R + +I + + +L+ + +N I Sbjct: 125 DPAARQDLLGKANSLTTQIRSAYQEMQNQRLGLNTQITTTVEQVNSYLTRINDLNSQIST 184 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A + +D LDQRD + +++++IG++T + + + S G L Sbjct: 185 ARAKAGGNPPNDLLDQRDQAVSELNQLIGVTTYEQGDKLSISLASGGQALLSGDTVYPLQ 244 Query: 238 EKMNSYTVTSESNPIFIDGVVVS-----SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ V+ + + V GK+ LLQ R + + Q QL + Sbjct: 245 AVSSAKDVSRTVIAYTLPAGSGGKTVAVELNDAEVTGGKLGGLLQFRATSLDFMQAQLGQ 304 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA L SF+E+ ++ PG K S N + Sbjct: 305 MAVGLALSFNEQHRQGLDTAGNPGTDFFSIGKPQGVPNAGNKSGAQISGEFTNVNNINAK 364 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 D + V L + N D A + +T+ + W Sbjct: 365 DYEISFDGTNYMVTRLPEGTQVYNGPATGTPPTATLDLNAEMGVTLTIDSPPQAGDKWAL 424 Query: 413 KNRSDSHDL 421 D+ Sbjct: 425 SPTRDAARD 433 >gi|217965197|ref|YP_002350875.1| flagellar hook-associated protein FlgK [Listeria monocytogenes HCC23] gi|217334467|gb|ACK40261.1| flagellar hook-associated protein FlgK [Listeria monocytogenes HCC23] gi|307570244|emb|CAR83423.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes L99] Length = 506 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 78/510 (15%), Positives = 156/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V+ + + + + N P+ + Sbjct: 60 GVKVIDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ + W + + + Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|116872094|ref|YP_848875.1| flagellar hook-associated protein FlgK [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740972|emb|CAK20092.1| flagellar hook-associated protein 1-related protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 506 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIAADTDAAIQDLNTLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLGTMAGYAGISISAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272 + T S + S S G Sbjct: 237 VQGDETTEIMSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 KAL I+ V + L ++ L + +++ ++ E + L G+ + L Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPTDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356 Query: 333 GISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G + Y ++ S W + + + Sbjct: 357 GGVDHAIESLGTSTYVNDVSDFSIPIFTQSAGKWILNPAITNNAENKPFLGVIAPDIASL 416 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + I + + S S N +SES S+ GVN+ EE++ Sbjct: 417 KTDKNIQGTTFPNFMDGIITEVATDASKSSATLAADTQALNSLSESKSSLEGVNIDEEMT 476 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + Y + K + + M++ LL + Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|228933022|ref|ZP_04095885.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826623|gb|EEM72394.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 420 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61 A + +N+ N YVR+ + V + Sbjct: 1 MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSSEQKIGYGVQTLGVDRITDE 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + K + S + + S + E M N S + + ++ +KN + Sbjct: 61 VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 T+I + N A+ + A ++IE ++ R L N I Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + LD+RD ++ ++S+ I + N + L Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + N + G I++ + + + ++ L+E+ + Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + +NP++ + S ++ + K Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ + + + ++S + Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 362 QKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420 >gi|254853091|ref|ZP_05242439.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL R2-503] gi|300764517|ref|ZP_07074510.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes FSL N1-017] gi|258606440|gb|EEW19048.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL R2-503] gi|300514871|gb|EFK41925.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes FSL N1-017] Length = 506 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342 +++ + L + + N I D +K N + + Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346 Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397 + + + I + S K + + N Sbjct: 347 VTRSGDTLTIGGVDHTIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406 Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 T + I + + S S N +SES S+ Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVN+ EE++ +++ + Y + K + + M++ LL + Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506 >gi|222112279|ref|YP_002554543.1| flagellar hook-associated protein flgk [Acidovorax ebreus TPSY] gi|221731723|gb|ACM34543.1| flagellar hook-associated protein FlgK [Acidovorax ebreus TPSY] Length = 672 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 49/408 (12%), Positives = 122/408 (29%), Gaps = 17/408 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MSL N + NI N Y R++ V Sbjct: 1 MSL---LNVGARALLANQVALQTTGHNIANVSTAGYSRQNVAMETVQGQFTGSGYIGNGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + + + A + + + + + I+ + +S Sbjct: 58 QVATILRNHNELLTRQAAAAQAVQAGDTVRAERLGQLQDVFQ--GGTSGLGAAITDMLNS 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + ++ + +E+ +SA ++Q+I +++++ + + + + Sbjct: 116 LADVVSSPTDITARTVTLTRMDEMAARMRSSAEQLQEIAYSVNEQLQNDATRVNSLAKSI 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN+ I + +D LD+RD L++++++ I + I ++ + V+ L Sbjct: 176 ADVNEQIARVKGNGQTPNDLLDKRDQLIRELNQFIQTTQIPADDGTVGVFIGGSQALVLG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + S+ +F G + G++ LL+ + + +N Sbjct: 236 GKASEVLIAESQQFPGSQLTQLFFKPAGGSPVELNEGMLGGGEVAGLLRFANQDLAEGRN 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L MA + + + + + + G + I ++ Sbjct: 296 LLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTSGTAQGFIDFQTPLGTSE 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 D + G ++ N + ++ Sbjct: 356 FAASDYEVRFTGGPTPTGEVPGQIIRLSDGKTINVANLMASAGTQMDG 403 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 3/207 (1%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 V A + ++ + P + Sbjct: 467 GQHWDATAGKVVATGVLNLPPAGGVQLTYRDGPPSGFVITGTNDQPLNLPPPAPYTPGTT 526 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + L+ L+G + Sbjct: 527 VVPYVPGEPIRIDGWSITLQGTPKDGDTVTVGDAKLSGD---WYTRNAGNASALMALRDV 583 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 + TL + + + + S + +++ S + GVNL EE + LI Sbjct: 584 KMFDESTLSDGYAGLMAQVGTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLI 643 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +Q+Y S K++ + L++ + Sbjct: 644 QYQQAYQASAKMLQIAQNIFDNLIQTM 670 >gi|237731013|ref|ZP_04561494.1| flagellar hook-associated protein FlgK [Citrobacter sp. 30_2] gi|226906552|gb|EEH92470.1| flagellar hook-associated protein FlgK [Citrobacter sp. 30_2] Length = 552 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 57/422 (13%), Positives = 133/422 (31%), Gaps = 18/422 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + + A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E + L A + + + + + + + + SL+ Sbjct: 61 SGVQREYDSFITNQLRAAQNQSSGLTTRYEQMSKIDNLLSSKTSSI--STSMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I A+ +V F T+ + ++ + I+ + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNTAIKASVDQINNYSKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LDQRD L+ ++++I+G+ +++ + ++G +L + Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSIQDGGTYNLTMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + G + LL R + +N L Sbjct: 239 SNARQLAAVPSSDDPNRTTVAYVDGVAGAVEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G + S+ Sbjct: 299 GQLALAFASAFNAQHKEGFDANGDQGKDFFAIGSPEVFNNAKNTGTGSLSAKITDSSAVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF----NKNFIFDPVAGINTNVTLLEYARN 406 D V W V LA + A N + T+ + Sbjct: 359 ATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGMEITVNAGAKANDSFTVKPVSNA 418 Query: 407 SI 408 + Sbjct: 419 IV 420 Score = 84.3 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 8/223 (3%) Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 ++ GS K + +Q D + SF S + Sbjct: 337 NNAKNTGTGSLSAKITDSSAVQATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGM 396 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + G K D+ + +S I ++ S + + Sbjct: 397 EITVNAGAKANDSFTVKPVSNAIVDMKVMVTDESKIAMAQVSKNDTDPTIDKGKSDNRNG 456 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 D K + N T + + + + V + Sbjct: 457 QKLLDLQTKATV--------GNKTFNDAYATLVSDVGNKTATLKTSATTQNNVVTQLYRQ 508 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + GVNL EE L + +Q Y + +++ + + L+ Sbjct: 509 QQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANALFDALINI 551 >gi|83593864|ref|YP_427616.1| hypothetical protein Rru_A2529 [Rhodospirillum rubrum ATCC 11170] gi|83576778|gb|ABC23329.1| Protein of unknown function DUF1078 [Rhodospirillum rubrum ATCC 11170] Length = 452 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 52/492 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MS+ ++ ++ A Q A N+ NA Y + T+ V Sbjct: 1 MSIASIIATGRSGILGAQAQIAVTSTNLTNAGATGYTAKSASTSTQVYGGKAVGVNVVGY 60 Query: 60 ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S + S+ + + + L+ ++ + Sbjct: 61 GNSVDQILAADVVKSASTAAYDDTIASYLSSVLNSYGTTAKGSPLESATTALQTAVSNAV 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ V+ E ++ NT + +Q R AD+ + E+ + L +L +N Sbjct: 121 TAGADSDSVDKVVATLETWTKSLNTLSSAIQSSRTAADQHVAEEVETINGLLGDLDKLNS 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ + D DQ+ LL ++ + I+ ++ V+T G +L + + Sbjct: 181 EFSKAKAAGNPTADIEDQQRTLLTSLATHVDINYYTTATGELNVFTKGGKSLLTSSVHKL 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKALLQIRDSVVPIFQNQLD 291 E + I +DG V G + ALL +RD+ +P Q LD Sbjct: 241 AAEPTGILKAGNPGAKITLDGQTVVDPTVDPPIKELTGGTLGALLTMRDTTLPALQKDLD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 A L + P Sbjct: 301 AFATDLTTIINTVYPG----------------------------------------LIST 320 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA---GINTNVTLLEYARNSI 408 G+ K +G D + + ++ F + TL+ + Sbjct: 321 TPAGASEIKVADPTAITSGDTDKMKGLWTALSEPITFSASTDGTMGASKTTLISRVSAIV 380 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + ++ S +S+ + NT GVN++EE + ++ +QS+ +++++I Sbjct: 381 DNVADLSTAANSKASLSAKTATALSDKFDNTYGVNVEEETAKMLVFQQSFQMTSQVITTA 440 Query: 469 DKMLQTLLEGVK 480 +M TL+ +K Sbjct: 441 REMFNTLMSMMK 452 >gi|296126058|ref|YP_003633310.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296017874|gb|ADG71111.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 441 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 46/491 (9%), Positives = 111/491 (22%), Gaps = 63/491 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + R + + Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + E + NNS Sbjct: 61 GINPQQVGLGMMVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N S +V E ++ + +E I + Sbjct: 121 DRDGYLVNPS----------IGYKVQGWNAVLNPETGEMELNTAAGVEDLIIPVGSKDPA 170 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N + + D T + Sbjct: 171 RATANTKYFCNLQKSG---------------------------ETHQSDLTIYDSTGIPR 203 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +N + +T + V VS+ L+ + + Sbjct: 204 QLRATFTRTDVNRWDMTIDIPDATEGSVSVSAGDPVEGGGNNTFQLVFNDAGSLISVSDG 263 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + ++ E + L G Q+ S + Sbjct: 264 TNTQTEGVLMPNVSFTYQGTEGE-----------VNQTINLTMGEVGLFNGITQFESPST 312 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + K +A N L + Sbjct: 313 TKAIEQDGYTMGMLEGFSFDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTL-- 370 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ N S + ++ + + V+L E+ + +I ++ + + + I D Sbjct: 371 FVASNNSGAANIGTAAAEGRGSLKAGALEMSNVDLSEQFTDMIVTQRGFQSNARTITTAD 430 Query: 470 KMLQTLLEGVK 480 +MLQ ++ + Sbjct: 431 QMLQEVIALKR 441 >gi|126734127|ref|ZP_01749874.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] gi|126716993|gb|EBA13857.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] Length = 444 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 49/489 (10%), Positives = 128/489 (26%), Gaps = 54/489 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55 M++ + N + + + A+I NI N+ Y R T + Sbjct: 1 MTISSSLNASVAGLAANATRLATISDNISNSSTYGYKRAVTDFQSMVIESGQGTYSAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111 R+ + D+ L + S+ + + S ++ R Sbjct: 61 RTTTSRLIDERGALVSTSNPTDLAVRGRGMLPVTSETSVTVDNGDNPLFLTTTGSFRPDA 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y ++ +L + S + ++ +A++ + + ++ Sbjct: 121 QGYLRSPGGLVLLGVPAAADGTIPNYPRDSIDGLVPVQINANQFAGEATTRVDLSVNLPA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 SE + + + + T+ Sbjct: 181 TSTREGASGE--------------------SESLSVEYFDNLGASSNLSFTFTPTVPANG 220 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ +++ I + + G A + D P Sbjct: 221 ASNEWTMEIRDSESDVDADGIPDVVGEYTLTFDATRGGGGTLANVDFADPAAP------- 273 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 G + + ++ + ++ G + Q + + Sbjct: 274 ----------------VGGAYDPITGALSINVDGGPMEINIGELGSSIGLTQLSDAFAPV 317 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + + N+ P+ + L + + Sbjct: 318 SISKNGTPVGSLTSIEVDQNGFVRASFDIGINRVLYQIPLVDVPNVNGLETLDQQ--SYR 375 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S S L I ++ EL+ LI+ +++Y+ + K+I D+M Sbjct: 376 VTPDSGSFFLWDAGDGPTGDIVGFAREESATDVAGELTELIQTQRAYSSNAKVIQTVDEM 435 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 436 LQETTNIKR 444 >gi|77464881|ref|YP_354385.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126463723|ref|YP_001044837.1| hypothetical protein Rsph17029_2963 [Rhodobacter sphaeroides ATCC 17029] gi|221640802|ref|YP_002527064.1| hypothetical protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332559780|ref|ZP_08414102.1| FlgE2 [Rhodobacter sphaeroides WS8N] gi|77389299|gb|ABA80484.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126105387|gb|ABN78065.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161583|gb|ACM02563.1| Hypothetical Protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332277492|gb|EGJ22807.1| FlgE2 [Rhodobacter sphaeroides WS8N] Length = 465 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 53/494 (10%), Positives = 116/494 (23%), Gaps = 43/494 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------E 48 M++ + N N + + A+I NI N+ Y R D Sbjct: 1 MTISSSLNAGVAGLNANATKLATIADNIANSGTYGYKRADADFESMVITQSANGGSYAAG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISK 106 V T R + + +SA+ + + + A Sbjct: 61 GVRANTIRRVEEW---GAPVSTASALDIAISGRGMLPVIRETSLGASSGNEALLMTRTGS 117 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 K + +L + S +++ + A++ + + Sbjct: 118 FATDPSGVLKTDTGLVLLGWPATADGTIPTMSRDSIAQLEPVVIAANQTAADPTTRINLG 177 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ F + +S + Sbjct: 178 VNLPAEETKYGASGRVLTVSVEYFGNLGTSETLSVSYHPTLPAAAG-------------- 223 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + +S + S G+ + I L + Sbjct: 224 --DPPTNNWTMVIRDSANADKVIGIYTMQFSDARSGGGTILDDTAITPLNTVTLDGTTYT 281 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 GS A + + G D + G + Q Sbjct: 282 VEN--------AGSTPPDSSPAYDPLTGGIVLEVAGNADNKIAMTLGKPGSANAMTQVSG 333 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + S + + Y F + P+ + L Sbjct: 334 DFAQTGITKDGSPVGNLTGVEIDDGGFMRATYDTGFTRVIYQVPLVDVPNYNGLTALNNQ 393 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + S + L + ++ EL+ LI+ +++Y+ + K+I Sbjct: 394 TFAI--SPDSGNFYLWDAGDGPTGDVLGYAREGSTTDVATELTNLIQTQRAYSSNAKIIQ 451 Query: 467 FTDKMLQTLLEGVK 480 D+MLQ + Sbjct: 452 TVDEMLQETTNLKR 465 >gi|289433983|ref|YP_003463855.1| flagellar hook-associated protein 1-related protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170227|emb|CBH26767.1| flagellar hook-associated protein 1-related protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 507 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 74/511 (14%), Positives = 153/511 (29%), Gaps = 36/511 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47 M L FN + + + A +NI N + Y+R+ + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + + + + N P+ + Sbjct: 60 YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +KN + ++ + N ++++ + E + +L + Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +L +N AI A + +D L+QRD +L +S GIS NN V + G L Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGK 271 + + + S S Sbjct: 237 VVQGDETTEITSTRTASGFEFFVSGQTLNMPEGSISASVRVNQNEIKSYQAKIETFSNDL 296 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 KAL I+ V + L ++ L + +++ ++ E + L G+ + + Sbjct: 297 AKALDDIQVKNVNKTMDDLQKIGDELQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356 Query: 332 QGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 G + Y ++ S V W + + + Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWMINPTITNNAENKQFLGVIAADIAS 416 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T + I + + S S + +SES S+ GVN+ EE+ Sbjct: 417 LKTDKNIEGTTFPNFMDGLITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +++ + Y + K + + M++ LL + Sbjct: 477 TNIMQYQSYYVANTKAMNTVNDMMKALLAML 507 >gi|262276410|ref|ZP_06054219.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] gi|262220218|gb|EEY71534.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] Length = 625 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 118/346 (34%), Gaps = 17/346 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + A +Q + NI N + Y R+ + + V Sbjct: 3 FDLLTLGSQGVLTAQRQLNTTGHNISNVNTDGYSRQSVEQRANDSAYWSANQWGQGVHAA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + +SA+ + S + + M + +++ +++ Sbjct: 63 AVRRNYDKFAVNEYNITTSALAHAQTRNSQLTMLDDMMSHAAKK--IPENMNEFYGAVKG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S+ K V++ + V N +Q A+ EI+ + + +E+ + Sbjct: 121 LADSPSDMGARKVVLEKSRLVAAGLNDINNVLQSQEANTTVEIDATLKRMNDIGAEIVDI 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + AI A+ +D LD+ L+ ++SE +S R++ V G TL + Sbjct: 181 HKAILKAQAA---DNDLLDRHQKLINELSEYTQVSVNQRDDGLYNVIIGSGHTLVSGLHS 237 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++G + +A +G++ A+ + RD+ + +++L + Sbjct: 238 SELQTVPGTPDHQKRRLAL-VEGKALKP-IDNADIRGRLGAMFEFRDNTLAQARDELGRL 295 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 A S +E + G I D + + + Sbjct: 296 AAGFAMSINELQSQGYDLGGQVGENIFVDFNSDDFARDRIVKASDS 341 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 33/344 (9%), Positives = 99/344 (28%), Gaps = 5/344 (1%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + + R + + ++ S+ + + ++ DF R V Sbjct: 282 DNTLAQARDELGRLAAGFAMSINELQSQGYDLGGQVGENIFVDFNSDDFARDRIVKASDS 341 Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-TSESNPIFIDG 256 + + + + + + + TL + + S + I +D Sbjct: 342 TAALKVYIDDLAQLKIGDYQLKFDGSQYTLVDPEKNTVAVTPSGSPPSINYDGLRIQVDV 401 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 +V+ + P + + + Q ++ ++ + ++ Sbjct: 402 GLVAGERVIIRPVRQGAGQIHVTMEDPAKIAAQSYISSKSILTGQGDLKVTQPGAQQEFQ 461 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + I+ +G + + ++ Sbjct: 462 VAISPDATQFAVLDMKGNILLAPQAYPPTAPVTVNGTTFELTDGAAPEDVFAVSLLPADG 521 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + +L++ L ++ L S+V + + Sbjct: 522 ENGNLIRMQKLQTLKLMDGGRSSLIDVYEGLNTDLGVQKASFARLEDVSRVEHDAAAGRV 581 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GVNL EE + ++K + +Y S++++ ++ +TLL + Sbjct: 582 AEISGVNLDEEAANMMKFQHAYMASSRIMTAANETFETLLNATR 625 >gi|325982365|ref|YP_004294767.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212] gi|325531884|gb|ADZ26605.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212] Length = 638 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 125/406 (30%), Gaps = 15/406 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + + A Q + NI N Y R+ + + V Sbjct: 3 NGILDIGISGLLTAQNQLLTTSHNISNVATPGYNRQQVILNTNTPQSSGAGFVGRGVHST 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + Q L F +K++ + + + +L+ Sbjct: 63 TVQRIYNQFLVNQSLQIQTQS--QSLDSHFAQIKQLDDMLGDTTSGLSPALQNFFSALQD 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + +I N E + F + + + ++R D + ++ + + +L + Sbjct: 121 VASNPSVIPSRQAMISNGEALAARFQSMDQRMSQMREDINAQVTSIVVEVNSLAGQLAKI 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N I + A+D LDQRD L+ ++S++I TI +N + ++ +G L Sbjct: 181 NQQITLAEGASGGQPANDMLDQRDELINRLSKLINTDTIRESNGSVSIFVGNGQALVVGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + + + + ++ + G + LL R + QN L Sbjct: 241 QVLSLKAIQSPDDPSDLTLGLISRNNTIQIHED-QITGGVLGGLLSFRSETLDNAQNALG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L SF+E+ + + G + Sbjct: 300 RIAITLAHSFNEQHQLGVDLNGDMGENFFTVPSPKVISALTNNPASNITASISDHGALTT 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 D + + L+ + S + D ++ Sbjct: 360 SDYQFSYDGTNYTLTRLSDNTSVSTLVAPSGGAPLVLDGISVTGAT 405 Score = 90.9 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 28/381 (7%), Positives = 82/381 (21%), Gaps = 13/381 (3%) Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L + + I + + + + + + + Sbjct: 255 SDLTLGLISRNNTIQIHEDQITGGVLGGLLSFRSETLDNAQNALGRIAITLAHSFNEQHQ 314 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N + + + I+ I + ++ Y TL Sbjct: 315 LGVDLNGDMGENFFTVPSPKVISALTNNPASNITASISDHGALTTSDYQFSYDGTNYTLT 374 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + I ++ + Sbjct: 375 RLSDNTSVSTLVAPSGGAPLVLDGISVTGATILTNERFRIQPTVNGAKDIAVNIADTTKI 434 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVP-------------GLFIADGIKDLDNKLCQGIS 335 R + P + + G+ Sbjct: 435 AAAAPNRTNAAVTNTGTGKISAGTVNPLPLDPNLQQPLTITFHAPYDGQYDVTGIGAGLP 494 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 T + ++ + + ++ + N Sbjct: 495 ATNQAYTEGADISFNGYTFQISGNPAAGDIFTITPNLNGSADNRNALLLGALQTKNTVEN 554 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + + + + I + +T GVNL EE + L++ + Sbjct: 555 GTASYQSAYGQLVSQIGNKTRELEVTSKSQANFLAQIENTIQSTSGVNLDEEAANLMRFQ 614 Query: 456 QSYNISNKLIMFTDKMLQTLL 476 Q+Y ++K+I ++ + ++L Sbjct: 615 QAYQAASKIIEMSNTLFDSIL 635 >gi|160901877|ref|YP_001567458.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95] gi|160359521|gb|ABX31135.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95] Length = 818 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 141/413 (34%), Gaps = 29/413 (7%) Query: 16 NASQQFASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSE 58 + + NI N++ + + R+ + + TV + Sbjct: 19 TNKIAMSVVAHNISNSNTQGFSRQSPVIVTTNPINLTTIGSGGAALSFGTGSTVSDIQRV 78 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 D SS + + S E + + + S+E + Sbjct: 79 RDEFLDLQFRETSSRLNYWENIYSNVHYIEQLFG-EPGETGLRNMYDSYWASIEELKTDP 137 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S + V+ AEE+V +++++ D + EI+L I + +L + +N I Sbjct: 138 SNEAAKTQVVSRAEELVNTMKDLNYRLEELKNDINSEIKLRIDEINGYLKRIADLNQKIL 197 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 ++ +D LD+RD LL K+SE+ I +N + + D L + ++I Sbjct: 198 TSSSMSGSPNDLLDERDRLLDKLSELSNIRITSHSNGQISLSMGDKVVLNGSSYQEI--- 254 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + T+++ ++ +++ N GK+ AL ++RD ++P +Q QLDE L+ Sbjct: 255 RSLTIAETNDAYYAYVGSNLLTFN------DGKMSALFELRDEIIPSYQQQLDEFGLYLV 308 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + +S I N + + Sbjct: 309 DTTNLIYKEGWDSTGTITGANFFADISTKRGFEDSRFFRIAGNSDVFHPDTI--KHVTSL 366 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 F + DL + + + + D + + Y ++ G+ Sbjct: 367 SSFYSDPSIDLNNFDLYSVDYSATSPSPYDDSNSIKYDSTNNAIYFDDTSGFQ 419 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 89/238 (37%), Gaps = 8/238 (3%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y + + N + GS V + +++ + + + + + Sbjct: 584 DTAYDLVDKINATNTGVTASVTPHGSFVLRAGNLIDFDLKNVTIKGPEKLFNALGFIEDD 643 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S + I+ + L GI I V+ + NPS L + Sbjct: 644 SNNIVTLISPDISPEQIDEKFSEADLLKIDNELGIVNQISVSSNLKENPSLLAT--DLGY 701 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + AG + + ++ + + + V + N + + + Sbjct: 702 YDINYSPTGAGNVSVWDEISKMYDNSVLDN------GRVGFSNFLGNIVTDIGVKGETAD 755 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + S+++ + IS +GV++ EE++ L+K +Q++N S ++I ++M++T++ Sbjct: 756 KMRLNSEMLNSEISLEKERVMGVSIDEEMTNLVKYQQAFNASARVITAVNQMMETVIN 813 >gi|121596124|ref|YP_988020.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42] gi|120608204|gb|ABM43944.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42] Length = 691 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 52/472 (11%), Positives = 132/472 (27%), Gaps = 36/472 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MSL N + NI N Y R++ V Sbjct: 1 MSL---LNVGARALLANQVALQTTGHNIANVSTAGYSRQNVGMETVQGQFTGSGYIGNGV 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + + + A + + + + + I+ + +S Sbjct: 58 QVATILRNHNELLTRQAAAAQAVQAGDTVRAERLGQLQDVFQ--GGTSGLGAAITDMLNS 115 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + ++ + +E+ +SA ++ +I +++++ + + + + Sbjct: 116 LADVVASPTDITARTVTLTRMDEMAARMRSSAEQLHEIAYSVNEQLQNDATRINSLAKSI 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN+ I + +D LD+RD L++++++ I + I ++ + V+ L Sbjct: 176 ADVNEQIARVKGNGQSPNDLLDKRDQLIRELNQFIQTTQIPADDGTVGVFIGGSQALVLG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + S+ +F G + G++ LL+ + + +N Sbjct: 236 DKASEVLIAESQQFPGSQLTQLFFKPAGGAPVELNEGMLGGGEVAGLLRFANQDLAEGRN 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L MA + + + + + + G + I ++ Sbjct: 296 LLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTSGTAQGFIDFQTPLGTSE 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAG------------YPDLINHYCDSFNKNFIFDPVAGINT 396 D + G +L+ + AG Sbjct: 356 FAASDYEVRFTGGPTPTGEVPGQIIRLSDGKTINVANLMASAGTQMDGLTFKFSTAGAVN 415 Query: 397 NVTLLEYARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVG 441 L + ++ ++ + + + + G Sbjct: 416 ERVLFKPFASAAANIQALVYSPRDLAVANPINAAMGTSNAGTLQLAQLSATG 467 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/417 (8%), Positives = 94/417 (22%), Gaps = 6/417 (1%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +L + + + R L AL + + T + K Sbjct: 279 VAGLLRFANQDLAEGRNLLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTS 338 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + +A + + + R S+ +N A +A Sbjct: 339 GTAQGFIDFQTPLGTSEFAASDYEVRFTGGPTPTGEVPGQIIRL-SDGKTINVANLMASA 397 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + N +VY+ + + + + Sbjct: 398 GTQMDGLTFKFSTAGAVNERVLFKPFASAAANIQALVYSPRDLAVANPINAAMGTSNAGT 457 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + S + + + P L Sbjct: 458 LQLAQLSATGLHWKDPKYTKTNPPAETVANGLVGDVLRIPPPPEPQVPPIPQITLTYREK 517 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E + + + + + Sbjct: 518 E-SARGFFVSGTDEPPLNIDPPGSYTPGTVIPYVSGKPIQINGWSITLQGTPKDGDTVTV 576 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + K + + + +L + + + + Sbjct: 577 GDAKLSGDWYTRNAGNASALMALRDVK----MFDESSLADGYAGLMAQVGTRTQSAQYAA 632 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S + +++ S + GVNL EE + LI+ +Q+Y S K++ + L++ + Sbjct: 633 KLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNIFDNLIQTM 689 >gi|89902483|ref|YP_524954.1| flagellar hook-associated protein [Rhodoferax ferrireducens T118] gi|89347220|gb|ABD71423.1| Flagellar hook-associated protein [Rhodoferax ferrireducens T118] Length = 644 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 47/414 (11%), Positives = 133/414 (32%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + + NI N + Y R+ + S + V + Sbjct: 1 MSGLLSVGTRALQANQVMLQTAGNNIANVNTPGYSRQSAVLQTSTGQFTGGGYIGKGVDI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + + S+ E + I+ + ++ Sbjct: 61 QTIQRNFSAFLTRQSALASATGAADSSRADKLKQLEGIF--PGGTAGLGAAINDMLNAFS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++ + +E + T+++ + +++ +E+ ++SN+ + Sbjct: 119 DVANAPTDLTARTVALTRVDEAAKRMRTASQNLDDLQSGVAQELSQKVSNINSLAKSIAD 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +ND I S +D LDQRD L++ +++ + S+I ++ + ++ + L Sbjct: 179 INDKIARTQGSGQPPNDLLDQRDQLVRDLNQYVQTSSITASDGTVGIFLAGSQALVLGST 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + +S G + +A+ G++ LL+ +++ + +N L Sbjct: 239 VSPVSIVKDDFGDPLKSKLAISRGGQAITLDENALGGGEVAGLLRFQNNDLVEGRNLLGR 298 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + S + + + + + G + + ++P+ Sbjct: 299 LTLAIGTSMNNQHQLGLDLDGNAGGNLF--TPTVFGAGNILKPSAPATLNTGTASPALTI 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + + + I D F P+ N+++ + N Sbjct: 357 SDVTQFVASDYEMNFTSATSGNITRRSDGVVTAFTSVPITIDGLNLSIPSGSAN 410 Score = 86.6 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 53/441 (12%), Positives = 111/441 (25%), Gaps = 15/441 (3%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI-SKLRDSLES 113 R N+ + + A +G L +S + + SKL S Sbjct: 204 VRDLNQYVQTSSITASDGTVGIFLAGSQALVLGSTVSPVSIVKDDFGDPLKSKLAISRGG 263 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + L E+ LG + N R + A L L Sbjct: 264 QAITLDENALGGGEVAGLLRFQNNDLVEGRNLLGRLTLAIGTSMNNQHQLGLDLDGNAGG 323 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N + + + +D + + T+ T Sbjct: 324 NLFTPTVFGAGNILKPSAPATLNTGTASPALTISDVTQFVASDYEMNFTSATSGNITRRS 383 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 D S +T + + I + + A + P + Sbjct: 384 DGVVTAFTSVPITIDGLNLSIPSGSANPGDRFLLKPFSTAASNINAEFSAPRALAVASPV 443 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A L + ++ + + S+ I N + S Sbjct: 444 AGSLGTGNTGSMQLSSLLARSNPVASTPVVLTFTGANSYTRSDEIPANATTFTYTSGQVI 503 Query: 354 GGSVSKKF--------------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 G+ + + P + + Sbjct: 504 EGTTPATNPLSQWSLTLQGVPKAGDTFTVQQQPAAFRNLNAGNASAMTGLRDVAMFDGSA 563 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + + I + ++ S + ++ + GVNL EE + L++ +Q+Y Sbjct: 564 LSDGYASLISQIGIRTQSANYSAQVSSSIAANLERDRTGVSGVNLDEEAAKLLQYQQAYQ 623 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 S K++ + TL++ ++ Sbjct: 624 ASAKMMQIAQGIFDTLIQTLR 644 >gi|149203100|ref|ZP_01880071.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] gi|149143646|gb|EDM31682.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] Length = 433 Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/489 (9%), Positives = 126/489 (25%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N + N + + A+I NI N+ Y R + + Sbjct: 1 MTISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESVVIAGRGGSYAAGGV 60 Query: 56 RSENKNMFDK--VLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSL 111 R+ + + D+ + + S+ + F A + + R Sbjct: 61 RAGTQRLIDQGGAIVSSSNPTDLAVRDRGFLPVARVTDLVVGNGDPRMLLTTTGSFRADP 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S +L + + + ++ ++ ++ + ++ + + Sbjct: 121 QGRLVTESGLVLLGWPANPDGTIPEFSRDTSTGLEPVQINVNQLTGEPTTAIN----LGV 176 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + ++ D L + I + + Sbjct: 177 NLPATDTRFDSLGDPRQLSIEYFDNLGTSETISIQFTPTIPA------------------ 218 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + T+T + + G V + + G + + + + Sbjct: 219 ---TGLSNEWTVTLTDSAQGNALIGEYVLTFDDARETGGTLLNVQSVTGGTYDPTSGAII 275 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + P + A D Sbjct: 276 VDVAGGPIEINIGRPGTSAGMSQLSDSFAPHSIAKDGSPV-------------------- 315 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 N+ + + ++ P+ + ++ + +L Sbjct: 316 ---------GNMTSANVDANGFVRATFDTGVSRIVYQVPLVDLPNPNGMVSMDQQ--TYL 364 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S S L I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 365 PSTDSGSFFLWDAGAGPTGDIVAFARQESATDVAGELTDMIQTQRAYSSNAKVIQTVDEM 424 Query: 472 LQTLLEGVK 480 LQ ++ Sbjct: 425 LQETTNIIR 433 >gi|51598543|ref|YP_072731.1| flagellar hook protein FlgE [Borrelia garinii PBi] gi|51573114|gb|AAU07139.1| flagellar hook protein [Borrelia garinii PBi] Length = 442 Score = 142 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 49/490 (10%), Positives = 121/490 (24%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + +T++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVIHTASDIEDLIIPIGDKEGAKSTKNI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++++ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPIIEEGASSADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + P+ I+G S+ +G + +L N Sbjct: 219 ------LTVVKDLNTPNLWNAPVLINGEQNSNFTIGFDNEGALASL------------NG 260 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + + N V + Q+ + S Sbjct: 261 QPGQKEDILQIPITFNVVGANVGEVGEQQTVNLKLGTVGSYT-------DSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|317133463|ref|YP_004092777.1| flagellar hook-associated protein FlgK [Ethanoligenens harbinense YUAN-3] gi|315471442|gb|ADU28046.1| flagellar hook-associated protein FlgK [Ethanoligenens harbinense YUAN-3] Length = 548 Score = 142 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 73/544 (13%), Positives = 152/544 (27%), Gaps = 67/544 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 SL N A + + + NI NA Y R+ Sbjct: 3 SLNTGLNTALSGLSASQTALGVTAHNISNAATDGYSRQMVDLQAVNVNTGAYQWKPVVPF 62 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-----SP 100 V D ++ Q+ E + + + Sbjct: 63 VGNGVNSNQITQARDGFLDVRYRTANAQYSDYEQRQNDLGQVEDIFNEVSTSGNDTLQGL 122 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + ++ L + + SY + + L T+ +AE +V T+ + + + + + Sbjct: 123 SGQLNTLINDIGSYQSSPASSSLPVTIKTDAENLVTKIRTAYSSLTTFESQEQSALNVVV 182 Query: 161 SN------LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 S + L ++ +N I A+D DQR+ LL K+S + IS +++ Sbjct: 183 SGDTQSGGINGILQNISTLNTQIVSMEVGGQPANDLRDQRNQLLDKLSGYLDISATEQSD 242 Query: 215 NDMVVYTSDGTTL-----------------------FETVPRDINFEKMNSYTVTSESNP 251 + V + + ++ ++S Sbjct: 243 GSVTVQMENDLASGSGAMLVDGNNIVHTLKVVTDGPTDASGLSTTAVTWDASDSNNQSTT 302 Query: 252 IFIDGVVVSSNQGSAVPKGKIKA-----------LLQIRDSVVPIFQNQLDEMARVLIGS 300 + S +V G + D V + L++ A+ Sbjct: 303 YATNTGTGWSGNTLSVGGGSVNGYLAILNGDGSGTGSYGDVGVHYLKEHLNDFAQSFADI 362 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + +G + T + + + +K Sbjct: 363 MNSTSTSSGGGAQMLTYGSGTPPTPTYPDTTGWSDPTASAAYVATDAAATISLSDAWNKD 422 Query: 361 FLWNVKNLAGYP------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 N G +N + ++ + T+ T+ YA + Sbjct: 423 DTLFGDNYTGTSVGTYAQAFLNALGSAQVSSYDTSAHKTLYTDGTMASYAATFSNKIANV 482 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 +D + Q+ N + + V++ EE L+K +Q Y S ++I + M+ T Sbjct: 483 INDDTTMAGNYQIQKNDLDTQRQSVSSVSIDEETVNLMKFQQMYGASARVITTINDMMGT 542 Query: 475 LLEG 478 LL Sbjct: 543 LLSM 546 >gi|116694225|ref|YP_728436.1| flagellar hook-associated protein FlgK [Ralstonia eutropha H16] gi|113528724|emb|CAJ95071.1| flagellar hook-associated protein 1 [Ralstonia eutropha H16] Length = 639 Score = 142 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 48/438 (10%), Positives = 139/438 (31%), Gaps = 22/438 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++F+ + N A + N N+ + Y R++T+ + T Sbjct: 2 SLFSIGLSGLNTAQNALTTTGHNFANSATEGYSRQNTIVASAGGQYTSQGFYGFGSNTTT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 L +SA A + + AD + K ++++ Sbjct: 62 VIRVYDEFLTGQLRGATSASASLAAYSDQIAQIDNLLADQ--KGGLAPLMQKFFAAVQAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + ++ + +V +++ +++++ ++++ ++ + + ++ +N Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQSGVNEQVGTAVTQVNAYTRQIANLN 179 Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 I + +D LDQRD + +++ ++G +V+++ V+ +G L Sbjct: 180 QEITRLKAASGGQPPNDLLDQRDQAVAELTRLVGAKVVVQDSGTYNVFVGNGQPLVMGND 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + V ++ A+ G + LLQ R + QN + Sbjct: 240 AYELKAVASAADPNRTVVAYTLPNGNVFESEPGAITGGSLGGLLQFRTESLDAAQNAIGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + SF+ + + + G + + +T + + + Sbjct: 300 LSLAIGQSFNAQHKLGIDLNGAIGTDMFELGSATSIPNANNTVKTTVATTRIDNASALTT 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + L + + A + + + Sbjct: 360 SDYKLQFDGT--------NYTLTRLSDNQQVVTPVPAGGASYPLQFSADGFTVEINAAMG 411 Query: 413 KNRSDSHDLHMKSQVVFN 430 N S + + F+ Sbjct: 412 TNDSFTIQPTRNAATGFD 429 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/330 (11%), Positives = 87/330 (26%), Gaps = 7/330 (2%) Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D + I ++ L S N ++ D L D LQ ++ + Sbjct: 317 DLNGAIGTDMFELGSATSIPNANNTVKTTVATTRIDNASALTTSDYKLQFDGTNYTLTRL 376 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 N + + G + D ++N+ T++S I + + Sbjct: 377 SDNQQVVTPVPAGGASYPLQFSADGFTVEINAAMGTNDSFTIQPTRNAATGFDMAISDPA 436 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +I A R + + +S + +D L + Sbjct: 437 RIAAASPARADAAASNKGNGTVSLGKVAPGYSLLAGTITARFDGTTYVFSDANGPLATQP 496 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + SF + L + + N Sbjct: 497 APVSNGSNTDYTLNGLTFSFGGTPATGDTFTLSSNAGAVKDNGNMLALAKLQN------- 549 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 I + E + + + I + + GVN+ EE Sbjct: 550 AKTIGGVSSFSEGYAQLVNDVGTRAKSVKIASASQDSITTQIKTAQQSVSGVNMDEETVS 609 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ +Q Y + ++I + T++ + Sbjct: 610 MLRFQQLYQANARVIQTAGTLFDTIIGIGR 639 >gi|288940409|ref|YP_003442649.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] gi|288895781|gb|ADC61617.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] Length = 436 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 50/484 (10%), Positives = 113/484 (23%), Gaps = 61/484 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-------TVVTQR-- 56 F+ + A++ N+ N+ + + + + V R Sbjct: 2 SFSIGLSGLQAAAKDLEVTGNNVANSGTIGFKKSRAEFADIYASSFYTCVNKSAVGVRLD 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + + + F +++++ + + + Y Sbjct: 62 AVTQQFSQGNVELTDNTLDLAINGEGFF----VLNSEAGQDGKVYTRNGAFQVDRDGYVV 117 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L V F+T Sbjct: 118 NSSGQRLQAYPPTTPNSAVSAFDT------------------------------------ 141 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 D D + K + + + + ++ ++ T+ F Sbjct: 142 --------GKLEDIQLPLDNMAPKATTEVELQVNLNSDETVITGTTPPGPAFAFPTAPAT 193 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 SY ++ G A+ + Q+ Sbjct: 194 DVDPTSYNWSTTYQVYDSLGKPRDVTMYFVKTAPDNWAVHVGMRDSAGVMQDVGGGTNTA 253 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP--SFLRDG 354 + + D + DN N N + Sbjct: 254 IFTAAGVFDTATSTPNPIAVSVGPFLTPPDDNGAGALAFSIDMSNSTQYHNSRNNLNDVT 313 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + ++ + + Y + + +A L + N W E Sbjct: 314 QDGYTSGTLSGFDVDADGAIFSRYSNGKSYVLGQVAMANFKNPQGLQQLGDN--NWGESY 371 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S I V+L +EL +I +++Y + K I +D+M QT Sbjct: 372 NSGEPIYAAAGDGRLGSIQSCALENSNVDLSQELVNMITAQRNYEANAKTISTSDQMTQT 431 Query: 475 LLEG 478 +L Sbjct: 432 ILNI 435 >gi|254488501|ref|ZP_05101706.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] gi|214045370|gb|EEB86008.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] Length = 432 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/489 (11%), Positives = 129/489 (26%), Gaps = 66/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + AS+ NI N+ Y R T + + T Sbjct: 1 MTISSSLNAGVAGLQANATRLASVSDNIANSSTYGYKRVVTDFNSLVLSEGSSSYTAGGV 60 Query: 56 RSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTHYISKLRDSL 111 R+ ++ + D L + +++ + F + +A+ R Sbjct: 61 RASSQRLLGEDGALVSTTNSTDLAVRGRGFLPVTTATEFNANSETPEMMLTTTGSFRLDA 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E + K S +L + + + ++ ++ + + Sbjct: 121 EGFLKTESGLLLMGWPANADGSIPIYPRDTDDGLRPVQFALNLNGDPTTRVDMSL----- 175 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + S ++ D L S + + V Sbjct: 176 NLPATATAAGGSGEPQILSIEYFDNLGTSKSISMEFT--------------------PNV 215 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + N + S + + G S G I ++ I + L Sbjct: 216 PATGTTNEWNVKLMDSAQGGLLV-GEYTILFDDSRASGGTIASVTTITGNAYDPVTGDLI 274 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + G + Q + + + Sbjct: 275 V-----------------------------DAQSGPIEFNIGAIGSSFGLSQLSDSFAPI 305 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + Y + P+ + ++ +L Sbjct: 306 ALTKDGSPIGNMAGVEVDENGYVNAIYDNGLRNTIYQIPLIDMPNPEGMVSLDAQ--TYL 363 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +S ++ L + I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 364 PSTKSGAYFLWDSGEGPTGDIKSYSREESTTDVATELTTMIRTQRAYSSNAKVIQTVDEM 423 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 424 LQETTNIKR 432 >gi|188592123|ref|YP_001796721.1| flagellar hook-associated protein flgk [Cupriavidus taiwanensis LMG 19424] gi|170938497|emb|CAP63484.1| FlgK: Flagellar hook-associated protein 1 [Cupriavidus taiwanensis LMG 19424] Length = 639 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 47/438 (10%), Positives = 138/438 (31%), Gaps = 22/438 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++F+ + N A + N N+ + Y R++T+ + T Sbjct: 2 SLFSIGLSGLNTAQNALTTTGHNFANSATEGYSRQNTIVASAGGQYTSQGFYGFGSNTTT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 L +SA + + + + AD + K ++++ Sbjct: 62 VIRVYDEFLTGQLRGATSASASLAMYSDQISQIDNLLADQ--KGGLAPLMQKFFAAVQAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + ++ + +V +++ ++++A ++++ ++ + + ++ +N Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQAGVNEQVGTAVTQVNAYTKQIANLN 179 Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 I + +D LDQRD + ++++++G +V+++ V+ +G L Sbjct: 180 QEITRLKAASGGQPPNDLLDQRDQAVAELTKLVGAKVVVQDSGTYNVFVGNGQPLVMGND 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + V ++ A+ G + LLQ R + Q+ + Sbjct: 240 AYELKAVASVADPNRTVVAYTLPTGTVIESEPGALTGGSLGGLLQFRTETLDPAQSAIGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + SF+ + + + G + +T + + Sbjct: 300 LSLAIGASFNAQHQLGIDLNGAAGTDMFKLGGATTLPNANNTVKTTVATATIDNASALTT 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + L + + A + + + Sbjct: 360 SDYKLHFDGT--------NYTLTRLSDNQQVVTPVPAGGATYPLQFSADGFTVEINAAMG 411 Query: 413 KNRSDSHDLHMKSQVVFN 430 N S + + F+ Sbjct: 412 TNDSFTVQPTRNAATGFD 429 Score = 93.9 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 36/334 (10%), Positives = 83/334 (24%), Gaps = 7/334 (2%) Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 ++ D + ++ L + N + D L D L Sbjct: 313 QLGIDLNGAAGTDMFKLGGATTLPNANNTVKTTVATATIDNASALTTSDYKLHFDGTNYT 372 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 ++ + N + + G T D ++N+ T++S + + + Sbjct: 373 LTRLSDNQQVVTPVPAGGATYPLQFSADGFTVEINAAMGTNDSFTVQPTRNAATGFDMAI 432 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 KI A P + + S S+ P Sbjct: 433 NDPAKIAAAS-------PAYIDATAGNKGNATASLSKVAPGFTLPAGKITAEFDGTNYIF 485 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + V ++ + S G + Sbjct: 486 KVGGVAMAPQPVGVPNGSNTDFTLNGLTFSFGGTPAAGDSFTLGSNAGAVKDNGNMLVLA 545 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 I + E + + + I + + GVN+ E Sbjct: 546 KLQNAKTIGGVSSFSEAYAQLVNDVGTRAKSVKIASASQDSITTQIKTAQQSVSGVNMDE 605 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E +++ +Q Y + ++I + T++ + Sbjct: 606 ETVSMLRFQQLYQANARVIQTAGTLFDTIIGIGR 639 >gi|121607555|ref|YP_995362.1| flagellar hook-associated protein FlgK [Verminephrobacter eiseniae EF01-2] gi|121552195|gb|ABM56344.1| flagellar hook-associated protein FlgK [Verminephrobacter eiseniae EF01-2] Length = 658 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 56/454 (12%), Positives = 132/454 (29%), Gaps = 19/454 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N + + NI N + Y R+ + V V Sbjct: 2 GLLNVSTRALLADQVVLQTTGHNIANVNTPGYSRQSVALQTVPGQFTGNGYIGQGVDVAG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + A +A + + + + I+ + ++ Sbjct: 62 IVRSQSELLTRQSAAAGAAQSADAVRAERLGQLQDVF--SGGSAGLGAAINDMLNAFADV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 ++ V+ +E T+A + +I+A A +++ + + ++ VN Sbjct: 120 LGAPTDITARTVVLTRIDETAARMRTAAGRMDEIQAAASAQLQSSVGVVNDLAMQMAAVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LD+RD +++ I++ + + I ++ + ++ + L Sbjct: 180 EQITRAKGNGQTPNDLLDRRDQIIRDINQQLQTTQIPADDGSVGLFVAGSQPLVLGNTAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S S +F + G S + G I LL+ + + +N L Sbjct: 240 SLSIAEASAFPGSGQARLFFNRPGAKPVEMDDSLLGGGAIPGLLRFDNHDLSEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349 MA L + +++ + PG + + T+ + S+ Sbjct: 300 MAMGLGLALNQQQNQGLTLDGQPGKNLFGLPASMPGHTSGAGVGTVTFSDPTRFAASDYE 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 GS + + + D + + G L + + Sbjct: 360 IRFATGSAGQVVRLSDGQATPFTDPAQLAAQAIDGLRFDLTRPGAPGQSMLFKPFGTAAS 419 Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTVG 441 L+ DL + + G Sbjct: 420 NLQALVHAPRDLAAANPVMAAMGSANGGTLQLAG 453 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 4/225 (1%) Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG---NSENVP 315 ++N A LQ+ + + + G + P Sbjct: 432 AAANPVMAAMGSANGGTLQLAGLKATGLPHPPGLVLPANANPAATPPIAGGVQLQFDAGP 491 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + ++ + +R G+ + + N Sbjct: 492 PMRYDVLDRRTTPPTTVATAQPYVSGAPIAIDGWEIRLQGAPNTGDTVLIGNALDPQYGD 551 Query: 376 NHYCDSFNKNFIFDP-VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 D+ N + + D + TL + +I + + S+ + ++ Sbjct: 552 RFSRDTGNASALMDLRDLKMFDESTLSDGYAQAIAQVGTRTQSAKFAADLSRTIAANLER 611 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVNL EE + LI+ +Q++ S+K++ + LL+G+ Sbjct: 612 DRTAISGVNLDEEAARLIQYQQAFQASSKVMQVAQNIFDALLQGL 656 >gi|313497761|gb|ADR59127.1| FlgE [Pseudomonas putida BIRD-1] Length = 440 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 55/485 (11%), Positives = 123/485 (25%), Gaps = 59/485 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55 FN + A++ NI N + T + + V Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61 Query: 56 R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ ++A A+ F AL + + Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKAG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y N S L + +++Q T +L+I +++ Sbjct: 115 YVVNASGANLQGYAVGEDGKIIQGILT----------------DLQIDTSNLTPKPTSLI 158 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + I +A+ + D + + + N + M Y Sbjct: 159 TEKINLNSAATSPSVTPFDPTNASSYNFTFNTPVYDSQGNEHQMNQYFIKDDATNTWSMH 218 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++ + + A+ G + L I + + Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMTAGDVAGGLSIGEDKIFQL------- 271 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + G+ + QY ++ + + Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAIANADGVKLDMLGATQYNASSAEIAK 316 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ L + + +K +A L W E Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + IS V+L EL LIK + +Y + K I ++Q Sbjct: 375 YASGVPVIGAPDTGTLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434 Query: 474 TLLEG 478 T+++ Sbjct: 435 TIIQM 439 >gi|110677963|ref|YP_680970.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] gi|109454079|gb|ABG30284.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] Length = 436 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 59/489 (12%), Positives = 126/489 (25%), Gaps = 62/489 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-----Q 55 MS+ + N SQ+ ASI NI N+ Y R T + Sbjct: 1 MSISSSLNAGVAGLQTNSQRLASISDNIANSSTFGYKRVQTDFESMVLSSGGGAYAAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111 R+ + + D+ L + S++ + + ++ R Sbjct: 61 RANTQRLIDERGTLVSTSNSTDLAVRGGGMLPVAQAAQVQTAGTDAPMFLTTTGSFRPDA 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y + S +L + +A ++ IR + S Sbjct: 121 DGYLTSQSGLVLMGWPAAADGSIPVYPRDTADGLEPIRIATGQLAG------NPTTSMSL 174 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N A + + S+ + I+ T Sbjct: 175 GINLPATETEADSAGLVEQISVEYFDNLGTSQSVSITFTPDVPAPGNPAT---------- 224 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 E +S ++ + G+ I A D+ Sbjct: 225 -NTWTMEMFDSVNPAVSIGSYTLEFNDSRTGGGTLFDVTPIGASPAYSDTT--------- 274 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 I + ++ G Q + + + Sbjct: 275 -------------------------GLITINVAAGPIEVDIGALGDTEGLSQLSYSFAPI 309 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + ++ + + + P+ + L + +S +L Sbjct: 310 SVTKDGSAIGNFVGVDVDPNGFVRASFDTGEIRTIYQIPLINVPNPNGLQAF--DSQTYL 367 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +S + L I ++ EL+ +IK +++Y+ + K+I D+M Sbjct: 368 PSRQSGAFFLWNAGDGPTGDIVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDEM 427 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 428 LQETTNIKR 436 >gi|26991077|ref|NP_746502.1| flagellar hook protein FlgE [Pseudomonas putida KT2440] gi|24986112|gb|AAN69966.1|AE016635_2 flagellar hook protein FlgE [Pseudomonas putida KT2440] Length = 440 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 55/485 (11%), Positives = 123/485 (25%), Gaps = 59/485 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55 FN + A++ NI N + T + + V Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61 Query: 56 R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ ++A A+ F AL + + Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKAG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y N S L + +++Q T +L+I +++ Sbjct: 115 YVVNASGANLQGYAVGEDGKIIQGILT----------------DLQIDTSNLTPKPTSLI 158 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + I +A+ + D + + + N + M Y Sbjct: 159 TEKINLNSAATSPSVTPFDPTNASSYNFTFNTPVFDSQGNEHQMNQYFIKDDATNTWSMH 218 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++ + + A+ G + L I + + Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMTAGDVAGGLSIGEDKIFQL------- 271 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + G+ + QY ++ + + Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAIANADGVKLDMLGATQYNASSAEIAK 316 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ L + + +K +A L W E Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + IS V+L EL LIK + +Y + K I ++Q Sbjct: 375 YASGVPVIGAPDTGTLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434 Query: 474 TLLEG 478 T+++ Sbjct: 435 TIIQM 439 >gi|83859391|ref|ZP_00952912.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] gi|83852838|gb|EAP90691.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] Length = 465 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 61/489 (12%), Positives = 133/489 (27%), Gaps = 33/489 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + S A+I NI N + Y R DT+ T + + R + Sbjct: 1 MSINSAMAAGASGLIANSSALAAISDNIANVNTVGYKRVDTIFTPNYKIGGGGETRYASS 60 Query: 61 NMFDKVLHAHSSA---------IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + +S+ F ++ +A + + Sbjct: 61 GVSSNSRLDVNSSGLLTPGVSATDMAIDGDGFFVVRPSPTAGGSSDAVLFTRSGGFQTDS 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 Y +N + L + V + ++ + ++ + Sbjct: 121 SGYLRNDAGMYLYAWPVQADGTVN-------------QNPSNVDTLEAVNLSNIGGTANA 167 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + I + D + G T + T G Sbjct: 168 TSSVRINANLQASTTPSAAAATYDPTASGTNMASGTVTPDFERTIQIYDTQGG------- 220 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 R + + T ++ + G+ + G+I + D+ I Sbjct: 221 VRSVTMSFLKHATNANQWHVELHVQPASDVTTGAPLIDGQIATGIVAFDTNGEIVPGAPT 280 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + L D + G+ L G + T Q+ S + Sbjct: 281 TLPTSLPFE--ASDAAGAVGAGAVRWAASTGVGAQTISLDLGTAGTPGGITQFNSPSNLD 338 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ L + + + PVA + L + Sbjct: 339 STVVDGAIFGAFAGVEVSDDGFLSARFTNGVVRRVYQLPVATVFNPNGLASVGGA--SFQ 396 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + L+ I+ V++ E S LI +++Y+ S+++I D+M Sbjct: 397 ITEDSGAFTLNAPGSGASGTIAAKTVENSNVDIATEFSNLIITQRAYSASSRIITTADEM 456 Query: 472 LQTLLEGVK 480 L ++ + Sbjct: 457 LAEAIQMKR 465 >gi|254294563|ref|YP_003060586.1| hypothetical protein Hbal_2209 [Hirschia baltica ATCC 49814] gi|254043094|gb|ACT59889.1| protein of unknown function DUF1078 domain protein [Hirschia baltica ATCC 49814] Length = 458 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/488 (12%), Positives = 137/488 (28%), Gaps = 38/488 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVT 54 MS+ + + A+ NI N + + R T N + Sbjct: 1 MSIGSALLAGTAGLRANASAMAATSENIANVNTVGFKRIRNDFTAMLNNQNYQSSYSAGA 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R+ + + L + S + + + + ++ + Sbjct: 61 VRATATTLMREQGTLQSSSVSTHMAISGEGYFVTRARGGDATSFDEYSYTRAGQFAPDEG 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y KN + L I N + V + + ++ LS Sbjct: 121 GYLKNTAGQYLYGWPIVNDQVVNASPTDLTA-----LSAVRVSGYGGVAEASANLSITAN 175 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N + + + + + + + + E Sbjct: 176 LN---ADQEVNPATYTAGDMAAGNITPDFTTPLEVYDSKGGRHTVNFSFLKTANANEW-- 230 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + ++ + +G ++ + G + D V + Sbjct: 231 -EVEAYVTPSTDIEGVTDGLLANGKMIFTASG-------------LIDPVATNALADGFD 276 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + S+ + P GI+ D +L G + QY S+ Sbjct: 277 PEGSISIGASDPASVGTT----PRWADGLGIEAQDIQLDLGNGNSTTGLTQYSSDSILDT 332 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ +I Y + F++ PVA L+ A + Sbjct: 333 STVDGVPFGSLASVDVDEDGVVIAQYTNGFSRKIFQVPVATFGNEGGLIAQAGG--SYRS 390 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + +L + S + V+L EE S LI +++Y+ ++K+I D+ML Sbjct: 391 GPETGDMNLRAPKSGEAGEVISSALESSTVDLAEEFSNLIVTQRAYSAASKIITTADEML 450 Query: 473 QTLLEGVK 480 L+ + Sbjct: 451 NELISIKR 458 >gi|229827760|ref|ZP_04453829.1| hypothetical protein GCWU000182_03152 [Abiotrophia defectiva ATCC 49176] gi|229787959|gb|EEP24073.1| hypothetical protein GCWU000182_03152 [Abiotrophia defectiva ATCC 49176] Length = 618 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 47/418 (11%), Positives = 115/418 (27%), Gaps = 26/418 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN 49 S + + + NI NA + Y R+ Sbjct: 3 STFFGLDIGTTGLHTYQAALNNTAHNITNAKTEGYSRQQVNRQAKDPIAIAQRYGMVGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V +D ++ G + + ++ + L + Sbjct: 63 VIANKISQIRDEYYDLKYRTANTVNGAYESRTYYLKNIQNFL-NEIKDGGFNTNFKNLFN 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + K+ +++ A + + FN + ++ + + + I+ + + + + Sbjct: 122 GMSEVEKDPRSKSARAQMVNQAYALTEYFNNLSENLKNTQNEVNFNIKNTVDTINSYADQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-----------NNNDMV 218 + + I S A+D DQR++L+ K+SE+ +S Sbjct: 182 IATLTKQINMIEVSGGFANDLRDQRNLLVDKLSELADVSVKEERIGEELSGSLSGVTTYT 241 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALL 276 V + G + I N + ++ ++ + + ++ GK+ AL Sbjct: 242 VKINGGYLVNNYRANRIETVPRNYKSNINDVEGLYDLKWSDGQNFSTHNSHLGGKLGALF 301 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++RD + A + +D + E + + G Sbjct: 302 EMRDGNNRASLRCNVKEASEGDTELTLEDTNINSVEAMNFPPKGRITVGGEEYEYTGFEV 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 I +P + K ++ I + + D + Sbjct: 362 KIEKDPDTGKDKFKYIFKLKEDKPITKDITEDDKIVAKIGEQVNFKGIPYYMDQINNF 419 Score = 96.6 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 92/288 (31%), Gaps = 11/288 (3%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 E I+++ N + G +E ++ EK + + Sbjct: 329 EDTNINSVEAMNFPPKGRITVGGEEYEYTGFEVKIEKDPDTGKDKFKYIFKLKEDKPITK 388 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA-- 320 + K K Q+ +P + +Q++ R F+E + + G Sbjct: 389 DITEDDKIVAKIGEQVNFKGIPYYMDQINNFVRKFSKEFNEIHKTGEDLDGNKGADFFTG 448 Query: 321 -------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + + L + +E + + + SV++ F N +A Sbjct: 449 VDEVTGENYKFKVPGTLDEDGNEVTEFSSEDETYYRITAHNYSVARTFKENPSLIAAAKT 508 Query: 374 LINHYCDSFNKNFIFD--PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + ++ + + + E+ ++ + + + + Sbjct: 509 ISDGVENTEVMKKLENLQKDRTMFDQGKPEEFYQSLTSDIGVDTKTAETFSTNQDKMVKA 568 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I+ + GV+ EE L+K + YN+S K+I +++ L+ + Sbjct: 569 INNQRLSISGVDNDEEAMDLVKFKNCYNLSAKVITVMNEIYNKLINEM 616 >gi|159045919|ref|YP_001534713.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] gi|157913679|gb|ABV95112.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] Length = 434 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 51/490 (10%), Positives = 130/490 (26%), Gaps = 66/490 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54 M++ + N + N + + A+I NI N+ Y R + S + Sbjct: 1 MTISSSLNAGVSGLNANATRLATISDNIANSSTYGYKRAEADFQSLVINGNSSGTYSAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI--SKLRDS 110 R + D+ L S+ + + + D++ P + + Sbjct: 61 VRVTTTRVIDEQGPLVTTSNPTDLAVGGSGMLPVTTLSALDENTGGYPLSLMTTGSFSPN 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + +L V + + ++ I + ++ + + Sbjct: 121 ADGVLTTETGMVLMGWPAAPDGTVPEFPRDTVDGLEPITVNLNQFAGDPTTRI------- 173 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + + + D +D + + Sbjct: 174 -DLGVNLPASETEAGSSGDSIDLSIEYFGNLGTSETLGVTYTPQVPAS------------ 220 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + T+T ++ + G + S G + ++ + Q + Sbjct: 221 -----GASNTWTMTITDSASGGAVVGEYELTFDDSRGAGGTLASVTAVSGGPFDPVQGTV 275 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + A + G Q + Sbjct: 276 EITADG-----------------------------GPVTVKIGSVGDENGMTQLSDTFAP 306 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + S + + ++ Y F + P+A + L +R++ + Sbjct: 307 VSISKNGSPVGNLSTVEVDPNGFVVAVYDTGFTRTIYQVPLADVPNPNGL--LSRDNQSY 364 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S L + + ++ EL+ LI +++Y+ + K+I D+ Sbjct: 365 MISPESGPFFLWNAGEGPTGDVIGFALEESAADVAGELTRLITTQRAYSSNAKIIQTVDE 424 Query: 471 MLQTLLEGVK 480 MLQ + Sbjct: 425 MLQETTNIKR 434 >gi|89092142|ref|ZP_01165097.1| flagellar hook-associated protein [Oceanospirillum sp. MED92] gi|89083877|gb|EAR63094.1| flagellar hook-associated protein [Oceanospirillum sp. MED92] Length = 750 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 56/443 (12%), Positives = 139/443 (31%), Gaps = 11/443 (2%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENKNM 62 ++ A +NI N + + Y R+ + V + Sbjct: 2 SLLLLGTQSLQANQSALAVTGQNISNVNTEGYSRQRPVFESREGRAGVVLEDVDRIADAF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + S+ + F + + A D S + + +L++ + Sbjct: 62 LNRQIWTDSATFSSYDAFEDFANELDNLLASDV--TSVSKAMDDYFGALQTAVDDPVSLP 119 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + I E +VQ FN +++ + +E ++ + + + +N I A Sbjct: 120 NRELFIAQTEALVQRFNDLDANIRRQNDTINGRLESNVAAINVISANIAQLNQDIAVAQA 179 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + LD+RD L+++S IG +TI + ++ V+ +G L + + + Sbjct: 180 SGNVNSELLDKRDAELEELSTYIGFTTIEQPTGEVSVFVGNGEPLVVGLSANQMTTLFSP 239 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + I V + + + GKI ++ RD ++ +++ +A VL + + Sbjct: 240 ADSSQLNIGLQIGNSV--GDITNQLSGGKIGGVIDYRDDILGDTLDEMGRIALVLAETMN 297 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NPSFLRDGGSVS 358 + + G I I + +S + + L Sbjct: 298 SQHQKGMDLNGAAGGLIFTDINSASAVSSRVLSARDNATLVTAGITINDVTALEAAEYSL 357 Query: 359 KKFLWNVKNLA-GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + N L G + + + L + + ++ Sbjct: 358 EFNDGNTFTLVRGDDEQRWSNSNISLTQVASASDVDQDGEYFLDTVSGDMTLRVDGFTLT 417 Query: 418 SHDLHMKSQVVFNHISESYSNTV 440 + + + + Sbjct: 418 MSTPGAFATGDQFILRPTRNAAS 440 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 55/416 (13%), Positives = 119/416 (28%), Gaps = 18/416 (4%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDIL 123 L A ++ + + N S T S + + L Sbjct: 350 LEAAEYSLEFNDGNTFTLVRGDDEQRWSNSNISLTQVASASDVDQDGEYFLDTVSGDMTL 409 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 F T + + + +A EI EI+ + + A T + Sbjct: 410 RVDGFTLTMSTPGAFATGDQFILRPTRNAASEISAEINIASQLALAAPLATSASAENTGT 469 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + D +S + G T N + + T+ G+ DI NS Sbjct: 470 GTISVSI---TDKDYNDLSAVPGAMTPPVNVSFSPLATAPGSI---NSTNDIEARVTNST 523 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + + P+ + + + V G + + V NQ++ L+ + Sbjct: 524 DLANVQFPVTVTYTAGAPGTYAVVDNGG----TTLIAAGVADGNNQVNVPGYGLLLDVNT 579 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + L + + + + + + + + Sbjct: 580 VPQNGETYQISHMSDTGVMSYVLTDGDGDRMVGDYTSGQSIQLSGYEITINNNPNVNDKF 639 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 V G + A + + + ++ + + + Sbjct: 640 TVNPNTG-----GVSDNRNALLMSDLQSAKLIEGASYQDKYGQTVERVGTQAAVAQVNAQ 694 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V + E ++ GVNL EE + L++ +Q+Y S +LI + +LL+ V Sbjct: 695 AGKSVLDSNKELRASIAGVNLDEEAAKLVQYQQAYQASAQLIRAAQTIFDSLLQSV 750 >gi|148554183|ref|YP_001261765.1| flagellar hook-associated protein FlgK [Sphingomonas wittichii RW1] gi|148499373|gb|ABQ67627.1| flagellar hook-associated protein FlgK [Sphingomonas wittichii RW1] Length = 450 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 65/491 (13%), Positives = 147/491 (29%), Gaps = 58/491 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47 + + ++ A++ N+ NA+ + Y RR + + Sbjct: 1 MSDLLQIGRSGVVAYRTALATVGENVSNAETEGYSRRKVVLNESAVSAANSYIYRSSAVF 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + + N +S + ++ E D + +S + Sbjct: 61 GGVEAGSVQRIFDNYRSTYARFANSEAARADAKATWLDTAEAAL--DDSDVGLGVKMSSV 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + E+ S ++S D T++ V F T++ ++ E + ++ L L Sbjct: 119 FTAAEAMSADVSSDTNRLTLLTALGNAVNQFKTTSTALRSAADGVSTEAQNAVAKLNDDL 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 L +N A++ A DQRD +LQ IS +GI + ++ V +T+ Sbjct: 179 RTLVQINSALRRAGAGSSGQALLQDQRDQVLQSISNAVGIDVKLEDDGRATVKLLGDSTV 238 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 N + S + G S G + L + ++ + Sbjct: 239 TLVDAASTNAGYVGLVASDSGRFSLIASGFG--SEMAMNPQSGSLAGLADAAN-IIASRR 295 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + LD +A ++ + + + Sbjct: 296 DSLDAIAGRFAQVINDWNSAGVDRNG---------------------------------D 322 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P G+ + +L+ + + + Sbjct: 323 PGAALITGTTADTLEVTTSDLSKIAAAKGGVANG-----NALALKDYRNSTGPEAQWSQL 377 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + ++ S + + + + GV+L E + L++ +Q+Y+ S ++I Sbjct: 378 VSAHAQSVSAAKAEKTATATQRDGAYQQLDEVTGVDLDVEAAQLLRFQQAYSGSARIIQV 437 Query: 468 TDKMLQTLLEG 478 + LQ +L Sbjct: 438 ARETLQEILGL 448 >gi|329901236|ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium IMCC9480] gi|327549168|gb|EGF33760.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium IMCC9480] Length = 644 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 61/454 (13%), Positives = 154/454 (33%), Gaps = 16/454 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + + Q+ A + NI NA Y R+ + T + TV Sbjct: 1 MGNILSVGQSGLLAAQLGVTTTGHNIANAATPGYSRQVVIQTSAGGQSSGDGFVGQGTTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + ++A ++ + + + AD + + +S ++++ Sbjct: 61 ASIQRIYDAYTATRVNAAQTSKASLDAYSTQVSQINNLLAD--SSTGLSPTLSNFFNNVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + +T++ E + F + ++ +I + +I + ++ + ++ Sbjct: 119 GLAAAPNGSAQRQTLLSAGESLAARFQSLDSQLSQIGEGVNAQIVSNVGSINAYGQQIAK 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +NDAI+ + A +D LDQRD ++ ++S+++ ++ + + V +G + Sbjct: 179 LNDAIEKASSGAGGAPPNDLLDQRDQIVSELSKLVKVTVDNQAGSGYNVSIGNGQPIVVG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S T S+ + G + S S++ G + LL R + + +N+L Sbjct: 239 TT-TFALSIATSQTDASKLVVAYQSGSTLLSLPDSSISGGTLGGLLDFRTNSLDPARNEL 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A L SF+E+ + + + G L + + ++ S+ Sbjct: 298 GRVAVGLATSFNEQSKLGVDQNGIAGKDFFKVAGPLVSPSKLNSASNPAISATIASSTDA 357 Query: 351 LRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S + + D + Y +F + + + + Sbjct: 358 ASLTASDYSVAYDGINYTITRLSDKFSAYTGAFPPTVGPVDGITFSVGTGTMAANSSFLV 417 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + S + + + G N Sbjct: 418 RPTISAAGSIAVKLTDTTEIAAAAPVVLAATGTN 451 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 54/440 (12%), Positives = 124/440 (28%), Gaps = 15/440 (3%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 S NV++ + L +S +L+ ++++ ++S D +S + Sbjct: 219 NQAGSGYNVSIGNGQPIVVGTTTFALSIATSQTDASKLVVAYQSGSTLLSLPD---SSIS 275 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S + + + LG+ + A + + D K +S Sbjct: 276 GGTLGGLLDFRTNSLDPARNELGRVAVGLATSFNEQSKLGVDQNGIAGKDFFKVAGPLVS 335 Query: 162 NLRRFLSELTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + ++ I T + A D+ D + I+ + + V Sbjct: 336 PSKLNSASNPAISATIASSTDAASLTASDYSVAYDGINYTITRLSDKFSAYTGAFPPTVG 395 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 DG T + + T+ + S+ + + + + + A Sbjct: 396 PVDGITF-----------SVGTGTMAANSSFLVRPTISAAGSIAVKLTDTTEIAAAAPVV 444 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 +++ + + P A + D + S Sbjct: 445 LAATGTNGGNGKISAGSVDASFLTTPPALPLKLKFSNGTFDTVPASLTTPISYTSGANVT 504 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 N + G G + KN + A + TL Sbjct: 505 LNGISFNITGAPLEGDTFTIAANTSGVATGDNRNVVALGALQTKNLLVGVGAANTPSTTL 564 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + + GVNL EE S L++ +Q+Y Sbjct: 565 AGAFGLMVNNVGNKTREVMANAASEGKLVDSVLAIQQSQSGVNLDEEASNLLRYQQAYQA 624 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 + K++ + LL + Sbjct: 625 AGKIMQTASTLFDVLLSLGR 644 >gi|85710170|ref|ZP_01041235.1| flagellar hook-associated protein 1 [Erythrobacter sp. NAP1] gi|85688880|gb|EAQ28884.1| flagellar hook-associated protein 1 [Erythrobacter sp. NAP1] Length = 452 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 57/488 (11%), Positives = 136/488 (27%), Gaps = 52/488 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENV 50 + + ++ A +NI NA N +YVRR + S V Sbjct: 3 TNLISIGRSGAAAAKASIELTAQNIANASNPDYVRRSLQLTEFVGVARIDFQSSSSLAGV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + N + + +S + + + E + + + Sbjct: 63 RIGGIERPNSELIQRRARDSASDLARAEAELTGLRDAETAL----EQSGLFRGLVDFEAA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + ++ L +++A ++ Q F + + R + ++ + + + SE+ Sbjct: 119 LRVLEGDPTDQALRAGALESARQLAQTFQLADFSLGNARQLVEDDVNVGVDRINGAASEV 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD RD L++IS GI V Sbjct: 179 ARINLELANARDGTAAQASLLDARDAALREISSEFGIIARFDEFGAAEVRLVG------- 231 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + E + ++G S P+G A + + Sbjct: 232 -----------TPSPAGEEGLLLVEGGKFSELSAQIDPQGT--ASFNFGGAPFAPLSGAM 278 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 A L D S + + + S+ Sbjct: 279 AGRASALT------DLSGRQSSLDAIAGQTIAQANAAQASGAALDGSAGQPLFSGSDAGT 332 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + + ++ + + + + + Sbjct: 333 IELALASGEDLALAPAGSPPASRDTANLSNALDA---------LGADDGPIASVDRLLLS 383 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L S ++ + + GV+L E + LI+++Q++ ++++I + Sbjct: 384 LSSRISGIETTREGLAIINSSAQADLLSETGVDLDAEAASLIRLQQAFEANSRVIQVASE 443 Query: 471 MLQTLLEG 478 + T+L Sbjct: 444 LFDTILGL 451 >gi|54307270|ref|YP_128290.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46911690|emb|CAG18488.1| Hypothetical flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 472 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 46/480 (9%), Positives = 114/480 (23%), Gaps = 19/480 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 N + S+Q SI NI N Y T + V + Sbjct: 2 SMNIGMSGLIATSEQMNSISHNIANVGTAGYKSSRTEFQDIYAPEFGGGEMNGVEVAAIR 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ + E ++ + Sbjct: 62 QSFKNGTTTPTGRNGDLAING-------EGFFMVENKGQQMFTRNGVFNLDKDGNLVASD 114 Query: 120 EDILGKTVI-DNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLSELTVVNDAI 177 L + + E + A + ++ +E++ + D Sbjct: 115 GSHLQGYGVTGTGQIQTGTITDLTVETGDMPARSSTKVNMEVNLDANSLAIVPKTPFDPE 174 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T + D + + + + ++ T ++ D Sbjct: 175 DPSTFTSSATTTVYDSLGAEHEVTQYYVK-TADNAWDVHYLIDDEKTATKTASMAFDSEG 233 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + Y + +++ + +A D V+ ++A Sbjct: 234 KLSAIYDPANPVVATYLNASTKAREAVAASTVADAALAANPTDKVLIDAAAT-AKVAAKT 292 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + ++ + + + + Q I + Q+ + ++ Sbjct: 293 ATDAAALAKVSADPIAAATVAVDLAFTPNNGSANQTIKFDVAETTQFGKEFAITKNSQDG 352 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + Y + K +A L + W + S Sbjct: 353 HAPGQVAGWYFEGDGRVFARYSNGQTKVQGQVSLARFPNQEGLQQAGN--TRWTQSFSSG 410 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ V+L E+ L+ + +Y + K I +M Q L + Sbjct: 411 AALVGAAGTGQLGNVRTGMYENSNVDLSSEMVNLMSAQSNYQANAKTIKVAQEMTQILFQ 470 >gi|86356330|ref|YP_468222.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86280432|gb|ABC89495.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 434 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 53/481 (11%), Positives = 117/481 (24%), Gaps = 48/481 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119 + + I + + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + + I + L + Sbjct: 121 GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSGANIAPVAPA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S + A D + + ++ N M + T++ P Sbjct: 181 TLPSANAATTTADTK--------KFSMVAYDHLGNKVMYDFYFTKTSVVTPPPATGTAST 232 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +F + + S G A++ + L A + Sbjct: 233 WEV--------AVFRNADAATGGTTSFPYTGGAGAVVASGNLTFDRNGKMLTGGALPIAD 284 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + I+ + Q + + + Sbjct: 285 TKN----------------------------ALSINMDLSGFTQLGAAFAGTGTPNGQAA 316 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 317 SPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 373 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 374 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 433 Query: 480 K 480 + Sbjct: 434 R 434 >gi|110632640|ref|YP_672848.1| flagellar hook protein FlgE [Mesorhizobium sp. BNC1] gi|110283624|gb|ABG61683.1| flagellar basal body FlaE [Chelativorans sp. BNC1] Length = 422 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 116/481 (24%), Gaps = 60/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI N+ Y R T + T + S Sbjct: 1 MSLYGMMKTGVSGMNAQANRLSTVADNIANSSTNGYKRATTEFSTLVVPGTQGSYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + + N P + N S Sbjct: 61 TSTVRNAVSAQGVLQYTTSITDLAVNGSGFFIVQGSNGQPYLTRAGSFVLDGDGRLVNSS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L A ++ I + + + S ++ I Sbjct: 121 GYQLMG--YSYANGTPSATANGYAGLEPIT--IKQPELVATPSRNGVFSANLPLDAEIVD 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A + A D + + + Sbjct: 177 TGAGQSTAGDNTST-----------------------SEYSVKTSLVAYGNRGEQVLLDV 213 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T E D + + G G + Sbjct: 214 YFTKTGDDEWEVAVFDRADATPDTGFPYASGPLAT------------------------- 248 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D + + + + + + Q S + Sbjct: 249 -----DQLTFDPTTGKLTGTSVTGVTIPVPGGDDLELDLSQLSQLDSGFQVYDAEVDGTP 303 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y D K P+A + + L + N + E S + Sbjct: 304 PTSIDSIEISAEGIVYAQYADGSFKPLYRIPLANVTSPDQLEVLSGN--AFAETAASGAV 361 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + I+ + V++ EEL+ +I+ ++SY ++K+ +++ L+ Sbjct: 362 RIGFAGSDGLGDIASGALESSNVDIAEELTSMIESQRSYTANSKVFQTGSDLMELLVNLK 421 Query: 480 K 480 + Sbjct: 422 R 422 >gi|167630298|ref|YP_001680797.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] gi|167593038|gb|ABZ84786.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 42/479 (8%), Positives = 111/479 (23%), Gaps = 38/479 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + +I NI N + + + + Sbjct: 1 MMRSLFSGVTALRNHQTRMDTIGNNIANVNTIGFKKSRVTFADA---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + SS G + + + + S+ Sbjct: 45 LNQTIRGASSPQG---------GRGGTNPMQVGLGMNIATMETVFTPASVQGTGKNSDLA 95 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + ++ + T A + + + ++ Sbjct: 96 IEGDGFFLLDDGGARYYTRAGNFDLDTEYNFIRTDNGMKVMGYIADATGEIDANGDPVPI 155 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVPRDINFEKMN 241 + D ++ + + + + +Y S G + Sbjct: 156 NIKDKLQMTASATNRVEFNKNLYSLQASAKPIQKSIEIYDSRGGKHNLVLTFKNVSNATT 215 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + D + G + + F Sbjct: 216 PNTWQVSARITTEDPQSKKITTANGYIIGTM----------LFSTNGLFKSFQVSDSVDF 265 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + +P + D K + + Q+ S + + + Sbjct: 266 KFPGLGVDDIGAMPNGTYTAKFEIPDVKKDTKLYLDLHAITQFNSETTIDKLSQNGYADG 325 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + L Y + N+ V + L + N N S Sbjct: 326 DLKSYAIDAAGVLTGTYSNGQNRKMAQVAVTTFSNPAGLFKAGSNLYTR--TNNSGEPKT 383 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I+ V+L +E + +I ++ + ++++I +D ML+ L+ + Sbjct: 384 GQPAVGGRGAITPGALEMSNVDLSQEFTDMITTQRGFQANSRIISVSDSMLEELVNLKR 442 >gi|75675293|ref|YP_317714.1| hypothetical protein Nwi_1100 [Nitrobacter winogradskyi Nb-255] gi|74420163|gb|ABA04362.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi Nb-255] Length = 622 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 66/449 (14%), Positives = 145/449 (32%), Gaps = 21/449 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-----TMTTISPENVTVVTQ 55 MSL + + A + + + N+ NA+ YV + +T V V+ Sbjct: 1 MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQVVTGGMGSGVRVIGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 L ++ + + + + + ++ +L++ S Sbjct: 61 NRTLDAYVQSQLRTENAGGAYASHIAGVLGQLQNVYGTPGNDGTLEAAYNRFTSALQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +V++ A+ + N + +Q +R++A++ + +S + ++ +N Sbjct: 121 ASSGNPAAQSSVLNAAQALAHQLNATTSGIQTLRSNAEQSLSASVSQANAAMQQIAQLNQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPRD 234 ++ A A +DQRD + ++S ++ I + N V+T+ G L Sbjct: 181 RLQSMGAQDPAAATLMDQRDAAIDQLSGLMDIRAVTDGANQTSVFTTAGVQLVGGVYAST 240 Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + F +S T +S+ N +G + + G+I A Q+RD + Sbjct: 241 LTFNAQSSLTASSQWNADPAKSSVGTIICQLPNGARIDMIASQGINSGQIAADAQLRDKI 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + QNQ+D+MA L + S+ P F D L + Sbjct: 301 LVQAQNQVDQMAATLASALSDVTTSGAPVTGPPSGFDLDLSGILPGNAFRVTYTDSANVS 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKN---LAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + N + + + N + + + Sbjct: 361 YTVTVVRVDDPSALPIPNAAANPNDRVIGVDFSGGLASVVSQLNAQIGAASHLMFSASGS 420 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 LL A + G + + + Sbjct: 421 LLRVADDGSGQSTVSAASATTTVQSLASG 449 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 110/412 (26%), Gaps = 10/412 (2%) Query: 72 SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + F + + + + S L S + + + Sbjct: 214 AVTDGANQTSVFTTAGVQLVGGVYASTLTFNAQSSLTASSQWNADPAKSSVGTIICQLPN 273 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 + + +I ADA ++ + + + A+ T S Sbjct: 274 GARIDMIASQGINSGQIAADAQLRDKILVQAQNQVDQMAATLASALSDVTTSGAPVTGPP 333 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 D+ L I ++ ++ T+ + Sbjct: 334 SGFDLDLSGILPGNAFRVTYTDSANVSYTV----TVVRVDDPSALPIPNAAANPNDRVIG 389 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + G + S G L+ + + + V S + + Sbjct: 390 VDFSGGLASVVSQLNAQIGAASHLMFSASGSLLRVADDGSGQSTVSAASATTTVQSLASG 449 Query: 312 ENVPGLFIADGI-----KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F G++ I VN ++PS L + + Sbjct: 450 DPQLPFFTDRASLYTGAITGSASQITGLAGRIQVNAALLADPSKLTVYSTSPVTPAGDTT 509 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 D + + A TL + + + + + + Sbjct: 510 RADFIYDRLT-FASFSYAPNTGLGAAAAPFQGTLSSFLQQFVSLQSGAATTARQVAQGQS 568 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +V N + E + + GVN+ E++ LI ++ SY + ++ M+QTL++ Sbjct: 569 IVVNTLQEKFDDKSGVNMDTEMANLIALQNSYAANAHVMTVVQSMMQTLMQA 620 >gi|119503650|ref|ZP_01625733.1| flagellar hook-associated protein [marine gamma proteobacterium HTCC2080] gi|119460712|gb|EAW41804.1| flagellar hook-associated protein [marine gamma proteobacterium HTCC2080] Length = 556 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 54/394 (13%), Positives = 132/394 (33%), Gaps = 14/394 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + ++ +NI N + + Y R+ + V V Sbjct: 1 MANTLGIGTTALSALQRAISTTGQNIANVNTEGYSRQSVSLSARPAQDIGAGYLGSGVQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + +++ G L + + M D + S + S E Sbjct: 61 TSIDRAYNQFLANDVQQRTASSGYYSLYANAAERVDSMLGDP--STSIAQAMDSFFASAE 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + + ++ NAE +VQ F+ + + + + +I +S + + + Sbjct: 119 AVANSPTSLPERQVMLSNAETLVQRFDYIVSRIDDVTKEMNSQINSAVSEINQLAGGIAT 178 Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N+ I + +D LDQRD LL ++S ++ T+ +++ + V+ G L Sbjct: 179 LNNEIAKVSGGSTGLPNDLLDQRDALLVQLSSLVDTKTLAQDDGSLNVFIGRGQPLVTGS 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + + ++ + V SS+ + GK+ A L + D VV + +L+ Sbjct: 239 VAETLATQTDPELGSTSLVTLSA-FVAGSSDVSDFLTGGKLGAALTVTDEVVNPTRRELN 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + + + V G+ + + + T + Sbjct: 298 LLAVGFAETVNAIQEAGDDLQGVDGVALFTETEGVVKSAASVDDSTANSGNATVTFTVTD 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + +L + N Sbjct: 358 AKLLTGDSYRVDYTATGVNLRNLTTDAVTTLTAN 391 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 36/400 (9%), Positives = 96/400 (24%), Gaps = 18/400 (4%) Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + +S+ +L L ++ + + + RD+L Sbjct: 147 IVSRIDDVTKEMNSQINSAVSEINQLAGGIATLNNEIAKVSGGSTGLPNDLLDQRDAL-- 204 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 V ++ + + + ++ ++ + Sbjct: 205 ------------LVQLSSLVDTKTLAQDDGSLNVFIGRGQPLVTGSVAETLATQTDPELG 252 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + ++ +A + D D + + + ++ + F Sbjct: 253 STSLVTLSAFVAGSSDVSDFLTGGKLGAALTVTDEVVNPTRRELNLLAVG----FAETVN 308 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 I + V + +GVV S+ A + + + + Sbjct: 309 AIQEAGDDLQGVDGVALFTETEGVVKSAASVDDSTANSGNATVTFTVTDAKLLTGDSYRV 368 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 G + DG++ + + +P F Sbjct: 369 DYTATGVNLRNLTTDAVTTLTANPQTVDGVRVTYTAQAATGAAGANQGDAFIVDPLFQAS 428 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 K A + + + D + T + N + + Sbjct: 429 SLFAVKIDDPAKIAAASNNGAAGNNSNMLAMIELRDQSLLKGSTATYGDVYNNLLSDVAV 488 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + + S+ GVNL EE + L++ Sbjct: 489 RTQRAQSSAETETALLGSALDRQSSLQGVNLDEEAANLVR 528 >gi|300870390|ref|YP_003785261.1| flagellar hook protein FlgE [Brachyspira pilosicoli 95/1000] gi|300688089|gb|ADK30760.1| flagellar hook protein, FlgE [Brachyspira pilosicoli 95/1000] Length = 441 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 44/491 (8%), Positives = 110/491 (22%), Gaps = 63/491 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + N + + NI N + + + + + Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNISNVNTYGFKKGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + E + N+S Sbjct: 61 GINPQQVGLGMQVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKKGNSSYYTRNGAFSI 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N S + + + +E I + Sbjct: 121 DKNGYLVNPSNGYKVQGWNAVLNPETG----------MMELNTAAGVEDLIIPVGSKDPA 170 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N D + + D T + Sbjct: 171 RATQNTKFFCNLQKNSDT---------------------------HQADLTIYDSTGIPR 203 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + N +N + + E V VS+ L+ + + Sbjct: 204 QLRATFNRTDVNRWDMVIEIPEATEGSVSVSAGDPVENGGNNTFQLVFNDAGSLISVSDG 263 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + ++ + E + L G Q+ S + Sbjct: 264 TNTQTEGVLMPNVSFTYTGTDGE-----------VNQTINLTMGEVGLFNGITQFESPST 312 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + K +A L + Sbjct: 313 TKAIEQDGYTMGMLEGFSFDDSGQITGVFTNGNRKTLGQVALAKFANAGGLEKAGDTL-- 370 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E N S + ++ + + I V+L E+ + +I ++ + + + I D Sbjct: 371 FVESNNSGAANIGVAAAEGRGSIKAGTLEMSNVDLSEQFTDMIVTQRGFQANARTITTAD 430 Query: 470 KMLQTLLEGVK 480 ++LQ ++ + Sbjct: 431 QLLQEVIALKR 441 >gi|121533754|ref|ZP_01665581.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] gi|121307745|gb|EAX48660.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] Length = 420 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 118/478 (24%), Gaps = 58/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + I NI N + + Sbjct: 1 MMRSLFAGVSGLRNHQTRMDVIGNNIANVNTIGFKASRVNFQDILSQTMQGASSGIGNQG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L S ++ + + +S S + + Sbjct: 61 GTNPIQI--------GLGVSIASIDTIFTDGSFQPTGKQTDLSIQGKGFFVLSPDGGKTE 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + NF + + AD ++ +R ++ Sbjct: 113 VFTRAGNFDFDRLGNFIVPGTGYKVVGWKADSNGNIDTDPSKRTTIDI-----------P 161 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +S T V+ + D+ TL + + + Sbjct: 162 VGTQMPAQATKAITFANNLSADAANGTTVKVSYDIYDNLGKRYTLPVVFTKTGDTTWDYT 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + TSE + V+ GK+ + + + Sbjct: 222 ISNTSEYTVATLPATSVTGRLTFDAATGKLSSTTPPTVTTID------------------ 263 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + GI QY + + Sbjct: 264 -------------------ISYTTPAQKVSGIQLKFDQVTQYGGDTTLQIVDQDGYPPGS 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + +N +A N L + + + S + ++ Sbjct: 305 LEGVTIDPNGVIVGRFSNGKTRNLAQVALATFNNPAGLTKIGDSLYAV--SSNSGTPEIG 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ V+L +E S +I ++ + ++K+I TD+MLQ L + Sbjct: 363 VTGSGGRGKLNPGTLEMSNVDLAQEFSNMIITQRGFQANSKIISVTDEMLQELANLKR 420 >gi|89056664|ref|YP_512115.1| hypothetical protein Jann_4173 [Jannaschia sp. CCS1] gi|88866213|gb|ABD57090.1| flagellar hook protein FlgE putative [Jannaschia sp. CCS1] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 51/490 (10%), Positives = 124/490 (25%), Gaps = 61/490 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N + + + A+I NI N+ Y R + + Sbjct: 14 MTISSSLNAGVAGLSVNASRLATIADNIANSGTNGYKRATADFSSMVIDQGGGTYSAGGV 73 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT---HYISKLRDS 110 R + D+ L ++ + F + + + R Sbjct: 74 RVTTGRLIDQSGALATTNNGTDLAVRGRGFLPVTRSSAVNAAAGAELPLYLATTGSFRTD 133 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + Y S L D V ++ ++ ++ + ++ + + S Sbjct: 134 ADGYLVTSSGVTLMGWPADADGNVPSFPRDTSAGLEPVQVNVNQFTSEPTTRI----SLG 189 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + +S ++ D L S +T + + Sbjct: 190 VNLPGTDTTSESSGDTRQLSVEYFDNLGTSQS-------------IEAFFTPTVPVVGDP 236 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + + + Sbjct: 237 ASNTWTMTLRDSASNNAVIGEYTVVFDDSRTG---------------------------- 268 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 I S S+ P+ G + + + ++ G + Q N + Sbjct: 269 ----GGTIQSVSQPLPVTGGGWSATEGTLTVDVLGGPIEINIGAQGSGSGLTQLSDNFAP 324 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 S + + ++ + P+ + L+ Sbjct: 325 TSISKDGSPVGNLVSVEVDPNGFVKANFDVGITRTVYQIPLIDLPNPNGLIAEDNQLYTT 384 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S S L + ++ EL+ LI+ +++Y+ + K+I D+ Sbjct: 385 --SAESGSFFLWDAGDGPTGDVVAFALEESTTDVAAELTQLIQTQRAYSSNAKIIQTVDE 442 Query: 471 MLQTLLEGVK 480 MLQ ++ Sbjct: 443 MLQETTNIIR 452 >gi|167750617|ref|ZP_02422744.1| hypothetical protein EUBSIR_01594 [Eubacterium siraeum DSM 15702] gi|167656296|gb|EDS00426.1| hypothetical protein EUBSIR_01594 [Eubacterium siraeum DSM 15702] Length = 519 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 59/516 (11%), Positives = 153/516 (29%), Gaps = 46/516 (8%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD------------------TMTTI 45 + A + N+ N D Y R+ + Sbjct: 5 FLGLEIQKRSVQMAQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGL 64 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTH 102 S + V + DK +S + + S + E +D + N + Sbjct: 65 SSQGVFASGVSQTRDDYLDKRYRDNSCYVSEYNQQASIMSEIETALTNFSDTYENVGMAY 124 Query: 103 YISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + +L Y+++ ++ + L V + A + + F + +++ + ++ + Sbjct: 125 QFDQFKSALRKYAEDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLHSTLE 184 Query: 162 NLRRFLSELTVVNDAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGI 207 + R + E+ N I + ++ LD R+ L+ ++SE I Sbjct: 185 DANRIIEEIVEYNKQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDI 244 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + + + T G T+ + ++ + ++ + ++ + Sbjct: 245 HVDDNFDGSVKI-TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVL 303 Query: 268 PKGKIKALLQIRDSVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G IKA + + K ++ G D + Sbjct: 304 ESGSIKAYTDMINGNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGDESDDRL 363 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + I ++ + + + + + NL G Sbjct: 364 MFTSADGSPINAGNIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLL 418 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + + ++ L +N + + +S +GV+ Sbjct: 419 GMDDSVQIGKGDYEGSSYDFILFLNNRLAQNIEFAEKQCDMYTETATSLLDSRDAIMGVS 478 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE ++ + +N S++++ D+ L T++E + Sbjct: 479 ETEEGVNMLNYSKWFNASSRMLTTLDEALDTIIEKM 514 >gi|332531624|ref|ZP_08407521.1| flagellar hook-associated protein FlgK [Hylemonella gracilis ATCC 19624] gi|332038987|gb|EGI75416.1| flagellar hook-associated protein FlgK [Hylemonella gracilis ATCC 19624] Length = 701 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 48/399 (12%), Positives = 129/399 (32%), Gaps = 18/399 (4%) Query: 16 NASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSENKNMFDK 65 I NI N + + Y R+ + P V + T + Sbjct: 14 TNQNVLNVIGNNIANVNTEGYSRQQAILKSIPGQYMGTGYYGKGVEISTVTRIYDTFLTR 73 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S + ++ E + + +S L +S + ++ Sbjct: 74 QAATTKSVAAGDSVRSTYMQQLESLF--PGGESGLGASVSDLLNSFSDIANAPTDLTARG 131 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + AEE+ F ++A + ++R +++++++I+ + ++ VN I S H Sbjct: 132 VTLARAEELSNRFQSTAESINELRIGVNQQLDVDIAAINNLSQQIAAVNKQITQALGSGH 191 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 +D +D+RD L++ +++ I S++ ++ + ++ L + + Sbjct: 192 TPNDLMDKRDQLVRDLNKYIQTSSVTADDGSLTLFVGGSQPLVMGNTASTVALVSDDFNN 251 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ + G++ LL+ + + +N L MA + + + Sbjct: 252 PNQRKFAITFNGKERVIDTGLLGGGEVTGLLRFSNEDLVQAENLLGRMALSIGTVMNNQQ 311 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------QYRSNPSFLRDGGSVSK 359 + + G + + + + T+ P ++D + + Sbjct: 312 ALGLDLNGKTGNPLFNLASLPAAYSAKQNTGTLNNLSVGISLNDSTGTPDGMQDFLASNY 371 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + A + ++ D + F + Sbjct: 372 EITFTSTGAAPFTAVVTRLSDGVQQTVSFADNVANASTN 410 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/444 (10%), Positives = 117/444 (26%), Gaps = 8/444 (1%) Query: 38 RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 + + T V + ++ A + + + ++ + D + Sbjct: 264 KERVIDTGLLGGGEVTGLLRFSNE---DLVQAENLLGRMALSIGTVMNNQQALGLDLNGK 320 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + L +YS + L + + ++ + Sbjct: 321 TG--NPLFNLASLPAAYSAKQNTGTLNNLSVGISLNDSTGTPDGMQDFLASNYEITFTST 378 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 V + F + + + + D L + + R Sbjct: 379 GAAPFTAVVTRLSDGVQQTVSFADNVANASTNLEGEFDGLRLSFAAADVPAVGDRFVIAP 438 Query: 218 VVYTSDGTTLFETVPRDINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 S T+ T P+++ + + + + + G+ S + P + L Sbjct: 439 YSAASRSLTVAFTSPKELAMARPITAEAASYNKGALTLSGLATRSVPTTPGPDVSLVFLT 498 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + DP+ V +L + E Sbjct: 499 STQYIRTDDAYYTGSPLEAAITAGLRAGDPVY--DAAVVDYQTNATAGELYSYTPGNPIE 556 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 +P+ K + + + + + + Sbjct: 557 ADGRTTNLPFDPTTEWGWSLTLKGVPQPGDSFTVKTNPYTQLDAANAQAMMDLRDMKLFD 616 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + + I + + S+ + I + + GVNL EE + L++ +Q Sbjct: 617 KAPLTDGYASLIADIGTKTLGAKQTAAVSEQIAVSIEQDRTAISGVNLDEEAARLLQFQQ 676 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 +Y + K + + TL+ V+ Sbjct: 677 AYQAAGKAMQVAQTLFDTLIASVQ 700 >gi|170722892|ref|YP_001750580.1| flagellar hook protein FlgE [Pseudomonas putida W619] gi|169760895|gb|ACA74211.1| flagellar basal body FlaE domain protein [Pseudomonas putida W619] Length = 451 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 117/478 (24%), Gaps = 34/478 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENKNMF 63 FN + A++Q NI N + + V + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 64 DKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + S + + + ++ Sbjct: 62 LAAISQQFSQGDVNNTGNVLDMGIQGQGFFVLSDNGSRVYTRAGAFQADKNNFVVTSDGL 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L D ++ + + +L+I ++++ I + Sbjct: 122 RLQGYAADANGKIQKGVLS----------------DLQIDTSALQPKATSLIDQGINLNS 165 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-TLFETVPRDINFEKM 240 ++ + D ++ + T + VY S G E R + Sbjct: 166 SATDIPLEIDDGTGAMVPNLPFDPTDETTYTKSFPTKVYDSQGNEHTMEQFYRKTGTNEW 225 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 YT+ NP + S G + + + Sbjct: 226 TMYTLVDGRNPFDPASTTPLTGTISFSSDGSVSGMTADNTGH-----------PAGASFT 274 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + G+ ++ Y + + + Sbjct: 275 VTNNTFTMTGWVPAVEDAAGNWASNGAAGNADGMKLSMNSTTSYNTETARMSQSQDGYAT 334 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + ++ L + + ++ +A L + W E S Sbjct: 335 GILSSLSIDSTGVLFASFSNQQSRAIGQVALASFANEQGLQQIGG--TRWTETFSSGLPG 392 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + VNL +EL LIK + +Y + K I ++QT+++ Sbjct: 393 IDEPKTGTLGSVESNALEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQM 450 >gi|125972995|ref|YP_001036905.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256004792|ref|ZP_05429767.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281417206|ref|ZP_06248226.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125713220|gb|ABN51712.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255991242|gb|EEU01349.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281408608|gb|EFB38866.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316940769|gb|ADU74803.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 440 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 43/479 (8%), Positives = 119/479 (24%), Gaps = 40/479 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + I N+ N + + + + Sbjct: 1 MMRSMFSGVSGLQAHQTKMDVIGNNVANVNTVGFKSSRVTF----------------QEV 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F + L SS + + + T + D+ + Sbjct: 45 FSQTLKGASSPDPTTGRGGTNPMQVGLGLGVATIDTLMTRGSVQRTDNPTDLAIEGDGFF 104 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + K + + + N + + + + L + T D Sbjct: 105 IVKGGSSDTFKFTRAGNFGIDRLGNLVTGSGLNVYG--WQSYTKLPDGTYKFDTESQIEP 162 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + ++ K + + + + + GT+ + +S Sbjct: 163 INLYSDDVNKNKRMIAAKATTYAIFEGNLDASYSIYSSAASGTS--SNNRFTMPVTVYDS 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + N F V + + +F +Q + + Sbjct: 221 LGNSYKINISFWKTDVTGGVTTWTWQVDSGNGVTASGATGTILFDDQGQVIESSAVTPSI 280 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P + Y ++ S Sbjct: 281 TIIPD-----------------SSVGSQNINVKLDFSRLTMYAADSSAKATNVDGYPAGS 323 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS-HDL 421 ++ ++ Y + + +A + L + N ++ + S Sbjct: 324 LVTFSIGSDGMIMGIYSNGQQQPLGLIALASFDNPAGLEKVGENM--YIPTSNSGEFKKG 381 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +S V+L +E + +I ++ + ++++I +D+MLQ L+ + Sbjct: 382 VKAGTEGVGTLSPGTLEMSNVDLSKEFTEMIITQRGFQANSRIITTSDEMLQELVNLKR 440 >gi|254418692|ref|ZP_05032416.1| flagellar hook-associated protein FlgK [Brevundimonas sp. BAL3] gi|196184869|gb|EDX79845.1| flagellar hook-associated protein FlgK [Brevundimonas sp. BAL3] Length = 705 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 6/393 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL ++ N A + A Q NI N YVR+ T + V + Sbjct: 1 MSLTSIMNIATSGLQTAQAQLRVTSDNIANVHTPGYVRKTVDQTAAVTQGYGAGVDIARV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R + ++ ++ + + D + I KL S + Sbjct: 61 RLATDRFLQAAGMSANADAARETVRYELYDQIQTRFGDPSGDGGFFADIDKLFASYATLG 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + + I + + A ++Q R +AD ++ + + L ++ +N Sbjct: 121 ESPTSSAARQDTIYKTQALFNEAAGIATQIQAARQEADGRLQNAVETINPLLEQIAKLNK 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I T D + + L+ ++S+ + + R N + + T GTTL + Sbjct: 181 TIAAGTVINQDVTGAQNAQQTLIDQLSKYMDVKVEARANGGVTLRTGTGTTLVGEGNATL 240 Query: 236 NFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 +++ + T+ + I I + V G+I+ L+++RD P +L E+ Sbjct: 241 SYKAAGTVDATTAFSDIMITEPNGTRWPLLDGVSSGEIRGLVELRDIDAPAAAARLGELT 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + L + + L N L +T + Sbjct: 301 AKMADELNRAHNANSAVPAPTSLTGRNTGQSLTNALTGFTGKTTITTVNSAGVIQGSAEI 360 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 N L + Sbjct: 361 VFSGATMTVNGVAADPTTFLATVNAQLGGTATV 393 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 60/439 (13%), Positives = 112/439 (25%), Gaps = 12/439 (2%) Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V+ R + A + + ++ S T Sbjct: 272 GVSSGEIRGLVELRDIDAPAAAARLGELTAKMADELNRAHNANSAVPAPTSLTGR--NTG 329 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 SL + + TV ++A + + + ++ + L Sbjct: 330 QSLTNALTGFTGKTTITTV-NSAGVIQGSAEIVFSGATMTVNGVAADPTTFLATVNAQLG 388 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 V + D G S N+ + T Sbjct: 389 GTATVGFFNGQLRIEGQAGNGIAIADDATTPSSKGGRGFSHWFGLNDLVSTKTPTFYETG 448 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ F+ S T S V + G++ L + D V + + Sbjct: 449 LSLTSQHGFDAGESLTFRIGSESGARLRDVTVAVPAGTGTMGEL--LSALNDPVAGVGRF 506 Query: 289 QLDEMARVLIGSFSEKDPIAG------NSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + SF D A + ++ + V Sbjct: 507 GAFSLNASGALSFKAYDASATTMSVVKDGTTQDPSGVSMSQLFGLGGTGATRAGAYSVRS 566 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNVTLL 401 + +P+ L D+ KN F G TL Sbjct: 567 DIQQDPAKLALAQLNLSAAAGTPALSKNDGRGGLLLADAGKKNVNFASAGGNSGGTKTLS 626 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 YA + G + S + + + ++ GVN+ EEL + +Q+YN S Sbjct: 627 SYAADFAGDIGGKASAAKTRSETATALSQEADSRRASAEGVNMDEELVNMTTFQQAYNAS 686 Query: 462 NKLIMFTDKMLQTLLEGVK 480 +LI + M TL+ +K Sbjct: 687 ARLIQASKDMYDTLIGMLK 705 >gi|90422997|ref|YP_531367.1| flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] gi|90105011|gb|ABD87048.1| Flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] Length = 626 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 70/427 (16%), Positives = 136/427 (31%), Gaps = 19/427 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 MSL + A + N+ NA+ Y+R+ V + Sbjct: 1 MSLGDALSIAMAGLRANQAAMTLVSSNVANAETPGYIRKSVDQVTTNTGSMGSGVNINGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 E + L +S G L F + + + + + + L ++++ Sbjct: 61 NRELDSFVQTQLRTETSGAGYASLKSDFLQQLQGLYGNPDSSGTLEDAFNALTTAVQALG 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + VI+ A+ + N + +Q +R A+ I+ +SN + ++ +N+ Sbjct: 121 TSPDSQSARIGVINAAQTIAGQLNAMSNGIQTLRGAAETGIKDAVSNANTLMKQIADINN 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ LDQRD + ++S+++ I N + V+T G L Sbjct: 181 KLQTNPLGGTSTDSSTAALLDQRDRYITQLSQLMDIRVTTNGANQVTVFTGAGVQLVGNE 240 Query: 232 PRDINFEKMNSYTVTSESNP----------IFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++F + T + N S N S++ G+I A +++RD Sbjct: 241 AATLSFNAQGTVTPATTWNADASKSSLGSVTVSYSNGGSINLTSSIKSGEIAAYIEVRDK 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ QNQLD+ A L S S+K P I + T+ Sbjct: 301 IMVEAQNQLDQFAATLSSSLSDKTTPGTVITPAPAPQAGINIDTSGMMSGNVMHVTVTDA 360 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + S L N ++ A +N+ Sbjct: 361 ITGTQRNVSIMRVDDPSVLPLSNAATNDPNDLVVGIDFSHPATVIAQLNAALNPSNLYFT 420 Query: 402 EYARNSI 408 A + Sbjct: 421 GSATSIN 427 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 52/442 (11%), Positives = 122/442 (27%), Gaps = 18/442 (4%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + S + D+ + + + ++ + + L + Sbjct: 188 GGTSTDSSTAALLDQRDRYITQLSQLMDIRVTTNGANQVTVFTGAGVQLVGNEAATLSFN 247 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + V N + + + +E+ + + Sbjct: 248 AQGTVTPATTWNADASKSSLGSVTVSYSNGGSINLTSSIKSGEIAAYIEVRDK----IMV 303 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 N +F D V+ + GI+ V T Sbjct: 304 EAQNQLDQFAATLSSSLSDKTTPGTVITPAPAPQAGINIDTSGMMSGNVMHVTVTDAITG 363 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 R+++ +++ +V SN D + + P I L + F Sbjct: 364 TQRNVSIMRVDDPSVLPLSNAATNDPNDLVVGIDFSHPATVIAQLNAALNPSNLYFTGSA 423 Query: 291 DEMA--------RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + V S + + P + + + I Sbjct: 424 TSINVLNNAGFSTVTAASVTTTQAPTNLTSGSPEVALFTDNGAAYSGSISVSGNQITGLA 483 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----- 397 Q S + L S + +G + K+ + Sbjct: 484 QRLSVNNGLVADPSRLVVYNTTPLTASGDSTRADFITKQLTKSTYSYSPQTGVGSSSAPY 543 Query: 398 -VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 TLL Y + + + VV N + + +S+ GVN+ EE++ L+ ++ Sbjct: 544 KGTLLSYMQQFTAQQGAAAQTAAQVSDGQTVVLNTLQKKFSDVSGVNMDEEMAHLLSLQN 603 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 +Y+ + +++ ++M QTL++ Sbjct: 604 AYSANARVMSTVNQMYQTLMQA 625 >gi|294675564|ref|YP_003576179.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] gi|294474384|gb|ADE83772.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 54/493 (10%), Positives = 128/493 (25%), Gaps = 54/493 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53 MS+ + N + + A+I NI N+ Y R + Sbjct: 1 MSISSSLNAGVAGLAANATRLATISDNIANSGTYGYKRATADFESMVLTQARSSGTYSAG 60 Query: 54 TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP--THYISKLRD 109 R+ + + D+ L S+A+ + F + + + + P Sbjct: 61 GVRASSGRLIDQRGSLIGTSNAMDIAISGRGFLPVANTSALANGLGDQPLTMTSTGSFHT 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + S +L + N + +Q + +A++ + + ++ Sbjct: 121 DKDGVLRTDSGLVLLGWAALADGTIPVNARDTVTGLQPVVINANQTAGDPTTVMNWGINL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLF 228 F + + ++S I + N + D T Sbjct: 181 PASETADTAGGETLTSSIEYFGNLGNSNTLQVSFTPTIPAAGDPDSNQWTMTIRDSATTT 240 Query: 229 ETVPRDINFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + N + V +G + ++ Q Sbjct: 241 DPYGLGVGVVGQYTLDFDNTGTNGGTLSNVTTIQGPAWDSTEGTLNFTDASGFALADGLQ 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + + Q S+ Sbjct: 301 DITITIGK---------------------------------------QGDTNGLTQLASD 321 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + S + + Y F + P+ ++ L Sbjct: 322 FAPTSINKDGSPVGNLTSVEIDENGFIKATYDTGFIRTVYQVPLVDVSNINGLTALDNQ- 380 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + S S L + V++ +EL+ LI+ +++Y+ + K+I Sbjct: 381 -TFQVSSTSGSFYLWDAGDGPTGAVEGYAREGSAVDVAQELTNLIQTQRAYSSNAKVIQT 439 Query: 468 TDKMLQTLLEGVK 480 D+MLQ + Sbjct: 440 VDEMLQETTNIKR 452 >gi|206889889|ref|YP_002248123.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741827|gb|ACI20884.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] Length = 434 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 48/482 (9%), Positives = 103/482 (21%), Gaps = 52/482 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSE 58 +L + N + I NI NA+ + + + + + Sbjct: 1 MLTSLFTGISGLNANGLALSVIGDNIANANTVGFKASRANFADILSQTLGGASAMQVGRG 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + L + L + + R + + Y + Sbjct: 61 TMIIDIQKLFTQGTLETTSNPLDLAIEGDGFFVVQQPNGPTYYTRAGQFRVNKDGYIVDP 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + +L +D V A I +++ Sbjct: 121 NGYLLQAYQMDVNGNVTGAIGNVYLAGLMSDPSATDLITTQVNL---------------- 164 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + T Sbjct: 165 ------------------------------DSREDTTTWSFTSGSTLPVAGTYNYSTAIT 194 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +S F + D Q Sbjct: 195 IYDSQGNPHLVYTYFCKTAANTWEAHVVYNNSATGTNYVEVDFDSGTTQPVTIAFDSNGA 254 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 S + A Q + + + QY S+ + + + Sbjct: 255 LSDVYVTTPHTPPDPTFRPTAALDFSSWGVTSPQNVDIDLNNSTQYGSSNAVVFQNQNGY 314 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + K +A L + N +LE S Sbjct: 315 SAGNLIAVTVDQDGVISGVFTNGQVKKVAQVVLAKFVAAHNLTKVGNNL--YLESYASGG 372 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V + + V+L EE +I +++Y + ++I TD ML L+ Sbjct: 373 PTYGAPGTVGVGKVYANSLEASNVDLAEEFIRMIAAQRAYQANVRVITTTDNMLNELMNI 432 Query: 479 VK 480 V+ Sbjct: 433 VR 434 >gi|149927804|ref|ZP_01916055.1| Flagellar hook-associated protein [Limnobacter sp. MED105] gi|149823426|gb|EDM82657.1| Flagellar hook-associated protein [Limnobacter sp. MED105] Length = 576 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 128/343 (37%), Gaps = 19/343 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS +V+ A + N A ++ NI N++ + R+ + + V Sbjct: 1 MS-NSVYGIALSGLNAARAGLSTTSHNIANSNTVGFNRQQVIQQSRPSTGSDIGYIGQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + + + +S A + M ADD + +S + Sbjct: 60 DIASVQRVYSDFINSQEQKATSDAAFYNAKAQQIARVDAMIADDAS--GLSSALSIFFGA 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ S N ++ + + +AE + FN + ++R+ + ++ + L S++ Sbjct: 118 AQTLSTNPADLAARQNYLSSAETLSSRFNGLNTVMDELRSATNLKVRDTVEQLNNATSQI 177 Query: 171 TVVNDAIKFK---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N+ I T++ +D +D+RD L+ ++SE + + + + ++ ++G +L Sbjct: 178 AALNNQIVTALNQTSNGGPPNDLMDRRDKLILELSEQVQTTRVDMADGSTNLFLANGQSL 237 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVS---SNQGSAVPKGKIKALLQIRDSVVP 284 + +++ + + + + ++ G + L R+ + Sbjct: 238 VIGTTQFKVQTQVDPQDPQNLLVGMTTNVNGQDRLLAFDSGSLGNGALAGFLSFREEELT 297 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +QN + +A + + ++ + +N P + Sbjct: 298 EYQNTIGLLAARIGQTVNDIQTAGVDLDNNPASALFSFGSSGS 340 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 47/416 (11%), Positives = 124/416 (29%), Gaps = 7/416 (1%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +++ +A S + + + + I +L + +++ ++++ Sbjct: 167 VEQLNNATSQIAALNNQIVTALNQTSNGGPPNDLMDRRDKLILELSEQVQTTRVDMAD-G 225 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + N + +V + Q D + +N+ L + ++ Sbjct: 226 STNLFLANGQSLVIGTTQFKVQTQVDPQDPQNLLVGMTTNVNGQDRLLAFDSGSLGNGAL 285 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + FL R+ L + IG+ + T+ +F S Sbjct: 286 AG-----FLSFREEELTEYQNTIGLLAARIGQTVNDIQTAGVDLDNNPASALFSFGSSGS 340 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + ++ V+ Q + K + + Q + E+ + Sbjct: 341 FVDDISRVVPNVNNSTVNPTQVTLRGLDLSKLGPAEYEVQIVGSQPRYREVGSDGPFVPA 400 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + A N + + P + + R + Sbjct: 401 SLVTDPSGDYYEFAILQAHLCSFSLNNATPQEGDRFVLMPVREAALNM-RTAIDRPSEVA 459 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + N + +N + + V++ + + + + + Sbjct: 460 ASSAVNPSIGNNENILAVAALQNSRTLFQSNNSAGVSISDGFNQLVSRVGNKTREFNLAA 519 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V N +++S GVN+ EE + LIK +Q+Y S ++I + ++ +L Sbjct: 520 ESRETVLNQVADSRDALQGVNMDEEAANLIKFQQAYQASGRVISLSKELFDQILSM 575 >gi|16125152|ref|NP_419716.1| flagellar hook-associated protein FlaN [Caulobacter crescentus CB15] gi|221233880|ref|YP_002516316.1| flagellar hook-associated protein FlaN [Caulobacter crescentus NA1000] gi|13422164|gb|AAK22884.1| flagellar hook-associated protein FlaN, putative [Caulobacter crescentus CB15] gi|220963052|gb|ACL94408.1| flagellar hook-associated protein FlaN [Caulobacter crescentus NA1000] Length = 703 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 131/432 (30%), Gaps = 15/432 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A+ + A + A NI N + YVR+ + V + Sbjct: 1 MSLNAIMSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLSNGMGVGVNIDAI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S G+ ++ S + + D S + + + S Sbjct: 61 KRATDQFLQSASLNAASESGRASIVASTLNSAQQLFGDPSGETSFFTVLDDVYAAFSSAQ 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S +L + ++ + + + K+ DAD I ++ + LS++ +N Sbjct: 121 DDPSSSLLRTQALTRLDDFLSGSSRITASLSKLGKDADTRIAADVGRVNDLLSQIDALNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + DA + + L+ ++S+++ + R +VV +++G L + Sbjct: 181 DITRAKVAGADATGAENVQSSLVDELSKLMNVQISPRTLGGIVVRSTEGLNLAGDGAAKV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + T V N G+I+ L+ +R+ + +QL E Sbjct: 241 TYQTSATATGFLTVQLANGSDYPVPLNI----SSGEIRGLMDVRNIDLVNLSDQLGEFTS 296 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + S + LD + ++ R Sbjct: 297 RATEEINR--AANAASSVPAPTSLTGRNTGLDAQAALTGFTGKTTIALTNASGVIQRRID 354 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 V AG ++ N AG + + N +G L Sbjct: 355 IDFDAGTMTVNGAAGPAFTPANFLAQLNTALGGQGAAGFSNGA----LSINGVGGLGVAI 410 Query: 416 SDSHDLHMKSQV 427 +D Sbjct: 411 ADDATTPSSKTG 422 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 51/441 (11%), Positives = 124/441 (28%), Gaps = 17/441 (3%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 P N++ R +++ ++ S T Sbjct: 264 VPLNISSGEIRGLMDVRNIDLVNLSDQLGEFTSRATEEINRAANAASSVPAPTSLTGR-- 321 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 L++ + + NA V+Q + + + + Sbjct: 322 --NTGLDAQAALTGFTGKTTIALTNASGVIQRRIDIDFDAGTMT--VNGAAGPAFTPANF 377 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 T + ++ + + + V + + T ++ + T Sbjct: 378 LAQLNTALGGQGAAGFSNGALSINGVGGLGVAIADDATTPSSKTGKGFSHYFGLNDIVRT 437 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIF-IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + + ++ +T + + ++G + + G ++ ++ +S Sbjct: 438 SGYSPYETGLTSADLHGFTTGQMTIRLTDVEGGRIRDIPFTPPLGGTMQNMIDALNSRAS 497 Query: 285 --------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + +A ++E G A + + E Sbjct: 498 GVGLYGQFSMNAKGQVSFTSNTNTPVTMSIVADSTERGAGGPSASQLFGIGPAERSTRGE 557 Query: 337 TICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 +N NP L +++ N G ++ F Sbjct: 558 KFFLNTAMDQNPKLLPFAKLDLTQAVGGNAALAIGDGRGALALANAGESTATFGVAGSAA 617 Query: 396 T-NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + +T+ YA + G + + + + + V + + + GVNL EEL L Sbjct: 618 SVTMTVARYAADFGGSIARKAATAESRKEAAAAVSSEVDSQRQSEEGVNLDEELINLTTY 677 Query: 455 EQSYNISNKLIMFTDKMLQTL 475 +Q++N S +LI T M L Sbjct: 678 QQAFNASARLIQATKDMFDVL 698 >gi|254230134|ref|ZP_04923529.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|151937327|gb|EDN56190.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 660 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 55/448 (12%), Positives = 139/448 (31%), Gaps = 20/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 17 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 76 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S+ + Q + M + +++ D++++ Sbjct: 77 NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 135 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ V Sbjct: 136 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDV 195 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 196 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 252 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + S GKI ALL++RD +P Q+++ Sbjct: 253 ASQL-KMIDGYPDVHQRRLAMVEGDGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 310 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A ++ + G + + + + + Sbjct: 311 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIDDIS 369 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + + +++ + G+ + A + Sbjct: 370 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAGERVLLRP 429 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + I+ Sbjct: 430 TRSGAAIIKMETNDA--KAIAAQSYEAS 455 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 43/364 (11%), Positives = 113/364 (31%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174 + D + F+ ++Q D + +I ++ +++ L V Sbjct: 303 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 362 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I +A K + D + +S + ++ V + E + Sbjct: 363 VYIDDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAG 422 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + + Sbjct: 423 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 481 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + + + + ++ + + L +G Sbjct: 482 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 541 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 542 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 595 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 596 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 655 Query: 475 LLEG 478 +L+ Sbjct: 656 ILQL 659 >gi|254785378|ref|YP_003072807.1| flagellar hook-associated protein FlgK [Teredinibacter turnerae T7901] gi|237685158|gb|ACR12422.1| flagellar hook-associated protein FlgK [Teredinibacter turnerae T7901] Length = 1060 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 119/370 (32%), Gaps = 16/370 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + A ++ NI NA + Y R+ + + Sbjct: 2 TSNLLGISITGLRAAQASLSTTGHNISNAGVEGYSRQRVNIETNPATFNGSHYIGSGANI 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + L S+ + + + + AD + +++ Sbjct: 62 QEIERFANDFVSEQLRQDSALAADMNIYYDYVRQLDNLLADT--STGLASGFESFFAAMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ +E + FNT Q I + D+ ++ ++ + ++ + Sbjct: 120 NGQDDPTSIPARQLILSESENLADRFNTLYDRFQTIENNVDEALKAAVAQVNALVANIAE 179 Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 N I TA + +D LD+RD L++++E++ I T N + V G L Sbjct: 180 FNLNIADATAIGNGAPPNDLLDKRDEALRQLAELVPIQTYEEGLNQINVVFGSGQNLVVG 239 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S V G+I LL+ RD + N+ Sbjct: 240 AKARELTLQPG--DDNYARLDAVFKSEQGSEVVTDLVQGGEIGGLLRFRDETLQNVFNEF 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A V+ SF++ EN G + + D + I + P R Sbjct: 298 GRIALVMADSFNQAHKQGLTLENNFGENFFNDVNDPQIAARRVIGNSNNAMPNDRQMRLN 357 Query: 351 LRDGGSVSKK 360 + D ++ Sbjct: 358 IADSSQLTTS 367 Score = 87.4 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 44/437 (10%), Positives = 111/437 (25%), Gaps = 3/437 (0%) Query: 41 TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V ++N ++ ++ HA I Q + + A N Sbjct: 625 AELNSQLQGSGVTAYLADNGSLAFRLDHAGYGDITLQNYASDPDGNGDNAPAGQASNLLG 684 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + ++ N + T AE + + + Sbjct: 685 FNIEGATFTTVGGI--NGASGTGFMTNGYPAEAITITTAAEMAGGTPLTQSLFTHQNGSV 742 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 L L+ + V+ + L S+++ T N + Sbjct: 743 KELASALNNIAGVSANAFNYMEISNLKLTQAAPL-QLNINGSDLVEYETDPSGNPVLADA 801 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 D T + I +++ ++ V + L Sbjct: 802 VPDPQTDSDAFNSYIADRINADPQLSAAGIYAQAAIDPITGQAELRVHSSEGDDLQFTLT 861 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + D + + + + L + + Sbjct: 862 AAAGESVDISDGDNPNIALTSAGNGIGTAMTVGGRLDVTLAEGMSLGTFPPESMIFGDTR 921 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + L D + ++ + + +L Sbjct: 922 VADFAKSAYVGIQAELAGIPDTGDTFTLDFNWDAASDSRNAMDLVNLATGKLVGGGVASL 981 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 E + + + + + ++ V + ++ + GVNL EE + LI+ EQ Y+ Sbjct: 982 SESYGALVESVGIDAAAAKINAEAAEQVLSQTTQMRDSLSGVNLDEEAANLIRFEQLYSA 1041 Query: 461 SNKLIMFTDKMLQTLLE 477 + ++I + L+ Sbjct: 1042 NTQVISVARDLFDRLIN 1058 >gi|119385423|ref|YP_916479.1| hypothetical protein Pden_2696 [Paracoccus denitrificans PD1222] gi|119375190|gb|ABL70783.1| protein of unknown function DUF1078 domain protein [Paracoccus denitrificans PD1222] Length = 446 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 58/492 (11%), Positives = 119/492 (24%), Gaps = 58/492 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV 53 MS+ + + + S + A+I NI N+ Y R DT T Sbjct: 1 MSISSALSAGVSGLAANSTRLATISDNIANSGTYGYKRVDTSFESMVINQGRGGGLYTAN 60 Query: 54 TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS---PTHYISKLR 108 R+ + D+ L S + + + S D S R Sbjct: 61 GVRAATSRIVDERGNLVPTSHPLDIAISGRGMLPVIYSASLDSGTATSSDLVMTRTGSFR 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + Y + S +L ++ + S +Q I + + + Sbjct: 121 TDDQGYLRTDSGLVLMGWPANSDGTIPSQPRDSTTGLQPIMISPSQTAADPTTRIN---- 176 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + + A + + ++ R + Sbjct: 177 ----LRVNLPAGEAVGGATGTEREMEVEYFGNLGNSERMTVTFRPDITGAAGAQTNRWTM 232 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 E I + + + G+ S G + + Sbjct: 233 EIRDSAIINDPATPADES-------LIGIYTLEFDNSQAGGGTLANVTTAAGGAYSAATG 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + + G Q ++ Sbjct: 286 LL-----------------------------TVPGANGPMTINLGRYGDNQGITQLSASF 316 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + S + L Y F + P+ + L+ Sbjct: 317 SPTNVSKNGSPVGNLTALEIDENGYLQATYDTGFTRTLYQVPLVDVPNPNGLIAMDNQ-- 374 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + RS + L ++ ++ EL+ LI+ +++Y + K+I Sbjct: 375 TYKISPRSGAFYLWNAGDGPTGAVAGYAREASTTDVAAELTDLIQTQRAYTSNAKVIQTV 434 Query: 469 DKMLQTLLEGVK 480 D+MLQ + Sbjct: 435 DEMLQETANLKR 446 >gi|304310787|ref|YP_003810385.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] gi|301796520|emb|CBL44728.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] Length = 447 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 116/483 (24%), Gaps = 48/483 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55 FN A + A NI N + + + Sbjct: 2 SFNIAISGLKAAQSDLEVTSNNIANVATTGFKKSRAEFGDIYATGAFGSTKTAIGSGVLL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ ++ ++ + + + F + + + + + + Sbjct: 62 QAVSQQFNQGNMNFTQNTLDFGVSGEGFFVMSPNIGSSE----RIYTRAGAFGVNADGNV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S+ +L ++ V I L++ + +V Sbjct: 118 VNSSDQLLQVFPVNEDGTVTS-------------TALSSTIPLKLPDAAGTPKATELVTM 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D RD S + + + + +Y Sbjct: 165 GVNLPADAAALDPALFDPRDAKTYTASTSVNVYDSLGKAHVAALYY-------------- 210 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 S + IDG V+ + G A + + + + Sbjct: 211 -VRDSTSVVPNTWQMFTMIDGERVALDDGGTPAAPLNSARFSFGNDGTLNIGSMVPATFQ 269 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L GN+ P G + + L + Q+ S + Sbjct: 270 TLGLGVD----AGGNAAVPPAPGPLTGWLNGPDPLQVIEFDITAGTKQFASPFTLNTLTQ 325 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y + + +A L + W E + Sbjct: 326 DGFSIGRLTGIEVDDSGLVRAAYSNGQTVSVGKVALARFPNPQGLSQIGN--TSWKETSA 383 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I V+L EL LI ++++ + K I T+ + + Sbjct: 384 SGEALAGEAGTSSYGLIRAGALEVSNVDLTTELVGLITAQRNFQANAKSIETTNTVTNAI 443 Query: 476 LEG 478 + Sbjct: 444 INL 446 >gi|88704300|ref|ZP_01102014.1| flagellar hook-associated protein 1 FlgK [Congregibacter litoralis KT71] gi|88701351|gb|EAQ98456.1| flagellar hook-associated protein 1 FlgK [Congregibacter litoralis KT71] Length = 627 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 64/446 (14%), Positives = 145/446 (32%), Gaps = 26/446 (5%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVL 67 + ++ +NI N + + + R+ V + + Sbjct: 4 QRAISTTGQNIANVNTEGFSRQRVEFAALEPQLSGSGFVGSGVGIAAITRSYDQYLAGDV 63 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 +S+ L + + AD + + +++ + N + + Sbjct: 64 LDRTSSAAGASALGDLSGRVDDILADPA--TGLGPVLDEFFGAVQDVANNPGSLPERQVL 121 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT--ASKH 185 + AE + F + +A+ I+ + + F + + +ND I +T + Sbjct: 122 LGQAEVLADRFQYLNDRFAGLDQEANIRIDNSVREINAFAAGIADLNDRIVSETVRSGGQ 181 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 +D LD RD LL ++SE+IG++T+ + + + V +G L + + V Sbjct: 182 PPNDLLDARDQLLNRLSEVIGVTTVDQGDGAVNVLVGNGQALVVGSSVTELETFTDPFDV 241 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + I G+ V ++ G + G++ A+L R +V+ ++ L +A L +F+++ Sbjct: 242 TRVNVG--ISGLAVQTDIGRFLSGGELGAVLDFRGNVLDGARSDLGLIATGLTATFNDQQ 299 Query: 306 PIAGNSENVPGLFIADG-----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + G + + N ++ I + L G + Sbjct: 300 ALGLDLNGNFGGDFFRPLEPTISESISNTGTGAVTAVITDPTNLSGDEYQLSFDG-ANYT 358 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS----IGWLEKNRS 416 N + D + P AG + + + + I + Sbjct: 359 LTNTTTNASTTGPGPAFSIDGIDITVSGTPAAGDDFLIAPVAQGASLFDVAISDPRAFAA 418 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGV 442 S S + V Sbjct: 419 ASPLRSSTSLANAGSGQLNDLAVSDV 444 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 44/424 (10%), Positives = 111/424 (26%), Gaps = 17/424 (4%) Query: 72 SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + Q + + + + + + Sbjct: 204 TTVDQGDGAVNVLVGNGQALVVGSSVTELETFTDPFDVTRVNVGISGLAVQTDIGRFLSG 263 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 E+ + + R+D + + +N + Sbjct: 264 GELGAVLDFRGNVLDGARSDLGLIATGLTATFNDQQALGLDLNGNFGGDFFRPLEPTISE 323 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 + ++ +I T + + + + DG T + + Sbjct: 324 SISNTGTGAVTAVITDPTNLSGDEYQLSF--DGANYTLTNTTTNASTTGPGPAFSIDGID 381 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQI-----RDSVVPIFQNQLDEMARVLIGSFSEKDP 306 I + G + + P + +L + R +A G ++ Sbjct: 382 ITVSGTPAAGDDFLIAPVAQGASLFDVAISDPRAFAAASPLRSSTSLANAGSGQLNDLAV 441 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF----- 361 S + G + D G T +PS +G V+ Sbjct: 442 SDVASLPLAGNIVLTFNSDALGAGVPGFDVTGIAGGPIAYDPSTDANGLPVTLGDIEFTL 501 Query: 362 -----LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++A D ++ + + + + + + + Sbjct: 502 QGIPEDGDSFSIANNVDGSGDNRNALALAALQTERTLNGGTASYQDAYASLLADVAVSTR 561 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + ++ GVNL EE + LI+ +Q+Y + ++I D++ QTLL Sbjct: 562 QAKSAADTEGTLLEQARSALNSAQGVNLDEEAANLIRYQQAYQAAAQVIAVADEVFQTLL 621 Query: 477 EGVK 480 + Sbjct: 622 NATR 625 >gi|91225879|ref|ZP_01260848.1| flagellar hook-associated protein K [Vibrio alginolyticus 12G01] gi|91189529|gb|EAS75805.1| flagellar hook-associated protein K [Vibrio alginolyticus 12G01] Length = 646 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 119/333 (35%), Gaps = 17/333 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRLFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S+ + Q + M + +++ D++++ Sbjct: 63 NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ + Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + S GKI ALL++RD +P Q+++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGNGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 +A ++ + G + + Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNS 329 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/364 (11%), Positives = 115/364 (31%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174 + D + F+ ++Q D + +I ++ +++ L V Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I+ +A K + D + +S + +++ V + E + Sbjct: 349 VYIEDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDHSDSSFVLDGMKVQIGEGLAAG 408 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + + Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + + + + ++ + + L +G Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 528 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641 Query: 475 LLEG 478 +L+ Sbjct: 642 ILQL 645 >gi|88813660|ref|ZP_01128889.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231] gi|88789078|gb|EAR20216.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231] Length = 652 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 138/404 (34%), Gaps = 17/404 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + +F+ + + + + NI N + Y R+ T T V Sbjct: 1 MGDLFDNSISGLLAFQRAINTTAHNIANVNTAGYSRQRTELTARAPTEFGNGFVGNGVQA 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + S+ + L + + + AD T + D ++ Sbjct: 61 ASTNRLFNQTRQVAVQTSSAEYQRLETLAEYSGRIDSLLADQTA--GLTPALQSFFDGVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + S +T++ +E +V + ++ ++ D +++++ ++ + + + Sbjct: 119 ELANDPSSSPARQTLLSASENLVARLHFLDGQLAQLGTDIEQQLQAQVEQINGLANGIAE 178 Query: 173 VNDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I +A +D LDQRD L+ ++S ++ + + + + V+ +G TL Sbjct: 179 LNQTIVAMQASAGGQPPNDLLDQRDQLMLELSALVATEAVPQGDGSINVFVGNGQTLVSG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + T + N +++ G + LL R + +++L Sbjct: 239 FTANELQITPAHADGTIPEIGLARRNGAP-VNITASLQGGSLGGLLDFRRETLDPTRDRL 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NP 348 +A + + + ++ + + N P + I + T + +P Sbjct: 298 GLIASGIAEAANNQNRLGMHYANGPAGQLGGAIFQVAPPQVVPSQGTAGTAAAGLARLDP 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 S + D + + ++ N A N D ++ Sbjct: 358 SRVGDLTGANYRLSYDGSNWALSNLSSATTTPISNIPQDIDGLS 401 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 90/396 (22%), Gaps = 23/396 (5%) Query: 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136 Q L+ F A + ++ P +++ + + + +L LG + E + Sbjct: 233 QTLVSGFTANELQITPAHADGTIPEIGLARRNGAPVNITASLQGGSLGGLLDFRRETLDP 292 Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196 + I A+ + L + +L + + Sbjct: 293 TRDRLGLIASGIAEAANNQNRLGMHYANGPAGQLGGAIFQVAPPQVVPSQGTAGTAAAGL 352 Query: 197 LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256 S + ++ N + Y L + S + Sbjct: 353 ARLDPSRVGDLT----GANYRLSYDGSNWALSNLSSATTTPISNIPQDIDGLSIDVSKIS 408 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 VS + P A + + + + Sbjct: 409 GAVSGDSFLIRPTRNGAAGIDLTITRASEIAAAAPVRVAQASDASGTPQNQGTGQIGEVQ 468 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA------- 369 + A + + ++ + D S ++ L Sbjct: 469 VSSAASLPLSSPFTLTFDAANNRFLVNGSTSTTVAYDPSQDSSGVTRSIPGLGGVQFTLS 528 Query: 370 ------------GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + + + + + + N + + Sbjct: 529 GNPADGDRFVVEGNSGALGDNHNLLQLGKLTESGLLEGGKTSFQQAYSNLVNEVGTATLR 588 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + Q V + + GVNL EE + L+K Sbjct: 589 ATTHRDAQQSVLDQAKAAREAVSGVNLDEEAANLLK 624 >gi|325274792|ref|ZP_08140821.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51] gi|324100073|gb|EGB97890.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51] Length = 680 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 57/404 (14%), Positives = 142/404 (35%), Gaps = 15/404 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ + + N + + NI NA Y R+ T+ T+ Sbjct: 1 MSSLISIGLSGLNASQAALSVTSNNIANAATSGYSRQQTLQAAGPSHNIGAGFLGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L +S Q + + AD + + ++ +++ Sbjct: 61 ADVRRIYSSYLDNQLQTATSLQADSATFQDQITSVDKLLAD--RDTGISSVLTAFFAAMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ A+ + FN + ++ + A + +++ + + + + Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLSQQNATINSQLDTMAGQVNKLTASIAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I +AS + + LD R +++++E++G++ R + + VY G +L Sbjct: 179 YNKQITAASASGNTPNSLLDARGEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + I+ SS+ S + G I LL+ R V+ N+L Sbjct: 238 ANTLSVEPGV--ADKSQVGLRINYDSFSSDVTSVISGGAIGGLLRYRQDVLTPSMNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ S + + ++ G + I + ++ + + + Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAD 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 G + + + Y + D + + DP I+ Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNADPAPVIDG 399 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 68/256 (26%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ + N + + + G AL+Q Sbjct: 425 GSITTTLTDANKLAFAGPISANAGSGNSGTGTITQPTLGEALDIYGGADTALIQQSIRDS 484 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + D + G + + L + + + Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGQDNKLSIAVPMLDGSGNPILDGSGN 544 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 R+ GGS + + + A + G + Sbjct: 545 PRTFSVETTIGGSPAANDSFTLSFNADGKADNRNATALLELQTKSTVNTGSGGGTSFTSA 604 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ V SES S GVNL +E + L+K + Y S++ Sbjct: 605 YASLVERVGAKANQASIDTTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664 Query: 464 LIMFTDKMLQTLLEGV 479 +I + TL+ + Sbjct: 665 IIKAAQETFSTLINAL 680 >gi|5361014|gb|AAD42921.1|U12817_15 polar flagellar hook associated protein type 1 [Vibrio parahaemolyticus] Length = 658 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 52/448 (11%), Positives = 137/448 (30%), Gaps = 20/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 15 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 74 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S++ + Q + M + +++ D++++ Sbjct: 75 NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 133 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ + Sbjct: 134 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 193 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 194 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 250 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + + + GKI ALL +RD +P +++ Sbjct: 251 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 308 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A ++ + G + + + + + Sbjct: 309 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNS-KADVAVYVDDIS 367 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + +++ + G+ + A + Sbjct: 368 ALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAGERVLLRP 427 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + I+ Sbjct: 428 TRSGAAIIKMETKDA--KSIAAQSYEAS 453 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/364 (11%), Positives = 111/364 (30%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-----------SNLRRFLSELTVVN 174 ++D + F+ ++Q D + +I ++ S + + V Sbjct: 301 QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 360 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + +A K + D + + + ++ V + E + Sbjct: 361 VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAG 420 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + Sbjct: 421 ERVLLRPTRSGAAIIKMETKDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 479 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + D + + ++ + + L +G Sbjct: 480 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVPKSHPLYKNGDATIFELTEG 539 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 540 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 593 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 594 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 653 Query: 475 LLEG 478 +L+ Sbjct: 654 ILQL 657 >gi|242277989|ref|YP_002990118.1| hypothetical protein Desal_0512 [Desulfovibrio salexigens DSM 2638] gi|242120883|gb|ACS78579.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 529 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 51/536 (9%), Positives = 115/536 (21%), Gaps = 63/536 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51 M L + SQ + I N+ N + + T S + Sbjct: 1 MGLKGSMYNGISGIRAHSQAMSIIGNNLANGNTIGFKGARTSFEDSFYSAVNTGGGIGQV 60 Query: 52 --VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V S + S A + F + + + Sbjct: 61 GHGVGIASIYGDFKQGPFEPSSEATNVAIGGKGFFTV-----RHPDTDGTYYTRAGNFIF 115 Query: 110 SLESYSKNLSEDILGKTVIDNA--------------------EEVVQNFNTSAREVQKIR 149 + + + ++ ++ + + A V Sbjct: 116 NKQGVLTDPHGYVVQGWKVNPNSESGKPDIIGTPTDIKLDRFQSPPVRTSEIAMNVNLSS 175 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-- 207 DK + N I + + D+ + Sbjct: 176 KAEDKCNVTGQPFFSLHQTWNGKNNPPIPADRYAFQNTIKTFDESGTSHDLTIYFDPVKD 235 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 ST+ + VY T R IN + + + + G + Sbjct: 236 STVTTDAAGNRVYEFIVTVPPGEDGRTINGTALKTTSAAGLLMTGTMTFNPRGEMIGMSS 295 Query: 268 ---PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 G + + + V + + + + N L Sbjct: 296 FSLKGGATGGMQNLNNWVPSPMSDDGKPIFTANFLGKANANLATDPDANPITLDFGLSNG 355 Query: 325 DLDNKLCQGISETIC--------------------VNPQYRSNPSFLRDGGSVSKKFLWN 364 + Y + + + Sbjct: 356 SNPPTWSTPTPADASAVGNTLANIPNFTTPKRSASYSTSYDTGNARNSQSQNGYGAGFLQ 415 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + Y + + +A N L N S Sbjct: 416 AVEVDRDGVVTGRYSNGQVLDLYVLTLANFNNQYGLRREGGNLFS--STRDSGPALTGRA 473 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ + V++ +E+ LI ++ + ++K I D++L L++ + Sbjct: 474 GTGPLGSIASNKLEQSNVDVGDEMVKLITTQRGFQANSKAITTADQLLGELIQLKR 529 >gi|254511352|ref|ZP_05123419.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] gi|221535063|gb|EEE38051.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 47/487 (9%), Positives = 123/487 (25%), Gaps = 63/487 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N + + A+I NI N+ Y R +T + + Sbjct: 9 MTISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTSGQGGSYSAGGV 68 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R+ ++ + D+ L +++ + ++ N R + E Sbjct: 69 RTTSQRLIDQRGSLVTTNNSTDLAVRGRGMLPVRPSSQIAAGSNEMMLTTTGSFRTNEEG 128 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y S +L + + ++ I+ ++ + + ++ Sbjct: 129 YLVTQSGLVLLGWRAAADGSIPSVPRDTPAALEPIQLSVNQLSGAPTTEMNLRMNLPATA 188 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 D ++ + + V T+ Sbjct: 189 --------------------TDAGAPGDAQPLSVEYFDNLGKSESVDIELVPTVP----- 223 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + T+ ++ + G + S G + ++ + + Sbjct: 224 AVGSSNEWTMTLRDSASGGTVIGEYTLTFTDSRTAGGTLASVTAVTGGAYDPATGSMVVN 283 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + A D Sbjct: 284 VAGGPMEINIGQLGDADGITQLSDTFAPVSITRDGS------------------------ 319 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + Y ++ P+A + L +S + Sbjct: 320 -----AVGTMTSVQVDENGYVYAFYDTGVSRRMFQIPLADVPNPNGLTAL--DSQTYAPS 372 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + L + + ++ EL+ +I+ +++Y+ S K+I D+MLQ Sbjct: 373 RDSGTFFLWNAGEGPTGDLVSFAREESTTDVATELTSMIQTQRAYSSSAKVIQTVDEMLQ 432 Query: 474 TLLEGVK 480 + Sbjct: 433 ETTNIKR 439 >gi|311105941|ref|YP_003978794.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans A8] gi|310760630|gb|ADP16079.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans A8] Length = 555 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 66/406 (16%), Positives = 133/406 (32%), Gaps = 18/406 (4%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSEN 59 A N A A+ NI NA Y R+ M + + V V T Sbjct: 7 ALGGLNAAQAGLATTSHNINNATTVGYNRQRVMVSTAGAQATSNGYIGRGVQVDTVERSY 66 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + K L + Q + + + + AD ++ S+ + + + Sbjct: 67 DSFLYKQLVGAQGSGAQLQTQYNQVSAINNLFAD--RTVGIAPGLTNFFTSMNAVASKPA 124 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + ++ A + ++ E+Q R + +I + + +L+ + +N I Sbjct: 125 DPAARQDLLGKANSLATQIRSAYTEMQNQRIGLNTQITTTVEQVNSYLTRIDDLNQQISL 184 Query: 180 KT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T A +D LDQRD + ++++++G++T + + + S G L Sbjct: 185 ATGKAGGSPPNDLLDQRDQAVMELNQLVGVTTYEQGDKINITLASGGQALLSGNTIYPLQ 244 Query: 238 EKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +S V + + + + V G + LLQ R + + + Q+QL +M Sbjct: 245 AVASSKDVGRTTIAYTLPAGAGKTVAVELNDTEVTGGSLGGLLQFRATSLDVMQSQLGQM 304 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A L SF+ + + PG Q S N ++ Sbjct: 305 AVGLALSFNAQHKQGLDQNGNPGTDFFGIGSPQGVPNAQNKSNASISGQFTNLNNINAKE 364 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + V + + N D G+ ++ Sbjct: 365 YEISFDGTNYRVLRMPEGSQVYNGPATGTPGTLNLDSEMGVTLTIS 410 >gi|89068728|ref|ZP_01156114.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89045691|gb|EAR51753.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 432 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 59/484 (12%), Positives = 125/484 (25%), Gaps = 56/484 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56 MS+L + + A+I NI NA+ + R T TT +P +++ V R Sbjct: 1 MSILGAMKTGVSGLQANAASVANISENIANANTDGFRRSFSQMVTTTTTNPSSMSGVIAR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + SA F + + N K Sbjct: 61 DRIDMGTPGSMRPTDSATDLALEGGGFFVVSQRPDEPLASNYML-TRAGSFTPDENGNLK 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + L D + TS ++ + + + ++ Sbjct: 120 NAAGFYLAGFPTDQNGQTGGIDRTSFGDLSTVNVLERSIQGAPTTTI--------ALSGN 171 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + + + + +T + + P Sbjct: 172 LPAQESGLATPGAPFISSAEYFNPLGGAERLELRWLPSMNKNEWTLEISGPDPNQPPYGW 231 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + +P+ G+ A +A L I + P Sbjct: 232 VTATFEDSGPNAGSPLTYQGMPNGGGANFAFNDATGQATLTIDNGNTPQVI--------- 282 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L G Q+ + + + Sbjct: 283 --------------------------------TLDLGAPGEFDGMTQFAGDYTPPQIDRD 310 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 S+ + + + + + PVA ++ L A N + S Sbjct: 311 GSEAGNLARVEIENDGTVFGFFDNGQRMSLFSLPVANVSNPEGL--VAGNGNAYKLSRAS 368 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + L + I V++ EEL+ LI +++Y+ + K++ D+ML Sbjct: 369 GAMTLGIAGGGGTASIYAGALEGSNVDIAEELTDLIATQRAYSTNAKVVTTADEMLDETT 428 Query: 477 EGVK 480 + Sbjct: 429 RIKR 432 >gi|28897559|ref|NP_797164.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus RIMD 2210633] gi|260364617|ref|ZP_05777219.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] gi|260878278|ref|ZP_05890633.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|260898108|ref|ZP_05906604.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|260901960|ref|ZP_05910355.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] gi|28805771|dbj|BAC59048.1| polar flagellar hook associated protein type 1 FlgK [Vibrio parahaemolyticus RIMD 2210633] gi|308086131|gb|EFO35826.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|308090129|gb|EFO39824.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|308106763|gb|EFO44303.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] gi|308115094|gb|EFO52634.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] gi|328473447|gb|EGF44295.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 10329] Length = 646 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 52/448 (11%), Positives = 138/448 (30%), Gaps = 20/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S++ + Q + M + +++ D++++ Sbjct: 63 NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ + Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + + + GKI ALL +RD +P +++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A ++ + G + + + + + Sbjct: 297 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNS-KADVAVYVDDIS 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + +++ + G+ + A + Sbjct: 356 ALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAGERVLLRP 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + I+ Sbjct: 416 TRSGAAIIKMETNDA--KSIAAQSYEAS 441 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/364 (11%), Positives = 111/364 (30%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-----------SNLRRFLSELTVVN 174 ++D + F+ ++Q D + +I ++ S + + V Sbjct: 289 QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 348 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + +A K + D + + + ++ V + E + Sbjct: 349 VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAG 408 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 467 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + D + + ++ + + L +G Sbjct: 468 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVPKSHPLYKNGDATIFELTEG 527 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 528 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 581 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 582 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641 Query: 475 LLEG 478 +L+ Sbjct: 642 ILQL 645 >gi|262394933|ref|YP_003286787.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|262338527|gb|ACY52322.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 646 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 55/448 (12%), Positives = 139/448 (31%), Gaps = 20/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S+ + Q + M + +++ D++++ Sbjct: 63 NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ V Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + S GKI ALL++RD +P Q+++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A ++ + G + + + + + Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIDDIS 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + + +++ + G+ + A + Sbjct: 356 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAGERVLLRP 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + I+ Sbjct: 416 TRSGAAIIKMETNDA--KAIAAQSYEAS 441 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/364 (11%), Positives = 113/364 (31%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174 + D + F+ ++Q D + +I ++ +++ L V Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I +A K + D + +S + ++ V + E + Sbjct: 349 VYIDDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAG 408 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + + Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + + + + ++ + + L +G Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 528 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641 Query: 475 LLEG 478 +L+ Sbjct: 642 ILQL 645 >gi|170722885|ref|YP_001750573.1| flagellar hook-associated protein FlgK [Pseudomonas putida W619] gi|169760888|gb|ACA74204.1| flagellar hook-associated protein FlgK [Pseudomonas putida W619] Length = 682 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 147/446 (32%), Gaps = 16/446 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N + + + + NI NAD Y R+ + T+ Sbjct: 1 MASLINIGMSGLSASQSGLHTTGNNIANADVAGYSRQQNIQRAKGSLQEGQLFMGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L +S + + + N T ++ +L+ Sbjct: 61 ADVRRVYNAFLDAQLQTATSLNSDST--AYLNQVTPLNNLLSDSNTGITGALTNFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S + +ED + ++ NA+ + FN+ + + ++ + + + + + S + Sbjct: 119 SAANKPTEDASRQLLLSNADALANRFNSLSAQFKEQNTNINGNLSSMTARINELTSSIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N+ I +A +D LDQR+ +++++E++G+ T+ R + ++ VY +G +L Sbjct: 179 YNEQISKVSAINGQPNDLLDQRNEAVRQLNELVGVQTVER-DGNIDVYLKNGQSLVLGKT 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + ++ I +D + + +++ G++ LL+ R + N+L Sbjct: 238 TNKMSAEPSATDP--TQFAIKLDRGSTTMDITNSITGGEMGGLLRYRSETLAPAMNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ + + + G + + D + + I N Sbjct: 296 IALVVSQQINSQLGQGIDKNGEFGAALFG-DINSDKAMSARSTAKIGNAGDAALNVVIRD 354 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G + + + D + ++ + Sbjct: 355 TGKLSTSDYQVTFVGPTADKFQVKKLPDGTDMGTYSTNDDPAPVIDGFSIDLKSGTAAVG 414 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438 + + + +++ Sbjct: 415 DSFKITPTRNASAEIDVVLTDAKRLA 440 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 41/132 (31%) Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + GS + V + G +++ + Sbjct: 551 SFEMDVAGSPKNGDSFTVSLTGAGSSDNRNALSLQELQTKQTMDIGSTKGISITDAYGKL 610 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + V+ + + + GV L EE S LIK +Q Y S+++I Sbjct: 611 VESVGAQAKQGQMDTQATGVILTQAAGARDSLSGVQLDEEASNLIKYQQYYTASSQIIKT 670 Query: 468 TDKMLQTLLEGV 479 + TL+ + Sbjct: 671 AQDIFNTLIAAL 682 >gi|153840135|ref|ZP_01992802.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] gi|149746243|gb|EDM57333.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] Length = 430 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 119/333 (35%), Gaps = 17/333 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S++ + Q + M + +++ D++++ Sbjct: 63 NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKA 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ + Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + + + GKI ALL +RD +P +++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 +A ++ + G + + Sbjct: 297 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNS 329 >gi|330502734|ref|YP_004379603.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] gi|328917020|gb|AEB57851.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] Length = 456 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 45/477 (9%), Positives = 108/477 (22%), Gaps = 27/477 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62 FN + A+ NI NA + + + + T + + Sbjct: 2 SFNIGLSGLRAATSDLNVTGNNIANAGTAGFKQSRAEFADLYASSMLGTGKNPQGSGVLL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + I + + + Y N Sbjct: 62 ADVAQLFNQGNINYTQNALDMAINGNGFFMTSNNGEMSYTRSGYFGTDRDGYIVN----- 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + +++D + +++ +N Sbjct: 117 ------NFGYRLQGYAADDSGNILPVQSDLRVSAGQQEPKATTTVTQRINLNSNAVRPAN 170 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRDINFEKMN 241 + A D D S I N + + + + + +N Sbjct: 171 AGTMAAPTFDPSDSKSFNWSTSTNIYDSQGNAHVMSQYFVKNEAPANNGWVMHVLIDGVN 230 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 +S + + A + LD A Sbjct: 231 PRDPSSTQPFSYAVNYDAAGQL----------ADPALTPLASTPPNPALDAPAIPTGTPN 280 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + G + + + + + QY ++ Sbjct: 281 GIFALAEADWVPAEKDPVNPGTMVANGADSEAFTFDMRGSTQYAASFGVNAVSQDGYTTG 340 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + Y + +K +A L + W++ S + Sbjct: 341 QLAGIEVDDTGIIFARYTNGQSKVQGQVLLANFANVQGLSPVGK--TAWVQSFESGEPVI 398 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V L ++L LI +++Y + K I + QT++ Sbjct: 399 GTPRSSTLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 455 >gi|88858137|ref|ZP_01132779.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2] gi|88819754|gb|EAR29567.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2] Length = 681 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 124/361 (34%), Gaps = 18/361 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + + A + + NI N + Y R+ + Sbjct: 1 MS-FGILGTGVSGLAAAQKGLDTTGHNIANVNTTGYNRQTVEQISTVGIPFGGVFLGNGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + S + + + A+ + T I + ++ Sbjct: 60 QVSSISRAFNEFSYTEVIYNKSQFNYNNTQTTNASRLDNFLANT--DTGITKSIEESFNA 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR-ADADKEIELEISNLRRFLSE 169 + +++ + + +AE + FN EV++ + ++EI+ ++ + + Sbjct: 118 INGITEDPTIISARNVFLSSAESTAKRFNNMFSEVEQQHLGNINQEIKTTVAAINEITAR 177 Query: 170 LTVVNDAIKFKTA---SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + +N I + + A+D LD+RD+L+ ++SE + ++ I + + + G T Sbjct: 178 IGQLNGEIAVANSVAENGFPANDLLDKRDLLVSQLSEKVQVNIIDLPDGTINLTVGTGLT 237 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIF-IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L + N + I G + + + G + L +IR+ ++ Sbjct: 238 LVAGTFAVPLSVERNEFDSNKLEVGIAPTPGAPNKAIVTNQLDGGSLGGLFKIREELLLP 297 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++A +F+ + + + G + I D L + ++ Sbjct: 298 AIRDMGKIAIAYADAFNRQQSLGRDLNGDEGTNLFKDINDPQVALTRTLNSKQNPTASDF 357 Query: 346 S 346 S Sbjct: 358 S 358 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 41/415 (9%), Positives = 119/415 (28%), Gaps = 14/415 (3%) Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 ++ + L F+ +E++ + + +S ++L+ D + Sbjct: 276 TNQLDGGSLGGLFKIREELLLPAIRDMGKIAIAYADAFNRQQSLGRDLNGD----EGTNL 331 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 +++ R + + + + I+N E + + + + Sbjct: 332 FKDINDPQVALTRTLNSKQNPTASDFSVNITNASLLTGE-----EYLMEVDQTGNLVVSD 386 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 D+ + ++I +S + ++ + + F +Y+ + E Sbjct: 387 KDKNVLATYTPADIAAMSPPTNDRLEIPDTGLNINIAKNNLAVGDRFLIRATYSGSREIE 446 Query: 251 PIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 D +V ++ V +++ + N + + Sbjct: 447 RTLEDPNLVAAAGNALDVSAPTNPNNVELSLYEITDTSNANFPNQANFPPPLDPQIRVVV 506 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 ++ L + L+ + ++ F + Sbjct: 507 DATGTQYSIQDSAGNPLAAPAGGPFNIPSDQVIDLPGMRLELKGQLAGNEVFNITNQGGT 566 Query: 370 GYPD----LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 D ++ + T E + ++ Sbjct: 567 APFDEKKFGPGDNSNALIMLEYQNKKTLDGGTNTFSESYAELVTFVGVKTQSGKINADSF 626 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ + + GVNL EE + LI+ +Q+Y+ + ++I ++ +LL+ V+ Sbjct: 627 AVLLAGAEQRMAAISGVNLDEEAANLIRYQQAYSAAARIISIANETFDSLLQAVR 681 >gi|78358192|ref|YP_389641.1| flagellar hook-associated protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220597|gb|ABB39946.1| Flagellar hook-associated protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 696 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 46/396 (11%), Positives = 125/396 (31%), Gaps = 16/396 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M+L ++ + ++ + + NI N + Y R+ V Sbjct: 1 MTLNSLLSVGKDALFASQSAIQTTGNNIANVNTPGYSRQAVRFEAKTPIDWKPGQMGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 ++ H H + + + E + ++ + +S+ Sbjct: 61 KAAEVFRYFNTFIEQEYHDHFATEQRWKAQHQMLQSVESLF-NESNSKGINAALSQFFTD 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + ++ + + ++ + + + N++A + ++ D+ I ++ + + ++ Sbjct: 120 WQQLAQRPDDKATREALLAHTQSLTSLINSTADSMNQLEHQMDEYIRQDVDKANKLIKDI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N +I+ ++A+ LDQR+ ++++++ I+ + I R + D VV T G TL + Sbjct: 180 AELNRSIQVHDIPGSNNANTLLDQRNQMVRELAAIMDVDVIDRGSGDFVVNTKAGHTLVD 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP----KGKIKALLQIRDSVVPI 285 + + + P F +V + G Sbjct: 240 GEESFELKFEGPKTSAVVKGVPPFDGEIVFEGSSAREYTLEIVSGGAVGGGATFKVSYDG 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + L + L F + ++ G DL I + Sbjct: 300 GRTWLTDETTGLPKEFQANAQTGKVHVDGLDIYFNAGANDLAAGDEFTIVPKSGLYWVRP 359 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + ++ + + G + D+ Sbjct: 360 TTEPLNITPMAFAEGGDNPRRLVGGTLAGYFSFRDA 395 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 93/308 (30%), Gaps = 6/308 (1%) Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + + ++ D ++++ + + YT G ++ + + Sbjct: 389 YFSFRDANLGKYQEKLDAFSRELAWQVNYLHSQGAGLGHLDYTRGGDSVNDPALALGDAS 448 Query: 239 KMNSYTVTSESNPIFIDGVVVSSN-----QGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 SY +S + + ++ A + N ++ Sbjct: 449 SGLSYFDKLKSGNLTMYFFDSATGELASGASFGPLDFGGGANFDPSVHTLDDVVNAINTS 508 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + + ++ + AD L L P L D Sbjct: 509 WGGYVTASIADNQLVLDAADGYQFGFADDSTGLLAALGINTYFQGDSAVTLGMRPEVLAD 568 Query: 354 GGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + G D K N +L EY + Sbjct: 569 VSRINAGRINGGGEANVGDNDTATAISGLATKKLDIPTSYEQGRNQSLSEYFNTISANVG 628 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + + +S + GVNL EE+S L+K + SY + KL+ D+ML Sbjct: 629 SDTAQAKFGSDFYGTLADDLSARQDSVAGVNLDEEMSSLVKFQHSYKAAAKLVTTADEML 688 Query: 473 QTLLEGVK 480 Q LL + Sbjct: 689 QVLLGLKQ 696 >gi|46578934|ref|YP_009742.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. Hildenborough] gi|46448346|gb|AAS95001.1| flagellar hook-associated protein FlgK, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311232792|gb|ADP85646.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris RCH1] Length = 698 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/381 (11%), Positives = 113/381 (29%), Gaps = 15/381 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS+ ++FN N N A + NI N + Y R++ + V Sbjct: 1 MSISSLFNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 S + E + ++ + ++ + Sbjct: 61 YAAEVIRHFNKFLFSSYLDKYSTQQRWEKQYEELQGVENLF-NEANTSGINAALTTFFND 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + SK + + + ++ +++ + + + + +++ + D++I ++ + L + Sbjct: 120 WQELSKRPDDKSVREALLAHSDNLTKLIRNADDTMLRMQQEIDQQIGQDVDAVNDMLRSI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N + ++A+ DQRD L++K++E + ++ + + V T G TL + Sbjct: 180 ADINRQLNIHDDPGRNNANTLYDQRDQLVRKLAEKLDVTVVDNGGGNYTVNTKAGQTLVD 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + F + + + S + + Sbjct: 240 GTVAYELRFDGPKSEAQLTTTSAFDGTLEFTGSDSSEYTLEVVTGGAVGTATYRVSLDGG 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +E S + D + + Sbjct: 300 QTWLKDA---DGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGDRFTITPKSGLYWVT 356 Query: 350 FLRDGGSVSKKFLWNVKNLAG 370 RD +V+ + L + + Sbjct: 357 PTRDPLNVTPQALSDGTDNTS 377 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/438 (11%), Positives = 118/438 (26%), Gaps = 25/438 (5%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V T R + A + + + + P Sbjct: 283 TGGAVGTATYRVSLDGGQTWLKDADGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGD 342 Query: 106 KLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + +S Y + D L T ++ + + + D +I L Sbjct: 343 RFTITPKSGLYWVTPTRDPLNVTPQALSDGTDNTSRITGGSLGALFTVRDDKIGEYRDKL 402 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 F + + + + + + + + ++ S Sbjct: 403 DAFAN--------------------TLMWEVNRIHSQGAGLEKLAQSAGTTKVPNTTASL 442 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ D + V ++ ++ + + VV Sbjct: 443 GSPTAGINFHDRLQDGNIGIYVYDKTTGAVVNSGSIDFSSVVPPGLANFSKDDHSLQDVV 502 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 N LI + + + + + L Sbjct: 503 DAINNDAK--FTGLITASIKDGKLVVDGVGDNVFSFGADSTGVLAALGLNTFFQGSGAAD 560 Query: 344 YRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 P ++ G ++ + +G + K + + N +L E Sbjct: 561 IALRPELRQNTGLINAGQVNGASEGNSGDNNSAKEIAALSTKKVTVSMFSSNSGNQSLSE 620 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + + + + + + Q + + I S+ GVNL EE++ L+K + SY + Sbjct: 621 FYSSIVAVVGADTASAKFNKAFHQAMSDDIDSRMSSVSGVNLDEEMASLVKFQHSYKAAA 680 Query: 463 KLIMFTDKMLQTLLEGVK 480 KL+ D+M Q LL + Sbjct: 681 KLVTTADEMFQVLLRLKQ 698 >gi|94986792|ref|YP_594725.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731041|emb|CAJ54404.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 502 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 54/506 (10%), Positives = 116/506 (22%), Gaps = 32/506 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54 ++ S ++ NI NA+ Y ++ + Sbjct: 1 MMGSLFIGATGMKTHSTGLGTVSNNIANANTIGYKQQQVVFQDLFSQDLAIGSTGSQGPN 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 Q + A + + + R + + + Sbjct: 61 QAGMGAQVGSVRTIFTQGAFEPGNSVTDLAIGGKGFFQVTLEDKVHYTRAGNFRFTQDGF 120 Query: 115 SKNLSEDILGKTVIDNAEEV--------------------VQNFNTSAREVQKIRADADK 154 + S L + I N + +T+ V + DK Sbjct: 121 LNDPSGFTLMGSRISNNPNIKKETLEPIQLDFNDPTVAKSPAKTSTALNAVVNLGDSTDK 180 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 S I S DQ+ G + + Sbjct: 181 TQSEANPYFALLESWKGNGTPPISTSNYSYAQPMRVYDQQGNSHDITVYFDGAPSSTGSK 240 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + + + T + + + + K Sbjct: 241 TFEYLVAMN--PSEDGSAASGTDSAGLLMSGTMTFSSNGELKNMTAFTPTGSATKDLNAW 298 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + +P F + P A G I Sbjct: 299 QPAPLVNGLPQFSANFVGAGIQPLTLDFGIKSQQNMWAGAPASAAAIGTDIGKLPSMMPI 358 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + S R + + L Y +S +F P+A Sbjct: 359 QTSSGNSTARNGSSSTRRYSQDGYPQGDLVDVTITSEGKLQGKYSNSQVVDFYNIPLARF 418 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + L N S + + + +S + T V++ E+ +I + Sbjct: 419 TSEDGLRREGNNHYS--ATLDSGGPEFGLPGTSNYGKLSVNQLETSNVDMSREMVNMIII 476 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + +++K + D MLQ LE + Sbjct: 477 QRGFQMNSKSVTTADTMLQKALELKR 502 >gi|111115108|ref|YP_709726.1| flagellar hook protein FlgE [Borrelia afzelii PKo] gi|216263795|ref|ZP_03435789.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] gi|110890382|gb|ABH01550.1| flagellar hook protein [Borrelia afzelii PKo] gi|215979839|gb|EEC20661.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] Length = 442 Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 46/490 (9%), Positives = 114/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 A + N Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGGNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R ++Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L + Q Sbjct: 219 LR------VVKDPNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPSQKGDVLQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + G + + D + Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGTVGSYTDSITQFADASSTK----------------- 315 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 316 --AIIQDGYGMGYMENYEIDQNGIIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|120603465|ref|YP_967865.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4] gi|120563694|gb|ABM29438.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4] Length = 698 Score = 139 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 43/381 (11%), Positives = 113/381 (29%), Gaps = 15/381 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS+ ++FN N N A + NI N + Y R++ + V Sbjct: 1 MSISSLFNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 S + E + ++ + ++ + Sbjct: 61 YAAEVIRHFNKFLFSSYLDKYSTQQRWEKQYEELQGVENLF-NEANTSGINAALTTFFND 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + SK + + + ++ +++ + + + + +++ + D++I ++ + L + Sbjct: 120 WQELSKRPDDKSVREALLAHSDNLTKLIRNADDTMLRMQQEIDQQIGQDVDAVNDMLRSI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N + ++A+ DQRD L++K++E + ++ + + V T G TL + Sbjct: 180 ADINRQLNIHDDPGRNNANTLYDQRDQLVRKLAEKLDVTVVDNGGGNYTVNTKAGQTLVD 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + F + + + S + + Sbjct: 240 GTVAYELRFDGPKSEAQLTTTSAFDGTLEFTGSDSSEYTLEVVTGGAVGTATYRVSLDGG 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +E S + D + + Sbjct: 300 QTWLKDA---DGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGDRFTITPKSGLYWVT 356 Query: 350 FLRDGGSVSKKFLWNVKNLAG 370 RD +V+ + L + + Sbjct: 357 PTRDPLNVTPQALSDGTDNTS 377 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 51/438 (11%), Positives = 118/438 (26%), Gaps = 25/438 (5%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V T R + A + + + + P Sbjct: 283 TGGAVGTATYRVSLDGGQTWLKDADGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGD 342 Query: 106 KLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + +S Y + D L T ++ + + + D +I L Sbjct: 343 RFTITPKSGLYWVTPTRDPLNVTPQALSDGTDNTSRITGGSLGALFTVRDDKIGEYRDKL 402 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 F + + + + + + + + ++ S Sbjct: 403 DAFAN--------------------TLMWEVNRIHSQGAGLEKLAQSAGTTKVPNTTASL 442 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ D + V ++ ++ + + VV Sbjct: 443 GSPTAGINFHDRLQDGNIGIYVYDKTTGAVVNSGSIDFSSVVPPGLANFSKDDHSLQDVV 502 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 N LI + + + + + L Sbjct: 503 DAINNDAK--FTGLITASIKDGKLVVDGVGDNVFSFGADSTGVLAALGLNTFFQGSGAAD 560 Query: 344 YRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 P ++ G ++ + +G + K + + N +L E Sbjct: 561 IALRPELRQNTGLINAGQVNGASEGNSGDNNSAKEIAALATKKVTVSMFSSNSGNQSLSE 620 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + + + + + + Q + + I S+ GVNL EE++ L+K + SY + Sbjct: 621 FYSSIVAVVGADTASAKFNKAFHQAMSDDIDSRMSSVSGVNLDEEMASLVKFQHSYKAAA 680 Query: 463 KLIMFTDKMLQTLLEGVK 480 KL+ D+M Q LL + Sbjct: 681 KLVTTADEMFQVLLGLKQ 698 >gi|85715030|ref|ZP_01046015.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A] gi|85698227|gb|EAQ36099.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A] Length = 620 Score = 139 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 61/411 (14%), Positives = 138/411 (33%), Gaps = 18/411 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 MSL + + A + + + N+ NA+ YV + + + V ++ Sbjct: 1 MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQIVTGSTGSGVRIIGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 L ++ + + + + + + ++ +L++ S Sbjct: 61 SRTLDAYVQSQLRTENAGSAYASQIAAVLGQLQNVYGTPGNDGTLEAAYNRFTSALQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +V++ A+ + Q N + +Q +R++A++++ + +S + ++ +N Sbjct: 121 ASSGNPAAQSSVLNAAQALAQQLNATTGGIQTLRSNAEQDLSVSVSQASAAMQQIAQLNQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR-D 234 ++ + A +DQRD + ++S ++ I + N V+T+ G L V Sbjct: 181 RLQSVSVQDPAAATLMDQRDAAIDQLSRLMDIRAVTDGANQTSVFTTSGVQLVGGVYAST 240 Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + F +S T S+ N +G + + G+I A +Q+RD + Sbjct: 241 LTFNAQSSLTANSQWNADPAKSSVGTIICQLPNGAKIDMIASQGINSGQIAADVQLRDKI 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + QNQ+D+MA L + S+ P F D L Sbjct: 301 LVQAQNQVDQMAATLASALSDITTGGVPVTGPPSGFDLDPSNMLPGNSFSVTYTDSGNVS 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + N + D ++ Sbjct: 361 HTVTVVRVDDPAALPIPNTASNPNDSVIGVDFSGGLASIVSQLNAQIGATS 411 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 46/419 (10%), Positives = 109/419 (26%), Gaps = 10/419 (2%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L + F + + + + S L + + + + Sbjct: 207 SRLMDIRAVTDGANQTSVFTTSGVQLVGGVYASTLTFNAQSSLTANSQWNADPAKSSVGT 266 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + + +I AD ++ + + + A+ T Sbjct: 267 IICQLPNGAKIDMIASQGINSGQIAADVQLRDKILVQAQNQVDQMAATLASALSDITTGG 326 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 D+ + S ++ ++ T+ + Sbjct: 327 VPVTGPPSGFDLDPSNMLPGNSFSVTYTDSGNVSHTV----TVVRVDDPAALPIPNTASN 382 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + G + S G L + + V S + Sbjct: 383 PNDSVIGVDFSGGLASIVSQLNAQIGATSHLTFSASGSQLRVVDDGSGASTVTAASTTTT 442 Query: 305 DPIAGNSENVPGLFIADGI-----KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + F G++ I VN ++PS L + Sbjct: 443 VQSLASGNPQLPFFTDRASLYTGAITGSASQITGLAGRIQVNAALLADPSKLTIYSTSPV 502 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + D + +++ N A TL + + + + + Sbjct: 503 TPAGDTTRSDFIFDRLTSATFTYSPNTGLGAAAA-PFQGTLPSFLQQFVSLQSGAATTAK 561 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++V N + + + GVN+ E++ LI ++ SY + ++ M+QTLL+ Sbjct: 562 QVAQGQEIVVNTLQKKFDAEAGVNMDTEMANLIALQNSYAANAHVMTVVQSMMQTLLQA 620 >gi|256830170|ref|YP_003158898.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum DSM 4028] gi|256579346|gb|ACU90482.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum DSM 4028] Length = 697 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 97/278 (34%), Gaps = 12/278 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 + ++FN + + NI NA+ + Y R+ V Sbjct: 3 GIASLFNIGKQSLFANQAAIEVVGNNISNANTEGYSRQAVRFEDGYYISYSPGQLGTGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + SS + + L EM+ ++ +S Sbjct: 63 AAEVIRYFDEFTEVMYNTKSSEQQRWQKLYENLQNVEMIF-NESNAQGVNSALSAFWADW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ + N + + ++ +A + Q ++Q+++ D I E+ + L + Sbjct: 122 QTLATNPGDTSVRAALLGHASNLEQAIGVVQADLQRLQGQTDDTIAAEVQEINTLLKSIA 181 Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I + ++A+ DQR L+++++E I I+ I ++ + T G TL + Sbjct: 182 ELNSQITVTEETGKNNANGLRDQRASLVRELAEKIDINYIDNGLGNVTITTKAGHTLVDG 241 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + ++ + +S + V + S Sbjct: 242 TNAFRLAFESAPFSASLDSASTYAGTVSFNGESSSEYT 279 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 55/188 (29%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 L S + + F +D L E +N Sbjct: 509 TFGGALTASAPDNHLQITADADHDFAFGSDTTGLLAALGINTFFEGSDARTLSVNNSVRS 568 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + AG + K V T TL EY + Sbjct: 569 NTSRINTGHVNGAGEMNAGDNTMAAAIAALQTKAVATRTVTEGTTRQTLGEYYSTLVAKA 628 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + + N + + GVNL EE++ LIK + +Y + KLI + M Sbjct: 629 GSDTQSAKFNAEYQEALANDLKSRQESVSGVNLDEEMTNLIKFQHAYTAAAKLITTAESM 688 Query: 472 LQTLLEGV 479 L+ LL Sbjct: 689 LEVLLGLK 696 >gi|157363535|ref|YP_001470302.1| flagellar hook-associated protein FlgK [Thermotoga lettingae TMO] gi|157314139|gb|ABV33238.1| flagellar hook-associated protein FlgK [Thermotoga lettingae TMO] Length = 841 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 62/359 (17%), Positives = 114/359 (31%), Gaps = 27/359 (7%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSENKNMF 63 + NI N+ Y R+ + + V + Sbjct: 1 MNVVAHNIANSSTDGYSRQRPVIQTTSPIPLATLTQPSIPLMLGTGSQVTDVQRVRDLFL 60 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D S+ + S E + + + ++ + E + + Sbjct: 61 DIQYRQTSNRYSYFDTIYSNLHYIEQLFS-EPGDSGIRSLYDSFLSAAEEIITDPTNVAA 119 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + I AEE+V N +Q++R D ++EI ++ + L +N+ I+ A Sbjct: 120 KREFISRAEELVTNIKDLYTRLQQLREDINQEIYQTTDDINSMVERLAQINEQIRISVAF 179 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 +D LD+RD +L ++S+ IS ++ ++ D L +V +I E+ Sbjct: 180 GTTPNDLLDERDRILDELSQYANISYYETSDGQTILMFGDQVVLSGSVQTEIRAEQRPYA 239 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 E + N V GK+KAL +RD + + N LDE A L + Sbjct: 240 KGFFEL---------FAGNSKITVSDGKLKALFDLRDGGIVKYMNYLDEFALSLTDKLNL 290 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 +S I + + S P + G S Sbjct: 291 IHREGFDSSGKITGLNLFNPIVSSYGNDDPALYRILGSRKISSGPLYYATGLSGYTSES 349 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/412 (9%), Positives = 118/412 (28%), Gaps = 29/412 (7%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + S I + L + E ++ + + +++ L + + D L Sbjct: 451 SNVQSGSYTINFEETLSDGTKITETLNIAVDSSTTLNDIANQVNSQLSNVHALIVNDTLL 510 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 E + ++A AD + + + L + Sbjct: 511 IIPNGQMEFDPDRLSIVDDGGFFVQAGADYK-TYTVLDPSETLENIAFSMTNFDATNGFD 569 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 ++ D + +++ + L F+ M+ Sbjct: 570 IIINNTKIHIDPTRDTLEDLVTKINSTNTGVTADLTPHSAFVL--RAGESYGFDLMSFTI 627 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + + + +S+ + + L R+ +N+L Sbjct: 628 EGPQGLFEMLGLIDTNSDPVNFDADWSVSYTLISRNEDFDSVRNRLSLSEF--------- 678 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + ++ N L + N ++ + + Sbjct: 679 --LTVDKRQSYEPYFFVDQWNVSNALLLNAESLAVDIGKTLWNITWNATDFLPTGESNVE 736 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + NL D + E+ + L + + Sbjct: 737 IVNLISSSRYETLLSD---------------GKESFYEFMGGIVAELGVESESASKMKDN 781 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 ++++ + I ++ + GV+L EE++ +I+ + ++N S ++I D+M+ ++ Sbjct: 782 TELLRSEIDQARESVKGVSLDEEMTNMIQYQHAFNASARVITTIDEMIGRVI 833 >gi|219684598|ref|ZP_03539541.1| flagellar hook protein FlgE [Borrelia garinii PBr] gi|219671960|gb|EED29014.1| flagellar hook protein FlgE [Borrelia garinii PBr] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 47/490 (9%), Positives = 117/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++++ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPIIEEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L + Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTIGFDNEGALASLNGQPGQKGDVLQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVVGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|312147981|gb|ADQ30640.1| flagellar hook protein FlgE [Borrelia burgdorferi JD1] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 116/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R L+Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + Q+ + S Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFINPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|297583333|ref|YP_003699113.1| flagellar hook-associated protein FlgK [Bacillus selenitireducens MLS10] gi|297141790|gb|ADH98547.1| flagellar hook-associated protein FlgK [Bacillus selenitireducens MLS10] Length = 660 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 21/277 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S A+ N A ++ NI NA+ + Y R+ T + Sbjct: 3 STFHGLETARKALNTAQTSLHTVGHNIANANTEGYSRQRVNTKTAQPFPSPAFNKPDIPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + D ++ G E + ++ + + Sbjct: 63 QLGTGVKAGSIQRIRDEFLDLQYRGENNQHGYWSARHDAWMKVEDIM-NEPSEEGLANVM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +SL+ S N + V + + FN S +++I+ + +E+E ++ Sbjct: 122 DEFWESLQDLSVNPEDAGARSVVRQKGIALSETFNYSYDAIEQIQREYGEEVETSTKDIN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ +N I +D DQRDVL+ ++SE + I + + G Sbjct: 182 SLLRQINNMNRQIAAVEPHNMLPNDLYDQRDVLVDQLSEHLNIKIDRIGSGGNASSEASG 241 Query: 225 T---TLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 TL + R + ++ + + G Sbjct: 242 KYTITLLDDAGRSTGIKLVDGSQLDFNELEVQYQGDG 278 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 32/381 (8%), Positives = 108/381 (28%), Gaps = 24/381 (6%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T + S + + + ++ + D + Sbjct: 297 TEQSDRFNGDENSVRIDAFPSSGSYLAKIQSYGYIDAEGDEGGTFPEMLQELDTMVNTFT 356 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + +++ + + + + ++I + Sbjct: 357 AEFNAVHRTGWSLSEIENGEKHLQGVTGNGNGNGNQPDEEI-------------FGFDFF 403 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + + + S ++++ G ++ + A + + Sbjct: 404 DFNPGVGEDGKRAAKHLKVHESIMASTDNIAASGAGGTITGSMQPAEGTAYTGDGVIAAN 463 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-TIC 339 + L + + D D + I+ T Sbjct: 464 GRFSGSYDALTVSYDGATEEW------TFARDGAAFDPPETFSYDPDGEQSITINGLTFD 517 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + Y + + + + N++ + ++ + D N T Sbjct: 518 FSSFYDGDGNLTDAPDDAAVFAIDNLRRTEAFS---GDGSNALALANVKDTNLDFGGNTT 574 Query: 400 -LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 + Y + +G + S+++ L + V+ + ++E + V+L EE++ +I+ + +Y Sbjct: 575 NVQSYYQAVVGEMAVQTSEANRLAQNTDVLRDSVNERRQSVSSVSLDEEMTMMIQFQHAY 634 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 N + + + D++L ++ + Sbjct: 635 NAAARSLTAVDEILDRIINQM 655 >gi|126668558|ref|ZP_01739512.1| flagellar hook protein E [Marinobacter sp. ELB17] gi|126626963|gb|EAZ97606.1| flagellar hook protein E [Marinobacter sp. ELB17] Length = 435 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 62/476 (13%), Positives = 119/476 (25%), Gaps = 46/476 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + A+ NI NA + N + + + + Sbjct: 2 AFNTGLSGLRAAAVDLDVTGNNIANASTVGFKGSRVQFGDLYANGFLSSGNAPVGDGISV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S + F + ++ + + + N Sbjct: 62 QSVKQSFGQGNVSFTDNGLDFAIDGDGFFVLNNGGELRYSRAGQFGTDKDGFVVNNQNMR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + V +A + IR D + L ++ + TA Sbjct: 122 VQGFVA-----------DAAGNLSGIRDDLQIGSDNLSPQRTTNLRTDLNLDAREQVLTA 170 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D LD T + ++ S G T S Sbjct: 171 TPPIPFDPLDP---------------TTYNHVTATNIFDSLGNPHEVTQFYTKQAPASGS 215 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ + IDG V GS + D + + + I ++ Sbjct: 216 Q--SNWLLHLQIDGEAVGGAAGSTTTPPNFVPYELVFDQSGNLASADSNANGVISIANWV 273 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 KD + + QY +N Sbjct: 274 PKDGD-------------LNANGAASGAGAAFDLNLGSATQYGANFGVNDQRQDGFTTGR 320 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + +++ + Y + +K+ +A N L W+E S + Sbjct: 321 LSGLDVSQQGVIFARYTNGQSKSLGQVALASFNNTDGLSP--SGDTSWVETFESGQAVIG 378 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I S V+L EL LI +++Y + K I +D + QT++ Sbjct: 379 RPDSGTLGAIQSSSVEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 434 >gi|109899396|ref|YP_662651.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica T6c] gi|109701677|gb|ABG41597.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica T6c] Length = 709 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 145/400 (36%), Gaps = 7/400 (1%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKNMF 63 + + A++ ++Q ++ NI N + + YVR T V T Sbjct: 6 DLLSIARSGVEASNQLLSTTGNNIANVNTEGYVRERTNFVAELTGGVGQFTTERVMNTFA 65 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 L ++ + + S A+ + + A + NS + +S+ SL++ + + + Sbjct: 66 QNQLRRDTTNLAEHEAYWSKTAVLDNVFASEA--NSISSSMSRFFASLQTANDDPTNMSA 123 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + V+ +AE ++ T + + + + + E E ++ + + + N++I+ A+ Sbjct: 124 RQLVLGDAESMLGQMGTLSTFLAEKEREVNFEFEASLNKVNSLVESIASFNESIRIAQAN 183 Query: 184 K--HDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + ++QRD + ++S ++ I T N+ +++ + G +L FE Sbjct: 184 NRHDEPGALMNQRDNAVLELSSLVSIETRNSSNNDGSIMINLTSGESLVMQDGTFSVFEV 243 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 NS + +S + +G S N G I L + RD V+ + +L ++A + Sbjct: 244 NNSADLNYKSLQLTSNGKPTSLNLAETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTE 303 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + ++ + + G I T VN + + Sbjct: 304 AVNTQNRAGMDYDQQLGGEIFTRPITTALNYPGNADSTSIVNGRISKGGASEITSADYRV 363 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + D+ + A I N T Sbjct: 364 TIDGVTAGVPPTVDVTVELLNLDGSAVTDVNGAAITQNYT 403 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 54/450 (12%), Positives = 135/450 (30%), Gaps = 13/450 (2%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + T+ + + +GQ L + + + D+ Sbjct: 264 SLNLAETELGGTIGGLFRYRDEVLEPSRR----ELGQIALAVTEAVNTQNRAGMDYDQQL 319 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ + +Y N + I + + A +++ Sbjct: 320 GGEIFTRPITTALNYPGNADSTSIVNGRISKGGASEITSADYRVTIDGVTAGVPPTVDVT 379 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD--FLDQRDVLLQKISEIIGISTIVRNNNDM 217 + L S +T VN A + + A + + + + S+ G + + Sbjct: 380 VELLNLDGSAVTDVNGAAITQNYTGLTAQSGEYNEIFGGIELEFSKGTGYTVGDQFLLQP 439 Query: 218 VVYTSDGTTLFETVPRDINFEKM-------NSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 +D +F T P D+ ++ + + + V ++ S Sbjct: 440 TKDVADKIEVFTTRPEDLALASPIRIEAGEDNLGGSELVSTTVTNTFVDTAPFDSRSSGF 499 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + + + D V G+ D + + + Sbjct: 500 DGAGGIHAPGAAPGGGVGAPAAVRFNSATEYEVLDSAGTVITTVSGISSMDNLLEQASGT 559 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + ++ + + + + + +N + N+N + Sbjct: 560 PGWPAAFSALDNYPGYDFTLQGEPKAGDTFSISFNQNGLNDNRNGLIMANLQNENGMQLN 619 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 AG V+ E N +G + + +++ + + + Y + GV+L EE + Sbjct: 620 NAGSGDPVSFHEAYANIVGDIGQKAANADIAVKAGEALKLQSKDWYDSVSGVSLDEEAAN 679 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L++ +QSY S +L+ +M T+L V+ Sbjct: 680 LVRFQQSYAASARLLNTAQEMFDTILSMVR 709 >gi|115523523|ref|YP_780434.1| flagellar hook-associated protein [Rhodopseudomonas palustris BisA53] gi|115517470|gb|ABJ05454.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisA53] Length = 629 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 59/464 (12%), Positives = 141/464 (30%), Gaps = 31/464 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 MSL + A + + N+ NA+ YVR+ V V Sbjct: 1 MSLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTIDQVTTNSGSVGSGVRVYGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + +S G L F + + + + + + L ++++ S Sbjct: 61 NRQLDEYIQAQVRTETSGAGYTTLKSDFLQQLQSIYGNPDNTGTLENAFNGLTTAIQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A+ + Q N+ + +Q +R + ++ ++ +S++ V+N+ Sbjct: 121 TSPESQSARLGVLNAAQVMAQQLNSMTQGIQSLRNSCEIGLDDSVNYANNLMSQIAVINN 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ LDQRD + ++S+++ I + N + ++T G L Sbjct: 181 NLQANPLGGTSTTGEVAALLDQRDQYITELSQLMDIRVTFNSANQVTIFTPTGIQLVGNE 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281 + F + + + S + +++ GKI A +++RD Sbjct: 241 AAHLEFNAQGTVNPATTYDTTASKSTLGAVTISYANGGSIDLTNSIKSGKIAAYVELRDK 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS------------ENVPGLFIADGIKDLDNK 329 ++ Q Q+D+ A + + S+K + + N Sbjct: 301 LLVEAQTQVDQFAATMSSALSDKTTDGVDFPVTIPPAVPLPRTGSQLDLTDLKSGNTINL 360 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 R + + + + + + I N N + Sbjct: 361 TYTDALGAKKTLTIVRVDDPSVLPLSNTATVNPNDTVLGIDFSGGIAAAIAQLNANTSIN 420 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + N G + + + + Sbjct: 421 ADLRFSGTQAAFVVENNLAGTSNVDTASATTTVSSLTSGSPQLQ 464 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/412 (10%), Positives = 102/412 (24%), Gaps = 3/412 (0%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 ++ + + + S + G + Sbjct: 220 FNSANQVTIFTPTGIQLVGNEAAHLEFNAQGTVNPATTYDTTASKSTLGAVTISYANGGS 279 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + K+ +A +++ + + LS+ T Sbjct: 280 IDLTNSIKSGKIAAYVELRDKLLVEAQTQVDQFAATMSSALSDKTTDGVDFPVTIPPAVP 339 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 Q D+ K I ++ + + N + Sbjct: 340 LPRTGSQLDLTDLKSGNTINLTYTDALGAKKTLTIVRVDDPSVLPLSNTATVNPNDTVLG 399 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + + + S + + + A S Sbjct: 400 IDFSGGIAAAIAQLNANTSINADLRFSGTQAAFVVENNLAGTSNVDTASATTTVSSLTSG 459 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 G G++ I VN ++PS L + +K Sbjct: 460 SPQLQLFTDNGATYTGAITAQGSQMTGLAGRISVNNALIADPSKLITFATPTKAGDTTRP 519 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + G TLL + + + + + Sbjct: 520 DFLTKQLTATKF---QYSAQTGIGSTGTPYTGTLLSFLQQVTSTQGATAAAAAQIADGQN 576 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VV N + + S GVN+ EE++ L+ ++ +Y+ + +++ + M +TL++ Sbjct: 577 VVLNTLQKKLSTQSGVNMDEEMAHLLALQNAYSANARVMSTVNDMYKTLMQA 628 >gi|304310891|ref|YP_003810489.1| Flagellar hook-associated protein 1 [gamma proteobacterium HdN1] gi|301796624|emb|CBL44836.1| Flagellar hook-associated protein 1 [gamma proteobacterium HdN1] Length = 668 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 54/416 (12%), Positives = 134/416 (32%), Gaps = 20/416 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + ++ NI N Y R+ + + V Sbjct: 1 MADITQIGLSGLMVSKSALSTTSHNIVNVGTDGYSRQRVDISAIDPIKLGGKYIGQGAIV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 L + F + + D + + T + +S++ Sbjct: 61 NGISRITNTFLTDQLRRDTQNFNSYDSYFDFAGRVDSLLGDQ--STAITPTLQGFFNSVQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + + ++ A + FNT ++ + + ++ S + SEL Sbjct: 119 DLNNDPASIPIRQVMLSEANALTNRFNTVYEQLYQQNQALNTAMQTITSEITERASELAS 178 Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N A+K T + +D LDQRD L+ +S ++GIS +N + V G L Sbjct: 179 LNLALKVATTNGVGAQPNDLLDQRDQALKDLSTLVGISVSYNPDNTVDVSVGTGQPLVLG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 N + ++++ S + G++ LL++RD ++ N+L Sbjct: 239 GDSFQLTADDNVTGYNHLGVKLT--TANLTTDISSQISGGRLGGLLKVRDELIDPVFNEL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICVNPQYRS 346 ++ V+ + +++ + + + G I + + + Sbjct: 297 GRLSMVISDTVNKQHKLGMDLNSNLGNNFFTNINEPWMTSSRVATGVKNTGNAGFSVTID 356 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + ++ + N+ + + +AG +T+ Sbjct: 357 DSTKIKATDYTMRFDGTNLNLVDNATGQLAASLTPTGVPPESFALAGEGFTITIES 412 Score = 83.5 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 99/434 (22%), Gaps = 19/434 (4%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + L S+ L +++ + + + Sbjct: 249 NVTGYNHLGVKLTTANLTTDISSQISGGRLGGLLKVRDELIDPVFNELGRLSMVISDTVN 308 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + LG N E + A V+ + + ++ + Sbjct: 309 KQHKLGMDLNSNLGNNFFTNINEPWMTSSRVATGVKNTGNAGFSVTIDDSTKIKATDYTM 368 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-----EIIGISTIVRNNNDMVVYTSDGT 225 + + L V + + I I + + DM T Sbjct: 369 RFDGTNLNLVDNATGQLAASLTPTGVPPESFALAGEGFTITIESGTLQDGDMFTVAPTRT 428 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + N E++ + + + P G + + VP Sbjct: 429 YASQVGVKVNNVEQIAAASPVRTTWPAANTGRGYVEKVIVTETDDPVTGTAFVGARGVPP 488 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 V + + Sbjct: 489 TLALQPPYQIVFTS-------------GATYDVYDATNMAAPIASGTFVPNQSNLLLDGA 535 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 D ++ N+ I +S + + + E Sbjct: 536 GIVDSGYDVSYNGVPVTGDILNIEYNAGGITDNRNSALLGALRTSKT-VLGTSSYQETYA 594 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + D+ SQ + VN+ EE + LIK +Q Y ++K+I Sbjct: 595 KLVSGVGTRTRDAGIGQEASQSIMRQTQAQRDAVSAVNMDEEAADLIKFQQQYMATSKII 654 Query: 466 MFTDKMLQTLLEGV 479 + ++ +L V Sbjct: 655 QVSQQLFDAILGVV 668 >gi|148546713|ref|YP_001266815.1| flagellar hook-associated protein FlgK [Pseudomonas putida F1] gi|148510771|gb|ABQ77631.1| flagellar hook-associated protein FlgK [Pseudomonas putida F1] Length = 676 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 54/417 (12%), Positives = 139/417 (33%), Gaps = 15/417 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + ++ N + A ++ NI NAD ++Y R+ + T+ Sbjct: 1 MASLINIGMSGLGAAQSGMYTLGNNIANADVESYSRQQNVQKTKGGQQVGQVFIGSGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L +S + + + + ++ + T + S++ Sbjct: 61 ADVRRVYNAFIENQLRTTTSLSSEAS--SYLDQITPLDTSLSSSDTGITAALQSFFTSMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +ED + ++ +A+ + + FNT + ++ + ++ + + + + Sbjct: 119 DAAAKPTEDASRQLLLTSAQSLAKRFNTLSSQLNQQLSNINSNMTAITDQVNNLTKTIAG 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N+ I A +D LDQRD +++++++IG + R + VY +G L Sbjct: 179 LNEQIARVGAVSGQPNDLLDQRDGAVRELNKLIGTDVVER-DGTYDVYLKNGQALVLGNT 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + ++ + S+ G++ L++ R + N+L Sbjct: 238 TQTVGVEPTASDPGRL--SLVLNRGSTKMDITSSATGGELGGLIRYRSETLDPALNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ + + + + G + I + +++ + S Sbjct: 296 VALVVADQINSQLAQGIDKDGNFGATLFGDINSAKAMSERSVAKLGNSIGSGNLDVSIKD 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 G + + + GY + D + TL Sbjct: 356 TGKLTTSDYQVTFTSATGYSVRKLPEGTEMGSYDLNDTPPPVIDGFTLSLNGGGLSA 412 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 32/312 (10%), Positives = 89/312 (28%), Gaps = 8/312 (2%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIG--ISTIVRNNNDMVVYTSDGTTLFETVPR 233 + F +A+ + + ++ +++ I + N + D + T Sbjct: 365 QVTFTSATGYSVRKLPEGTEMGSYDLNDTPPPVIDGFTLSLNGGGLSAGDSFKITPTRNA 424 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 N E + + + + + + + L I D+ + Sbjct: 425 AANIETVLTDPKRLALASPLTATNGAGNKGTGVITQPTLTSQLDIYDATQRSQLQSGLKN 484 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + F ++ + G + + ++ + + Sbjct: 485 STPVKLVFGDETTSPQAYKLYDAKGTEIGSGTIVPGQANKLQLSVPMVDGSGNATGSSFT 544 Query: 354 GGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 N AG D N + V ++ + Sbjct: 545 FEMSVSGAPQNGDSYTVALTGAGSADNRNAQSVIDLQTKSTVEVGANGKGISFTDAYAKL 604 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + + +S ++ GV++ EE+ L+K +Q Y S+++I Sbjct: 605 VSNVGGKAGQAEMDSDATNALHSSALDSRNSLSGVSVDEEVGNLVKFQQYYTASSQIIKA 664 Query: 468 TDKMLQTLLEGV 479 + TL+ + Sbjct: 665 AQETFTTLINAL 676 >gi|225552055|ref|ZP_03772995.1| flagellar hook protein FlgE [Borrelia sp. SV1] gi|225371053|gb|EEH00483.1| flagellar hook protein FlgE [Borrelia sp. SV1] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGKKVINTASDIEDLIIPIGDKEGARSTKNV------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R L+Q+ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + Q+ + S Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSVTQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + + +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRELGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|224533123|ref|ZP_03673723.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|224511850|gb|EEF82251.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|312149691|gb|ADQ29762.1| flagellar hook protein FlgE [Borrelia burgdorferi N40] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R L+Q+ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|195941363|ref|ZP_03086745.1| flagellar hook protein FlgE [Borrelia burgdorferi 80a] gi|221217779|ref|ZP_03589247.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224533707|ref|ZP_03674295.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225549062|ref|ZP_03770037.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|225550122|ref|ZP_03771082.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|226320584|ref|ZP_03796144.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] gi|221192456|gb|EEE18675.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224513000|gb|EEF83363.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225369234|gb|EEG98687.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|225370288|gb|EEG99726.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|226234003|gb|EEH32724.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 115/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R L+Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|269965418|ref|ZP_06179537.1| flagellar hook-associated protein 1 [Vibrio alginolyticus 40B] gi|269829897|gb|EEZ84127.1| flagellar hook-associated protein 1 [Vibrio alginolyticus 40B] Length = 646 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 54/448 (12%), Positives = 138/448 (30%), Gaps = 20/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTDGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ S+ + Q + M + +++ D++++ Sbjct: 63 NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V+ +K++++ I + + E+ + Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + S GKI ALL++RD +P Q+++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGNGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A ++ + G + + + + + Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIEDIS 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + + +++ + G+ + A + Sbjct: 356 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDRSDSSFVLDGMKVQIGEGLAAGERVLLRP 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + I+ Sbjct: 416 TRTGAAIIKMETNDA--KAIAAQSYEAS 441 Score = 97.0 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 115/364 (31%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174 + D + F+ ++Q D + +I ++ +++ L V Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I+ +A K + D + +S + ++ V + E + Sbjct: 349 VYIEDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDRSDSSFVLDGMKVQIGEGLAAG 408 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + T + D +++ A + + + + + Sbjct: 409 ERVLLRPTRTGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + + + + ++ + + L +G Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G ++ KF N+ G + + TL++ N + Sbjct: 528 GLMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641 Query: 475 LLEG 478 +L+ Sbjct: 642 ILQL 645 >gi|219685755|ref|ZP_03540566.1| flagellar hook protein FlgE [Borrelia garinii Far04] gi|219672694|gb|EED29722.1| flagellar hook protein FlgE [Borrelia garinii Far04] Length = 442 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 47/490 (9%), Positives = 118/490 (24%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++++ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPIIEEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L + Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTIGFDNEGALASLNGQPGQKGDVLQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + Q+ + S Sbjct: 273 ITFNVVGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|152975165|ref|YP_001374682.1| flagellar hook protein FlgE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023917|gb|ABS21687.1| protein of unknown function DUF1078 domain protein [Bacillus cytotoxicus NVH 391-98] Length = 467 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/492 (9%), Positives = 123/492 (25%), Gaps = 39/492 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58 ++ + + + + NI NA Y ++ + + ++ Sbjct: 1 MIKSLYTSISGMSAMQNALSVTSNNIANAQTVGYKKQKAVFDDLLYNNTVGAKGDDTKAG 60 Query: 59 NKN--------MFDKVLHAHSSAIGQQRLLQSFEALKEMMS--ADDHYNNSPTHYISKLR 108 + +I + D N Sbjct: 61 TNPKSIGNGVKFSGTSTDYNGGSITMTGINGQVAIEGNGFFVVGDSQGNGVQYTRKGTFG 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 S +Y N + +D + + I I+ E+S+ + Sbjct: 121 KSENNYIVNGEGQYVLAYKLDEDGKPDTSHPA-----GPISIPLGSAIDGEVSSKGSLIG 175 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L+ N I + I+ + I + + + +DG + Sbjct: 176 NLSRDNKKIIHDFPV----------FNKSGDNITMRVQIEQVTELVDPDLPIGADGKPIL 225 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + S N+ P KA + + ++ + Sbjct: 226 PKDDKGNPIKPEKVEKPVPGKYKYTVLTRNNSKNEKEFTPIADDKAPGEKKPTLTKTLEF 285 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +DP+ + G + + + Sbjct: 286 DPITGKLTRTDEAVVRDPVT--------KEVIKGGQVDIPFGGDTFKLNLSQLTNLPTKD 337 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + ++ ++ Y D+ + VA L++ Sbjct: 338 TLDHKDVNGRAAAVAMDYKISDNGYVMVTYSDNSTRAVSQLAVATFKNQDGLMKVGNG-- 395 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++ + + + Q I V+L E L+ ++ + + K+I + Sbjct: 396 NYVPTASAGDPFIGVAEQNGAGKIIGGAQEGSNVDLSVEFVDLMLYQRGFQGNAKVIKVS 455 Query: 469 DKMLQTLLEGVK 480 D +L ++ ++ Sbjct: 456 DDVLNEVVNLIR 467 >gi|332162895|ref|YP_004299472.1| flagellar hook-associated protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667125|gb|ADZ43769.1| Flagellar hook-associated protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 456 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 70/481 (14%), Positives = 152/481 (31%), Gaps = 41/481 (8%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58 AQ+ A ++ N+ NA+ Y R+ + V V + Sbjct: 6 IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 ++ SS Q+ + E DD N + +SL S S N Sbjct: 66 SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S + VI+ A+ +V NFN+ + QK + D + IS + + N I Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + DQRD L++K+SE++ I + + +G L Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 S + + SS + ++ ++ ++ + MA +L Sbjct: 244 NTGSAQPQIDIH------FANSSTAIDMSCGASLGSINDYEQGLLKQTESIVQGMAELLT 297 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + G + + Sbjct: 298 TEVNNQLAAGYDLNGATGKALFAFDATNTTGMLSVTDIKASEL----------------- 340 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + K+ G ++ +K + + + + +G + S++ Sbjct: 341 --GFSDNKDNVGNATNLHKLLALKDKTITITGL----GSTKFSDASTALVGKVAFASSNN 394 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ V N + + GV+ EE + +++ ++Y + K+I +++ L Sbjct: 395 QQSITRTKNVLNSAILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLSL 454 Query: 479 V 479 + Sbjct: 455 I 455 >gi|70731823|ref|YP_261565.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] gi|68346122|gb|AAY93728.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] Length = 447 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 106/476 (22%), Gaps = 34/476 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---NKNM 62 FN + A++Q NI N + + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADVYSATKLGSGTQVIGNGVRL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + I + + + + E Y N Sbjct: 62 ANVSQQFTNGDINNTGNVLDMGIQGQGFFVLSTNGSLTYTRAGTFKTDKEGYITNSDGTA 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +A + + +R D ++ + +N Sbjct: 122 RLQGYAVDANGKI-----INGVLTDLRIDTSNLAPKPTDSISSTI----NLNSDSTPIDV 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + N + M Y E + + Sbjct: 173 GATTPAYVFNPTDNTTYTKQFSTPVYDTQGNKHVMDQYMIKTPNANEWQTYTLIDGRNPD 232 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +N S GK+ ++ + + + Sbjct: 233 GTAFTMAN--------QSPITMKFDSSGKLSSMTPPAAPGTTPYTITGNSIVMSAAAWTP 284 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N D+ T V Q + + Sbjct: 285 GTVTNGVFTPNGAKPAPNGVSIDMTKTGSVFGESTRSVIAQNGYSTGQISSL-------- 336 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + G ++ ++ + K +A L W E S Sbjct: 337 ----TIDGTGVMLANFSNEQTKPIGQISLASFTNEQGLQPVGG--TQWKETYSSGIPGYD 390 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + VNL EL LIK + +Y + K I ++QT+++ Sbjct: 391 APKTGTLGAIQSNSLEESNVNLTNELVNLIKAQSNYQANAKTISTQSTIMQTIIQM 446 >gi|283780143|ref|YP_003370898.1| flagellar hook-associated protein FlgK [Pirellula staleyi DSM 6068] gi|283438596|gb|ADB17038.1| flagellar hook-associated protein FlgK [Pirellula staleyi DSM 6068] Length = 565 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 140/387 (36%), Gaps = 20/387 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------V 50 M+LL+ A N + + NI NA+ Y+R+ + T +P V Sbjct: 1 MTLLSTLQIANNSLIASQLGLQVVGNNIANANTPGYIRQQVVLTPAPTQRYGGLLLGLGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + ++ L + S + + E + + + + ++ S Sbjct: 61 EVQAVIQQTDRFLEERLRSALSDLASGEAQEKTYVQLESLLG-ELSDTDLSTALTDFFGS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + + + + + + + V ++R D + +I+ + ++E+ Sbjct: 120 VQDILNQPDSESVRNLAVLQGQSLAADISRMHERVGQLRTDINTQIDQTAVEINGHINEI 179 Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I DA D+R ++L ++++I+ I+ I + D+ VY + Sbjct: 180 AKLNVQILQAEGGGTSASDAVGLRDRRSIVLNELAQILDITAIEQPTGDVSVYVGGDYLV 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 F+ R + E+ T + + ++ GK+ L+ RD+++ F Sbjct: 240 FQGTARPVTIEQTTDRGQTVSRIKL------IETDAPLFSSSGKLAGLVTSRDAILGGFL 293 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + L++ A L+ F++ + + +++ L + + + + Sbjct: 294 DSLNDFATTLVSEFNKVYSQGQGLSGYSQITSEFAVDNVEASLDEAGLKFSANSGSFDIL 353 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + G S + + ++ L L Sbjct: 354 VRNKQTGLSETTQIQVDLNGLDDDTSL 380 >gi|298529920|ref|ZP_07017322.1| flagellar hook-associated protein FlgK [Desulfonatronospira thiodismutans ASO3-1] gi|298509294|gb|EFI33198.1| flagellar hook-associated protein FlgK [Desulfonatronospira thiodismutans ASO3-1] Length = 701 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 125/387 (32%), Gaps = 16/387 (4%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS + A+ N + + NI N + + Y RR+ + Sbjct: 1 MSGIHALMNSGRTALFANQSAIQTTGNNIANVNTEGYRRREVRLEEAMALDTAPGQIGTG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + SS + + + E + ++ ++ Sbjct: 61 VNAKEVFRHFDSFIETQYNDKSSDREMWQTMHEQLSSLEALF-NESREGRMNEALADFWK 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + SK ++ + ++ N + Q F + +++ K R D+ I ++ + L E Sbjct: 120 DWQELSKRPDDNNVRTALLGNTGNLTQAFRSMDQDLTKNREQMDEFISQDVDRVNDILEE 179 Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + +N I + + ++ D+RD+L+++++E + I+ + + D+ + T G TL Sbjct: 180 IAEINKLINVREVPGKVNLNELRDKRDLLVRELAEKVDINYMDKGGGDVTIQTKAGHTLV 239 Query: 229 ETVPR---DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 E K S + I +G G+I + + S+ Sbjct: 240 EGSETYRLKFEDSKTFSDLKSDFDGQIKYNGDSGYEFTIQVTEDGEIGGDAKFKVSLDGG 299 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 D+ S + D + ++ D + + + Sbjct: 300 KNWLTDDQGNTREFSAEDYDNRVTLPVDDMEIWFDDYSNNALAEGDEFTIVPKSGLYWES 359 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + S + V N + L G Sbjct: 360 NTSSDMNITPQVMGDGNLNERRLTGGS 386 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/389 (11%), Positives = 109/389 (28%), Gaps = 1/389 (0%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + Y+N T + + + YS N + T++ + ++ +S + Sbjct: 313 FSAEDYDNRVTLPVDDMEIWFDDYSNNALAEGDEFTIVPKSGLYWESNTSSDMNITPQVM 372 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 E ++ + A K+ A + + + + + + Sbjct: 373 GDGNLNERRLTGGSLAGYFNFRDHYAGKYSEKLDALAESLAWEVNRIHSNGAGLEHMKYA 432 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + + GT + + E + + Sbjct: 433 EGTYQVNNLEAALGTPNAGLPHGEKLQNGNFTVHFYDEDGEVESMSPKFPTQDEMGNDPE 492 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + ++E+ + + + I+ + + + Sbjct: 493 DWTGNFDPDKHGLDHVMRAINELDNISAEPVNNRLTISADDDYEFSFSDDSTGLLAGLGI 552 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + + G + + ++ Sbjct: 553 NTFFQGHDASSLAVNEKVRDNIAH-INAGSVNGAGEANVGDNTTAKNIAELQDRKVDITT 611 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 T+ T+ EY + G + + S + ++ + + + GVNL EE+S Sbjct: 612 SFEGTTSQTIQEYYNSLSGNVGSDTSMTKFNADYNKSLTDDLDRRQQEKSGVNLDEEMSN 671 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LIK + SY + ++I D+M+QTLL Sbjct: 672 LIKYQHSYQAAARMISTADQMMQTLLGLK 700 >gi|318604259|emb|CBY25757.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica subsp. palearctica Y11] Length = 456 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 69/481 (14%), Positives = 153/481 (31%), Gaps = 41/481 (8%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58 AQ+ A ++ N+ NA+ Y R+ + V V + Sbjct: 6 IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 ++ SS Q+ + E DD N + +SL S S N Sbjct: 66 SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S + VI+ A+ +V NFN+ + QK + D + IS + + N I Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + DQRD L++K+SE++ I + + +G L Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 S + + +S + + ++ ++ ++ + MA +L Sbjct: 244 NTGSAQPQIDLH------FAGNSTAINMSCGASLGSINDYEQGLLKQTESIVQGMAELLT 297 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + G + + Sbjct: 298 TEVNNQLAAGYDLNGATGKALFAFDATNTTGMLSVTDIKASEL----------------- 340 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + K+ G ++ +K + + + + +G + S++ Sbjct: 341 --GFSDNKDNVGNATNLHKLLALKDKTITITGL----GSTKFSDASTALVGKVAFASSNN 394 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ V N + + GV+ EE + +++ ++Y + K+I +++ L Sbjct: 395 QQSITRTKNVLNSAILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLSL 454 Query: 479 V 479 + Sbjct: 455 I 455 >gi|251789174|ref|YP_003003895.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591] gi|247537795|gb|ACT06416.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591] Length = 640 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 163/437 (37%), Gaps = 15/437 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N + + A +++ NI N Y R++ + + VTV Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNALLAQNNGTNVSAGYIGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + + K L + + +E + ++ + ++S + I +L+ Sbjct: 61 VSINRDYNDFVSKQLRSAQTTSS--STAAYYEQISKIDNLLSSSSSSLSTNIQDFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S+ + +TV+ A +V F + + ++ + + + EI + +S + + ++ Sbjct: 119 NLTSNSSDSSVRQTVLGKASALVNQFKITDQYLRDMDTNINGEISVTVSQINTYAKQIAD 178 Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I + +D LDQRD L+ +++++GI V++ + + +G TL + Sbjct: 179 INDQIVRLKGANNGASPNDLLDQRDNLVNDLNKLVGIDVAVQDGDVYNISLKNGLTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + +S + SA+ G + LL R S + +NQL Sbjct: 239 KNFNTLAATPSSTDPTRTTVSYNDTIAGLSEVKESAITGGSLGGLLNFRTSTLDSARNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +MA +F+++ + + NV G + K + Y ++ Sbjct: 299 GQMALSFADAFNQQHKLGFDLNNVQGGDFFGVGSSVTLKSANNT-SAAELTSAYLNDTYS 357 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L+ G+ + + + D F + +G + + + Sbjct: 358 LQYNGTSWSVTRSDGTSASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGKTSISQT 417 Query: 411 LEKNRSDSHDLHMKSQV 427 + + L Sbjct: 418 APTGSTSAASLTRNDSN 434 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/401 (11%), Positives = 98/401 (24%), Gaps = 4/401 (0%) Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 L + + + YN++ ++ S + T+ ++ Q Sbjct: 242 NTLAATPSSTDPTRTTVSYNDTIAGLSEVKESAITGGSLGGLLNFRTSTLDSARNQLGQM 301 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 + A + ++ + S +T+ + + Sbjct: 302 ALSFADAFNQQHKLGFDLNNVQGGDFFGVGSSVTLKSANNTSAAELTSAYLNDTYSLQYN 361 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 S T + T DG T+ + + S Sbjct: 362 GTSWSVTRSDGTSASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGKTSISQTAPTG 421 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 S+ + IKA V P + S A + L Sbjct: 422 STSAASLTRNDSNYIKASDYNVKFVGPSASDWSITRLSDGANLSSSATYTAASGSTPASL 481 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D+ + + S S + + G + Sbjct: 482 IFDGMKLDITGTPAAKDLFMVKGVRDVIVDMSVKVTDSSKIAAAGAPLTSAGGGVSDNTN 541 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 N + ++ + + +G + S + + V ++ Sbjct: 542 AKALLNLQ----TAKVVENKSSVSQAYASLVGDIGNKTSTAKVTDTSQKNVVKQLTTEQQ 597 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + GVNL EE L++ +Q Y + K+I + LL Sbjct: 598 SVSGVNLDEEYGNLVRFQQYYMANAKVIQTASTIFDALLAI 638 >gi|120613066|ref|YP_972744.1| flagellar hook-associated protein FlgK [Acidovorax citrulli AAC00-1] gi|120591530|gb|ABM34970.1| flagellar hook-associated protein FlgK [Acidovorax citrulli AAC00-1] Length = 642 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/455 (11%), Positives = 135/455 (29%), Gaps = 19/455 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N + Y R+ + V V T Sbjct: 2 SLLNVGARALLANQVALQTTGHNIANVNTAGYSRQTLSLQTVQGQFTGGGYIGQGVDVQT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + A S + + + + + I+ + +S + Sbjct: 62 ILRNHNELLTRQAAAADSVQASDKTRAERLSQMQDVFG--GGTSGLGAAITDMLNSFKDV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + I +E +SA + +I+ +++ +++ L ++ VN Sbjct: 120 VASPMDMTARTVSITRMDETAARMRSSAGRLDEIQYTVKEQLTGDVNALNALSKQMASVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LDQRD ++++I+ + + + ++ + ++ + L Sbjct: 180 EQIARVKGNGQTPNDLLDQRDQIIREINRYVQTTQVAADDGTVGLFVAGSQPLVLGTTAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + +S S ++ G+ + G++ LL+ ++ + +N L Sbjct: 240 PLQVQESSMFPGSGQLKVYFSPPGIKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349 MA+ + + + + + + G + + T+ S+ Sbjct: 300 MAQAIGMTMNAQHKLGLTLDGEAGKDLFTVPASMPGYTNGTAVGTVAFTDATKFAASDYE 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + L N + AG + ++ Sbjct: 360 VRFTTPPAGQVVRLSDGKATAFTSLANLAGQQIDGLTFNLTTAGATGERVMFRPFSSAAR 419 Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTVGV 442 +E DL S + V Sbjct: 420 DIEAKVLSPRDLAAASPVNASMGAANAGSLQLSSV 454 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 57/193 (29%), Gaps = 1/193 (0%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL + + P G G+ + Sbjct: 450 QLSSVKAATSPYTAPPTPGGVTLTFTAGPPSTYGVTGSTVPASGTTGLAYTPGQPITIDG 509 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNS 407 + G+ V N+ + ++ N + + T+ + Sbjct: 510 WQITLKGTPGTGDTVKVGNVLDAQYGDAYKRNAGNASAIDALGDVKMFDDATMSDGYAGL 569 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + ++ S + ++ + GVNL EE + LI+ +Q+Y S K++ Sbjct: 570 MAQVGTRMQNAKYASDVSATISTNLERDRTAVSGVNLDEEAAKLIQYQQAYQASAKVLQI 629 Query: 468 TDKMLQTLLEGVK 480 + L++ ++ Sbjct: 630 AQSIFDNLIQTMR 642 >gi|26991070|ref|NP_746495.1| flagellar hook-associated protein FlgK [Pseudomonas putida KT2440] gi|24986104|gb|AAN69959.1|AE016634_8 flagellar hook-associated protein FlgK [Pseudomonas putida KT2440] Length = 680 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 58/404 (14%), Positives = 143/404 (35%), Gaps = 15/404 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ + + + + + NI NA Y R+ T+ T+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L +S Q + + AD + + ++ +L+ Sbjct: 61 ADVRRIYSSYLDNQLQTATSLQADSVTFQDQITSVDKLLAD--RDTGISSVLTAFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ A+ + FN + ++ + A + +++ + + + + Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I +AS + + LD R +++++E++G++ R + + VY G +L Sbjct: 179 YNKQITAASASGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + I+ SS+ S V G I LL+ R V+ N+L Sbjct: 238 ANTLSVEPGV--ADKSQVALRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLTPSMNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ S + + ++ G + I + ++ + + + Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAN 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 G + + + + Y + D + + DP I+ Sbjct: 356 SGALTTYDYEVKFTSASQYSVRRSDGTDMGSFDLNADPAPVIDG 399 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 68/256 (26%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ + N + + + G AL+Q Sbjct: 425 GSITTTLTDANKLAFAGPISAAAGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + D + G + + L + + Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGQDNKLSIAVPMLDAAGDPILDGSGN 544 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 R+ GGS + + + A + + T + Sbjct: 545 PRTFAVETTIGGSPAANDSFTLSFNADGKADNRNANALLDLQTKSTVGTNSGTGTSFTSA 604 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + S + +Q V +ES S GVNL +E + L+K + Y S++ Sbjct: 605 YASLVERVGAKASQATIDTTATQAVLKSATESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664 Query: 464 LIMFTDKMLQTLLEGV 479 +I + TL+ + Sbjct: 665 IIKAAQETFSTLINAL 680 >gi|320538206|ref|ZP_08038101.1| fagellar hook-basal body protein [Treponema phagedenis F0421] gi|320145023|gb|EFW36744.1| fagellar hook-basal body protein [Treponema phagedenis F0421] Length = 452 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 44/480 (9%), Positives = 114/480 (23%), Gaps = 41/480 (8%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR-------------SENK 60 N + I N+ N + + R R Sbjct: 1 MQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVGGVNPKEVGLGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + A+ + S + N + Sbjct: 61 MVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTRAGAFGVDRDGTLVNPAN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + + Q ++ + + + ++I+ + + + L + Sbjct: 121 GMRVQGWMAE-DIEGQQIINTSDQTEDLIIPIGQKIDAKATTDVAYACNLDKRLPELPEG 179 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +Q D+L + + + + + S +N + Sbjct: 180 ----------ANQADILRSTWATDFNVYDTFGEQHKLQMVFSRVPGTNNQWLATVNVDPE 229 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 N + DG + + P Q VL+ + Sbjct: 230 NQAGTETRVGIGTTDGTENTFIVSFDNYGHLASVTDTAGNVTAPAGQ--------VLVQA 281 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + P + I Q+ + Sbjct: 282 SYNVVGANPDEGGAPTRHTFNINLGEIGTSRNTI-------TQFAERSTTKAYQQDGYAM 334 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + ++ +AG L + N +++ N S + Sbjct: 335 GYLENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGEN--TYIQSNNSGIAN 392 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + V+L ++ + +I ++ + K I +D ML+T+L + Sbjct: 393 ITVSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSDTMLETVLNLKR 452 >gi|70729010|ref|YP_258744.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens Pf-5] gi|68343309|gb|AAY90915.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens Pf-5] Length = 683 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 53/403 (13%), Positives = 136/403 (33%), Gaps = 16/403 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ N + + + NI NAD Y R+ T+ T+ Sbjct: 2 SLLNIGMSGLAASQTSLMTTGNNIANADTAGYSRQQTVQGTKASSQNGNVFIGTGTTLAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + D L +S Q + + + +D T ++K S+++ Sbjct: 62 VRRVYNSFLDAQLRTATSLNSDAAAFQGQISPIDQLLSD--SGTGMTGALTKFFASVQNL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + +++ + ++ + + + FN+ + ++ + + + + + + + + +N Sbjct: 120 NAKPTDEASRQLLLSDTQALSNRFNSVSSQLNQQNTNINGNLANMADQVNKLANTVAQLN 179 Query: 175 DAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I + + + +D LD R+ ++++S IG+ R + + +Y G L Sbjct: 180 QKISELSTNGNGMPNDLLDARNETVRQLSTFIGVQVSERGS-SVDLYLGSGQPLVMGNSA 238 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + + ++ S + + G+I LL+ R V+ N+L + Sbjct: 239 NTLEVVQGKNDPSR--SALQLNRGSSSIDITNLTTGGEIGGLLRYRSEVLDPAMNELGRV 296 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A V+ + + G + + I + I + + Sbjct: 297 ALVVADQMNSLMAQGIDKNGDFGGNLFNDINSARMISQRSIGSATNSAGSGNFDVTIKDT 356 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 G + + + Y + D + + P I+ Sbjct: 357 GKLSTSDYTVTFSSATDYSVKRSDGTDMGSFSTTTSPAPVIDG 399 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 57/175 (32%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + S + ++ + I++ G + + Sbjct: 509 NKMGSGSIVPGQTNTLNLQINMLDASGAPITDGGTPPVTKTFGVQMTVAGAPAAGDSMNI 568 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 N AG D N + ++ + +TL++ I + S Sbjct: 569 SVNGAGSSDNRNGLALAGLQSKQTVDTGSASKGITLVDAYGKLIENVGAKASQGSLDSAA 628 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + + GVNL +E L+K +Q Y S+++I + TL+ + Sbjct: 629 TGTILANAKGARDSLSGVNLDDETGNLVKFQQYYTASSQIIKAAQETFSTLINSL 683 >gi|15594628|ref|NP_212417.1| flagellar hook protein FlgE [Borrelia burgdorferi B31] gi|223889009|ref|ZP_03623600.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226321601|ref|ZP_03797127.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] gi|2494528|sp|Q44767|FLGE_BORBU RecName: Full=Flagellar hook protein flgE gi|1165267|gb|AAA85606.1| FlgE [Borrelia burgdorferi] gi|2688183|gb|AAC66665.1| flagellar hook protein (flgE) [Borrelia burgdorferi B31] gi|223885825|gb|EEF56924.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226232790|gb|EEH31543.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] Length = 442 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 115/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R L+Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGANPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|229827759|ref|ZP_04453828.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC 49176] gi|229787958|gb|EEP24072.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC 49176] Length = 633 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 103/305 (33%), Gaps = 25/305 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------S 46 M L+ F + N A + NI NAD K YVR+ +T + Sbjct: 1 MGLMTSFGVGVSGLNAAQNSLNATAHNITNADTKGYVRQQVLTVDKEYAKTATVRGMDQT 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + R D S G + E + + + + Sbjct: 61 GHGTIIDKIRQLRDRFLDAAYRKESGRHGFYQAQAEAITEVENLFG-ELEGTTFQSSMEG 119 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 L +++ K + +++ A ++ + + +++ D + +++ + + Sbjct: 120 LWKAVQELQKEPESKVARTALVETANTFIERCQSISTQLKSFSQDLNLKVKNTVDRINTI 179 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + +N I+ + A + +A+D+ D+R+ LL ++ + +S + ++V Sbjct: 180 GKRIDELNTLIRKEEAGEQEANDYRDERNKLLDELGGYVKMSYKEVRDGTILVTVEGTQF 239 Query: 227 LFETVPRDI----------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + E +I + ++ + P + V + G +K LL Sbjct: 240 VTEFGVNEIGLKTTDDGLNLHTPVWNFDTNDDGEPREVFNFSVPPTAAADTDIGSLKGLL 299 Query: 277 QIRDS 281 R + Sbjct: 300 LSRGT 304 Score = 86.2 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 44/392 (11%), Positives = 99/392 (25%), Gaps = 16/392 (4%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T ++++ + L V + A AD +I Sbjct: 237 TQFVTEFGVNEIGLKTTDDGLNLHTPVWNFDTNDDGEPREVFNFSVPPTAAADTDIGSLK 296 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL-------QKISEIIGISTIVRN 213 L ++ + ++ K + + + + Sbjct: 297 GLLLSRGTQGRYTDIPVQPKPEDYENGEEDEYYISAMRAFEEAKTNYNNRTAPSLLTNTE 356 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + T + + + ++ + T ++ I Sbjct: 357 AQFDQLIHGLTTMINDVLAPNLTATWTDGGTPIWRNSEGKILEGDEIPPIDIDDLDEYKI 416 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 ++ + + + S S K P E + ++D K Sbjct: 417 EEKDALGKPTGRYKVSILDTKNAPVSSDSSKTPGNALFERKSRPRYKELDLEMDGKKVML 476 Query: 334 ISETICVNPQYRSNPSFLRD---------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + S S +VS L N Y + Sbjct: 477 YNSEDYDPNNEDSKYSMYSMGELEVNKNIRENVSLIPLSYNTNTGDYSMDTAAKLNKIWD 536 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 T ++EY + + L V + +GV+ Sbjct: 537 KKFAVLNPNTLTKNDIMEYYTSFTSEIANTGHTRKALAKSQDVTKTSVDNQRQQVLGVSS 596 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 EEL+ +IK +Q++N +++ I D+ML+ ++ Sbjct: 597 DEELTHMIKFQQAFNAASRYITVIDEMLEHVV 628 >gi|146281777|ref|YP_001171930.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501] gi|145569982|gb|ABP79088.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501] Length = 669 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 60/417 (14%), Positives = 139/417 (33%), Gaps = 15/417 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ + + + + A+ NI N D Y R+ + TV Sbjct: 1 MASLISIGLSGLSASQTALATTGNNIANVDTAGYSRQSVVQKSASAEFIGVGYVGNGTTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L + + + + + + AD + +S ++L+ Sbjct: 61 ADVRRIYSEYLNTQLRTSTGLDAEAQTYLTQINQTDALLAD--STTGISSVLSSFFEALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + ++N ++ ++ NA + + F++ ++ + ++ + + S + Sbjct: 119 TAAENPTDASARALLLTNASGLAERFSSVYSQLADQNTYINSQLSSMAEQVNQLASSIAN 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N AI +AS +D LD RD L +SE+IG++ ++ N + V+ G L Sbjct: 179 YNQAIVQASASGATPNDLLDARDQALVDLSELIGVTVVMEGN-NANVFIGSGQPLVMGNT 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ T + + S + S V G I L++ R+ V+ N+L Sbjct: 238 ASTLTAEPSTTDPTRL--NLMLTSGYSSVDVTSVVSGGSISGLVRYREEVLDPTLNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ + + + G + I + +++ + Sbjct: 296 LALVIADQVNSQLGQGIDLNGDFGTSLFSDINSALAASQRSLAQAGNSAGSGNLSVYIED 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + GY + D A + +L A Sbjct: 356 SSKLSTSDYEVTFSSATGYSVRRLSDGADLGSYDLSDDPAPVIDGFSLAMEAGTVAA 412 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 82/303 (27%), Gaps = 1/303 (0%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + F +A+ + D D+ +S+ + + G R Sbjct: 365 EVTFSSATGYSVRRLSDGADLGSYDLSDDPAPVIDGFSLAMEAGTVAAGDKFTIIPTRTA 424 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T S+ SS + + N + + Sbjct: 425 AGSIGVVMTDASKLAFAAPLVATSSSGNYGTGSISSVALASGSALDIYDAAANADTQASI 484 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 A S L+ G + G S T+ V+ Sbjct: 485 QNAMPVKLVFDAASGSAQGYTLYDVQGNALGTGSIVPGQSNTVTVSIAANPPSVPSAFEF 544 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTLLEYARNSIGWLEKN 414 ++ + + D+ N + D A ++ I + Sbjct: 545 ELAISGSPAAGDSFTVAFNADSDSDNRNALALLDLQTASTIGKHSITSTYSQLIETVGAK 604 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + + + + + + GVNL EE + LIK +Q Y + ++I +M T Sbjct: 605 ASQAALDASATSTILSQATANRESVSGVNLDEEAANLIKFQQYYTAAAQVIKAAQQMFDT 664 Query: 475 LLE 477 ++ Sbjct: 665 IIN 667 >gi|216264643|ref|ZP_03436635.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] gi|215981116|gb|EEC21923.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] Length = 442 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 116/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R L+Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + Q+ + S Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|90423518|ref|YP_531888.1| flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] gi|90105532|gb|ABD87569.1| Flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] Length = 618 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 69/448 (15%), Positives = 140/448 (31%), Gaps = 27/448 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59 L F+ A A + + +N+ NA YVRR T S V V T Sbjct: 2 LTTAFSTAVAGLEAAQKAIRVVSQNVGNAGTAGYVRRTVTTVASGPGNSSVAVGTVNRVF 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ K L +S + + + + + ++ SL+ + + S Sbjct: 62 EDAALKQLRLEASGAAYSSTKSNVLSQLDKLFGKPGDATALDGRMNAFTQSLQGLATDPS 121 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 TV++ A + + + A VQ++R+ + + ++ L + +N + Sbjct: 122 SVASRSTVLNKAAALTERIRSLAGNVQELRSGIENRLGSDVGAANNLLKSIASLNAKLAA 181 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN--- 236 + A LDQRD + ++S + + ++ + + M + T+ G L + Sbjct: 182 TSDDSAQA-GLLDQRDQQITQLSSYLDVKSMQQRDGAMTLMTTSGVVLVDRDAAATLSFD 240 Query: 237 ----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + S G V+ A+ G I A L++RD +P+ Sbjct: 241 GRGNLGPTSAYSTDPSARGVGTITATLPGGAVIDLGVRGALSSGSIAAQLELRDVALPLA 300 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET--------- 337 Q +LD++A L S ++K + S L +AD Sbjct: 301 QRRLDDLAFGLAQSLTDKSAVGTQSAAGVDLNLADLASLKPGNTITIPISAGGAIRNVIL 360 Query: 338 -ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + D + + F + + Sbjct: 361 VASSLASRPVDANQTIDANAQVQTFTIPAAPATARDYATAISAALSVVAPGLTAASTTSG 420 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMK 424 +TL + + + D+ Sbjct: 421 KLTLSGAGIQGVVAISTQPKSAGDVSGA 448 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 40/429 (9%), Positives = 106/429 (24%), Gaps = 12/429 (2%) Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK-NL 118 + + + ++S + M+ + S + Sbjct: 188 QAGLLDQRDQQITQLSSYLDVKSMQQRDGAMTLMTTSGVVLVDRDAAATLSFDGRGNLGP 247 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + A +R LR L Sbjct: 248 TSAYSTDPSARGVGTITATLPGGAVIDLGVRGALSSGSIAAQLELRDVALPLAQRRLDDL 307 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 ++ + ++++ N + ++ G + Sbjct: 308 AFGLAQSLTDKSAVGTQSAAGVDLNLADLASLKPGNTITIPISAGGAIRNVILVASSLAS 367 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA---- 294 + T ++N + ++ + I A L + + ++ Sbjct: 368 RPVDANQTIDANAQVQTFTIPAAPATARDYATAISAALSVVAPGLTAASTTSGKLTLSGA 427 Query: 295 --RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + ++ ++ S P + + R + + Sbjct: 428 GIQGVVAISTQPKSAGDVSGAHPWIAMFVDGLGNALVTGSLDGAPQRTGLAQRLSVNAAL 487 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-----TLLEYARNS 407 G S + Y + F V GI T+ +A+ Sbjct: 488 IGDSSVLVAASRTSSSPNPSRPQFVYDALTSSKLAFSSVNGIGGTQAPHVATVAAFAQEI 547 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + V +S + GVN+ EE+S L+ ++ +Y + +++ Sbjct: 548 VAAQGSAAAAAKQIDDGQTVALGVAQGRFSKSAGVNIDEEMSRLMSLQTAYAANARVLSA 607 Query: 468 TDKMLQTLL 476 +ML L+ Sbjct: 608 VREMLDVLM 616 >gi|224534234|ref|ZP_03674812.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] gi|224514336|gb|EEF84652.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] Length = 442 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 119/490 (24%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 A + N Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R ++Q+ + I+ N + + ++ E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L + P + Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASL-----NGQPSQKGD 267 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + ++ S + L + Q+ + S Sbjct: 268 ILQIPITFNVSEANVGEAGEQQTVNLKLGT--------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMESYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|260886641|ref|ZP_05897904.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185] gi|330839527|ref|YP_004414107.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] gi|260863784|gb|EEX78284.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185] gi|329747291|gb|AEC00648.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] Length = 496 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 47/503 (9%), Positives = 118/503 (23%), Gaps = 32/503 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 ++ + + + I NI N + + + Sbjct: 1 MMRSLFSGVSGLKSHQTRMDVIGNNIANVNTIGFKSSRVTFADTLYQTQSGAAAPTGTVG 60 Query: 54 -----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 S ++ D A + D Y Sbjct: 61 GTNPKQIGLGVGVASVDQLFGDASPQATGKNTDLALSGNGLFVVSRDAGGKDKY----YT 116 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + T K + + Sbjct: 117 RAGNFSFDANYNYVVPGSGYHVVGWNADENGSIDTKGTPTGIQIKDAMRSMGAKATTTIS 176 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + ++ +I+ +T + + +D ++ G + V ++ T Sbjct: 177 YKGNMNSSVPTITSIRNQTGAVVASPAKVDGVTNTSLTLTLSDGTTQTVTAKSNYEYRTK 236 Query: 223 DGTTLFETVPR-----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + +++ V P + S + G + + Q Sbjct: 237 CSMPITTIANVYDSLGNLHKVPFLFTKVPGSGTPPLMYDEWEVSLSPATTSGGTLDPVNQ 296 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + L + K + A I + Sbjct: 297 CSIKEDDGSWTTVKMNKKTLKFDQNGKYVSGAGDPELTLQNGAGSISGSGTPSATMTATV 356 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + S ++ N L Y + + VA + Sbjct: 357 DLKSLTQYSGSDTIKADYDGHSAGTLKEINTDQSGILTGTYTNGEKRALAQVAVAQFDNA 416 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L + N E N S + ++ S + ++ S V++ E + ++ ++ Sbjct: 417 PGLTKAGANLYT--ESNNSGTANIKTVSALGL-TLTPSALEMSNVDVANEFADMVVTQRG 473 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + ++K+I D+ML+T++ + Sbjct: 474 FQSNSKVITVGDEMLETVINMKR 496 >gi|241766920|ref|ZP_04764726.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] gi|241362624|gb|EER58472.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] Length = 425 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 125/483 (25%), Gaps = 70/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVVTQR 56 F + + N +S+ I NI NA+ + + N + + Sbjct: 2 SFQQGLSGLNASSKNLDVIGHNIANANTTGFKASRAEFAEMVASAIGSAGGNNAGIGVET 61 Query: 57 S-ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L +++ F L++ + + Sbjct: 62 ANVAQQFTQGNLTITGNSLDVAINGNGFFTLQQ------PDGSPAYTRAGNFKLDKTGNM 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +D + E ++ + N Sbjct: 116 VTNDNAKVMGYPVDPLTGLRSGTAPVPMVF----------PTAEPIPAKQTTKIMAGFNL 165 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A+ + + I R + D + + V Sbjct: 166 DARAPDAAGNP---------------AATPPIPATPRATYGTSINVYDSQGVAKPVSLYF 210 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N++ V + + VV++ G ++ Sbjct: 211 QKNGANTWDVYDKLDDPKASPPVVATPIG---------------------------QIKF 243 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G+ P+A ++E++ L IA + + + + Q+ + + Sbjct: 244 DNNGAIVSPAPVAPSTEHLLNLTIAPSPPNPNGLPTFPVDINLDKVTQFGTKFAVSDLTQ 303 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L N W+E Sbjct: 304 DGYTAGELTGINVENNGMIMTRYSNGVTRAEGQLALASFRNTQGLAAVGGN--NWVETFE 361 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S L + F + V+L EL ++ +++Y + + I D+++ TL Sbjct: 362 SGQPVLGTATDGNFGALRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTL 421 Query: 476 LEG 478 + Sbjct: 422 VNL 424 >gi|86360903|ref|YP_472790.1| flagellar hook-associated protein FlgK [Rhizobium etli CFN 42] gi|86285005|gb|ABC94063.1| flagellar hook-associated protein [Rhizobium etli CFN 42] Length = 453 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 127/412 (30%), Positives = 212/412 (51%), Gaps = 8/412 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I NN QQ + + NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y++ +++L++Y+ + S Sbjct: 61 TALLAQYLQSNAKDSAQQTLVTGLESLQSLMGGNDYETSPSTYLAAFQEALQTYATSPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A+++ + NT+ VQ IRA+AD EI ++S L LS+ N+A+K Sbjct: 121 TTAAQSAVTAAQDLANSLNTATDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T++ D LD R+ LL++IS I+G++++VR+NNDM +YTSDGT LFET+PR + F Sbjct: 181 TSTGADTSTALDAREKLLKQISSIVGVTSVVRDNNDMALYTSDGTVLFETMPRTVTFAST 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +Y +E N I+IDGV + + +GS G ++ALLQ+RD + P FQ+QLD++A+ L+ Sbjct: 241 ATYVAGTEGNAIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQDQLDQIAKALVQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353 FSE D + + + IS V + + LRD Sbjct: 301 VFSETDGSTSAPGLFTWTTASGTTGETPSDTDDVTGIASTISVNPAVVTSEGGDATKLRD 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G++S N +G+ D ++ + + F AG++T +L +YA Sbjct: 361 -GTISGITNLNTSGDSGFSDNLDALYQALTEQRSFSADAGLSTTQSLRDYAS 411 >gi|224370754|ref|YP_002604918.1| putative flagellar hook-associated protein [Desulfobacterium autotrophicum HRM2] gi|223693471|gb|ACN16754.1| putative flagellar hook-associated protein [Desulfobacterium autotrophicum HRM2] Length = 1268 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 61/450 (13%), Positives = 141/450 (31%), Gaps = 24/450 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 + + N AQ NI N +N +Y + + V+ Sbjct: 3 GISSTLNIAQGAIAAQQYGLNVTGNNIANVNNPDYSLQVADQKSNTPASYSGFLFGTGVS 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + L S+ +S+ ++ E D+ S + + S Sbjct: 63 VDQIQQRVNQLLENRLTDAKSSQAAFEEAESYLSVVESFF-DESSETSINSIMGQFWTSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S N V D A+ + + FN+ ++ +R D + EI + + ++ Sbjct: 122 QDLSNNPLGSSERVAVYDTAKNLTERFNSVNGDLAGLRTDLNSEISTTLGQINDITDQIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I A+ D+R+ L+ ++ +I I+T ++N +++ +G +L Sbjct: 182 DINLEITGLE-LNKTANGQRDERNALVDELGTLININTFEQSNGAIIINAGNGFSLVNGG 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 E ++ + + GK+ L +RD ++P +Q +D Sbjct: 241 DNYAL--------SFDEDQVMWQGSYGSKVDISDKISGGKLGGWLDLRDEIIPKYQADID 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A +I + + + + + D L ++ + Sbjct: 293 VLAENMIWTMNYQHSQGAGLTYFTDPVVGEYQADDSGLLSSLAFGD-RIDYGEDFKMWIM 351 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 GS V + + + + + T+ + R + Sbjct: 352 DQSGSEPVYRSVEVDMGISEAAVSDWEGTALGSVQASYQLTVVEG-ATVGD--REVAEFD 408 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 ++ S+ + I+ G Sbjct: 409 GSGLAEVQTGTSVSEALNLSIAGQTLTISG 438 Score = 86.2 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 46/436 (10%), Positives = 117/436 (26%), Gaps = 21/436 (4%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THY 103 V T ++ + + + + E + + Sbjct: 851 TVESGGKVGTLPEYGESPLVIRWTSSNGYGSFEIEGEDPPLTPETPFEVEVDGMTLVISD 910 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + + + S + L E + +++ + I + Sbjct: 911 GTLFTGDVFTITTDTSGNPLSTNGDGWPTGERLSDWHWTLDSFADQVNRTSSGISASATL 970 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 R E + + D ++ + S +G + Sbjct: 971 DNRLTFE----------------ASDTYHDVVNLSFENASGNVGFMAANTLVSVENYANL 1014 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 D T R + + T + + DG + ++ + Sbjct: 1015 DFEVQDLTFARADSGQWTVQNDPTGGNITLLPDGGDDDGFGIDFNGDEIADIKVSFKNKI 1074 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 D + +G + V + A ++ + Sbjct: 1075 TGEGSLSFDLLKTDASELSFAFGDDSGTTAGV--MAAAGINTFFSGNDSMTMAVNHALLN 1132 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + + + ++++ + D + + + TL Sbjct: 1133 SNYISAAMINNETGEISQGDNRNALNLSDLQFKTIDMETWSYDRGVDAESSLTLS-TLDS 1191 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 Y + IG L S V+ ++++ V+L EE+ LIK + ++ ++ Sbjct: 1192 YYQRMIGSLGIKSRSIQSSRQFSDVMVTNLTDQRDAISAVSLDEEMINLIKYQHAFGAAS 1251 Query: 463 KLIMFTDKMLQTLLEG 478 KL+ +D+ML TLL Sbjct: 1252 KLVTVSDEMLNTLLGM 1267 >gi|332525060|ref|ZP_08401240.1| flagellar hook-associated protein FlgK [Rubrivivax benzoatilyticus JA2] gi|332108349|gb|EGJ09573.1| flagellar hook-associated protein FlgK [Rubrivivax benzoatilyticus JA2] Length = 659 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 45/350 (12%), Positives = 120/350 (34%), Gaps = 13/350 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56 + + NI NA+ Y R+ + + V V + Sbjct: 1 MSLGMRAMTASYASMQVTGHNISNANVPGYSRQQAELATAKGQYTGAGFFGKGVDVASVT 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S L L E + + + + +++ + Sbjct: 61 RAHDQFLTRAAASAKSLAAMDETLSQRLQLLEDVF--PTGESGLGYSVGNFLNAMVDLAS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + V+ A+++ FN +A ++ ++A +++ +S + L +ND Sbjct: 119 RPGDTATRQVVLARAQDLATRFNAAAGQIDTLQAGVTADLKTTVSAVNGLTKSLAKINDQ 178 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I +D LD+RD ++ ++S I +ST++ ++ + V+ + G L Sbjct: 179 IAAARGLGQPPNDLLDERDRIVSELSSKIQVSTVMADDGTVGVFVAGGQNLVLGATSVDM 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + + +DG + +++ G + ALL+ ++ + +N + ++A Sbjct: 239 RVTTDPLDTSRSALAL-VDGDKLRMLDENSLGGGSMTALLRFQNEDLVDARNLVGQLAAG 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + + + G + + S Sbjct: 298 VASAVNGQQSLGLDLNGNTGKPLFQVGAPSARSDINNSRDASGNFAATLS 347 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 42/448 (9%), Positives = 98/448 (21%), Gaps = 11/448 (2%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 M V V ++ + + + R + ++ D++ Sbjct: 210 STVMADDGTVGVFVAGGQNLVLGATSVDMRVTTDPLDTSRSALALVDGDKLRMLDENSLG 269 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 ++ L + + + Q + Sbjct: 270 G--GSMTALLRFQNEDLVDARNLVGQLAAGVASAVNGQQSLGLDLNGNTGKPLFQVGAPS 327 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 S++ + + + Sbjct: 328 ARSDINNSRDASGNFAATLSISAPDGTVLKASDYLVRPDPATANGYVITRLSNPQETFQR 387 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALL 276 + G E + ++ S + G+ + + ++ Sbjct: 388 TADASGRFEVEGLEVTVSGTPAASDRFLLQPVARAASGMNALLQDPRQIAAASPLVSSVG 447 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + + G E Sbjct: 448 SANTGTASVASLTMVRTPDMTASAAISFSTTPSGQLQYSWTVTDGGGTSTTTGPLDWNEE 507 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 I N + LR G V +A N+ + G + Sbjct: 508 GIVPPEPDSINGARLRLAGVPRAGDTIAVNTIAPAYVGANNGNALALAGLRDQAIVGRSE 567 Query: 397 NVTLLEYA-------RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + + ++ + + S V N + S GVNL EE + Sbjct: 568 SGGVYSGGMVATDAYAAALADIAVRVQTTKAASTISTSVANQAELARSEVSGVNLDEEAA 627 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLE 477 LI+ +QSY + K++ + +TLL+ Sbjct: 628 RLIQYQQSYQAAAKVLQVAQSVFETLLQ 655 >gi|56695115|ref|YP_165462.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] gi|56676852|gb|AAV93518.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] Length = 431 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 45/487 (9%), Positives = 126/487 (25%), Gaps = 63/487 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + + A+I NI N+ Y R +T T Sbjct: 1 MTISSSLNAGVAALSANASRLATISDNIANSSTYGYKRVETDFHALVNASGRGKYTAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R+ + + D+ L + S++ + + + R E Sbjct: 61 RTTTQRLIDQRGSLVSTSNSTDLAVRGRGMLPVMRSSQLALPQQDMLLATTGSFRTDDEG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y K+ + +L + + ++ + ++ ++ + + ++ Sbjct: 121 YLKSEAGLVLMGWRANPDGSIPNLPRDTSDGLVPVQLSVNQLSGAPTTEMVLRMNLPATA 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 +A F + +I + + +N ++ Sbjct: 181 TEAGSAGDTQPLSVEYFDNLGKSENVQIELVPTVPATGESNEWTMI-------------- 226 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++ + G + + G + ++ + Sbjct: 227 -----------LRDTASGGAVVGEYTLTFSDARTDGGTLASVTATTGGAYDATTGSVVIN 275 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + A + A D Sbjct: 276 VAGGPMEINIGQLGASDGITQLSDTFAPVSITKDGT------------------------ 311 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + + + + ++ P+ + L+ +S + Sbjct: 312 -----AVGTMSRVEVDENGFVYAFFDNGVSRRVFQIPLVDMPNPNGLVAL--DSQTYEPS 364 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + L + ++ EL+ +I+ +++Y+ S K+I D+MLQ Sbjct: 365 RESGTFFLWDAGDGPTGDLVSFAREESTTDVATELTAMIQTQRAYSSSAKVIQTVDEMLQ 424 Query: 474 TLLEGVK 480 + Sbjct: 425 ETTNIKR 431 >gi|313497768|gb|ADR59134.1| FlgK [Pseudomonas putida BIRD-1] Length = 680 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 58/404 (14%), Positives = 142/404 (35%), Gaps = 15/404 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ + + + + + NI NA Y R+ T+ T+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L +S Q + + AD + + ++ +L+ Sbjct: 61 ADVRRIYSSYLDNQLQTATSLQADSLTFQDQITSVDKLLAD--RDTGISSVLTAFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ A+ + FN + ++ + A + +++ + + + + Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I +AS + + LD R +++++E++G++ R + + VY G +L Sbjct: 179 YNKQITAASASGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + I+ SS+ S V G I LL+ R V+ N+L Sbjct: 238 ANTLSVEPGV--ADKSQVALRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLTPSMNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ S + + ++ G + I + ++ + + + Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAN 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 G + + + Y + D + + DP I+ Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNADPAPVIDG 399 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 69/256 (26%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ + + N + + + G AL+Q Sbjct: 425 GSITTTLTDANKLAFAGPISATSGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + D + G + + L + + Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGTDNKLSVTVPMLDAAGDPILDGSGN 544 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 R+ GGS + + + A + + G + Sbjct: 545 PRTFAVETTIGGSPAANDSFTLSFNADGKADNRNATALLDLQTKSTVNTGSGGGTSFTSA 604 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ V SES S GVNL +E + L+K + Y S++ Sbjct: 605 YASLVERVGAKANQASIDSTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664 Query: 464 LIMFTDKMLQTLLEGV 479 +I + TL+ + Sbjct: 665 IIKAAQETFSTLINAL 680 >gi|149194904|ref|ZP_01871998.1| flagellar hook-associated protein [Caminibacter mediatlanticus TB-2] gi|149135063|gb|EDM23545.1| flagellar hook-associated protein [Caminibacter mediatlanticus TB-2] Length = 717 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 54/423 (12%), Positives = 131/423 (30%), Gaps = 32/423 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M++ + + A + N + NI NA N +YVR + + V Sbjct: 1 MAISSSLSTALSGLNAHQTAIQTTSNNISNASNPDYVRERAVFSTLPPINSIPGDIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + S + + ++ + D + I ++ Sbjct: 61 NISKIYRITDTFVFNQMVKTSQDLSKYSTMEKYLQQISTYF-PDVEDKGLFQDIKDFFNA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + N ++ + +++ + A +++ I+ A+++I+ I + ++ Sbjct: 120 WQTLASNPNDGSAKIDLASKTQKLSDTIHLLANKIKDIQKQANEQIKTNIDEANNIIKQI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNN--------DMVVYT 221 +N I A+ +A++ D+RD L +++ E++G+ + + Sbjct: 180 ANLNKQINSHEANNISNANELRDKRDALEKRLKELLGVKVFKNDTQSIYAQGEETIDYSK 239 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR-- 279 TL + + +N I I + G++ LLQIR Sbjct: 240 DYQITLGGYNLLNNETYHELKLIDFNGNNNIAIQTEDFKLKDITKSIDGEVGGLLQIRGY 299 Query: 280 ---------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 D + + L+ +A+ LI S + + D Sbjct: 300 EFNEDTTPKDGYLGDLLSSLNALAQGLIRSTNSIYSYSAQQSVQTDSNYDVVSISPDLAN 359 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + + + + + + + F ++ IN D N Sbjct: 360 -KPLPTIEKILKHPVRDGNMILNIYDDNGNFQEDITIPIDKNKSINQIIDDINSALNGKT 418 Query: 391 VAG 393 Sbjct: 419 TTT 421 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/466 (12%), Positives = 129/466 (27%), Gaps = 27/466 (5%) Query: 26 RNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85 NI +++ +D +I E ++ R + LL S A Sbjct: 268 NNIA-IQTEDFKLKDITKSIDGEVGGLLQIRGY-----EFNEDTTPKDGYLGDLLSSLNA 321 Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG-----KTVIDNAEEVVQNFNT 140 L + + + S + S DS + + ++ + Sbjct: 322 LAQGLIRSTNSIYSYSAQQSVQTDSNYDVVSISPDLANKPLPTIEKILKHPVRDGNMILN 381 Query: 141 SAREVQKIRADA------DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + D +K I I ++ L+ T + Sbjct: 382 IYDDNGNFQEDITIPIDKNKSINQIIDDINSALNGKTTTTAKLVNGQIKFVTPDGKESPN 441 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 ++ S + + + T++ E D+ + + + + + Sbjct: 442 VLVKDDGSLLFSALGDIEYMPLNKINTTNLPIPLENGNFDVVVYSSDGNELARRTITVNM 501 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + + I N+ + + ++ K + Sbjct: 502 DSKDPKYSTLEGI---------IAQINTPNIDDNKDNNSNNDVDDYYTAKLLNGQFILSP 552 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 G+ + + N + ++ + K G ++ Sbjct: 553 SQTNTYIGLDNDSVNFGGAFGVNKFFDGDNAFNINLNQELANDPSKIHAYKAPNEGNNEV 612 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 N + F N T+ + R + L + +Q +F I Sbjct: 613 ANEMLQMQFQTISFYKNGTKIEN-TISGFYRQTTSNLANQTQNITSKKETTQTLFTSIQN 671 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y + GVN+ EEL L K ++ Y + K+I ++ML L + Sbjct: 672 QYYSISGVNIDEELINLEKFQRGYQANAKVITTINQMLDALFGIKQ 717 >gi|329849966|ref|ZP_08264812.1| flagellar hook-associated protein FlgK [Asticcacaulis biprosthecum C19] gi|328841877|gb|EGF91447.1| flagellar hook-associated protein FlgK [Asticcacaulis biprosthecum C19] Length = 713 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 134/431 (31%), Gaps = 6/431 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL ++ N + A +Q NI N + Y+R+ + T VT Sbjct: 1 MSLTSIMNIGVSGLMTAQEQLRITSDNISNVNTPGYIRKVSHQTAVNIGGKGMGVTSGQV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +S + + D ++ + + ++ + Sbjct: 61 TLAADRYLQAAQLKATSTAAAADVTYELLDQIQSQFGDITDTSNVFNQAASALSTMAEAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + + + + N + + + +Q IR DAD I + ++ L ++ +N Sbjct: 121 EDPTSNASRQQTLSNLSSFLSEGSRISARIQTIRGDADARISSSVKSVNDLLKNISDLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I T + DA + + +S+++ ++ N + V T G L + Sbjct: 181 TISAATVAGDDATGAQTTQAKYIDDLSKLMDVNVTQNENGGVTVRTGTGMYLSGDKYATL 240 Query: 236 NFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 +++ + T+ I + G + + G+IK L++IRD+ +QL++ Sbjct: 241 SYQPSGNVDATTSFGAIVVTGINGEKRDLADNIQSGEIKGLMEIRDTTSVAVNDQLNQYM 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + + +T V N + Sbjct: 301 TQFAEQLNAAHNQGTSVPAPATMAGKTLSLTQEEAVTGFTGQTNLVTLDASGNITHRMLV 360 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + +G N D V N +TL N + Sbjct: 361 DFSAGTWSLDNGATSGTFTPGNFASDLTTAFDGAATVGFANGRMTLSASGTNGNTGIAVV 420 Query: 415 RSDSHDLHMKS 425 + + Sbjct: 421 DPAASATVTPA 431 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 54/390 (13%), Positives = 102/390 (26%), Gaps = 16/390 (4%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + L +S G T + T+A + Sbjct: 339 FTGQTNLVTLDASGNITHRMLVDFSAGTWSLDNGATSGTFTPGNFASDLTTAFDGAATVG 398 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 A+ + L S V A T + F + SE Sbjct: 399 FANGRMTLSASGTNGNTGIAVVDPAASATVTPAGKQGQGFSHYFGLNDVVTSEKPTNYRT 458 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + + S T P + + +S ++G+ +++ Sbjct: 459 GLTSTSDSGFASGTVTFQLKSPNGASLASVAFTPTAGQSMADMVNGLNNTTSGMGRYGTF 518 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + Q+ N L ++ + G + G Sbjct: 519 SLDGNGQLSFKGFGNPSNSLSIK---------------SDTTSRLGTGASFGEFFGVGGT 563 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 +S + + ++P + ++G D +K F Sbjct: 564 PATVSSGLAIRNAIYNDPKQMAMAKVNLNATGGLGALVSGDGSNGLDMSDIGSKTTTFAK 623 Query: 391 VA-GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 TL Y + G + +++ ++ + S GVNL EEL Sbjct: 624 TGLNSGGASTLERYGSDLAGQIGNLAANAKSHKESNEALLAEAQSRRSAYEGVNLDEELV 683 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +Q Y+ + +LI M TLLE V Sbjct: 684 NLTVYQQGYSAAGRLIQAAKDMYDTLLEMV 713 >gi|315127347|ref|YP_004069350.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913] gi|315015861|gb|ADT69199.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913] Length = 668 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 149/437 (34%), Gaps = 7/437 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MS + N A + S+ + +NI N + + YVR T T V Sbjct: 1 MS-FNLLNIANSGIRANSELLQTTSKNIANVNTEGYVRERTEFTTMIDNQVGRGQTYRLL 59 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 K L+ +S S + + + ++ +NS + I+ + ++++ S Sbjct: 60 NEFAQKQLNRDTSNKSFFDQFVSEASRVDQIFSE--KSNSLSTSINSMFNNVQEALNQPS 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178 + V+ +A+ ++ + A V + +A ++++E+ + ++ +N I Sbjct: 118 STVARSLVMSDAQNLIDQMDRLAGIVSEQKAVVNEQLEIFSEEANTLIESISSLNQEIAG 177 Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T ++ DA ++RD ++ +S++I I T+ N + V+ G + F Sbjct: 178 VHGTKNEADASSAYNERDKAIRDLSKLIDIETLDGPNGEKQVFMGTGEAVVMQNGSFNLF 237 Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + ++G V KGKI LL RD ++ QNQ+ +M Sbjct: 238 SISGDPDANFKELRLDVNGGQAVPLEIDPTKLKGKIGGLLAFRDDILVPAQNQIGQMGIA 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L SF++++ + ++ G I D S L Sbjct: 298 LADSFNQQNRLGMDANGELGGDIFDIPTVSAFVYQANTGTANMSATVEAGKGSELPASDF 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 V + D S + I + +T E + + Sbjct: 358 VITYTGNPNEVSIQPIDNKGEPLGSASLAVIPPSGIIDSAAITSGESFGLELNVTGAGNA 417 Query: 417 DSHDLHMKSQVVFNHIS 433 + +IS Sbjct: 418 GDQFQIKLNSGAAGNIS 434 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/373 (10%), Positives = 91/373 (24%), Gaps = 14/373 (3%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 D+ ++ + + A N + + + A + N Sbjct: 310 MDANGELGGDIFDIPTVSAFVYQANTGTANMSATVEAGKGSELPASDFVITYTGNPNEVS 369 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + + + + S + ++ N L Sbjct: 370 IQPIDNKGEPLGSASLAVIPPSGIIDSAAITSGESFGLELNVTGAGNAGDQFQIK----L 425 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +I+ + S DG+ + + + + + Sbjct: 426 NSGAAGNISLTTGRGEDIALASPIRTADGLDNTGTGTISPGDVSDVTTGSFTNP-LGLAN 484 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + D + V + G I P Sbjct: 485 GPINIVKTANANEYQLTDGNGTTTFTVIPPANNILAQAGPPYDGYGFDFNIEGVPATGDT 544 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + G + + +S A + + TL + Sbjct: 545 FNLEFNEG---------GFDDNRNGQKLADLQNSDLVRQNVVASASADNHKTLNQAYAGL 595 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + S + + Y + GVNL EE + L++ +QSY S +++ Sbjct: 596 VTDVGVVTSQAKTNGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYAASAQVLSA 655 Query: 468 TDKMLQTLLEGVK 480 + TLL + Sbjct: 656 ARSIFDTLLSAAR 668 >gi|254475161|ref|ZP_05088547.1| flagellar hook protein FlgE [Ruegeria sp. R11] gi|214029404|gb|EEB70239.1| flagellar hook protein FlgE [Ruegeria sp. R11] Length = 441 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 53/489 (10%), Positives = 144/489 (29%), Gaps = 64/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + + ASI NI N+ Y R T S + Sbjct: 8 MTISSSLNAGVSGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMGSSGGTYSAGGV 67 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111 R+ N + D+ L + ++A + + M + +N + R + Sbjct: 68 RTTNVRLIDERGPLVSTNNATDLAVRGRGMLPVTSMTEVEVGASNPQMMLTTTASFRTNA 127 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S +L + + ++ ++ +R + +K + + ++ Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDGLEPVRFNVNKLSGEPTTEMSLGVNLPA 187 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ T+ + + +I + + +N ++ T T Sbjct: 188 TATESGAAGTSENLSIEYYDNLGKSESLQIEFVPTVPATGESNEWTMIITDTATGATPIG 247 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + F+ ++ T N + + + + + + + + N L Sbjct: 248 EYTLTFD--DNRTSGGALNAVTLGSAGGAYDPATGSIIVNVAGGPMEINIGMIGDDNGLT 305 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +++ + KD Sbjct: 306 QLSDTFAPASISKD---------------------------------------------- 319 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + +Y ++ P+ + ++ R ++ Sbjct: 320 -----GAPVGNFTGVEIDEAGFVRANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 372 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S S+ L + I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 373 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 432 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 433 LQETTNIKR 441 >gi|15639714|ref|NP_219164.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025952|ref|YP_001933724.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum SS14] gi|6015169|sp|O07884|FLGE_TREPA RecName: Full=Flagellar hook protein flgE gi|2196893|gb|AAB61251.1| FlgE [Treponema pallidum] gi|3323028|gb|AAC65692.1| flagellar hook protein (flgE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018527|gb|ACD71145.1| flagellar hook protein [Treponema pallidum subsp. pallidum SS14] gi|291060091|gb|ADD72826.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Chicago] Length = 463 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 39/491 (7%), Positives = 111/491 (22%), Gaps = 41/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56 ++ + N + I N+ N + + R R Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSAAARPNEEVG 60 Query: 57 -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + + Sbjct: 61 GVNPKEVGLGVLIASIDTVHTQGALQTTGINTDVSIQGSGFFVLKSGEKTFFTRAGAFGV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 N + + + + + + S+ + Q + ++I+ + ++ + Sbjct: 121 DNAGTLVNPANGMRVQGWMAQ-DVAGERLINSSAQTQDLVIPIGQKIDAQQTSTVHYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + ++ DV + + + + + S Sbjct: 180 LDKRLPELA----------ADANEADVRKSTWTTDFQVYDSFGQQHTLQINFSRVPGTNN 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + DG + + P Q Sbjct: 230 QWQATVAVDPGTEVDTQTRVGVGTSDGAANTFIVNFDNFGHLASVTDTAGNVTGPTGQVL 289 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+ + + + I Q+ + Sbjct: 290 LE---------------ASYDVVGANPDDAGQVTRHAFTLNLGEIGTARNTITQFAERST 334 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + +++ +AG L + N Sbjct: 335 TKAYRQDGYAMGYLENFKIDQSGVITGVYSNGVSQDIGQLALAGFANQGGLEKAGEN--T 392 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ N S ++ + + V+L ++ + +I ++ + K I +D Sbjct: 393 YVQSNNSGIANISTSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQKGFQAGAKTIQTSD 452 Query: 470 KMLQTLLEGVK 480 ML T+L + Sbjct: 453 TMLDTVLSLKR 463 >gi|253688966|ref|YP_003018156.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755544|gb|ACT13620.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 568 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 65/409 (15%), Positives = 144/409 (35%), Gaps = 14/409 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + A +++ NI N Y R++ + + V V Sbjct: 1 MSNLINTAMSGLKGAQVALSTVSNNISNQAVTGYSRQNAILEQATSSSTSAGYIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + L A + + +E + ++ + S + I +L+ Sbjct: 61 VSINRQYNEFITNQLRAAQTTSS--SVTAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + +TV+ AE +V F + + ++ + + + +I+ + + + ++ Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQVNTYTEQIAS 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S +D LDQRD+L+ ++++++G+ V++ V +GT L + Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDLLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + V S S + G + LL R + +NQL Sbjct: 239 GTSNQLVAIGSSGDPTRLTVGYRDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + + + V G K + + + S Sbjct: 299 GQLALAFADAFNAQHQQGYDRDGVKGGDFFSFGKAVVLNDSKNAGNAVLTPSYTNSKDVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + W V L+ + GI +T Sbjct: 359 ATNYSIKYDGTNWQVTRLSDNSKFTAAVTTAGTPPESSLNFDGIKMTIT 407 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 43/425 (10%), Positives = 113/425 (26%), Gaps = 13/425 (3%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114 + + + + + + + + + P + + ++ Sbjct: 152 RDMDSGLNTQIQSTVGQVNTYTEQIASLNNEITKLMGANSGTMPNDLLDQRDLLVDQLNK 211 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + V + A + N + Q + + + R +++ +N Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNQLVAIGSSGDPTRLTVGYRDQTNDVVSLN 271 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 ++ + + D ++ ++ N Y DG + Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARNQLGQLALAFADAFNAQHQQGYDRDGVKGGDFFSFG 331 Query: 235 INFEKMNSYTVTSE-SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +S + P + + V + S G + ++ D+ Sbjct: 332 KAVVLNDSKNAGNAVLTPSYTNSKDVQATNYSIKYDGTNWQVTRLSDNSKFTAAVTTAGT 391 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 +F + F+ + D+ + I + + L D Sbjct: 392 PPESSLNFDGIKMTITGTPTTNDTFLLKPVNDVIIDMS----VAISDPSKIAAASVKLDD 447 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ N + + I + ++ +G + Sbjct: 448 AGNPVVDGSGNPVFGGVSDNTNAKALLALQNEKI------VGGKASISGAYAGLVGEIGN 501 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + Q V ++ + GVNL EE L++ +Q Y + ++I + Sbjct: 502 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYMANAQVIKTAQSIFD 561 Query: 474 TLLEG 478 LL Sbjct: 562 ALLAA 566 >gi|78485806|ref|YP_391731.1| hypothetical protein Tcr_1465 [Thiomicrospira crunogena XCL-2] gi|78364092|gb|ABB42057.1| Flagellar hook-associated protein FlgK [Thiomicrospira crunogena XCL-2] Length = 630 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 55/464 (11%), Positives = 135/464 (29%), Gaps = 26/464 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N N + N+ N + Y R+ T S V Sbjct: 1 MADMLNIGTAATNTFRRAIEVTSHNVANVGTEGYSRQRADITSSSASNAGYGFLGAGSRV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + L S + S E + A + ++ L DS + Sbjct: 61 SSIDRVYADYIQTQLVDAYSLKSRYDEQLSLSKQVEGIVA--SNDKGVQTFMQSLFDSFQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S N + V+ A+ + + + + + +I+ + + L+ + Sbjct: 119 DLSNNPTSSTSRDQVVSQAKNMETMLLNMSTVLGDTQEQVNGQIKNMTDEINKNLTTIQA 178 Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N+ + + +D LDQR+ ++++ + + I T + + + ++T +G + Sbjct: 179 INNQVANSISNGGQPPNDLLDQREQAIKELGQYMDIKTFRQEDGRIDIHTGNGRYPLISD 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + +++ + G++ +L R++++ N+L Sbjct: 239 NTITKLDADLTDYKNENRVEVYMQLGGQKVQVSDNIKGGQLGGVLDFRNNMLDRSMNELG 298 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG--------IKDLDNKLCQGISETICVNPQ 343 L+ S + + + PG K+ + I + Sbjct: 299 LALNGLVASTNWQHYQGYDQNGNPGQDFFKPLSTNAIQSAKNTGPEDGTNIQVSFNPVYD 358 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + Y D N+ + + F+P T Sbjct: 359 PSAPVQGTNPPYDPAAVPPADNAQPPTYGDKQNYLNQAMSAIGEFEPREYKLQFSTASNG 418 Query: 404 A---RNSIGWLEKNRSDSHDLHM--KSQVVFNHISESYSNTVGV 442 N G + + + L F + + V Sbjct: 419 FEIKDNKTGDPILDAAGNPVLITLGAPDNGFEDVEGLRFDVTNV 462 Score = 97.8 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 100/368 (27%), Gaps = 7/368 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S N+ LG + + ++ N + + A + + + Sbjct: 269 QVSDNIKGGQLGGVLDFRNNMLDRSMNELGLALNGLVASTNWQHYQGYDQNGNPGQDFFK 328 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ++A D + + + + V +D Sbjct: 329 PLSTNAIQSAKNTGPEDGTNIQVSFNPVYDPSAPVQGTNPPYDPAAVPPADNAQPPTYGD 388 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + S E + S+ K L + V+ + Sbjct: 389 KQNYLNQAMSAIGEFEPREYKLQFSTASNGFEIKDNKTGDPILDAAGNPVLITLGAPDNG 448 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 V F + A ++ + D E I Q + Sbjct: 449 FEDVEGLRFDVTNVAAAPADGDTFVVKPHQAMLEDFATTISSGEQIAARGQSPVDT---- 504 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 V+ + ++ S + A N + TLL + Sbjct: 505 ---GVAGLADEAPSPASVGDNVNIANMASLQSKKVLYSDATGNASETLLGGFSKMATNVG 561 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + VF+ I+ + GVNL EE + L++ +Q+Y S ++I + + Sbjct: 562 MYVHGTEIQLTSQENVFDQINARRESYSGVNLDEEAANLLRFQQAYQASAQIIQTSQSLF 621 Query: 473 QTLLEGVK 480 Q+LL V+ Sbjct: 622 QSLLGAVR 629 >gi|292487945|ref|YP_003530820.1| flagellar hook-filament junction protein 1 [Erwinia amylovora CFBP1430] gi|292899164|ref|YP_003538533.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946] gi|291199012|emb|CBJ46123.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946] gi|291553367|emb|CBA20412.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora CFBP1430] gi|312172066|emb|CBX80323.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora ATCC BAA-2158] Length = 551 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 78/553 (14%), Positives = 173/553 (31%), Gaps = 79/553 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + +S + NI N Y R+ T+ S V Sbjct: 1 MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E +K L A S+ + + M N+ + I SL+ Sbjct: 61 SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMM--SGTTNNLSTNIQDFFKSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S+ + V+ AE +V F S + + + + I+ + + + ++ Sbjct: 119 TLASNASDSSSRQAVLGKAEGLVNQFKVSDTYLANLDSGLNTSIKSTVGQVNNYAEQIAN 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I + + ++ LD+RD+L+ ++++++G++ ++ + +G +L + Sbjct: 179 INQQIAKLKGAGAGSEPNNLLDKRDLLVSELNKLVGVNVSQQDGGSYSISIGNGISLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +S + + + S G + LL R+ + +NQ Sbjct: 239 DRFEQLAAVPSSADPARTTIASVDSVTGAKTEIAESQFTSGSLGGLLAFRND-LDGVRNQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------------------ 331 + ++A L +F+ + +SE G Sbjct: 298 IGQLALALGSNFNTQHQAGVDSEGDKGEAFFKLGSPSATSNSLNKGNASLSVAYDASKTG 357 Query: 332 --------QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + N S ++ + DS+ Sbjct: 358 DVKASNYKMTLENGSWNLVRLADNSKVTDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYI 417 Query: 384 KNFIFDPVAGINTNVT-----------------------LLEYARNSIGWLEKNRSDSHD 420 + ++G++ N+T L ++ I Sbjct: 418 IKPVSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYAS 477 Query: 421 LHMKSQVVFNHISESYSNTVGV--------------NLQEELSFLIKVEQSYNISNKLIM 466 L + + S + V NL EE S L + +Q Y + +++ Sbjct: 478 LVADVGNKTSSLEASNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQ 537 Query: 467 FTDKMLQTLLEGV 479 + Q+LL V Sbjct: 538 TASTLFQSLLTAV 550 >gi|13472592|ref|NP_104159.1| flagellar hook protein FlgE [Mesorhizobium loti MAFF303099] gi|14023338|dbj|BAB49945.1| flagellar hook protein; FlgE [Mesorhizobium loti MAFF303099] Length = 418 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 42/481 (8%), Positives = 108/481 (22%), Gaps = 64/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + ++ NI N+D Y R + T S Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + D + N + Sbjct: 61 TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPFLTRAGAFVPDAQGRLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L N ++ + + Sbjct: 121 GFQLMAYSYANG------------------------------TPAATVNGFEGLQPVVIS 150 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 L + + + N + + ++ + + Sbjct: 151 DQGLTATPSTLGTYSGNLPAGATPVAAANLPGANASTAQYTSKSSMVAYDNLGNKKLLDV 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T T D + G + D+ ++ + Sbjct: 211 YFTNTGTGTWQVAVFDQSKATPGTSFPYTGGALGTANLTFDTTTGKLTGAPTSVSFTV-- 268 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + Q + + + + Sbjct: 269 -----------------------------PGGASLNLDLSKLTQLGTGFTVSDAQVNGNA 299 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y D K P+A + + L N S + Sbjct: 300 PSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQLKALPGNVYAQ--GTDSGAI 357 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ I V++ EEL+ +I ++SY ++K+ ++ L+ Sbjct: 358 RVGFANEGKAGSIISGALENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMDVLVNLK 417 Query: 480 K 480 + Sbjct: 418 R 418 >gi|2689167|emb|CAA06002.1| hook associated flagellar protein 1 [Borrelia burgdorferi] Length = 253 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 87/250 (34%), Gaps = 18/250 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44 S + + ++ N+ NA Y R+ Sbjct: 3 STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + + + + S +G F ++ E + ++ + S + Sbjct: 63 QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + +S + K +++ + + +++I A+ EI++ Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 ++ + +N I A K + +D +D RD++++K+ II +S + + + + ++G Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241 Query: 225 TTLFETVPRD 234 L + + Sbjct: 242 RHLVQGSIAN 251 >gi|269968150|ref|ZP_06182183.1| putative flagellar hook-associated protein 1 [Vibrio alginolyticus 40B] gi|269827218|gb|EEZ81519.1| putative flagellar hook-associated protein 1 [Vibrio alginolyticus 40B] Length = 378 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 54/405 (13%), Positives = 127/405 (31%), Gaps = 29/405 (7%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 S + E S + + L +L + + +I+ +E Sbjct: 2 AAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVKPESIPYRQQIINESEA 59 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + FNT + D + +++ + + VN + + + +D+ Sbjct: 60 LARRFNTLTESLYNQHKDMSDQRNAALNHANSLMENIAKVNKQLVEMQGTGGNPSQLMDE 119 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 RD L+ ++S+ I I T +++ + V + G L + + Sbjct: 120 RDRLIGELSQTIEIKTTQQHDGSVQVTLTSGQPLVMGTDHGKLEAIPDPSDPYLADLHVT 179 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + GK+ A+ + V+ Q L++MA+ L ++ + Sbjct: 180 FSNQSFAIGDS---LGGKLGAINDYQTEVLKPNQLALNDMAKALADEYNAVLATGKDLNG 236 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 PG + L + ++ G D Sbjct: 237 NPGKPLFSYDPANPAAS--------------------LDITKLTPDELAFSSDGTPGNAD 276 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + NK +V+L + + +G ++ + + Sbjct: 277 ALQSLIELSNKPVAVSG----YGSVSLNDAFSSMVGQTAIKARQANADYQAKLAMNKQAH 332 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + N VN EE + L+ ++N + K+I +++L ++L+ Sbjct: 333 AARDNVSSVNSDEEAANLMMFANAHNANMKVISTANQLLDSILQL 377 >gi|271500072|ref|YP_003333097.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586] gi|270343627|gb|ACZ76392.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586] Length = 638 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 66/417 (15%), Positives = 155/417 (37%), Gaps = 15/417 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N + + A +++ NI N Y R++ + + VTV Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNALLAQNNGTTTSAGYIGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + + K L A + + + + + + + I +L+ Sbjct: 61 VSINRDYNDFIAKQLRAAQATSSATTSYYDQISKIDNLLSSSSSSL--STSIQDFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S+ + +TV+ A +V F + + ++ + ++ + E+ + ++ + + ++ Sbjct: 119 NLTSNSSDSSVRQTVLGKANALVNQFKITDQYLRDMDSNINGELSVTVTQINTYAQQIAD 178 Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I + +D LDQRD L+ +++++G+ V++ N V +G TL + Sbjct: 179 INDQIVRLKGANNGAAPNDLLDQRDSLVDSLNKLVGVDVAVQDGNMYNVSLKNGLTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + VS + S + G + LL R S + +NQL Sbjct: 239 KSFNTLVATTSSTDPTRTTIAYNDAIAGVSEVKESTITGGSLGGLLNFRTSTLDSARNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +MA +F+++ + N G + K + ++ Y S+ Sbjct: 299 GQMALAFSDAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNT-SAAELSSSYLSDTYS 357 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 ++ G+ + + D F + +G + + + Sbjct: 358 MQYNGTSWSVTRSDGTTASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSSI 414 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 95/361 (26%), Gaps = 13/361 (3%) Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + N + R + + +N+A + Sbjct: 277 GGSLGGLLNFRTSTLDSARNQLGQMALAFSDAFNQQHKAGFDLNNAQGGDFFGVGSSVTL 336 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 ++ ++S T N + + + + +T+ + Sbjct: 337 KSAKNTSAAELSSSYLSDTYSMQYNGTSWSVTRSDGTTASSTLSGSALTFDGFTIDISGS 396 Query: 251 PIFIDG-----VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 D S+ P A L D+ + + ++S Sbjct: 397 AASGDTFSFKVSPGQSSISQTAPAAASAASLTRNDNNYIKASDYTVKFVGPAANNWSITR 456 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + + A + + G+ I P + + V + Sbjct: 457 LSDGADLSSSATYAAASGSTPASLIFDGMKLDITGTPAAKDVFTVKGVRDVVVGMSVVIS 516 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGIN--------TNVTLLEYARNSIGWLEKNRSD 417 + + + + A +N ++ + + +G + S Sbjct: 517 DSSKIAAAGSSLTSTGGGVSDNTNAKALLNLQTVKVVEGKSSISQAYASLVGDIGNKTST 576 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + V + ++ + GVNL EE L++ +Q Y + K+I + +LL Sbjct: 577 AKVTDTSQKNVVSQLTTEQQSVSGVNLDEEYGDLVRFQQYYMANAKVIQTASTIFDSLLA 636 Query: 478 G 478 Sbjct: 637 I 637 >gi|218249383|ref|YP_002374806.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] gi|218164571|gb|ACK74632.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] Length = 442 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 114/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + D E E I+ Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D K+ LD+R L+Q+ + I+ N + + + E Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGANPADIARGTWVVNKSLYDSFGNVGVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|295690745|ref|YP_003594438.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] gi|295432648|gb|ADG11820.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] Length = 703 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 52/377 (13%), Positives = 119/377 (31%), Gaps = 9/377 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL ++ + A + A NI N + YVR+ + V++ Sbjct: 1 MSLNSIMSTATSGMTAAQTGLRVTSDNIANVNTNGYVRKTISQSNMLSNGMGIGVSIDAI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S + ++ + + D + S + + + + Sbjct: 61 KRATDRFLTTASLNAASDSSRATVIAQSLNNVQQLFGDPTGSTSFFTRLDDVFTAFSAAQ 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S +L + ++ + + + K+ D D I ++ + LS++ +N Sbjct: 121 DDPSSALLRTQALTRVDQFLSESSRITSSISKLGKDVDTRISGDVDRVNDLLSQIDALNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + DA + + L+ ++S+++ + R +VV +++G L + Sbjct: 181 DITRAKVAGTDATGAENVQSGLVDELSKLMNVQVTPRTMGGVVVRSTEGLPLAGDGAAKV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + T V N G+I+ L+++R++ + +QL E Sbjct: 241 TYQTSPTATGYLTVQLANGSPVPTPLNV----SSGEIRGLMEVRNNELVNMSDQLGEFTS 296 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + A L D D L +T D Sbjct: 297 RAAEEINRAANGASAVPAPSTLSGRDTGLDDQAALTGFTGKTTIALTDSSGVIQRRIDID 356 Query: 356 SVSKKFLWNVKNLAGYP 372 + N + Sbjct: 357 FDAGTMSINGAAGPAFT 373 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 56/441 (12%), Positives = 115/441 (26%), Gaps = 7/441 (1%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 +P NV+ R + +++++ ++ ++ + + Sbjct: 264 TPLNVSSGEIRGLMEVRNNELVNMSDQLGEFTSRAAEEINRAANGASAVPAPSTLSGRDT 323 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 L D I + + + A ++ L Sbjct: 324 GLDDQAALTGFTGKTTIALTDSSGVIQRRIDIDFDAGTMSINGAAGPAFTPANFMTQLNT 383 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + + T + D G S N+ + Sbjct: 384 AMGGMGGAGFTGGALTLTGSGGLGVAVADDATTPSNKAGKGFSHYFGLNDIVRTNGYSPY 443 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T F ++ I V+V + G + + AL V Sbjct: 444 ETGLTATDAHGFTSGTMTIRLTDVEGGRIRDVIVDAPVGGTMQDL-LDALNSRASGVGLY 502 Query: 286 FQNQLDE----MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 Q L+ + + +E G + + E VN Sbjct: 503 GQFSLNTKGQMTFASNTTTPVTMSVVGDTTERGVGGPSVSQLFGVGPAERSTRGEKFFVN 562 Query: 342 PQYRSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INTNVT 399 NP+ L +++ G S + F ++ Sbjct: 563 TAMDQNPTLLPFAQLDLTQAVGGLAALAIGDGRGALALAKSGDTVTSFSAAGDASPATMS 622 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + YA + G + + + + ++ V + + GVNL EEL L +Q++N Sbjct: 623 VSRYAADFSGSIARKANTAESRKDSAEAVSAEVDSQRQSEEGVNLDEELINLTTYQQAFN 682 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 S +LI M L + V+ Sbjct: 683 ASARLIQAAKDMYDVLTDLVR 703 >gi|37679153|ref|NP_933762.1| flagellar hook-associated protein FlgK [Vibrio vulnificus YJ016] gi|320157103|ref|YP_004189482.1| flagellar hook-associated protein FlgK [Vibrio vulnificus MO6-24/O] gi|37197895|dbj|BAC93733.1| flagellar hook-associated protein FlgK [Vibrio vulnificus YJ016] gi|319932415|gb|ADV87279.1| flagellar hook-associated protein FlgK [Vibrio vulnificus MO6-24/O] Length = 638 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 57/448 (12%), Positives = 144/448 (32%), Gaps = 18/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + +++ + M + +++ D+L++ Sbjct: 63 NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKK-IPENLNEWFDALKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K +++ A + + N +++ +K++++ I + + E+ + Sbjct: 122 LADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + +G + S GK+ A+L +RD +P ++L Sbjct: 239 ASQL-KMIDGYPDVHQRRLAIYEGKSLKP-IKSVGLDGKLGAMLDMRDKQIPYVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G I + + ++ + + L Sbjct: 297 MAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS-QAEVAVFINDLA 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ N S + + G+ V A I Sbjct: 356 SLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILLRP 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 S + + ++T Sbjct: 416 TRNSAAQMQVATNDASMIAAQSYEASTS 443 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 50/153 (32%) Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 ++ + + S ++ N K A + Sbjct: 485 SPEPYPPKGPVSVTLPSSHPSYKEGKETVFELTAGAWANDKFTANLVPSEGDNGNLRKMQ 544 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 I T+++ N + S + L +Q E ++ GVNL Sbjct: 545 QIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANIAQHENEAAQERIASISGVNLD 604 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE + +++ +Q+Y S++++ + T+L+ Sbjct: 605 EEAANMMRFQQAYMASSRIMQAANDTFNTILQL 637 >gi|209963559|ref|YP_002296474.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] gi|209957025|gb|ACI97661.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] Length = 434 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 52/491 (10%), Positives = 126/491 (25%), Gaps = 68/491 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54 MS+ + + S +FA+I NI N+ Y R + SP + + Sbjct: 1 MSIYSAMYSGVSGLAAQSAKFAAISDNISNSSTVGYKRSGVQFSTLVTSASSPGSYSAGG 60 Query: 55 QRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSL 111 ++ + ++ A +SA + F + +A + S R Sbjct: 61 VQADLHTEVSRGGIVQATNSATDMAISGRGFFVVSNRSAAVNGEAPSYMLTRSGAFRVDE 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELEISNLRRFLSE 169 N + L + +VV + S ++ + + + + + + Sbjct: 121 NGNLHNTAGYFLQGWKLGPDGKVVGGEPSRTSFTGLETVNLSSITGLAKATTQIDFAANL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + Sbjct: 181 PASQTGKTPPAQPFSTSVDYYTPLGGTGRLTL-----------------------EWAPQ 217 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + N + T +N +F S GS ++ A + Sbjct: 218 SAANEWNLTIYDGTTSLGTANIVFNGNTATSGPPGSLNTMSEVGASPTLDVDAATGSIKL 277 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +++ Q+ + Sbjct: 278 DVNGQPIVVNLGRPNQTGGL--------------------------------TQWGDDYV 305 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + Y + + PVA + L + Sbjct: 306 PTKINKDGASYAPLERVEIGDDGVMTAIYKNGLRQAVYQIPVADVTNPDGLRRM--DGNA 363 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + L + + V++ EEL+ +I+ +++Y+ + K+I D Sbjct: 364 FQVSRESGDYYLWDAGSGKAGAVDGAALEASNVDIAEELTSIIETQRAYSSNAKIIQTAD 423 Query: 470 KMLQTLLEGVK 480 +ML + ++ Sbjct: 424 EMLDEVSRLMR 434 >gi|158320521|ref|YP_001513028.1| hypothetical protein Clos_1488 [Alkaliphilus oremlandii OhILAs] gi|158140720|gb|ABW19032.1| protein of unknown function DUF1078 domain protein [Alkaliphilus oremlandii OhILAs] Length = 448 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 31/478 (6%), Positives = 108/478 (22%), Gaps = 30/478 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + R+ Sbjct: 1 MMRSMYSAVSSLKAHQLKMDVIGNNIANVNTVGFKGTRVTFQEVFSQTLRGAGRA----- 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + + + S Sbjct: 56 --QEGGRGGTNPQQVGLGINVNSMDTFHTRGSVESTGYNTDLMINGEGFFVVSDTQGGLQ 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T + + A ++ + ++ + ++ Sbjct: 114 KSYTRAGAFGLDANGNLITPDGYYVLGYTAVRDADGQVQKNEKGQPIFEENLTGLRISRD 173 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + +L + F++ + Sbjct: 174 ETAPPAATTKATFTGNIDSNLSADSTGTAGDGGIHETVMKVHDSLGNAHTVKVQFQRTDQ 233 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + I ++ + + + Sbjct: 234 GNDTKRTFAVTI---------------------TELDNVKLGAPIPLEPATPLTFDSAGI 272 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + ++ + + Sbjct: 273 LDKTALTKGTLKLGHATDGLDGAKQLSIELDFTKLTSYAADKGAKSDAAALEINGYASGK 332 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ ++ ++ + + +A LL+ N + E + S Sbjct: 333 IDDFTISTTGEIEANFTNGSRQILGRVGLANFKNPAGLLKTGGNM--YRETSNSGEVMFG 390 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ V++ E + +I ++ + ++++I +D+MLQ ++ + Sbjct: 391 YAGTGGFGALNPGAIEMSNVDISREFTDMITTQRGFQANSRIITTSDEMLQEIVNMKR 448 >gi|330826761|ref|YP_004390064.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans K601] gi|329312133|gb|AEB86548.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans K601] Length = 660 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 123/412 (29%), Gaps = 14/412 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N Y R+ V V T Sbjct: 2 SLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGSGYIGNGVNVAT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + A + + + + + + I+ + +SL Sbjct: 62 ILRNHNELLTRQAAAAQAVQSGDSVRAERLSQLQDVFQ--GSTSGLGAAITDMLNSLADV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + E+ +SA ++Q+I+ ++++ + + + + S + N Sbjct: 120 VASPNDITARTVTLTRMNEMAARMRSSAEQLQEIQYSVTEQLKNDATRINQLASGIAEAN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LD+RD L++++++ I + I ++ + V+ L Sbjct: 180 EQIARVRGNGQSPNDLLDKRDQLIRELNQYIQTTQIPADDGSVGVFVGGSQALVLGSTAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + S + + G + + G++ LL+ ++ + +N L Sbjct: 240 SVSVDESQLFPGSGQMRLLFNRPGATPVELEEGMLGGGEVAGLLRFVNNDLAEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA + + + + + PG + + +I + + +P+ Sbjct: 300 MALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFA 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + D N T Sbjct: 360 ASDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAG 411 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 36/368 (9%), Positives = 104/368 (28%), Gaps = 11/368 (2%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + + + + ++ VQ + + + ++ Sbjct: 301 ALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFAA 360 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + ++F T D + ++++ G + + LF+ Sbjct: 361 SDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAGERVLFKPFA 420 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + ++ + ++N +A LQ+ + L Sbjct: 421 SA----------AANIQSLVYSPRDLAAANPVNAAMGTSNTGTLQLAELKAEGPTLTLPP 470 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + I P + ++ + + + Sbjct: 471 DGDTANTPPAFPGGIQLQFHAGPPATFDVVNQGAAPPTTVATGQSYTPGQPIQIDGWSIT 530 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWL 411 G+ V N + ++ N + + + TL + + + Sbjct: 531 LQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDESTLSDGYAGLMAQV 590 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + +++ S + GVNL EE + LI+ +Q+Y S K++ + Sbjct: 591 GTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNI 650 Query: 472 LQTLLEGV 479 L++ + Sbjct: 651 FDNLIQSM 658 >gi|88858143|ref|ZP_01132785.1| flagellar hook protein [Pseudoalteromonas tunicata D2] gi|88819760|gb|EAR29573.1| flagellar hook protein [Pseudoalteromonas tunicata D2] Length = 492 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 53/496 (10%), Positives = 117/496 (23%), Gaps = 29/496 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 FN A + A + NI N + + +N V Sbjct: 2 SFNIALSGLKAAQKDLDVTANNIANVNTYGFKESRAEFADVFSTSLFSNAKTQNGEGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L S+A+ F + + D + ++ Sbjct: 62 QVVAQQFHQGSLLFTSNALDMAINGNGFFVTTDSPLSRDFT----YTRSGAFKLDADNRL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 D L ++ V ++ +Q + + S ++ Sbjct: 118 VTAGGDFLQGLPVNEDGSVKSVSLSTTAPIQIPDSAGSPSATGAVDMSFNLDSNAKALDP 177 Query: 176 ----AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF--- 228 + T + + D + ++ N V S L Sbjct: 178 YKFNPLDTTTYTASTSTVIYDSLGNSRIASFYYVKVADPTTTNAAATVPGSGFDALPADP 237 Query: 229 ---ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + F + + + D + + G ++ Sbjct: 238 NDATNANSWVMFSTVTDDAGVQKKVDLGNDLLSGGAPDARTFSTGDPVGDPTSHTGMLLQ 297 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG---IKDLDNKLCQGISETICVNP 342 F + +A +E N P + Q + + Sbjct: 298 FDSSGSPVASTFPVPKTEPLGTPLNVTITPPPTAPYDGASVVTNGANPDQQFNINMSNLT 357 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q+ S ++ G + Y + + +A L + Sbjct: 358 QFSSAFEITALSQDGQTVGRLTGISIGGDGLIEAKYSNGDAQAISKVALARFPNEQGLTQ 417 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 W S F I VNL EL LI ++++ ++ Sbjct: 418 IGN--TSWTPSRESGEALAGEPDSGTFGSIRSGTLEQANVNLTGELVDLIAAQRNFQANS 475 Query: 463 KLIMFTDKMLQTLLEG 478 + + +++ Q +L+ Sbjct: 476 RALEVNNQISQNILQI 491 >gi|119953082|ref|YP_945291.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] gi|119861853|gb|AAX17621.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] Length = 442 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 49/490 (10%), Positives = 120/490 (24%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + NNS Sbjct: 61 GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 N + + + + + Q NTSA + DKE ++ Sbjct: 121 DSNRCLVNPANGMRIQGWMAKSIGGEQVINTSADVEDLVIPIGDKESAKATEHI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++++ + + ++ N + + T++ E Sbjct: 175 ----------------TFACNLDKRLPIIEEGASEVDVARGTWVVNKTIYDSFGNTSVVE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ T + + ++G S+ +G + +L Sbjct: 219 LR------VVKDTTTPNLWNATVLVNGETNSNFTIGFNNEGALLSLN------------- 259 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 G + V G + N + Q+ + Sbjct: 260 ------GQAGQPGDLLEFPITFGVVNANAGEVGEQQTINLRLGNVGSYTDSITQFADAST 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGIIMGVYSNGIRRDIGKIALASFVNPGGLAKVGDTNFS 373 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 374 --ETSNSGQARIGETGLAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|167034937|ref|YP_001670168.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1] gi|166861425|gb|ABY99832.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1] Length = 680 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 55/404 (13%), Positives = 144/404 (35%), Gaps = 15/404 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ + + + + + NI NA Y R+ T+ T+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTIQAAGASHNIGAGFLGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L +S Q + + AD + + ++ +L+ Sbjct: 61 ADVRRIYSSYLDNQLQTATSLQADSVAFQDQITSIDKLLAD--RDTGISSVLTAFFSALQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ A+ + FN + ++ + A + +++ + + + + Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTASIAE 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I + + + + LD R +++++E++G++ R + + VY G +L Sbjct: 179 YNKQIAAASGTGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGNK 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + I+ SS+ S V G I LL+ R V+ N+L Sbjct: 238 ANTLSVEPGAADKSQA--SLRINYESFSSDVTSVVTGGAIGGLLRYRQDVLTPSMNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ S + + ++ G + I + ++ + + + + Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATALAQRSLASSNNSSGSGNLDVTIAN 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 G + + + Y + D + + +P I+ Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNANPAPVIDG 399 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 68/256 (26%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G+ + + N + + + G AL+Q Sbjct: 425 GSITTTLTDANKLAFAGPISATSGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + D + G + + L + + Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGTDNKLSIAVPMLDAAGNPIKDASGN 544 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 R+ GGS + + + A + G + Sbjct: 545 PRTFSVETTIGGSPAANDSFTLSFNADGKADNRNATALLGLQTKSTVNTGSGGGTSFTSA 604 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ V SES S GVNL +E + L+K + Y S++ Sbjct: 605 YASLVERVGAKANQATIDTTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664 Query: 464 LIMFTDKMLQTLLEGV 479 +I + TL+ + Sbjct: 665 IIKAAQETFSTLINAL 680 >gi|71906397|ref|YP_283984.1| flagellar hook-associated protein FlgK [Dechloromonas aromatica RCB] gi|71846018|gb|AAZ45514.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 683 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 55/437 (12%), Positives = 144/437 (32%), Gaps = 23/437 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + A N A + NI N + + Y R+ + + + V Sbjct: 1 MSGLISIAVTGINAAQAGLLTTTNNISNLNTEGYTRQRVVQASNPTVMTGAGGFGQGAHV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT ++ + + + +L + M AD+ T I D ++ Sbjct: 61 VTVERMYSEALNRQVLNAQAKVSSLDTYYGQVSLIDNMLADEKA--GLTPAIQSFFDGIQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S ++++ A+ +V +F + + ++ + + +I + ++ + ++ Sbjct: 119 AVATNPSSTSARQSMVSAADSMVSSFRSMYSRLDELESGVNSQITSVVKSINSYTGQIAD 178 Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I ++ + +D LD+RD L+ +++++ + T ++ V+ G L Sbjct: 179 LNQKIVSSSSLNGQPVNDLLDKRDQLVADLNKLVKVDTSKNDDGSYNVFVGTGQQLVVGS 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ + + + + S + G++ LL R + NQL Sbjct: 239 RATSMAAVGSAADKSRIVVGLVGETGDIQELPESLISGGELGGLLSFRREALDTAFNQLG 298 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 MA + +F+ ++ + + + T+ + + Sbjct: 299 LMAASVSKTFNAQNALGQDLLGNT----------ASSSSFIKDFFTLSDPTAVANTKNAS 348 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 VS N + +N + + + ++ N T + ++ Sbjct: 349 TSTAVVSVTLNGASYNGTNFYTKLNASDYQLSYDGTNYALKRLSDNTTWTGASPAAVSAT 408 Query: 412 EKNRSDSHDLHMKSQVV 428 D Sbjct: 409 ADQGFSLTDNGGTYAAG 425 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 42/455 (9%), Positives = 108/455 (23%), Gaps = 22/455 (4%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSS-AIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 +V S +G + L E + + + Sbjct: 228 VGTGQQLVVGSRATSMAAVGSAADKSRIVVGLVGETGDIQELPESLISGGELGGLLSFRR 287 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR-------EVQKIRADADKEIE 157 L + + + + + S+ + A A+ + Sbjct: 288 EALDTAFNQLGLMAASVSKTFNAQNALGQDLLGNTASSSSFIKDFFTLSDPTAVANTKNA 347 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS------TIV 211 + + N + + D D + L+++S+ + Sbjct: 348 STSTAVVSVTLNGASYNGTNFYTKLNASDYQLSYDGTNYALKRLSDNTTWTGASPAAVSA 407 Query: 212 RNNNDMVVYTSDGT-------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 + + + GT + T + F S + Sbjct: 408 TADQGFSLTDNGGTYAAGDRFLIQPTRDQARLFSVDTSVAADPRLVAAATPVRASAGVAN 467 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS-EKDPIAGNSENVPGLFIADGI 323 S ++ P+ L S P+ + I Sbjct: 468 SGTAAVSNVSVGPNYVIPTPVASFSLGLTYSSTTTPPSLSGFPVGTTVTVQGATPSSFTI 527 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + I ++ S + +A + + Sbjct: 528 AATTDPVTYKSGAKITISAPVASGLPNGISLVLSGIPNGGDTFTIATNTSGVEDGSNIVR 587 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + N T + + + + + + + + + + GVN Sbjct: 588 LGSLQTQNTMLGGNATYQDNYASFVNDIGNKTASAEVSSEAQTTMLTQATAAKESLSGVN 647 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE + L++ +Q+Y + K++ K+ TL+ Sbjct: 648 RDEEAAKLVEYQQAYQAAAKVLEIAGKLFDTLISI 682 >gi|163738039|ref|ZP_02145455.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] gi|161388655|gb|EDQ13008.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] Length = 440 Score = 137 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 51/489 (10%), Positives = 132/489 (26%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + + ASI NI NA Y R T + S + Sbjct: 8 MTISSSLNAGVAGLSANASRLASISDNIANASTPGYKRVQTDFHSMVMSSSGGAYSAGGV 67 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111 R+ N + D+ L S+A + + + + N + R + Sbjct: 68 RTTNVRLIDERGPLVTTSNATDLAVRGRGMLPVASINEVETGATNPQMMLTTTASFRTNA 127 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S +L + + ++ ++ +R + +K + + ++ Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDALEPVRFNVNKLSGEPTTEMSLGVNLPA 187 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ T+ + + +I + + +N ++ T Sbjct: 188 TATESTSAGTSENLSIEYYDNLGKSESLQIEFVPTVPGTGESNEWTMIIT---------- 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + G + + G + A+ + Sbjct: 238 ---------------DTATGGTPIGEYTLTFDDNRTSGGALNAVTATTGGAYAPATGSII 282 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G Q + Sbjct: 283 VTVAGGPMEIN-----------------------------IGTLGDDNGLTQLSDTFAPA 313 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + +Y ++ P+ + ++ R ++ Sbjct: 314 SISKDGAPVGNFTGVEIDEAGFVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 371 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S S+ L + I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 372 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 431 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 432 LQETTNIKR 440 >gi|291558291|emb|CBL35408.1| flagellar hook-associated protein FlgK [Eubacterium siraeum V10Sc8a] Length = 503 Score = 137 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 59/503 (11%), Positives = 152/503 (30%), Gaps = 46/503 (9%) Query: 17 ASQQFASIVRNIENADNKNYVRRD------------------TMTTISPENVTVVTQRSE 58 A + N+ N D Y R+ +S + V Sbjct: 2 AQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGLSSQGVFASGVSQT 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTHYISKLRDSLESYS 115 + DK +S + + S + E +D + N + + + +L Y+ Sbjct: 62 RDDYLDKRYRDNSCYVSEYNQQASIMSEIETALTNFSDTYENVGMAYQFDQFKSALRKYA 121 Query: 116 KNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 ++ ++ + L V + A + + F + +++ + ++ + + R + E+ N Sbjct: 122 EDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLHSTLEDANRIIEEIVEYN 181 Query: 175 DAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 I + ++ LD R+ L+ ++SE I + + + Sbjct: 182 KQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDIHVDDNFDGSVKI- 240 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T G T+ + ++ + ++ + ++ + G IKA + + Sbjct: 241 TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVLESGSIKAYTDMIN 300 Query: 281 SVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 K ++ G D + + Sbjct: 301 GNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGDESDDRLMFTSADGSPINAG 360 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 I ++ + + + + + NL G + + Sbjct: 361 NIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLLGMDDSVQIGKGDY 415 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 + ++ L +N + + +S +GV+ EE ++ + Sbjct: 416 EGSSYDFILFLNNRLAQNIEFAEKQCDMYTETATSLLDSRDAIMGVSETEEGVNMLNYSK 475 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 +N S++++ D+ L T++E + Sbjct: 476 WFNASSRMLTTLDEALDTIIEKM 498 >gi|257095353|ref|YP_003168994.1| flagellar hook-associated protein FlgK [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047877|gb|ACV37065.1| flagellar hook-associated protein FlgK [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 681 Score = 137 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 48/449 (10%), Positives = 132/449 (29%), Gaps = 18/449 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + N A + NI NA + R+ T+ + + V Sbjct: 3 TGMIGSSLTGINAAQLGLQTTEHNIANASTPGFSRQRTVQASNPGVQSGAGFIGQGTHVA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T ++ ++ + + A + M AD + + + ++ Sbjct: 63 TIERMYSRFLSDQVNRSQASASELASYSAQIAQIDNMLADT--STGLSPALQGFFKGVQQ 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ + +I +A+ + + ++ ++ D E+ ++ + + ++ + Sbjct: 121 VAANPTDLPSRQAMISSAQALSGRYQALGVQLAQMYDGVDAEVAASVTAINSYAEQIASL 180 Query: 174 NDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N+ I ++ +D LD RD L+ +++++ +T V ++ ++ V+ G L Sbjct: 181 NERIGVAAASTGQPPNDLLDTRDRLVLDLNKLVKATTTVSSDGNLNVFIGSGQQLVVGSQ 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + V + G + LL R + N+L Sbjct: 241 FTALTTTPSASDRSRLVVALKT-AIGVQEMPERLINGGSLGGLLAFRRESLDKVSNELGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A L +F+ + + + L + +P+ Sbjct: 300 NAASLALTFNAQSALGQDLLGQSQLSSSPSSFT-PAFFSLPAPTVFANATNPAGSPTLTA 358 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 +L ++ + D + L + + Sbjct: 359 AFVDPPPYSGNFYTDLGSSDYRLSGDAAGVTLTRLSDNK--VWAGADLAAINAALVTDPQ 416 Query: 413 KNRSDSHDLHMKSQVVFNH-ISESYSNTV 440 + + + N Sbjct: 417 GFTLTASLGDLTGSSYLIQPTRNAALNIS 445 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 52/466 (11%), Positives = 114/466 (24%), Gaps = 24/466 (5%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ------RLLQSFEALKEMM 90 T+++ NV + + + L SA + + + + E + Sbjct: 214 KATTTVSSDGNLNVFIGSGQQLVVGSQFTALTTTPSASDRSRLVVALKTAIGVQEMPERL 273 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 L +N + L + + + + Sbjct: 274 INGGSLGGLLAFRRESLDKVSNELGRNAASLALTFNAQSALGQDLLGQSQLSSSPSSFTP 333 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + + A + + L D L + + ++ + Sbjct: 334 AFFSLPAPTVFANATNPAGSPTLTAAFVDPPPYSGNFYTDLGSSDYRLSGDAAGVTLTRL 393 Query: 211 VRNNNDMVVYTS--DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N + + + + + + + P + +S N Sbjct: 394 SDNKVWAGADLAAINAALVTDPQGFTLTASLGDLTGSSYLIQPTRNAALNISVNPAVVAD 453 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN----VPGLFIADGIK 324 I A +R SV A + + P+A L Sbjct: 454 ARLIAAGGPVRTSVGKGNSGAAVISAGSVGPGYPGAVPLATGPITLRFQDGKLLDFPAGA 513 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + + L D VS ++G P+ + + S N Sbjct: 514 QVSINGGVPAAVPVAGLDYRSGDSITLVDPAVVSTPPAGFSFTISGLPNNGDTFVISRNT 573 Query: 385 NFIFDP------------VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 D T + + Q + Sbjct: 574 GGTADSRNALALGQLQVQNTMSGKTATYQDAYAQLVSQTGSKTRQIQVSGEAQQALLEQA 633 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S + VNL EE + LI+ +Q+Y S K + + +T+L+ Sbjct: 634 QASRDSLSAVNLDEEAANLIRYQQAYQASAKALQIGANLFETILQL 679 >gi|83595982|gb|ABC25342.1| flagellar hook protein [uncultured marine bacterium Ant24C4] Length = 437 Score = 137 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 51/489 (10%), Positives = 130/489 (26%), Gaps = 61/489 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55 M++ + N + + + A+I NI N+ Y R T T Sbjct: 1 MTISSSLNAGVAGLSANATRLATISDNIANSSTFGYKRAVTDFQSLVIENSNSKYTAGGV 60 Query: 56 RSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111 R+ + D L + ++ + + S + R Sbjct: 61 RTTTTRLIDERGSLVSTTNPTDLAVRGRGLLPVTSEASVQVANGDHPLLLTTTGSFRPDE 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y ++ S +L + + N S ++ I+ ++++ + + Sbjct: 121 DGYLRSPSGLVLMGWAANADGTIPTNPRDSVDGLEPIKINSNQFAGEPTTEVN----LAV 176 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + ++ D ++ D L + + ++ + V Sbjct: 177 NLPATSTEAGSATGDETLSIEYFDNLGKSANLLMTFTPT--------------------V 216 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + S + +S + S G + + +P + Sbjct: 217 PATGTANEWQLQIADSAGGGAVVGSYQLSFDP-SRAGGGTLLGVTDNLGVGLPTEYDPAT 275 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + I + Q + Sbjct: 276 GSVTLNVDGGPLELAIGT-------------------------LGSATGLTQLSDTFAPT 310 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + S ++ + + N+ P+ ++ L + + Sbjct: 311 SISKNGSAVGSLTAIDVDVNGFVRASFDSGINRVLYQVPLVDVSNVNGLESLDQQ--SYR 368 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + L + ++ EL+ LI+ +++Y+ + K+I D+M Sbjct: 369 VSPDSGTFFLWDAGDGPTGDVVSFAREESSTDVAGELTQLIQTQRAYSSNAKVIQTVDEM 428 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 429 LQETTNIKR 437 >gi|56460246|ref|YP_155527.1| flagellar hook-associated protein [Idiomarina loihiensis L2TR] gi|56179256|gb|AAV81978.1| Flagellar hook-associated protein [Idiomarina loihiensis L2TR] Length = 671 Score = 137 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 139/441 (31%), Gaps = 14/441 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-TTISPENVTVVTQRSEN 59 MS + N +N Q + +NI N + +YVR T S + V Sbjct: 1 MS-FDLLNIGKNGILAHQQSLQTTGKNINNTNTDSYVRERTEYFESSYGGLERVRVERMI 59 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ L S + + + D + + ++L+ + + Sbjct: 60 DQFANRQLRTDISRVSYYEANLQQAEQLDTLLGD--STTNVASSVESFFNTLQDANNDPG 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + V+ A+ +V FN + + ++ + ++L + L +N I+ Sbjct: 118 SVTARQLVLAEADAMVTKFNDFSSYLNDQKSIINDRLKLSTDRINSISENLAELNSKIQS 177 Query: 180 K---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 ++ + + L++RD L++++E++ ST+ + N + V +G L R Sbjct: 178 SGGENSANGNINALLNKRDEQLRELAELVQFSTVEQKNGAIAVNLKNGQPLVLEDGRFNA 237 Query: 237 FEKMNSYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ + G + + G + L+ RD V+ Q +L ++ Sbjct: 238 VAVKSNPDTERLEMVLRKEHSGGSISEFYVPTDEVGGSVGGYLEYRDEVLMPTQKRLGQL 297 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + S + ++ + +N G I D K L + + Sbjct: 298 AIRIADSMNTQNQKGMDLDNQLGSKIFDLAKTESQALPYSDNGGTGEISVSVLEGNSKSF 357 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-E 412 +++ D + + T+ L Sbjct: 358 PSEN---LRITKTGNPDEYEIVPVNSDGTVVSGADTITVTQASPGTVDIVELGVSLDLSG 414 Query: 413 KNRSDSHDLHMKSQVVFNHIS 433 + L ++ + IS Sbjct: 415 AANAGDQFLAKPAEGAASEIS 435 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 45/399 (11%), Positives = 122/399 (30%), Gaps = 38/399 (9%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV----ND 175 +G + E ++ + +I + + + + + S++ + + Sbjct: 273 GGSVGGYLEYRDEVLMPTQKRLGQLAIRIADSMNTQNQKGMDLDNQLGSKIFDLAKTESQ 332 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT-SDGTTLFETVPRD 234 A+ + SE + I+ + +V SDGT + Sbjct: 333 ALPYSDNGGTGEISVSVLEGNSKSFPSENLRITKTGNPDEYEIVPVNSDGTVVSGADTIT 392 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP----------------KGKIKALLQI 278 + + + + + G + +Q A P + +++ Sbjct: 393 VTQASPGTVDIVELGVSLDLSGAANAGDQFLAKPAEGAASEISLAIRRPEDIALANPIRV 452 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 +D + ++ + + + + I + + Sbjct: 453 KDGLDNQGAASIEINSINTPDDYYDTANNTLLGSAPARIEITGQTGNAYDLEVFDKDGNS 512 Query: 339 CVNPQYRSNPSFLRDGGSVSKK---FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ++ + + ++ N + G +I + + F+ N +A + Sbjct: 513 IGTVTGTTDLNGILSQAGLADPDYEVDINGEPAVGDEYIIEYNTNGFDDNSNGQSMADLQ 572 Query: 396 --------------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 +T E + + S + L ++ + + Y + G Sbjct: 573 RQQLVRRSGGEEAEPTMTFNESYGRLVSDVGSRVSQNRVLRDSAEAIRSQTEALYESQAG 632 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VNL+EE + LI+ +Q+Y S ++I + + +TLL ++ Sbjct: 633 VNLEEEAANLIQYQQAYTASARIITTSQAIFETLLTSLR 671 >gi|27363699|ref|NP_759227.1| flagellar hook-associated protein FlgK [Vibrio vulnificus CMCP6] gi|27359815|gb|AAO08754.1| flagellar hook-associated protein FlgK [Vibrio vulnificus CMCP6] Length = 638 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 57/448 (12%), Positives = 145/448 (32%), Gaps = 18/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + +++ + M + +++ D+L++ Sbjct: 63 NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKK-IPENLNEWFDALKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K +++ A + + N +++ +K++++ I + + E+ + Sbjct: 122 LADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + +G + S GK+ A+L +RD+ +P ++L Sbjct: 239 ASQL-KMIDGYPDVHQRRLAIYEGKSLKP-IKSVGLDGKLGAMLDMRDNQIPYVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G I + + ++ + + L Sbjct: 297 MAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS-QAEVAVFINDLA 355 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ N S + + G+ V A I Sbjct: 356 SLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILLRP 415 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 S + + ++T Sbjct: 416 TRNSAAQMQVATNDASMIAAQSYEASTS 443 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 34/354 (9%), Positives = 101/354 (28%), Gaps = 17/354 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + + + + + + + I + +A R V Sbjct: 284 DNQIPYVMDELGRMAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS 343 Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-TSESNPIFIDG 256 + + + + Y T+ + ++ ++ + + + + Sbjct: 344 QAEVAVFINDLASLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRN 403 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS----- 311 + + P A +Q+ + + Q E + ++ + +A Sbjct: 404 EPKAGEKILLRPTRNSAAQMQVATNDASMIAAQSYEASTSFAQGTAQFNILAAGDLREFE 463 Query: 312 -------ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + ++ + + S ++ N Sbjct: 464 VIVSPQGDQFAVIDTKGNVVRSPEPYPPKGPVSVTLPSSHPSYKEGKETVFELTAGAWAN 523 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 K A + I T+++ N + S + L Sbjct: 524 DKFTANLVPSEGDNGNLRKMQQIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANI 583 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +Q E ++ GVNL EE + +++ +Q+Y S++++ + T+L+ Sbjct: 584 AQHENEAAQERIASISGVNLDEEAANMMRFQQAYMASSRIMQAANDTFNTILQL 637 >gi|319764545|ref|YP_004128482.1| flagellar hook-associated protein flgk [Alicycliphilus denitrificans BC] gi|317119106|gb|ADV01595.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans BC] Length = 660 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 123/412 (29%), Gaps = 14/412 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N Y R+ V V T Sbjct: 2 SLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGSGYIGNGVNVAT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + A + + + + + + I+ + +SL Sbjct: 62 ILRNHNELLTRQAAAAQAVQAGDSVRAERLSQLQDVFQ--GGTSGLGAAITDMLNSLADV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + E+ +SA ++Q+I+ ++++ + + + + S + N Sbjct: 120 VASPNDITARTVTLTRMNEMAARMRSSAEQLQEIQYSVTEQLKNDATRINQLASGIAEAN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LD+RD L++++++ I + I ++ + V+ L Sbjct: 180 EQIARVRGNGQSPNDLLDKRDQLIRELNQYIQTTQIPADDGSVGVFVGGSQALVLGSTAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + S + + G + + G++ LL+ ++ + +N L Sbjct: 240 SVSVDESQLFPGSGQMRLLFNRPGATPVELEEGMLGGGEVAGLLRFVNNDLAEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA + + + + + PG + + +I + + +P+ Sbjct: 300 MALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFA 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + D N T Sbjct: 360 ASDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAG 411 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 36/368 (9%), Positives = 104/368 (28%), Gaps = 11/368 (2%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + + + + ++ VQ + + + ++ Sbjct: 301 ALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFAA 360 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + ++F T D + ++++ G + + LF+ Sbjct: 361 SDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAGERVLFKPFA 420 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + ++ + ++N +A LQ+ + L Sbjct: 421 SA----------AANIQSLVYSPRDLAAANPVNAAMGTSNTGTLQLAELKAEGPTLTLPP 470 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + I P + ++ + + + Sbjct: 471 DGDTANTPPAFPGGIQLQFHAGPPATFDVVNQGAAPPTTVATGQSYTPGQPIQIDGWSIT 530 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWL 411 G+ V N + ++ N + + + TL + + + Sbjct: 531 LQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDESTLSDGYAGLMAQV 590 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + +++ S + GVNL EE + LI+ +Q+Y S K++ + Sbjct: 591 GTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNI 650 Query: 472 LQTLLEGV 479 L++ + Sbjct: 651 FDNLIQSM 658 >gi|332533169|ref|ZP_08409038.1| flagellar hook-associated protein FlgK [Pseudoalteromonas haloplanktis ANT/505] gi|332037451|gb|EGI73905.1| flagellar hook-associated protein FlgK [Pseudoalteromonas haloplanktis ANT/505] Length = 667 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 64/442 (14%), Positives = 147/442 (33%), Gaps = 7/442 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MS + N A + +S+ + +NI N + + YVR T T V Sbjct: 1 MS-FNLLNIASSGVRASSELLQTTSKNIANVNTEGYVRERTEFTTMVDNQVGRGETYRLL 59 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L+ +S + + + +++ +N+ + I+ L ++++ S Sbjct: 60 NEFAQSQLNRDTSNKSFFDQFITEANRVDTIFSEE--SNNLSTGINSLFNNVQEALNQPS 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178 + V+ +A+ ++ + + V ++ ++++E+ + ++ +N I Sbjct: 118 STVARSLVMTDAQSLIDQMDRLSGIVLDQKSIVNEQLEIFSDEANSLIQSISTLNQNIAA 177 Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T + DA ++RD ++ +SE+I I T+ N + +V+ G + F Sbjct: 178 VNGTNNAADASSTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGTGEAVVMQNGAFNLF 237 Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + ++G V + KGKI LL RD ++ QNQ+ +M Sbjct: 238 SMTGDPDPNFKEFTLDVNGGKAVPLEVDVSKLKGKIGGLLAFRDDILVPAQNQIGQMGLA 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + +F+E++ + ++ G I + S L Sbjct: 298 IADAFNEQNKLGMDATGQLGGNIFNIPTVGAYAYQANTGTAGMTATVEPGKGSELPASDF 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + D + I V +T + ++ Sbjct: 358 IITYTGNANEVSIQPIDNKGDPLGQPSLADISTGVIDSSTTTGESFGLQVNVSGAGVEGD 417 Query: 417 DSHDLHMKSQVVFNHISESYSN 438 ++ + Sbjct: 418 QFQIKLNSDAASSITLATGRAE 439 Score = 91.2 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 35/373 (9%), Positives = 93/373 (24%), Gaps = 15/373 (4%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 D+ N+ A + + A I N Sbjct: 310 MDATGQLGGNIFNIPTVGAYAYQANTGTAGMTATVEPGKGSELPASDFIITYTGNANEVS 369 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + + + + +D + + +S + + + Sbjct: 370 IQPIDNKGDPLGQPSLADISTGVIDSSTTTGESFGLQVNVSGAGVEGDQFQIKLNSDAAS 429 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 T+ + + + + ++ I +S+ + ++V G + + + + Sbjct: 430 SITLATGRAEDLALASPIRTANDLNNIGTATISAGEVTSVTSGGFTSAPGLTNGEIT--- 486 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + D N + + L + + Sbjct: 487 ----LVKAAGTNDYLISDGNGTNVAVTIAPPGKNVLAGLGTPYDSYGFDFDIEGTPATGD 542 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L + + + + A + + T + Sbjct: 543 TFTLEFNEG--------GFDDNRNGLKLADLQNGELVRLNVETTATADNHKTFNQAYSGL 594 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + Y + GVNL EE + L++ +QSY+ S K++ Sbjct: 595 VSDIGVITGQAITSGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYSASAKVLAT 654 Query: 468 TDKMLQTLLEGVK 480 + TLL + Sbjct: 655 AQAIFDTLLNAAR 667 >gi|238919265|ref|YP_002932780.1| flagellar hook-associated protein FlgK, [Edwardsiella ictaluri 93-146] gi|238868834|gb|ACR68545.1| flagellar hook-associated protein FlgK, putative [Edwardsiella ictaluri 93-146] Length = 550 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 60/551 (10%), Positives = 142/551 (25%), Gaps = 77/551 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + A NI N Y R+ S VTV Sbjct: 1 MANLINNAMSGLSAAQTALGVTSNNINNVYTAGYNRQTVTLAESNGTSTPAGFIGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L + + + + AD NS + + K +L+ Sbjct: 61 SGIDRDYNQFIVNQLRQGQTQEAALSTYHQQISQIDDLMAD--STNSLSANMQKFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEV--------------------------------VQNFNT 140 + ++ +TVI NA + + Sbjct: 119 NLVSYPADSAARQTVISNANGLTAQFKSTDDYLRNLENGANLTVRNDAEQINDYAKQIAN 178 Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 + ++ + ++ + R ++ + + F ++ Sbjct: 179 LNNRITEMTGASGGTAPNDLLDQRDLMASNLNKIVNVDISMQDGAMSVSFAGGLSLVQGG 238 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN------------------- 241 + + + + + G L E I+ + Sbjct: 239 DAYSVKAIPSSNDPSHATLAYDRGNGLSEVPEARISGGTLAGVFRFRSEALENTRNQLGR 298 Query: 242 -SYTVTSESNPIFIDGVVVSSNQGSAVPK----GKIKALLQIRDSVVPIFQNQLDEMARV 296 + ++ + N + +GV ++ +G + + + + + +++ Sbjct: 299 IALSMANAFNHVQSEGVDLNGEKGKPLFSIGKPEALANTNNLSQAHLSATYDKVGADNIT 358 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRD 353 + + G + + L K + V ++ L Sbjct: 359 HAQATDYQLKYTGGDKWQIIHLADGTQQTLAAKGDVLAFNGLQVKVDGKPEVNDSFKLCT 418 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI------FDPVAGINTNVTLLEYARNS 407 +V F + + A D N + N TL Sbjct: 419 TSTVVSGFGVEISDPALLAAGSAKGKDDVGDNTNAQKMLDLQNQKIVGGNATLSGAYGGL 478 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + V ++ + GVNL EE L++ +Q Y + ++I Sbjct: 479 VSTIGNQTNSAKVDSKAEGNVVKQLTIQQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQS 538 Query: 468 TDKMLQTLLEG 478 + LL Sbjct: 539 AQSLFNALLNI 549 >gi|149911702|ref|ZP_01900310.1| flagellar hook protein FlgE [Moritella sp. PE36] gi|149805232|gb|EDM65249.1| flagellar hook protein FlgE [Moritella sp. PE36] Length = 435 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 55/483 (11%), Positives = 119/483 (24%), Gaps = 60/483 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + + NI N + + V Sbjct: 2 SFNIALSGINAAQKDLNTTANNIANVNTTGFKESRAEFGDVYATSIFSNAKTSVGNGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L+ +++ F + + + + D + S+ Sbjct: 62 SHIAQQFQQGSLNFTENSLDLAINGNGFFVMADGLESMDRN----YTRAGAFKLDANSFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + + L +++ S + +Q E + + +++ Sbjct: 118 TNSAGNYLQVYDVNDDGSPKAVSMASTKPLQIPDTAGVPESTGNVDMTMNLPATSPLLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D + + I + ++ + Y T + Sbjct: 178 -------------TKFDPVDSGTYTAATSVSIYDSLGESHTLSTYYVKDGTAGAPANSWL 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 F ++ V + LLQ + V+ + Sbjct: 225 EFNYVDDQPVDIVGGQAVASAPGTPVKPAALQLTFDSSGLLQQQLPVIAETVPLGAILTN 284 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 Q I I Q+ S + Sbjct: 285 G-------------------------------ADTSQTIKVNINNPTQFASAFEVSKLEQ 313 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + N +A L + GW Sbjct: 314 DGATVGRLTGIDIGPDGMVLASYSNGRNDKLGMIAMAKFANEQGLSQTGD--TGWRASQL 371 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F I+ S VNL EL LI +++Y +++ + K+ T+ Sbjct: 372 SGAAIAGEANSGTFGKINSSALEQSNVNLTSELVNLITAQRNYQANSRTLEVNSKLQDTV 431 Query: 476 LEG 478 L+ Sbjct: 432 LQI 434 >gi|224532235|ref|ZP_03672867.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] gi|224511700|gb|EEF82106.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] Length = 442 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDTRG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 A + N Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDVEDLIIPIGDKEGARSTKNV------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++Q+ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + L N Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALATL------------NG 260 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + N V + Q+ + S Sbjct: 261 QPSQKGDILQIPITFNVSGANVGEVGEQQTVNLKLGTVGSYT-------DSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|190574257|ref|YP_001972102.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia K279a] gi|190012179|emb|CAQ45802.1| putative flagellar hook-associated protein [Stenotrophomonas maltophilia K279a] Length = 626 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 133/449 (29%), Gaps = 16/449 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52 + +V + + A+ N+ N + Y R+ + Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTVGNGTRI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L S + + + L + +D + + SK DS+ Sbjct: 61 TDIRRTADQLAISRLLDSSGELARLKQLSGMADRVNSLFSD--AATNVSGVWSKFFDSVS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S N + + ++D + + F + + ++ + + + + R E+ Sbjct: 119 GLSSNAAGTADRQNMLDGGKALANRFVQLNTHLNNLNSEVNNGLLAGATEVNRLAQEIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N AI T A D LD+RD L+ ++ G + ++++ M VYT+ G L Sbjct: 179 INGAI--GTNIATAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y + G + + + G+I LL+ RD+V+ Q +L + Sbjct: 237 ATKVTTVADPYQPERLQVALETQGNTIRLDPKA--VGGQIGGLLEFRDTVLTPAQAELGK 294 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L SF++ + G + + Sbjct: 295 LAVGLAESFNQVHHQGVDLYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQ 354 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + W ++ + + + V + Sbjct: 355 NVVLQFDGTNWKASRADTGANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAG 414 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVG 441 S + S++ + + T Sbjct: 415 VAGSMEVAITDPSRIAAAAAVKGAAATSN 443 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 32/373 (8%), Positives = 98/373 (26%), Gaps = 5/373 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + ++ + +A+ K + + + Sbjct: 253 QVALETQGNTIRLDPKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAESFNQVHHQGVD 312 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + + + +S + + N + ++ Sbjct: 313 LYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQNVVLQFDGTNWKASRADT 372 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ + N + + + + + + ++ + Sbjct: 373 GANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAGVAGSMEVAITDPSRIAAA 432 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + PQ + + Sbjct: 433 AAVKGAAATSNTGTGKLSGVTVSDSTNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492 Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 G + + N+ P + ++ + + A + VTL Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASRLSKVESAKAFNSGTVTLNGALGGL 552 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + V+ + E+ GVNL EE + +++++Q+Y +++LI Sbjct: 553 TTQVGAAARSAEYSLEAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612 Query: 468 TDKMLQTLLEGVK 480 D M QT+L V+ Sbjct: 613 ADSMFQTILGAVR 625 >gi|291531969|emb|CBK97554.1| flagellar hook-associated protein FlgK [Eubacterium siraeum 70/3] Length = 503 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 59/503 (11%), Positives = 152/503 (30%), Gaps = 46/503 (9%) Query: 17 ASQQFASIVRNIENADNKNYVRRD------------------TMTTISPENVTVVTQRSE 58 A + N+ N D Y R+ +S + V Sbjct: 2 AQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGLSSQGVFASGVSQT 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTHYISKLRDSLESYS 115 + DK ++ + + S + E +D + N H + + +L Y+ Sbjct: 62 RDDYLDKRYRDNNCFVAEYNQQASIMSEIETALTNFSDTYENVGMAHQFDQFKSALRKYA 121 Query: 116 KNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 ++ ++ + L V + A + + F + +++ + ++ + + R + E+ N Sbjct: 122 EDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLLSTLEDANRIIEEIVEYN 181 Query: 175 DAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 I + ++ LD R+ L+ ++SE I + + + Sbjct: 182 KQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDIHVDDNFDGSVKI- 240 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T G T+ + ++ + ++ + ++ + G IKA + + Sbjct: 241 TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVLESGSIKAYTDMIN 300 Query: 281 SVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 K ++ G D + + Sbjct: 301 GNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGNESDDRLMFTSADGSPINAG 360 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 I ++ + + + + + NL G + + Sbjct: 361 NIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLLGMDDSVQIGKGDY 415 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 + ++ L +N + + +S +GV+ EE ++ + Sbjct: 416 EGSSYDFILFLNNRLAQNIEFAEKQCDMYTDTATSLLDSRDAIMGVSETEEGVNMLNYSK 475 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 +N S++++ D+ L T++E + Sbjct: 476 WFNASSRMLTTLDEALDTIIEKM 498 >gi|1184296|gb|AAA87351.1| flagellar hook protein [Borrelia burgdorferi] Length = 442 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 50/490 (10%), Positives = 116/490 (23%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTIMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFYV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R L+Q+ + I+ N + + ++ E Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + + I+G S+ +G + +L I Q Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + Q+ + S Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ Y + ++ +A L + Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|50120645|ref|YP_049812.1| flagellar hook-associated protein FlgK [Pectobacterium atrosepticum SCRI1043] gi|49611171|emb|CAG74617.1| flagellar hook-associated protein 1 [Pectobacterium atrosepticum SCRI1043] Length = 568 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 143/409 (34%), Gaps = 14/409 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + A +++ NI N Y R++ + + V V Sbjct: 1 MSNLINTAMSGLKGAQIALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + L A + + +E + ++ + S + I +L+ Sbjct: 61 VSINRQYNEFITNQLRASQTTS--SSVSTYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + +TV+ AE +V F + + ++ + + + +I+ + + + +++ Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQINTYTDQISS 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S +D LDQRD+L+ ++++++G+ V++ V +GT L + Sbjct: 179 LNNEIMKLMGANSGTMPNDLLDQRDLLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S + + V + S + G + LL R + + QL Sbjct: 239 GTSNQLVAVNSSSDPSRLTIGYKDQTNDVVTLNESTLTGGSLGGLLSFRSETLDEARGQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + + V G K + + + + Sbjct: 299 GQLALAFADAFNAQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNGGNAVLTPSYTDTKDVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + W V L+ + G+ +T Sbjct: 359 ATNYAIKYDGANWQVTRLSDNSKFTAAVTTAGTPPESSLSFDGVKMTIT 407 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 48/426 (11%), Positives = 128/426 (30%), Gaps = 15/426 (3%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114 + + + + + I S + M + P + + ++ Sbjct: 152 RDMDSGLNTQIQSTVGQINTYTDQISSLNNEIMKLMGANSGTMPNDLLDQRDLLVDQLNK 211 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + V + A + N + Q + ++ + + +++ +N Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNQLVAVNSSSDPSRLTIGYKDQTNDVVTLN 271 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 ++ + + D ++ ++ N Y +G + Sbjct: 272 ESTLTGGSLGGLLSFRSETLDEARGQLGQLALAFADAFNAQHQQGYDRNGVKGGDFFSFG 331 Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +S + P + D V + + G + ++ D+ Sbjct: 332 KAVVLNDSKNGGNAVLTPSYTDTKDVQATNYAIKYDGANWQVTRLSDNS----------- 380 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + P + S + + I DN L + +++ I S+P+ + Sbjct: 381 KFTAAVTTAGTPPESSLSFDGVKMTITGTPATNDNFLLKPVNDVIIDMAVAVSDPNKIAA 440 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-AGINTNVTLLEYARNSIGWLE 412 + + V ++ G P ++ K + + ++ + +G + Sbjct: 441 ASTKVDENGAPVLDVNGDPVFGGVSDNTNAKALLALQNEKIVGGKASVSGAYASLVGSIG 500 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + Q V ++ + GVNL EE L++ +Q Y + ++I + Sbjct: 501 NQASTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRFQQYYMANAQVIKTAQSIF 560 Query: 473 QTLLEG 478 LL Sbjct: 561 DALLAA 566 >gi|296283218|ref|ZP_06861216.1| flagellar hook-associated protein FlgK [Citromicrobium bathyomarinum JL354] Length = 698 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 52/411 (12%), Positives = 123/411 (29%), Gaps = 13/411 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQ 55 MSL + A + + + S+ NI N Y R + V + Sbjct: 1 MSLSNILGTAVSGLSASQAGIRSVSNNIANISTPGYARERVSLSTGVTQGRINGVVIGEP 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ ++ + +G+ + ++ + + + + S + + Sbjct: 61 TRIADRFLEQTVYLRAGDMGRAEVTANYMDRLQAFLGAPGAESGVPARLDAISASAIALT 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 S + ++ + + ++Q +R D + E+ I + L + +N Sbjct: 121 SGRSASQNASNFVAEVQDAIGSLRQLDDDIQVLRGDVESEVGYSIETVNDLLERIHGLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A DQR L+++S ++ IS + + + + +++G L + R + Sbjct: 181 TVAQLRGLGRSAGGAEDQRMSALEELSGMMKISIREQPDGRVNIDSANGAVLLDGRLRKL 240 Query: 236 NFEKMNSYTVTSES--------NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ N S+ GK+ LL +RD +P F Sbjct: 241 SYPSPGDGVAQPTYPVIDIRFTNEAGEPTTATGEKLDSSAIGGKLGGLLDLRDRALPEFS 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +Q+ + L + + L ++L T V + Sbjct: 301 DQIGSLFGGLAETLNSVSNSGTAVPPPNRLDGRPTGLIGGDRLGFTGQATFAVTDKSGIL 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + +A + ++ VA +N Sbjct: 361 VASTTVDFDALGPLATVDDAIAAINGGLAGNATVALQDGRLSFVATSGSNG 411 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 50/402 (12%), Positives = 114/402 (28%), Gaps = 15/402 (3%) Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 +++ L ++L S S + + + ++ Sbjct: 297 PEFSDQIGSLFGGLAETLNSVSNSGTAVPPPNRLDGRPTGLIGGDRLGFTGQATFAVTDK 356 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I + + + D + + +D L ++ V Sbjct: 357 SGILVASTTVDFDALGPLATVDDAIAAINGGLAGNATVALQDGRLSFVATSGSNGVAVAQ 416 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + +G + + + + E ++ G S+ G+ Sbjct: 417 GDPPSARAGNGFSHYFGLNDVVRSESATLVAPGFVASDPHGFGAGQSAQLVLRDATGRSL 476 Query: 274 ALLQIRDSVVPIFQN---QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 A + +V P + +L + GSF+ D + PG A D+ Sbjct: 477 ATTTLTGTVGPTMGDLVTELGQSPLAKFGSFALDDRGRISFTPTPGASGALLSIPTDSTD 536 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN------------VKNLAGYPDLINHY 378 G + + S L G S Sbjct: 537 RFGTGVSFTALSGLTGSASGLNKAGVRSDVLASADRLPLSRLRTDAAVGEPALGGGDTRV 596 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + G + T+ ++ +G + + D+ + + + + Sbjct: 597 AGALVEALGKPIDFGKAGSATIERFSSLLMGRAGTQAARAQDMLVDAAARRDDAINRRDS 656 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVNL EELS ++ ++ SY+ + +++ +M TLL+ V+ Sbjct: 657 FSGVNLDEELSQMVVLQNSYSAAARVMTTATQMYDTLLDMVR 698 >gi|187918157|ref|YP_001883720.1| flagellar hook protein FlgE [Borrelia hermsii DAH] gi|119861005|gb|AAX16800.1| flagellar hook protein FlgE [Borrelia hermsii DAH] Length = 442 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 48/490 (9%), Positives = 120/490 (24%), Gaps = 62/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + NNS Sbjct: 61 GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + + Q NTSA + DKE + Sbjct: 121 DSDRRLVNPANGMKIQGWMAKSIGGEQVINTSADVEDLVIPIGDKEGAKSTEYI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++++ + + I+ N + + T++ E Sbjct: 175 ----------------TFACNLDKRLPIVEEGASEVDIARGTWVVNKTIYDSFGNTSVVE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ T + + + ++G S+ +G + +L V + + Sbjct: 219 LR------VVKDATTPNTWNATVLVNGEANSNFTMGFNNEGALLSLNGQAGQVGDLLEFP 272 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + G + + D + Sbjct: 273 ITFDVVNANAGEVGEQQTVNLRLGNVGSYTDSITQFADASTTK----------------- 315 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + Y + ++ +A L + + Sbjct: 316 --AIVQDGYGMGYMENYEIDQNGVITGVYSNGIRRDIGKIALASFVNPGGLAKAGDTNFS 373 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 374 --ETSNSGQARIGETGFAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 432 QLLQELVRLK 441 >gi|322432968|ref|YP_004210217.1| flagellar hook-associated protein FlgK [Acidobacterium sp. MP5ACTX9] gi|321165195|gb|ADW70899.1| flagellar hook-associated protein FlgK [Acidobacterium sp. MP5ACTX9] Length = 457 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 67/488 (13%), Positives = 155/488 (31%), Gaps = 46/488 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 SL++ N A + + NI NA Y R V Sbjct: 3 SLMSTLNTASEALMAQEAEISVTNNNIANASTAGYTRETVSLQEAAPTSQGALSVGNGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V S + + +S G + + + S +S SL Sbjct: 63 VAGITSVRNELLTSRIQQQTSEQGSSDAQVTALTQIQTLF--PSTGTSLASSLSGFFTSL 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S N ++ +TV+ +A+ +VQ FN+ + + + + ++ +++ + SE Sbjct: 121 SALSSNPTDAANRQTVLSSAQTLVQQFNSVSAGLSGPASSLNTTVKTDVAQINELSSEAA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I ++A+ + DQ + +++ + IS D + + + Sbjct: 181 SLNQQITSQSATGQSSGTLTDQLGQVETQLASLTNISVTHGTGGDTITTGNGTPLVLAGQ 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + ++ SA+ G + +QIRD+V+P Q LD Sbjct: 241 SHALQTSTGSDGNTHIL--------DSSGTDITSAISSGDLGGTIQIRDTVLPGLQTSLD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A +F+ G + + Sbjct: 293 TLANQFATAFNSAQASGYTQNGTAGAALFSIPTTVAGS---------------------- 330 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + N + + + + ++ + N + + Sbjct: 331 ----AAAISLTTTDPTAIAASSDGSSGSSGNVANLVALQNSALPSGQSVTTGSANLVYQI 386 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S++ + + ++ S+ GV++ EE + LI+ +Q+Y + K++ + Sbjct: 387 GNLTSNATTQQSSISLSLSSLTTQQSSVSGVSIDEESANLIRYQQAYEAAAKVVSTISTL 446 Query: 472 LQTLLEGV 479 T + + Sbjct: 447 FDTTINMI 454 >gi|114569242|ref|YP_755922.1| flagellar hook-associated protein FlgK [Maricaulis maris MCS10] gi|114339704|gb|ABI64984.1| flagellar hook-associated protein FlgK [Maricaulis maris MCS10] Length = 713 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 54/413 (13%), Positives = 130/413 (31%), Gaps = 7/413 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + A + + + N+ N + Y R V V Sbjct: 1 MSLSGILGNALSGLQASQAGLRASSNNVANVNTPGYARTIASVEARNVGGVAMGVQVNGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 S + + + + + S ++ L S Sbjct: 61 VRIVDRHLQLTSLRSISDASVTQTNATALDRLQSQFGNLDDSGSIFARLNASFTGLSQAS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + + + + E++ R +AD +I + L EL +N Sbjct: 121 VDPTLSVARLSAAADLDSFFTEAERLSGEIRTQRQEADSQINATLQRSNEILRELFDLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 +++ +S D+ ++ LL ++S+ + + + N +V+ T+DG L + P ++ Sbjct: 181 SVQSVASSGGDSSGAENRVSELLDELSQHMDVRADFQGNGRVVLRTTDGVLLLDNYPANL 240 Query: 236 NFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ S + E I+ + S + G ++AL+ +RD +P +L EM Sbjct: 241 TYKVSGSGSYGVEYGKIYAESPNGGNPQELDSHITSGSLRALIDLRDHTLPDVAEELAEM 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + L + + + + T+ V + Sbjct: 301 TAGAADALNAAHNNSAAYPAPQTLTGRNTGLESTDSHNFTGATTLAVADSTGQLVRRIDV 360 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + +A + + + N +++ + N Sbjct: 361 DFDAATYSVDGGAAVAFAGTVGDLAAALNTALAGVGSASFANGVLSVSASSAN 413 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 39/381 (10%), Positives = 104/381 (27%), Gaps = 2/381 (0%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + ++ + +D +A D + + Sbjct: 333 STDSHNFTGATTLAVADSTGQLVRRIDVDFDAATYSVDGGAAVAFAGTVGDLAAALNTAL 392 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + V++ + D + D + +S G++ +VR++ Sbjct: 393 AGVGSASFANGVLSVSASSANNGVAFLQDEVSPSDRGGRGLSHFFGLNDLVRSDKPGFFE 452 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIR 279 + + I V S + + Sbjct: 453 IGMSAAEPHNFTTGTSLSFRVDTVNGKTAGSYTIPMVTGGSVGDIITALNDTTSGVGRYV 512 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + G + F LD + + + Sbjct: 513 TFALDSDGQLDYTANPGYEGFELALTGDDTSRGTSGVSFSDLFGIGLDARASRAEGFAVD 572 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNV 398 + S+ L + + + +G + + + FD + + Sbjct: 573 TKIRADSSRLALGKLDIDAATVVGDYVLSSGDNRGGSALQAALSTPRAFDAAGSLATSTA 632 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 +L +Y G + + + + + ++ ++ GV+L EEL+ + +QSY Sbjct: 633 SLGDYTARIAGTIGSRAARAESEAASAATLQATAAQKRADVEGVSLDEELAAMTLYQQSY 692 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 N + +++ +M TL+ V Sbjct: 693 NAAARMLQAAKEMTDTLMGIV 713 >gi|220932517|ref|YP_002509425.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] gi|219993827|gb|ACL70430.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] Length = 519 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 43/522 (8%), Positives = 118/522 (22%), Gaps = 47/522 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49 ++ + + I NI N + Y Sbjct: 1 MMRSMYAGVSGLKAHQTRMDVIGNNIANVNTVGYKSSSVTFKEMLSQTLRGAKAPQGGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + + + + ++ + +L Sbjct: 61 GVNPMQVGLGVGVGSITVDHTQGNLQPTGVTTDLAIQGNGYFVVNNGQKNLFTRAGRLNL 120 Query: 110 SLESYSKNLSEDILGKTVI-----------------------DNAEEVVQNFNTSAREVQ 146 Y N+S + + + T + + Sbjct: 121 DDNGYLVNVSNGFVIQGWMADISTGTINSGQDPENIHITDEYSIMNARATGNATISGNLD 180 Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + +L + + T + D + ++ + Sbjct: 181 SQFGGTREITVDVLDSLGEMHTVTLSFTKRVPELTTTIGG-WDLNFRATEPDINLNNLTI 239 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY------TVTSESNPIFIDGVVVS 260 ++ Y S T+ D + + + N + V ++ Sbjct: 240 DFLADDDSQINASYNSGTNTVTVAADWDNSSTNAPADLEAIENAINDALNANGLASVDIT 299 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--VPGLF 318 + A+ + + + + L ++ + + I N + G Sbjct: 300 ATTTGAMTDFDGAGAITLSNPPSNTWDWNLVDVTDANLPASPASGTITFNPDGTINSGSN 359 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + + + + + + + Y Sbjct: 360 GSIAFDPTNGAATGQTINLDFSALTQLAEGFDFKINSDGYETGALEGFTIDDGGVITGSY 419 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + +A L++ S + IS Sbjct: 420 SNGLVRPIGQIAIAYFVNPSGLMKEGETLFSP--SENSGDPQIGEAGSGGRGKISVGNLE 477 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E+ + +I ++ + ++K+I TD+MLQ L+ + Sbjct: 478 MSNVDLAEQFTDMITTQRGFQANSKIITTTDQMLQDLVNLKR 519 >gi|311105935|ref|YP_003978788.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] gi|310760624|gb|ADP16073.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] Length = 491 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 54/494 (10%), Positives = 122/494 (24%), Gaps = 24/494 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+Q I NI N+ + + V ++ Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKV--AAINQ 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G + + K M D + ++ N L Sbjct: 60 RFTVGTVNGGGGEYDIAIDGAKGMFRVTDQSGAVMYTRNGEFLVDKNNFIVNAQGYRLTG 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + V + +N + T + Sbjct: 120 YPPGSVGANPVELQLPTANVAPKATSTGTTVANLDANAKVIYETNTTTDPGSAGTVTLNG 179 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A+ F LQ + N + VV T + + + Sbjct: 180 VAYTFTRSNVGALQWPVGGVPPDGTYINGANTVVITGGAGAVTSGDIKTMAGYDEYVAPT 239 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKA----LLQIRDSVVPIFQNQLDEMARVLIGSF 301 P +N + + ++ + G Sbjct: 240 IEVGKPFDPKLSSTYTNASPMTVFDSLGNSHQVMQYFVKRPAATADTSTYDVYYTIDGQA 299 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 A P F + + + +S ++P + + + +F Sbjct: 300 MAPTTEAAGVWGNPQKFTFNKAGVMTSAPVVNLSFATPGGGTTPADPINIAMNYAGTTQF 359 Query: 362 LWN----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N++G ++ Y + + +A + L Sbjct: 360 GSAYKLVAKPDGYASGEFSGINISGDGSIVASYTNGETQIVGTIVLADFSNLQGLQPVGN 419 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N W E + S L + + + + V++ +EL +I +++Y +++ I Sbjct: 420 N--AWTETSASGQPILGQPGSNGLSKVVGQATESSNVDMSKELVNMIIAQRTYQANSQTI 477 Query: 466 MFTDKMLQTLLEGV 479 D+++Q L+ Sbjct: 478 KTQDEIMQVLMNLK 491 >gi|326319103|ref|YP_004236775.1| flagellar hook-associated protein FlgK [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375939|gb|ADX48208.1| flagellar hook-associated protein FlgK [Acidovorax avenae subsp. avenae ATCC 19860] Length = 643 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 51/453 (11%), Positives = 135/453 (29%), Gaps = 19/453 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N + Y R+ + V V T Sbjct: 2 SLLNVGARALLANQVALQTAGHNIANVNTAGYSRQTLSLQTVQGQFTGGGYIGQGVDVQT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + A S + + + + + I+ + +S + Sbjct: 62 ILRNHDELLTRQAAAADSVQSADKTRAERLSQLQDVFG--GGTSGLGAAITDMLNSFKDV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + I +E ++A V +I+ +++ +++ L ++ VN Sbjct: 120 VASPMDMTARTVSITRMDETAARMRSAAGRVDEIQYTVKEQLNGDVNALNALAKQMASVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + I + +D LDQRD ++++I++ + + + ++ + ++ + L Sbjct: 180 EQIARVKGNGQTPNDLLDQRDQIIRQINQYVQTTQVAADDGTVGLFVAGSQPLVLGTTAT 239 Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + +S S ++ G + G++ LL+ ++ + +N L Sbjct: 240 PLQVQESSMFPGSGQLKVYFSPPGTKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349 MA+ + + + + + + G + + + + S+ Sbjct: 300 MAQAIGMTMNAQHKLGLTLDGQAGKDLFTVPASMPGYTSGTAVGNVSFSDATKFAASDYE 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + DL N + AG + ++ Sbjct: 360 VRFTTPPAGQVVRLSDGKATAFTDLANLAGQQIDGLTFNMTTAGAAGERVMFRPFSSAAR 419 Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTV 440 +E DL S + Sbjct: 420 DIEAKVLSPRDLAAASPVNAAMGTANNGSLQLS 452 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 49/441 (11%), Positives = 108/441 (24%), Gaps = 14/441 (3%) Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R N+ + + A +G L + +S +L+ Sbjct: 201 QIIRQINQYVQTTQVAADDGTVGLFVAGSQPLVLGTTATPLQVQESSMFPGSGQLKVYFS 260 Query: 113 SYSKNL---SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + +LG + N R + A A L L Sbjct: 261 PPGTKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGRMAQAIGMTMNAQHKLGLTLDG 320 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLF 228 + + + + + VV SDG Sbjct: 321 QAGKDLFTVPASMPGYTSGTAVGNVSFSDATKFAASDYEVRFTTPPAGQVVRLSDGKATA 380 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIR 279 T ++ ++++ T + + V+ +A + + Sbjct: 381 FTDLANLAGQQIDGLTFNMTTAGAAGERVMFRPFSSAARDIEAKVLSPRDLAAASPVNAA 440 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 QL + P G G+ + Sbjct: 441 MGTANNGSLQLSSIKATASPYTPPPTPGGVTLTFTAGPPATYGVTGSTSPASGTTGLAYT 500 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNV 398 + + G+ V N + ++ N + + Sbjct: 501 PGQPITIDGWEITLKGTPGTGDTVKVGNALDAQYGDAYKRNAGNASAIDALGDVKMFDDA 560 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 T+ + + + ++ S + ++ S GVNL EE + LI+ +Q+Y Sbjct: 561 TMSDGYAGLMAQVGTRMQNAKYASDVSSTISTNLERDRSAVAGVNLDEEAAKLIQYQQAY 620 Query: 459 NISNKLIMFTDKMLQTLLEGV 479 S K++ + L++ + Sbjct: 621 QASAKVLQIAQSIFDNLIQTM 641 >gi|253996313|ref|YP_003048377.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8] gi|253982992|gb|ACT47850.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8] Length = 657 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 59/417 (14%), Positives = 139/417 (33%), Gaps = 17/417 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 + N ++ A ++ NI NA Y R+ + + + Sbjct: 3 SNILNIGKSALAAAQVGISTTGHNIANASTPGYSRQVVVQAAAQSQNFGYGFVGQGTEIA 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + ++ S + + + +S +++ Sbjct: 63 SVTRIFNDILAAQAVRSQSNSSSAN--TYLSQMTSINDMLSNSTAGLNPAMSDFFGAVQK 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S N S+ ++++ A+ + F T+ + +IR + ++ + + + ++ + Sbjct: 121 LSANPSDIPTRQSMLSYAQSLASRFQTTNNRLNEIRDSVNTQLTSSVGLVNTYAKQIASL 180 Query: 174 NDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ND I K +A+ +D +DQRD L+ ++S+ I + + + VY +G L Sbjct: 181 NDVIEKSISANGSTPNDLMDQRDQLVLELSKQIKTTVVSQGQGGYNVYVGNGLPLVVGKE 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + +++P G I LLQ R + QNQ+ + Sbjct: 241 TFNLLTTPSPTDPSRLEVAYQSSSKTTVLGA-NSLPGGVIGGLLQFRAESLDAVQNQIGQ 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A VL +F+ + + + G + + + + N T ++P+ + Sbjct: 300 IAVVLGNTFNSQLMQGYDLDGTLGSALFNIAEPVVNSSALNSGPTTTPA---NASPAEVA 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 +K + L + S N F + +T+ + + Sbjct: 357 AKIVDAKALTTSDYKLLFDGTNYSVTRLSDNTTQNFSSLPANIDGLTISQTTGTMLA 413 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 40/439 (9%), Positives = 104/439 (23%), Gaps = 2/439 (0%) Query: 41 TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK-EMMSADDHYNNS 99 NV V L S RL ++++ + + Sbjct: 218 VSQGQGGYNVYVGNGLPLVVGKETFNLLTTPSPTDPSRLEVAYQSSSKTTVLGANSLPGG 277 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + R +N I +++Q + + + + + Sbjct: 278 VIGGLLQFRAESLDAVQNQIGQIAVVLGNTFNSQLMQGY-DLDGTLGSALFNIAEPVVNS 336 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + + A A D + + + +S N + Sbjct: 337 SALNSGPTTTPANASPAEVAAKIVDAKALTTSDYKLLFDGTNYSVTRLSDNTTQNFSSLP 396 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 DG T+ +T + + + + + + Sbjct: 397 ANIDGLTISQTTGTMLAGDSFLIKPTQNAATKFTLAITDARKLAIGGSILSSSANVANTG 456 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + F+ + + + + Sbjct: 457 TASISSPAADSTYASSPIASPFNITYNAGAPNTLTGFIATEPVTVTSNGTSVTYAAGAPV 516 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + + + + I N + Sbjct: 517 TFVNGATISTAGMSFTISGTPNNGDQFTVTPNSVTGPGDNTNGLLLAKLQNADTITGNKS 576 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + + + + L + V I+ S GVNL EE + LI+ +Q+Y Sbjct: 577 YSDAFGQMVNGVGNKTRELGILSVSEGQVLEQINASVQAESGVNLDEEATNLIRYQQAYQ 636 Query: 460 ISNKLIMFTDKMLQTLLEG 478 + K++ ++ LL+ Sbjct: 637 AAGKMMQIASQLFDVLLQL 655 >gi|152965624|ref|YP_001361408.1| hypothetical protein Krad_1658 [Kineococcus radiotolerans SRS30216] gi|151360141|gb|ABS03144.1| protein of unknown function DUF1078 domain protein [Kineococcus radiotolerans SRS30216] Length = 462 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 43/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + + NI N + + + + +T + Sbjct: 1 MLRSMFSGVSGLRSHQTMMDVVGNNIANVNTAGFKSSSVVFADTLSQLTKAAGAPTDAAA 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + M A + + Sbjct: 61 GTNPAQVGLGVRVNAITQNMTQGSAQATGKSTDLMLQGDGMFAIQQGDGTFYSRNGSFTL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + D A V + + +I + + Sbjct: 121 DANGSVVTNDGGYVMGWKADAAGAV----------------NTNGQIGKLVIPSDTVMPA 164 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + K L D + S G+ + Y G Sbjct: 165 VATTEAKFKGNIDRTFKTPTALPAADQYVTGSSPGDGVIKGTAVTSSFSSYDDQGIATKV 224 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 V + + ++++N + + + + + Sbjct: 225 FVTFTNDVNYTAATAASTDANGVVTPAKAAVYEPTNVWHVKAVDS----------NGKEV 274 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + A E DP + +G + + S Sbjct: 275 VLKKADGTTAETVEFDPDGAAKGTNSMVATVEGAGTKADSTVSLDLTGLTSYVGTTG-TS 333 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + +Y + + + +A N + L + + Sbjct: 334 NVNPVADGAPIGTLTGFSFGTDGVITGNYSNGYKQTLGQIAIASFNNSAGLRKEGNSLYS 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + I V+L E + LI ++ + ++K+I +D Sbjct: 394 V--STNSGQPVFGIAGSAGRGSILAGSLEMSNVDLSAEFTNLILAQRGFQANSKVITSSD 451 Query: 470 KMLQTLLEGVK 480 ++LQ L+ + Sbjct: 452 ELLQDLVNLKR 462 >gi|303325592|ref|ZP_07356035.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3] gi|302863508|gb|EFL86439.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3] Length = 710 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 48/414 (11%), Positives = 121/414 (29%), Gaps = 17/414 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 L + N Q+ N + + N+ NAD + Y R+ + V Sbjct: 2 LYGLLNIGQSALNASQAWISVTGNNLANADTEGYSRQYVDQRDAGGLTAKPGAQGLGVNA 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ ++ + + E + ++ + ++K + + Sbjct: 62 QQIMRFFDSFLERSYVRQATNSARWDEQDTIMTSLENIF-NESNRAGLSSSLNKFFTAWQ 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++++ A+ + F ++ ++ I+ + D I + + + Sbjct: 121 DLALRPEDAATRESLLSYADNLSDMFGSTMDGIKAIQKEMDVSIGQTVDRVNDISKAIAD 180 Query: 173 VNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I T + + LD+RD L+++++ + + TI + V S+G L + Sbjct: 181 LNRQITSNTVDGVSNPNSLLDKRDQLVRELASLADVETIDNGKGNFRVQLSNGQPLVDGQ 240 Query: 232 PRDINFEKMNSYTVTSESN-----PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 N + DG V G + + Sbjct: 241 NSYELKIMGPQAENRLSVNSPYKGSVQFDGADSHEYTVEIVNGGNAGDVPPQFRVSLDGG 300 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + L + + G ++ V + DN + + + Y Sbjct: 301 KTWLRDDDGKELHYDITDSDGDGTTDQVLVKNLKISFSAADNFHAGDKFDIMPKDGLYWI 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 P+ + + F + Y + + N +L Sbjct: 361 EPTRGPENITPQIGFDGTDNLSRLTGGKLAAYYNIRDDNCGRYMDELNAVASSL 414 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 97/303 (32%), Gaps = 6/303 (1%) Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT------LFETVPRDINF 237 A + + + + + S + + + + G+ + ++NF Sbjct: 408 NAVASSLIWEVNRIHSQGSGLSMLDYAQGQQRVEDITKALGSAQAILPFSDKLQAGNVNF 467 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + T S+ + Q K ++ + +++V N + Sbjct: 468 HFYDKTTGEYNSSGMLDFDPATPGIQNFDPDKHSLEDVRDAINNMVDADGNPIAPPPLNA 527 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + +V AD + + ++ Sbjct: 528 SIQDGKLIIETNPAADVTFGMGADSTGLMAALGINTFFSGDSADNLAVNSQVHSNANLIA 587 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S + + AG +K + N ++ EY N + + +R Sbjct: 588 SGQVNGQHQANAGDNVTATAIGKLADKKITISTLWKTVDNQSISEYYANLVTTVGSDRRL 647 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + N ++E ++ GVN+ EE+S LIK + SY + KLI D+MLQTLL Sbjct: 648 SKTNSEYHSALTNDLAERTASVSGVNMDEEMSNLIKFQHSYTAAAKLITTADQMLQTLLG 707 Query: 478 GVK 480 + Sbjct: 708 LKQ 710 >gi|94312675|ref|YP_585884.1| flagellar hook-filament junction protein [Cupriavidus metallidurans CH34] gi|93356527|gb|ABF10615.1| flagellar hook-filament junction protein [Cupriavidus metallidurans CH34] Length = 631 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 60/466 (12%), Positives = 150/466 (32%), Gaps = 31/466 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++FN + N A + N NA Y R+ T+ + + VT Sbjct: 2 SLFNIGLSGLNVAQNALTTTGHNFSNAATPGYTRQSTIIASAGGQFTGSGFFGQGSSTVT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L +SA + S + + + AD N + K ++++ Sbjct: 62 VQRVYDGFLTGQLRTATSASSELSTFSSQISQIDNLLADQ--NAGLAPLMQKFFAAVQTV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + + ++ A+ + S+ ++++ + ++ + + + ++ +N Sbjct: 120 SDTPGDTAARQGMLSAAQALTGQVKASSDYFKQLQDGINTQLTSSVRQVNDYTKQIASLN 179 Query: 175 DAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 I TA+ +D LDQRD + ++++++G +V++ N V+ +G L Sbjct: 180 KQISQLTAASGGQPPNDLLDQRDQAVSELTKLVGAKVVVQDGNTYNVFVGNGQPLVMGSE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ +V G I LL+ R + QN + Sbjct: 240 SYDMTAVPSAADPSRITIGYTLPNGNTVQSEDGSVTGGSIGGLLRFRSQSLDQAQNAIGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------ 346 ++ + F+ + + + G + + S + + Sbjct: 300 LSLAIGQVFNNQHKLGIDLNGATGTDLFSLGQPTTYANANNKSNAVATATITNAGSLTTS 359 Query: 347 -----------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + L D V+ + + G +N + + I Sbjct: 360 DYSLKFDGTNYSLTRLSDNTVVATSTSLSGISADGISVSLNGPMSANDSFLIQPTRNAAA 419 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 TL+ S + +++ ++ G Sbjct: 420 GFGTLITDPAKVAAASPARADASTQNTGSGTAKLSGVAQGFTQLSG 465 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 35/373 (9%), Positives = 105/373 (28%), Gaps = 7/373 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y+ + + + ++ + + + + Sbjct: 258 GYTLPNGNTVQSEDGSVTGGSIGGLLRFRSQSLDQAQNAIGRLSLAIGQVFNNQHKLGID 317 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N A S + + + + I + + ++ + + +L Sbjct: 318 LNGATGTDLFSLGQPTTYANANNKSNAVATATITNAGSLTTSDYSLKFDGTNYSLTRLSD 377 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + ++++ + ++G + +++ + + + Sbjct: 378 NTVVATSTSLSGISADGISVSLNGPMSANDSFLIQPTRNAAAGFGTLITDPAKVAAASPA 437 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + S ++G ++ L K + V P + Sbjct: 438 RADASTQNTGSGTAKLSGVAQGFTQLSGKITAKYTGAGYTFTDALGNVVTPTSTAASGTG 497 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA------GINTNVTLLEYAR 405 D F ++ AG ++ + N +A IN + + Sbjct: 498 TDYTFSGLTFHFDGTPKAGDTFTLSSNSGATADNGNALALAKLQTAKTINGTSSFNDAYA 557 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + + + ++ + + GVN+ EE L+K +Q Y + K+I Sbjct: 558 SLVNQVGSDAKSASIASESQDSITTQVTSAQQSVSGVNMDEETVNLLKFQQLYQANAKVI 617 Query: 466 MFTDKMLQTLLEG 478 ++ TLL Sbjct: 618 QTASTIIDTLLSI 630 >gi|332187897|ref|ZP_08389630.1| flagellar hook-associated protein FlgK [Sphingomonas sp. S17] gi|332012058|gb|EGI54130.1| flagellar hook-associated protein FlgK [Sphingomonas sp. S17] Length = 447 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 53/489 (10%), Positives = 127/489 (25%), Gaps = 56/489 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 + + + + ++ NI N Y RR + Sbjct: 1 MSDLLSIGASGVRAYQTALTAVGENIANVGTDGYSRRTVTMREVVPAAGLAANKVSAGSG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V + A ++ + + ++ E + ++ Sbjct: 61 VAVAGIARATDVYASAAVRAATADLSRTTTGATWLTRIESAM----TGDQVQTRLTAFFT 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + L T+++ A+ F + +I AD D + +L + Sbjct: 117 AARTLAAEPTSAALRSTMLETAKSTATAFTATDSAFDQINADFDGQARQAAHDLSSLATS 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L VND + + DQRD +L ++S + I++ V D Sbjct: 177 LVRVNDGLGRTQPGTAASAQLTDQRDQILAQMSALSDITSTTDELGRATVRLGDRVGPVL 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + S + + G G + + + + Sbjct: 237 ASTDMVGSVSYQRRADGSVGFTVSLQGESQDFIPTGGALAGALDGAER-----INTTRAA 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +++A+ + + + + G + + Sbjct: 292 FNQVAKDFVDTVNGLQANGQDLNGDQGTPMF---------------------TLTAGTAA 330 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 SK + D + + + Sbjct: 331 MTLAMTDGSKIAAATGGQGSRNADNLYALQTAR-------------GTGQFEGRLTQIVT 377 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + S GV L E L++ +Q+Y+ S+++I Sbjct: 378 DNATALKQRQTVAEAQTAISDGAKATLSGASGVTLDSEAVTLMRFQQAYSASSRVIQMAR 437 Query: 470 KMLQTLLEG 478 + Q++LE Sbjct: 438 ETFQSILEI 446 >gi|254524155|ref|ZP_05136210.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14] gi|219721746|gb|EED40271.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14] Length = 626 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 131/449 (29%), Gaps = 16/449 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + +V + + A+ N+ N + Y R+ + + Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTIGNGTRI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L S + + + L + ++ + S DS+ Sbjct: 61 TDIRRTADQLAISRLLDSSGELARLKQLSGMADRVNSLFSE--GATNIAGVWSNFFDSVS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S N S + ++D + + F + + + + + + + R E+ Sbjct: 119 GLSSNASGTADRQNMLDGGKALANRFVQLNTHLNNLNGEVNNGLLAGATEVNRLAQEIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N AI T + A D LD+RD L+ ++ G + ++++ M VYT+ G L Sbjct: 179 INGAI--GTNIANAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y + G + + G+I LL+ RD+V+ Q +L + Sbjct: 237 ATKVTTVADPYQPERLQLALETQGNTIR--LDAKAVGGQIGGLLEFRDTVLTPAQAELGK 294 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L +F++ + G + + Sbjct: 295 LAVGLAETFNQTHHQGVDMYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQ 354 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + W ++ + + + V + Sbjct: 355 NVVLQFDGTQWKASRADTGANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAG 414 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVG 441 S + S++ + + T Sbjct: 415 VAGSMEVAITDPSRIAAAAAVKGAAATSN 443 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 32/373 (8%), Positives = 95/373 (25%), Gaps = 5/373 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + ++ + +A+ K + + Sbjct: 253 QLALETQGNTIRLDAKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAETFNQTHHQGVD 312 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + + + +S + + N + + Sbjct: 313 MYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQNVVLQFDGTQWKASRADT 372 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ + N + + + + + + ++ + Sbjct: 373 GANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAGVAGSMEVAITDPSRIAAA 432 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + PQ + + Sbjct: 433 AAVKGAAATSNTGTGKLSGVTVSDSTNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492 Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 G + + N+ P + ++ + A + VTL Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASRLAKVESAKAFNSGTVTLNGALGGL 552 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + V+ + E+ GVNL EE + +++++Q+Y +++LI Sbjct: 553 TTQVGAAARSAEYSLEAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612 Query: 468 TDKMLQTLLEGVK 480 D M QT+L V+ Sbjct: 613 ADSMFQTILGAVR 625 >gi|126175146|ref|YP_001051295.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|125998351|gb|ABN62426.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] Length = 460 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 53/483 (10%), Positives = 117/483 (24%), Gaps = 35/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI NA+ + N V Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDMAIKGGGFFVTSSELGTLDHA----FTRAGAFKVDSNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ ++ ++ Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVKTENVTLQMNLDAKAAALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D + I + ++ M Y + Sbjct: 178 -------------ALFDPADPKTYNNVTSMTIYDSLGQSHIMTTY------FVKPKDGAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N E ++ P+ ++G + + + V Sbjct: 219 NGENNWVAYYAVDNKPVNLNGPAGKYDVDTNGDGSPDVPTVAGGGGVSAQTAGGWTGSVL 278 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + D P G+ Q ++ QY + Sbjct: 279 KFNSVGAYIDSNPAVIATQPLGNTGAGVLGPGADGTQSVTVKFNAPTQYADPFAATELTQ 338 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 339 DGTTVGRLTNVEIGADGLITASYSNGSTVALARVALVRFANEQGLTQVGN--TSWKASLA 396 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 397 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 456 Query: 476 LEG 478 L+ Sbjct: 457 LQI 459 >gi|255021361|ref|ZP_05293409.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] gi|254969224|gb|EET26738.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] Length = 684 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 132/446 (29%), Gaps = 17/446 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS + + + A + A NI N + Y + + + Sbjct: 1 MSGVSGILSSALSGLQVAQDALQVTGNNIANVNTPGYSQESVVQSSLPTTFLGGQYYGNG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + + + ++ Q L + + I++ Sbjct: 61 AQVSSVQRAYSSFLQSQVWSATAQASGQSTLSTSLQ----GLLGTLSGGAIASSINQFFS 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + ++ NA+ + Q FN+ A+++ I +++I + + + Sbjct: 117 GAAQVAASPESVPARQALLSNAQSLSQTFNSLAQQLDFINTGVNQQISQSVQEINTLSNG 176 Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + +N I + + + LDQRD L+ +++ +G+ + ++ + VY S+G L Sbjct: 177 IAQLNSQIASLQGQGNGNPNSLLDQRDQLITELNAQVGVQVLPQSGGQVNVYLSNGQVLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N Y S + ++ + + G + LLQ R + QN Sbjct: 237 ADSKAFSLQTQPNPYDGQSLNVGYLGPNGGPGADISTGLSGGVLGGLLQFRSQSLIPAQN 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +A L S + + + PG + Sbjct: 297 GLGLLADGLAASVNAQQAQGLDLNGNPGAPLFQLGGVQIFAHQGNTGSASVSGQIRDVAA 356 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + +++ Y S V L +A + Sbjct: 357 LTADNYIVSYQGSGQWSVQDQSTGQILSSYSGSGTPPSGTFSVQSSGGAQVLS-FAGVQV 415 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434 + L + + + Sbjct: 416 SVSGNPGNGDRFLVEPTHLGAVSLQT 441 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 40/439 (9%), Positives = 101/439 (23%), Gaps = 23/439 (5%) Query: 41 TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + + L + +G + + D N Sbjct: 269 ADISTGLSGGVLG----GLLQFRSQSLIPAQNGLGLLADGLAASVNAQQAQGLDLNGNPG 324 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + ++ N + + D A N+ S + + ++ Sbjct: 325 APLFQLGGVQIFAHQGNTGSASVSGQIRDVAALTADNYIVSYQGSGQWSVQDQSTGQILS 384 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 S + A + ++ + + + V+ Sbjct: 385 SYSGSGTPPSGTFSVQSSGGAQVLSFAGVQVSVSGNPGNGDRFLVEPTHLGAVSLQTVLS 444 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + N G VS+ + + + Sbjct: 445 NPAQIAAASPYVSSPGELVNGALQNANLGNLTLSSGSYVSTAPSGSTVVSGLASFPTPLQ 504 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + ++ V+ + G + + Sbjct: 505 ITLSSGGSSGSSVSYVVSSGSGTSSGVIATGSVTLGGSGSFIDIAYPGTPGGYWQVNLSG 564 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + L GG S + L L N T Sbjct: 565 SMAASGDAFTLSPGGPGSNGNAAALAALGTDSIL-------------------GNGQSTF 605 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + + + GVNL +E + LI+ +Q+Y Sbjct: 606 NDQTAQLLTQVTTQAQQAQSNAQAQGNLLSQAQAAQQSVSGVNLDQEAANLIQYQQAYQA 665 Query: 461 SNKLIMFTDKMLQTLLEGV 479 + K I + + Q+LL+ + Sbjct: 666 AAKAISVGNSLFQSLLQAL 684 >gi|77460469|ref|YP_349976.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf0-1] gi|77384472|gb|ABA75985.1| putative flagellar hook protein [Pseudomonas fluorescens Pf0-1] Length = 443 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 54/473 (11%), Positives = 119/473 (25%), Gaps = 32/473 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + A++Q NI N + + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATAGFKSSRAEFEDVYSSTRLGSGSKVI------ 55 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + D N + + S N S Sbjct: 56 ------------GNGVRLANVSQQFTQGDINNTGNVLDMGINGSGFFTMSNNGSISYTRA 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +Q D++ +I + L++L + + K+ S Sbjct: 104 GTFKVDNNGFITNTDYTSRLQGYGVDSNGKI------INGVLTDLKIDTSNLAPKSTSSV 157 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + L+ + + + + + T +++T ++ T Sbjct: 158 TSTINLNSSEKPIDQTAFP------FDPSKLESYTKQFSTPIYDTQGNSHVMDQYMVKTS 211 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + GS A DS + Q + Sbjct: 212 DNTWKVYTLVDGRNPDATGSNPVTTPPVASTLTFDSSGKLLQVSTPSTLPAPAPNPIISS 271 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + G++ ++ QY ++ + Sbjct: 272 DLKLTGWVPGTVTNGVFTPNGAAANPAGVTISLAKTTQYNADTARSIPTQDGYATGQITN 331 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + G L ++ ++ +K +A L GW E S Sbjct: 332 LTIDGTGTLFANFSNNQSKAIGQVALASFTNEQGLQPIGG--TGWKETFASGVPGYDAPK 389 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + VNL EL LIK + +Y + K I ++QT+++ Sbjct: 390 TGTLGEVVSNSLEESNVNLTNELVDLIKGQSNYQANAKTISTQSTIMQTIIQM 442 >gi|319781665|ref|YP_004141141.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167553|gb|ADV11091.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 419 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 107/481 (22%), Gaps = 63/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI N+D Y R + T S Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANSDTTGYKRSSAEFSTLVMPSTGGAYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + D + N + Sbjct: 61 TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDGQGRLVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +N A V I + N Sbjct: 121 GFQLMAYSYENGVP--------AATVNGFEGLVPVVISDQGMTATPSTEGSFAGNLPAGA 172 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + K S ++ + + Sbjct: 173 TPVATANLPAANAATAQYTSKSS----------------------MVAYDNLGNKKLLDV 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T D ++ G + Sbjct: 211 YFTNTGAGTWQVAVFDQSKATAGTSFPYTAGGLLG------------------------S 246 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + D G P ++ + Q + + + + Sbjct: 247 ANLTFDTTTGKLTGTPTNVSFTVPNGAT------LNLDLSALTQLGTGFTVSDAQVNGNA 300 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y D K P+A + + L N S + Sbjct: 301 PSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQLKALPGNVYSQ--GTESGAV 358 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ I V++ EEL+ +I ++SY ++K+ ++ L+ Sbjct: 359 RVGFANEGKLGSIISGALENSNVDIAEELTNMIAAQRSYTANSKVFQTGSDLMDVLVNLK 418 Query: 480 K 480 + Sbjct: 419 R 419 >gi|239995125|ref|ZP_04715649.1| flagellar hook protein FlgE [Alteromonas macleodii ATCC 27126] Length = 461 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/483 (9%), Positives = 126/483 (26%), Gaps = 34/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + NI N + + V Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLSGGKTKVGDGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F A +++ D + + +++ Sbjct: 62 QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFS----FTRAGQFKLDSDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + D L +++ ++ V+ + E+ + ++ Sbjct: 118 VNSNGDNLLGFPVNSDGTSASVALSTTEPVRIPDSSGSPAQTTEVDIRMNLPAGDAALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D L + + + + +++ M Y T + Sbjct: 178 QD-------------FDPEDPLTYNAATSVTVYDSLGDSHVMTYYFIKDATPGVDNEWYV 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ ++S G G + + + Sbjct: 225 ATAIDDTLVDMTDSA-----GNDTDPATAVNSVGGNTGNAVTASKLIFSQGGDFAGMETP 279 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + K + + + + T Q+ S Sbjct: 280 DGLPTLDFKMQTEALGAGILANGSDPTQQISIDFNLDVNNATPNEPTQFASAFEVTSLEQ 339 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + + + ++ + + + L + +S W E Sbjct: 340 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQ--ESSTQWKESIL 397 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I+ S VNL EL +I ++++ +++ + + + QT+ Sbjct: 398 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 457 Query: 476 LEG 478 L Sbjct: 458 LNI 460 >gi|254440385|ref|ZP_05053879.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255831|gb|EDY80145.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 432 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 61/490 (12%), Positives = 135/490 (27%), Gaps = 68/490 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55 M++ + FN + + + + A+I NI N+ Y R T Sbjct: 1 MTISSSFNASVAGLASNASRLATISDNIANSSTYGYKRVVADFHSMVVDGGKGKYTAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI---SKLRDS 110 + + D+ L A S+A + + E S + + + R Sbjct: 61 GVTTQRLIDERGPLVATSNATDLAVRGRGMLPVTERSSVSVGSESDFSLRLATTGSFRTD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 E Y + +L + + + ++ IR D ++ I +N+ Sbjct: 121 AEGYLTTTNGLLLLGWPSNADGSLPNLPRDTIGGLEPIRIDTNQFISDPTTNV----ELA 176 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + AS ++ D L Sbjct: 177 VNLPATATEAGASGDTEELLVEYIDN------------------------------LGIA 206 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++F T + +F++ G I I + +L Sbjct: 207 ETLTVSFAPNVPATGATNEWTMFVEDSA----------SGTIIGEYTIEFDDLAGLGGRL 256 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + G+++ ++ +++ I + Q N + Sbjct: 257 LSVNNTTGGAYTADGTVSVTTDSGTIEIDIGNIGEPGG------------LTQLSDNFAP 304 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + S + + + + ++ P+ ++ L+ S Sbjct: 305 VSIIKNGSPVGTMTSVEVDANGFVRALFDNGVSRIMYQVPLVDVSNPNGLISEDNQSYSV 364 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S L I ++ EL+ LIK +++Y+ + K+I D+ Sbjct: 365 --TPESGQFFLWDAGDGPTGDIVSFAREESATDVAAELTNLIKTQRAYSSNAKVIQTVDE 422 Query: 471 MLQTLLEGVK 480 MLQ + Sbjct: 423 MLQETTNIKR 432 >gi|313896955|ref|ZP_07830502.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon 137 str. F0430] gi|312974402|gb|EFR39870.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon 137 str. F0430] Length = 582 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 130/399 (32%), Gaps = 18/399 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S A N N + NI NA Y R+ + + Sbjct: 3 STFAGLNTMVKGIQNNQLSLDTTGHNITNASTPGYSRQSVNSAATNYQERSSLYGDVLVG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V ++ DK + +SA + ++ E + +D N + + + Sbjct: 63 GGVDALSLTRARNIYADKQFWSETSAQNFYKTNKTNYDKVETIF-NDSKNTGILNAMKQF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 D+ + S S+ V+ +V T+A ++Q A E+ +++ + Sbjct: 122 YDAWVNLSNYASDAASRTAVLTKGNNLVDRLRTNANQLQDQIASQYDEMRIQVQKVNSIT 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +++ +N I + + A+D DQRD+L+ ++SEI I+ N V S+G TL Sbjct: 182 EQISRLNKNIMYAETNGAKANDLRDQRDLLVDQLSEITNINVYEEANGMYTV-VSNGMTL 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 R + E + + + G G +KAL + Sbjct: 241 VNREGR-LTLEMSEPMNNEEYGITDYTIRIKEAGGIGYVPQSGVLKALQDTIVQD-KGYI 298 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + L ++A L+ +F++ + ++ + + G S T + Sbjct: 299 DNLADIAATLLTTFNDVHKQGAGIDQDATTWLNFFGDNGNKSTATGGSYTGTHYTWHVDA 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + R + V + + S K Sbjct: 359 ATGERWMEQTAASVNKTVSGTTTTITMTDSVVASDKKKL 397 >gi|203284204|ref|YP_002221944.1| flagellar hook protein [Borrelia duttonii Ly] gi|201083647|gb|ACH93238.1| flagellar hook protein [Borrelia duttonii Ly] Length = 441 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 53/490 (10%), Positives = 122/490 (24%), Gaps = 63/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + +NS Sbjct: 61 GVNPKQIGLGMTVAAVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + + Q FNTS+ I DKE + Sbjct: 121 DSNRHLVNPANGMRIQGWMAESVGGEQVFNTSSDIRDLIIPIGDKEGAKATEYI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++Q+ + + I+ N V + T + E Sbjct: 175 ----------------TFACNLDKRLPVVQQGANEVDIARGTWVVNKTVYDSFGNTNVVE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ T + + + ++G S+ +G + +L + Sbjct: 219 LR------VLKDATTPNTWNATVLVNGEENSNFTMGFDNEGALLSL-----NGQAGQPGD 267 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L E V +G + N + Q+ + Sbjct: 268 LLEFPITF---------------GVIDANAGEGGEQTVNLRLGTVGSYADSITQFADAST 312 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + + +A L + Sbjct: 313 TKAIVQNGYGMGYMENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGD--TN 370 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 371 FTETSNSGQARIGETGFAGLGTIRSGVLEMSNVDLAEQFTDMIVTQRGFQANAKTITTSD 430 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 431 QLLQELVRLK 440 >gi|299531280|ref|ZP_07044690.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44] gi|298720687|gb|EFI61634.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44] Length = 648 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/375 (12%), Positives = 118/375 (31%), Gaps = 14/375 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N + Y R+ S V T Sbjct: 2 SLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVAT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ A ++A + + + N I+ + ++ Sbjct: 62 ILRNFSELLNRQATAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S ++ + V+ E+ F +++ ++ ++ +++ +++ + ++ +N Sbjct: 120 SSAPTDSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSEQVAALN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ H +D LDQRD L++ I++ + S + + + ++ L Sbjct: 180 GQISRAIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAA 239 Query: 235 INFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ S ++ G + G+I LLQ +++ + +N L Sbjct: 240 KLSLQESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 M + + + ++ + G + + + S L+ Sbjct: 300 MVISIGDTLNTQNQLGLTLSGQKGGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALK 359 Query: 353 DGGSVSKKFLWNVKN 367 K Sbjct: 360 ASDYKIVFGNDAPKG 374 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 48/444 (10%), Positives = 117/444 (26%), Gaps = 19/444 (4%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R NK + + A +I L + + ++ K+ + Sbjct: 203 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 262 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168 E ++Q N E + + I ++ + Sbjct: 263 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNTQNQLGLTLSGQK 322 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224 + N + ++ D V ++ S + I VV SDG Sbjct: 323 GGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 382 Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275 T L + I+ + + + V +++ + + Sbjct: 383 QTTAFNDLTDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 442 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + ++ + S S G Sbjct: 443 VSAKINSLGDAAVRMSSLKVEKGFDASTFSAGTTLSFAPDGAGGMTYTITPAPSGVAATG 502 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 I + + G+ + + G + + + + Sbjct: 503 AYISGQAIELAPGLKVTLTGTPAVDGATSDTVSFGPNSFYSSDTGNASSFLSLRDAVIFD 562 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + ++ + + S + ++ + GVNL EE + L++ + Sbjct: 563 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAVSGVNLDEEAAKLLQYQ 622 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 QSY S K++ + ++++ V Sbjct: 623 QSYQASAKMLQVAQGIFDSVIQAV 646 >gi|332305615|ref|YP_004433466.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172944|gb|AEE22198.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 130/483 (26%), Gaps = 35/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI N + + + V Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F A + + + + E++ Sbjct: 62 QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFS----FTRAGMFKLDAENFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + D L ++ ++ + V+ + + E+S + VN Sbjct: 118 VNSNGDNLLGFPVNPDGTSSSVALSTTQPVRIPDSSGSPQPTSEVSLKMNLPAGDDAVN- 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D D L + + + + +++ M Y ++ Sbjct: 177 ------------LDLFDPSDPLTYNAATSVTVFDSLGDSHVMTYYFM-----KDSAAASN 219 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + G ++ + V + + + + + Sbjct: 220 EWVVATYMDEQPLNTEGDTIGNPPATGP-NVVGETSLGTGVAGYRMTFSAGGDFTEIQNA 278 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 S + + N T Q+ S Sbjct: 279 DGTPSPTGDIMSVALGGTILANGSDPSQTISTNFAFDPNVATADEPTQFASAFEVTSLEQ 338 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + Y + ++ I + + L + +++ W E Sbjct: 339 DGLAVGRLTGIDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQ--QSNTQWQESIL 396 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I+ S VNL EL LI ++++ +++ + +++ QT+ Sbjct: 397 SGEALAGEATTGTFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTI 456 Query: 476 LEG 478 L Sbjct: 457 LNI 459 >gi|317492422|ref|ZP_07950851.1| flagellar hook-associated protein FlgK [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919761|gb|EFV41091.1| flagellar hook-associated protein FlgK [Enterobacteriaceae bacterium 9_2_54FAA] Length = 561 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 59/428 (13%), Positives = 140/428 (32%), Gaps = 16/428 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N A + + A + N+ N + Y R+ S V V Sbjct: 1 MANLINSAMSGLSAAQTALSVTSNNLSNVYTQGYNRQTVSFAQSGGISTSTGFIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 E + L ++ + ++ + NNS + + +L+ Sbjct: 61 SGINREYNSFIVGQLRQ--GQSDYASTTAYYQQVSQIDNLLADSNNSLSANMQDFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N S+ +TV+ A +V F T+ ++ + ++A+ + + + + ++ Sbjct: 119 NLVSNPSDPAARQTVLAKANGLVNQFKTTDEYLKNLESNANVTVSNSVEQINNYTKQIAS 178 Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + +D LD RD + ++++I + +++ V + G +L + Sbjct: 179 LNDQISRLTGASGGSAPNDLLDLRDQMATQLNQIANVEITMQDGAM-NVSFAGGLSLVQG 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + S + G + +LQ R + +NQL Sbjct: 238 NDAYKLEAIPSSANPQRLTIGYNRGSGTASEVPEGRITGGSLSGILQFRSGALDNARNQL 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A + SF++ + + + VN + + Sbjct: 298 GQIALSMADSFNKVQQAGIDLNGDLTTNEPFFTIGQPSSFA-NSNNDKTVNASISAKYTD 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + ++ L ++ + + VT+ A S + Sbjct: 357 VSQTKATDYRLEYDKNGKWQITRLSDNSKITDLTPDATGKLQFDGLEVTVSPAAAKSDSF 416 Query: 411 LEKNRSDS 418 K S + Sbjct: 417 TLKTTSSA 424 >gi|194365674|ref|YP_002028284.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia R551-3] gi|194348478|gb|ACF51601.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia R551-3] Length = 626 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 125/406 (30%), Gaps = 16/406 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52 + +V + + A+ N+ N + Y R+ + Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTVGNGTRI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + L S + + + L S + +D + + S DS+ Sbjct: 61 TDIRRTADQLAISRLLDSSGELARLKQLSSMADRVNALVSDPA--TNVSGVWSNFFDSVS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S N + + ++D + + F + + + + + + + R E+ Sbjct: 119 GLSSNAAGTADRQNMLDGGKALANRFVQLNTHLNNLNGEVNNGLLAGATEVNRLAQEIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N AI T + A D LD+RD L+ ++ G + ++++ M VYT+ G L Sbjct: 179 INGAI--GTNIANAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y + G + + + G+I LL+ RD+V+ Q +L + Sbjct: 237 ATKVTTVADPYQPERLQLALETQGNTIRLDPKA--VGGQIGGLLEFRDTVLTPAQAELGK 294 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L SF++ + G + + Sbjct: 295 LAVGLAESFNQAHHQGVDLYGKLGGDFFNIGNPRVTANNANTGTASLTATYGDLGKLDAQ 354 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + W ++ + + + V + Sbjct: 355 NVVLQFDGSNWKASRADTGANVPLTGTGTAADPLVINGVKMVVGGT 400 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 32/373 (8%), Positives = 96/373 (25%), Gaps = 5/373 (1%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + ++ + +A+ K + + + Sbjct: 253 QLALETQGNTIRLDPKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAESFNQAHHQGVD 312 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKI-SEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + + + + + + + N + S+ Sbjct: 313 LYGKLGGDFFNIGNPRVTANNANTGTASLTATYGDLGKLDAQNVVLQFDGSNWKASRADT 372 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ + N + + + + + + ++ + Sbjct: 373 GANVPLTGTGTAADPLVINGVKMVVGGTPAANDRFLLQPTAGVAGSMEIAITDPSRIAAA 432 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + PQ + + Sbjct: 433 AAVKGAAATANTGTGKLSGVTVTDSNNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492 Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 G + + N+ P + ++ + A VTL Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASKLAKVESAKAFNAGTVTLNGALGGL 552 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + V+ + E+ GVNL EE + +++++Q+Y +++LI Sbjct: 553 TTQVGAAARSAEYSLDAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612 Query: 468 TDKMLQTLLEGVK 480 D M QT+L V+ Sbjct: 613 ADSMFQTILGAVR 625 >gi|332140552|ref|YP_004426290.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str. 'Deep ecotype'] gi|327550574|gb|AEA97292.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str. 'Deep ecotype'] Length = 680 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 62/427 (14%), Positives = 140/427 (32%), Gaps = 14/427 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MS + +F+ A + N +S+ + NI N + YVR T S V + Sbjct: 1 MSSVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELQNSQVFGVEIGNTERII 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L +A+G+ S + + A + NS + +S+ +L++ + + + Sbjct: 61 NVFAQNQLRRDITAVGELEAFSSKTTAIDNLLASEA--NSISQGLSEYFSALQTAADDPT 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + V+ +E + Q T + + + + + E + +S + +N+ I Sbjct: 119 NLASREQVLGKSESLFQRVKTLSDFMIEKEEELNLEFTALVDRANTLISNIGELNEGIVI 178 Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT--SDGTTLFETVPRDI 235 + L++RD + ++S I+GI+ + V + G +L Sbjct: 179 ANGNSTSDQPGALLNERDKAVDELSSIMGINVKESKTQNGAVSINLTSGESLVLENGELN 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290 FE ++ S+ + + S + G + L + RD V+ + Sbjct: 239 LFEVSSNADTASKQLSLQNVFSSEFDEEKSLRIRESDLGGALGGLFRYRDEVLGPAMRDV 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++ + ++++ + + + G I D + I + Sbjct: 299 GQLSIAFADAMNQQNKLGMDLDGQLGGNIFDIPSFRGLPYEDTDGDLIVTGRVTEGKGAE 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L D + + + D VT+ Sbjct: 359 LTDADYKIRVTAVSGGVPTEI--EVTFLNADGTIKKASDGQEIPPETVTISSGFNELPRG 416 Query: 411 LEKNRSD 417 +E + S Sbjct: 417 IEVDFSG 423 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 64/184 (34%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L + S+ A +S +V + + + + P + S + Sbjct: 497 LNTAPSQIRFTAADSYDVLDGTGNVLASVSGTSDLKNLIDQAAITPAPGYDISLDGVPRA 556 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + D N++ + N T + + +G + S Sbjct: 557 GDTFTIEYNTDGFNDNSNALNLADLQNESLVQLSSEATNKPRTFQDAYASMVGRIGGEAS 616 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ + + + GV+L EE + LIK +QSY + +++ ++ T+L Sbjct: 617 MAKVSLASAEAMKVQSENWFQSVSGVSLDEEAANLIKYQQSYAAAARILTTAQELFNTIL 676 Query: 477 EGVK 480 + + Sbjct: 677 QSAR 680 >gi|320530514|ref|ZP_08031572.1| flagellar hook-associated protein FlgK [Selenomonas artemidis F0399] gi|320137347|gb|EFW29271.1| flagellar hook-associated protein FlgK [Selenomonas artemidis F0399] Length = 582 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 64/399 (16%), Positives = 130/399 (32%), Gaps = 18/399 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 S A N N + NI NA Y R+ + + Sbjct: 3 STFAGLNTMVKGIQNNQLSLDTTGHNITNASTPGYSRQSVNSAATNYQERSSLYGDVLVG 62 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V ++ DK + +SA + ++ E + +D N + + + Sbjct: 63 GGVDALSLTRARNIYADKQFWSETSAQNFYKTNKTNYDKVETIF-NDSKNTGILNAMKQF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 D+ + S S+ V+ +V T+A ++Q A E+ +++ + Sbjct: 122 YDAWVNLSNYASDAASRTAVLTKGNNLVDRLRTNANQLQDQIASQYDEMRIQVQKVNSIT 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +++ +N I + + A+D DQRD+L+ ++SEI ++ N V S+G TL Sbjct: 182 EQISRLNKNIMYAETNGAKANDLRDQRDLLVDQLSEITNVNVYEEANGMYTV-VSNGMTL 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 R + E + + + G G +KAL + Sbjct: 241 VNREGR-LTLEMSEPMNNEEYGITDYTIRIKEAGGIGYVPQSGVLKALQDTIVQD-KGYI 298 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + L ++A L+ +F++ + ++ + + G S T + Sbjct: 299 DNLADIAATLLTTFNDVHKQGAGIDADATTWLNFFGDNGNKSTATGGSYTGTHYTWHVDA 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + R + V + + S K Sbjct: 359 ATGERWMEQTAASVNKTVSGTTTTITMTDSVVASDKKKL 397 >gi|206896555|ref|YP_002246691.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] gi|206739172|gb|ACI18250.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] Length = 519 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 47/522 (9%), Positives = 116/522 (22%), Gaps = 47/522 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPEN 49 +L F + + I NI N + Y + Sbjct: 1 MLRSFFNGISGLKVHQIRIDVISNNIANVNTTAYKAARATFSDVVALTLKGARAPYGGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T +Q + + + Sbjct: 61 GTNPSQVGLGVGLATIDNIMTQGPTNNTNRASDLAIQGDGFFVVSDGQRNWFTRDGAFDI 120 Query: 110 SL-------------ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L + +S ++ I + A + + + Sbjct: 121 DLTGRLIQLSTGLKVQGWSMIPTQKIRFGGTVGTASTSFGFRVYDNEGNEHVFTALVQPT 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + + +L + I + ++ Sbjct: 181 PSGSTAAIHIYEGTDTASPNLVLTQTLGFANGVVQAGQTGVLNWNNMSINLDFTSLGMSN 240 Query: 217 MVVYTSDGTTLFETV---------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 V + E PR + + V + N + + Sbjct: 241 ATVSALVADPVVEPDTNKVGDIVIPRSLTIPPTPTTNVQFQGNLNANAPEGANVTFTVSN 300 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + + V ++ + + + + +S+ DG Sbjct: 301 VIDSLGVTHSMLINAVKSASPNTWDVTVSMESASPVQYVVTFDSDGRISDVKKDGQSYGT 360 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG---------YPDLINHY 378 Q N S + + S+ N+ G ++ + Sbjct: 361 TPTIDFDPGNGAQTRQITLNFSAITQYAADSRVVGLVDGNVNGKLLSWFVTDEGKVMGEF 420 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + +A L N W S + + I Sbjct: 421 DNGQIRELAQIALANFQNPAGLSREGNNL--WQNTANSGFRGYVEAGD-LGSLIIRGALE 477 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L EE + LI ++ + S ++I +D++ Q ++ + Sbjct: 478 SSNVDLAEEFTNLIITQRGFQASTRVITTSDEVTQDIIGLKR 519 >gi|149184213|ref|ZP_01862531.1| Flagellar hook-associated protein [Erythrobacter sp. SD-21] gi|148831533|gb|EDL49966.1| Flagellar hook-associated protein [Erythrobacter sp. SD-21] Length = 446 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 74/490 (15%), Positives = 134/490 (27%), Gaps = 59/490 (12%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENV 50 + + A + A +NI NA ++ YVRR S Sbjct: 3 SDLLSIAASGARAARGALDVTAQNIANASSEGYVRRSLRIEEVAASGGAGRIGDISLSGA 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + R + S + + E + I + + Sbjct: 63 RIAEIRRNADAFLQGEVRRTSGDLERANTELRGLRNMESAL----EQSGVFSSIVEFEAA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ + + + VI A + FN +A + E E ++S EL Sbjct: 119 LQQLAGDPVDPSRRAAVIGEATTLANKFNITASSFDAVGEGLQFEAEAQVSETNVIGGEL 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 VN + A D LDQRD LL++++ IST + + V L Sbjct: 179 ARVNLRLTRAGAGSSDRAALLDQRDQLLERLASFTSISTTFEADGTVAVSLGASPPLGFV 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + I S GS G L + + + +L Sbjct: 239 QGGTSGTMSSVEMADGTIGFSI----DGQSVEPGSGSLAGAALGLAE-----LATVRTRL 289 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D +A L G + + + G I + + Sbjct: 290 DTIAATLAGVVNNAQAAGVSLDGSSGQPIFA-----------------------GTTAAG 326 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 LR S + + DP + N + Sbjct: 327 LRVVMSEGAGLATAPAGASANSRDDANLGALRQSLAALDPAQQL----------SNVLFD 376 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + + S GV+L E + LI+ +Q++ S + + Sbjct: 377 VSSKVAGRNVTQSALETIASSARISLEQQSGVDLDTEAANLIRFQQAFQASGRAMQAASD 436 Query: 471 MLQTLLEGVK 480 + TLL + Sbjct: 437 IFNTLLGIGR 446 >gi|163850384|ref|YP_001638427.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens PA1] gi|163661989|gb|ABY29356.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens PA1] Length = 632 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 142/453 (31%), Gaps = 20/453 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L A SS L+ + + ++ + SL++ + N + Sbjct: 63 AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 TV+ A ++ ++A VQ +R+ + ++ + L++L +N I Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232 + + DQRD L +S +I I+ + +++ + V TS G TL + Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242 Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + G + A+ G I A +++RD+V+P Q Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L + S++ + + L T+ V + Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + + +T + Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRNAITAALGGGYT 418 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + + S S + Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+VP G+ A+ + + G + + Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 G D ++L S S + G+ + + + + Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + T ++ ++ + I + + DL + + +++ Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 GVN+ EE+S LI ++Q+Y + +++ M+ TLL Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630 >gi|221069316|ref|ZP_03545421.1| flagellar hook-associated protein FlgK [Comamonas testosteroni KF-1] gi|220714339|gb|EED69707.1| flagellar hook-associated protein FlgK [Comamonas testosteroni KF-1] Length = 648 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 45/375 (12%), Positives = 118/375 (31%), Gaps = 14/375 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + NI N + Y R+ S V T Sbjct: 2 SLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVAT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ A ++A + + + N I+ + ++ Sbjct: 62 ILRNFSELLNRQAAAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S ++ + V+ E+ F +++ ++ ++ +++ +++ + ++ +N Sbjct: 120 SSAPTDSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSQQVAALN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ H +D LDQRD L++ I++ + S + + + ++ L Sbjct: 180 GQISSAIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAA 239 Query: 235 INFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ S ++ G + G+I LLQ +++ + +N L Sbjct: 240 KLSLQESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 M + + + ++ + G + + + S L+ Sbjct: 300 MVISIGDTLNTQNQLGLTLSGKKGGALFNIPMTTTGSTTGAQWTQPDTPTVTVKDSSALK 359 Query: 353 DGGSVSKKFLWNVKN 367 K Sbjct: 360 ASDYKIVFGNDAPKG 374 Score = 87.4 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 49/444 (11%), Positives = 119/444 (26%), Gaps = 19/444 (4%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R NK + + A +I L + + ++ K+ + Sbjct: 203 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 262 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168 E ++Q N E + + I ++ + Sbjct: 263 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNTQNQLGLTLSGKK 322 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224 + N + ++ D V ++ S + I VV SDG Sbjct: 323 GGALFNIPMTTTGSTTGAQWTQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 382 Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275 T L + I+ + + + V +++ + + Sbjct: 383 QTTAFNDLSDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 442 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + ++ + S P S G Sbjct: 443 VSAKINSLGDAAVRMSSLKVEKGFDASTFPPGTTLSFAPDGAGGMTYTITPTPSGVAATG 502 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 I + + G+ + + G + + + + + Sbjct: 503 AYISGQAIELAPGLKVTLTGTPAVDGTTSDTVSFGPNNFYSSDTGNASSFLSLRDAVIFD 562 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + ++ + + S + ++ + GVNL EE + L++ + Sbjct: 563 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAMSGVNLDEEAAKLLQYQ 622 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 QSY S K++ + ++++ V Sbjct: 623 QSYQASAKMLQVAQGIFDSVIQAV 646 >gi|293605003|ref|ZP_06687399.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] gi|292816608|gb|EFF75693.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] Length = 489 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 55/492 (11%), Positives = 123/492 (25%), Gaps = 22/492 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+Q I NI N+ + + V ++ Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKV--AAINQ 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G + + K M D + ++ N L Sbjct: 60 RFTVGTVQGGGGEYDIAIDGAKGMFRLTDQSGAVMYSRNGEFLVDKNNFIVNAQGYRLTG 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + +N + TV A+ Sbjct: 120 YPAGAIGANPVELQLPTANVAPKATATGTTVANLDANAKVVYPTDTVTAPAVDGSVTLGG 179 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + F L N + V + T + + T Sbjct: 180 TPYTFTRDALGALVWSGATPPAGNYGAAPNVVTVDATGAITAGDITQVPGYVNYTAAVTE 239 Query: 246 TSESNPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + +++ + + + N + ++ + G Sbjct: 240 IGRPFDPSVSNSYTNASPMTVFDSLGNSHQVMQYFVKRPADAAGNSVYDVYYTMDGQAMA 299 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 AG F + L + +S ++P + + + ++ Sbjct: 300 PTTEAGGVWGNAQQFTFNKAGALTSAPVVTLSFAQPGGATTPADPLSIAMNYTGTTQYGS 359 Query: 364 N----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 N N+ G L+ Y + + +A + L N Sbjct: 360 NYKLVAKPDGYTSGEFSGINIGGDGSLVASYTNGETQVVGNIVLADFSNLQGLQPVGNN- 418 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 W E + S L + + + V++ +EL +I +++Y +++ I Sbjct: 419 -AWTETSASGQPILGQPGTNGMSRVVGQATEASNVDMSKELVNMIIAQRTYQANSQTIKT 477 Query: 468 TDKMLQTLLEGV 479 D+++Q L+ Sbjct: 478 QDEIMQVLMNLK 489 >gi|227112527|ref|ZP_03826183.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 564 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 141/414 (34%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + A +++ NI N Y R++ + + V V Sbjct: 1 MSNLINTAMSGLKGAQVALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + L A + + +E + ++ + S + I +L+ Sbjct: 61 VSINRQYNEFITNQLRAAQTTSS--SVSAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + +TV+ AE +V F + + ++ + + + +I+ + + + ++ Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSIVGQVNTYTDQIAS 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S +D LDQRDVL+ ++++++G+ V++ V +GT L + Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVDQLNKLVGVEVTVQDGIVYNVALKNGTNLVQA 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + V S S + G + LL R + + QL Sbjct: 239 GTSNELVAIGSSNDPTRLTIGYKDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARGQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + + V G K + + + + Sbjct: 299 GQLALAFADAFNTQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNAGNAVLTPSYTDTKDVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + W V L+ S N I + Sbjct: 359 ATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDNSLNFDGVKMAITGTPATNDSF 412 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/425 (9%), Positives = 115/425 (27%), Gaps = 17/425 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114 + + + + + + + + + P + + ++ Sbjct: 152 RDMDSGLNTQIQSIVGQVNTYTDQIASLNNEITKLMGANSGTMPNDLLDQRDVLVDQLNK 211 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + V + A + N + + + + + + +++ +N Sbjct: 212 LVGVEVTVQDGIVYNVALKNGTNLVQAGTSNELVAIGSSNDPTRLTIGYKDQTNDVVSLN 271 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 ++ + + D ++ ++ N Y +G + Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARGQLGQLALAFADAFNTQHQQGYDRNGVKGGDFFSFG 331 Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +S + P + D V + S G + ++ D+ + Sbjct: 332 KAVVLNDSKNAGNAVLTPSYTDTKDVQATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDN 391 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + G +++ + D I D+ + + L Sbjct: 392 SLNFDGVKMAITGTPATNDSFLLKPVNDVIIDMAVAVSDPNKIAAASVKLDENGAPVLDG 451 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ + + N L N + ++ + +G + Sbjct: 452 SGNPVFGGVSDNTNAKALLALQNEKI--------------VGGKASVSGAYASLVGAIGN 497 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + Q V ++ + GVNL EE L++ +Q Y + ++I + Sbjct: 498 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYMANAQVIKTAQSIFD 557 Query: 474 TLLEG 478 LL Sbjct: 558 ALLAA 562 >gi|308273550|emb|CBX30152.1| hypothetical protein N47_D29610 [uncultured Desulfobacterium sp.] Length = 584 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 50/401 (12%), Positives = 131/401 (32%), Gaps = 17/401 (4%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57 + A + + NI N + Y R++ + V + T R Sbjct: 9 DIANSALSAQRYGIEITSHNIANVNTNGYTRQNPIYEAKLPGSYSNLLLGRGVDISTVRR 68 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + L S + ++++ + E + ++ S ++ +S + + S N Sbjct: 69 ISDQFIENQLMQQKSDLSSYEEMENYMKVLEGIF-NEDSETSMSNMMSDFWNLWQDISNN 127 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + + + ++ NT ++++ + I I N+ + SE+ N I Sbjct: 128 PAGYPERSALYEYSVQLADQLNTLDLSMRQVEINLTNSISSGIGNINQLTSEIAKTNKQI 187 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 S A+D D+R+ L+ ++S I + + ++N + V T+ G L Sbjct: 188 VGME-SASIANDLRDKRNELISQLSGYIDVKSFEQDNGTLTVVTARGCVLVNGNDSSEL- 245 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + +++ + GK+ L +RD ++ +Q +D + + L Sbjct: 246 ----ALGGVNGNKVEWQGSGGSTTDITGYITNGKLGGWLDMRDQILSKYQLDMDSLTKEL 301 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 S +++ + + G + + S + + + Sbjct: 302 AWSVNQQHSQGVGLSTLSTVTGTYGATATNQAMSTASSGLDYYSKVQAGSFNLWVYDADG 361 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + + + + N Sbjct: 362 NVVGTGATPINITAGTTLEDLESAIDLVDVNIDATITTDNT 402 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 14/268 (5%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TL + + S + S N G + ++ Sbjct: 317 TLSTVTGTYGATATNQAMSTASSGLDYYSKVQAGSFNLWVYDADGNVVGTGATPINITAG 376 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + E A L+ + N+ + D Sbjct: 377 TTLEDLESAIDLVDVNIDATITTDNTLKITADNGYTFAFSEDTSNVLAALGINTFFSGSS 436 Query: 346 S------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF--------DPV 391 + + + + + +G D N + + Sbjct: 437 AGDISVNDTISSNMNSIAAARVGSDGSIASGDNSNAISISDLQNTSIPISIWTCDRINGN 496 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + +L +Y + G + + + ++V+F+ IS + V+L EE++ L Sbjct: 497 TEGSVTTSLEDYYHSLAGSIGTASAGVSNSKDFNKVMFDKISGLRDSISAVSLDEEMANL 556 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479 IK +Q+Y + KLI D+ML TLL Sbjct: 557 IKFQQAYTAAAKLISIADEMLDTLLNVK 584 >gi|104782836|ref|YP_609334.1| flagellar hook-associated protein FlgK [Pseudomonas entomophila L48] gi|95111823|emb|CAK16547.1| flagellar hook-associated protein FlgK [Pseudomonas entomophila L48] Length = 681 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 52/446 (11%), Positives = 137/446 (30%), Gaps = 17/446 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N + A ++ NI NAD ++Y R+ + T+ Sbjct: 1 MASLINIGMSGLGAAQSGMYTLGNNIANADVESYSRQQIVQKTKGSQQVGQVFIGTGTTL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + L +S + + + A + T + + + Sbjct: 61 ADVRRVYNSFLENQLRTTTSLS--ADASSYLDQVAPLDKALYGTDTGITAALKSFFTAAQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S +ED + ++ +A+ + + FN + ++ + ++ + ++ + S + Sbjct: 119 DASAKPTEDASRQLLLTSAQTLAKRFNALSAQMNQQNSNINSNMKSIADQVNNLTSTIAD 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I A +D LDQRD +++++++IG+ + R N +Y +G +L Sbjct: 179 YNQQIVRMAAITGQPNDLLDQRDGAVRELNKLIGVDVVEREGNY-DIYLKNGQSLVLGTG 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + T + ++ + + G++ L++ R + N+L Sbjct: 238 TQKLETAPSPTDPTR--MSLVLNRGSTKMDITDSASGGEMGGLIRYRKDTLDPALNELGR 295 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A V+ + + + + G + I + + + N + Sbjct: 296 VALVVSDAINSQLAQGIDKNGEFGALLFGDINSAKAISERSVPKLGNNPAT--GNLNVTI 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V +G + D + + Sbjct: 354 KDTGKLSTNDYQVTFTSGTGYNVRRLPDGKDMGNFDLSTNPPPVIDGFSLALNGGAPSVG 413 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438 + + + + Sbjct: 414 DSFKITPTRNAAGTIDSTLTDPKRLA 439 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 13/317 (4%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + F + + ++ D +D+ +S + S G + T R+ Sbjct: 365 QVTFTSGTGYNVRRLPDGKDMGNFDLSTNPPPVIDGFSLALNGGAPSVGDSFKITPTRNA 424 Query: 236 NFEKMNSYTV------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ T + + G + K+ + S + Sbjct: 425 AGTIDSTLTDPKRLAFAAPLTAVNASGNKGTGLITQPTLTSKLDIYDATQRSDLQAGLKY 484 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVP-------GLFIADGIKDLDNKLCQGISETICVNP 342 + V S + +++ + G Sbjct: 485 STPVKLVFGNETSPQAYTMFDAQGNNIGSGTIVPGQNNKLQLSVPMVDGSGNPINDASGV 544 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q + N G + +G D N + V +++ + Sbjct: 545 QKKFNFEMDITGAPKNGDSFTVSLTGSGSADNRNAQSVIGLQTKSTVEVGADGKGISMTD 604 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + S + + + +S + GV++ EE+ L+K +Q Y S+ Sbjct: 605 AYAKLVSNVGGKASQASMDADATNALQASALDSRNTASGVSVDEEVGNLVKFQQYYTASS 664 Query: 463 KLIMFTDKMLQTLLEGV 479 ++I + TL+ + Sbjct: 665 QIIKAAQETFATLINSL 681 >gi|39995527|ref|NP_951478.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|39982290|gb|AAR33751.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|298504527|gb|ADI83250.1| flagellar hook protein FlgE [Geobacter sulfurreducens KN400] Length = 419 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 42/481 (8%), Positives = 105/481 (21%), Gaps = 63/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + N + + I NI N + + + + + + + Sbjct: 1 MSVTSALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRG 60 Query: 61 NMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + + N Sbjct: 61 VQIQTVENQFTQGSFESTESGTDLAIQGDSFFVVQNTSGRYYTRAGAFSFNKDKTLVNPE 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + I + + I Sbjct: 121 GYQVMGYGIIPSSGLSDGVL-----------------------------------KPIDL 145 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + V+ ++ N S +++++ Sbjct: 146 TNFATTPPKQTSTVKFVVNLDSTQTTPTLAWDPANPVATSNYSTSLSVYDSQGNAHTATV 205 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + + I + GS I L + Q L A+ + Sbjct: 206 YFRKTADNAWDWHVILPDAAAGTPGSTTTP--IDGTLTFDATGALTAQTPLAGAAQNITF 263 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + QY S+ Sbjct: 264 AG-----------------------GVTAPQPIFFDLGVGATTQYASSSVVSSQTQDGYY 300 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + + Y + + +A ++ L + E S Sbjct: 301 QGTLTKVTIDDKGYVNGVYSNGQLQKLYQVALAKFSSTAGLSKAGGTLFE--ETLESGQP 358 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S I + V++ + +I ++ Y+ ++K I D+MLQ +L Sbjct: 359 LFSDASTPGVGKILANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTADEMLQEVLSLK 418 Query: 480 K 480 + Sbjct: 419 R 419 >gi|326204617|ref|ZP_08194473.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325985184|gb|EGD46024.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 443 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 44/478 (9%), Positives = 110/478 (23%), Gaps = 35/478 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + I N+ N + + + Sbjct: 1 MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTFQ----------------EI 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F++ L + + + A +N T + D N ++ Sbjct: 45 FNQTLRGAGAPDAATARGGTNPMQIGLGIAVGSIDNQMTGGSPQRTD-------NPTDLS 97 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + R + + N+ + + +KF T Sbjct: 98 ISGNGFFIVKGSAADTFKFTRAGNFGLDKLGNLVSGDGMNVYGWTKYEQQGDGTVKFDTE 157 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + +KI + G + Sbjct: 158 APIGPINLYSDATNGNKKIIAAKATTYAE----------FSGNLNSAQKAVATPPATPPA 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 D + + K + D + Sbjct: 208 SDEQFIMPYTVFDSLGNAHEMTLTFTKAAPTGTPPTTTWTYTLAAKAGDGTVPIPTTGTL 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + D + I + ++ Q+ + S + Sbjct: 268 KFDGEGK-LTSDTVNSIKVTMTPTAGANPFDVTLDFKKLTQFSGDSSVKPSNINGYTTGN 326 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ + Y + + +AG + L + N N D + Sbjct: 327 LVTFNIGSDGMITGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNLFMPT-TNSGDFNKGV 385 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +S V+L E + +I ++ + ++++I +D+MLQ L+ + Sbjct: 386 PAGSQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 443 >gi|332311130|gb|EGJ24225.1| Flagellar hook-associated protein 1 [Listeria monocytogenes str. Scott A] Length = 494 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 74/507 (14%), Positives = 153/507 (30%), Gaps = 54/507 (10%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSENKN 61 + A +NI N + Y+R+ T + V V + Sbjct: 1 MSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVKVTDIKRLTNT 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + + N P+ + + + +KN + Sbjct: 61 ALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQA 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 ++ + N ++++ + + I +L + +L +N AI Sbjct: 120 TNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GN 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 178 AGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS-- 235 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T T+ +DG ++ +P+G I A +++ + + +Q +++ + L + Sbjct: 236 --TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNSLAKAL 287 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-------CVNPQYRSNPSFLRDG 354 + N I D +K N + + + Sbjct: 288 DDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRLLEKFPGVTRSGDTLTIGGV 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----------------- 397 + I + S K + + N Sbjct: 348 DHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASLKTD 407 Query: 398 -----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 T + I + + S S N +SES S+ GVN+ EE++ ++ Sbjct: 408 KNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIM 467 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + Y + K + + M++ LL + Sbjct: 468 QYQSYYVANTKAMNTVNDMMKALLAML 494 >gi|89067517|ref|ZP_01155030.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89047086|gb|EAR53140.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 433 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 49/489 (10%), Positives = 128/489 (26%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55 M++ + N + + + A+I NI N+ Y R T + Sbjct: 1 MTISSSLNASVAGLTANASRLATIADNIANSSTFGYKRATTDFHSMVLNTTEGTYSAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSL 111 R + + D+ + + + + + + + + R Sbjct: 61 RVTTQRLIDQRGSIVSTDNVTDLAVRGRGMMPVSTEAALGTGNASSQFLLTSTGSFRVDD 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y + S IL V +A +Q IR +A++ + + L+ Sbjct: 121 QGYLASQSGLILMGWPAGIDGNVPAFPRDTADGLQPIRINANQSAGEATTYIDVGLNLPA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + I+ + +N Sbjct: 181 TSTEFSSTGEPEELTVAYYDNLGTSETLSITFTPTVPAAGSSNEW--------------- 225 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + +T ++ + G + G + ++ + ++ Sbjct: 226 ----------TMQITDSASAGAVVGEYTLVFDDTRGAGGTLASITPVSGGAYDPVTGRVT 275 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ G+ Q N + + Sbjct: 276 VNVEG-----------------------------GPLEVGLGLLGEPGGLTQLSDNFAPV 306 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + ++ + + +K P+ ++ L + + Sbjct: 307 SILKDGNAVGSMTSIDIDANGFMRAAFDTGISKVIYQIPLVDVSNVNGLETLDQQ--TYR 364 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S S+ L + ++ EL+ LI+ +++Y+ + K+I D+M Sbjct: 365 ATPESGSYFLWDAGDGPTGDLLSYALEESATDVAGELTELIQTQRAYSSNAKVIQTVDEM 424 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 425 LQETTNIKR 433 >gi|218528944|ref|YP_002419760.1| flagellar hook-associated protein FlgK [Methylobacterium chloromethanicum CM4] gi|218521247|gb|ACK81832.1| flagellar hook-associated protein FlgK [Methylobacterium chloromethanicum CM4] Length = 632 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 143/453 (31%), Gaps = 20/453 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L A SS L+ + + ++ + SL++ + N + Sbjct: 63 AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 TV+ A ++ ++A VQ +R+ + ++ + L++L +N I Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232 + + DQRD L +S +I I+ + +++ + V TS G TL + Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242 Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + G + A+ G I A +++RD+V+P Q Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L + S++ + + L T+ V + Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + + + +T + Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRSAITAALGGGYT 418 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + + S S + Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+VP G+ A+ + + G + + Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 G D ++L S S + G+ + + + + Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + T ++ ++ + I + + DL + + +++ Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 GVN+ EE+S LI ++Q+Y + +++ M+ TLL Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630 >gi|325923280|ref|ZP_08184953.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC 19865] gi|325546207|gb|EGD17388.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC 19865] Length = 624 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 125/408 (30%), Gaps = 16/408 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLTNRVDSLYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNNGLTSSVDEVNRLTQQIAKIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTIGNSVDNASP--DLLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G++ LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVALQTQGQNVSLSANS--LGGQMGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + + ++ Sbjct: 296 VGMASTFNAGHAQGMDLYGAMGGNFFNIGSPTTAANPKNTGTAALSASFSNMSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 W + S + + V+ + Sbjct: 356 TLSFDGAAWKATRADTGAAVPITGTGSTGDPLVLNGVSLVVGGTPANG 403 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 112/446 (25%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + + + ++ D+ S +G + Sbjct: 179 NGTIGNSVDNASPDLLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQALVVGTTAAK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPTKLQVALQTQGQNVSLSANSLGGQMGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S ++ + A+ + + ++ +S +S + N + Sbjct: 299 ASTFNAGHAQGMDLYGAMGGNFFNIGSPTTAANPKNTGTAALSASFSNMSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + + S N + + +N + + I Sbjct: 359 FDGAAWKATRADTGAAVPITGTGSTGDPLVLNGVSLVVGGTPANGDKFLLQPTAGLAGSI 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATLANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + + ++ + D A Sbjct: 479 GNGPFPYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLAKVEDAKALN 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAADMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|291534845|emb|CBL07957.1| flagellar hook-associated protein FlgK [Roseburia intestinalis M50/1] Length = 613 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 67/444 (15%), Positives = 135/444 (30%), Gaps = 36/444 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49 S A + + + NI N K Y ++ Sbjct: 3 STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + +D + S++G ++ E DD + + ++ + + Sbjct: 63 VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L++ N + + I +A+ FN+ A + I+ +A++EI+ + N+ + Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218 + +N I A++ DQR +L+ ++SEI+ + Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSEIVPTEAEELPVQNSNDPELPTGANYF 242 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274 G L +T + V D S G++ G +KA Sbjct: 243 TVKIGGQVLVDTYDYETLKCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302 Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L IRD + ++ + + P +G + Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + S T + S DG S + + Y +N + SF Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSL 422 Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409 F + G + + +Y G Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + TL + + S Q S Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389 Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G ++ D+ VP + +Q+++ R F++ + + + + Sbjct: 390 DGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449 Query: 328 NKLCQGISETICVNPQYRSN----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + N ++ S + K + Sbjct: 450 VTGEEYVLGKSDKNHGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKADTEEGVD 509 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + + I + + S + + Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GV+ EE LIK + +YN+S+K+I ++ L+E Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609 >gi|209884510|ref|YP_002288367.1| flagellar hook-associated protein FlgK [Oligotropha carboxidovorans OM5] gi|209872706|gb|ACI92502.1| flagellar hook-associated protein FlgK [Oligotropha carboxidovorans OM5] Length = 624 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 72/445 (16%), Positives = 146/445 (32%), Gaps = 18/445 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55 M L A + A + N+ N + YVR+ V V Sbjct: 1 MGLTQALATAMSGLRANQAALALVASNVSNIETPGYVRKSLNQAQTTTGTGSSGVIVTGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 E K + +S + + + + D N + + L +L++ S Sbjct: 61 NRELNVYVQKQVLTETSGASYATTMSNALQRLQGIYGDPGSNTTLEAAFNALTAALQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 T ++ A+ + Q N+++ +Q +RADA+ I+ + + ++ +N+ Sbjct: 121 VTSDSPAARSTAVNAAQSLAQMLNSTSAGIQSLRADAESAIKSSVDAANNAMRQIATINN 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + T A LDQRD + ++S+++ I + N + V+T+ G L + I Sbjct: 181 QLLGTTGDDAAAASLLDQRDQYITQLSQLMDIRVLTNERNQVTVFTNSGVQLVGSEASTI 240 Query: 236 NFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +F+ + T + N F G + ++ G I A L++RD + Sbjct: 241 SFDAQGTVTPNTAWNSDPSISTLGTLTLTFPHGGDIDLIATRSIRSGAIAANLELRDETL 300 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 Q Q+D++A + + S+K + P F D + Q N Sbjct: 301 VQAQAQIDQLAAAMASALSDKVTPGTKDDGPPANFTLDLTGLQNGNKVQFSYTDTTTNTT 360 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + D V + I+ + + G Sbjct: 361 RTITLVRVDDPS-VGALSNTATNDPNDEVFGIDFSGGMASVVSQLTGLLGSRGLSFANPA 419 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVV 428 + + + + + S + Sbjct: 420 GPGDLLNISGDAGGATVVGSASSTI 444 Score = 74.7 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 70/249 (28%), Gaps = 6/249 (2%) Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + E I G + S G + D Sbjct: 376 LSNTATNDPNDEVFGIDFSGGMASVVSQLTGLLGSRGLSFANPAGPGDLLNISGDAGGAT 435 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++GS S I + P L + S + L S Sbjct: 436 VVGSASSTITIRDLAGGDPQLPLFVDNGVPYTGAITATGSQQTGLAARISVNNLLLADPS 495 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGW 410 + AG ++ + + + T+L + + Sbjct: 496 RMVIYNTTPTTQAGDTTRVDFILSQLTQGSYYVSPQTGIGSSATPFKGTMLGFLQQFTTM 555 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + L VV + + + T GVN+ EE++ L+ ++ +Y+ + +++ Sbjct: 556 QGQAAASAKQLADGQNVVLSTLQNKLNATSGVNIDEEMAHLLALQNAYSANARVMSTVKD 615 Query: 471 MLQTLLEGV 479 M +LL + Sbjct: 616 MFDSLLRSM 624 >gi|240145382|ref|ZP_04743983.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] gi|257202503|gb|EEV00788.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] Length = 613 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 66/444 (14%), Positives = 135/444 (30%), Gaps = 36/444 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49 S A + + + NI N K Y ++ Sbjct: 3 STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + +D + S++G ++ E DD + + ++ + + Sbjct: 63 VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L++ N + + I +A+ FN+ A + I+ +A++EI+ + N+ + Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218 + +N I A++ DQR +L+ ++S+I+ + Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSKIVPTEAEELPVQNSNDPELPTGANYF 242 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274 G L +T + V D S G++ G +KA Sbjct: 243 TVKIGGQVLVDTYDYETLKCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302 Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L IRD + ++ + + P +G + Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + S T + S DG S + + Y +N + SF Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSL 422 Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409 F + G + + +Y G Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + TL + + S Q S Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389 Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G ++ D+ VP + +Q+++ R F++ + + + + Sbjct: 390 DGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449 Query: 328 NKLCQGISETICVNPQYRSN----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + N ++ S + K + Sbjct: 450 VTGEEYVLGKSDKNHGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKADTEEGVD 509 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + + I + + S + + Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GV+ EE LIK + +YN+S+K+I ++ L+E Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609 >gi|85058017|ref|YP_453719.1| flagellar hook-associated protein 1 FlgK [Sodalis glossinidius str. 'morsitans'] gi|84778537|dbj|BAE73314.1| flagellar hook-associated protein 1 FlgK [Sodalis glossinidius str. 'morsitans'] Length = 556 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 59/365 (16%), Positives = 130/365 (35%), Gaps = 14/365 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 +L ++ A + Q + I N+ NA N Y R++ + + V V Sbjct: 1 MLNLYYIASSGLQTGQQALSVIGNNLANATNPYYSRQNIILGAAGGRVTSTGHIGNGVRV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 ++ + + + + ++ + +N ++ L ++L+ Sbjct: 61 EGVARAFDEYANERVRGTETLLRASSAHYDKMSSLDLEFSRT--DNGIDTKLNSLFNALK 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S + +E+ FN + E+ K +++I ++N+ + +L Sbjct: 119 DISTVPKNSNYRSSAFTALKELTGRFNKLSDELSKQEQKNNQDIRQSVNNINQLTGQLAS 178 Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFET 230 +N I + + A+D LD+RD LLQ +S+ GI+T I + V S+G L Sbjct: 179 LNREISNRQSIDGGGAYDLLDRRDALLQALSQQTGINTQIDSRTGAVNVTLSNGHMLVSG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++ + + Q S + KG + LL + +P +++L Sbjct: 239 DKANALEVTTDNNNPGRQVIAYRDAENAIIPLQDSLLDKGVLGGLLAFHNQDLPEIRDRL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +E+A L F++ + + G + + E ++P Sbjct: 299 NELALHLSNRFNQVNKQGYDDNGKEGEDLFSYALPNSIANGRNQGEASLSVTGLNTDPDA 358 Query: 351 LRDGG 355 + Sbjct: 359 VGGVA 363 >gi|95929857|ref|ZP_01312598.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95134153|gb|EAT15811.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 548 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 55/556 (9%), Positives = 131/556 (23%), Gaps = 84/556 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M + + + N + NI N++ + T+ + + + Sbjct: 1 MGIQSSLFSGVSGLNANGNALTVLGNNIANSNTIGFKSSRTIFSDLLSAEIAGSGGASQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + S F + + + Sbjct: 61 GRGAGLSTVDNIFSQGTFETTESNTDLAIEGPGFFMVSD-----PGEASIYYTRAGAFNF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 N + +++A E V + E + +NL Sbjct: 116 DETGTLVNPEGYAVQGYYLNDAGETVGDLTDLTIETRSFSPANPTTKISLATNLNANDPY 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR----NNNDMVVYTSDGT 225 L DA+ + + + ++T NN V + Sbjct: 176 LGTQGDAVSPFDVNDPADTSNYASSVRIFDSLGREHLVTTYFNKLDPENNPDGVMQWESH 235 Query: 226 T------------------------------LFETVPRDINFEKMNSYTVTSESNPIF-- 253 T L + + + + Sbjct: 236 TVVSESEVESPAKIAADDAALELAKATEVTALADLTAAQTALDADPTNAALIAARDAAQT 295 Query: 254 ----------------IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 D V V + S G++ +L + D++ + + Sbjct: 296 AYDAANAALQTAEIDAADWVEVGRSILSFDTGGRLVNVLDVSDTISDGPLPDSERVYDPD 355 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC-------------QGISETICVNPQY 344 + + + P D + I QY Sbjct: 356 GNLYVTSNTTDPDGNYYPLTTDVDLKVPQPTASTVSGALSWINEAEDTQAVDIIFDATQY 415 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S + + +++ +Y + + +A + V L + Sbjct: 416 SSESDVISQTQDGYATGTLVSLTVDNDGNILGNYSNGEPRKLARIALAKFSNPVGLAKAG 475 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + + S + + V I + V+L +E +I ++ + ++K+ Sbjct: 476 NNL--YEATDDSGTAIVGTVGSGV-GKIFTNSLEMSNVDLAQEFVKMITTQRGFQANSKI 532 Query: 465 IMFTDKMLQTLLEGVK 480 I TD++L L+ + Sbjct: 533 ITTTDELLGELINLKR 548 >gi|238919259|ref|YP_002932774.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146] gi|238868828|gb|ACR68539.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146] Length = 424 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 116/476 (24%), Gaps = 57/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS Q I NI N+ + + S +++ Sbjct: 2 GFSQAISGMNAASTQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKIGLGVKVASVDQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + A+ Q F ++ + + + + N Sbjct: 62 KDGATTTTNRALDVAISGQGFFRMQ------APNGSVNYSRNGQFTKDAKGFLTNAQGLY 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + +++ + S + + Sbjct: 116 L------------TGYPAAGTPPTIQQGADPVPLQIPTGLMPAKASTEGTMVLNLNSADK 163 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +V + + + N ++M +Y G E Sbjct: 164 AIDSTKLKFDPTNVNSYNYATSMTTYDSLGNVHNMNLYFVKGKP--EEKDITTGTPPKIE 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + ID S+ + I AL + + L Sbjct: 222 KVMATPWHIYSID----SAESPAPKTFTSIGALEFDSNGELLKGTAPL------------ 265 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + K Sbjct: 266 ----------------TLKMVASNGALAQDFTLNFTGTRQQNTGKDGVSAKTQNGYKAGE 309 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L N W E +S + Sbjct: 310 LTGYQINDDGSITGSYTNQQKQLLGQIVMANFADPEGLTSEGNN--EWSESAKSGQPIIG 367 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ V+L ++L +I +++Y + + I D++LQTL+ Sbjct: 368 TSGTSGLGTLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 423 >gi|126730121|ref|ZP_01745933.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] gi|126709501|gb|EBA08555.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] Length = 435 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 52/489 (10%), Positives = 128/489 (26%), Gaps = 63/489 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ + N + + + A+I NI N+ + Y R +T + + T + Sbjct: 1 MTISSSLNAGVAGLSANATRLATISDNIANSATQGYKRVETEFSAMVTSGNSGTYTAGGV 60 Query: 61 NMFDKVLH-------AHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTHYISKLRDSL 111 L ++A F + + + A + + R Sbjct: 61 RTQTNRLVAEHGALVTTNNATDLAVRGTGFLPVAQATEVLAGNGNPQMFMTTTASFRLDA 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E Y + S +L + + ++ ++ I+ ++ + + + ++ Sbjct: 121 EGYLRTESGLMLLGWRANADGSIPNLARDTSASLEPIQIALNQYLSEPTTAITMGVNLPA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 A A + F + ++ + +N +V T + Sbjct: 181 TETTAGAAGDALELPIEYFDNLGRSESLNVTFTPTVPATGSSNEWTMVITDSASGGAIIG 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + F+ S T S I +V +++ + Sbjct: 241 DYTVTFDNTPSAGGTLASVSAPISAGGAYDGVAGSVVVNAAGGPIELSIGQL-------- 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 T Q + + L Sbjct: 293 --------------------------------------------FTNNGLTQRSDSFAPL 308 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S + + ++ + P+ + ++ + Sbjct: 309 NIAKDGSPAGNMTSVEVDESGRVYAYFDTGASAVIFQIPLVDVPNPNGMIALNNQL--FQ 366 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S S L I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 367 PSAESGSFFLWDAGDGPTGEIVPYAREESTTDVAAELTDMIQTQRAYSSNAKVIQTVDEM 426 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 427 LQETTNIKR 435 >gi|240137460|ref|YP_002961931.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium extorquens AM1] gi|240007428|gb|ACS38654.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium extorquens AM1] Length = 632 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 142/453 (31%), Gaps = 20/453 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L A SS L+ + + ++ + SL++ + N + Sbjct: 63 AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 TV+ A ++ ++A VQ +R+ + ++ + L++L +N I Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232 + + DQRD L +S +I I+ + +++ + V TS G TL + Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242 Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + G + A+ G I A +++RD+++P Q Sbjct: 243 RGTLSANALYATDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTMLPQAQ 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L + S++ + + L T+ V + Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + + +T + Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRNAITAALGGGYT 418 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + + S S + Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+VP G+ A+ + + G + + Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 G D ++L S S + G+ + + + + Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + T ++ ++ + I + + DL + + +++ Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 GVN+ EE+S LI ++Q+Y + +++ M+ TLL Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630 >gi|254559638|ref|YP_003066733.1| flagellar hook-associated protein 1 FlgK [Methylobacterium extorquens DM4] gi|254266916|emb|CAX22715.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium extorquens DM4] Length = 632 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 70/453 (15%), Positives = 143/453 (31%), Gaps = 20/453 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L A SS L+ + + ++ + SL++ + N + Sbjct: 63 AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 TV+ A ++ ++A VQ +R+ + ++ + L++L +N I Sbjct: 123 TAARATVLSAANDLAARIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232 + + DQRD L +S +I I+ + +++ + V TS G TL + Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242 Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + G + A+ G I A +++RD+V+P Q Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L + S++ + + L T+ V + Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + + + +T + Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRSAITAALGGGYT 418 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + + S S + Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+VP G+ A+ + + G + + Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 G D ++L S S + G+ + + + + Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + T ++ ++ + I + + DL + + +++ Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 GVN+ EE+S LI ++Q+Y + +++ M+ TLL Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630 >gi|221636048|ref|YP_002523924.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] gi|221157294|gb|ACM06412.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] Length = 423 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 44/478 (9%), Positives = 117/478 (24%), Gaps = 55/478 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + I NI N + + T + Sbjct: 1 MMRSMFSAISGLRAHQTWMDVIGNNIANVNTTGFKVGRVRFTD----------------I 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +++ S L+ + A ++ + S+ Sbjct: 45 LSQLVRGASGPT---ETRGGINPLQIGLGAVVGAVDTIHTQ------GALQLTGKPSDLA 95 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + Q T + SN L N + Sbjct: 96 IQGDGFFVVSDGSQTLYTRDGAFDI----GSDLRLVNPSNGFYVLGWQADANGNVDTAGP 151 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 Q D + + + + + ++ +++ + F + Sbjct: 152 VGPITIPIGQQLDAVPTT-QITVQGNLNANQDPAATPHFVTKVSITDSLGKRHEFYILFD 210 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T+ N + +++ P + + + ++A I + Sbjct: 211 KVGTNTWNYTLQEDDPRTTSTTEDDPDFALGGTPS---GTLVFDADGNLDLAASNISAVD 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G S + + + + Sbjct: 268 LDSTAGGASSITVTPDFSRLTQLAAPYSA--------------------NAAANGAPAGS 307 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ Y + K +A L++ N +L S + Sbjct: 308 LTTFTVSQSGQVLGIYSNGVTKVVGQIALALFTNPGGLMKVGGN--AYLPTVNSGEPIVG 365 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ Y V+L +E + +I ++ + ++++I +D++LQ L+ + Sbjct: 366 PADSGGRGKIASGYLEMSNVDLAQEFTSMIMAQRGFQANSRVITTSDEVLQELVNLRR 423 >gi|46578723|ref|YP_009531.1| flagella basal body rod domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603713|ref|YP_968113.1| hypothetical protein Dvul_2674 [Desulfovibrio vulgaris DP4] gi|46448135|gb|AAS94790.1| flagella basal body rod domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563942|gb|ABM29686.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232595|gb|ADP85449.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1] Length = 498 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 41/500 (8%), Positives = 122/500 (24%), Gaps = 24/500 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPEN---VTVVT 54 ++ ++ + N+ N + + + +D M+ P V+ ++ Sbjct: 1 MMHGLYTGATGMRTQAEGMNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGIS 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 Q + D + A+ F + ++ R + + Sbjct: 61 QVGLGARVGDVRVLRSQGALLAGSDTTDFAISGKGFFQVTSGQDTHYTRAGNFRFNKDGQ 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + L I E T ++ + K S + + Sbjct: 121 LVDPNGFNLMGHAITGETEGPLAAVTLVKDADGRLSMPAKATGGMTSVFNLGFDKDASSS 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A F + ++ + + + +++ + + TT + Sbjct: 181 TANPFFGMLEAWDGTATPPLGDNAAGYTQTMRVYDAAGDTHELTIRFDNATTAGGKRYVE 240 Query: 235 INFEKMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + + + VP Sbjct: 241 FLVTMPPGEDGGAAAGSAGAGLLMSGTLQFGSSGQLQDIMAFTPSGGDPKDLANWVPATL 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN------ 341 + + + + + L + Sbjct: 301 DASGRPQFNATFAQGGAQTVGLDLGITTTAWNNAPASAAGVGLDPTLLGGATTPKLAATS 360 Query: 342 -PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Y+ + S + + +A + Y + +++ P+ + L Sbjct: 361 TTAYKGSSSSTYMKQDGYAEGVLMNLEVATDGIVSGKYSNGQSQSLFRVPIFRFTSEDGL 420 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + S + + + V++ E+ +I ++ + Sbjct: 421 RS--EGMNHYSATTESGAAQEGKADTENYGKLMGKSLEQSNVDMAREMVNMIVTQRGFQT 478 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K++ D M+Q LE + Sbjct: 479 NSKVVTTADTMIQKALELKR 498 >gi|78047580|ref|YP_363755.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927969|ref|ZP_08189190.1| flagellar hook-associated protein FlgK [Xanthomonas perforans 91-118] gi|78036010|emb|CAJ23701.1| flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541654|gb|EGD13175.1| flagellar hook-associated protein FlgK [Xanthomonas perforans 91-118] Length = 624 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTPERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLVTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTTWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/446 (8%), Positives = 114/446 (25%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + + ++ + ++ +A+ + Sbjct: 239 LVTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S S+ + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + + + + + N + + ++ + + + Sbjct: 359 FDGTTWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTVFQAILGAVR 624 >gi|307131603|ref|YP_003883619.1| flagellar hook-associated protein flgK [Dickeya dadantii 3937] gi|306529132|gb|ADM99062.1| Flagellar hook-associated protein flgK [Dickeya dadantii 3937] Length = 640 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 71/437 (16%), Positives = 159/437 (36%), Gaps = 15/437 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N + + A +++ NI N Y R++ + + VTV Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVTGYSRQNALLAQNNGTNISAGYIGNGVTV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + + K L A + S + + + + + + I +L+ Sbjct: 61 VSINRDYNDFIAKQLRAAQTTSSSTTSYYSQISKIDNLLSSSSSSL--STTIQDFFKNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S+ + +TV+ AE +V F + + ++ + ++ + EI + ++ + + ++ Sbjct: 119 NLTSNSSDSSVRQTVLGKAEALVNQFKIADQYLRDMDSNINGEISITVTQVNTYAKQIAD 178 Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I + +D LDQRD L+ +++++G+ V++ + V +G TL + Sbjct: 179 INDQIVRLKGANNGAAPNDLLDQRDNLVNDLNKLVGVDVAVQDGDVYNVSLKNGLTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + S + S + G + LL R S + +NQL Sbjct: 239 KSYNTLVATQSSTDPTRTTVSYNDAIAGASEVKESTITGGSLGGLLSFRTSTLDSARNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +MA +F+++ + N G + K + S T + Y S+ Sbjct: 299 GQMALAFADAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNTSAT-ELTSSYLSDTYS 357 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 ++ G+ + A D F + +G + + Sbjct: 358 MQYNGTSWSVTRSDGTTAASTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSAISQT 417 Query: 411 LEKNRSDSHDLHMKSQV 427 + + L Sbjct: 418 APTGSTSAASLTRNDTN 434 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 43/347 (12%), Positives = 84/347 (24%), Gaps = 4/347 (1%) Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 ++ Q A + + + S +T+ + T Sbjct: 296 NQLGQMALAFADAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNTSATELTSSYLSDT 355 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 S T + T DG T+ + + + Sbjct: 356 YSMQYNGTSWSVTRSDGTTAASTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSAIS 415 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 S+ + IKA V P N S A + Sbjct: 416 QTAPTGSTSAASLTRNDTNYIKASDYSVKFVGPSANNWSVTRLSDGADLSSSATYTAASG 475 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 L D+ T + S S ++ + G Sbjct: 476 STSASLIFDGMKLDISGTPAAKDLFTAKGVRDVIVDMSVKVTDSSKIAAAGVSLTSTGGG 535 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + ++ + + +G + S + + V + Sbjct: 536 VSDNTNAKALLNLQTTKV----VENKSSVSQAYASLVGDIGNKTSTAKVTDTSQKNVVSQ 591 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + GVNL EE L++ +Q Y + K+I + LL Sbjct: 592 LTTEQQSVSGVNLDEEYGDLVRFQQYYMANAKVIQTASTIFDALLAI 638 >gi|47091667|ref|ZP_00229463.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes str. 4b H7858] gi|47019986|gb|EAL10723.1| flagellar hook-associated protein 1-related protein [Listeria monocytogenes str. 4b H7858] Length = 494 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 74/507 (14%), Positives = 154/507 (30%), Gaps = 54/507 (10%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSENKN 61 + A +NI N + Y+R+ T + V V + Sbjct: 1 MSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVKVTDIKRLTNT 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + + N P+ + + + +KN + Sbjct: 61 ALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQA 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 ++ + N ++++ + + I +L + +L +N AI Sbjct: 120 TNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GN 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 178 AGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS-- 235 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T T+ +DG ++ +P+G I A +++ + + +Q +++ + L + Sbjct: 236 --TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNSLAKAL 287 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------QYRSNPSFLRDG 354 + N I D +K N + + + + Sbjct: 288 DDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTIGGV 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----------------- 397 + I + S K + + N Sbjct: 348 DHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASLKTD 407 Query: 398 -----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 T + I + + S S N +SES S+ GVN+ EE++ ++ Sbjct: 408 KNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIM 467 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + Y + K + + M++ LL + Sbjct: 468 QYQSYYVANTKAMNTVNDMMKALLAML 494 >gi|238916198|ref|YP_002929715.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] gi|238871558|gb|ACR71268.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] Length = 646 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 112/342 (32%), Gaps = 21/342 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PE 48 A A + N+ N + Y R+ + + Sbjct: 6 AGLFIGTTGLKTAQTALNTTAHNLSNINTSGYTRQQVTFSDTQYVRVNTSDKVSSPDYGL 65 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V R D+ +S +G E + + Y+ L Sbjct: 66 GVAVSEVRRIRDQFIDQAYRNENSRLGFYESQYKAIEEIEDQFG-EMQGVTYESYLINLY 124 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +S+ +KN + + ++I NA ++ + ++ + + +++ + ++ + Sbjct: 125 NSVNELAKNPTSTVARSSLIQNATAFIEKSENVYKGLKDYQTTLNTQVKNMVDSINKLGD 184 Query: 169 ELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 ++ +N I ++ DA+D D+RD + ++S+ I I+ ++ ++V+ + Sbjct: 185 KIYTLNKKISKIESTGIEDANDLRDERDAAIDELSKYIDITYYENDSKEVVISAEGIPFI 244 Query: 228 FETVPRDINFEKMNSYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 ++ + + + P + + + ++ KG++K LL R ++V Sbjct: 245 TMGELAKMDTRVVEGTNLVIPTWPGYERDVYDLSTEASNVDDTDKGELKGLLIARGNMVV 304 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + + + + A + Sbjct: 305 DYTVVPEAPSSSDYDMSTADGRAAYQEAYNKYYKAQEYYNTY 346 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 70/261 (26%), Gaps = 3/261 (1%) Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + DGT + + + + + +G S Sbjct: 383 NNPYMAPDGTEIQADIYTYNSVSQQVLFDRYGREVTGTDNGDGTYSFSSGEKLYMSFGGA 442 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 DS + + + + + ++ Sbjct: 443 EVPVDSYTYSMLDMDKTGYG--MDDDKTVGTELFSRKGTDRYIKTTDDSGKTIYIRNNLN 500 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ET + N + K + D D++++ F Sbjct: 501 ETDYESLYKLGNLQINPEAAQNVGKIPLSTVQGKEDFDRAKELVDAWDEKFASLNPDTYA 560 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + + + N IG + + + + GV+ EEL +IK + Sbjct: 561 KSD-FMTFYNNFIGEYATLGKALGNYVSNQTTMVDGYDNQRLQSEGVSSDEELEKMIKYQ 619 Query: 456 QSYNISNKLIMFTDKMLQTLL 476 Q+YN +++ + ++ML+ L+ Sbjct: 620 QAYNAASRYVNVVNQMLEHLV 640 >gi|160880840|ref|YP_001559808.1| hypothetical protein Cphy_2708 [Clostridium phytofermentans ISDg] gi|160429506|gb|ABX43069.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 479 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 36/494 (7%), Positives = 106/494 (21%), Gaps = 31/494 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ + + I NI N + + + Sbjct: 1 MMRSLYSGVSGLRVHQTKMDVIGNNISNVNTVGFKASSATFSDILYQTTKSASGPNPNTG 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + + + + ++ + Sbjct: 61 TAGTNAMQIGLGANLASITASITKTGGSQRTDNPFDLMIEGDGFFVVNNGVGNFFTKAGS 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + + + + E Sbjct: 121 FNVDAAGTLCTPTGATVMGWQPSREDPRKTVPGSVSPLRIMSPENLYSAPEATTDIYLHG 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + N D L + + I + +D V + Sbjct: 181 NIDSMDTNLTSSTGRIVNMSF------FDNLGNSYTAEVKIKQSEDSKSDYKVTIQNIYD 234 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 ++ +T E++ I + + G I+ D Sbjct: 235 KKGDSIFAKKVVDPDTGDITYEASNITDFNFGNGTGSVTVNDDGTIEVDCDEIDLKFNGA 294 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + S K + + + + I + N E+ + Sbjct: 295 NGNFVSVGDDADNATSIKFKVNADPDPFKDVNIDFSSITMYNNSGTTTVESTKGAKADGT 354 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 G+ + ++ + Y + K VA + L N Sbjct: 355 --------GAGKAAGNMSGISIDQQGMIFGTYDNGDRKLLGQVVVATFSNPAGLEAIGNN 406 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + V+L ++ + +I ++ + ++++I Sbjct: 407 MFSATPNSGEFNGVGEDITSSG-GKFITGVLEMSNVDLSQQFTEMITTQRGFQANSRIIT 465 Query: 467 FTDKMLQTLLEGVK 480 +D +L+ L+ + Sbjct: 466 TSDTLLEELINLKR 479 >gi|300870953|ref|YP_003785824.1| flagellar hook associated protein FlgK [Brachyspira pilosicoli 95/1000] gi|300688652|gb|ADK31323.1| flagellar hook associated protein, FlgK [Brachyspira pilosicoli 95/1000] Length = 637 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 134/400 (33%), Gaps = 28/400 (7%) Query: 1 MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43 MS + F + N NI N K Y R+ + Sbjct: 1 MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEEPSLNRA 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + T D + + G + ++ E + ++ + + Sbjct: 61 ERAGQIGQGAEITTIERLRDKFIDSKIMVELGSDGYWKTKNNYLQQLEAIY-NEPGDYNL 119 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + D+ + S N +E T+++ A+ + +FN ++ +R + + +E ++ Sbjct: 120 RNDLDAFWDAWQEMSVNPAERGTRMTLVERADRINNSFNQMYNQMDSMRNNLNSLVENKV 179 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + +N AI + A +D LD+RD+LL ++S + + + ++ ++Y Sbjct: 180 NRINDIANSIRSLNTAIVKQEALGQSPNDLLDKRDLLLDELSSLANVDIKSIDPDETMIY 239 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + V ++ E+ S N D + + + G++KALL++RD Sbjct: 240 IGSRSLIQGNVVNKLSLER-------SALNEGMFDVYWENDHVQLNLDGGELKALLELRD 292 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 N LD +A L S +E G+ K + + Sbjct: 293 VDTVDAINDLDTLAMNLADSVNEIHRSGFGLNQETGVDFFTMNKQTPSVIGNYDLNNDGT 352 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + ++ + + G Sbjct: 353 EDSTIMFKVSGVNSVDINASIGSSGTLVFGSKTREGADVA 392 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 38/336 (11%), Positives = 97/336 (28%), Gaps = 6/336 (1%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D D ++ +N + F T +K + I Sbjct: 300 NDLDTLAMNLADSVNEIHRSGFGLNQETGVDFFTMNKQTPSVIGNYDLNNDGTEDSTIMF 359 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 N+ D+ TL + YT + + +N + + Sbjct: 360 KVSGVNSVDINASIGSSGTLVFGSKTREGADVAIDYTAQMKVGELIDKINSSDANVSAYL 419 Query: 268 PKGKIKALLQ--IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L D + P + + E + + S +G + + Sbjct: 420 DDNNRLVLKAKGFDDYIKPSYFIKHIEDSGDFLVGISGLLNQSGANGAYNWQTTNQVNQL 479 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383 + ++ N D ++ + + + ++ Sbjct: 480 AGDFRNFTVTPEKHPAAAISVNDIIRNDINYIAASKGIDTTGNGFNDKWNGVGDGSNALA 539 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + +++ T ++ SI + ++ K +V ++ + + GVN Sbjct: 540 IANLKNKEIMVDSKSTFNDFYTGSISQIASRTETANSESEKQTIVMEYLEKLRQSVSGVN 599 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L EE++ + + YN S +++ D++L ++ + Sbjct: 600 LDEEVAQMAMYQHGYNASARVVSVMDQLLDVVINRM 635 >gi|163781856|ref|ZP_02176856.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159883076|gb|EDP76580.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 494 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 60/501 (11%), Positives = 131/501 (26%), Gaps = 30/501 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSE 58 +L F A + + N+ N + + + + + VVT + Sbjct: 1 MLRSFFNAVTGMDASRFWIDVTSDNLSNVNTVAFKAHRPLFQDVISSVTIGLNVVTGTIK 60 Query: 59 NKNMFDKVLHAHSSAI------GQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110 + V+ + + Q + + D + + R S Sbjct: 61 STTYGAGVVVDSTQKLWNIGNFKQTGVNTDLAIQGRGLFILKDPITGANLYTRDGQFRLS 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEV-VQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y L ++ A EV E Q + L+ +NL Sbjct: 121 RDGYMVTSGGFYLQGFRLNEAGEVVGTGLENIHVEQQLQPRPTGQMSFLQPTNLNAEAIP 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 TV D + + D Q ST + Y DG Sbjct: 181 PTVAFDPTNTTSYNYKYTITIYDSLGNEYQADVYFKKASTNEWRVFVLSDYDGDGNLENL 240 Query: 230 TVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ---IRDSVVPI 285 FE+ + T + D ++ + ++ Sbjct: 241 ISNGYRAGFEQSGTPLKTYNYQTLIFDPATGKIDEDDTQTANPLAFNRVPLGNKNYFFLQ 300 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD------NKLCQGISETIC 339 + + + V G+ D +G + + + Sbjct: 301 MFDDTNRPSDVTTGATQTLDTSSGGTLGSAVEGLTTTPGMIFSIGDELTSDTDTNLIQNS 360 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 Q+ S+ + +K L +V L+ ++ Y + + VA Sbjct: 361 YANQFASDFVITLEQNGYTKGDLIDVYVLSEDGSVVGVYSNGKSLPLYRVAVAVFTDPEE 420 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + N + + + V++ +E LI +++Y Sbjct: 421 LTKKGANLYTSITTPT-------ILLAGGSEKVRSGMLEMSNVDIAKEFINLITAQRAYQ 473 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + ++I ++ +L + V+ Sbjct: 474 ANARVITTSNTILDETVNLVR 494 >gi|190890382|ref|YP_001976924.1| flagellar hook protein [Rhizobium etli CIAT 652] gi|190695661|gb|ACE89746.1| flagellar hook protein [Rhizobium etli CIAT 652] Length = 433 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 49/481 (10%), Positives = 114/481 (23%), Gaps = 49/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119 + + I + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + D I + L + A Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVSQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ ++ ++ + V ++ + Sbjct: 181 LPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTKQSVAAAPPPAPPATAATWEVAMYR 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + ++ + G V + + GK+ + + + Q+ Sbjct: 241 NANAATGGTTSFPYTAGGAVGTGSLTFDANGKMTSSGAVTINDGVTGQS----------- 289 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 I+ Q ++ S + Sbjct: 290 ----------------------------------IAMDFSGLTQLGADFSGTGTPNGQAA 315 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 432 Query: 480 K 480 + Sbjct: 433 R 433 >gi|261344142|ref|ZP_05971786.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] gi|282567734|gb|EFB73269.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] Length = 422 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/476 (12%), Positives = 123/476 (25%), Gaps = 59/476 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS SI NI N+ + T V + +N Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + A F +++ + + + N + Sbjct: 62 KDGPITRTDRATDVAISGNGFFRVEDQ------NGDVFYSRDGQFQRDKSGNLVNNQGMV 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + V + + + SEL + + + Sbjct: 116 VTGYPAS---------VDAKGNVSIQSGGVPAGMNIPTDMMDAKKSELAKLTINLNSEDK 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K A D + D+ S + N +++ VY G V E + Sbjct: 167 IKEKAFDVNNPDDIATYNFSTTMTSYDSQGNTHEISVYFVKGANNEWKVYAKDANETKAT 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + D V++ Sbjct: 227 Q---------------------------------------LINTEEPTDPADPVIVHDRL 247 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D +F D + Q S S + Sbjct: 248 VFDGNGRLQAPTDAIFDFDYKGLNGANDGVLKIDLNKTRQQKVSESSVSAIDVNGYPAGE 307 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + ++ L+ N W N S + Sbjct: 308 YTTFKIEDNGLVVANYSNQQKRVVGQIALSAFANPNGLVSQGGNV--WASSNASGNPMDG 365 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ + V++ +EL +I ++++Y + + I D+MLQTL+ Sbjct: 366 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 421 >gi|241203124|ref|YP_002974220.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857014|gb|ACS54681.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 432 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 50/481 (10%), Positives = 109/481 (22%), Gaps = 50/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119 + + I + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSSTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 +L D+ V + D I + L + Sbjct: 121 GFMLMGYSYDSGSPAVVVNGFDGLVPVNVNQDGLTAIASTSGIFKGNLDSNAKIAPVAPA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S + A D + ++ + + ++ Sbjct: 181 TLPSANLATTTTDTK---------------------------KVSMVAYDRLGNKVMYDF 213 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + P + S Sbjct: 214 YFTKKTVVTPPPATPATAATWEVSMFRNADAAVGGTTSFPYSTA---------------- 257 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + L + +D Q I+ Q ++ S + Sbjct: 258 ---SVGTGTLSFDANGKLTAGGAVNIVDPVTGQTIAMDFSAFTQLGADFSGTGTPNGQAA 314 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 315 TPVKDVT-VDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 371 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 372 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 431 Query: 480 K 480 + Sbjct: 432 R 432 >gi|212709492|ref|ZP_03317620.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] gi|212687830|gb|EEB47358.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] Length = 422 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 132/476 (27%), Gaps = 59/476 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS SI NI N+ + T V + +N Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + A F +++ + + N + Sbjct: 62 KDGPITRTDRATDVAISGNGFFRVQDQ------NGDVYYSRDGQFLRDKSGNLVNNQGMV 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + ++ V + + + S+L + + + Sbjct: 116 VTGYPASVDDK---------GNVTVQSGGVPGGMNIPTDMMDAKQSDLAKLTINLNSEDK 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K A D + D+ S + N +++ VY + + + K S Sbjct: 167 VKAKAFDPNNPDDIATYNFSTTMTAYDSQGNTHEISVYF-----VKKDDNKWEVHAKDAS 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 TV + + DG M ++ + Sbjct: 222 ETVAKKLGELEFDGNG--------------------------------KLMTEKVVKGPN 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 DP F G+ ++ + S+ S + + Sbjct: 250 PGDPDTTVQLPTTFDFPFKGLNGANDGTLKVDLGKTRQQKVSESSVSAIDV--NGYPAGE 307 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + ++ L+ N W N S + Sbjct: 308 YTTFKIEDNGLIVANYSNQQKRVVGQIALSAFANPNGLVSQGGNV--WAASNASGNPMDG 365 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ + V++ +EL +I ++++Y + + I D+MLQTL+ Sbjct: 366 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 421 >gi|86750925|ref|YP_487421.1| flagellar hook-associated protein [Rhodopseudomonas palustris HaA2] gi|86573953|gb|ABD08510.1| Flagellar hook-associated protein [Rhodopseudomonas palustris HaA2] Length = 623 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 66/427 (15%), Positives = 149/427 (34%), Gaps = 20/427 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL + A + + N+ NA+ YVR+ + V++ Sbjct: 1 MSLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTVNQVTTLSGPSGSGVSITGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 E L +S L F + + D + N + + L + ++ + Sbjct: 61 NRELDAYLQAQLRTETSGASYASLRSDFLQQLQGLFGDPNSNGTLEDAFNGLTAATQALA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A+ V N+ + +Q +R A+ + ++ L ++ +N+ Sbjct: 121 TSPDSTSARIGVLNAAQVVSGVLNSMSNGIQTLRTGAETGLTDAVNTANNLLQQIASINN 180 Query: 176 AIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ A LDQRD + ++++++ I + +N + V+T G L Sbjct: 181 NIRTNPAGGTSTDAATASLLDQRDAAINQLAQLMDIRVVTDASNQVTVFTGSGMQLVGMQ 240 Query: 232 PRDINFEKMNSYTVTSESNPIF----------IDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++F+ + T ++ NP + +++ +++ GK+ A +++RD+ Sbjct: 241 AAQLSFDAQGTVTPSTTWNPNTSASELGSVRIVYPDGSTADLTNSLKSGKMAAYVELRDN 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + Q QLD+ A + + S+K + + + D+ I+ T Sbjct: 301 TLVQAQTQLDQFAAAMASALSDKTTAGTPATSGAQTGFDLDLTDMKAGNTVNITYTDTTT 360 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 R+ S +R + + + + A N+ Sbjct: 361 GAQRT-VSVMRVDDPTALPLPQTATLNPNDYVVGIDFSGASGSVTAQLNAALNARNLQFT 419 Query: 402 EYARNSI 408 + N Sbjct: 420 GTSPNIT 426 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 45/436 (10%), Positives = 105/436 (24%), Gaps = 8/436 (1%) Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 T A + + Q ++ ++ + Sbjct: 188 GGTSTDAATASLLDQRDAAINQLAQLMDIRVVTDASNQVTVFTGSGMQLVGMQAAQLSFD 247 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S T V + + + K + T Sbjct: 248 AQGTVTPSTTWNPNTSASELGSVRIVYPDGSTADLTNSLKSGKMAAYVELRDNTLVQAQT 307 Query: 172 VVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 ++ + S ++ + N T+ Sbjct: 308 QLDQFAAAMASALSDKTTAGTPATSGAQTGFDLDLTDMKAGNTVNITYTDTTTGAQRTVS 367 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + D T T N + ++ ++ + Sbjct: 368 VMRVDDPTALPLPQTATLNPNDYVVGIDFSGASGSVTAQLNAALNARNLQFTGTSPNITV 427 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L+ + S S + + + + G + Q S Sbjct: 428 LNNPGFSTVNSASVTSTVTSLTGGSAEVPLFTDAGSPYTGAISGNGTQMTGLAQRISVNP 487 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------NVTLLEY 403 L S + AG + + N TL + Sbjct: 488 ALVTDPSRLVVYSTTPPTAAGDTTRPDFITKQLTSSKYLYSATTGIGSNAAPYNGTLESF 547 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + N + L VV N + + Y+ GVN+ EE++ L+ ++ +Y+ + + Sbjct: 548 LQQFVSQQGSNAQAATQLASGQSVVLNTLQQKYATNSGVNMDEEMAHLLSLQNAYSANAR 607 Query: 464 LIMFTDKMLQTLLEGV 479 ++ ++M QTL++ + Sbjct: 608 VMSTVNQMYQTLMQAM 623 >gi|78224295|ref|YP_386042.1| hypothetical protein Gmet_3103 [Geobacter metallireducens GS-15] gi|78195550|gb|ABB33317.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 419 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 44/481 (9%), Positives = 102/481 (21%), Gaps = 63/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + N + + I NI N + + + + + + + Sbjct: 1 MSVTSALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRG 60 Query: 61 NMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + N + N Sbjct: 61 VQIQTVENQFTQGSFESTESGTDLAVQGDSFFVVQNDNGRYYTRAGAFTFDKDKTLVNPE 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + I + + I Sbjct: 121 GYQVQGYGIIPSSGLADGVM-----------------------------------KPIDL 145 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T + VL ++ N S +++++ Sbjct: 146 TTFATTPPKQTSAVDMVLNLDSTQSTPALPWNPANPVATSNFSTSLSVYDSQGNAHTATV 205 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + + I + GS+ + L + Q L A+ + Sbjct: 206 YFRKTAANAWDWHAILPDAQAGTPGSSTTP--LDGTLTFDATGALTGQTPLASAAQNIT- 262 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + QY S Sbjct: 263 ----------------------FTGGVTAPQPILFGMGVGATTQYASPSIVSSQTQDGYY 300 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + + Y + K +A + L + E S Sbjct: 301 QGTLTKVTIDDKGYVNGVYSNGELKKLYQVALAKFASTTGLSKAGGTLFE--ETLDSGQP 358 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S + + V++ + +I ++ Y+ ++K I D+MLQ +L Sbjct: 359 LFSNASTPGVGKVLANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTADEMLQEVLNLK 418 Query: 480 K 480 + Sbjct: 419 R 419 >gi|254445148|ref|ZP_05058624.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] gi|198259456|gb|EDY83764.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] Length = 510 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 44/516 (8%), Positives = 122/516 (23%), Gaps = 47/516 (9%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYV-------------------------R 38 + + N+ S+ I NI N + ++ R Sbjct: 3 FGALSSGISALNSFSKGMEVIGNNIANVNTVSFKSSRIKYSETFNQVLKQSAPSPSSGDR 62 Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + V V L + + + F +++ + + Sbjct: 63 SNVQASQVGLGVQVEGI---VGQFHQGGLSSTNQLTDLAISGEGFFLVED----PKNATS 115 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 R + + + V + + I Sbjct: 116 QFATRGGDFRIDDRGFLVTSGGMRVQGLTGGSIGFEVDVGEDGKWQFVPNEDTQNGTIAP 175 Query: 159 EISNLRRFLSELTV---VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 E R + VN T +++ D + + I T N Sbjct: 176 ESYGDIRLDYDKGDAEVVNSKHTSGTLARNSVMFTNDLVGRDASGNAVLGSIPTPDGNGV 235 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKG 270 G F + T + + + V + +G Sbjct: 236 IDTDSVVYGDASNPHRVGSFVFSTNSDGDATGVEGVTGWHAFMEEAVANLKTLRNVSNEG 295 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + ++ + + + M I + + + + + + ++ Sbjct: 296 SLTGVVTDAEIEQAVSSDFFYAMFGADIDAAANINMDGTAVQQLMIGNGDLTWNNTIDEQ 355 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + S + + + ++ ++ + + Sbjct: 356 ATVTAIMESFPGSLTEAESLISAVRADKT-PELSRFSIDDQGSIVYFLNNGDSFERGQIQ 414 Query: 391 VAGINTNVTLLEYARNSIGWLE------KNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + N L+ +N + L + I + V+L Sbjct: 415 LIDFNDKTALIREGQNLYSSFGAAGVKESQNGNIDGLQVAGTNGLGSIQQGALELSNVDL 474 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +I ++ + +++I +D +LQ ++ + Sbjct: 475 TNEFANMITTQRGFQAGSRIITVSDDILQEVVNLKR 510 >gi|294140191|ref|YP_003556169.1| flagellar hook-associated protein FlgK [Shewanella violacea DSS12] gi|293326660|dbj|BAJ01391.1| flagellar hook-associated protein FlgK, putative [Shewanella violacea DSS12] Length = 638 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 59/472 (12%), Positives = 132/472 (27%), Gaps = 37/472 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + N A+ + Q A NI NA+ + Y R+ + Sbjct: 1 MSM-DLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRFGDSFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLH-AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + L + G Q L ++ S S ++ Sbjct: 60 YISDVKRIYNEYAARELRIGQTGVSGAQTTQTKMSELDQLFSQI---GKSIPQGLNDFFA 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L S + + + TV+ +A ++ + N + + + +I + E Sbjct: 117 GLNSLADLPDDMGIRGTVLGSAGQLADSLNQMQKHLDGQMKQTNDQIAGITDRINEISKE 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L +VN + LD++D L+Q++S+ ++ I + + L Sbjct: 177 LGLVNQELMKSQGEDSQ---LLDKQDALIQELSQYAQVNVIPLDTGAKSIMLGGAVMLVS 233 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + G++ AL RD + + + Sbjct: 234 GEIAMSLDTTAGDPHPGELRVVANVGVQSHVIDPIKM--GGQLGALFTFRDETLIPSELE 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-----------DNKLCQGISETI 338 L +++ + +F++ + + G I I D N + I Sbjct: 292 LGQLSLGVADAFNQANAQGFDLNGEMGQNIFKDINDPSMTIGRVGEFGSNAGSANLRVNI 351 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N L+ + + V L D N + + Sbjct: 352 DDVGLLSGNSFELKYTAPATYELKDTVTGTITPLTLNGTQLDGANGFTVHIDSGILADGD 411 Query: 399 TL----LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 A I + + ++ + + + V++ + Sbjct: 412 KFEIRPSSGAAAGISVMMTDGKG--IAAAAPKITSDAANSGNTQVEMVSIDD 461 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 38/410 (9%), Positives = 100/410 (24%), Gaps = 18/410 (4%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +M S N+ I ++ F + Sbjct: 229 VMLVSGEIAMSLDTTAGDPHPGELRVVANVGVQSHVIDPIKMGGQLGALFTFRDETLIPS 288 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + ++ +N + + R + + Sbjct: 289 ELELGQLSLGVADAFNQANAQGFDLNGEMGQNIFKDINDPSMTIGRVGEFGSNAGSANLR 348 Query: 209 TIVRN-----NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 + + N + + T + + F + Sbjct: 349 VNIDDVGLLSGNSFELKYTAPATYELKDTVTGTITPLTLNGTQLDGANGFTVHIDSGILA 408 Query: 264 GSA-----VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 G + + I + ++ + ++ + Sbjct: 409 DGDKFEIRPSSGAAAGISVMMTDGKGIAAAAPKITSDAANSGNTQVEMVSIDDRTDINFP 468 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD----- 373 + + + E VN P+ + F ++V AG D Sbjct: 469 VTGSELTFEINTTTSMFEVFDVNGTSLGAPAAYTPPLISAHGFTFDVATTAGATDRFTFD 528 Query: 374 ---LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ + + TL + + + + +Q V+ Sbjct: 529 LSFGPGDNTNAVTMAKLSEAKLMNAGGSTLADVYEGTKLSVGGKAKAAEIAVGTAQSVYQ 588 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GVNL EE + L++ +Q+Y S +++ +++ +TL V+ Sbjct: 589 QAYTRVQSESGVNLDEEAANLMRFQQAYQASARIMTTANEIFETLFNAVR 638 >gi|218674739|ref|ZP_03524408.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 433 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 117/481 (24%), Gaps = 49/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTSGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + D I + L + A Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVNQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ ++ ++ + V ++ + Sbjct: 181 LPSANAATTTTDTKKVSMVAYDRLGNKVMYDFYFTKQSVAAAPPPAPPATAATWEVAMFR 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + V ++ + G V + + GK+ + + Sbjct: 241 NANAAVGGTTSFPYSVGGAVGTGTLTFDSNGKMTSSGAVN-------------------- 280 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D Q I+ Q ++ S + Sbjct: 281 -------------------------ITDGVTGQTIAMNFSGLTQLGADFSGTGTPNGQAA 315 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432 Query: 480 K 480 + Sbjct: 433 R 433 >gi|91976147|ref|YP_568806.1| flagellar hook-associated protein [Rhodopseudomonas palustris BisB5] gi|91682603|gb|ABE38905.1| Flagellar hook-associated protein [Rhodopseudomonas palustris BisB5] Length = 623 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 141/415 (33%), Gaps = 19/415 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M L + A + + N+ NA+ YVR+ + V+++ Sbjct: 1 MGLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTVDQITTTAGPSGSGVSIIGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 E L +S L F + + + + + + + L ++++ Sbjct: 61 NRELDAYLQSQLRTETSGASYALLRSDFLKQLQGLYGNPNSTGTLENAFNSLTAAVQALG 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A V N ++ +Q +R+ A+ + ++ L + +N+ Sbjct: 121 TSPDSTSARIGVLNAARVVAGGLNATSNGIQSLRSGAETGLADSVNTANNLLQRIASINN 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ A LDQRD + ++S+++ I + +N V+T G L Sbjct: 181 NIRTNPAGGTSTDVATASLLDQRDAAISQLSQLMDIRVVTDGSNRATVFTGSGMQLVGMQ 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----------VVVSSNQGSAVPKGKIKALLQIRDS 281 ++F+ + T ++ + + + S++ G I A +++RD Sbjct: 241 AAKLSFDAQGTVTPSTTWSSNSATSQLGSVKITYADGGTIDLTSSLKSGTIAAYIELRDK 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + Q QLD+ A + + S+K + + A + ++ IS T Sbjct: 301 TLVQAQTQLDQFAASMASALSDKTTAGTPATSGAQAGFALDLTNMKPGNTFNISYTDTTT 360 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 R+ D SV + Y I+ S + + Sbjct: 361 GAQRTVSVMRVDDPSVLPLPQTATLDPNDYAVGIDFSGASGSITAQLNAALNAKN 415 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 49/380 (12%), Positives = 111/380 (29%), Gaps = 14/380 (3%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + + T + Q + D ++ L + T+V Sbjct: 244 LSFDAQGTVTPSTTWSSNSATSQLGSVKITYADGGTIDLTSSLKSGTIAAYIELRDKTLV 303 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISE-IIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + A D+ S G + + N + T Sbjct: 304 QAQTQLDQFAASMASALSDKTTAGTPATSGAQAGFALDLTNMKPGNTFNISYTDTTTGAQ 363 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA-------LLQIRDSVVPI 285 R ++ +++ +V +D + + G I A + + Sbjct: 364 RTVSVMRVDDPSVLPLPQTATLDPNDYAVGIDFSGASGSITAQLNAALNAKNLEFTGTSP 423 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 L+ + + S + + + + G + Q Sbjct: 424 NITVLNNPGFSTVTAASVTTTETSLTGGSAEVPLFTDGSSAYTGVLSGTGAQMTGFAQRI 483 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------NVT 399 + + L S + AG + + A N T Sbjct: 484 AVNTGLIIDPSRLVVYSTTPPTAAGDTTRPDFLTKQLTTSKYLYSAATGIGSTSAPYNGT 543 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L Y + +G + + L VV N + + YS + GVN+ EE++ L+ ++ +Y+ Sbjct: 544 LSSYLQQFVGQQGSDALAASQLAEGQSVVLNTLQQKYSTSSGVNMDEEMAHLLSLQNAYS 603 Query: 460 ISNKLIMFTDKMLQTLLEGV 479 + +++ ++M Q L++ + Sbjct: 604 ANARVMSTVNQMYQALMQVM 623 >gi|188580158|ref|YP_001923603.1| flagellar hook-associated protein FlgK [Methylobacterium populi BJ001] gi|179343656|gb|ACB79068.1| flagellar hook-associated protein FlgK [Methylobacterium populi BJ001] Length = 632 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 68/437 (15%), Positives = 141/437 (32%), Gaps = 20/437 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLSPVAAGVGNAGVATGTIGRALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L + +S L+ + + +++ + SL++ + N + Sbjct: 63 AAALKQLRSETSGAAYTGLMAQTRTQLDTLYGRPGDSSALDGVFNSFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 TV+ +A ++ ++A VQ +R+ + ++ + L++L +N I Sbjct: 123 TAARATVLSSASDLATRIGSAANGVQALRSGLESQLAADTDQASNLLAQLAKLNTRIVAT 182 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232 +A D DQRD L +S +I I+ + +++ + V T G TL + Sbjct: 183 SADDPSRPDLEDQRDQALTSLSGLIDINAVTQSDGSVSVLTGSGVTLLDRSNAASLSFDA 242 Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S + G + A+ G I A +++RD+V+P Q Sbjct: 243 RGTLSANALYSNDPSQSGVGTIVATTPGGGKIDLLASGAIRSGSIAAAVELRDTVLPQAQ 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L + S++ + + L T+ V + Sbjct: 303 RQLDDLAAGLSRAMSDRVATGTVPTDGTKGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + I +T + Sbjct: 359 RNLILLPSYQTPPPAIPAGATDDANATVIPFTIRRPDAVPPRTADEIRGAITAALGGGYT 418 Query: 408 IGWLEKNRSDSHDLHMK 424 + + + + + Sbjct: 419 VSGVPGGEAGAVRILSS 435 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 1/238 (0%) Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 T++ I + S VP G+ A+ + + Sbjct: 394 PDAVPPRTADEIRGAITAALGGGYTVSGVPGGEAGAVRILSSGGAALVAASASVTQVTSA 453 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + G D ++L S S + G+ + Sbjct: 454 ADIKGSATQIPLFVDGASATLFTGSFDGGSQLTGFAQRIAVNPTVVGSAGSLVGITGTGT 513 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + T ++ ++ + I + + Sbjct: 514 ASGIGDGARPQALFTALTG-TQRLFSSSSGISGINAPTRSSVADFVQGVISVQGAAAAAA 572 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 DL + + +++ GVN+ +E+S LI ++Q+Y + +++ M+ TLL Sbjct: 573 QDLDEGQGIALSTAQGRFASASGVNIDQEMSNLIALQQAYAANARVLTAARDMIDTLL 630 >gi|320354325|ref|YP_004195664.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122827|gb|ADW18373.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 434 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 47/487 (9%), Positives = 117/487 (24%), Gaps = 60/487 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT 54 M + + + N SQ + I N+ N + + ++ + T Sbjct: 1 MGIQSALYSGVSGLNTNSQAMSVIGNNLANTNTLGFKGSRSIFSDLLSSNVFGSGGTSQV 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R ++ D + + + E + + + + + R E Y Sbjct: 61 GRGVGLSIVDSIYSQGTFETTSSDTDVAIEGVGFFVLKEAGNDTAYYSRAGAFRFDDEGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N + + D L + + Sbjct: 121 LVNPEGFRVQGKLFDPTN-------------------------------NSTLLPMDPTD 149 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + L L + + I + I NNN Y++ Sbjct: 150 IQVANVGLIEANPTSELTFTTNLDENSTVISSATPIDPNNNATYNYSASSQIFDSLGESH 209 Query: 235 INFEKMN-SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + T+ + ++ + + Sbjct: 210 LITVYWRLVNDATNTWEAAYTIDNDAATITAITDFDASTAGNQAMSFDNIGKA------- 262 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 P G N E QY S+ + Sbjct: 263 ------------PDTNGDGVPDPFTTTVGPITWANGAATSTIELSFDCTQYDSDSIVIGQ 310 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ ++ Y + N +A L N ++ Sbjct: 311 QQNGYAAGELTNVSINSEGVVVASYSNGRQINISQLVLAKFQNPGGLKLAGAN--RYIAP 368 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + + + + + + V++ +E +I ++ + ++K+I D+ML Sbjct: 369 AEAGTIRVGLPGPEL-GKLFTNSLEQSNVDMGQEFVKMITTQRGFQANSKIITTVDEMLS 427 Query: 474 TLLEGVK 480 L+ + Sbjct: 428 ELINLKR 434 >gi|294665573|ref|ZP_06730854.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604671|gb|EFF48041.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 624 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLITVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 37/446 (8%), Positives = 114/446 (25%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + + ++ + ++ +A+ + Sbjct: 239 LITVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S S+ + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + + N + + ++ + + + Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSGDNGNAKLLANIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|119469950|ref|ZP_01612755.1| flagellar hook protein E [Alteromonadales bacterium TW-7] gi|119446660|gb|EAW27933.1| flagellar hook protein E [Alteromonadales bacterium TW-7] Length = 454 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 114/483 (23%), Gaps = 41/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 FN A A + NI N + + + + R Sbjct: 2 SFNIALTGIAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGRTKNGDGVQT 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ + + A+ + + A D + +++ Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMSQDLGAQDFT----YTRAGAFKLDKDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D A + + S +I + L Sbjct: 118 VDAKGNYLQGFPVDEATGDTTSVSLSTSSALQIPDSSGSPRATTNVYSSFNLDSRADA-- 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I+ S ++ VY S G Sbjct: 176 -----------------------PSIAFDPETSASYNSSTSTTVYDSLGEPHVLQFFFVK 212 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + E+ + + Q S +P + + Sbjct: 213 TDSAVTGNDNEWETYATLDGKSFSPAGLEETAAPFTPLSTFQFDSSGLPSSTDGVANTGT 272 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 A + A D+D T V QY S Sbjct: 273 TFNPLTVPGGAGAAAGLSDVLTNGASFPDDIDINWRDEAGTTNKVPTQYASRFEVKALDQ 332 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + + + + L + W + Sbjct: 333 DGATVGRLAGIDIGTDGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGD--TAWKKSLT 390 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S I+ S VNL EL LI ++++ +++ + + Q + Sbjct: 391 SGEPIAGEPGSGTLGSINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTLQQAI 450 Query: 476 LEG 478 L+ Sbjct: 451 LQI 453 >gi|92116887|ref|YP_576616.1| flagellar hook-associated protein [Nitrobacter hamburgensis X14] gi|91799781|gb|ABE62156.1| Flagellar hook-associated protein [Nitrobacter hamburgensis X14] Length = 619 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 152/449 (33%), Gaps = 20/449 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 MSL + + A + + + N+ NA+ YV + + + V V+ Sbjct: 1 MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQIVTGSTGSGVRVIGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 L ++ + + + + + + + ++ +L++ S Sbjct: 61 NRTLDTYVQSQLRTENAGGAYADQIANVLGQLQNVYGTPGNDGTLENALNNFTSALQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +V++ A+ + Q N + +Q +R++A++++ + +S ++++ +N Sbjct: 121 ASSGNTAAQSSVLNAAQALAQQLNATTSGIQTLRSNAEQDLSVSVSQANAAMAQIAQINQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG-TTLFETVPRD 234 ++ +A A +DQRD + ++S ++ + + N V+T+ G + Sbjct: 181 KLQGMSAQDPAAATLMDQRDSAVDQLSRLMDVRAVTDGANQTSVFTTSGIQLVGGVQAST 240 Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 ++F +S T S+ N +G + ++ G+I A +Q+RD Sbjct: 241 LSFNAQSSLTANSQWNADPSKSSVGTIICQLPNGAKIDMIATQSINSGQIAADVQLRDKT 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + QNQ+D+MA L + S+ + P + D L Sbjct: 301 LVQAQNQVDQMAATLASALSDVTTSGTKTAGPPVSYATDLTNVLPGNSFNVTYTDSSNVQ 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + N + + + + + N N + + Sbjct: 361 HNVTVVRVDDPTARPIPNTASNPND--KVIGVDFSGDAASVAAQLSAALGSSNLNFSGVG 418 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + + + + Sbjct: 419 MSLQVTSTAASTVNAASTTTTVQSLASGN 447 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 127/432 (29%), Gaps = 10/432 (2%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 S ++ SA+ Q L A+ + + + S + ++ S S++ Sbjct: 186 SAQDPAAATLMDQRDSAVDQLSRLMDVRAVTDGANQTSVFTTSGIQLVGGVQASTLSFNA 245 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S + D ++ V KI A + I L + T+V Sbjct: 246 QSSLTANSQWNADPSKSSVGTIICQLPNGAKIDMIATQSINSGQIAADVQLRDKTLVQAQ 305 Query: 177 IKFKTASKHDAHDFLDQRDVLLQK----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + A D + +S ++ ++ N+ V YT Sbjct: 306 NQVDQMAATLASALSDVTTSGTKTAGPPVSYATDLTNVLPGNSFNVTYTDSSNVQHNVTV 365 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ T+ + + GV S + S + + Q+ Sbjct: 366 VRVDDPTARPIPNTASNPNDKVIGVDFSGDAASVAAQLSAALGSSNLNFSGVGMSLQVTS 425 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A + + S + + P L L G + I + L Sbjct: 426 TAASTVNAASTTTTVQSLASGNPQLPFFTDRASLYTGAITGTASQITGLAGRIQVNAKLL 485 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLLEYARN 406 S + + AG + D TL + + Sbjct: 486 ADPSKLTIYNTSPVTPAGDTTRSDFIFDQLTSATYTYSPNTGLGAAAAPFKGTLPSFLQQ 545 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + VV N + E ++ GVN+ E++ LI ++ SY + ++ Sbjct: 546 FVSVQSSAATTAKQVAQGQDVVVNTLQEKFNAKAGVNIDTEMTNLIALQNSYAANAHVMS 605 Query: 467 FTDKMLQTLLEG 478 M+QTLL+ Sbjct: 606 VVQSMMQTLLQA 617 >gi|302878282|ref|YP_003846846.1| flagellar hook-associated protein FlgK [Gallionella capsiferriformans ES-2] gi|302581071|gb|ADL55082.1| flagellar hook-associated protein FlgK [Gallionella capsiferriformans ES-2] Length = 646 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 70/441 (15%), Positives = 147/441 (33%), Gaps = 22/441 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 +++ + + N A ++ NI NA+ Y R+ + + V V Sbjct: 3 SNIYSASLSGMNAAQFALSTTQHNIANANTPGYSRQTMLVNSRAAQATGAGFVGQGVDVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + + + M AD + I ++ + Sbjct: 63 GVVRNYDQFLTTQVRQEQTQASYLSTYLTSMKQIDNMVADPAA--GVSPAIQNFFNATNA 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N +TV+ AE V F + + I +I + + + +++ + Sbjct: 121 LASNPESIPARQTVLSTAEATVNRFQAMDQRLTDISNSLTTQIASSVQTVNTYATQIATL 180 Query: 174 NDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N++I TA +D LDQRD L+ +++ I +ST + + M V+ +G L Sbjct: 181 NNSIKSAIATAQGQQPNDLLDQRDQLVNLLNKEIKVSTQQQTDGSMSVFVGNGQALVVGD 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N + +G V+ Q S++ G + A L RD + +N L Sbjct: 241 QAMALQVVQNPADPSKVDVAYLNNGKSVTMQQ-SSLQGGNLGAYLTFRDQSLEPARNALG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----LDNKLCQGISETICVNPQYRS 346 +A L + ++++ + + G I + L+N ++ TI + Sbjct: 300 RVALGLATNINQQNQMGLDLNGALGASIFKDVLPRVDKGLNNAGAGVLTATISNMAAVTT 359 Query: 347 NPSFLRDGGSVSKKF--LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L+ G+ N G + + + P + L+ Sbjct: 360 SDYQLKFDGANYTMTRMADNQLTNLGTAASVMPLTQVVDGVSVVIPAGMFAGDSFLIRPV 419 Query: 405 RNSIGWLEKNRSDSHDLHMKS 425 N+ + +D L + Sbjct: 420 ANAARDMGVLTTDPTKLATAA 440 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/396 (9%), Positives = 98/396 (24%), Gaps = 13/396 (3%) Query: 87 KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + +S + S + + LG+ + A + Q Sbjct: 262 LNNGKSVTMQQSSLQGGNLGAYLTFRDQSLEPARNALGRVALGLATNINQQNQMGLDLNG 321 Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS--EI 204 + A K++ + + + D D + + +++ ++ Sbjct: 322 ALGASIFKDVLPRVDKGLNNAGAGVLTATISNMAAVTTSDYQLKFDGANYTMTRMADNQL 381 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 + T V + + +F + + D +++ Sbjct: 382 TNLGTAASVMPLTQVVDGVSVVIPAGMFAGDSFLIRPVANAARDMGVLTTDPTKLATAAP 441 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + L+ +V + + +P + A Sbjct: 442 MISTTATTNTGTGVITAGSVNTPLPLNANLQVPVTITFTSATSYTVTGALPAVAGAVAYT 501 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + G + TI P N + + Sbjct: 502 EGVPITYNGWTATITGTPA-----------AGDVFNVKSNTTATGDNRNALLMAALQTQN 550 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 G N L +G + + + + + GVNL Sbjct: 551 LLASSGGVGANATTNLQGAYSQFVGSIGAKTQELLVTSTAQDAMVTQTVATQQSVSGVNL 610 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE + L++ +++Y + K + + M +LL + Sbjct: 611 DEEAANLLRYQRAYQAAAKAMQIANTMFDSLLTLGR 646 >gi|227328344|ref|ZP_03832368.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 564 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 140/414 (33%), Gaps = 14/414 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + A +++ NI N Y R++ + + V V Sbjct: 1 MSNLINTAMSGLKGAQVALSTVSNNISNQAVIGYSRQNAILEQAISSSTSAGYIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + L A + + +E + ++ + S + I +L+ Sbjct: 61 VSINRQYNEFITNQLRAAQTTSS--SVSAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + +TV+ AE +V F + + ++ + + + +I+ + + ++ Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSIVGLVNTHTDQIAS 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S +D LDQRDVL+ ++++++G+ V++ V +GT L + Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + V S S + G + LL R + + QL Sbjct: 239 GTSNELVAIASSNDPTRLTIGYKDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARGQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + + V G K + + + + Sbjct: 299 GQLALAFADAFNTQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNGGNAVLAPSYTNTKDVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + W V L+ S N I + Sbjct: 359 ATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDNSLNFDGVKMAITGTPATNDSF 412 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 40/425 (9%), Positives = 115/425 (27%), Gaps = 17/425 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114 + + + + + + + + + P + + ++ Sbjct: 152 RDMDSGLNTQIQSIVGLVNTHTDQIASLNNEITKLMGANSGTMPNDLLDQRDVLVDQLNK 211 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + V + A + N + + + + + + +++ +N Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNELVAIASSNDPTRLTIGYKDQTNDVVSLN 271 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 ++ + + D ++ ++ N Y +G + Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARGQLGQLALAFADAFNTQHQQGYDRNGVKGGDFFSFG 331 Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +S + P + + V + S G + ++ D+ + Sbjct: 332 KAVVLNDSKNGGNAVLAPSYTNTKDVQATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDN 391 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + G +++ + D I D+ + + L Sbjct: 392 SLNFDGVKMAITGTPATNDSFLLKPVNDVIIDMAVAVSDPNKIAAASVKLDENGAPVLDG 451 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ + + N L N + ++ + +G + Sbjct: 452 SGNPVFGGVSDNTNAKALLALQNEKI--------------VGGKASVSGAYASLVGAIGN 497 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + Q V ++ + GVNL EE L++ +Q Y + ++I + Sbjct: 498 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYIANAQVIKTAQSIFD 557 Query: 474 TLLEG 478 LL Sbjct: 558 ALLAA 562 >gi|153954739|ref|YP_001395504.1| hypothetical protein CKL_2121 [Clostridium kluyveri DSM 555] gi|219855203|ref|YP_002472325.1| hypothetical protein CKR_1860 [Clostridium kluyveri NBRC 12016] gi|146347597|gb|EDK34133.1| FlgK [Clostridium kluyveri DSM 555] gi|219568927|dbj|BAH06911.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 632 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 67/460 (14%), Positives = 143/460 (31%), Gaps = 29/460 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++FN A++ NI NA+ + Y R+ + Sbjct: 3 GLFSIFNTAKSGLFAQQTSINVTSHNIANAETEGYSRQRATLVTTTPYTMPSMNAATIAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 VTV + + D + + G + + E + ++ ++ + + Sbjct: 63 QLGTGVTVASIDRIRDSFLDYQIRVENGVNGHYTAKDKYLSQVENVL-NEPTDSGISSLM 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S+ +S + S + TV A ++ + N+ ++ I+ +A EI+ + ++ Sbjct: 122 SEFFNSWQDLSSSPQNTS---TVAQQAYQLTNDLNSVYSQLTSIKDNAKSEIKSAVVDIN 178 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L++++ +N IK S ++ +D +D RD+LL ++SE GIS R + V TS+ Sbjct: 179 GMLTQISQLNQQIKDVKMSGNNPNDLMDSRDLLLDQLSEKFGISIDPRKYEGIDVTTSNS 238 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + D N S N + + + + K + Sbjct: 239 SI---YGDADDNGAAPLISEGGSPLNIVQANDADNINVATFSCVTSITKKTDADGTTGKA 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD--GIKDLDNKLCQGISETICVNP 342 ++ + L ++ E L + + + Sbjct: 296 TYEVSYYKKGDTLSDDNKVTIYVSMTEEEADKLDTSRVLWANNEGTAYKVKDGKDASGKD 355 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S + +V +N L P S N +L Sbjct: 356 AKVIDGSLNNNSTTVDSPISFNQLALFTPPSGELKGYVSVQNNVAEYQDELNRLAKSLAV 415 Query: 403 YARNSIGWLEK---NRSDSHDLHMKSQVVFNHISESYSNT 439 + + S S + + + V + S Sbjct: 416 SVNAIVSQSSTWVADNSGSPEGGINNFFVNGDTDGNNSEE 455 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 75/210 (35%) Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + +S P + G+ SE+D N+ N+ Sbjct: 422 SQSSTWVADNSGSPEGGINNFFVNGDTDGNNSEEDENNINAGNITVNIDILNDPSKIKIA 481 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + S + SN + + S + +V + DLI + + Sbjct: 482 TKYDSNGNSLGTDTDSNRALAIAQLANSLMNIQSVTEDSSREDLIGDIFATKDTLNNVYA 541 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 V +N TL Y N + + + ++ ++S +T GV+L EE++ Sbjct: 542 VGSVNGGSTLDNYFNNLVNKVGMHEEEAKKQVDYEATQLESFTQSRESTSGVSLDEEMTN 601 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI+ + Y + K+I D++L ++ G+K Sbjct: 602 LIQFQHCYQANAKMISTVDELLDVVINGLK 631 >gi|90408066|ref|ZP_01216237.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3] gi|90310823|gb|EAS38937.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3] Length = 693 Score = 134 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 57/409 (13%), Positives = 135/409 (33%), Gaps = 16/409 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + +F + +++ A+ NI N + K Y R+ V Sbjct: 1 MADLFQIGLSGIHSSQASLATTGHNIANINTKGYSRQSVEVVTGGADRYGSNFIGRGALV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++S + + + + + + +D + S T + ++ ++ Sbjct: 61 NSIERAYDRFAFTENVMNTSQLAYSKEVFTQTNQIDALLSD--SSTSATKPVLEVFKAIN 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++++ ++ ++ ++ + +I L + Sbjct: 119 GVADHPNMLESRQVFLESSSNMINQYHRLYDNLEIQYNSINHDITNSAKTLTTLAENVAQ 178 Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I S D ++D LD+RD + K+SE + +S + N + VY G ++ Sbjct: 179 LNVQIAAVLGSGGDSRSNDLLDERDRAIAKLSEFVDVSVVPVKNGMVNVYVGSGQSIVMG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + ++G +V GKI AL +R++ + NQL Sbjct: 239 TTSLNIISVNGDPDPSRQELAMNVNGNLVK--LDGVRMGGKISALFDVRNNDIEKAFNQL 296 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + L S +E+ E G I + I + + ++ + S Sbjct: 297 GQNIMGLTHSMNEQQKQGQTLEGKIGGDIFNDINSRQSMKNRVLAHNDDLGSAQLSLRVD 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L A + N D A +++ Sbjct: 357 DLSLLSADEFTLEVNDYQAATATTAEKIAFTLTNNRTGDTQAVSINDLS 405 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 49/470 (10%), Positives = 134/470 (28%), Gaps = 15/470 (3%) Query: 17 ASQQFASIVRNIENAD-NKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIG 75 S + NI + + + + R++ ++ V + R K + + Sbjct: 233 QSIVMGTTSLNIISVNGDPDPSRQELAMNVNGNLVKLDGVRMGGKISALFDVRNNDIEKA 292 Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEV 134 +L Q+ L M+ + I + + + S + + + +A+ Sbjct: 293 FNQLGQNIMGLTHSMNEQQKQGQTLEGKIGGDIFNDINSRQSMKNRVLAHNDDLGSAQLS 352 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + S + + + + + + N+ A + + Sbjct: 353 LRVDDLSLLSADEFTLEVNDYQAATATTAEKIAFT--LTNNRTGDTQAVSINDLSKTKRV 410 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 D+ +S I ++ T L + ++E N I Sbjct: 411 DLPNTGLSLGIDAIIAADPPQVGKKFSLRPTRLGAQEATLQHQNPEKIAAASAEINVIQK 470 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 ++ + + L +D L + G D + + + Sbjct: 471 KENNGTAQLRVSALHDPLDPLYMKKDE-------PLSIVITGNTGGVLTYDIVNKDGNII 523 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRS----NPSFLRDGGSVSKKFLWNVKNLAG 370 + + ++ N + + + ++ +L Sbjct: 524 SLVPGSSNNYVPPKSNGDLLTGLTVTPDLLSGKVTFNIAGIDVEMYQGSPLVGDIFSLNY 583 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + + N T + I + +++ + ++ Sbjct: 584 NETGDGDNSNILEMAALQGKKIMNNNKATFQDIYSGMISEIGSRTANADISMKSATILQQ 643 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E N GVN+ EE + L+ +Q Y+ + ++I ++ T+L+ V+ Sbjct: 644 QSFERVENVSGVNMDEEAANLLMFQQHYSAAARVISVAGELFDTILQAVR 693 >gi|254294559|ref|YP_003060582.1| flagellar hook-associated protein FlgK [Hirschia baltica ATCC 49814] gi|254043090|gb|ACT59885.1| flagellar hook-associated protein FlgK [Hirschia baltica ATCC 49814] Length = 714 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 55/428 (12%), Positives = 132/428 (30%), Gaps = 7/428 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV----VTQR 56 MS+ ++ + + +++ N+ N + + Y R DT V + Sbjct: 1 MSIGSIMATSLSALRANQSALSTVSTNVANVNTEGYTRLDTHFNSLGAVSGSFGVEVKVQ 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 ++ +G +L F + + + S + + DS+ S + Sbjct: 61 RAADKFLAASEMRTAATVGATSVLAGFMDRAQGLLGNPSDGGSVFASLDAVLDSMGSLAL 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + S + + I + + ++ N +A E+ +R +A+ ++ I + + +N + Sbjct: 121 DPSSSLRQGSAISDIQNMLNQVNQTADELSALREEANAQLRSVIGEANTLMETIAELNTS 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I+ + DA +++ +L+ ++SEI+ + R + + T++G L + Sbjct: 181 IQQSKIAGVDATQAENEQSILIDRLSEIVDVRAQERPLGGVDLRTTNGYLLVSMEAASFS 240 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ S + + G+I L+Q RD +P E A Sbjct: 241 MGDVSGLQ-GYPSVEVSHSNESSKLPLDKYIQSGEIMGLIQARDVDIPELSVAFGEYASG 299 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ S + + A L ++ + + + L Sbjct: 300 LVDSLNAEHNNASAVPAPNVLTGSNTGLIDSDIHSFEGVAHMAITNSDGEIVRNLTIDFD 359 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + A P I + + G + + Sbjct: 360 AGNISGIDEFGAAVGPIAIGATVGGLATS--LNTALGGDGTASFTNGVLEISANDASEGV 417 Query: 417 DSHDLHMK 424 Sbjct: 418 AIRQDEDT 425 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 50/394 (12%), Positives = 102/394 (25%), Gaps = 7/394 (1%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 I N +I+ ID + + V I A Sbjct: 321 TGSNTGLIDSDIHSFEGVAHMAITNSDGEIVRNLTIDFDAGNISGIDEFGAAVGPIAIGA 380 Query: 153 D-----KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + V+ + + D D + S + G+ Sbjct: 381 TVGGLATSLNTALGGDGTASFTNGVLEISANDASEGVAIRQDEDTPSDWAGRGFSHMFGL 440 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + ++ T G + + M ++ + V ++ A Sbjct: 441 NNLIEKPTPTNYATGLGGAGEASPHGFTTGQTMTFDIRSNTGAILNTVTVSPTTGGTIAD 500 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 ++ L SV D + + A L Sbjct: 501 LVTQMNTSLNGYGSVSIDDDYGTITFQGAANTKSDSLDIVVDTTSRTGSGISATQFFGLS 560 Query: 328 NKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 ++ I + + S L + + G S Sbjct: 561 VAGSADRAKDIEIRDAILKDYSKLATAKPDLDGAVEGDSVLEVGDGRGATALSLSGAVIR 620 Query: 387 IFDPVAGINTN-VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 F GI ++ +YA G + S ++ V ++ + GV++ Sbjct: 621 QFGAAGGIAAQKTSINDYAARLAGAAGARATASEQALNSAETVRTEVAMRRESVEGVSID 680 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EEL + + +Q+YN +++++ M TLL V Sbjct: 681 EELVKMTQYQQAYNSASRMMQAASDMFDTLLRLV 714 >gi|332994162|gb|AEF04217.1| flagellar hook protein FlgE [Alteromonas sp. SN2] Length = 458 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 130/483 (26%), Gaps = 37/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + NI N + + V Sbjct: 2 SFNIALSGVAAAQKDLDVTANNIANVNTVGFKESRAEFGDVYATSLLAGSKTKVGDGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++A+ F A D+ + + + ++Y Sbjct: 62 QDVAQQFSQGSLQFTNTALDLAITGNGFFATV----PDETSRDFSFTRAGQFKLDDDNYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + D+L +++ ++ VQ + E+ + ++ Sbjct: 118 VNSNGDLLLGFPVNSDSTSSSVALSTTEPVQIPDSSGSPAQTSEVDIRMNLPAGDQGLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A + + + + ++ + T + + + + Sbjct: 178 A---AFDPQDPLTYNAATSVTVYDSLGDSHVMTYYFVKDVAADNEWYVATAVDDQLTDLV 234 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N +S T+ ++ G V++ + G + ++ + + Sbjct: 235 NSTGTDSDPTTAVNSLGTNTGNGVTAAKLVFSQGGDFIGIESPDGIQTTDYKLTTEALGS 294 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L I + P + T QY S Sbjct: 295 ALSNGADATQQIGIDFNLDP------------------SNATTVEPTQYASAFEVTSLEQ 336 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + + + ++ + + L + ++S W E Sbjct: 337 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFANEQGLTQ--QSSTEWKESIL 394 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I+ S VNL EL +I ++++ +++ + + + QT+ Sbjct: 395 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 454 Query: 476 LEG 478 L Sbjct: 455 LNI 457 >gi|294624307|ref|ZP_06703010.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601389|gb|EFF45423.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 624 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLITVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 37/446 (8%), Positives = 115/446 (25%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + + ++ + ++ +A+ + Sbjct: 239 LITVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S S+ + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + + N + + ++ + + + Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|310816852|ref|YP_003964816.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] gi|308755587|gb|ADO43516.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] Length = 432 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 57/488 (11%), Positives = 128/488 (26%), Gaps = 64/488 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----VVTQ 55 MS+ + N + + + A+I NI N+ Y R T + Sbjct: 1 MSISSSMNAGVAGLSANANKLATISDNIANSSTNGYKRAQTEFYAMVIGSSSTKYTAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLE 112 R+ + D+ L + S+A + F + + + + + Sbjct: 61 RTTATRVIDERGPLVSTSNATDIAISGRGFLPVTTLSAIEAGGALPFQMTTTGSFSPNAA 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y S +L D+ + + + +R ++ + + L+ Sbjct: 121 GYLTTASGHVLMGWAADSTGSIGTQSRDTTSGLTPVRVLTNQ----VVGSPTTQLTLAAN 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + A+ ++ D L + Sbjct: 177 LPATSTEAGATGTVETQVIEYYDNLGK--------------------------------- 203 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + T++ P ++ + AL+ D V + Sbjct: 204 ---------TKTLSVNYIPTVPATGESNTWTVEIYDDAQGGALVGTYDLVFDDSRTGGGR 254 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + V + DP G + + G+ Q + + Sbjct: 255 LLSVTTIAGGPYDPATGLMSID--------VASGPLTINLGVPGQADGMTQLSDGFAPVA 306 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + L Y + + PV + L + Sbjct: 307 VTRDGAPSGTLTGVEVDASGKLYGTYSNGLTRLLYQIPVVDVPNVNGLQALGSQTYAV-- 364 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + L + S V++ EL+ +I+ +++Y+ + K+I D+ML Sbjct: 365 SQDSGAFFLWDAGAGPTGEMLGYASEGSAVDVATELTQMIQTQRAYSSNAKVIQTVDEML 424 Query: 473 QTLLEGVK 480 Q + Sbjct: 425 QETTNLKR 432 >gi|3493240|gb|AAC33326.1| hook associated protein I homolog [Caulobacter crescentus CB15] Length = 397 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 119/377 (31%), Gaps = 9/377 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A+ + A + A NI N + YVR+ + V + Sbjct: 1 MSLNAIMSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLSNGMGVGVNIDAI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S G+ ++ S + + D S + + + S Sbjct: 61 KRATDQFLQSASLNAASESGRASIVASTLNSAQQLFGDPSGETSFFTVLDDVYAAFSSAQ 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S +L + ++ + + + K+ DAD I ++ + LS++ +N Sbjct: 121 DDPSSSLLRTQALTRLDDFLSGSSRITASLSKLGKDADTRIAADVGRVNDLLSQIDALNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + DA + + L+ ++S+++ + R +VV +++G L + Sbjct: 181 DITRAKVAGADATGAENVQSSLVDELSKLMNVQISPRTLGGIVVRSTEGLNLAGDGAAKV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + T V N G+I+ L+ +R+ + +QL E Sbjct: 241 TYQTSATATGFLTVQLANGSDYPVPLNI----SSGEIRGLMDVRNIDLVNLSDQLGEFTS 296 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + A + L + D L +T D Sbjct: 297 RATEEINRAANAASSVPAPTSLTGRNTGLDAQAALTGFTGKTTIALTTASGVIQRRIDID 356 Query: 356 SVSKKFLWNVKNLAGYP 372 + N + Sbjct: 357 FDAGTMTVNGAAGPAFT 373 >gi|310659037|ref|YP_003936758.1| flagellar hook protein [Clostridium sticklandii DSM 519] gi|308825815|emb|CBH21853.1| flagellar hook protein [Clostridium sticklandii] Length = 418 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 44/478 (9%), Positives = 116/478 (24%), Gaps = 60/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N A + N + I NI N + Y S Sbjct: 1 MMRSMNSAVSALRNHQLRMDVIGNNIANVNTIGYKSSRVTFKDS---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++L S G + + D ++ Sbjct: 45 LSQMLRGAS---GPDASRGGTNPQQVGLGMDLSSIDTLFT-------------------- 81 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + R + + + D + Sbjct: 82 ------------TGVPDRTDRGLDVMVNGEGFFMVSADGTDNGMYYTRAGNFDIDEDGNL 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D L + + +G + ++ + T++ R + Sbjct: 130 VNADGLRVLGYKTDDAGNVGNEVGGIVVPLADSIPPIATTNVVMEGNLDARAVLTGSTTP 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T+ ++ D + S +++ ++ + Sbjct: 190 PTIERQTEITVNDSLGTSHKI-------RLEFTKTAANTWNVTPTPITTPPSPAGTPVSI 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 +P G + + + + QY ++ S L S + Sbjct: 243 AFEPSTGKLTAASVKTLNMTLTPTNGASPVTFDVDLSALTQYGTDSSALMRSQDGSPVGV 302 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + K + L++ N + S ++ Sbjct: 303 LTSYAIGQKGEVEGVFSNGRTKILGQVATSIFANPAGLVKMGGNL--YRSSANSGDPQVN 360 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L +E + +I ++ + ++++I TD+ML+ L+ + Sbjct: 361 KPGTGGNGGLQPGALEMSNVDLGKEFTNMIVTQRGFQANSRIISTTDQMLEELVNLKR 418 >gi|317406201|gb|EFV86450.1| flagellar hook protein FlgE [Achromobacter xylosoxidans C54] Length = 495 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 50/498 (10%), Positives = 116/498 (23%), Gaps = 28/498 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+Q I NI N+ + + V + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSSTASFADVYASSRVGLGTKV--AAITQ 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G + + K M D + ++ N L Sbjct: 60 RFTVGTVNGGGGEYDIAIDGAKGMFRVTDESGAIMYTRNGEFLVDKNNFIVNAQGYRLTG 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIEL------EISNLRRFLSELTVVNDAIKF 179 V + I + + + + Sbjct: 120 YPAGAIGANPVELQLPTANVAPKATTTATTVANLDANAKVIYQVDTVTAPPVNGSVTMTG 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE--TVPRDINF 237 T + + T N + + + T VP ++ Sbjct: 180 ATPASPATQYNFTRDATGNIVWVNQPPAGTYGAAPNLITIDAAGAVTTGNLAQVPGYKDY 239 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + S + + N + ++ + Sbjct: 240 TAAVTEVGKPFDPKVTTSYTNASPMTVYDSLGNSHQVMQYFVKRAADAAGNSVYDVYYSI 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 G G P F + + + +S ++P + + Sbjct: 300 DGQAMAPTTETGGVWGNPTQFTFNKAGVMTSATTVNLSFAAPGGGTTPADPLAVSVNYAG 359 Query: 358 SKKFLWN----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + ++ N+ L+ Y + +A L Sbjct: 360 TTQYGSAYALKAVPDGYTSGEFRGINIGADGSLVAQYTNGETSIVGTIVLADFANLQGLQ 419 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 N W E S L + + + + V++ +EL +I +++Y + Sbjct: 420 PVGNN--AWKETATSGQPILGQPGSNGLSKVVGQATESSNVDMSKELVNMIIAQRTYQAN 477 Query: 462 NKLIMFTDKMLQTLLEGV 479 ++ I D+++Q L+ Sbjct: 478 SQTIKTQDEIMQVLMNLK 495 >gi|302343763|ref|YP_003808292.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM 2075] gi|301640376|gb|ADK85698.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM 2075] Length = 574 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 63/433 (14%), Positives = 148/433 (34%), Gaps = 21/433 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 + ++ + ++ N + Q + N+ N + Y R+ + V Sbjct: 3 GIYSMMDISRWALNASVDQLDVVSHNVANVNTPGYSRQVAVLATRNPQYSSKGYFGNGVQ 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 T + L A++S S E + A++ + I+ L ++ Sbjct: 63 TTTVMQYVDKLLLGRLTANTSDTSYYSAKLSQLTRLEAL-ANEASDTGLGAQITSLFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S N + ++ + A + Q F + A ++ ++ D D ++ +S + Sbjct: 122 QDLSNNPESSAVRASLQETASNMAQRFQSVANDMLSVQRDIDGYLKDAVSQANLICRTIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I+ S H A+D+ D+R L +++ ++ IS + + V TS G +L V Sbjct: 182 DLNLKIQQSEVSGHSANDYRDERQRQLNELAGLMNISWYEDSTGAVNVQTSSGKSLV-QV 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + +V +S + + G I A L +RD+ + Sbjct: 241 NYPGDNDPDPLAFEERLGDGYEHNQLVWTSGGLVMDYTEITGGSIGAWLDVRDNQIEDML 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----LDNKLCQGISETICVNP 342 + ++++A+ +I ++ + + A + E + + Sbjct: 301 DYMNDLAKTIIFDVNKLHASGAGLSAMTSVTGAYQAQSASAALNSADNLAYGDEIVAGSF 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 R ++ K ++ ++A + + S + A T Sbjct: 361 DIWVYQGGTRIKTTIDVKPTDSLDDIAAAINGVTGLNASVSSLNTLTIHADEGAEFTFAN 420 Query: 403 YARNSIGWLEKNR 415 N + L N Sbjct: 421 DTSNVLAALGVNT 433 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 112/305 (36%), Gaps = 6/305 (1%) Query: 177 IKFKTASKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + +LD RD + + + ++ + + + + + G + +V Sbjct: 275 MDYTEITGGSIGAWLDVRDNQIEDMLDYMNDLAKTIIFDVNKLHASGAGLSAMTSVTGAY 334 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + ++ ++++ + V S + +IK + ++ + Sbjct: 335 QAQSASAALNSADNLAYGDEIVAGSFDIWVYQGGTRIKTTIDVKPTDSLDDIAAAINGVT 394 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L S S + + +++ A+ ++ L N + D G Sbjct: 395 GLNASVSSLNTLTIHADEGAEFTFANDTSNVLAALGVNTFFDGSTATSISINETIANDVG 454 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + L+ + + + D + + VT E + L Sbjct: 455 RICAGRIGDDGELS-----KGDNTAALDIADLKDSDSMLGDTVTYNESLISWAASLGTTI 509 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S++ D + + + + + GV+L EE+ +I+ ++SY ++ ++I +D++LQTL Sbjct: 510 SNATDSYSFATETTSSLENLRDSMSGVSLDEEMVRMIQFQRSYQMAAQMIQVSDELLQTL 569 Query: 476 LEGVK 480 + VK Sbjct: 570 IGIVK 574 >gi|220905263|ref|YP_002480575.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869562|gb|ACL49897.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 715 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 33/283 (11%), Positives = 92/283 (32%), Gaps = 12/283 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 L + N + + + NI NAD + Y RR + V Sbjct: 2 LNGLLNIGKTALGASQAWISVTGSNIANADTEGYSRRYVDQRDAGTITAKPGGESLGVNA 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 ++ S+ + + + E + ++ + + K + Sbjct: 62 QQIMRFFDAFLERSYVRQSTNSSRWKEQDMILSSVENLF-NESNRAGISSSLDKFFKGWQ 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 ++ ++ ++++ A+ + F+++A ++ I+ + D I+ + + + Sbjct: 121 DLTQLPDDNAYRESLLSQADNLSDMFSSTAAGLKAIQNEMDVSIKQSVDRINALSRGIAD 180 Query: 173 VNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I T + + LDQRD ++++++ ++ + TI + V + G L + Sbjct: 181 LNRQITTNTVDGVSNPNALLDQRDQMVRELASLVDVETIDNGKGNFTVQLTTGQPLVQGQ 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 ++ + + + Sbjct: 241 NVNVLEVMGPRSESHLSVGSAYKGSIEFQGTDNHEYTVDIVTG 283 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 1/243 (0%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + SN + + ++ + + +S P M + Sbjct: 474 TTGEFRNTDTGSNTLDFSSITPPGTVNFDPAHHTLQDVCNVINSSFPDASAPGLNMLKAT 533 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + N S + + Sbjct: 534 IQDGKLLIEANPACNVSFAMGVDSTGLMAALGINTFFTGDSATNMAVSSQLHSNVNLIAA 593 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 N + G + +K +N ++ EY + + ++ Sbjct: 594 GAVNGQN-QANKGDNVTATAIGELASKKVTVSTTWKTVSNQSIGEYYATLVTTVGADKRL 652 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + + ++ GVNL EE+S LIK + SY + KLI D+MLQTLL Sbjct: 653 AKTNAEYHKALATDLEDRVTSVTGVNLDEEMSNLIKFQHSYTAAAKLITTADQMLQTLLG 712 Query: 478 GVK 480 + Sbjct: 713 LKQ 715 >gi|21242721|ref|NP_642303.1| flagellar hook-associated protein FlgK [Xanthomonas axonopodis pv. citri str. 306] gi|21108196|gb|AAM36839.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 624 Score = 134 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 116/446 (26%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S S+ + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + + N + + ++ + + + Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|84388097|ref|ZP_00990993.1| flagellar hook-associated protein [Vibrio splendidus 12B01] gi|84377164|gb|EAP94034.1| flagellar hook-associated protein [Vibrio splendidus 12B01] Length = 626 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 61/401 (15%), Positives = 136/401 (33%), Gaps = 19/401 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53 + N A +Q + NI NA+ + Y R+ + V V Sbjct: 3 SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGVNDPRQYGGQSYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ + ++ + M + +++ DS+++ Sbjct: 63 NVRRSWDQFAVKELNLSTTNAANKGDTEANLDMLSSMLSSVASKK-IPENLNEWFDSVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A V + N V++ +K++E+ I + + E+ V Sbjct: 122 LADTPNDVGARKVVLEKAGLVTKTLNEFHETVRQQSDSTNKKLEVGIERVNQIAVEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D DQ + L+ ++S ++ R+N V+ +G TL Sbjct: 182 QRLMMRTP---GPHNDLRDQHEKLINELSGYTKVTVTPRSNAEGFNVHIGNGHTLVSGSE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ T + ++G + + + GKI A+L +RD +P ++L Sbjct: 239 ASQL-KLVDGLPDTHQRRLAIVEGKSLKPITSNDI-DGKIGAMLDMRDEHIPDIMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC--VNPQYRSNPSF 350 +A + + G I + + + + Y + S Sbjct: 297 LATAFSEKVNSLQSQGLDLNGNVGQDIFTDVNSERVAKSRVTAGSQSKADVAVYIDDTSA 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L+ G K + + + +S F D + Sbjct: 357 LKGGEYGLKYDGSDYVVTKPDGETVKVSTNSAGNAFYLDGM 397 Score = 96.6 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 34/342 (9%), Positives = 96/342 (28%), Gaps = 5/342 (1%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVL 197 + I + + + S+ +N + + ++ R Sbjct: 284 DEHIPDIMDELGRLATAFSEKVNSLQSQGLDLNGNVGQDIFTDVNSERVAKSRVTAGSQS 343 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDG 256 ++ I ++ ++ + Y + + + ++ + + + Sbjct: 344 KADVAVYIDDTSALKGGEYGLKYDGSDYVVTKPDGETVKVSTNSAGNAFYLDGMRVEVRN 403 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 + P A +Q+ Q E + + +A Sbjct: 404 PPELGEKLLLRPTRNFAAQIQMETKDPRDIAAQSYEASTTFAKGSAGFKILAAGQLREFE 463 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + ++ + +G + ++ + N K A Sbjct: 464 VIVSPKGEQFAVTDPKGNILMQPQPYPPEGPVTINGTTFELTSGAVANDKFTANLVPSEG 523 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + + T+L+ N S ++ L + + E Sbjct: 524 DNGNLRKLQDLQTGKILNDGESTILDLYHNLNTNTGLKASTANRLSDIATLEKESAQERI 583 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 584 ASVSGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625 >gi|327193059|gb|EGE59971.1| flagellar hook protein [Rhizobium etli CNPAF512] Length = 434 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 52/481 (10%), Positives = 112/481 (23%), Gaps = 48/481 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119 + + I + + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ + ++ + + Sbjct: 121 GFQLMGYSYDSG-----------------------SPAVVVNGFDGLVPVNVNQDGLTAI 157 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + S + +V + + + + V L V D F K Sbjct: 158 ASTSGVFKGNLDSNANVAPVAPATLPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTK 217 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + P V A+ + ++ + + Sbjct: 218 TAVAAAPPPAPPAAAATWEV--------------AMFRNANAATGGTTSFPYSAGGAVGT 263 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D D Q I+ Q + S + Sbjct: 264 GSITFDRDGKLLTGGAINIT-------DGVTGQTIAMDFSGLTQLGAAFSGTGTPNGQAA 316 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 317 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 373 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 374 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 433 Query: 480 K 480 + Sbjct: 434 R 434 >gi|313901443|ref|ZP_07834901.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313468293|gb|EFR63749.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 406 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 42/478 (8%), Positives = 114/478 (23%), Gaps = 72/478 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + I NI N + Y + Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGYKSSRVTFK----------------EL 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F++ L S+ G R + + + + + N Sbjct: 45 FNQTLRGASAPAGPAR------------GGTNPIQIGLGTALGGIDVIHQ--AGNPQVTG 90 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + + D + E + N + Sbjct: 91 VVTDMAIQGDGFFVLQDATGGYAYTRAGDFRLDAEGYLVNADGLRVLGWQAQGGVLPARD 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + S + S+ + + +++++ + Sbjct: 151 ALNLGAVRVPVDLAVPAQASTRVTWSSNLDATAPTSSTLTQAIDVYDSLGNPHTLIFTFT 210 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +++ + +++ GS LL + Sbjct: 211 RTGSNQWSWNAAAAADPATSLGSGTLTFSSAGLLTAGSPGTVNY---------------- 254 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ QY PS Sbjct: 255 ----------------------SPPGADRMTLTVDFAGLTQYAG-PSTAEATADGYPAGQ 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + + + + +A L R+ + E N S + Sbjct: 292 LTSFSVDASGTITGTFSNGMTQPIAQVALAAFANPAGL---LRDGNLYWESNNSGVARIG 348 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ V+L E +I ++ + ++++I +D+MLQ L+ + Sbjct: 349 EAGTGGRGSVTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVNLKR 406 >gi|218135315|ref|ZP_03464119.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC 43243] gi|217990700|gb|EEC56711.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC 43243] Length = 606 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 35/388 (9%), Positives = 104/388 (26%), Gaps = 20/388 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PEN 49 + +A + N+ N + K Y R+ + + Sbjct: 6 TGLYVGSSGLRSAQTALNTTAHNLANVNVKGYTRQQVALSSAEYFKIGQTITQDKSYGVG 65 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + R ++ D + +G E + + + + L++ Sbjct: 66 VDTLAIRRVRDDLIDAAYRQENGRLGYYSTQYDAVVEIESLFG-ELNGVTFEDSLKDLKN 124 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++ S I +I + + + + ++ + + ++ + + Sbjct: 125 AINELSCEPESTIKRSALIQMSTTFIDRAGSIYKGLKDYQTTLNTKVSNTVDRINELGET 184 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 ++ +N I S A+D DQRD L ++S ++ +N ++V + + Sbjct: 185 ISSLNKKITQVELSGERANDLRDQRDKALDELSAYAKVTYQETDNKTLLVTLEGFSFVTS 244 Query: 230 TVPRDINFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + E ++ + F + + G++K LL R + Sbjct: 245 FGVNKMGTEDIDGTGLLRPVWEAFNNRAVFNDFEEITAINNNDIGELKGLLLARGNTTAD 304 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + + + ++ + Sbjct: 305 YTDVPVRPEAKDYAGGDTDPQYLADYAQYEKDAEYYNKYIEPSVILSTMAGFDKLVNGIV 364 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 ++ + + + Sbjct: 365 TSLNDILCPQTTYDSATKLTYTDNNGNT 392 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 5/308 (1%) Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 N + D Q +++ ++ Y L Sbjct: 297 ARGNTTADYTDVPVRPEAKDYAGGDTDPQYLADYAQ---YEKDAEYYNKYIEPSVILSTM 353 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA--LLQIRDSVVPIFQN 288 D + + D + + +I + D Sbjct: 354 AGFDKLVNGIVTSLNDILCPQTTYDSATKLTYTDNNGNTKEIPGCEEITNADGSKTYRYK 413 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 LD+ + +E S +I + D + ++ + N Sbjct: 414 VLDKEKSSVGMDDNETMGTELFSRKNTERYIKINVNGEDMYVFNTQNQFGSDSDYTLGNI 473 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + KN G + + + + Sbjct: 474 EVNPTAAQHKELIPLSKKNDGGEDMDKAMELLEAWNVKFAAISPSKYAKEDFMSFYDSVV 533 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + T V+ +EEL +IK +Q+YN +++ I Sbjct: 534 ANVATTGEVLKGMVNTQSSMADGYDSQRMMTESVSSEEELQNMIKYQQAYNAASRYINVI 593 Query: 469 DKMLQTLL 476 D+ML+ ++ Sbjct: 594 DQMLEHIV 601 >gi|303240279|ref|ZP_07326798.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592189|gb|EFL61918.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 439 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 42/480 (8%), Positives = 106/480 (22%), Gaps = 43/480 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + I N+ N + Y Sbjct: 1 MMRSMFSGVSGLRAHQTKMDVIGNNVANVNTVAYKSGRVTFQEVFS-------------- 46 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A ++ + ++ T S R N ++ Sbjct: 47 ---QTIKGAGAPDTATGRGGTNPMQVGLGIGVSSVDTITTRGSLQRTD------NPTDLA 97 Query: 123 LGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + I + ++ Sbjct: 98 IEGDGFFIVKGGSADTYRFTRAGNFGIDKTGNLVTGSGMNVYGWQAYTRETDGTYNYDTE 157 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + D + + I+ S++ N D + V + + Sbjct: 158 NPIEPINLYSDIPNKNKRMIAAKATTSSVFAGNLDASYESLGSGASAGNVQFSVPMTVYD 217 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + N V SS S F ++ +A Sbjct: 218 SLGNSYSINVDLWKISVGSSGSEWNWAIDTGSGSTASSASGTISFDSEGQIIASG----- 272 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 I+ + + Y ++ S Sbjct: 273 -----------TSVNPAISIIPPESVGSEPIDVLFDFSKLTMYSADSSAKPTSVDGYSTG 321 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS-HD 420 ++ + Y + + +A L + N ++ S Sbjct: 322 TLVSFSIGSDGIITGIYSNGQQQPLGLIALASFENPAGLQKSGNNM--FIPTTNSGDFKK 379 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ V+L E + +I ++ + ++++I +D+MLQ L+ + Sbjct: 380 GVKAGSEGVGTLNPGTLEMSNVDLSTEFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 439 >gi|114320057|ref|YP_741740.1| flagellar basal body FlaE domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226451|gb|ABI56250.1| flagellar basal body FlaE domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 430 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 113/483 (23%), Gaps = 65/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS- 57 F + N A + NI N+ + + + Sbjct: 2 SFGTSLTGLNAAQSELNITGDNIANSSTWGFKESRPEFADLFASSNLGVTGLAIGQGVRL 61 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +++ + F L + + + E + Sbjct: 62 QNVGQQFSQGQFDFTENSLDLGISGKGFFRLSD-------DGDISYTRSGAFQLDREGWI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L D +V D + EL + T Sbjct: 115 TNSAGKRLTGFAADGDGNIVG----------------DGQQELRVETGNVAPEATTEARI 158 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 ++ LD D L V D T E Sbjct: 159 QANLNAGAEIPPAYTLDADDRLADFDQLEWVGPDENNPVPGAVFDPRDTATFNE----ST 214 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + +S +N FI G + V V+ Q Q Sbjct: 215 STTFFDSLGRQHTANFYFIKGNDNDWYVHTEVDG-----------EVLNNGQPQPISFGP 263 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + D + L + + Q+ + + Sbjct: 264 NGLIEGNA---------------TFDYTRALADAEDLDFELDLESLTQFGTPFAVSDITQ 308 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ +++ + + + ++ V + L W+ Sbjct: 309 DGFAAGEFSSLDVSEDGTIFARFTNGQSEVLGRVGVTKFPSQENLQPVGD--TEWVATFE 366 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + F I V++ E+L +I +++++ + K+I D++ Q + Sbjct: 367 AGEPVVGTAGTSDFGSIESGALEQSNVDISEQLVKMIVAQRNFSANAKMISTEDQITQEI 426 Query: 476 LEG 478 L Sbjct: 427 LNI 429 >gi|304570583|ref|YP_388203.2| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 547 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 53/554 (9%), Positives = 115/554 (20%), Gaps = 81/554 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL A + ++ + NI N + + + + Sbjct: 1 MSLTASMWTGISGLLAHGERMNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + A + F A+ + + R Sbjct: 61 GRGVGIGTIYGDFSQGSFETTTEATDLAIGGRGFFAV-----SPKGEETAYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVID-----------------------------NAEEVVQNFNT 140 E Y + +L I+ Sbjct: 116 DKEGYLVDPHGYVLQGWQIETPRPSLATSTAGSVSSTSKIKGAGVPKDIQLPGFTAEPKH 175 Query: 141 SAREVQKIRADADKEIELEISNLRRF--------------LSELTVVNDAIKFKTASKHD 186 ++ D + + LSE + Sbjct: 176 TSNVTIISNLDDASGGDNSTNAANPMFALFNSWDGTAEPPLSENSFAYQTTIKVYDEGGT 235 Query: 187 AHDFLDQRDVL-----------LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 AH+ D + + I+ + + + + + Sbjct: 236 AHNLTIYYDQVASDTISGEGSGQKHWEYIVTMDPADEQRSINGIDFKGTPAAGMLMAGTL 295 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS---------VVPIF 286 F+ S P + + V P Sbjct: 296 TFDSSGQLIDQSAFTPGSSATGSMKDLSNWNPTTFSTNGYPMFVANFSGISNASYVTPNP 355 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 L DP S V + L + Sbjct: 356 DPAAQPYIMELNLGLKNSDPSTWASAGVSNASLVGTNVANLPSLGNQAERQSSATTSFSG 415 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + S + L Y + + + + L N Sbjct: 416 SSSTPTRYQDGYTFGFLQNVTVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGN 475 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 E N S + + ++ + V+L +E +I ++ + ++K+I Sbjct: 476 LFS--ESNASGLAAPGPANANGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVIT 533 Query: 467 FTDKMLQTLLEGVK 480 TD ML+ +++ + Sbjct: 534 TTDTMLEVVIQMKR 547 >gi|309788151|ref|ZP_07682757.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1617] gi|308924003|gb|EFP69504.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1617] Length = 366 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 50/364 (13%), Positives = 121/364 (33%), Gaps = 19/364 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + S + Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSPQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQE 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +S + + G + +L R + +N L Sbjct: 239 STARQLAAVPSSADPSR-----TTGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 293 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + ++ G K + + + + ++ Sbjct: 294 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGDTVTDASAVL 353 Query: 351 LRDG 354 D Sbjct: 354 ATDY 357 >gi|163742565|ref|ZP_02149951.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] gi|161384150|gb|EDQ08533.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] Length = 440 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 57/489 (11%), Positives = 139/489 (28%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M++ + N + + ASI NI N+ Y R T + S + Sbjct: 8 MTISSSLNAGVAGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMSSSGGTYSAGGV 67 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111 R+ N + D+ L + S+A + + M + N + R + Sbjct: 68 RTTNVRLIDERGPLVSTSNATDLAVRGRGMLPVTSMNEVETGAANPQMMLTTTASFRTNA 127 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S +L + + ++ ++ +R + +K + + ++ Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDALEPVRFNVNKLSGEPTTEMSLGVNLPA 187 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ T+ + + +I + + +N ++ T T Sbjct: 188 TATESTAAGTSENLSIEYYDNLGKSESLQIEFVPTVPATGESNEWTMIITDTATGSTPIG 247 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + F D S +AV A S++ Sbjct: 248 EYTLTF-----------------DDNRTSGGALNAVAATTGGAYDAATGSIIVPVAGGPM 290 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E+ +IG + ++ Sbjct: 291 EINIGMIGDDNGLTQLSDTFAPASISK--------------------------------- 317 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + +Y ++ P+ + ++ R ++ Sbjct: 318 ----DGAPVGNFTGVEIDEAGYVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 371 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S S+ L + I ++ EL+ +I+ +++Y+ + K+I D+M Sbjct: 372 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 431 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 432 LQETTNIKR 440 >gi|157376210|ref|YP_001474810.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] gi|157318584|gb|ABV37682.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] Length = 638 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 55/404 (13%), Positives = 124/404 (30%), Gaps = 24/404 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + N A+ + Q A NI NA+ + Y R+ + Sbjct: 1 MSM-NLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRAGSEFYGSGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + + L ++ + + + + + + + + ++ Sbjct: 60 YISDVKRIYNDYAARELRIGQTSASEAQTTHTKMSELDQLFSQ--IGKAVPQGLNDFFAG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S S + + +V+ +A ++ + N + + +I + EL Sbjct: 118 LNSLSDLPDDIGIRGSVLGSAGQLATSLNQMQSHLDGQMKQTNDQIVGITDRINEISKEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD++D L+Q++S+ ++ I + V L Sbjct: 178 GHINQELMKSQGEDAQ---LLDKQDALIQELSQYSEVNVIPLDTGAKSVMLGGAVMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + I S + G+I AL + RD + Q +L Sbjct: 235 EVSMAIGTTPG--DPFGRESQITASIGTHSQVIDGSKLGGQIGALFEFRDETLVKAQQEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++ + +F++ + G I I D + + + + Sbjct: 293 GQLSLGVADAFNQAQKEGFDLNGEVGKDIFKDINDPTMSVGRVGALSSNTGTA------S 346 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 LR S + N L+ D+ N + G Sbjct: 347 LRVNIDDSGQLSGNSYELSYTAPATYELTDTLTGNVTPLTLNGT 390 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/358 (9%), Positives = 97/358 (27%), Gaps = 7/358 (1%) Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + V FN + +E + + K+I +I++ + + ++ + Sbjct: 288 AQQELGQLSLGVADAFNQAQKEGFDLNGEVGKDIFKDINDPTMSVGRVGALSSNTGTASL 347 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + ++ T +GT L I+ + Sbjct: 348 RVNIDDSGQLSGNSYELSYTAPATYELTDTLTGNVTPLTLNGTQLDGAGGFTIHIDSGAL 407 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + A D+ + Sbjct: 408 ADGDKFEIRPAAGAAAGIGVVMTDPEGIAAAAPKITPDAANSGNTEIEMVSIDNRGAAGF 467 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E + + D + + + + + + +F Sbjct: 468 PLTGSELTFEINTAANTFE-VFDATGASLGAAAAFVPPSISAYGFTFDVTSTAAATDRFT 526 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +++ G +S + + + TL + + + + Sbjct: 527 FDLSFAPGDNT------NSVAMSKLSETKLMNGGTSTLTDVYEGTKLSVGGKTKAAEVAM 580 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q V++ + GVN+ EE + L++ +Q+Y S +++ ++ TL + Sbjct: 581 GSAQAVYSQAYSRVQSESGVNIDEEAANLLRFQQAYQASARIMTTASEIFDTLFNSTR 638 >gi|237653583|ref|YP_002889897.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] gi|237624830|gb|ACR01520.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] Length = 450 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 42/484 (8%), Positives = 106/484 (21%), Gaps = 47/484 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 F + + + +S+ I N+ N + + + + + Sbjct: 2 SFQQGLSGLSVSSKALDIISNNVANTNTIGFKTGSAIFSDVFAASLTGSISGKQVGVGAT 61 Query: 57 --SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + L ++ + F + E + Sbjct: 62 LGAVRQTFTQGNLTTTNNPLDLAINGDGF------FVVSRENGPDVYTRNGQFELDKEGF 115 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + T ++ ++ + S + Sbjct: 116 IRTPTGERLKG---FQSPVTPGALPTPIGGLKDVQVPIVGSQPMPTSRV----------- 161 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + L Q N + T++ Sbjct: 162 ------EIGGNLDANDLSAAQRYPQLFGSTFTFPLPAGENWQDARTYNFSTSIKAYDSLG 215 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + E + + + ++ + ++V G + P L Sbjct: 216 KSHELTYYFAKVTPTPNDPVNTNENTWKVFTSVDGGYPLGVGTDGSIEDPSVIWSLTFNE 275 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + A Q + Sbjct: 276 KGTVNTPIVGPTAANPLAIPASY--------TPGADRIRFHVDFSDMRQIGGSYLITELT 327 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ + Y + + + LL N W Sbjct: 328 QDGYTGGELAGVSVGRDGIVTGRYTNGETRELAQLALQTFRNPNALLSIGNNF--WEATT 385 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + V +S V L EL +I +++Y + + I D++LQT Sbjct: 386 ESGLTAPSKAGEGVAGVVSAGMIEDANVELTNELVQMIVQQRNYQANAQSIKAQDQVLQT 445 Query: 475 LLEG 478 L+ Sbjct: 446 LVNL 449 >gi|315179405|gb|ADT86319.1| flage3llar hook-associated protein FlgK [Vibrio furnissii NCTC 11218] Length = 644 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 118/333 (35%), Gaps = 17/333 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGAQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRRYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ +R + + + + +++ DS+++ Sbjct: 63 NVRRSWDQFAVKELNLATTDYSFKRDNEENLDMLSKLLSSVASKK-IPENLNEWFDSVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A + QN N V++ +K +++ I + + E+ + Sbjct: 122 LADTPNDVGARKVVLEKAGLISQNMNDFHETVRRQFDVTNKGLDVGIERINQLAVEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +DQ + L+ ++S+ ++ R N ++ +G TL Sbjct: 182 QRLMMRTP---GPHNDLMDQHEKLVAELSQYTKVTVTPRKNAEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + GKI AL+ +RD +P +++ Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGKALKPITARDI-GGKIGALMDMRDKHIPGLLDEIGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 +A + + G I + Sbjct: 297 LATSFSYEVNRLQHQGLDLRGDIGADIFTDVNS 329 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 6/205 (2%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + V + + ++ G + ++ + Sbjct: 445 GSATFHIDQAGDVKEFEAYVVPVKDSDGNPTGNMQVRVQDKSGKVLLTQPYAFEDNQEEL 504 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 E + +S L G KF N+ G + + + + D Sbjct: 505 TLEIPKQDSDGKSTIFTLSRGAIADDKFTANLVPSDGDNGNLRKMINVQSNKTVDD---- 560 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 T++E N S + L +++ ++ GVNL EE + ++K Sbjct: 561 --KKSTIIELYHNLNTDFGLKLSTASRLTDVARLEKESAESRIASVSGVNLDEEAANMMK 618 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +Q+Y S+++I + T+L Sbjct: 619 FQQAYMASSRIIQAANDTFNTILAL 643 >gi|126738557|ref|ZP_01754262.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] gi|126720356|gb|EBA17062.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] Length = 446 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 46/489 (9%), Positives = 125/489 (25%), Gaps = 65/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ + N + + + A+I NI N+ + Y R T + + Sbjct: 14 MTISSALNAGVSGLSANASSLAAISDNIANSSTRGYKRIQTDFQSMVVGSKGGSYTAGGV 73 Query: 61 NM-------FDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDSL 111 L ++A + + + + + R + Sbjct: 74 GFDKLRLVDERGPLVGTNNATDLAVSGRGMLPVAALSEVESGNGNPTMMLTTTGSFRTNA 133 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y S +L + V +A ++ I+ + ++ + + Sbjct: 134 DGYLTTASGLVLMGWPANANGTVDDGPRDTAEGLEPIQYNMNQLTGEPTTEV-------- 185 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + D + ++ Sbjct: 186 TLGVNLPATETEAGGDGDTETLTVEYYDNLGSSQTLTVSF-----------------TPT 228 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ ++ + G + S G + ++ + ++ Sbjct: 229 VPATGSSNEWTMQISDSASGGAVIGEYTLTFDDSRTAGGSLASVTAVTGGAYDATTGKVM 288 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ G+ Q + Sbjct: 289 INVDG-----------------------------GPMEIGLGLIGESDGLTQLSDTFAPA 319 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 S+ + + +Y +K P+A + L + +L Sbjct: 320 SITKDGSEVGTMVGVEVDAQGYVRANYDSGASKVIYKVPLADMANPNGLKALDKQ--TYL 377 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 ++S S+ L ++ ++ EL+ +IK +++Y+ + K+I D+M Sbjct: 378 PSSQSGSYFLWDAGDGPTGEVASYSMEESATDVATELTDMIKTQRAYSSNAKVIQTVDEM 437 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 438 LQETTNIKR 446 >gi|160878463|ref|YP_001557431.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] gi|160427129|gb|ABX40692.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] Length = 620 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 101/301 (33%), Gaps = 18/301 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MSL++ + + + N+ N + + YVR+ T+ S Sbjct: 1 MSLMSSLYVGVSGLQVSQNGLNTTGHNLANVETEGYVRQQTVLQTSQYRTIGQSYISPMQ 60 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 R DK G + E + + + I+ Sbjct: 61 LGLGAETAAVRQVRDIFLDKSYRQELGRRGFYDSQYETVSEIENLMG-ELEGVAFQDSIA 119 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 +L+ +K + ++++ + V+ ++++ + + + +I IS + Sbjct: 120 DFWKNLQELAKEPDSLVKRASLVETSVGFVERSENLFKQLRDYQLNLNLKITNTISRINE 179 Query: 166 FLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +++ +ND I +++ A+D D R+ LL ++S++I I+ + + V ++G Sbjct: 180 IGDQISSLNDRICAYESNRVEHANDLRDTRNKLLDELSQMITITYRENADGRVTVN-AEG 238 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + + + + N +P +++ + + Sbjct: 239 VPFVTEDLTHHMGSMTVTQIRQRQLDEDEFNSTGMMENSDMLIPIWPTYGNVEVFNRDLI 298 Query: 285 I 285 Sbjct: 299 P 299 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/389 (10%), Positives = 114/389 (29%), Gaps = 13/389 (3%) Query: 92 ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 TH++ + + + ++ +++N++ ++ + T R Sbjct: 238 GVPFVTEDLTHHMGSMTVTQIRQRQLDEDEFNSTGMMENSDMLIPIWPTYGNVEVFNRDL 297 Query: 152 ADKEIELE-ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGI 207 ++ I +L+ + + + + + D+ + + + Sbjct: 298 IPNPVDNSDIGSLKGLILARGTKVAKATDIPIAPNKDNYLDEFGDLKEDEYNLALKDYKE 357 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + N ++ + I + + E + +S+ Sbjct: 358 AVKTYNKTIEPSIVMSTQAQYDQLIHGIVTKINDILCPNKEVVIAAGTTIQLSNGDTYTY 417 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 K + + ++ + I E+ + L +D Sbjct: 418 DKDTVIKIFDDENAPIGINGEGGTELFSRKSMPRYMDYQEITLANGDTILAKIYNEEDEA 477 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 N + VN + + S + S + ++ + F Sbjct: 478 NNYSLYTVGELVVNQEMIEDKSKIPLSQSSNTGDY--------DIKTTERLLKAWQEPFA 529 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + + + +Y IG + H + + + I + +GV +E Sbjct: 530 TLSPNTLTKSN-INDYYNALIGGIATTGERYHTIVKSQEGMVTSIDNQRQSVLGVASDDE 588 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L+ LIK + +YN + + I D+ML+ ++ Sbjct: 589 LTSLIKFQHAYNAAARYINVIDQMLEHIV 617 >gi|308050372|ref|YP_003913938.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632562|gb|ADN76864.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 468 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 47/485 (9%), Positives = 119/485 (24%), Gaps = 31/485 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN + + N A + + NI N + + N V Sbjct: 2 SFNISLSGLNAAQKDLNTTSNNIANVNTIGFKESRAEFADVYNNSLFTNSKTNVGAGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F + D + + ++ Sbjct: 62 AQIAQQFHQGALSFTNNALDLAINGNGFFVTNSELGGQDFS----YTRAGAFKLNDSNFM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L ++ V ++ + VQ + +I+ + +N Sbjct: 118 VDSQGNYLMALPVNADGSVQSVSLSTTKPVQIPQTAGQPAATSDINMSMNLPANDVEMNP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT--SDGTTLFETVPR 233 D D + + I + + Y G +L Sbjct: 178 -------------ANFDPTDPTTYNTATSVTIYDSLGEPHIQTTYFVKPTGGSLNNNNQW 224 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 N + D + + + Sbjct: 225 VCFTTVDNQPVDIWDVAGGAKDSGQWGQDTNGDGVADVTNNAVGASGQTGFVMSFDDVGG 284 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + + + G+ Q ++ QY + Sbjct: 285 YIGSDPALIQTQALGLDDPSSTTPGDGAGVIGPGADGSQRLTLKFNNPTQYAAPFEVTEL 344 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + + Y + + +A + L + W + Sbjct: 345 SQDGATVGRLTNVEVTAEGLINATYSNGTQQALGKVALARFSNEQGLTQIGN--TSWKQS 402 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 N S + + F I + V+L EL LI ++++ +++ + ++++ Q Sbjct: 403 NDSGEPLVGEPNVGAFGSIRSAALEQSNVDLTTELVDLISAQRNFQANSRALDVSNQLSQ 462 Query: 474 TLLEG 478 +L+ Sbjct: 463 NILQI 467 >gi|260466603|ref|ZP_05812791.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] gi|259029609|gb|EEW30897.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] Length = 418 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 45/481 (9%), Positives = 107/481 (22%), Gaps = 64/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + ++ NI N+D Y R + T S Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + D + N + Sbjct: 61 TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDAQGRLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L N E I + L Sbjct: 121 GFQLMAYSYANGTPAATVNGFEGLEPVVIADQGLTATPSTAGSFSGNLPAGATAVATANL 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A+ A + ++ + + Sbjct: 181 PGANAATAQ------------------------------YTSKSSMVAYDNLGNKKLLDV 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T T D ++ G + D+ ++ + Sbjct: 211 YFTNTGTGTWQVAVFDQSKATAGTSFPYTGGALGTANLTFDTTTGKLTGTPTSVSFTV-- 268 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + Q + + + + Sbjct: 269 -----------------------------PGGASLNLDLSTLTQLGTGFTVSDAQVNGNA 299 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y D +K P+A + + L N S + Sbjct: 300 PSAIDKVQISKDGTIYAQYKDGTSKPLYKIPLADVQSPDQLKALPGNVYAQ--GTDSGAV 357 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ I V++ EEL+ +I ++SY ++K+ ++ L+ Sbjct: 358 RVGFANEGKAGSIISGALENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMDVLVNLK 417 Query: 480 K 480 + Sbjct: 418 R 418 >gi|222112272|ref|YP_002554536.1| flagellar basal body flae domain-containing protein [Acidovorax ebreus TPSY] gi|221731716|gb|ACM34536.1| flagellar basal body FlaE domain protein [Acidovorax ebreus TPSY] Length = 531 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 52/537 (9%), Positives = 131/537 (24%), Gaps = 72/537 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 F + + N +++ I NI N++ + T + V Sbjct: 2 GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L +++ F L+ + + Sbjct: 62 SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQ------MPDGSRAYTRAGNFKLDNVGNV 115 Query: 116 KNLSEDILGKTVIDNAEEVVQN-------FNTSAREVQKIRADADKEIELEISNLRRFLS 168 + ID + + F T+A + L+ Sbjct: 116 VTNDGAQVMGYPIDPVTGLRTSSTAVPLTFPTTAPIPARQTTAIKTAFNLDARTPNAKGD 175 Query: 169 ELTVVNDAIK-----------------------FKTASKHDAHDFLDQRDVLLQKISEII 205 A + + + D +Q D L + Sbjct: 176 PGATPPVAATPRTTYGTSLNVYDSQGVATPLSFYFEKNGANTWDIYNQLDDLTTTPPTVP 235 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT----------------SES 249 I+ + + + V + D + + + + E+ Sbjct: 236 AITGRLIADKNGAVAATLEPVATSVANADPALTQKDDFPTSFTYRFYGPDDQGVYAIRET 295 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ--------LDEMARVLIGSF 301 F + S P + A +++D++V + ++ + Sbjct: 296 TLSFTNPEDAWDFTYSDAPTNSLVASARLKDNLVDYAGGTSPAGGTFGVADLTDAPAAAK 355 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + ++ + Q+ + + Sbjct: 356 QSFELALMVNPSPANPNSPTAPGSNPAPGSYPVTLDLNKVTQFGTKFAVSELSQDGYTSG 415 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 N+ ++ Y + + +A L N W+E S L Sbjct: 416 ELTGINVENNGMIMTRYSNGVTRAEGQIALASFRNTQGLAAVGGN--NWVETYESGQPVL 473 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + V+L EL ++ +++Y + + I D+++ TL+ Sbjct: 474 GAPTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 530 >gi|269961605|ref|ZP_06175967.1| flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] gi|269833646|gb|EEZ87743.1| flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] Length = 637 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 60/395 (15%), Positives = 130/395 (32%), Gaps = 26/395 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ +L + +++ D++++ Sbjct: 63 NVRRSWDEFAVKELNLSTTNYA-SKLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ + N V++ A+K +++ I + + E+ V Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVANKSLDMGIERVNQLAVEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N++ V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S V + G + + GKI ALL++RD +P ++L Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343 +A + + G + + + ++ I Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYINDISA 356 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + LR G N + + D N Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAL 391 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + +A + + + L G + KF N+ G Sbjct: 476 DTKGNVIMAPQPYPPTGPVSVSLPSNHPAYKNGGATVFELSAGALANDKFTANLVPSEGD 535 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + T++ N + S + L +Q+ Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E ++ GVNL EE + ++K +Q+Y S++++ + T+L+ Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636 >gi|238788320|ref|ZP_04632114.1| Flagellar hook-associated protein 1 [Yersinia frederiksenii ATCC 33641] gi|238723566|gb|EEQ15212.1| Flagellar hook-associated protein 1 [Yersinia frederiksenii ATCC 33641] Length = 550 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 60/550 (10%), Positives = 146/550 (26%), Gaps = 80/550 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N A + + A +++ NI N Y R++T+ S V V Sbjct: 1 MNTAMSGLSAAQYALSTVSNNISNYQVAGYNRQNTIFAQSGGTLSPAGFVGNGVAVTGVN 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 E + L + + + + + ++ +N+ + + +L++ Sbjct: 61 REYNSFITNQLRSAQTQSSGLTTYYQQVSQIDNLLSNT--SNNISTTMQDFFSNLQNLVS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA------------------------ 152 N +D KTV+ AE +V F + + ++ + Sbjct: 119 NADDDAARKTVLGKAEGLVNQFQNADKYLRDMDNGVNQKITESVSQINNYADQIAKLNDQ 178 Query: 153 --------------------------DKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++ + + ++ ++ N + S + Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFANGLPLVQGPSSYH 238 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------FETVPRDINFEK 239 D I G T + + ++ S G TL + Sbjct: 239 VEAIPSSADATRLAIGYKYGSGTTLEVDESRLMTGSLGGTLKFRSEALDSARNQLGQLAL 298 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + ++ F ++ S +K D+ + + ++ Sbjct: 299 VMADSFNTQHKAGFDANGDAGTDFFSFADPTVLKNARNQGDASLTVAYTDTSKVQASDYS 358 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + A+ +KD + + V + + +D +V Sbjct: 359 VEFDGTDWQVTRLSDNTKVPANPVKDASGNTTGLSFDGVVVTIDNGTTGAESKDKFTVKT 418 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----------GINTNVTLLEYARNSI 408 D + D V + T + Sbjct: 419 VSNVAANFQVAITDSSKIAASGSKDSGASDNVNAQALLDLQTQKLVGGKATFSGAYAGLV 478 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + ++ + GVNL EE L + +Q Y + +++ Sbjct: 479 SNVGNQTNTAKTNSAAQANIVTQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVMQTA 538 Query: 469 DKMLQTLLEG 478 + LL Sbjct: 539 STLFSALLGI 548 >gi|258512522|ref|YP_003185956.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479248|gb|ACV59567.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 481 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 63/495 (12%), Positives = 160/495 (32%), Gaps = 36/495 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + + + + + NI+NA+ Y + + Sbjct: 5 TFSPLYIGLSGLQAMQEAESVVGNNIDNANTPGYAQETVNFAENVPYPPEPGYGPLVAGQ 64 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V+V + + +D + S S E + ++ +NS + + Sbjct: 65 LGQGVSVQSVARQASWFYDVQDRQNQSTYQFYTTRSSVLTQIEGIL-NEPSSNSLQNAMD 123 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + ++ S + S+ + VI V Q FNT ++++++ + + ++ + Sbjct: 124 QFFSAWKTLSTDPSDTAARQAVISQGNVVAQTFNTVIEQLEQLQQNLVDTVNSQVQQFNQ 183 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + L + I+ + + LDQ+ +L K+S++ ++ + + V +G+ Sbjct: 184 YAQNLLSIQQQIQTVQQYGENPNQLLDQQAQILDKMSQLANLNLSQNADGTVNVSIGEGS 243 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 N ++ T++S + S G ++ + Sbjct: 244 ----------NSVQVLKEDPTTKSITLTQVSSSKLSAITGGQMAGNLQGYEDV-----AQ 288 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 L+ + +++ +A + L + Q ++ ++P Sbjct: 289 LLMNLNAFLNAFAEAVNQQSQVAL-FQTPVNLDTSASNGVFSGGQVQVVATANDLHPIPS 347 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + S AG + + I TL + Sbjct: 348 LDASGDNSTELAVVNLQATPLQNAGVSTSYAYTYNDPWSGSSSSASFEITG--TLDQALA 405 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + S + + ++ + GV+L E+ S++I + +Y + K I Sbjct: 406 SMVSNIGMTASGVTSSEATANALLQQSTQLRQSISGVSLDEQASYMISYQNAYAAAAKYI 465 Query: 466 MFTDKMLQTLLEGVK 480 M+Q+LL V+ Sbjct: 466 ATFQTMMQSLLNMVQ 480 >gi|242278417|ref|YP_002990546.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] gi|242121311|gb|ACS79007.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] Length = 583 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 64/443 (14%), Positives = 133/443 (30%), Gaps = 33/443 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENV 50 MSL + Q NA + NI N++ + Y R D + Sbjct: 1 MSLTNTLSIGQRALANAQVSINTTSNNIANSETEGYQRADAVYDSLGNINSYGNSLGTGA 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +V R+ +K ++ + + + + + + + Sbjct: 61 DIVAIRANWDRFIEKQFLIALGSLSCSEAQLGYLSQMDSVF-NQSEEQGLAAAQDEFLSA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 S + ++ AE ++ N+S E++ + A + EI +++ + + Sbjct: 120 WNGLSTYPDSLAEREDLLGEAESLLYGLNSSYSELRDMSASVESEIVDQVNTANELIDSI 179 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 ++N+ I ++ D ++ + RD ++++ E+IG+ + + +YT G L E Sbjct: 180 GLLNEQI----SANPDNYELVASRDQAIRELDELIGVEVLSYEDGSTKIYTETGHPLVEG 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA---------VPKGKIKALLQIRDS 281 + T + G +V S + G I L RD Sbjct: 236 EETHHLAVAYDDDTSKTGLFWENGSGGLVDITPMSDESGDAVSGRITGGSIAGLFITRDE 295 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + ++LDE A LI + E + G++D L + Sbjct: 296 HIQPTLDRLDEYAAALIWETNRAHSQGAGLEPHTAVEGTYGVEDQTAALSDSGLDFEDRI 355 Query: 342 P---------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 NP + L S N + A Sbjct: 356 TSGEFTIHTYDADGNPEASITISIDPSTDSLDDIVSNINASLGGSLTASVNADGELAIEA 415 Query: 393 GINTNVTLLEYARNSIGWLEKNR 415 +++ E + + N Sbjct: 416 VGDSSFEFGEDSSGFLAAAGINT 438 Score = 81.6 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 74/271 (27%), Gaps = 6/271 (2%) Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK- 273 + S G L + + + S+S F D + Sbjct: 313 WETNRAHSQGAGLEPHTAVEGTYGVEDQTAALSDSGLDFEDRITSGEFTIHTYDADGNPE 372 Query: 274 -----ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 ++ DS+ I N + L S + +A + + Sbjct: 373 ASITISIDPSTDSLDDIVSNINASLGGSLTASVNADGELAIEAVGDSSFEFGEDSSGFLA 432 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 N + ++ + + +A + + + Sbjct: 433 AAGINTFFEGSSAGDIAVNNYVASNPSHLNAGEVGSDGTVASGSNSTAQSINDLLSRDVS 492 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T+ TL EY + + S +E + GVN+ EEL Sbjct: 493 IGEGANATSATLTEYLSAIVSDVGAAASTMETRVTCDTAAAQIYAEQQESVSGVNVDEEL 552 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L + +Q Y + ++I T M+ T+L V Sbjct: 553 VNLTRHQQQYEAACQIISVTRDMIDTVLGIV 583 >gi|291539399|emb|CBL12510.1| flagellar hook-associated protein FlgK [Roseburia intestinalis XB6B4] Length = 613 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 66/444 (14%), Positives = 135/444 (30%), Gaps = 36/444 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49 S A + + + NI N K Y ++ Sbjct: 3 STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + +D + S++G ++ E DD + + ++ + + Sbjct: 63 VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L++ N + + I +A+ FN+ A + I+ +A++EI+ + N+ + Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218 + +N I A++ DQR +L+ ++S+I+ + Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSKIVPTEAEELPVQNSNDPELPTGANYF 242 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274 G L +T + V D S G++ G +KA Sbjct: 243 TVKIGGQVLVDTYDYETLQCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302 Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L IRD + ++ + + P +G + Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + S T + S DG S + + Y +N + SF Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGNSVDTMGVPYYMSQMNQFLRSFCSL 422 Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409 F + G + + +Y G Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + TL + + S Q S Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389 Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G ++ D+ VP + +Q+++ R F++ + + + + Sbjct: 390 DGMQASIGNSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + N ++ + + + L Y Sbjct: 450 VTGEEYALGKSDKNNGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKTDTEDGVD 509 Query: 388 ----------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + + I + + S + + Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GV+ EE LIK + +YN+S+K+I ++ L+E Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609 >gi|268316347|ref|YP_003290066.1| hypothetical protein Rmar_0780 [Rhodothermus marinus DSM 4252] gi|262333881|gb|ACY47678.1| protein of unknown function DUF1078 domain protein [Rhodothermus marinus DSM 4252] Length = 415 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 46/481 (9%), Positives = 119/481 (24%), Gaps = 69/481 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + + I NI N + + R + R+ Sbjct: 1 MIRSLRTGVSGLKSHQVRMDVISNNIANVNTTAFKRGRAAFNELLGQTLLGVGRTAGGRG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L S ++ + N + D Sbjct: 61 INPSYVG---------LGVSVGSIDVNFAQGALENTGVATDLGINGDGFFVVRG------ 105 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + N + ++ ++ +++ + L + + + F Sbjct: 106 ------GDRIYLTRAGNFTINRFGELVTNSGLQVQGWAFDENGELQSAALEDVRVPFSAT 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + R L +++ ++ VVY G + Sbjct: 160 APPKQTENIYVRGNLNAELAAGETVTVST------VVYDPQGKAKTIIIEFTRTSNPN-- 211 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + N + DG + S + Sbjct: 212 ---EWQWNLLDEDGNPLGVTITSG--------------------------------DNLI 236 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDN--KLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D I + ++ QY + + Sbjct: 237 TFDTQGNLDPTEALQTFDWDIDNDGTLESFTLNLAGADDALTQYAGSTTATVRDQDGQPP 296 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + ++ + + + + +N L + N W + S Sbjct: 297 GSLIGFSINQEGIVELNFSNGYQQKIYQLALGSVNNVNGLQQVGDNL--WSLTSSSGDLA 354 Query: 421 LHMKS-QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L ++ I V+L E + +I ++ Y S ++I +D+MLQ L++ Sbjct: 355 LGRAGVELNRTVIVAGTLEMSNVDLATEFTDMIVTQRGYQASARIITTSDEMLQELVQLK 414 Query: 480 K 480 + Sbjct: 415 R 415 >gi|167644972|ref|YP_001682635.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31] gi|167347402|gb|ABZ70137.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31] Length = 704 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 123/435 (28%), Gaps = 17/435 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + N A + A + NI N + YVR+ + V + Sbjct: 1 MSLNTILNVATSGMMAAQTGLRVVSDNIANINTAGYVRKTIAQSNLVSNGMGVGVNIDAI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S G+ + + + + D + + + + Sbjct: 61 KRATDKYMAAASLNGASEAGRSGSIATAMDNAQKLFGDPSAKTNYFATLDDVYAAFSLAV 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S +L + E+ + + D D I ++ + L ++ +N Sbjct: 121 DDPSSTLLRSGAVTKVEDFLSESKRITASLSGQIKDTDNRIAGDVDRVNDLLKQIDSLNV 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + D + + L+ ++S + I R N ++V +++G TL P + Sbjct: 181 DITRAKMAGADGTGSENVQSGLIDELSTYMNIQVSDRANGGVMVRSAEGVTLAGNGPATV 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + G V+ + G+I+ LLQ+R+ +P +QL E Sbjct: 241 TYNQSGPANGYLTVTTANSGGQVMPLAVTN----GEIQGLLQLRNKDLPNLSDQLGEFVS 296 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + A + + D D + +T D Sbjct: 297 RAAEELNRASNAASSVPAPNVMTGKDTGLDANTAFANFTGKTTIAVTNAAGAVVQRVDVD 356 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + N + + N + G + A + N Sbjct: 357 FGAGTMTVNGAPGPAFTNT--------NFLTQLNTALGGAATASFANGAMSLNTATATNG 408 Query: 416 SDSHDLHMKSQVVFN 430 D Sbjct: 409 VAIVDDATTPSTKAG 423 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 46/393 (11%), Positives = 97/393 (24%), Gaps = 6/393 (1%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + + N + ++ + +D + Sbjct: 316 NVMTGKDTGLDANTAFANFTGKTTIAVTNAAGAVVQRVDVDFGAGTMTVNGAPGPAFTNT 375 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 L + F + +N T D + S+ G++ Sbjct: 376 NFLTQLNTALGGAATASFANGAMSLNT--ATATNGVAIVDDATTPSTKAGKGFSQFFGLN 433 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 I+R++ T T + T S I + + + + Sbjct: 434 DIIRSDGYSPYETGMTATDPSGFTPGQTITLRLTDTDGSRIRDIAVAIPTGTGSMQETID 493 Query: 269 K-GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + + S + +L + Sbjct: 494 ALNSRNSGVGLYGSFALGSKGELTFTPSGAAPVTLSVVEDTTQRGTSGPSLSQLFGVGMS 553 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + +G + P ++PS L G + + Sbjct: 554 ERSTRGGLFHVD--PAMEADPSKLPFAKLDLTAAAGTPALATGDGRGALALAKAGDVTTS 611 Query: 388 FDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 F ++L Y + G + + + + + V ++ + GVNL E Sbjct: 612 FANAGDAAAAKKSVLSYGADFSGSIARKAASATSRKEAADSVQTEVNAQRQSQEGVNLDE 671 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EL L +Q++N S +LI T M L V Sbjct: 672 ELVNLTTYQQAFNASARLIQATKDMFDVLTNIV 704 >gi|332140546|ref|YP_004426284.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] gi|327550568|gb|AEA97286.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] Length = 461 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 46/483 (9%), Positives = 124/483 (25%), Gaps = 34/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + NI N + + V Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLAGGKTKVGDGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F A +++ D + + +++ Sbjct: 62 QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFS----FTRAGQFKLDSDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + D L ++ ++ V+ + + E+ + ++ Sbjct: 118 VNSNGDNLLGFPVNADGTSASVALSTTEPVRIPDSSGSPQQTSEVDIRMNLPAGDAGLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D L + + + + +++ M Y + + Sbjct: 178 QDFNPE-------------DPLTYNAATSVTVYDSLGDSHVMTYYFIKDGSPGVDNEWYV 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ ++S G G + + + Sbjct: 225 ATAIDDTLVDMTDSA-----GNDTDPATAVNSVGGNTGNAVTASKLIFSQGGDFSGMETP 279 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + K + + + S T Q+ S Sbjct: 280 DGNATLDFKMQTEALGAGILANGSDPNQQISIDFNLDVNSATPNEPTQFASAFEVTSLEQ 339 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + + + ++ + + + L + +S W E Sbjct: 340 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQ--ESSTQWKESIL 397 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I+ S VNL EL +I ++++ +++ + + + QT+ Sbjct: 398 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 457 Query: 476 LEG 478 L Sbjct: 458 LNI 460 >gi|203287743|ref|YP_002222758.1| flagellar hook protein [Borrelia recurrentis A1] gi|201084963|gb|ACH94537.1| flagellar hook protein [Borrelia recurrentis A1] Length = 441 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 51/490 (10%), Positives = 121/490 (24%), Gaps = 63/490 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + +NS Sbjct: 61 GVNPKQIGLGMTVATVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + + Q FNTS+ I DKE + Sbjct: 121 DSNRHLVNPANGMRIQGWMAESVGGEQVFNTSSDIRDLIIPIRDKEGAKATEYI------ 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 LD+R ++Q+ + + I+ N + + T + E Sbjct: 175 ----------------TFACNLDKRLPIVQQGANEVDIARGTWVVNKTIYDSFGNTNVVE 218 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + + ++G S+ +G + +L + Sbjct: 219 LR------VLKDATAPNTWNATVLVNGEENSNFTMGFDNEGALLSL-----NGQAGQPGD 267 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L E V +G + N + Q+ + Sbjct: 268 LLEFPITF---------------GVIDANAGEGGEQTVNLRLGTVGSYADSITQFADAST 312 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + + +A L + Sbjct: 313 TKAIVQNGYGMGYMENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGD--TN 370 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E + S + I V+L E+ + +I ++ + + K I +D Sbjct: 371 FTETSNSGQARIGETGFAGLGTIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 430 Query: 470 KMLQTLLEGV 479 ++LQ L+ Sbjct: 431 QLLQELVRLK 440 >gi|85712260|ref|ZP_01043311.1| Flagellar hook-associated protein [Idiomarina baltica OS145] gi|85693887|gb|EAQ31834.1| Flagellar hook-associated protein [Idiomarina baltica OS145] Length = 685 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 57/440 (12%), Positives = 140/440 (31%), Gaps = 13/440 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 M+ + K Q + A +NI N +N +YVR +P + V R Sbjct: 1 MASFDLLTKGQTAVLAHQRALAITGQNINNINNPDYVRERAEYVSNPFGGLRGVESRRMI 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L+ + Q + + + +S ++ +S++ + + S Sbjct: 61 DEYIVGQLNRSHMDVAFQNGKLDQAEPLDSLLGNT--ESSINSAVTSFFNSVQDANNDPS 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + VI AE ++ + +R + ++ + + + + +N+ +KF Sbjct: 119 SLTNRQVVISEAEGLMTRMSDFSRYLNDQENIVNERVRDSVQQINTLSKNIAELNNELKF 178 Query: 180 KTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 +++ DA+ +QRD L+++S+++ + +++ + V +G L R Sbjct: 179 GSSNVKGFDANSLRNQRDQQLEELSKLVSFDVVKSDSDAVQVNLKNGVPLVLKDGRYNMI 238 Query: 238 EKMNSYTVTSESNPI--FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + I + + RD+ + Q ++ +MA Sbjct: 239 TANSQPDTGRVEIQIESTNSSDPTKFYLKPDQLGSALGGYMDYRDNQLLPAQRRIGQMAL 298 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY--RSNPSFLRD 353 + + + ++ + +N G + D L + N + L Sbjct: 299 RIADTMNSQNQKGMDLDNQLGQKLFDLSSTPVRALDFEENTGNANINVGLLEGNSAKLTS 358 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG-WLE 412 + K + + + ++ + AG + + + EY Sbjct: 359 DNLLITKTGADTFTVQAADNQGRAIKNA---PEVTISTAGNPSAIAVEEYGIELTSANFS 415 Query: 413 KNRSDSHDLHMKSQVVFNHI 432 L + + I Sbjct: 416 AASDGDKFLAKPVEDIAGDI 435 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 47/413 (11%), Positives = 108/413 (26%), Gaps = 9/413 (2%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + Q+R+ Q + + M++ + + + + L S + + Sbjct: 281 YRDNQLLPAQRRIGQMALRIADTMNSQNQKGMDLDNQLGQ---KLFDLSSTPVRALDFEE 337 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 NA V ++ ++ K + + N + + + Sbjct: 338 NTGNANINVGLLEGNSAKLTSDNLLITKTGADTFTVQAADNQGRAIKNAPEVTISTAG-N 396 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + + + S + V + + + P D+ K + Sbjct: 397 PSAIAVEEYGIELTSANFSAASDGDKFLAKPVEDIAGDIAVAISRPEDLALAKPVRVSDD 456 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 E+ + + + V N L Sbjct: 457 LENQGSANIELESINGTSNFFDAAGKTLADGAPTGVAVDAVNSDGTFDVTLSRKNGSDIT 516 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + G S+ A+ + + + P+ S +N Sbjct: 517 LTGLSDLKNLAQQANDQAAANGNPAPFAGSPLDYDISINGQPA-----AGDSYSIEYNTD 571 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + N + N+T E + + + +Q Sbjct: 572 GFDDNRNGEAFTELQQNAQLRRSSADSDDANMTFAEGYSRVVSDIGSYVQQTRTRRDAAQ 631 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + Y GVNL+EE + LI+ E++YN + ++I + +LL V Sbjct: 632 AIEAQTQAMYEAKSGVNLEEEAANLIQFERAYNAAARIITVAQRTFDSLLNAV 684 >gi|323700469|ref|ZP_08112381.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460401|gb|EGB16266.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 516 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 51/523 (9%), Positives = 125/523 (23%), Gaps = 50/523 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPEN 49 MS+ + SQ + + N+ N+ Y + Sbjct: 1 MSISGSMYTGISGLQAQSQATSVVSNNLANSTTTGYKSVSIAFEDVFYSTVYAGGSLGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT S + +S F + + N+ Sbjct: 61 GNGVTTSSLTTDYSQGAYETTNSVTDVAINGDGFYIVVD-----PDTGNTYYTRDGGFTL 115 Query: 110 SLESYSKNLSEDILGKTVIDNAE----------EVVQNFNTSAREVQKIRADADKEIELE 159 + Y + + + ++ + Q+ + EV E + Sbjct: 116 DTDGYLVDSHGNHVQGWETEDGSITGGLVDIQIDNSQSPPQATGEVAIQVNLDSTETDNT 175 Query: 160 ISNLRRFL----SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 S+ + + A+ + D+ + T + Sbjct: 176 TSSTNPYAALFEIYDGTADPALDDSRYAYQTTITVYDENGASHDLTVYYDPVETDDGSIV 235 Query: 216 DMVVYTSD---------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + D GT + +T + +++ + + + + + + Sbjct: 236 WEYMVCCDASEDMRDFEGTDMADTSAAGLLVTGTLTFSTSGDLQSMTAFTLSDTPTDTTD 295 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + L + +P+F+ S + + + Sbjct: 296 PLAEENWVLADFDNDGLPVFECNFTGADENQTVSMNFGLSNSDFATGTGWDTTGGIDSLD 355 Query: 327 DNKLCQGISETICVNP---------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D E N S+ + + + Sbjct: 356 DMTAATTPDELPSFNTGVLSTAATTSTTSSSATYTLSQDGYAPGELTDITINENGVIEGS 415 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 Y + ++ +A L N S + F I+ + Sbjct: 416 YTNGQSQELYTFALADFTNTQGLYSEGGNLYS--ATTESGQALVGTPGSAGFGTIASNSL 473 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ +L+ LI ++ +Y ++K+I D +L T + + Sbjct: 474 EQSNVDTATQLTNLIIIQAAYQANSKIITTADTLLSTAIGLKR 516 >gi|238758104|ref|ZP_04619284.1| hypothetical protein yaldo0001_12400 [Yersinia aldovae ATCC 35236] gi|238703642|gb|EEP96179.1| hypothetical protein yaldo0001_12400 [Yersinia aldovae ATCC 35236] Length = 555 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 60/556 (10%), Positives = 148/556 (26%), Gaps = 81/556 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + + A +++ NI N Y R++ + + V Sbjct: 1 MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFLGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T+ E L SS L ++ + ++ + + +N+ + + + Sbjct: 60 TITGVNREYNAFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSTTMQGFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSA---------------------------- 142 L++ N +D KTV+ E +V F + Sbjct: 118 LQNLVSNAGDDAARKTVLGKGEGLVNQFQNADKYLRDMDVGVNQKITESATQINNYAEQI 177 Query: 143 ----------------------REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + ++ + ++ + + ++ ++ + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFAGGLSLVQ 237 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR------- 233 + + D + G + + + S G TL Sbjct: 238 GPNAYKVEAIPSSGDATRLTLGYKYGSGDTLEVDERRLTNGSLGGTLKFRSEALDSARNQ 297 Query: 234 --------DINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVP 284 +F + + + +A +G + D+ Sbjct: 298 LGQLALVMADSFNTQHKVGFDANGDAGTDFFSFSDPTTLKNARNQGDAGLSVSYTDTSKV 357 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + E D + V D + T+ + Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPANPVLDGSGKTTGLSFDGVAVSIDNGTVGPQAKD 417 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLE 402 + + + + + + + +A D+ N + D ++ TL Sbjct: 418 KFTVKTVSNVAANLQVAISDSSKIAAAGTKDGGASDNTNAQALLDLQTKKLVDGKATLSG 477 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + + + + ++ + GVNL EE L + +Q Y + Sbjct: 478 AYAGLVSNVGNQTATAKTNSTAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANA 537 Query: 463 KLIMFTDKMLQTLLEG 478 ++I + LL Sbjct: 538 QVIQTASTLFNALLGL 553 >gi|332305621|ref|YP_004433472.1| flagellar hook-associated protein FlgK [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172950|gb|AEE22204.1| flagellar hook-associated protein FlgK [Glaciecola agarilytica 4H-3-7+YE-5] Length = 709 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 58/414 (14%), Positives = 140/414 (33%), Gaps = 13/414 (3%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKNMFDKV 66 + A++ ++Q ++ NI N + YVR T V T Sbjct: 9 SIARSGVEASNQLLSTTGNNIANVNTDGYVRERTSFVAQLTGGVGQYTTERVMNTFAQNQ 68 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 L ++ + + + A+ + + A + NS + +S+ SL++ + + + + Sbjct: 69 LRRDTTNLAEHEAYWTKTAVLDNVFASEA--NSISASMSRFFASLQTANDDPTNMSARQL 126 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 V+ +AE ++ T + + + + E ++ + + + N++I+ A+ Sbjct: 127 VLGDAESMLGQMGTLSTFLTNKEREINFEFTDSLNKVNSLVESIASFNESIRIAQANNRH 186 Query: 187 --AHDFLDQRDVLLQKISEIIGISTIV--RNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +++RD + ++S ++ I T N+ +++ + G +L FE NS Sbjct: 187 DVPGALMNERDAAVLELSSLVSIETRESSNNDGSIMINLTSGESLVMQDGTFSVFEVNNS 246 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ +S + +G S N G I L + RD V+ + +L ++A + + + Sbjct: 247 ADLSYKSLQLTSNGKPTSLNLSETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTEAVN 306 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + + G I T VN + + Sbjct: 307 TQNRAGMDFDQQLGGEIFTRPITTGLNYPTNADNTSIVNGRISQGGASDITSADYHVTID 366 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + D+ + V + + Sbjct: 367 GVTAGVPPTIDVTVALLNIDGSPVTDV------DGVPISQSYPGLTAQSGVFSE 414 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 51/451 (11%), Positives = 120/451 (26%), Gaps = 15/451 (3%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + T+ + + + + M Sbjct: 264 SLNLSETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTEAVNTQNRAGMDFDQQLGGEI 323 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T I+ + Y N + I + + A I++ Sbjct: 324 FTRPITTGLN----YPTNADNTSIVNGRISQGGASDITSADYHVTIDGVTAGVPPTIDVT 379 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST---------- 209 ++ L S +T V+ ++ A + + ++ G Sbjct: 380 VALLNIDGSPVTDVDGVPISQSYPGLTAQSGVFSEVLGGMELEFSKGTGYAVGDQFLLQP 439 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + V+T+ L P + N S + V S + Sbjct: 440 TKDVADKIEVFTTRPEDLALASPIRVEAGDDNLGGAELVSTTVTNTFVDTSPFDARSSGF 499 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + + + D V G+ D + Sbjct: 500 DGAGGIHAPGAAPGGGVGAP-ASVRFNSATEYEVLDSAGTIITTVSGISSLDNLLAQAAD 558 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + ++ + + + + + N + N N + Sbjct: 559 TPGWPAAFDALDNYPGYDFTLQGEPKAGDTFAIGYNANGLNDNRNGLIMANLQNVNGMQL 618 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 AG V+ E N +G + + +++ + + + + + GV+L EE + Sbjct: 619 NNAGSGDPVSFHEAYANIVGDIGQKSANADIAVKAGEALKLQSQDWFDSVSGVSLDEEAA 678 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L++ +QSY S +L+ +M T+L V+ Sbjct: 679 NLVRFQQSYAASARLLNTAQEMFDTILSMVR 709 >gi|229826311|ref|ZP_04452380.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] gi|229789181|gb|EEP25295.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] Length = 495 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 44/502 (8%), Positives = 109/502 (21%), Gaps = 31/502 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ + I NI N + + T+ + + Sbjct: 1 MMRSLFSGVAGLKVHQTKMDVIGNNIANVNTVGFKSSSTVFSDVFYQTTQTASGPNKESN 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + + + Sbjct: 61 VGGVNPKQIGLGANVSSISKNITDPGGSQTTNNALDCMINGDSFFVTKNGGRTYFTKNGA 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + N + +D + + E Sbjct: 121 FKVDTDGTLVNSEGAKVQGWQVDPDDPNKIKPGPVSN-----LNIMSPENMYTNPEATTA 175 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ ++ D L + + + ++N + D Sbjct: 176 GYLSGNIDRTDSQIAPGSAGRTFQMNFYDNLGYEYTAKFVMKQSKNSDNAYNIELKDILK 235 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIR 279 +++ + + S T+ + V + P + Sbjct: 236 DGKSIMYNAEKKDDGSIEYTTTGWGATLSKDKQELSSVGTVDSVDDGKPNFGDPGKFNMV 295 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 L E D + G + K+++ Q Sbjct: 296 FDGTTGKFKSLVEDPSDEYDPSGMDDTVIKKMYLNIGGKTPNPFKNIELDFSQMTMFASQ 355 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + S + G K + + Y + K VA Sbjct: 356 TSSKIESTMGDVDGNGKGKMKGTMKGATIDNAGKIYGSYDNGDLKLLGQIAVASFKNPSG 415 Query: 400 LLEYARNSIGWLEKNRSDSHD-LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + ++E S D + IS V+L + + +I ++ + Sbjct: 416 LEAVGNS--NFVETMNSGKFDGVGKDITTDGGKISTGMLEMSNVDLAAQFTDMITTQRGF 473 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 +++ I TD +L+ L+ + Sbjct: 474 QANSRTITTTDSILEELINLKR 495 >gi|254508414|ref|ZP_05120534.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 16] gi|219548624|gb|EED25629.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 16] Length = 624 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 128/348 (36%), Gaps = 17/348 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLSLGSQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGTNIPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + ++ + M + I++ D+++S Sbjct: 63 KVRRSWDQFAVNELNMSTTNHAHKLDDEANLEMLSNMLSSVSSKK-IPENINEWFDAVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ + + QN N V++ +K+++L I + + E+ + Sbjct: 122 LADSPNDVGARKVVLEKSTLITQNLNDFHETVRRQSDVTNKKLDLGIERINQLALEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +DF+DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDFMDQHEKLINELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ Y E I+G + + S GK+ A+L +RD +P ++L + Sbjct: 239 ASKL-TMIDGYPDVHERRLAMIEGKGIKA-ITSKDIDGKLGAMLTMRDEKIPQLMDELGK 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 MA ++ + G I + + ++ + Sbjct: 297 MAAAFSYDINKLQSQGLDLRGDIGGLIFTDVNSDIIAESRVVTSSKSQ 344 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 51/434 (11%), Positives = 122/434 (28%), Gaps = 16/434 (3%) Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + D+ + ++ + K + H N T L Sbjct: 192 HNDFMDQHEKLINELSEYTKV--TVTPRKNAEGFNVHIGNGHTLVSGTEASKLTMIDGYP 249 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 +I+ ++ + D++I + L + + + + ++ Sbjct: 250 DVHERRLAMIEGKGIKAITSKDIDGKLGAMLTMRDEKIPQLMDELGKMAAAFSYDINKLQ 309 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + L DV I+E +++ + V + + Sbjct: 310 SQGLDLRGDIGGLIFTDVNSDIIAESRVVTSSKSQADLAVYIEDPSQLVAGEYSLQYSGG 369 Query: 239 KMNSYTVTSES--NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + E P+ D + + + + IR + Q +++ Sbjct: 370 DYYITRPSGEQFVVPVVDDAITLDGIRIDIRQDLAAGERVLIRPTRNSAAQIKMETNDPS 429 Query: 297 LIGSFSEKDPIAG---------NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 I + S + + F D I + PQ Sbjct: 430 HIAAQSYEASTTFAQGSAKFRIDEVGDLREFEVIVSPDGKQFAVTDTKGKILMQPQDYPP 489 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + N +L+ + I + T+L+ Sbjct: 490 SGPVTVQNTTFELTGGALPNDKFTANLVPSEGDNGNLLKMQNIQTEKKLNDGESTILDIY 549 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + S + L S++ E ++ GVNL EE + ++K +Q+Y S+++ Sbjct: 550 HNLNTDVGLQMSTASRLTDVSRLEKEAAQERVASISGVNLDEEAANMMKFQQAYMASSRI 609 Query: 465 IMFTDKMLQTLLEG 478 + + T+L Sbjct: 610 MQAANDTFNTILAL 623 >gi|258621055|ref|ZP_05716089.1| flagellar hook-associated protein 1 [Vibrio mimicus VM573] gi|262166276|ref|ZP_06034013.1| flagellar hook-associated protein FlgK [Vibrio mimicus VM223] gi|262170831|ref|ZP_06038509.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] gi|258586443|gb|EEW11158.1| flagellar hook-associated protein 1 [Vibrio mimicus VM573] gi|261891907|gb|EEY37893.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] gi|262025992|gb|EEY44660.1| flagellar hook-associated protein FlgK [Vibrio mimicus VM223] Length = 624 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ D++++ Sbjct: 63 NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K ++L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLDLGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R N ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + I+G + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKAIKPISARDI-GGKMEAILDMRDKHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGGPLFTDVN 328 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 44/414 (10%), Positives = 110/414 (26%), Gaps = 14/414 (3%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + K + H N T L+ +I+ + Sbjct: 210 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMIEGKAIKPISA 269 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 +++ I DK I + + R + + ++ + DV L Sbjct: 270 RDIGGKMEAILDMRDKHIPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNL 329 Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 I+ ++ + + + + + + Sbjct: 330 DVIARSRVVTSSNSKADMAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVQPVVKGN 389 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V + I + + P A +++ Q E + ++ Sbjct: 390 VYIDGLRIEVRNAPQVGERILVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 449 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + ++ +G + L +++ L N Sbjct: 450 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 509 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 K A + I + T+++ N + + L Sbjct: 510 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 569 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ ++ GVNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 570 ARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|94495405|ref|ZP_01301985.1| flagellar hook-associated protein 1 [Sphingomonas sp. SKA58] gi|94424793|gb|EAT09814.1| flagellar hook-associated protein 1 [Sphingomonas sp. SKA58] Length = 445 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 144/492 (29%), Gaps = 62/492 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 + +F + A+I NI NA Y RR T S Sbjct: 1 MSDLFIIGSSGTKAYRTAMAAISENIANAGTDGYARRTVTTAESGASTSTMSLYIAKANF 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V+ + D + +G + L + +A + + ++ + Sbjct: 61 GGTQVMGVDRASDPYLDATVRTTGMNLGSATARLRW--LTDAETAMNDSSTGVGQLMTSM 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 ++E + + + L T +D+ V Q+FN +A ++ + E + + R L Sbjct: 119 FQNMEKLAASPGDTSLRVTTLDSISRVAQSFNQTAADLTNVSDGIATEATASVQTINRSL 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S L +N+++ LD RD LQ +SE + ++ ++ + + T + Sbjct: 179 SALANINNSLLRAQPGTSAYAQLLDSRDAALQDLSENLNVTISFGAHDSAEISFAGQTLV 238 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ ++ + + G + L V + Sbjct: 239 SGNSAASLSVATNGDGSLALSLSDGTALSAPAN---------GTLGGLFSAA-QTVTERR 288 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 LD +A + + G+ + Sbjct: 289 ASLDTLAEQFVTDVNAWHAQGLTDAGDAGVPLLSY------------------------- 323 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + L D + + + N ++ + + Sbjct: 324 ----------GGGAANVAALVTDPALLALKSADGTLNGNLLTVTSTLRGNGSVEQAWTSL 373 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + GV+L E + L++++Q+Y+ K++ Sbjct: 374 VATHANLLGATQAEFDTATNRSDQAVAAREAVSGVDLDMEAADLLRLQQAYSGCAKILQI 433 Query: 468 TDKMLQTLLEGV 479 + + ++L + Sbjct: 434 AKETIDSILNII 445 >gi|94987189|ref|YP_595122.1| flagellar hook-associated protein [Lawsonia intracellularis PHE/MN1-00] gi|94731438|emb|CAJ54801.1| Flagellar hook-associated protein [Lawsonia intracellularis PHE/MN1-00] Length = 705 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 46/421 (10%), Positives = 120/421 (28%), Gaps = 19/421 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS+ +F ++ NI N + + Y R+ + V Sbjct: 1 MSINTLFGIGKSAIAGNQTALNVTGNNIANVNTQGYSRQSVRFEDRYGLNQTPGMLGQGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + S + + E + ++ + + + Sbjct: 61 HTAEIYRNFNRFVEDAYLNRFSQNTRWDEQSAIMNSIESIF-NESNRTGISSLLGEFFKG 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ S + + V+ A+ + Q N + +QK + + D I+ ++ + + + Sbjct: 120 WQNLSLRPEDAATREAVLSTAKNLTQLINDAKSSLQKTQQEMDLYIQQSVNKVNELVDAI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I + + LDQRD L+++++ ++ I + + + G L Sbjct: 180 KNINKQISATYIPGQQNPNQLLDQRDQLVRELANLVDIEVKDKGGGNFDIQLKSGQPL-- 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + +V + ++ + ++ + +I + Sbjct: 238 -----LEGQIGYTLSVGGQRVENYLKQDSKYTGTITSSGSDSHEYSFEIINPPSGGAPGS 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +D N +K+L+ Q S+ + + + Sbjct: 293 MRVSLDGGKTWLRNEDGSELNVPIPTTPGETIKVKNLEISFDQDPSQLVSGDRFDVIPKT 352 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L + L + + + L+ NSI Sbjct: 353 GLYWNSPTRPPINITPQTLNDGTENTGRLTGGKLTAYFSTRDYNAGRYIDKLDALANSIV 412 Query: 410 W 410 W Sbjct: 413 W 413 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 6/299 (2%) Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A+ + + + + + + ++ + ++ GT+ + S+ + Sbjct: 408 ANSIVWEVNRIHSQGAGEQKMTYSLGSSQVNRTDVPLGTSQSGLAYGNRLTTGNLSFQIY 467 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD-----SVVPIFQNQLDEMARVLIGSF 301 E+ G + S + + N + + S Sbjct: 468 DENGKPLPVGTPPNGIPESLDLDPGTPGVQNFDPSIHSLEDLVNAINHPNNYGEFMKASI 527 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + D L + + K Sbjct: 528 VNGSLQLTSRPGTSFAAKTDTTGLLAALGINTFFQGSDATDMAIKPDVIQNTNFINAGKV 587 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 N + G + D + T+ TL Y +G + + + Sbjct: 588 NANGEVSTGDNSIAKELAD-LATKEVTISTGWETTHQTLGAYYGALVGLVGSDTRTAKFN 646 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + N + + + GVNL EE++ LIK + SY + KLI D+MLQTLL + Sbjct: 647 ADYNKTLSNELEQQALSITGVNLDEEMTQLIKFQHSYTAAAKLITTADQMLQTLLSLKQ 705 >gi|258625283|ref|ZP_05720191.1| flagellar hook-associated protein 1 [Vibrio mimicus VM603] gi|258582456|gb|EEW07297.1| flagellar hook-associated protein 1 [Vibrio mimicus VM603] Length = 624 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 126/347 (36%), Gaps = 17/347 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ D++++ Sbjct: 63 NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K ++L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLDLGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R N ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + I+G + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKAIKPISARDI-GGKMEAILDMRDKHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +A + + G + + + ++ + Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNIDVIARSRVVTSSNS 343 Score = 94.3 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 43/414 (10%), Positives = 110/414 (26%), Gaps = 14/414 (3%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + K + H N T L+ +I+ + Sbjct: 210 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMIEGKAIKPISA 269 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 +++ I DK I + + R + + ++ + DV + Sbjct: 270 RDIGGKMEAILDMRDKHIPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNI 329 Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 I+ ++ + + + + + + Sbjct: 330 DVIARSRVVTSSNSKADMAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVQPVVKGN 389 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V + I + + P A +++ Q E + ++ Sbjct: 390 VYIDGLRIEVRNAPQVGERILVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 449 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + ++ +G + L +++ L N Sbjct: 450 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 509 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 K A + I + T+++ N + + L Sbjct: 510 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 569 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ ++ GVNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 570 ARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|260597451|ref|YP_003210022.1| flagellar hook-associated protein FlgK [Cronobacter turicensis z3032] gi|260216628|emb|CBA29928.1| Flagellar hook-associated protein 1 [Cronobacter turicensis z3032] Length = 540 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 57/398 (14%), Positives = 128/398 (32%), Gaps = 14/398 (3%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMF 63 + A +++ NI N + Y R+ T+ S V V + E Sbjct: 1 MSAAQTALSTVSNNISNYNVAGYTRQTTILGQSNSTMTQGGWVGNGVFVSGIQREYDAFI 60 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 L+A + + + M N+ + + SL++ + N + Sbjct: 61 TNQLNAAQNQSSGLTTRYEQMSKIDDM--VSGTTNNISTTMQDFFKSLQTLASNAEDPAA 118 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT-- 181 +T++ A+ +V F + ++ + + + + F +++ +N+ I T Sbjct: 119 RQTLLGKADGLVNQFKVVDQYLRDQDKQVNTAVTASVQQINNFATQIASLNEQITRLTGM 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + +D LDQRD L+ ++++I+G+ V++ N V ++G L + + Sbjct: 179 GAGASPNDLLDQRDQLVSELNKIVGVDVSVQDGNTFNVTMANGYNLVQGSRASQIAAVPS 238 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + V G + L R + +N L ++A +F Sbjct: 239 SADPARTTIAFVDKTAGNIEIPEKLVTSGSLGGLFAFRSEDLDQARNNLGQIALAFGDAF 298 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 +++ ++ G + S+ + Sbjct: 299 NKQHEAGFDANGDAGKAFFTLGSPAAMSNARNTGSASLTATITDSSAVKASNYQMAYDGT 358 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 W V L+ + + N G+ +T Sbjct: 359 NWKVTRLSDNVTVNATPTTDGSGNVTALEFDGLKIGIT 396 >gi|289208114|ref|YP_003460180.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] gi|288943745|gb|ADC71444.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] Length = 408 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 41/475 (8%), Positives = 100/475 (21%), Gaps = 73/475 (15%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQRSENKNMF 63 FN + N+A + N+ NA + R T + Sbjct: 3 FNIGLSGLNSAQADLQTTGNNVSNAGTTGFKRSRAEFGDVFAQSFGGVSQTATGGGSRLM 62 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 E + N + + + + N Sbjct: 63 AVTQQFSQGRTEFTENGLDLAIDGEGFFVMNDGGNRVYTRAGEFQVNRDGNLVNNQG--- 119 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + L +N + Sbjct: 120 -----------------------------------------QQLQGYPPINPGSTDTDFN 138 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D Q + + I ++++ ++ ++ + +S Sbjct: 139 TGQLGDLRLQTGASAPQATSDIEALVNLQSDAPILDPGEFEFDDPDSYNYSTSLTVYDSL 198 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + ++ F+ +V I E Sbjct: 199 GTSRDARIYFVKSDEREWTAFMSVDGEPIN------------------------EEEGFE 234 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 A + F + + Q+ + + G Sbjct: 235 LSFDASGQLDGNTEFPFSTDDFTNGAEGLDGTIDFAGTTQFGGDFAVNDLGQDGFASGRL 294 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 ++ + + + + +A L + N W E + Sbjct: 295 TGVDIDSSGVVFARFTNGQSSVLGQVALANFTNPQGLEQLGNN--NWAETFAAGDPVFAS 352 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V++ +EL LI ++++ + + I D++ QT++ Sbjct: 353 PGTGNLGEIQAGALEASNVDIAQELVNLITAQRNFQANAQTISTADQVTQTIINI 407 >gi|90579909|ref|ZP_01235717.1| flagellar hook protein [Vibrio angustum S14] gi|90438794|gb|EAS63977.1| flagellar hook protein [Vibrio angustum S14] Length = 467 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 50/488 (10%), Positives = 128/488 (26%), Gaps = 38/488 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 N A + A + + NI NA+ + T + V Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + ++ + + F A+ + ++ NN+ + E Sbjct: 62 STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L ++ V ++ + ++ + K +++S L E Sbjct: 116 NELVNSEGKFLLGYPVNKDSNTVASYEAKSMKIDDVFGQPTKSGTIKVS-LNLPNKETAP 174 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVL--LQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +++ FK + D L K++ T+ Sbjct: 175 KSNSFDFKDPDSFNKSTSSTIYDSLGKPYKMTTYYVAKYDPNAVPTNANTWEVHQTVTNN 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + + + + + D P + Sbjct: 235 SGEERLLKPDPTKIPPAYQ--VIDNTDPTAPVVTGYRMRFDQNGQPYPGDPGDPTATPAI 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + E AG + + D E Sbjct: 293 PPTPASPLNIQMETFASAGIDVGGADPTQSLTMNYDDPTQYASAFEVRKFQDV------- 345 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + ++ +++ Y + + +A ++ L + W Sbjct: 346 -----DGATTGYLSKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTL--W 398 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S SQ F + +++ +EL LI ++++ S++ + ++ Sbjct: 399 NTTQESGQAIWGDASQGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQ 458 Query: 471 MLQTLLEG 478 + Q +L+ Sbjct: 459 LQQNILQI 466 >gi|109899402|ref|YP_662657.1| flagellar hook protein FlgE [Pseudoalteromonas atlantica T6c] gi|109701683|gb|ABG41603.1| flagellar basal body FlaE [Pseudoalteromonas atlantica T6c] Length = 458 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 53/483 (10%), Positives = 128/483 (26%), Gaps = 37/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI N + + + V Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F A + + + + E++ Sbjct: 62 QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFS----FTRAGMFKLDAENFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + D L ++ ++ + V+ + + E+S + V+ Sbjct: 118 VNSNGDNLLGFPVNPDGTSSSVALSTTQAVRIPDSSGSPQPTSEVSLKMNLPAGDDAVD- 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D + D L + + + + +++ M Y Sbjct: 177 ------------LDLFNPDDPLTYNAATSVTVFDSLGDSHVMTYYFMKDQAATNEWVVTT 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + T I G V + G D + Sbjct: 225 YMDDIALNTEGDTPGVPPITGPNVVGETTGSPVAGYRMTFSAGGDFTSIANADGTSSATG 284 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + +A S+ + + Q+ S Sbjct: 285 DITSVALGGTILANGSDPSQTITTNFAFDPGNATP--------DEPTQFASAFEVTSLEQ 336 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + Y + ++ I + + L + +++ W E Sbjct: 337 DGLAVGRLTGIDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQ--QSNTQWQESIL 394 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I+ S VNL EL LI ++++ +++ + +++ QT+ Sbjct: 395 SGEALAGEATTGTFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTI 454 Query: 476 LEG 478 L Sbjct: 455 LNI 457 >gi|118477189|ref|YP_894340.1| flagellar hook protein FlgE [Bacillus thuringiensis str. Al Hakam] gi|225863612|ref|YP_002748990.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|229183945|ref|ZP_04311161.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] gi|118416414|gb|ABK84833.1| flagellar hook protein [Bacillus thuringiensis str. Al Hakam] gi|225790448|gb|ACO30665.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|228599597|gb|EEK57201.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] Length = 437 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 53/478 (11%), Positives = 122/478 (25%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + S + ++ + + Sbjct: 107 NGGNVEYTRKGSFGVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT + + K Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKVVEKPKAGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + + +G K I L Q GS Sbjct: 227 YTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVTGEITKGGSIK 286 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Y + + + + Sbjct: 287 IPFGSGLTLD-------------------------LSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|163802597|ref|ZP_02196489.1| flagellar hook-associated protein K [Vibrio sp. AND4] gi|159173680|gb|EDP58499.1| flagellar hook-associated protein K [Vibrio sp. AND4] Length = 637 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 55/400 (13%), Positives = 125/400 (31%), Gaps = 18/400 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQLGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ +L + +++ D++++ Sbjct: 63 NVRRSWDEFAVKELNLSTTNYA-SKLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ N V++ +K +++ I + + E+ V Sbjct: 122 MADTPNDMGARKVVLEKAKLFSDTLNEFHETVRQQSDVTNKSLDMGIERMNQLAVEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N++ V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S V + G + + GKI ALL++RD +P ++L Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + G + + + + Sbjct: 297 VATAFSSEVNHLQSQGLDHYGHIGEPLFTDVNSESLAKSRVVVGPQSTADMAVYVNDISA 356 Query: 353 DGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 G + + N+ + D + Sbjct: 357 LKGGEYSLRYDGDSYNVTKPNGETVKLNTGADNAIYIDGM 396 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 37/353 (10%), Positives = 95/353 (26%), Gaps = 16/353 (4%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + ++ + + S + S+ I + ++ R V+ + Sbjct: 284 DEHIPQVMDELGRVATAFSSEVNHLQSQGLDHYGHIGEPLFTDVNSESLAKSRVVVGPQS 343 Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + + + + + Y D + + + + + + + Sbjct: 344 TADMAVYVNDISALKGGEYSLRYDGDSYNVTKPNGETVKLNTGADNAIYIDGMRVEVRNE 403 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS------ 311 P A +++ Q E + +E + + Sbjct: 404 PKVGEHVLLRPTRSSAAQIKVETQDPKAIAAQSYEASTTFAQGNAEFEILGAGDLREFEV 463 Query: 312 ------ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + + + S +S L N Sbjct: 464 VVSPMGDQFAVTDTEGNVLMAPQPYPPNGPVAVSLPSNHPSYRDGSATVFELSPGALAND 523 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 K A + I T++ N + S + L + Sbjct: 524 KFTANLVPSEGDNGNLRKMQEIQTEKKMNGNESTIMSLYFNLNTNVGLKTSTASRLADVA 583 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Q+ E ++ GVNL EE + ++K +Q+Y S++++ + T+L+ Sbjct: 584 QLESEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636 >gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE [Herminiimonas arsenicoxydans] gi|133739000|emb|CAL62048.1| Flagellar hook protein FlgE [Herminiimonas arsenicoxydans] Length = 418 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 56/484 (11%), Positives = 109/484 (22%), Gaps = 79/484 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVT----VVTQ 55 F + + N AS+ +I N+ N+ + + S Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGTQI 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + A ++ + F + + S E + Sbjct: 62 ARVAQLFSQGNITASNNPLDMAINGDGFFRM-------SSGGTISYARNGQFELSKEGFI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ S L + D V +N Sbjct: 115 QSASGARLTGYMADANGVVAIG-----------------------------APAELKINK 145 Query: 176 AIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ LD R +L + T ++ + VY S G + Sbjct: 146 ADLAPEATTKYELKLTLDSRKNVLNSANFNPDDPTTFNDSTSVPVYDSLGNSHILRTFYV 205 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T++ PI D V + +P Sbjct: 206 KTAGGEWDVFATNDGVPIGYDPAAVPPANAPVALGTMQFGPGGVLIPSIPPT-------- 257 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + I Q+ + + Sbjct: 258 ----------------------PLVVPMDVSTGATTPFNIVIDHTGTQQFAQSFGVNKQL 295 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 N+A ++ Y + ++ L N W+E Sbjct: 296 PDGFPPGTLTAFNVASDGSIVGRYSNGKVNVLGQVILSSFANPNGLQNIGDNQ--WVETA 353 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + V+L EL +I ++ Y + + I D++LQT Sbjct: 354 ESGVALTSAPGSSGLGSVQSARIEESNVDLTAELVNMITAQRYYQANAQTIKTQDQILQT 413 Query: 475 LLEG 478 L+ Sbjct: 414 LVNL 417 >gi|228984838|ref|ZP_04145009.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155324|ref|ZP_04283435.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228628249|gb|EEK84965.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228774890|gb|EEM23285.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 437 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 122/478 (25%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + S + ++ + + Sbjct: 107 NGGNVEYTRKGSFGVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT + + K Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKVVEKPKAGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + + +G K I L Q GS Sbjct: 227 YTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVTGEITKGGSIK 286 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Y + + + + Sbjct: 287 IPFGSGLTLD-------------------------LSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K +A + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAIATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|328948413|ref|YP_004365750.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] gi|328448737|gb|AEB14453.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] Length = 463 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 55/498 (11%), Positives = 121/498 (24%), Gaps = 55/498 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ + N + I NI N + + + Sbjct: 1 MMRSLYAGVSGLQNHQTRMDVIGNNISNVNTYGFKKGRATFQDMISQQINGAARPTEEVG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V ++ + + L + F LK + + Sbjct: 61 GVNPKEVGLGMSVATIDTIFTQGNLQTTGNTTDLAIQGNGFFVLKN-------GDETFYS 113 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 N + + + + Q TSA + K+ N Sbjct: 114 RAGVFGTDSNGTLVNPANGLRVQGWMAEDVNGRQVVRTSATPTDLVIPVGQKDPPKATEN 173 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + + D V+ I I N + + + + Sbjct: 174 V-----------RYFCNLNKNTPEIPDNPTADQVIEGTWQTEIDIYDTYGNAHQVQMNFA 222 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 +N + N+ + DGV + SV Sbjct: 223 KVPGNPNQWTVTVNVDPDNADFTQTRIGFGTTDGVQNTYTLNFDNTGK--------LQSV 274 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V NQ + +++ + ++ P + + I Sbjct: 275 VDSAGNQSNPQGEIVLQASYAVADSNADANGNPYRQTFNLNLGTIGSMENTI-------T 327 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q S + + K + + + Y + + +A L + Sbjct: 328 QAASKSTTKANYQDGYKLGYLDNFKIDQSGIITGVYSNGSVRTIGQVAMASFTNQGGLEK 387 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + E S ++ + V+L E+L+ +I ++ + + Sbjct: 388 KGDN--TYAESINSGMANIGESGTQGKGSMLSGTLEMSNVDLTEQLTDMIVTQRGFESNA 445 Query: 463 KLIMFTDKMLQTLLEGVK 480 K I D ML+T+L + Sbjct: 446 KTIQTGDSMLETVLGLKR 463 >gi|209695756|ref|YP_002263686.1| flagellar hook-associated protein FlgK [Aliivibrio salmonicida LFI1238] gi|208009709|emb|CAQ80013.1| flagellar hook-associated protein type 3 FlgM [Aliivibrio salmonicida LFI1238] Length = 626 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/338 (15%), Positives = 124/338 (36%), Gaps = 16/338 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L + N A +Q + NI N + + + R+ + + V Sbjct: 1 MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQETNMPHWVSGANLGAGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R L+ ++ + ++ + M + I+ D+ Sbjct: 60 HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 +++ S + +E K V++ + + Q+ N V++ AD +K+++L + + EL Sbjct: 119 VKTLSDSPNEIGARKVVLEKSRLISQSLNDFYENVRQQNADVNKKMDLTVERMNGIALEL 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + +D +D+ + L++++S+ ++ R+N + G + + Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + ++G V + Q ++ GK+ +L ++RD +P ++L Sbjct: 236 GTESSQLKMIQGTPDPLQRRLAMVEGNGVKAIQHDSI-GGKLSSLFELRDKTIPTIMDEL 294 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +A + A + G I + Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQVGANIFSDVNSEQA 332 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 38/359 (10%), Positives = 105/359 (29%), Gaps = 13/359 (3%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 ++ F + + I + + S + R S+ + + S ++ Sbjct: 271 SIGGKLSSLFELRDKTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQVGANIFSDVNSE 330 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 + R ++ S IG+ ++ ++ D ++ + + Sbjct: 331 QAVRSRAIIPGDSSAEIGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386 Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299 NP + + G+ +++ + Q + Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERILLRPTRLAAGDMKLEMNEAEKIAAQSYASSATFAT 446 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + + I+ +G + + +S Sbjct: 447 GNAKFKVLQSGDLKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELSG 506 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N K A + + T+++ +N + ++ + Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYQNVNTEVGLKKATAT 566 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L ++V ++ GVNL EE + ++K +Q+Y S++++ D+ T+L+ Sbjct: 567 RLTEVARVETEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNTILQL 625 >gi|163750564|ref|ZP_02157802.1| hypothetical flagellar hook-associated protein [Shewanella benthica KT99] gi|161329719|gb|EDQ00708.1| hypothetical flagellar hook-associated protein [Shewanella benthica KT99] Length = 637 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/409 (12%), Positives = 121/409 (29%), Gaps = 24/409 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + N A+ + Q A NI N + + Y R+ + Sbjct: 1 MSM-DLLNIARTGVLASQAQLAVTSNNIANVNTQGYHRQVAEQSSLESQRLGDHFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L + + + Q+ + + + + S ++ L S Sbjct: 60 YISDVKRIYNEYAARELRIGQTGASEAQTTQTKMSELDQLFSQ--IGKSIPQGLNDLFAS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S + + + V+ +A ++ N N + + +I + EL Sbjct: 118 LNSLADLPDDMGIRGMVLGSAGQLADNLNQMQSHLDGQMKQTNDQIAGITDRINEISKEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD+++ L+Q++S+ ++ I + + L Sbjct: 178 GQLNQELMKSQGEDAQ---LLDRQNALIQELSQYAQVNVIPLDTGAKSIMLGGAVMLVSA 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + I + + G++ AL RD + + +L Sbjct: 235 EVSMSLGTMVGDPHPGELRVVAKIGSQSQAIDPAKM--GGQLGALFAFRDETLIPAELEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++ + +F++ + + G I I D + + + Sbjct: 293 GQLSLGVADAFNQANSQGFDLNGEMGQNIFKDINDAAMSVGRVGGFSSNAGTA------N 346 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 LR N L D+ + + G + T Sbjct: 347 LRVNIDDVGLLSGNSFELKYTAPATYELKDTVTGSVTPLTLTGTQLDGT 395 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/409 (10%), Positives = 108/409 (26%), Gaps = 17/409 (4%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +M + S + + ++ F + Sbjct: 229 VMLVSAEVSMSLGTMVGDPHPGELRVVAKIGSQSQAIDPAKMGGQLGALFAFRDETLIPA 288 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + S+ +N + + R + + Sbjct: 289 ELELGQLSLGVADAFNQANSQGFDLNGEMGQNIFKDINDAAMSVGRVGGFSSNAGTANLR 348 Query: 209 TIVRN-------NNDMVVYTSDGTTLFETVPRDIN--FEKMNSYTVTSESNPIFIDGVVV 259 + + + ++ L +TV + T+ + G Sbjct: 349 VNIDDVGLLSGNSFELKYTAPATYELKDTVTGSVTPLTLTGTQLDGTNGFSIHIDSGAFA 408 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 ++ P A + + + ++ S + + + P Sbjct: 409 DGDKFEIRPSSGAAAGISVVMADGRGIAAAAPKITADTANSGNISVEMVSVNRGDPAFPP 468 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN--- 376 + + E N P+ + F ++V AG D Sbjct: 469 TGSELTFEINTTTSMFEVFDANGTSLGAPAAYAPPSISAHGFSFDVATTAGATDRFTFDL 528 Query: 377 -----HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 ++ + + + TL + + + + + +Q V+ Sbjct: 529 SFAPGDNSNAVTMANLSEAKLMNSGGSTLSDVYQGTKISVGGKAKAADIAAGTAQSVYLQ 588 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GVNL EE + L++ +Q+Y S +++ +++ +TLL V+ Sbjct: 589 AYNRVQSESGVNLDEEAANLMRFQQAYQASARIMTTANEIFETLLNAVR 637 >gi|254225807|ref|ZP_04919412.1| flagellar hook-associated protein FlgK [Vibrio cholerae V51] gi|125621713|gb|EAZ50042.1| flagellar hook-associated protein FlgK [Vibrio cholerae V51] Length = 624 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDFAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LAVSFSHEVNTMQAQGLDLRGKVGSALFTDVN 328 Score = 93.6 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 34/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + ++ + + + + R V Sbjct: 287 IPYLMDEVGRLAVSFSHEVNTMQAQGLDLRGKVGSALFTDVNLDVLARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAADIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|268589172|gb|ACZ06862.1| flagella hook-associated protein [Xanthomonas axonopodis pv. glycines] Length = 624 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGVLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 37/446 (8%), Positives = 115/446 (25%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGVLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S + + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + + N + + ++ + + + Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + + + + + A + Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478 Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 P + + G + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + + +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|316932791|ref|YP_004107773.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris DX-1] gi|315600505|gb|ADU43040.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris DX-1] Length = 623 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 61/453 (13%), Positives = 138/453 (30%), Gaps = 25/453 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55 MSL + A + + N+ NA+ YVR+ + V V Sbjct: 1 MSLGDALSIAMAGLRVNQASMSLVSSNVANAETPGYVRKTVNQGVTVSGQTGTGVQVNGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L S L F + + D + + + L ++++ + Sbjct: 61 NRQLDDYVLAQLRTEISGASYASLRSDFLGQLQGLFGDPNSTGTLESSFNGLTTAMQALA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A+ + N + +Q +R+ + + + L ++ +N Sbjct: 121 TSPDSTSARIGVLNAAQALAAGLNAMSNGIQTLRSGCEAGLTDAVGTANNLLKQIATINT 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ LDQRD + ++S+++ I + N + V+T G L Sbjct: 181 QIRTNPQGGTSTDAATAALLDQRDQAINQLSQLMDIRIVTNGANQVSVFTGSGVQLAGME 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----------VVVSSNQGSAVPKGKIKALLQIRDS 281 ++FE + + + + + + S++ GK+ A +++RD+ Sbjct: 241 AATLSFEAQGTVNPGTTWSSNSMLSELGSVTVSYASGSTIDITSSLKSGKMAAYIELRDN 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA------DGIKDLDNKLCQGIS 335 + Q QLD+ A L S S+K + A ++ + Sbjct: 301 TLVTAQTQLDQFAATLSSSLSDKTTAGTPVTSGASAGFALDLSGMKSGNTINIAYTDVAT 360 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 R + L + + + + N + Sbjct: 361 GLQHTVTVVRVDDPRLLPLPQTATNDPNDYVVGIDFSGVSGSVESQLNAALYGRNLQFTG 420 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 T+ + + + + V Sbjct: 421 TSPNINVLDNAGFSTVNSASVTTTVTGLAGGSV 453 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 54/438 (12%), Positives = 130/438 (29%), Gaps = 10/438 (2%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T + + Q ++ +S + Sbjct: 187 QGGTSTDAATAALLDQRDQAINQLSQLMDIRIVTNGANQVSVFTGSGVQLAGMEAATLSF 246 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + N +++ V ++ + + + K ++ Sbjct: 247 EAQGTVNPGTTWSSNSMLSELGSVTVSYASGSTIDITSSLKSGKMAAYIELRDNTLVTAQ 306 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 T ++ ++S D + +S + N + YT T L T Sbjct: 307 TQLDQFAATLSSSLSDKTTAGTPVTSGASA-GFALDLSGMKSGNTINIAYTDVATGLQHT 365 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD---SVVPIFQ 287 V + + +N V + + S + ++ A L R+ + Sbjct: 366 VTVVRVDDPRLLPLPQTATNDPNDYVVGIDFSGVSGSVESQLNAALYGRNLQFTGTSPNI 425 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 N LD + S S + G + + + + + + Q S Sbjct: 426 NVLDNAGFSTVNSASVTTTVTGLAGGSVEVPLFNDNGSPYSGSINVAGNQMTGYAQRISV 485 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLL 401 + L S + + AG + + + A + +L Sbjct: 486 NADLVKDNSKLVVYSTSPATAAGDTARPDFMIKQMMNSKYYYSAATGIGSDTAPFKGSLQ 545 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 Y + + N + + L VV N + + +S + GVN+ EE++ L+ ++ +Y + Sbjct: 546 SYLQQFVSQQGSNAAAAKQLSEGQNVVLNTLQQKFSASSGVNMDEEMAHLLSLQNAYAAN 605 Query: 462 NKLIMFTDKMLQTLLEGV 479 +++ ++M Q+L++ + Sbjct: 606 ARVMSTINQMYQSLMQAI 623 >gi|223040539|ref|ZP_03610811.1| flagellar hook-associated protein FlgK [Campylobacter rectus RM3267] gi|222878174|gb|EEF13283.1| flagellar hook-associated protein FlgK [Campylobacter rectus RM3267] Length = 617 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 57/441 (12%), Positives = 132/441 (29%), Gaps = 27/441 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + A Q + NI NADN++Y R+ + + V Sbjct: 4 IFSSLHIGMTGLDAAQTQITTTGHNITNADNEHYTRQRVVQSAREAFHDIPGDIGTGTQV 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L + + + D + + ++ Sbjct: 64 DTVVRVHDEFTFARLRTSNINLESTEYKKKILEEISQRF-PDLKSVGIGRDLQNYFNAWN 122 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N +E +++ A + ++ N + + KI+ D D +IE+ ++ + ++ ++ Sbjct: 123 NLASNPTEGSQKINLLNTASTLAKSINKAHDMLTKIQKDVDSQIEVTVNEINKYAKQIAQ 182 Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + + A+D D+RD L +S+++G+S V + + Sbjct: 183 INKEIVRVESVGNTRANDLRDKRDQLELAMSKLVGMSVFKGELQGSNVDPTVTDMGTKHQ 242 Query: 232 PRDINFEKMNSYTV-----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 F ++ T + F + + GK+ A L +R Sbjct: 243 INISGFNIVDGVTYHPLKIDKMNGNSDFKGVYFERDDGKKVDLNGRISGGKLGAALDLRG 302 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISE 336 + D + I + + N N A D + + Sbjct: 303 RKMDDSGEFQDGTIQKYIDNLNTFAKGIINETNNIYAKSAVENAVTDEIKGLSDSRTLMN 362 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + G + N+ D + N D N+ Sbjct: 363 FNNDIKHGSFDVVVYNNQGQEVARKTININASTSINDNTRGNSIVRDFNSDTDDNGDNNS 422 Query: 397 NVTLLEYARNSIGWLEKNRSD 417 + +Y + + + Sbjct: 423 LNDVDDYFQANYQYDAATGRG 443 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 121/449 (26%), Gaps = 11/449 (2%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 Y ++ V V N L + ++ + + Sbjct: 176 YAKQIAQINKEIVRVESVGNTRAND------LRDKRDQLELAMSKLVGMSVFKGELQGSN 229 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + T +K + ++ + + ID + D + Sbjct: 230 VDPTVTDMGTKHQINISGF-NIVDGVTYHPLKIDKMNGNSDFKGVYFERDDGKKVDLNGR 288 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 I L + + + + ++ + + I S + Sbjct: 289 ISGGKLGAALDLRGRKMDDSGEFQDGTIQKYIDNLNTFAKGIINETNNIYAKSAVENAVT 348 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 D + SD TL + + +S + +G Sbjct: 349 DEIKGLSDSRTLMNFNNDIKHGSFDVVVYNNQGQEVARKTININASTSINDNTRGNSIVR 408 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 D+ N L+++ ++ + V A Sbjct: 409 DFNSDTDDNGDNNSLNDVDDYFQANYQYDAATGRGTFGVIPKKNAGEYSVAFVDKGTNFP 468 Query: 336 ETICVNPQYRS----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 I +N + + S + K G ++ N K IF Sbjct: 469 GIIGLNRVFEGGEAKDMSVKSELMENPHKLKAYSNPTPGNNEVANDMVQMQYKKIIFYSD 528 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + ++ Y R L ++DL+ + + + + GVNL EEL+ L Sbjct: 529 KHADKEESVEGYYRYITTDLASETQSNNDLNDANAAIHKVAMSEHQSVSGVNLNEELTNL 588 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ + SY + K+I +KML TLL + Sbjct: 589 IRFQSSYGAAAKIITTVEKMLDTLLMLKQ 617 >gi|212639558|ref|YP_002316078.1| flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] gi|212561038|gb|ACJ34093.1| Flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] Length = 460 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 53/495 (10%), Positives = 131/495 (26%), Gaps = 52/495 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L N + I NI N + Y + + Sbjct: 1 MLRSMFTGIGGIRNFQYKLDVIGNNISNVNTYGYKKARVTFKD----------------L 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + A +S+ G + + + + S + Sbjct: 45 VSQQISAATSSTGTR-------------GGINGKQIGLGSGLGSIETIHTQGSTQTTSRP 91 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + VV + N + + +L + + + V N + Sbjct: 92 LDLALGGDGFFVVGSINDV-----TLISMDGPAGKLGTNKVNTGVPIDRVFNLSFTRAGN 146 Query: 183 SKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 D + ++ D L + I + T++ N + D T + + + + Sbjct: 147 FYLDEYGYIVNSDGQYLIGEAAIKDVDTVITNAPHVAQARRDLETFLNSTLVNFIKKWKD 206 Query: 242 SYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +T ++NP + + N KI D+ + ++ Sbjct: 207 EFTKDPDNNPTTQTDFVNFIRNFNNELKNLNEKITGKTDPNDTTLATAGTYFNDRVSPKA 266 Query: 299 GSFS-----EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 E + ++ + ++ + + + N + Sbjct: 267 SINPVPLLPENEADWPDTLAEAEKMMGPYLEGISGFVESVQQVLQDYSEPKYGNVTSFEP 326 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + + + K +A L + N+ Sbjct: 327 -GLIQIPKTAKSFGITADGKVTFIDSNGQLKIAGQILLAQFPNPTGLEKMGGNTFKETNN 385 Query: 414 NRS--------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + ++L I V+L EE + +I ++ + + ++I Sbjct: 386 SGKLDRNANGLTINELSRPGLNGAGEIISGALEMSNVDLSEEFTEMIVAQRGFQANTRII 445 Query: 466 MFTDKMLQTLLEGVK 480 +D++LQ L+ K Sbjct: 446 TTSDEILQELVNLKK 460 >gi|228958033|ref|ZP_04119769.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801658|gb|EEM48539.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 437 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +G++ + Y + + + + Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSDLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|219670134|ref|YP_002460569.1| hypothetical protein Dhaf_4124 [Desulfitobacterium hafniense DCB-2] gi|219540394|gb|ACL22133.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 426 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 110/478 (23%), Gaps = 53/478 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + N + + NI N + + R + Sbjct: 1 MLRSLYSAISGLKNHQIKMDVVGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQ- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L ++ ++M+ N + + Sbjct: 60 -------GGTNPAQVGLGSMVSSIDQIMTTGSSQNTGKSTDAMINGRGFFVFRNAGQIVY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + V A+ L + ++F Sbjct: 113 GRAGAFSQDQNGYLTDPGTGAFVLGQMWGANDR---------EILEWGSAPLTPLRFNIG 163 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + L + + DG TL ++ I F K + Sbjct: 164 SYPPEPEGGIIKINLGDFVQNGSNYEYVNPALIGASATVPDGGTL-DSTTGKITFTKDPA 222 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + I I + A + ++ + + Sbjct: 223 DEASGDPPAIEITDIDYDKLTIPAGDFVQKGSVYVYENPDLVGA---------------- 266 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + V+ Sbjct: 267 -----------DLEDITDGSFDPKTGTITLNAAPPSAGVEIEGVDGRLRAKLDEVTIDGN 315 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + S ++ +A + L N N S D+ Sbjct: 316 GIISGIYSNGKG------SASRRIGQLAIANFANDAGLQNVGNNFYA--ATNNSGIADIG 367 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I + V+L +E + +I ++ + ++++I +D +LQ L++ + Sbjct: 368 AAGTAGRGNIIPNSVEMSNVDLSQEFTDMIVTQRGFQANSRVITVSDSLLQELIDLKR 425 >gi|259417834|ref|ZP_05741753.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] gi|259346740|gb|EEW58554.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] Length = 422 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 62/488 (12%), Positives = 128/488 (26%), Gaps = 74/488 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M++ + N S + A+I NI NA Y R T + Sbjct: 1 MTISSSLNAGVAGLAANSTRLAAISDNIANASTAGYKRVVTSFESMVISQNGGSYAAGGV 60 Query: 56 RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLRDSLE 112 N M D+ L + S+A + F + + D + R + E Sbjct: 61 SVNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVDSGGDPTMLLTTSGSFRTNDE 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y S +L + + + ++ +R D S L + Sbjct: 121 GYLTTTSGLVLLGWPANADGTIPTVARDTDGPLEPVRFD--------TSQLSAAPTTAVS 172 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + +A A D + + G + V Sbjct: 173 LGVNLPAGSAVAGAAGDPEENAIQYYDNL---------------------GGQQELDIVY 211 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + G + SA KG + + + Sbjct: 212 TPTGANDNEWTMTLTDGATGTVVGEYTLTFDDSATGKGTLDTVATTTGGAYDPASGTI-- 269 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + I I V Q S S Sbjct: 270 ---------------------------------IVTTDSGPIEIEIGVMTQLSSAFSAAT 296 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + + + Y + ++ P+A + + +S ++ Sbjct: 297 IEKDGYEAASFAGVEVDEGGFVHALYENGSSRIVYQIPLADMPNANGMKSL--DSQTFMP 354 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S ++ L ++ G ++ EL+ +I+ +++Y+ + K+I D+ML Sbjct: 355 SPDSGAYYLWDAGAGPTGEVASYRQEESGTDVATELTSMIQTQRAYSSNAKVIQTVDEML 414 Query: 473 QTLLEGVK 480 Q + Sbjct: 415 QETTNIKR 422 >gi|59712475|ref|YP_205251.1| flagellar hook-associated protein FlgK [Vibrio fischeri ES114] gi|59480576|gb|AAW86363.1| flagellar hook-associated protein 1, FlgK [Vibrio fischeri ES114] Length = 626 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 53/349 (15%), Positives = 128/349 (36%), Gaps = 16/349 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L + N A +Q + NI N + + + R+ + + V Sbjct: 1 MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQDTNMPHWVSGANLGAGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R L+ ++ + ++ + M + I+ D+ Sbjct: 60 HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 +++ + + +E K V++ + V Q+ N V++ AD +K+++L + + EL Sbjct: 119 VKTLADSPNEIGARKVVLEKSRLVSQSLNDFYENVRQQNADVNKKMDLTVERMNAIALEL 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + +D +D+ + L++++S+ ++ R+N + G + + Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + ++G + + Q ++ GK+ AL ++RDS +P ++L Sbjct: 236 GTNASELKMIAGSPDPLQRRLAMVEGKGMKAIQHDSI-GGKLSALFELRDSTIPTIMDEL 294 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +A + A + G I + + I + Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSEQAARSRAIVQGGS 343 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 103/359 (28%), Gaps = 13/359 (3%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 ++ F + I + + S + R S+ + I S ++ Sbjct: 271 SIGGKLSALFELRDSTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSE 330 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 R ++ S +G+ ++ ++ D ++ + + Sbjct: 331 QAARSRAIVQGGSSAEVGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386 Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299 NP + + G+ +++ + Q + Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERVLLRPTRIAAGEIKLEMNEAEKIAAQSYASSATFAT 446 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + + + I+ +G + + ++ Sbjct: 447 GNAKFKVLQSGALKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELTG 506 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N K A + + T+++ N + ++ + Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYENVNTEIGLKKATAS 566 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L S+V ++ GVNL EE + ++K +Q+Y S++++ D+ ++L+ Sbjct: 567 RLSEVSRVENEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNSILQL 625 >gi|30019797|ref|NP_831428.1| flagellar hook protein FlgE [Bacillus cereus ATCC 14579] gi|229043508|ref|ZP_04191218.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|229127079|ref|ZP_04256078.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|229149956|ref|ZP_04278184.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|296502353|ref|YP_003664053.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] gi|29895342|gb|AAP08629.1| Flagellar hook protein flgE [Bacillus cereus ATCC 14579] gi|228633637|gb|EEK90238.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|228656432|gb|EEL12271.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|228725886|gb|EEL77133.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|296323405|gb|ADH06333.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] Length = 437 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +G++ + Y + + + + Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|197336362|ref|YP_002156694.1| flagellar hook-associated protein FlgK [Vibrio fischeri MJ11] gi|197317852|gb|ACH67299.1| flagellar hook-associated protein FlgK [Vibrio fischeri MJ11] Length = 626 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 53/349 (15%), Positives = 128/349 (36%), Gaps = 16/349 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L + N A +Q + NI N + + + R+ + + V Sbjct: 1 MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQDTNMPHWVSGANFGAGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R L+ ++ + ++ + M + I+ D+ Sbjct: 60 HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 +++ + + +E K V++ + V Q+ N V++ AD +K+++L + + EL Sbjct: 119 VKTLADSPNEIGARKVVLEKSRLVSQSLNDFYENVRQQNADVNKKMDLTVERMNAIALEL 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + +D +D+ + L++++S+ ++ R+N + G + + Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + ++G + + Q ++ GK+ AL ++RDS +P ++L Sbjct: 236 GTNASELKMIAGTPDPLQRRLAMVEGKGMKAIQHDSI-GGKLSALFELRDSTIPTIMDEL 294 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +A + A + G I + + I + Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSEQAARSRAIVQGGS 343 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 103/359 (28%), Gaps = 13/359 (3%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 ++ F + I + + S + R S+ + I S ++ Sbjct: 271 SIGGKLSALFELRDSTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSE 330 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 R ++ S +G+ ++ ++ D ++ + + Sbjct: 331 QAARSRAIVQGGSSAEVGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386 Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299 NP + + G+ +++ + Q + Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERVLLRPTRIAAGEIKLEMNEAEKIAAQSYASSATFAT 446 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + + + I+ +G + + ++ Sbjct: 447 GNAKFKVLQSGALKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELTG 506 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N K A + + T+++ N + ++ + Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYENVNTEIGLKKATAS 566 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L S+V ++ GVNL EE + ++K +Q+Y S++++ D+ ++L+ Sbjct: 567 RLSEVSRVENEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNSILQL 625 >gi|229189850|ref|ZP_04316861.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] gi|228593658|gb|EEK51466.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] Length = 437 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSLTLTSDKMETAIEGKGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDESVQKNPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +G++ + Y + + + + Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|77359722|ref|YP_339297.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis TAC125] gi|76874633|emb|CAI85854.1| flagellar biosynthesis; hook protein [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 122/483 (25%), Gaps = 41/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55 FN A + A + NI N + + N V Sbjct: 2 SFNIALSGLAAAQKDLNVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ + + A + + A D + + +++ Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFT----YTRAGAFKLNKDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D + + + S +I + L ++ Sbjct: 118 VDANGSFLQGFPVDPSTGDTTSVSLSTSSALQIPDSSGSPRATSSVYSSFNLDSRSI--- 174 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + S + + + + ++ P Sbjct: 175 ----------APTIAFNPTESATYNSSTSTTVYDSLGEPHVLQLFFVKS------DPAVP 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E S T + +GV + + + Q S +P + ++ Sbjct: 219 GNENQWSVHSTLDGKSFGANGVEQTVAPYTPMT------TFQFDSSGLPQSTDGTPNVSN 272 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + A ++ + QY S Sbjct: 273 TFNPLSIAAGGGGNAGLSDLLTNGATFPAPVEINWRDETGTANKIPTQYASRFEVKALEQ 332 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + + + + L + GW Sbjct: 333 DGATVGRLAGIDIGADGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGS--TGWKASIA 390 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S +I+ S VNL EL LI ++++ +++ + + Q++ Sbjct: 391 SGEPIAGEPGSGTLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQSI 450 Query: 476 LEG 478 L+ Sbjct: 451 LQI 453 >gi|156973594|ref|YP_001444501.1| flagellar hook-associated protein FlgK [Vibrio harveyi ATCC BAA-1116] gi|156525188|gb|ABU70274.1| hypothetical protein VIBHAR_01297 [Vibrio harveyi ATCC BAA-1116] Length = 637 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 59/395 (14%), Positives = 130/395 (32%), Gaps = 26/395 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ +L + +++ D++++ Sbjct: 63 NVRRSWDEFAVKELNLSTTNYAN-KLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ + N V++ +K +++ I + + E+ V Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVTNKSLDMGIERVNQLAVEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N++ V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S V + G + + GKI ALL++RD +P ++L Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343 +A + + G + + + ++ I Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYINDISA 356 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + LR G N + + D N + Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAF 391 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + +A + + + L G + KF N+ G Sbjct: 476 DTKGNVLMAPQPYPPTGPVSVSLPSNHPAYNNGGATVFELSAGALANDKFTANLVPSEGD 535 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + T++ N + S + L +Q+ Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E ++ GVNL EE + ++K +Q+Y S++++ + T+L+ Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636 >gi|220922288|ref|YP_002497590.1| flagellar hook-associated protein FlgK [Methylobacterium nodulans ORS 2060] gi|219946895|gb|ACL57287.1| flagellar hook-associated protein FlgK [Methylobacterium nodulans ORS 2060] Length = 623 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 74/463 (15%), Positives = 142/463 (30%), Gaps = 25/463 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSENKN 61 L N A + +N+ N YV+R ++ V T Sbjct: 3 LNALNTATAGLQVTQAAIGIVSQNVANQSTPGYVKRTLTPVSQSGNAGVGTGTVTRVLDA 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 K L +S L+ S + + + + ++ SL+S + + S Sbjct: 63 AAQKQLRLETSGAAYTDLVASIHSQIDALYGTPGSEAALDGVVNAFAQSLQSLASDPSSA 122 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 TV+ +A + + A VQ++R + + ++++ + LSE+ +N I T Sbjct: 123 PNRSTVLSDAGRLANRISDVANGVQELRTGLESRLGADVASASKLLSEIAALNVKIVGST 182 Query: 182 ASKHD---AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN-- 236 S A + LDQRD + ++++ + + T + + V TS G TL + Sbjct: 183 GSGGGDSLAAELLDQRDQRITELAQSMDVQTNAVGDGSVTVLTSSGVTLVDHGSAATLAF 242 Query: 237 -----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + S G + A+ G I A L +RD + Sbjct: 243 DGRSQLGPSAVYSTDASMRGVGTITATTPSGARIDLVADKAIRSGSIAAALTLRDDTLVQ 302 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV----- 340 Q QLD++A L + S+++ + G + L ++ Sbjct: 303 AQRQLDDLAAGLSRAMSDRNVSGTAATGEGGSGFDIDLTGLQAGNTVTLALRTSGVARNV 362 Query: 341 --NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 P + P+ + L ++AG P S A Sbjct: 363 ILMPTMGNAPAAIDPNLMDDPTALVVPFDIAGGPSTFAGAIASALGTGFAVSAAPSGGAG 422 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + A ++ + + G Sbjct: 423 AVRILASGLTLTGATASITVPTSATDTRNGAEQLPLFVDSGSG 465 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 7/256 (2%) Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + T+ P I G + A G A+ + Sbjct: 366 PTMGNAPAAIDPNLMDDPTALVVPFDIAGGPSTFAGAIASALGTGFAVSAAPSGGAGAVR 425 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + A ++ N N + G E Sbjct: 426 ILASGLTLTGATASITVPTSATDTRNGAEQLPLFVDSGSGNSVYTGSFEGGSHLTGLAQR 485 Query: 348 PSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINT-----NVTL 400 + S + AG + D+ ++ F +GI + ++ Sbjct: 486 LTVNPALMADTSSLIGYAGTTGAGDAKRPSFLYDALTGRSRTFSAASGIGGISAPYSTSV 545 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 ++A++ I + + L ++ + + GVN+ EELS LI+++ +Y Sbjct: 546 QDFAQSIIDAQGAAAAQAQQLDEGQKIALSTAQSRFGTQSGVNIDEELSRLIQLQSAYAA 605 Query: 461 SNKLIMFTDKMLQTLL 476 + +++ M+ TL+ Sbjct: 606 NARVLTAAKDMIDTLM 621 >gi|197122873|ref|YP_002134824.1| hypothetical protein AnaeK_2470 [Anaeromyxobacter sp. K] gi|196172722|gb|ACG73695.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter sp. K] Length = 428 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 42/486 (8%), Positives = 101/486 (20%), Gaps = 64/486 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MSLL + +S + + + NI NA+ + + + Sbjct: 1 MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGL 60 Query: 60 -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114 + A+ L + + + Y Sbjct: 61 GSRLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 NL + D + + + Sbjct: 121 LVNLEGLRVQGFPADPSGALAGLPDDL--------------------------------- 147 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + N S T+++ + Sbjct: 148 ----LVGTASAQPRATTRLTLKANLQADAAVPTAAWDPANPGATSNFSTTMTVYDALGAG 203 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + T + + + + L D Q Sbjct: 204 HAVQVYFRKTGDGAWDWHALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFT 263 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + D G+ + + Q+ + + G Sbjct: 264 PAGQAAPQPLDFSFGDPTSA-------------------GGTGLAGVTQFSATSASTFIG 304 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + + + VAG L N + + Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + V+L E+ LI ++++ ++K I D++L Sbjct: 363 GSGQPVVGAAGSGGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422 Query: 475 LLEGVK 480 L+ + Sbjct: 423 LIAMKR 428 >gi|228952133|ref|ZP_04114228.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807665|gb|EEM54189.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 437 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSLTLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDESVQKNPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +G++ + Y + + + + Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|166712056|ref|ZP_02243263.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzicola BLS256] Length = 624 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 131/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSHEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I +++++ A D LDQRD L+ K+ G + ++++ + V+T+ G L Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y + + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPSKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + S + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPSKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S + + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + N + + ++ + + + Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334 ++ + + ++ + + P L ++ +D Sbjct: 419 SVAITDPSRIAAATPVKATATVANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 ++ + + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + ++ +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D + Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624 >gi|149188072|ref|ZP_01866367.1| flagellar hook-associated protein K [Vibrio shilonii AK1] gi|148838060|gb|EDL55002.1| flagellar hook-associated protein K [Vibrio shilonii AK1] Length = 622 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 126/339 (37%), Gaps = 17/339 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLNLGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNTPRQFGGQTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ + + + + M + ++ D++++ Sbjct: 63 NVRRSWDQFAVKELNMATTQVNYRNENLTNLDMMSGMLSSMSSKK-VPESLNDWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V+D A + Q+ N V++ R + +K++E+ + + + E+ + Sbjct: 122 LADTPNDIGARKVVLDKANLIRQSMNDFHDTVREQRDNVNKKLEVSVERVNQIGIEIRDI 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +D+ + L++++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRSP---GPHNDLMDKHESLIKELSEYTKVTVTPRRNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + ++G + S G+++++ + RD +P ++L Sbjct: 239 ASQL-KMIDGFPDTHQHRLAIVEGKGIKP-ITSDDIGGRLESMFETRDKEIPYVLDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 ++ +E + G + + L Sbjct: 297 LSIAFSEKVNELQGQGLDLNGQVGQNLFADVNTLAFAKA 335 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 43/412 (10%), Positives = 115/412 (27%), Gaps = 12/412 (2%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + + H N T L+ +++ Sbjct: 210 TKVTVTPRRNAEGFNVHIGNGHTLVSGTEASQLKMIDGFPDTHQHRLAIVEGKGIKPITS 269 Query: 139 NTSAREVQKIRADADKEIELEISN-----------LRRFLSELTVVNDAIKFKTASKHDA 187 + ++ + DKEI + + + +N + + + Sbjct: 270 DDIGGRLESMFETRDKEIPYVLDELGRLSIAFSEKVNELQGQGLDLNGQVGQNLFADVNT 329 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 F R V S + + + + D + + ++ Sbjct: 330 LAFAKARVVAPVNSSADVAVFIDDTSQLKGGEYSLKFDGANYHVTNSDGVTQSFSGPSMQ 389 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + I + P A +++ + Q E + ++ Sbjct: 390 LDGIRVEIGNPPAVGEKLLLRPTRDGAANMKMTTNDPKAIAAQSFEASTTFAQGDAKFKV 449 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + S + ++ + G + L +S + N K Sbjct: 450 SSVGSLKEFEVVVSPTGTEFAVTDKSGNVLLSPTPYPPTGPVTVLGTTFELSDGAMANDK 509 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 A + I + + + T+++ N + S + L ++ Sbjct: 510 FTANLNPAEGDNGNLRKMLHIQTDKSMNDGDSTVIDIYHNLNTDVGLKASTATRLQEVAE 569 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + ++ GVNL EE + ++K +Q+Y S++++ ++ T+L+ Sbjct: 570 LEHENAQSRVASISGVNLDEEAANMMKFQQAYMASSRVMQAANETFDTILQL 621 >gi|296282273|ref|ZP_06860271.1| flagellar hook-associated protein FlgK [Citromicrobium bathyomarinum JL354] Length = 446 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 65/490 (13%), Positives = 138/490 (28%), Gaps = 59/490 (12%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------- 50 + + + A NI NA + YVRR Sbjct: 3 SDLLSIGASGARAARAALEVTANNIANASSDGYVRRSVRIEEVSGGSIAGRGGDVSVSGS 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + R L ++ + + + E + I + + Sbjct: 63 RIAQVRRNADAFRQAELRRTNADLQRANVELGGLQNIEAAV----EQSGLFDSIVEFEAA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L+ + + ++ V+ AE + FN +A + + ++ NL + +EL Sbjct: 119 LQQLAGDPTDSARRAAVLGQAETLASKFNITASSLASAGEGLRFDANADVDNLNTYAAEL 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + VN + A +D LDQRD LL+++S +++ + V + G + Sbjct: 179 SRVNLRLARAGAGSNDQAALLDQRDSLLERMSGFANVNSSFAPD--GTVTVALGASPGTA 236 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S T + IDG + G + + +L Sbjct: 237 FVSGGTAATLTSSTNADGTLAFAIDGAPFNPG------SGSLTGASLALSD-LAAVATRL 289 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D +A + + + + G I Sbjct: 290 DGIASSIATAINTAQANGVALDGTAGQPIFS----------------------------- 320 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G+ + + + AG + + E + + Sbjct: 321 ----GTTAATLRVAMVSGAGLATAPAGSPAGSRDQQNLAEMRQALSAANPAEGLNSILFD 376 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + + GV+L E + LI+ +Q++ S K + Sbjct: 377 ISSKVAGRTVTQSALETIASSARIALEEQSGVDLDNEAANLIRYQQAFQASGKAMQVASD 436 Query: 471 MLQTLLEGVK 480 + TLL + Sbjct: 437 IFDTLLGIGR 446 >gi|119469956|ref|ZP_01612761.1| putative flagellar hook-associated protein [Alteromonadales bacterium TW-7] gi|119446666|gb|EAW27939.1| putative flagellar hook-associated protein [Alteromonadales bacterium TW-7] Length = 667 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 65/442 (14%), Positives = 145/442 (32%), Gaps = 7/442 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MS + N A + S+ + +NI N + + YVR T T V Sbjct: 1 MS-FNLLNIASSGVRANSELLQTTSKNIANVNTEGYVRERTEHTTMVDNQVGKGETYRLL 59 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + L+ +S + + + ++D +NS + I+ L ++++ S Sbjct: 60 NQFAQEQLNRDTSNKTFFDQFVTESNRVDSLFSED--SNSLSTSINSLFNNVQESLNQPS 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + V+ +AE +V + + V + ++++++ + ++ +N I Sbjct: 118 STVARSLVMTDAENLVNQMDRLSGIVFDQKNIVNEQLDVFTEEANGLIQKIGTLNQDIAA 177 Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + DA ++RD ++ +SE+I I T+ N + +V+ G + F Sbjct: 178 VNGTNNQADASSTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGTGEAVVMQNGSFNLF 237 Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + ++G V + KGKI LL RD V+ QNQ+ +M Sbjct: 238 SMRGDPDPNFKELRLDVNGGKAVPLEVDVSKLKGKIGGLLAFRDDVLVPAQNQIGQMGLA 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + SF+E++ + ++ G I + + S L Sbjct: 298 IADSFNEQNKLGMDANGEIGGNIFNIPTVGGYAYTANTGSSSMTATLEAGKGSELPASDF 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + + + N + ++ Sbjct: 358 IITYTSASTVEIQPVDNKGEPLGTASTANITAGVIDSSTITSGESFGLEINVAGAANAGD 417 Query: 417 DSHDLHMKSQVVFNHISESYSN 438 ++ + Sbjct: 418 QFQIKLNSESAANMSLATTRGE 439 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 30/389 (7%), Positives = 89/389 (22%), Gaps = 9/389 (2%) Query: 92 ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + S + N + S+ + A Sbjct: 288 QNQIGQMGLAIADSFNEQNKLGMDANGEIGGNIFNIPTVGGYAYTANTGSSSMTATLEAG 347 Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E+ + + + + + + I+ + Sbjct: 348 KGSELPASDFIITYTSASTVEIQPVDNKGEPLGTASTANITAGVIDSSTITSGESFGLEI 407 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 L +++ + + + + N V + Sbjct: 408 NVAGAANAGDQFQIKLNSESAANMSLATTRGEDLALAAPIRTANDINNIGNATITVGEVN 467 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 S + + + + ++ D + ++ + + Sbjct: 468 DVTTGSFTTSPAGLTNGPISVVKTANLNEYTISDGVNTSTFTATLPAKDMLQQAGNGFEL 527 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 G I +P+ + + G + + Sbjct: 528 YGFDFDIEGSPETGDTFTLEFNQG---------GFDDNRNGQKLAGLQQGELVRQNVVSG 578 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + + T + + + + + + + Y + GVNL EE + L Sbjct: 579 TNSDNHKTFNQAYAGLVSDIGVVTNQAKTNGEAFEALAQQSEAWYESLSGVNLDEEAANL 638 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +QSY S +++ + T+L + Sbjct: 639 LRFQQSYAASAQVLATARTVFDTILSAAR 667 >gi|124268248|ref|YP_001022252.1| flagellar hook-associated protein [Methylibium petroleiphilum PM1] gi|124261023|gb|ABM96017.1| flagellar hook-associated protein [Methylibium petroleiphilum PM1] Length = 653 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 48/444 (10%), Positives = 125/444 (28%), Gaps = 18/444 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + + +I NI NA+ Y R+ + V+V Sbjct: 1 MAGLMSLGTRAMFANYATLQTIGNNIANANTPGYSRQQVELGTAGGQSTGAGFFGQGVSV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + + S + E + + + L ++ Sbjct: 61 QTVTRASDAFLTRDAAMSKSQAARDAARLEQLERLEKVF--PTGESGLGYAAGDLLNAFV 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + V+ AEE+ F + ++ +++ ++++ ++ + + Sbjct: 119 DVANRPQDASARQVVLARAEELASRFRAADSQLDALQSGVTEDVKNSVTVVNTLAKRVAD 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I S H +D LDQRD L+ +I + ++TI ++ + V+ G L Sbjct: 179 INRQIAAAQGSGHAPNDLLDQRDQLISEIGSYVQVTTIEADDGSLGVFIGGGQRLVLGSN 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++Y I G ++ GK+ LL ++ + + + + Sbjct: 239 AQQLKVVPDAYDAAKVRLAISEAG-GERLLPEDSLVAGKLPGLLAFQNQDLADARAMIGQ 297 Query: 293 MARVLIGSFSEKDPIAGN-----SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +A + G+ + + + + P + + + + Sbjct: 298 LASAIAGAVNRQQSLGLDLGQPAGSGAPMFALGAPAALPASTNARDAGGNFLSSVSLTVA 357 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + L + + D R Sbjct: 358 DPKQLQASDYELRTDASTPGQYFLTRLSDGVTRTVADGDTVDGFTLAIGTPAPGATDRFL 417 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNH 431 + + + + + Sbjct: 418 LQPVSQAAQGMARVLNNPNGIAAS 441 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 40/434 (9%), Positives = 106/434 (24%), Gaps = 5/434 (1%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + L A ++ + + + Sbjct: 220 DGSLGVFIGGGQRLVLGSNAQQLKVVPDAYDAAKVRLAISEAGGERLLPEDSLVA-GKLP 278 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 L + + + + V + ++ + L Sbjct: 279 GLLAFQNQDLA---DARAMIGQLASAIAGAVNRQQSLGLDLGQPAGSGAPMFALGAPAAL 335 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + + L D L+ + G + R ++ + +DG Sbjct: 336 PASTNARDAGGNFLSSVSLTVADPKQLQASDYELRTDASTPGQYFLTRLSDGVTRTVADG 395 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 T+ + + G+ N + + + Sbjct: 396 DTVDGFTLAIGTPAPGATDRFLLQPVSQAAQGMARVLNNPNGIAASSPVVATVASGNTGT 455 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L + L + + +S N G + + + + + Sbjct: 456 ATVGSLTVTSTALDPTQTANISFTDDSGNYNWELRDAGNAVVSSGTGTWTAGSTIALNGF 515 Query: 345 RSNPSFLRDGGSVSKKFLWN-VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + G + G + D+ ++ ++ Sbjct: 516 ELTLAGVPRSGDAVQVAPTTFPAANNGNALSLLALRDAGIVGEQLLAGGVVSAGESITSA 575 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +++ + + S V + + + GVNL EE + LI+ +Q+Y + K Sbjct: 576 YASAMADIGVRVQSARSSSNISTAVATNAEAARAGVSGVNLDEEAARLIQFQQAYQAAAK 635 Query: 464 LIMFTDKMLQTLLE 477 ++ + TLL Sbjct: 636 VLQVAQSVFDTLLS 649 >gi|148259129|ref|YP_001233256.1| flagellar hook-associated protein FlgK [Acidiphilium cryptum JF-5] gi|146400810|gb|ABQ29337.1| flagellar hook-associated protein FlgK [Acidiphilium cryptum JF-5] Length = 485 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 73/490 (14%), Positives = 155/490 (31%), Gaps = 15/490 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55 MS+ A + + QQ A + +NI NA+ Y + + Sbjct: 1 MSVGTGLAIASSGLSAIDQQLAVVSQNIANANTSGYSVETANLSAATAGGQGSGVISAPA 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + Q ++ + + + + N ++ ++ ++ Sbjct: 61 TRQVNTSIQTQVNNSIAQQSYQAVISTTLSGIDQVMGTPGQGNDLPSLLANVQSGFQTLM 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + TV+ A+ + N+ A +Q A I +I L L + +N Sbjct: 121 TDPSNVVQQNTVVSAAKTLTGQINSIASTLQSAGQSAASTITADIKKLNSTLGTIGSLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I D +QRD +Q I+ + G + + N + ++T +G I Sbjct: 181 QIVNLAQQNKSTADLANQRDAAIQTIASLTGAKALTQTNGSIALFTVNGIQFPLNGSSPI 240 Query: 236 NFEK-----MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S T + + G N + + + Q S L Sbjct: 241 TATTTTNNTSYSIGGTPVTFGGELGGAQQLINATLPQIQAGLDSFSQALSSRFAGAGLSL 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + K A + N + ++D + + I NP Sbjct: 301 FTDPIGNVPTAATKGLSAVITVNPAVISNPALVRDGNVTVTNASGTPIPPNPAGGPAGYT 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 ++ F + P I Y D+ + + +L A N Sbjct: 361 ALIQNVLNSAFGTTTVGGSAQPPAITAYTDATGTVSLPYS-----GSGSLSAIATNFTAN 415 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S + + + S+T GVN+ +++S L+ ++ +Y + K + + Sbjct: 416 EASISSAALTQVSNVGNLVTALKAQASSTSGVNIDQQMSLLVTLQNAYAANAKTVTIAQQ 475 Query: 471 MLQTLLEGVK 480 M Q + V+ Sbjct: 476 MWQAVQAMVQ 485 >gi|229144365|ref|ZP_04272771.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] gi|228639152|gb|EEK95576.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] Length = 437 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NSGNVEYTRKGSFSVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +G++ + Y + + + + Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|326402283|ref|YP_004282364.1| flagellar hook-associated protein [Acidiphilium multivorum AIU301] gi|325049144|dbj|BAJ79482.1| flagellar hook-associated protein [Acidiphilium multivorum AIU301] Length = 485 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 74/490 (15%), Positives = 158/490 (32%), Gaps = 15/490 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55 MS+ A + + QQ A + +NI NA+ Y + + Sbjct: 1 MSVGTGLAIASSGLSAIDQQLAVVSQNIANANTSGYSVETANLSSATAGGQGSGVISAPA 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + Q ++ + + + + N ++ ++ ++ Sbjct: 61 TRQVNTSIQTQVNNSIAQQSYQAVISTTLSGIDQVMGTPGQGNDLPSLLANVQSGFQTLM 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + TV+ A+ + N+ A +Q A I ++ L LS + +N Sbjct: 121 TDPSNVVQQNTVVSAAKTLTGQINSIASTLQSASQSAASTITEDLKKLNSTLSTIGSLNA 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I D +QRD +Q I+ + G + + N + ++T +G L I Sbjct: 181 QIVNLAQQNKSTADLANQRDAAIQTIASLTGAKALTQTNGSIALFTVNGIQLPLNGSSPI 240 Query: 236 NFEKMNSYTVTSESN-----PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + T S + G +N + + + Q S L Sbjct: 241 TATTTTNSTSYSIGGTPVTFGGELGGAQQLNNATLPQIQAGLDSFSQALSSRFAGAGLSL 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + K A + N + ++D + + I NP Sbjct: 301 FTDPIGNVPTAATKGLSAVITVNPAVISNPALVRDGNVTVTNASGTPIPPNPAGGPAGYT 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 ++ F + P I Y D+ + + +L A N Sbjct: 361 ALIQNVLNSAFGTTTVGGSAQPPAITAYTDATGTVSLPYS-----GSGSLSAIATNFTAN 415 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S + + + S+T GVN+ +++S L+ ++ +Y + K + + Sbjct: 416 EASISSAALTQVSNVGNLVTALKAQASSTSGVNIDQQMSLLVTLQNAYAANAKTVTIAQQ 475 Query: 471 MLQTLLEGVK 480 M Q + V+ Sbjct: 476 MWQAVQAMVQ 485 >gi|229090715|ref|ZP_04221948.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] gi|228692657|gb|EEL46383.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] Length = 437 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + S + ++ + + Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + + TL + + E ++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V + V V ++ + I+ + + + N V + Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + G++ + Y + + + + Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|218902868|ref|YP_002450702.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] gi|218535884|gb|ACK88282.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] Length = 437 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 128/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + + TL + + E ++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V + V V ++ + I+ + + + N V + Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + G++ + Y + + + + Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|30261751|ref|NP_844128.1| flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47526975|ref|YP_018324.1| flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49184583|ref|YP_027835.1| flagellar hook protein FlgE [Bacillus anthracis str. Sterne] gi|65319023|ref|ZP_00391982.1| COG1749: Flagellar hook protein FlgE [Bacillus anthracis str. A2012] gi|165869249|ref|ZP_02213908.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167633465|ref|ZP_02391790.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|167639152|ref|ZP_02397425.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|170686150|ref|ZP_02877372.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|170706520|ref|ZP_02896980.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|177650602|ref|ZP_02933569.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190566422|ref|ZP_03019340.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227815486|ref|YP_002815495.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229600977|ref|YP_002866149.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] gi|254683244|ref|ZP_05147105.1| flagellar hook protein FlgE [Bacillus anthracis str. CNEVA-9066] gi|254723830|ref|ZP_05185616.1| flagellar hook protein FlgE [Bacillus anthracis str. A1055] gi|254734597|ref|ZP_05192309.1| flagellar hook protein FlgE [Bacillus anthracis str. Western North America USA6153] gi|254741006|ref|ZP_05198694.1| flagellar hook protein FlgE [Bacillus anthracis str. Kruger B] gi|254755249|ref|ZP_05207283.1| flagellar hook protein FlgE [Bacillus anthracis str. Vollum] gi|254759785|ref|ZP_05211809.1| flagellar hook protein FlgE [Bacillus anthracis str. Australia 94] gi|30255979|gb|AAP25614.1| putative flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47502123|gb|AAT30799.1| putative flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49178510|gb|AAT53886.1| flagellar hook protein FlgE, putative [Bacillus anthracis str. Sterne] gi|164714689|gb|EDR20207.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167512942|gb|EDR88315.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|167531503|gb|EDR94181.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|170128618|gb|EDS97485.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|170669847|gb|EDT20588.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|172083746|gb|EDT68806.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190562557|gb|EDV16524.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227006608|gb|ACP16351.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229265385|gb|ACQ47022.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] Length = 437 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 47/478 (9%), Positives = 128/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGE- 278 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G++ + Y + + + + Sbjct: 279 -----------------IIKGGSVQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|209547946|ref|YP_002279863.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533702|gb|ACI53637.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 116/481 (24%), Gaps = 49/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + E N + Sbjct: 61 QSSVRQAVSDQGDISYTTSGTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + D I + L + A Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVSQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ ++ ++ + V ++ + Sbjct: 181 APSANLGTTTTDTKKVSMVAYDRLGNKVMYDFYFTKASVAAAPPPAPPATAATWEVAMFR 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + V ++ + G V + + GK+ + + Sbjct: 241 NANAAVGGTTSFPYTAGGAVGNGTLTFDSNGKMTSSGAVN-------------------- 280 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D Q I+ Q ++ S + Sbjct: 281 -------------------------ITDGVTGQTIAMDFSGLTQLGADFSGTGTPNGQAA 315 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432 Query: 480 K 480 + Sbjct: 433 R 433 >gi|294013092|ref|YP_003546552.1| flagellar hook-associated protein 1 FlgK [Sphingobium japonicum UT26S] gi|292676422|dbj|BAI97940.1| flagellar hook-associated protein 1 FlgK [Sphingobium japonicum UT26S] Length = 446 Score = 132 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 148/492 (30%), Gaps = 61/492 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 + +F + A++ NI NA + Y RR T S Sbjct: 1 MSDLFIIGASGTKAYRTAMAAVSENIANASTEGYSRRSVTTVESGSSTATMAVYISRANF 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + D + ++ +G + L + +A + ++ + Sbjct: 61 GGTDVKSVNRATDPYLDATVRYTNTQLGSAVARMRW--LTDSETALNDTETGIGQLMTGM 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 +++ + + ++ L T +D+ V Q FN +A ++ ++ + E + ++ + + L Sbjct: 119 FQNMDKLAASPNDKSLRVTTLDSIGRVAQAFNQTAADLAQVSSGIATEAQASVTTINQAL 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S L +N+++ LD RD L +S + I ++ V + T + Sbjct: 179 SALADINNSLLRAQPGTSAYAQLLDSRDAALGTLSSNLNIDVSFGTHDQAQVTLNGQTLV 238 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + T+ ++ S G + L V + Sbjct: 239 QGDAATPLALTVNADGTLALGTSAGAALAAPTS---------GTLGGLFSAA-GTVSQRR 288 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 LD +A+ + + + + Sbjct: 289 ASLDTLAQQFVANLNAWHAQGLT----------------------------------DGS 314 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P ++ L D + + N ++ + Sbjct: 315 PGAAGAPLLSGASAATVTALISDPNQLAVKSSDGTANGNLLTVSTVLRGNGSVEQGWTAL 374 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I S + +Q + + GV+L E + L++++Q+Y+ K++ Sbjct: 375 IATHANLLSSTKAEQTTAQSRSDQAVAAREAVSGVDLDMEAADLLRIQQAYSGCAKILQV 434 Query: 468 TDKMLQTLLEGV 479 + + +L+ + Sbjct: 435 AKETVDAILQII 446 >gi|197285510|ref|YP_002151382.1| flagellar hook protein FlgE [Proteus mirabilis HI4320] gi|227356001|ref|ZP_03840393.1| flagellar hook protein [Proteus mirabilis ATCC 29906] gi|194682997|emb|CAR43446.1| flagellar hook protein [Proteus mirabilis HI4320] gi|227163989|gb|EEI48891.1| flagellar hook protein [Proteus mirabilis ATCC 29906] Length = 406 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 119/476 (25%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ +I NI N+ + ++N Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGATVSFADVFAGSGAGLGVKVSGISQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + Y N+ Sbjct: 62 KDGSITTTNRPTDVAISGGGFFRIED------SNGGVFYSRNGEFGKDKNGYLTNMQGMR 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + I + + ++ + + Sbjct: 116 ITGYPVQ----------NVDGKNVVQKGATPTPIIIPTDMMNASATDKMDMTVNLNSAEE 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +D S + + N +++ ++ +V + Sbjct: 166 AIDQTTHKFDPKDNDSYNFSTNVTTYDSLGNEHNLNLFFVKTKDNEWSVYAQDTTTGEPA 225 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + L+ + V+ +L V Sbjct: 226 QD---------------------------LGKLVYKDNGVLDETAPKLKNFTTVAYKGSQ 258 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D Q + S + + + Sbjct: 259 PMD---------------------------MEMNFSGSTQQKVAESSVSKLAQNGYQAGE 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + ++ +A L N W E N S S + Sbjct: 292 FTNFRIEPDGSIMATYSNQQSQVVGQIALANFANPGGLSSQGDNM--WSETNGSGSPIVG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + VF ++ + V++ +EL +I +++Y + + I D++LQTL+ Sbjct: 350 VAGSGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 405 >gi|77359728|ref|YP_339303.1| flagellar hook-associated [Pseudoalteromonas haloplanktis TAC125] gi|76874639|emb|CAI85860.1| putative flagellar hook-associated [Pseudoalteromonas haloplanktis TAC125] Length = 670 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 63/443 (14%), Positives = 137/443 (30%), Gaps = 8/443 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59 MS + N A + + + +NI N + YVR T V Sbjct: 1 MS-FNLLNIANSGIRANTDLLQTTSKNIANVNTDGYVRERTEHGTMIDNQVGKGNTYRLL 59 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 K L+ +S S + + + + NS + I+ L ++++ S Sbjct: 60 NEFAQKQLNRDTSNKTFFDQFVSEANRVDTLFSQEA--NSLSTGINSLFNNVQEALNQPS 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178 + V+ NA+ ++ + + V + ++++E+ + ++ +N I Sbjct: 118 STVARSLVMTNADSLISQMDRLSGIVLDQKNVVNEQLEIFSDEANTLIQKIGSLNQQIAG 177 Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 T + A ++RD ++ +SE+I I T+ N + +V+ G + F Sbjct: 178 VNGTNNASAASGTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGSGEAVVMQNGSFNLF 237 Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + ++G V ++ KGKI LL RD ++ QNQ+ +M Sbjct: 238 SMRGDPDPNFKELRLDVNGGKAVPLEVDASKLKGKIGGLLAFRDDILVPAQNQIGQMGLA 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L +F++++ + ++ G I + S L Sbjct: 298 LADAFNQQNHLGMDANGKLGGDIFNIPTAKGFAYQANTGGAGVSATVEPGKGSNLPASDF 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-GWLEKNR 415 + + D + N + + + Sbjct: 358 IVTYTANPNEVSIQPVDNKGEPLGAATTATFVGGEINSANNPGVDLFGLQLTMAGVGNEG 417 Query: 416 SDSHDLHMKSQVVFNHISESYSN 438 ++ Sbjct: 418 DKFQIKLNSEAAANITLATGRGE 440 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 26/255 (10%), Positives = 61/255 (23%), Gaps = 9/255 (3%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +I + S D + + + + + P Sbjct: 424 LNSEAAANITLATGRGEDLALASPIRTADDINNTGSGAISAGSVSSVTAGGFTTTTPPAL 483 Query: 287 QN-QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 N + + + D N + + L + Sbjct: 484 ANGDITIVKAAGTNDYLISDGNGANVPITIAPPGKNVLAGLGAPYDGYGFDFDIEGSPAT 543 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + L + + + + + + T + Sbjct: 544 GDSFTLEFNKG--------GFDDNRNGLKLAELQNGDLVRQNVVSSSDADNHKTFNQAYA 595 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + Y + GVNL EE + L++ +QSY S +++ Sbjct: 596 GLVTDIGVVTGQAKTNGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYAASAQVL 655 Query: 466 MFTDKMLQTLLEGVK 480 + TLL + Sbjct: 656 SAARSIFDTLLSATR 670 >gi|330830303|ref|YP_004393255.1| flagellar hook protein FlgE [Aeromonas veronii B565] gi|328805439|gb|AEB50638.1| Flagellar hook protein FlgE [Aeromonas veronii B565] Length = 450 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 57/483 (11%), Positives = 116/483 (24%), Gaps = 45/483 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N + + N V Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++A+ F + ++ D + + SY Sbjct: 62 GAVAQQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLNENSYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L I+ + + +Q I + N Sbjct: 118 VNNQGHYLQGYEINTDGTPKAVSINATKPIQ---------IPDRAGEPIKTSKIEASFNL 168 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 T D +D S + I + + T+ + RD Sbjct: 169 PSTSTTKPHLFNPSNFDPKDSKTYSSSTSVVIYDSLGEPH----------TITKYFVRDA 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + G + + + ++ Sbjct: 219 DTTDPTKPADPPSWRMYLYQGDKPIDI---------VGGAQPTMAPTLSQA-PRAAQITF 268 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + P+ ++ + GI Q + QY S + Sbjct: 269 GSDGKMNAVTPLTLKTQPLGPGVGNAGIITNGADPTQQVDIVFGTVTQYASPFEVSKLTQ 328 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 S + + Y ++ +A + L + W + Sbjct: 329 DGSTVGRLTKVEITPDGIVSATYSNATTIKVAMVAMAKFANSQGLTQVGD--TSWRQSLL 386 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + QT+ Sbjct: 387 SGDALPGTPNSGTFGTIKSSALEQSNVDLTSELVDLITAQRNFQANSRSLEVNSSLQQTI 446 Query: 476 LEG 478 L+ Sbjct: 447 LQI 449 >gi|228933037|ref|ZP_04095900.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826638|gb|EEM72409.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 437 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + S + ++ + + Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|84624094|ref|YP_451466.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368034|dbj|BAE69192.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 624 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 131/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I +++++ A D LDQRD L+ ++ G + ++++ + V+T+ G L Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSELVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGT 399 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSELVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S + + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + N + + ++ + + + Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334 ++ + + ++ + + P L ++ +D Sbjct: 419 SVAITDPSRIAAATPVKATATVANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 ++ + + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + ++ +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D M Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTMFQAILGAVR 624 >gi|28275264|ref|NP_783519.1| flagellar hook-associated protein [Shewanella oneidensis MR-1] Length = 386 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/352 (13%), Positives = 108/352 (30%), Gaps = 17/352 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ T V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTVGYHRQVATQTTLDSQRLGSSFYGTGTYVSD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQIFSQ--IGKVVPQSLTDLFAGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLNQTNDQITGMTKRINEISTELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I N + L Sbjct: 182 LELMKSP---NQDPILLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGSIMLVSGEVAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 I V ++ + G++ AL + RD + +LD++A Sbjct: 239 SMSTATGDPFPNELQLMSSIGSQSVKADP--SKLGGQLGALFEYRDQTLVPASLELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + SF++ + G + I D L + T Sbjct: 297 LGVADSFNKLQAQGFDLNGQVGANMFKDINDPLMSLGRVGGFTDNTGNATLG 348 >gi|183179571|ref|ZP_02957782.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-3] gi|183012982|gb|EDT88282.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-3] Length = 624 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|153834473|ref|ZP_01987140.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] gi|148869169|gb|EDL68201.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] Length = 637 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 58/395 (14%), Positives = 130/395 (32%), Gaps = 26/395 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ +L + +++ D++++ Sbjct: 63 NVRRSWDEFAVKELNLSTTNYAN-KLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K V++ A+ + N V++ +K +++ I + + E+ V Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVTNKSLDMGIERVNQLAVEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232 + + +D +DQ + L++++SE ++ R N++ V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S V + G + + GKI ALL++RD +P ++L Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343 +A + + G + + + ++ + Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYVNDISA 356 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + LR G N + + D N + Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAF 391 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + +A + + + L G + KF N+ G Sbjct: 476 DTKGNVLMAPQPYPPTGPVSVSLPSNHPAYNNGGATVFELSAGALANDKFTANLVPSEGD 535 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + T++ N + S + L +Q+ Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E ++ GVNL EE + ++K +Q+Y S++++ + T+L+ Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636 >gi|192292820|ref|YP_001993425.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris TIE-1] gi|192286569|gb|ACF02950.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris TIE-1] Length = 623 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 73/458 (15%), Positives = 154/458 (33%), Gaps = 22/458 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A + + N+ NA+ YVR+ + + +V VV Sbjct: 1 MSLGDALAIAMAGLRVNQATMSLVSSNVANAETPGYVRKTVNQSAVNAGETGTSVKVVGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L +S L F + + D + + + + + L +L++ + Sbjct: 61 DRQLDDYILAQLRTETSGGAYASLRSDFLKQLQGLFGDPNSSGTLENSYNGLTTALQALA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A+ + N N+++ +Q +RA + I ++ + ++ +N Sbjct: 121 TSPDSTSARIAVLNAAQAISSNLNSTSNGIQTLRAGCETGIADAVTTANNLMQQIANINT 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ LDQRD + ++S+++ I + N + V+T G L Sbjct: 181 HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIRVVTNGANQVTVFTGSGVQLVGME 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281 + F + + T+ NP SS+ S++ GK+ A +++RD Sbjct: 241 AAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANGSSSDLTSSLKSGKLAAYVELRDK 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + Q QLD+ A L + S+K + + + + IS T + Sbjct: 301 TLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAGFSLDLSSMKTGNTVNISYTDTLT 360 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + +R N + + A + N+ Sbjct: 361 GAQHT-VTVVRVDDPSVLPLPQNATADPNDYAVGIDFSGLSGSVVSQLNAALNSRNLQFS 419 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 A N + N S ++ ++ Sbjct: 420 GTAPNIT--VLNNAGFSTITAASVTSTETSLTGGTASV 455 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 54/470 (11%), Positives = 127/470 (27%), Gaps = 25/470 (5%) Query: 23 SIVRN----IENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78 + N I N + +P T + S + R Sbjct: 166 TTANNLMQQIANINT--------HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIR 217 Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVV 135 ++ + + + + N + I I Sbjct: 218 VVTNGANQVTVFTGSGVQLVGMEAAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANG 277 Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + ++ A + + + + L + + + A Q Sbjct: 278 SSSDLTSSLKSGKLAAYVELRDKTLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAG 337 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 L S G + + + + T + P + + + + I Sbjct: 338 FSLDLSSMKTGNTVNISYTDTLTGAQHTVTVVRVDDPSVLPLPQNATADPNDYAVGIDFS 397 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 G+ S ++ S L+ I + S + Sbjct: 398 GLSGSVVSQLNAALNS----RNLQFSGTAPNITVLNNAGFSTITAASVTSTETSLTGGTA 453 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + + G + Q S + L S + + AG Sbjct: 454 SVPLFNDNGAAYTGAINGYGSQMTGYAQRISVNADLIKDNSRLVVYSTSPLTAAGDTTRP 513 Query: 376 NHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + N + + TLL Y + + N + + L VV Sbjct: 514 DFLVKQLNTSKYLYSAKTGIGSDAAPYKGTLLSYLQQFVSQQGSNAAAAQQLSEGQNVVL 573 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 N + + +S + GVN+ EE++ L+ ++ +Y + +++ ++M Q+L++ + Sbjct: 574 NTLQQKFSTSSGVNMDEEMAHLLSLQNAYAANARVMSTINQMYQSLMQAI 623 >gi|326319097|ref|YP_004236769.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375933|gb|ADX48202.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 425 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 118/473 (24%), Gaps = 50/473 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I N+ N+ + N Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIG------------- 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S+ + A+ + + + + ++ D + + + Sbjct: 49 -----SAGGTNAGIGVELSAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSRAYTR 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + Q + +V D I + + +T + Sbjct: 104 AGNFKLDSNGQLVTNTKAQVMGYALD---PITGKRTASNAAPLSFPTSKPIPAKQTTAIT 160 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + + + R+ + D + + V N++ V Sbjct: 161 AEFNLDARAPDAAGDATATPPVPATPRSTYGTSINVYDSQGVAKPVSLYFQKNGANTWDV 220 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + VV++ G K + + FQ L Sbjct: 221 YDKLDDATATPPVVATPIGQIKFDNSGKIVSPTATAPETGFQMPLTVKPT---------- 270 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + ++ + QY + Sbjct: 271 -----------------PPNPNGLADYTVNIKLDGVSQYGKAFAVSNLSQDGYTAGELTG 313 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++ Y + + +A L N W+E S L + Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQVALASFRNTQGLASVGSN--NWVETFESGQPVLGTPT 371 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + V+L EL ++ +++Y + + I D+++ TL+ Sbjct: 372 EGKFGGLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 424 >gi|58582202|ref|YP_201218.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576762|ref|YP_001913691.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576954|ref|YP_001913883.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426796|gb|AAW75833.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521214|gb|ACD59159.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521406|gb|ACD59351.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] Length = 624 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 53/404 (13%), Positives = 131/404 (32%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I +++++ A D LDQRD L+ K+ G + ++++ + V+T+ G L Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W N + + + + + V+ + Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGT 399 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99 + ++ +M D+ S +G + ++ Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + ++ + ++ +A+ + Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218 S + + A+ + + + +S +S + N + Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + + + N + + ++ + + + Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334 ++ + + ++ + + P L ++ +D Sbjct: 419 SVAITDPSRIAAATPVKATATLANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 ++ + + + + ++ I D A Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 VTL + ++ +V+ + S + GVNL EE + ++K+ Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q+Y + ++I D M Q +L V+ Sbjct: 599 QQAYQAAAQMISTADTMFQAILGAVR 624 >gi|52143704|ref|YP_083124.1| flagellar hook protein FlgE [Bacillus cereus E33L] gi|228926789|ref|ZP_04089857.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121305|ref|ZP_04250536.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|51977173|gb|AAU18723.1| flagellar hook protein [Bacillus cereus E33L] gi|228662150|gb|EEL17759.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|228832902|gb|EEM78471.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 437 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 127/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + + TL + + E ++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V + V V ++ + I + + + N V + Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIVGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + G++ + Y + + + + Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|328545491|ref|YP_004305600.1| flagellar basal body FlaE [polymorphum gilvum SL003B-26A1] gi|326415232|gb|ADZ72295.1| Flagellar basal body FlaE [Polymorphum gilvum SL003B-26A1] Length = 424 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 52/481 (10%), Positives = 109/481 (22%), Gaps = 58/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL V + N S + ++ NI N+ Y R + + + T S Sbjct: 1 MSLYGVMRTGVSGMNAQSSKLGTVADNIANSSTTGYKRAASEFSSMILSQGTGTYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + AI S + Y N + Sbjct: 61 KAHTVYAISQQGAISYTTSGLDLAIDGNGFFVVADREGSTALTRAGSFVVDSKGYLVNTA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L I N V + + +S + Sbjct: 121 GYYLQGYPIGNGGTVA-----------PVANGLGGLENVNVSQSKLEAVPTDSALLWANV 169 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + A L + S + N + + D Sbjct: 170 PEDAAIVAAADLPSANAATATYSAKTSLIVYDNLGNAVTLDIYYSKATETAADSDWEVTI 229 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N+ + + + G + A +V + D + Sbjct: 230 YNADDAAPGGGFPYGAPALATQTITFDRTTGNLAAASPTDITVAVPNGSTFDLDMSGM-- 287 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + + + Sbjct: 288 ------------------------------------------TYLNADFTITEVDANGNA 305 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 A L Y + + P+A + + L + N N S Sbjct: 306 PSAVESVEFADDGTLFAVYANGDRRALYRIPLADVPSPDKLTPLSGNIYTV--SNNSGEV 363 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + ++ + V+L EL+ +I+ ++ Y ++K+ +L+ L+ V Sbjct: 364 RVGFPGEGGLGSLTVGALESSNVDLASELTSMIESQRGYTANSKVFKAGSDLLEELVNLV 423 Query: 480 K 480 + Sbjct: 424 R 424 >gi|325916941|ref|ZP_08179185.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria ATCC 35937] gi|325536844|gb|EGD08596.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria ATCC 35937] Length = 624 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 53/404 (13%), Positives = 126/404 (31%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSAVDEVNRLTQQIAKIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTIGNSAANAAP--DMLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTSS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R SV+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F+ + G + + ++ Sbjct: 296 VGMASTFNAGHAQGMDLYGAMGGNFFNVGSPTTAANPNNTGTAALTASFSNMSAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W + + + + + + V + Sbjct: 356 TLSFDGTAWKATSASTGAAVPMTGTGTAADPLVLNGVRMVVGGA 399 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 47/466 (10%), Positives = 120/466 (25%), Gaps = 31/466 (6%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ---------------RLLQSFEALKEMM 90 S V + + +SA +++ Sbjct: 159 SGLTSAVDEVNRLTQQIAKINGTIGNSAANAAPDMLDQRDALVSKLVGYTGGTAVIQDGG 218 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + L + + L + + V + N+ ++ + Sbjct: 219 FMNVFTAGGQALVVGTTSSKLTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLE 278 Query: 151 DADKEIELEISNLRRFLSELTVVNDA-----IKFKTASKHDAHDFLDQRDVLLQKISEII 205 +E + L R + +A + A + + + Sbjct: 279 FRSSVLEPTQAELGRLAVGMASTFNAGHAQGMDLYGAMGGNFFNVGSPTTAANPNNTGTA 338 Query: 206 GISTIVRNN---NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 ++ N + V S T ++ + T T+ + +V Sbjct: 339 ALTASFSNMSAVDGQNVTLSFDGTAWKATSASTGAAVPMTGTGTAADPLVLNGVRMVVGG 398 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 ++ K ++ + ++ + A + + + + + + A Sbjct: 399 APASGDKFLLQPTAGLAGTLSVAITDPSRIAAATPVKATATIANLGTGKISDVKVTNAQN 458 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRD--------GGSVSKKFLWNVKNLAGYPDL 374 L + I + + Sbjct: 459 PALLTPSSVEFIDANQYTIDGTGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAG 518 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + ++ I D A + VTL + + +V+ + Sbjct: 519 SSDNGNAKLLAKIDDAKALNSGTVTLNGALSGLTTSVGSAARAADYAADAQKVINDQAQA 578 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S + GVNL EE + ++K++Q+Y + ++I D + Q +L V+ Sbjct: 579 SRDSISGVNLDEEAANMLKLQQAYQAAAQMISTADTIFQAILGAVR 624 >gi|294508671|ref|YP_003572730.1| flagellar hook associated protein 1 [Salinibacter ruber M8] gi|294345000|emb|CBH25778.1| flagellar hook associated protein 1 [Salinibacter ruber M8] Length = 465 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 63/497 (12%), Positives = 157/497 (31%), Gaps = 49/497 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----------------RRDTMT 43 MS+ ++F+ ++ + +NI NA+++ Y + Sbjct: 1 MSVNSLFDIGSTSLRAVGEKIDATSQNIANAESEGYRRRRVSLSSRSVAATGLYASNGAQ 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 ++ V V M + S R + E A + + Sbjct: 61 DVTSSGVGVEQFERVRDGMLVSARNDAQSGESDAREEGRVLGVLEGALA-TDTDAGLSAS 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + L D + + N + ++V+ A ++ F + + ++ + + + + Sbjct: 120 LQGLADGFSNLANNPESQGVRESVLGRARQLTDTFGRLDQRLGELTTNTENALASNVEKA 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L ++ +N+ I+ A + DQRD ++++S+++ + ++ + T D Sbjct: 180 NGLLDKVASLNEQIESARAGGSPDYAAEDQRDQTVKELSKLLPVDAQENRSDGYTL-TVD 238 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G T+ + + + + + GV S G+I A ++ + + Sbjct: 239 GMTVVQGDDATALSLENENDPSKAPTVEFGDTGVAFEPGDES---GGEIGAQTRLLNDTL 295 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P Q +LD +A ++ + + + G Sbjct: 296 PGVQGKLDALADEVLQKVNGEHTAGYDQNGGTGENFF----------------------- 332 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 G+ + NV + + + L Sbjct: 333 ----VDKSGTTGNTAGNIELNVDGPEDIAAVAGDGSGNPLPGDTGPAQNIADVASDLTTG 388 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 A + + ++ V + + GV++ ++LS LI+ +Q + S + Sbjct: 389 ATDLAAGVGTQVQEAAAKEEAQAAVGERVQAQIEDVSGVSVDQQLSSLIEQQQQFAASAQ 448 Query: 464 LIMFTDKMLQTLLEGVK 480 ++ ++ TLL + Sbjct: 449 VLTTAREVSSTLLSIAR 465 >gi|225375213|ref|ZP_03752434.1| hypothetical protein ROSEINA2194_00838 [Roseburia inulinivorans DSM 16841] gi|225212880|gb|EEG95234.1| hypothetical protein ROSEINA2194_00838 [Roseburia inulinivorans DSM 16841] Length = 610 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 142/476 (29%), Gaps = 42/476 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49 S A + + + NI N K Y R+ + Sbjct: 3 SQFFGLTIASSGLSAYQAALNTTANNISNEQTKGYSRQAANLSASDALRVNAKYGSMGSG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VTV + + +D + +++G S+ E DD + ++K+ + Sbjct: 63 VTVNSIKQIRSEYYDTKYWQNQASLGLYETKLSYLEQIENYFIDDDTEKGFSTILNKMFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 SL++ N + + + I +A+ FN+ A + +I+ ++EI+ + N+ + Sbjct: 123 SLDTLKNNAGDVNVRQQFISDAQSFTTYFNSVATGLGEIQDSVNEEIKSTVENINAIGKK 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222 ++++N I A++ DQR +L+ ++S I+ + Sbjct: 183 ISLLNKQINVIEVQGGYANELRDQRALLIDELSSIVPTEVSEVPVTNSKHSDMQTGANYY 242 Query: 223 ----DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKA 274 +G +T T+ + V + GS G +KA Sbjct: 243 TVKINGQKFVDTYEYSELTCVARKNTINQSDREGMYEIVWADTGNSFKAGSDSSSGSLKA 302 Query: 275 LLQIRDSVVPI---------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 L IRD + + + P G + Sbjct: 303 LFDIRDGNNSENFRGAITGVTAGTIRISNPSITNVNAMTMPAEGVLTIDGKNYNYTDFTF 362 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL----AGYPDLINHYCDS 381 + T + Q S+ DG S + + A + + ++ S Sbjct: 363 TTDADGNVKEYTFTLENQLSSDQQAKLDGKQASIGESIDAMGIPYYLAQMNEFLRNFAIS 422 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 FN+ D +N T Y G K + H + Y Sbjct: 423 FNEIMNGDNAQDLNGKQT--NYFSFFTGTHTKTGEEYHFNKAAGTYQAKTSNSYYQ 476 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 35/340 (10%), Positives = 83/340 (24%), Gaps = 16/340 (4%) Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I + N +S D RD + Sbjct: 267 NTINQSDREGMYEIVWADTGNSFKAGSDSSSGSLKALFDIRDGNNSENFRGAITGVTAGT 326 Query: 214 NNDMVVYTSDGT--------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 ++ L + + S+ Sbjct: 327 IRISNPSITNVNAMTMPAEGVLTIDGKNYNYTDFTFTTDADGNVKEYTFTLENQLSSDQQ 386 Query: 266 AVPKGKIKALLQIRDSV-----VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 A GK ++ + D++ + L A + + N + Sbjct: 387 AKLDGKQASIGESIDAMGIPYYLAQMNEFLRNFAISFNEIMNGDNAQDLNGKQTNYFSFF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 G + + ++ L G + I + D Sbjct: 447 TGTHTKTGEEYHFNKAAGTYQAKTSNSYYQLTCGNVCVSNIAVKDPTTIATTEKITNGAD 506 Query: 381 SFN---KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 +++ K + + ++ + I + + + + N I + Sbjct: 507 AYDLVEKMLLLKSDTEMYRGGGADDFLQCMISDISVDTQKATIFQKNYSNISNAIDKQRM 566 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + GV+ EE L+K + +YN+S+K++ ++ L+ Sbjct: 567 SVSGVDKDEEAIDLVKFQNAYNLSSKMVSVLAEIYDKLIN 606 >gi|296133040|ref|YP_003640287.1| fagellar hook-basal body protein [Thermincola sp. JR] gi|296031618|gb|ADG82386.1| fagellar hook-basal body protein [Thermincola potens JR] Length = 419 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 50/485 (10%), Positives = 112/485 (23%), Gaps = 73/485 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + I NI N + Y + + Sbjct: 1 MMRSMFAGVSGLRNHQVRMDVIGNNIANVNTIGYKKARATFQD----------------I 44 Query: 63 FDKVLHAHSSAIG-------QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + SS Q L + + + + Sbjct: 45 LSQNIRGASSPTATRGGTNPMQVGLGMTINTIDTIHTQGSSETTGKVTDMMVDGDGFFIV 104 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + + V NTS VQ AD+ I+ ++ + + + Sbjct: 105 GDGTNRFYTRAGNFDFDAVGNLINTSGLLVQGWMADSQGNIDTTVAISGIKIPKGQSIQP 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 ++ Q D Sbjct: 165 KATENATFVNNLDAGTPQYDN--------------------------------------- 185 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 V + G + + + + Sbjct: 186 -TVTPPVGVVATTLEIYDSLGNAYNLPIEFRKTANSNEWSVVVDPQGTFTAATLAVTTTS 244 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 LI + D + Q I + QY + + Sbjct: 245 NLIFDGNGNYKAG--------DLTIDLTNFTNGANDQSIKVDLTKITQYAGESNVEPNFQ 296 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + N + + + + K +A N L++ N N Sbjct: 297 DGYASGVLNGYAIDSSGVITGQFSNGLTKQLAQVALANFNNPAGLMKVGGNLFTQ--SNN 354 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + IS V+L +E + +I ++ + ++++I +D+MLQ L Sbjct: 355 SGNAQIGAAGTGGRGEISPGKLEMSNVDLSQEFTDMIITQRGFQANSRIITVSDEMLQEL 414 Query: 476 LEGVK 480 + + Sbjct: 415 VNLKR 419 >gi|196044997|ref|ZP_03112230.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|300117326|ref|ZP_07055116.1| flagellar hook protein FlgE [Bacillus cereus SJ1] gi|196023999|gb|EDX62673.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|298725161|gb|EFI65813.1| flagellar hook protein FlgE [Bacillus cereus SJ1] Length = 437 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|196039080|ref|ZP_03106387.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] gi|196030225|gb|EDX68825.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] Length = 437 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + S + ++ + + Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|160896073|ref|YP_001561655.1| flagellar hook-associated protein FlgK [Delftia acidovorans SPH-1] gi|160361657|gb|ABX33270.1| flagellar hook-associated protein FlgK [Delftia acidovorans SPH-1] Length = 642 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 116/365 (31%), Gaps = 14/365 (3%) Query: 15 NNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFD 64 + NI N + Y R+ S V V T ++ + Sbjct: 1 MANQIALQTTGHNIANVNTAGYSRQSVAFQTSPGQNMGSGYIGNGVDVNTILRNFNDLLN 60 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + S+ + A + + I+ + +S + ++ Sbjct: 61 RQAATASAVSAADSARATSLAQMQEVFG--GGKTGLGAAITDMMNSFGDVAGAPTDPSAR 118 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + V+ E+ F +++ ++ ++ A +++ +++ + ++ +N I AS Sbjct: 119 QVVLTRMNELAARFRSASAQLDELDYSAKQQMGNDVTVVNSLAGQVATLNAQISRSIASG 178 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 +D LDQRD L++ I++ + S I ++ + ++ L K + Sbjct: 179 QTPNDLLDQRDQLVRNINKYVQTSQIPADDGSISLFVGGSQPLVLGPNSAQLTLKEATEF 238 Query: 245 VTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S ++ G S + G+I LLQ + S + +N L MA + S + Sbjct: 239 PGSGKMALYFQQPGGQNVELTPSMLGGGEIAGLLQFQGSDLTEGRNLLGRMALAIGDSLN 298 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E++ + G + + + S L+ Sbjct: 299 EQNNLGLTLSGQSGSNLFKLSMVSNGSTTGAQWTGATTPTTTVVDSSQLKASDYQIVFGS 358 Query: 363 WNVKN 367 Sbjct: 359 TAPAG 363 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%) Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G+ S K Y + + + + TL + ++ + Sbjct: 513 AINGTTSDKVTLGKATDPQYGTAYQRDAGNASSFLALRDSKLFDGSTTLSDGFSTAMAQV 572 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S+ + ++ + GVNL EE + L++ +QSY S K++ + Sbjct: 573 GTRTQSAQYAAKLSETIAKNLEADRTAVSGVNLDEEAAKLLQYQQSYQASAKMLQVAQSI 632 Query: 472 LQTLLEGV 479 ++L+ V Sbjct: 633 FDSVLQTV 640 >gi|120613059|ref|YP_972737.1| hypothetical protein Aave_4423 [Acidovorax citrulli AAC00-1] gi|120591523|gb|ABM34963.1| protein of unknown function DUF1078 domain protein [Acidovorax citrulli AAC00-1] Length = 425 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 119/473 (25%), Gaps = 50/473 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I N+ N+ + N Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIG------------- 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S+ + A+ + + + + ++ D + + + Sbjct: 49 -----SAGGTNAGIGVELSAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSHAYTR 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + Q + +V D I + + +T + Sbjct: 104 AGNFKLDSNGQLVTNTKAQVMGYALD---PITGKRTASNAAPLTFPTSKPIPAKQTTTIT 160 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + + + R+ + D + + V N++ V Sbjct: 161 AEFNLDARAPDAAGDATATPPVPATPRSTYGTSINVYDSQGVAKPVSLYFQKNGANTWDV 220 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + VV++ G K + + FQ L Sbjct: 221 YDRLDDATANPPVVATPIGQIKFDNSGKIVSPAATAPETGFQMPLTVKPT---------- 270 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + ++ + QY + Sbjct: 271 -----------------PPNPNGLADYTVNIKLDGVSQYGKAFAVSNLSQDGYTAGELTG 313 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++ Y + + +A L N W+E +S L + Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQVALASFRNTQGLASVGNN--NWVETFQSGQPVLGTPT 371 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + V+L EL ++ +++Y + + I D+++ TL+ Sbjct: 372 EGKFGGLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 424 >gi|78485812|ref|YP_391737.1| hypothetical protein Tcr_1471 [Thiomicrospira crunogena XCL-2] gi|78364098|gb|ABB42063.1| Flagellar hook protein FlgE [Thiomicrospira crunogena XCL-2] Length = 538 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 53/537 (9%), Positives = 124/537 (23%), Gaps = 73/537 (13%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----VVTQRSENKNMF 63 A + N ASQ I N+ NA Y + V S ++ Sbjct: 8 TAVSGLNAASQGLGVISNNLANAQTMGYKSSRAEFSDMFYGAQSTPGNGVRVDSITQDFT 67 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + + + F L++ + + + + Y + + + Sbjct: 68 NGTITDTGRDLDMAIDGDGFFILEDRTGKYE----NVYTRNGSFKLDKDGYVTSQEGNKV 123 Query: 124 GKTVIDNA----------------------------------EEVVQNFNTSAREVQKIR 149 +++ A V N + Q Sbjct: 124 QGYLLNPALSTERNPVFETTLSSIDLDELNKTPKSTDEMNYDINVDGEENNNVDATQTPI 183 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK--------- 200 A + + + + LS + + D D L + Sbjct: 184 AGIENSVGGDTALAGSALSNIEKLVAPETEVYGGYPDFSTNKIVYDTLGGEHRLTTNFYK 243 Query: 201 ----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI---- 252 ++ + G T + + E + T ++ Sbjct: 244 RDVVTEANSDLTYDPLTDTYTQGAAGTGNTKYTSWLAQYTMEDYDDATGQWVTSGHREAV 303 Query: 253 -FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + + L+ R+ V + + + DP Sbjct: 304 PADGTASADAGIIYELRFDTNGNLIDTREPTVAALATGANSTPTGQDTANNPLDPATWTP 363 Query: 312 ENVPGLFIADGIKDLDNKLCQ----------GISETICVNPQYRSNPSFLRDGGSVSKKF 361 + I Q+ + + + Sbjct: 364 TGNQPNMEWVVDSPITGANDPLGNPADALGVSIDVDFTKMTQFAGSYNLRGVTQNGYAIG 423 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + Y + + +A N L + + E S + + Sbjct: 424 DLVGVYTGKDGVIEARYSNGRSVPVAQLGMANFNDKNALEKLGGQ--SYAESFASGAVQI 481 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I+ V+ EL +I+ +++Y S ++I + + QT+L+ Sbjct: 482 GTSERNGYGSINAGALEYSNVDTAGELVHMIQTQRTYQASAQVIQTSQTLTQTILQL 538 >gi|326791535|ref|YP_004309356.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326542299|gb|ADZ84158.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 432 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 122/478 (25%), Gaps = 46/478 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + Y + Sbjct: 1 MMRSMFSAVSGLRVHQTRMDVIGNNIANVNTIGYKSQRVTFNDV---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F + L + S+A + + + T ++ D+ N I Sbjct: 45 FSQTLSSASAASDETGRGGRNPMQVGLGVNVSSIDMLMTQGAAQRTDNPFDLMINGEGFI 104 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + I +++ + L ++ +V Sbjct: 105 VVGDTNGTYFTRAGALRADVDGNLIIANGM--KVKGWTAQLNEETNKYEIVKGEAGSINL 162 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + LQ + ST N + +L T+ + S Sbjct: 163 ADPNFVSSKPKVTDKLQLSGNLNSTSTKEETNFRFYDSLGNYYSLATTLTPSTDKVDGYS 222 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + +G ++ + ++ G + Sbjct: 223 VWEMKLGDIKDANGNKLNGTL----------------------SPDTAVKLYFDTNGKLA 260 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + N + + D + + I+ QY S + + + Sbjct: 261 SVGAVPGATGNATSIDLEIENTDKTSTFAEKITIDFSSMTQYASASTIDPKTINGNAAGK 320 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + G + Y + + VA + L + N + S D Sbjct: 321 MIGYEIGGDGVITASYDNGDMRILAQVVVAKFDNPEGLEKVGDNL--YKVTPNSGEFD-- 376 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L E + +I ++ + ++++I +D+MLQ L + Sbjct: 377 --GIGTVGTFNTGVLEMSNVDLSSEFTDMIVTQRGFQANSRIISVSDEMLQELTNLKR 432 >gi|260772280|ref|ZP_05881196.1| flagellar hook-associated protein FlgK [Vibrio metschnikovii CIP 69.14] gi|260611419|gb|EEX36622.1| flagellar hook-associated protein FlgK [Vibrio metschnikovii CIP 69.14] Length = 641 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 53/399 (13%), Positives = 130/399 (32%), Gaps = 17/399 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNLGAQSVLTAQRQLNTTGHNIANVNTEGYSRQSVIQGTNAPRQLGGQTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNLATTNHAFNSDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ + K V++ A V QN N V++ +K +++ I + + E+ + Sbjct: 122 LADTPNDVGVRKVVLEKANLVTQNLNDFHETVRRQFDITNKGLDVGIERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ G TL Sbjct: 182 QRLMMRVP---GPHNDLMDEHEKLVAELSQYTKVTVTPRTSAEGFNIHIGSGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + ++G + + GK+ AL ++RD +P +++ Sbjct: 239 ASQL-KMIDGYPDVKQRRLAVVEGNTLK-SISEKEIGGKMAALFEMRDQHIPGLLDEIGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ +E + G + + N + + + + Sbjct: 297 LSISFAHQVNELQSQGLDLRGNVGGLLFSDVNSEVNARSRIATASDSNADIRVYIDDLSQ 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 G +A PD N D + Sbjct: 357 LKGGEFALSYTGSHYVATLPDGKQQILALNQGNLYLDGL 395 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/406 (11%), Positives = 107/406 (26%), Gaps = 6/406 (1%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 LK + D S+ L + + ++ Sbjct: 235 SGTEASQLKMIDGYPDVKQRRLAVVEGNTLKSISEKEIGGKMAALFEMRDQHIPGLLDEI 294 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 + + + N+ L + + A+ D++ + L Sbjct: 295 GRLSISFAHQVNELQSQGLDLRGNVGGLLFSDVNSEVNARSRIATASDSNADIRVYIDDL 354 Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR---DINFEKMNSYTVTSESNPIFID 255 ++ + ++ + L D ++N+ E + Sbjct: 355 SQLKGGEFALSYTGSHYVATLPDGKQQILALNQGNLYLDGLRIQVNTPPEIGERVIVRPT 414 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK---DPIAGNSE 312 + Q + KI A + + Q I F + AG+ E Sbjct: 415 RDGAAQIQMATNDPTKIAAQSYQASTSFAQGRAQFQIDQVGDIKEFEAYLVPNTGAGDHE 474 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + +G ++ S ++++ + N K A Sbjct: 475 MQIRVVDKNGQLLATQPYLFNDDQSKLPIVIPAQQTSGQPTVFTLTRGAIENDKFTANLN 534 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + T++ N S S L +++ Sbjct: 535 PAEGDNGNLRKMIHLQTTKKMNDNESTIIGLYHNLNTDFGLKLSTSTRLADVARLEKEAA 594 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + GVNL EE + ++K + +Y S++++ + T+L+ Sbjct: 595 ESRIGSVSGVNLDEEAANMMKFQHAYMASSRIMQAANDTFNTILQL 640 >gi|323498414|ref|ZP_08103410.1| flagellar hook-associated protein FlgK [Vibrio sinaloensis DSM 21326] gi|323316487|gb|EGA69502.1| flagellar hook-associated protein FlgK [Vibrio sinaloensis DSM 21326] Length = 624 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 62/448 (13%), Positives = 151/448 (33%), Gaps = 22/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + A +Q + NI NA+ + Y R+ + + V V Sbjct: 3 SDLLSLGSQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNMPRQFGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + ++ + M + +++ D+++S Sbjct: 63 KVRRSWDQFAVNELNMSTTNYAHKLDDEANLEMLSNMLSSVSSKK-IPENLNEWFDAVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ + + QN N +++ +K+++L + + + E+ + Sbjct: 122 LADSPNDVGARKVVLEKSTLITQNLNDFHETIRRQSDVTNKKLDLGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVNELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y E I+G + + S GK+ A+L +RD +P +QL + Sbjct: 239 ASKL-TMIGGYPDVHERRLAMIEGKGIKA-ITSKDIDGKLGAMLTMRDEKIPQLMDQLGK 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G I D + + ++ + Sbjct: 297 MAAAFSYDVNKLQSQGLDLRGNIGGLIF-----TDVNSDIIAQSRVVTSSDSTADLAVYI 351 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + S ++++ G + + + D ++ + + E L Sbjct: 352 EDTSQLVAGEYSLQYAGGDYYITRPNGEQSIVPVVDDAISLDGIRIDIREDLAAGERVLI 411 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + +S +HI+ Sbjct: 412 RPTRNSAAQMQMETNDPSHIAAQSYEAS 439 Score = 94.3 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 101/340 (29%), Gaps = 3/340 (0%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ ++ K ++ + S+ + I + ++ R V Sbjct: 284 DEKIPQLMDQLGKMAAAFSYDVNKLQSQGLDLRGNIGGLIFTDVNSDIIAQSRVVTSSDS 343 Query: 202 SEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + + + T + + + G + + + ++ + I I + Sbjct: 344 TADLAVYIEDTSQLVAGEYSLQYAGGDYYITRPNGEQSIVPVVDDAISLDGIRIDIREDL 403 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + + P A +Q+ + Q E + ++ + Sbjct: 404 AAGERVLIRPTRNSAAQMQMETNDPSHIAAQSYEASTTFAQGSAKFSIDTAGELREFEVV 463 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 ++ K +G + ++ L N K A Sbjct: 464 VSPDGKQFAVTDTKGRILMQPQTYPPSGPVTVGGTTFELTGGALPNDKFTANLVPSEGDN 523 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + I + T+L+ N + S + L S++ E ++ Sbjct: 524 GNLLKMQNIQTEKKLNDGESTVLDIYHNLNTDVGLQMSTASRLTDVSRLEKESAQERVAS 583 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 584 ISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623 >gi|228914332|ref|ZP_04077947.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845326|gb|EEM90362.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 437 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + S + ++ + + Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGVG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|297580837|ref|ZP_06942762.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC385] gi|297534663|gb|EFH73499.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC385] Length = 624 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQQRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQQRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|319427083|gb|ADV55157.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens 200] Length = 641 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 127/439 (28%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I ++N + L Sbjct: 182 LELMKSP---NQDAILLDKQDALVQELSQYAQVNVIPQDNGVKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 K + I VS++ + G++ AL + RD + ++LD++A Sbjct: 239 TMDTKTGNPFPNELQLMSSIGSQSVSADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L + SN + Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + + Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSINIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I+ Sbjct: 408 ASGDRFAIRPTAGAANGIT 426 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 103/364 (28%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + NFN ++ + I +I++ L + ++ Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T + L + + T +G+TL IN Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIN 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I + ++ Sbjct: 402 IKAGAMASGDRFAIRPTA-GAANGITVEMTDPKGIAAASPKI---TADAANSGNTQVKLT 457 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 I + S + SE L + G S S +F Sbjct: 458 QITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEV 517 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 S N + ++ + + TL + N+ + Sbjct: 518 DSTAAASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNEGKSTLADVFENTKIDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 TSVR 641 >gi|268589982|ref|ZP_06124203.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131] gi|291314700|gb|EFE55153.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131] Length = 419 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 120/476 (25%), Gaps = 62/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS SI NI N+ + T V + +N Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + A F +++ ++ + N + Sbjct: 62 KDGPITRTDRATDVAISGNGFFRVQDQ------NGDTYYSRDGQFLRDKSGNLVNNQGMV 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + E+ V + + + SEL + + + Sbjct: 116 VTGYPASVDEK---------GNVTIQSGGVPAGLNIPTDMMDAKASELAKLTINLNSEDK 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K D + D S + N +++ VY V Sbjct: 167 IKDKPFDVNNPDDSATYNFSTTMTAYDSQGNTHEISVYFVKSADNEWKVYAK-------- 218 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 D V N D V++ + Sbjct: 219 ----------------------------------DANDKVATQLINTEDVDDTVVVHNKL 244 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D S F + + Q S S + Sbjct: 245 IFDGNGRLSAPTDATFDFNYKGLNGANDGVLRVDLNKTRQQKVSESSVSAIDVNGYPAGE 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + +Y + + ++ L+ N W N S + Sbjct: 305 YTTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNV--WASSNTSGNPMDG 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ + V++ +EL +I ++++Y + + I D+MLQTL+ Sbjct: 363 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 418 >gi|229172400|ref|ZP_04299959.1| Flagellar hook protein FlgE [Bacillus cereus MM3] gi|228610871|gb|EEK68134.1| Flagellar hook protein FlgE [Bacillus cereus MM3] Length = 441 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 123/478 (25%), Gaps = 37/478 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + + NI NA Y ++ + N TV + + + Sbjct: 1 MIKALYTSITGMSATQNALSVTSNNIANAQTAGYKKQKAIFDDLLYNNTVGS--RGDGSY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + + + L + + Sbjct: 59 AGTNPKSIGNGLKFSGTATDFSD-GSITLTGEKMETAIEGNGLFLVGDRNGGNVEYTRKG 117 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 DN V+ + D + L + V D Sbjct: 118 SFGVSADNFITATGGQYVLGYGVKPGTQEVDFSSQPSAIKLPVGTAIGGSVTDKATLGGN 177 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + + ++I I +N V + T F N Sbjct: 178 LSRNQSDLSTDFTIYDDEGNKITLRMDIKQNTKKETVGDKEIDT-PIQGEYTYTFSMRND 236 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 E P+ + + GK++ L + Sbjct: 237 SKNEKEFKPVLGENDAPITKNMKFDKAGKLERLDE------------------------- 271 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + I G Q + + Y + + + + Sbjct: 272 ------DVQRDPNTKEITQGGTIKIPFANQNLELNLGGLTNYPTGKTITATDVAGRPAAI 325 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ S + Sbjct: 326 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKSGNG--NYIATPSSGIPAIG 383 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 384 VAGENGAGNVRGGAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 441 >gi|197104253|ref|YP_002129630.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] gi|196477673|gb|ACG77201.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] Length = 452 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 50/482 (10%), Positives = 115/482 (23%), Gaps = 38/482 (7%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQRSENK 60 + S A+I NI N + Y R + +S + Sbjct: 1 MLAGVSGLVANSSALAAISDNIANVNTVAYKRNQVNFANVVTAQAVKGKYSAGGVQSVTR 60 Query: 61 NMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + A +S F + + + Y N Sbjct: 61 QFVSQQGLIQASNSTTDLAISGDGFFVVANKGLGLTGADPRSFTRSGAFAVDSDGYMVND 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + L + N + + + + + L VN Sbjct: 121 AGLYLQGWPVQADGTFNVNPSDLS-----LMQSINVKNLGSAVAPTTELGVTANVNKDGP 175 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + G+ ++V + + +D Sbjct: 176 VSASEATYDGSVAATSMAEYADSAGATGVKPDFVIEMNVVDSAGGSRKIALAMLKDDVAN 235 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 ++ ++ + + + + L ++ Sbjct: 236 AWHAEIYAVPASSVDLAAGTPPGQLARGTINFNADGTIN-----LGTTTAALQSLSLDAS 290 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + Q I+ + QY S + + + Sbjct: 291 AGATPRWATGLGLA------------------AQDINLALDKLSQYSSTSTVTAIQSNGA 332 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ + Y +S + VA L + N + + Sbjct: 333 GVGNVIAIDVDPEGVVSAVYDNSQIRKIAKIGVATFPNPDALAAVSGN--AYRPTIPAGE 390 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + IS S V+L E + LI +++Y+ S+K+I D+ML+ L+ Sbjct: 391 MTVKEAGIGGAGKISPSSLEASTVDLSAEFTGLIATQKAYSASSKIITTADQMLEELINI 450 Query: 479 VK 480 + Sbjct: 451 KR 452 >gi|39936992|ref|NP_949268.1| flagellar hook-associated protein [Rhodopseudomonas palustris CGA009] gi|39650849|emb|CAE29372.1| possible flagellar hook-associated protein 1 FlgK [Rhodopseudomonas palustris CGA009] Length = 623 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 73/458 (15%), Positives = 152/458 (33%), Gaps = 22/458 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A + + N+ NA+ YVR+ + + +V VV Sbjct: 1 MSLGDALAIAMAGLRVNQATMSLVSSNVANAETPGYVRKTVNQSAVNAGETGTSVKVVGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L +S L F + + D + + + + L +L++ + Sbjct: 61 DRQLDDYILAQLRTETSGGAYASLRSDFLKQLQGLFGDPNSTGTLENSYNGLTTALQALA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + V++ A+ + N N+++ +Q +RA + I ++ + ++ +N Sbjct: 121 TSPDSTSARIAVLNAAQAISSNLNSTSNGIQTLRAGCETGIADAVTTANNLMQQIANINT 180 Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ LDQRD + ++S+++ I + N + V+T G L Sbjct: 181 HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIRVVTNGANQVTVFTGSGVQLVGME 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281 + F + + T+ NP SS+ S++ GK+ A +++RD Sbjct: 241 AAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANGSSSDLTSSLKSGKLAAYVELRDK 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + Q QLD+ A L + S+K + + + IS T + Sbjct: 301 TLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAGFNLDLSSMKTGNTVNISYTDTLT 360 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + +R N + + A + N+ Sbjct: 361 GAQHT-VTVVRVDDPSVLPLPQNATADPNDYAVGIDFSGLSGSVVSQLNAALNSRNLQFS 419 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 A N + N S ++ ++ Sbjct: 420 GTAPNIT--VLNNAGFSTITAASVTSTETSLTGGTASV 455 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 54/470 (11%), Positives = 127/470 (27%), Gaps = 25/470 (5%) Query: 23 SIVRN----IENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78 + N I N + +P T + S + R Sbjct: 166 TTANNLMQQIANINT--------HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIR 217 Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVV 135 ++ + + + + N + I I Sbjct: 218 VVTNGANQVTVFTGSGVQLVGMEAAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANG 277 Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + ++ A + + + + L + + + A Q Sbjct: 278 SSSDLTSSLKSGKLAAYVELRDKTLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAG 337 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 L S G + + + + T + P + + + + I Sbjct: 338 FNLDLSSMKTGNTVNISYTDTLTGAQHTVTVVRVDDPSVLPLPQNATADPNDYAVGIDFS 397 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 G+ S ++ S L+ I + S + Sbjct: 398 GLSGSVVSQLNAALNS----RNLQFSGTAPNITVLNNAGFSTITAASVTSTETSLTGGTA 453 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + + G + Q S + L S + + AG Sbjct: 454 SVPLFNDNGAAYTGAINGYGSQMTGYAQRISVNADLIKDNSRLVVYSTSPLTAAGDTTRP 513 Query: 376 NHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + N + + TLL Y + + N + + L VV Sbjct: 514 DFLVKQLNTSKYLYSAKTGIGSDAAPYKGTLLSYLQQFVSQQGSNAAAAQQLSEGQNVVL 573 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 N + + +S + GVN+ EE++ L+ ++ +Y + +++ ++M Q+L++ + Sbjct: 574 NTLQQKFSTSSGVNMDEEMAHLLSLQNAYAANARVMSTINQMYQSLMQAI 623 >gi|332296509|ref|YP_004438432.1| flagellar hook-associated protein FlgK [Thermodesulfobium narugense DSM 14796] gi|332179612|gb|AEE15301.1| flagellar hook-associated protein FlgK [Thermodesulfobium narugense DSM 14796] Length = 936 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 60/448 (13%), Positives = 142/448 (31%), Gaps = 18/448 (4%) Query: 1 MSLLAVF---NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TIS 46 MS ++ F AQ+ + N+ NA+ +Y R+ + Sbjct: 1 MSTISSFLGLQIAQSALASNQLAMDVTGHNVANANTASYSRQSPVFVQNTPLSYPTSGEV 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + T + + D L SS + + A + N + Sbjct: 61 GTGVNISTIKRYRDSFIDAQLRNASSLQSYYDTSSTLLQQVQTALA-EPSNIGLQTSLQN 119 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + +S + N S+ + VI +++ ++ ++ + + +R + +N+ Sbjct: 120 FFSAFQSLANNPSDLSTRQLVISDSQNLIFSYQSLYNGLIDLRNQLSSSLSTLATNVNTI 179 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + +N I AS +D LDQRD L+ ++++++ +S + +++V + Sbjct: 180 AQNIYTLNKQIAVVNASGQQPNDLLDQRDNLVDQLAKLVNVSYTTDQSGNLLVSIGGHSL 239 Query: 227 LFETVPRDINF--EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + + N ++ V S + V G+I A L +RD + Sbjct: 240 VSTAGYDSLTVIPDTSNPSDPNDPTSQPMSKLVWSSDGMNANVSGGQIGATLDMRDINLV 299 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + NQL+ A L+ + + + + + + Sbjct: 300 NYLNQLNSQATSLMSAVNYLNSQGYPLNSTYLVSDISPTLNFFTGNSITTMGIDSRIINN 359 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + G + + + + + PV +++ L A Sbjct: 360 PA-LIGASSTGGSGDGEIAQAIANLQNEPIYGFPVNQTSVSGSVLPVQYLSSTGYNLSSA 418 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 +G D + + + + Sbjct: 419 NIDVGSSGIYNLDFSNATTAQRTLTIQL 446 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/430 (8%), Positives = 102/430 (23%), Gaps = 14/430 (3%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 S N + D +S++ + L D ++ + Sbjct: 518 ADAANYNSVNDLINDINTQIAASSLSGHVQAYNDGGLLGFKVIDSSTSSLSVSGDTSGLL 577 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + + + + + I+ K S L+ Sbjct: 578 GFSSVGVQNANSTPLIQAYQDGNLLAFKLVDNYQGSTPIQDANFKGSSFIASGLQALAFP 637 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTLF 228 + + + + + I + N+ T+ G++ Sbjct: 638 TAIGSALTFPLNIATTSNATLNFTLNNASSPTTISIPTGTYTNINSLVSAWNTALGSSSL 697 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + ++ + + S +A + + + Sbjct: 698 KGQVYAESINGNLAFYTPNLGISSLTVTGDGTQGFDSTGITNSAQADSNLYNFAMYGATA 757 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + + + L + P Y Sbjct: 758 NGVDPRSRTLTVMLTNNLTGQVTTSNIYLPSGNYSNASAIASKLNSIYGSSGMPLYG--- 814 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + ++L N + + + T+ + Sbjct: 815 ----------ITVGTDGESLTFVTSNPNQSIRVLGEYSSALGFKNYDGSFTVANAYISMT 864 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + V + + GV++ EE++ LI+ + +Y+ S ++I Sbjct: 865 SNIGTQGQQATTNYTNQSNVVTLLQNQQQSVQGVSMDEEMTNLIQYQTAYSASARVINAI 924 Query: 469 DKMLQTLLEG 478 + ML L+ Sbjct: 925 NSMLDKLINS 934 >gi|160878464|ref|YP_001557432.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] gi|160427130|gb|ABX40693.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] Length = 613 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 107/306 (34%), Gaps = 25/306 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S + + + + NI N + + + R+ Sbjct: 3 STFFGLSIGNSGLYASQAGLNTTAHNIANIETEGFSRQVAKQQAGTALRVNSSYGMVGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + +D +++ G + + E ++ + + Sbjct: 63 VDIKGVTQIRDSYYDLKYMKNNTMYGAYSTKEYYLTSIENYF-NEVKLEGFLTNFDNMYN 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 SL+ SK + + V + A+ N+ + + +++ + + EI+ ++ + + Sbjct: 122 SLQELSKQPEDLTVRTQVTNMAQSTCDYVNSLSTSLSRLQEECNFEIKNQVERVNSLAQQ 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-----DG 224 + +V I + A+D DQR +++ ++S +S R D V TS DG Sbjct: 182 IAIVTKQINTIEVNGGTANDLRDQRALMVDELSGFATVSVNERIVGDNVGVTSYTVKLDG 241 Query: 225 TTLFETVPRDINF-----EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 TL + + K+N T N + +G V N + G +KAL+Q+R Sbjct: 242 QTLVDNYEANQLKVVPRDTKVNQLDATGLFNVCWSNGQPVDLNSPTM--GGTLKALIQVR 299 Query: 280 DSVVPI 285 D Sbjct: 300 DGNNKE 305 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/446 (11%), Positives = 125/446 (28%), Gaps = 31/446 (6%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL---S 119 + +S Q ++ E+ + + + S N Sbjct: 168 IKNQVERVNSLAQQIAIVTKQINTIEVNGGTANDLRDQRALMVDELSGFATVSVNERIVG 227 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 +++ + + N A +++ + D S V+ Sbjct: 228 DNVGVTSYTVKLDGQTLVDNYEANQLKVVPRDTKVNQLDATGLFNVCWSNGQPVDLNSPT 287 Query: 180 KTASKHDAHDFLDQRDVLLQK-----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + D + + + I+ N N++ + R+ Sbjct: 288 MGGTLKALIQVRDGNNKEGYQGKAIASAGDTTITVTSTNKNNVEDLNIASNGIITIGNRE 347 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ I+ + I Q+ +P + QL++ A Sbjct: 348 YHYNGFAVTKDEDTGEFIYEFSLDEPVKVDVNEETAHIG--KQVDYKGIPYYMAQLNKFA 405 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS------------------- 335 R +F++ + GL +G+ + K Sbjct: 406 RTYAKAFNDVHKSGQDLNGDQGLDFFNGVDVVTGKNFIFDKSPSDEGNGYLFTSKTGAYA 465 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAG 393 P + S D V+K + K LA + N ++ N Sbjct: 466 GDYADEPNFASYYLLTADTFGVTKAVYSDPKKLATASSIENGVANADNVQKLLALKDDVR 525 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + ++ + + + + + + + + + + GV+ +EE L++ Sbjct: 526 MFGQGKPAQFFQTLVAEIGIDAKQASNFAENQMNILSAVQNQRLSISGVDQEEEAMNLVR 585 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +++YN+S K+I D++ L+ + Sbjct: 586 YQKAYNLSAKVISIMDQIYDRLINYM 611 >gi|182418344|ref|ZP_02949639.1| flagellar hook-associated protein FlgK [Clostridium butyricum 5521] gi|237666652|ref|ZP_04526637.1| flagellar hook-associated protein FlgK [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377726|gb|EDT75270.1| flagellar hook-associated protein FlgK [Clostridium butyricum 5521] gi|237657851|gb|EEP55406.1| flagellar hook-associated protein FlgK [Clostridium butyricum E4 str. BoNT E BL5262] Length = 610 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 128/412 (31%), Gaps = 26/412 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L F A+ + + N+ N+ Y R+ + + Sbjct: 3 GLFDTFTVAKRGLSVQQGNINTTSHNLANSQTAGYSRQRAVVETTRPFGGLSKFDGVSYG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + T + D + ++ G + E + ++ + + Sbjct: 63 QIGTGAQITTIQRIRNEFIDYQVRTENTNTGTLGSKYQYLYQVEDIL-NETTSTGIQGAL 121 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S+ D+ + SK ++ + AE + N+ +++ + DA KE+ ++ + Sbjct: 122 SEFYDAFQELSKAPEKESNRTVALKKAEALATALNSRYNQLESKKEDAQKELGNYVTEVN 181 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ +N I ++ + +D LD RD L+ ++S G+ N + + Sbjct: 182 DILDKINELNKQISRVSSVGMNPNDLLDSRDYLIDQLSSKFGVKIDKDKYNTIDLS---- 237 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + E V +++ ++ ++ S F++ ++ V + R+ ++ Sbjct: 238 --VTENVNKNLGNLVNSNPNDSNYSRFSFVENAELNGAGDLVVTYSVLGDKSNQRELIIT 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-- 342 + +L+ + + L+ GN + + + Sbjct: 296 GDKAKLENIKKSLLEDRVLVANSEGNLGTRDATGKFIEYDSGKTINSDEFEKNVAIFNKE 355 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + V + L + + ++ + I Sbjct: 356 DCGISKGEIAGNQEVQDTIQGYMDELDKFAASFAYAVNAIQTGSTKSGESNI 407 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/409 (11%), Positives = 106/409 (25%), Gaps = 2/409 (0%) Query: 72 SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + + +++ NL + Sbjct: 203 NPNDLLDSRDYLIDQLSSKFGVKIDKDKYNTIDLSVTENVNKNLGNLVNSNPNDSNYSRF 262 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 V A ++ + + + ++L + ++ ++ L Sbjct: 263 SFVENAELNGAGDLVVTYSVLGDKSNQRELIITGDKAKLENIKKSLLEDRVLVANSEGNL 322 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 RD + I G + V + N E ++ + Sbjct: 323 GTRDATGKFIEYDSGKTINSDEFEKNVAIFNKEDCGISKGEIAGNQEVQDTIQGYMDELD 382 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 F + N I D+ L + S + Sbjct: 383 KFAASFAYAVNAIQTGSTKS--GESNILDAKGNKINAALLFVNSDHTTSDKGITAKNISI 440 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + ++ + + + + G +S + + G Sbjct: 441 NSAIEKDLSLLNCGEHHVDDYSGEKDGSRVLAIAQLKNLKINIGGLSIDDIESRDTFFGV 500 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 N F + T L +Y ++I L N S + + + Sbjct: 501 GAAKNPSSIDFEAGSTINLANKDGTGSKLSDYYASTISKLASNVSKAKSDLSTQNTLLAN 560 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + GV+L EE++ LI+ + SY + K+I D++L ++ G+K Sbjct: 561 LENQRLSESGVSLDEEMADLIQFQHSYQANAKMINTVDELLDVVINGLK 609 >gi|306817677|ref|ZP_07451419.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35239] gi|304649491|gb|EFM46774.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35239] Length = 916 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 16/241 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + +R D L + + + S E S D+ S ++ + + Sbjct: 63 GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + + T I NA +V T + + + E++ +++L Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + +N+ I+ TA + + +D+RD L ISE+ G + + + + Sbjct: 182 MDSVLALNERIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241 Query: 227 L 227 + Sbjct: 242 V 242 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + + + TL E+ ++ + + + S + D Sbjct: 798 LGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQDSATSTLNEWGKSVV-DVGVHASGARD 856 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + + V++ EE+ LI+ + +Y + ++ + ML+TL+ + Sbjct: 857 SYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIRGQHAYAGAARITSTVNSMLETLINLGR 916 >gi|317152826|ref|YP_004120874.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316943077|gb|ADU62128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 515 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 48/522 (9%), Positives = 115/522 (22%), Gaps = 49/522 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPEN 49 MS+ + SQ + + N+ N+ Y + Sbjct: 1 MSITGSMYTGISGLKAQSQATSVVSNNLANSTTTAYKSSSITFEDVFYSTVYAGGSVGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT S N + + +SA F + + N+ Sbjct: 61 GNGVTVASVNTDYSQGSYESTNSATDVAINGNGFYVVID-----PDTGNTYYTRAGNFTF 115 Query: 110 SLESYSKNLSEDILGKTVIDNA--------------EEVVQNFNTSAREVQKIRADADKE 155 + E Y ++ + + +++ + + + + D Sbjct: 116 NTEGYLEDAHGNKVQGWAMNDGSIEGTLTDIVIDQSQSPPNATSEVGFSLNLDSTETDHT 175 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 F + + A+ + D+ + T Sbjct: 176 TSATNPYAALFEAYDGTADPALGDSAYAYSTTISVFDENGSAHDVTVYFDPVETDDGTIV 235 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--- 272 V T +G+ + + + + G +VS + Sbjct: 236 WEYVVTCNGSEDNRDFNGTEMNATSGAGMLMTGTVTFSSSGDIVSMTAFTLSDTPTNLTD 295 Query: 273 --------------KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + ++Q + + + + + Sbjct: 296 PLAAENWVLADFDADGFPVFSANFTGADEDQPIALNLGMANTNTTGTGWDTSGGISSLAD 355 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 D + + + + L Y Sbjct: 356 FTPTTAVGDLPAFNNGVVQTTTTTSTSLSSATYSLSQDGYAPGVLINVAIDENGVLSGEY 415 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + +A L N S + F I+ + Sbjct: 416 TNGQTQELYTIALANFTNTQGLSSQGSNLYS--ATTESGQAFIGTPGSAGFGTIASNSLE 473 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ EL+ LI ++ +Y + K+I D +L + + Sbjct: 474 QSNVDTATELTKLIILQAAYQANAKVITTADTLLSAAISMKR 515 >gi|307945687|ref|ZP_07661023.1| flagellar hook-associated protein FlgK [Roseibium sp. TrichSKD4] gi|307771560|gb|EFO30785.1| flagellar hook-associated protein FlgK [Roseibium sp. TrichSKD4] Length = 617 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 65/452 (14%), Positives = 143/452 (31%), Gaps = 12/452 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---TTISPENVTV---VT 54 M L + N A +Q +NI N D Y ++ V+ Sbjct: 1 MGLTSALNNALFGVTFNQRQLDVTSQNIANKDTVGYTKKQVEANVFYDGNGGVSGLLAAE 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 N + G + + + + + S S+ SL S Sbjct: 61 ITRVVNNEIQSSYLDSLADTGYGAKIAQYTSDLDAIFGTISDGTSVQALASRFTTSLSSL 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + S TV+ +AE + TS ++Q +R D+E+ ++ ++ LS L V Sbjct: 121 INDPSSRTAQTTVVADAEALAYEIRTSYEQIQDLRQRTDRELAAQVEDINALLSSLADVE 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-TLFETVPR 233 I+ + LDQRD L+ +S+ + ++ + ++ + + T +G L + Sbjct: 181 TDIRESNLADSSTAQLLDQRDRYLEDLSKYLDVNIKINVDDSLKITTRNGELLLSDGQAS 240 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + F + + PI + + + + G I L ++RD V Q+QLD+ Sbjct: 241 KLTFTETPILKPGASGQPIMVRTPGGTEYDLVESSASGTIVGLAELRDEVFIEAQDQLDQ 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + + + + L + + + + Sbjct: 301 IAAEMTLALNARTVEGTEVTVGSEEGETLDLSSLKPGE--KVEVSYTDASGQAQTVTLIA 358 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + V ++ L + + L+ Sbjct: 359 VDDPAFLPLEDDATPRTDDTVFGLDISSGTAATIVGYAVTALSGTG--LAASNDGSDNLQ 416 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + + ++ S + +G+N+ Sbjct: 417 VLGDSGASIELDGLTLKGSVTGSSNEGLGLNI 448 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/335 (9%), Positives = 93/335 (27%) Query: 144 EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 + ++R + E + ++ + ++ + + + LD + + E Sbjct: 282 GLAELRDEVFIEAQDQLDQIAAEMTLALNARTVEGTEVTVGSEEGETLDLSSLKPGEKVE 341 Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 + + ++ D L + S I G V++ Sbjct: 342 VSYTDASGQAQTVTLIAVDDPAFLPLEDDATPRTDDTVFGLDISSGTAATIVGYAVTALS 401 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G+ + + + + S + + + Sbjct: 402 GTGLAASNDGSDNLQVLGDSGASIELDGLTLKGSVTGSSNEGLGLNIFTDNRDGEVNFTD 461 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + G + I VN +S S L + + N A + Sbjct: 462 YLENGGQRTGYAIAIDVNSALKSESSLLVFHTTTPSQNSENDPARAEFMLDALTKSTEVY 521 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +++ + + + D+ + + + Y + V+ Sbjct: 522 NADTGIGTKSSPYEGSVMNFINQVVAYQGNQAEDAQTYSASKSALTENFAIRYEESYAVD 581 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L EE++ L+ ++ +Y + +++ +++ LL Sbjct: 582 LDEEMAQLVNLQNAYAANARVMQAVNELFDRLLGA 616 >gi|220917665|ref|YP_002492969.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955519|gb|ACL65903.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 428 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 44/486 (9%), Positives = 101/486 (20%), Gaps = 64/486 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MSLL + +S + + + NI NA+ + + + Sbjct: 1 MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGL 60 Query: 60 -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114 + A+ L + + + Y Sbjct: 61 GSRLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 NL + D + + + + A + Sbjct: 121 LVNLEGLRVQGFPADPSGALAGLPDDLLVGTASAQPRATTRL---TLKANLQADAAVPTA 177 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + D L + + D Sbjct: 178 AWDPANPGATSNFSTTMTVYDALGAGHAVQVYFRKTGDGAWDWH---------------- 221 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + T + + + A G + S P Q + Sbjct: 222 -------ALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFTPAGQAAPQPLD 274 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S + Q+ + + G Sbjct: 275 FSFGDATSAGGTG------------------------------LAGVTQFSATSASTFIG 304 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + + + VAG L N + + Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + V+L E+ LI ++++ ++K I D++L Sbjct: 363 GSGQPVVGAAGSGGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422 Query: 475 LLEGVK 480 L+ + Sbjct: 423 LIAMKR 428 >gi|303326311|ref|ZP_07356754.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] gi|302864227|gb|EFL87158.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] Length = 503 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/505 (8%), Positives = 110/505 (21%), Gaps = 29/505 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 + + SQ N+ N Y +++T+ + Sbjct: 1 MNSALYIGATGMKGLSQGMQVTTNNLANVSTIGYKQQNTLFSDMLSTSQGGTGDWWNAQE 60 Query: 54 ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 Q + + A+ + + N Sbjct: 61 NSRVALGQTGKGVQVDAVRTIFQQGALEATNTVTDMAINGKGFFQVSDGANLYYTRAGDF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 R E + + L + + + A + ++L ++ Sbjct: 121 RPDNEGVWRTPTGLALNGYQYNTDGSLGGLQEVKIDRFGTMPAKSTARVDLTLNLNSNQN 180 Query: 168 SELTVVNDAI-------KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N Q L + ++ D Sbjct: 181 KTEDADNPYFGLLGLYNAAGKPPLSSDSYAYSQAMTLYDADGKARTVTAYFDGTPDSTAG 240 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQ 277 + + N + + G + ++ Sbjct: 241 SMIEFVIAAGAAAGKTDADGNPVQPSEGDGLLMSGVLQFDASGRLTGMSAFTPSVEGSKN 300 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + D + L ++ A + D G Sbjct: 301 LADWQPAQLEGGLPQLNLDGAAMTVNFGISAAGGWQNAPASATEVGTDQSKLPSMGADAV 360 Query: 338 ICV--NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 Y S+ + + + ++ Y + +N PV Sbjct: 361 RAEGATTAYNSSSPTGAYKQDGYAEGTLSTIGINPDGTVVGRYSNGQGQNLWQIPVCRFT 420 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + L N + ++ + + ++ V++ E+ +I + Sbjct: 421 SEDGLRREGSNLFS--ATEEAGQMEMGVAGTENYGTVNAYNVENSNVDMATEMVNMIITQ 478 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++K++ D+MLQ +E + Sbjct: 479 RGFQSNSKVVTTADQMLQKAMELKR 503 >gi|196033295|ref|ZP_03100707.1| putative flagellar hook protein FlgE [Bacillus cereus W] gi|195993729|gb|EDX57685.1| putative flagellar hook protein FlgE [Bacillus cereus W] Length = 437 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 128/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNVVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + S + ++ + + Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + + TL + + E ++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V + V V ++ + I+ + + + N V + Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNSGNLKQTDEPVQKDPVT 276 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + G++ + Y + + + + Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|148976400|ref|ZP_01813106.1| flagellar hook-associated protein K [Vibrionales bacterium SWAT-3] gi|145964223|gb|EDK29479.1| flagellar hook-associated protein K [Vibrionales bacterium SWAT-3] Length = 626 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 59/401 (14%), Positives = 133/401 (33%), Gaps = 19/401 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53 + N A +Q + NI NA+ + Y R+ + V V Sbjct: 3 SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGVNDPRQYGGQTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ ++ + Q + M + +++ DS+++ Sbjct: 63 NVRRSWDQFAVNELNLSTTNAANKGDTQGNLDMLSNMLSSVASKK-IPENLNEWFDSVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K VI+ A + + N V++ +K++++ I + + E+ V Sbjct: 122 LADTPNDVGARKVVIEKAGLLTKTLNEFHETVRQQSDSTNKKLDMGIERVNQLAIEIRDV 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D DQ + L+ ++S ++ R+N V+ +G TL Sbjct: 182 QRLMMRTP---GPHNDLRDQHEKLINELSGYTKVTVTPRSNAEGFNVHIGNGHTLVSGSE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + ++G + S+ GKI A+L +RD +P ++L Sbjct: 239 ASQL-KMVDGLPDAHQRRLAIVEGKSLKP-ITSSDIDGKIGAMLDMRDEHIPAIMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD--LDNKLCQGISETICVNPQYRSNPSF 350 +A + + G + + + ++ + + S Sbjct: 297 LATAFSYKVNALQEQGLDLNGNVGKNLFTDVNSELVAKSRVTASGQSKADVAVFIDDTSA 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L+ G K + + + DS F D + Sbjct: 357 LKGGEYGLKYDGSDYVVTKPSGETVKVSTDSSGNAFYLDGM 397 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 38/399 (9%), Positives = 108/399 (27%), Gaps = 6/399 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S + L D+ + + L + + + Sbjct: 227 IGNGHTLVSGSEASQLKMVDGLPDAHQRRLAIVEGKSLKPITSSDIDGKIGAMLDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200 + I + + + + +N + + ++ R Sbjct: 287 IPAIMDELGRLATAFSYKVNALQEQGLDLNGNVGKNLFTDVNSELVAKSRVTASGQSKAD 346 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259 ++ I ++ ++ + Y + + + +S + + I Sbjct: 347 VAVFIDDTSALKGGEYGLKYDGSDYVVTKPSGETVKVSTDSSGNAFYLDGMRVEIRNPPE 406 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P A + + + Q E + + + + + Sbjct: 407 LGEKLLLRPTRNFAAQIHMATTDPKDIAAQSYEASTTFAKGTAGFKILEAGQLREFEVIV 466 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + +G + + ++ L N K A Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTAGALANDKFTANLVPSEGDNG 526 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + + T+L+ N S ++ L + + E ++ Sbjct: 527 NLRKLQDLQTGKILNDGESTILDLYHNLNTNTGLKSSTANRLSDIATLEKQSAQERIASI 586 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625 >gi|307699881|ref|ZP_07636932.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris FB024-16] gi|307614919|gb|EFN94137.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris FB024-16] Length = 976 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 97/301 (32%), Gaps = 18/301 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + +R D L + + + S E S D+ S ++ + + Sbjct: 63 GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + + T I NA +V T + + + E++ +++L Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + +ND I+ TA + + +D+RD L ISE+ G + + + + Sbjct: 182 MDSVLALNDRIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241 Query: 227 LFE--TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + NS + N +DG +A + KA+ + +S P Sbjct: 242 IGKGYEDGSIEIMLAGNSMVGKNYVNHFKVDGSRDMPGIDAAPREVYRKAVKALGNSTTP 301 Query: 285 I 285 Sbjct: 302 P 302 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 51/147 (34%), Gaps = 4/147 (2%) Query: 337 TICVNPQYRSNPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 T + + + + + + + + + Sbjct: 831 TFTNEKEDGGDFFTFAAANNNLPPALRLGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQ 890 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + TL E+ ++ + + + S + D + ++ + + V++ EE+ LI+ Sbjct: 891 DSATSTLNEWGKSVV-DVGVHASGARDSYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIR 949 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +Y + ++ + ML+TL+ + Sbjct: 950 GQHAYAGAARITSTVNSMLETLINLGR 976 >gi|261211316|ref|ZP_05925604.1| flagellar hook-associated protein FlgK [Vibrio sp. RC341] gi|260839271|gb|EEX65897.1| flagellar hook-associated protein FlgK [Vibrio sp. RC341] Length = 624 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 124/332 (37%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + A+K ++L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDIANKGLDLGVERINQLAIEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R N ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGSE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + T + I+G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 34/397 (8%), Positives = 103/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGSEASQLKVIDGFPDTQQHRLAMIEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATDDATKIAAQSFEASTTFAQGKAKFNILQAGAVREFEVHVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPSGPVTVQGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|117919778|ref|YP_868970.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3] gi|117612110|gb|ABK47564.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3] Length = 641 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 53/439 (12%), Positives = 126/439 (28%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVDD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQMTQTNDQITGMTKRINEISKELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 K I V+++ + G++ AL + RD + ++LD++A Sbjct: 239 TMDTKTGDPFPNELQLTSSIGSQSVAADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L + SN + Sbjct: 297 LGIADNFNKMQAQGFDLNGQVGSNIFRDINDPLMSLGRVGGY---------SNNTGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + + Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + + N I+ Sbjct: 408 ASGDRFVIRPTAGAANGIT 426 Score = 97.0 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 38/364 (10%), Positives = 95/364 (26%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + NFN + + I +I++ L + ++ Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQAQGFDLNGQVGSNIFRDINDPLMSLGRVGGYSNN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T + L + + T +G+TL I+ Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + ++ + K A + + Sbjct: 402 IKAGAMASGDRF---VIRPTAGAANGITVEMTDPKGIAAASPKITADAANSGNTQVKLTQ 458 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + PI G+ + A + Sbjct: 459 ITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEVD 518 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + TL + N+ + Sbjct: 519 STAA-ASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 TSVR 641 >gi|121607561|ref|YP_995368.1| flagellar basal body FlaE domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552201|gb|ABM56350.1| flagellar basal body FlaE domain protein [Verminephrobacter eiseniae EF01-2] Length = 426 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/483 (9%), Positives = 105/483 (21%), Gaps = 69/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 F + + N AS+ I N+ NA+ + V Sbjct: 2 GFQQGLSGLNAASKSLDVIGHNVANANTVGFKSGRAEFAEMVASAIGSADGLNAGIGVDV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ L + + F L + + Sbjct: 62 AAVSQQFGQGSLTITGNNLDVAINGAGFFTL------TLPDGTPAYTRSGNFKLDKDGNM 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +D A + K+ + Sbjct: 116 ITNDAARVMGYPVDPATGLRTGAEPVGMVFPTSAPIPAKQTGTITAAFN----------- 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + I + + +Y T D Sbjct: 165 LDARAPDAAGNPAAQPPVPATPRTTYGTSINVYDSQGVAKPVNLYFQKTATANTWAVYDR 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + V + Q + GKI P A Sbjct: 225 LDDPGATPPV-----------QAMPIGQITFDNDGKITG---------PAAPAPATGFAL 264 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + +P + + Q+ + + Sbjct: 265 PLTIDPTPPNPNGLP--------------------AYTVQLKLDGVTQFGTRFAVSSLSQ 304 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ L+ Y + ++ ++ I L N W+ + Sbjct: 305 DGYTVGELAGIDIESNGMLMTRYSNGVTRSEGQLALSRIRNAQGLAAVGSN--NWVATHA 362 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + S F + V+L EL ++ +++Y + + + D+++ TL Sbjct: 363 SGPAVVGTASDGNFGALRSGALEDSNVDLTAELVNMMTAQRTYQANAQTVKTQDQVMSTL 422 Query: 476 LEG 478 + Sbjct: 423 VNL 425 >gi|261253608|ref|ZP_05946181.1| flagellar hook-associated protein FlgK [Vibrio orientalis CIP 102891] gi|260936999|gb|EEX92988.1| flagellar hook-associated protein FlgK [Vibrio orientalis CIP 102891] Length = 624 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 125/347 (36%), Gaps = 17/347 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNLGAQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVD 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R L+ +++ + ++ + M + +++ D ++S Sbjct: 63 KVRRSWDQFAVNELNVSTTSHANKIDDEANLEMLSNMLSSVSSKK-IPENLNEWFDGVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A + QN N ++ +K+++L I + + E+ + Sbjct: 122 LADSPNDVGARKVVLEKANLITQNLNDFHETIRHQSDVTNKKLDLGIERVNQLAVEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +D + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDTHEKLIAELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + I+G + + + GK+ ++L +RD +P ++L + Sbjct: 239 SS-ELKMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKLGSMLSMRDEKIPQLMDELGK 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +A ++ + G + + + ++ + Sbjct: 297 LATSFSYEVNKLQSQGLDLRGNIGGLMFTDVNSDIVAESRVVTSSNS 343 Score = 92.4 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 49/414 (11%), Positives = 118/414 (28%), Gaps = 14/414 (3%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + K + H N T L+ +I+ Sbjct: 210 TKVTVTPRKNAEGFNVHIGNGHTLVSGTESSELKMIDGYPDVHQRRLAMIEGKGIKAITT 269 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 ++ + + D++I + L + + + + ++ + L DV Sbjct: 270 KDIDGKLGSMLSMRDEKIPQLMDELGKLATSFSYEVNKLQSQGLDLRGNIGGLMFTDVNS 329 Query: 199 QKISEIIGISTIVRN--------------NNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 ++E +++ + + S G + + Sbjct: 330 DIVAESRVVTSSNSKADLAVYIEDTNQLIGGEYSLQYSGGDYYITRPSGEQFIVPVVDNA 389 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 ++ + I I + S + P A +++ + Q E + ++ Sbjct: 390 ISLDGIRIDIRNDLESGERVLLRPTRSGAAQMRVETNDPSAIAAQSYEASTTFAQGTAKF 449 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + I+ K +G + + ++ L N Sbjct: 450 NIAQAGALREFEVVISPDGKQFAVTDTKGKVLLQPQDYPPTGAVTVQGTSFELTGGALPN 509 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 K A + I T+L+ N + S + L Sbjct: 510 DKFTANLVPSEGDNGNLLKMQNIQTDKKLNGGESTILDIYHNLNTDVGLQMSTASRLTDV 569 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S++ E ++ GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 570 SRLEKEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623 >gi|170024641|ref|YP_001721146.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis YPIII] gi|169751175|gb|ACA68693.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis YPIII] Length = 554 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 69/555 (12%), Positives = 146/555 (26%), Gaps = 80/555 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV E L A + + + + ++ +N+ + + + Sbjct: 60 TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145 L++ N +D KTV+ AE + N A ++ Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177 Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 K+ + S L + + + A D +S + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250 G + + T ++ + + T S Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297 Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 I+G A P A Q S+ +++ Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348 A F D + + G+ + + I ++ + Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDK 417 Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ +V+ + + AG D + + TL Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ + GVNL EE L + +Q Y + + Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537 Query: 464 LIMFTDKMLQTLLEG 478 ++ + TLL Sbjct: 538 VLQAASTLFNTLLSI 552 >gi|119775450|ref|YP_928190.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] gi|119767950|gb|ABM00521.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] Length = 453 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 55/483 (11%), Positives = 110/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + A + + NI N + + + VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYAASIFSNSKTQVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+A+ F + SAD + + +Y Sbjct: 62 TQVAQQFHQGSLQFTSNALDLAISGGGFF----VTSADPSARDYSFTRAGAFKVDSNNYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ R VQ + + Sbjct: 118 VDSAGNFLQTFPVDKFGNSTSVSLTTTRPVQIPDTAGSPVMTENVG-------------V 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + K D D S I + + + Y Sbjct: 165 QMNLNAGEKTKDPAAFDPDDPTTFNNSTSSTIYDSLGEPHILTTY------FVRPNDGAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + P+ + G + + Sbjct: 219 TGENNWVAYYALDGQPVNLGGGAGTYQTDTD-------GDGVPDTPATAQTTGGWTGSVL 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + P GI Q ++ QY S Sbjct: 272 TFNSTGTYTGTNPAIITTEPLGIGGAGILGPGADGSQTLTINFANPTQYASAFEVTELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W E Sbjct: 332 DGTTVGRLTNVEVGEDGLIKAAYSNGSTVPLGRVALVRFANEQGLTQVGN--TSWKESLA 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F I + V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGTALAGEANSGTFGAIRSAALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|256371026|ref|YP_003108850.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans DSM 10331] gi|256007610|gb|ACU53177.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans DSM 10331] Length = 462 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 65/474 (13%), Positives = 155/474 (32%), Gaps = 33/474 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS 57 A + + +N+ NA+ Y + VTV Sbjct: 4 GALYIALSGLEAQQVGLDVVAQNVANANTPGYQSESVDLANQQLPGSPVGDGVTVQGVLQ 63 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + +A L S + S + + + ++ L + S Sbjct: 64 AQNTFARSLELGSQAASSYATQLSSTLTAAQSGSFQEPSSTGISEQLNGLWSAFGQLSDT 123 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ ++V+ A++V + N +A + + D ++ L ++ + L+++ +N I Sbjct: 124 PTQLASAQSVVAAAQQVAEALNQAASNLTGLFNDTSQQASLLVAQVNTQLAQVASLNGQI 183 Query: 178 KFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 ++ + A+ +D R+ +L +++ IG + + ++ + V T + T + Sbjct: 184 AAQSGGEVGAANSLIDARNQVLSQLANEIGATVVPASSQQVNVLVGGVTLVQGTQSNALA 243 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + S I S+ V G + +L ++ +P + QL+ A+ Sbjct: 244 AAIAAPGSPPTASGTAQILLAGTSTQV--PVTSGSLGGMLASLNNNLPRYGTQLNATAQA 301 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L + IA + + +I VNPQ ++PS L + Sbjct: 302 LATQVNGLLASG--QTQGTTGPIAGPPLFVAAGGGTLDAGSIAVNPQIEASPSLLAASTT 359 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ ++G + + Sbjct: 360 PYAGGNGQNAAAIANLGSAADGPNALW---------------------SQAVGQVGLDVQ 398 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + L + + ++VGV++ +L L+ +Q+Y + K+I + Sbjct: 399 SATSLATSAAQQAQSAQTAEQSSVGVDVNGQLVNLVTYQQAYQAAAKVISTVQQ 452 >gi|66768556|ref|YP_243318.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. 8004] gi|66573888|gb|AAY49298.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 624 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 124/408 (30%), Gaps = 16/408 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTA--TNVAGLWSNFFDSASAL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTIGNSIDNASA--DLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R +V+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSPSS--LGGQIGGLLEFRSNVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + SF+ + G + + ++ Sbjct: 296 VGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLGAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 W + + + + V+ + Sbjct: 356 TLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGAPANG 403 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 50/474 (10%), Positives = 118/474 (24%), Gaps = 46/474 (9%) Query: 23 SIVRNIENADN-------------KNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68 +I +I+NA Y + NV ++ L Sbjct: 181 TIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLT 240 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + +L + + + +S + + R + + + Sbjct: 241 TVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSN------------VLEPTQ 288 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 + +S D + N+ + N TAS + Sbjct: 289 AELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLG 348 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 Q ++ + T G+T+ + + + Sbjct: 349 AVDGQ------------NVTLSFDAGSWKATRTDTGSTVP------LTGTGTAADPLVVN 390 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 + + G + ++ P + L + + A I + Sbjct: 391 GVSMVVGGAPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISD 450 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--SKKFLWNVK 366 N + Q + + + Sbjct: 451 VKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKVGDTF 510 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + ++ + D A VTL + ++ + Sbjct: 511 GVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQE 570 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ + S + GVNL EE + ++K++Q+Y + ++I D + Q +L V+ Sbjct: 571 VINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR 624 >gi|229522140|ref|ZP_04411557.1| flagellar hook-associated protein FlgK [Vibrio cholerae TM 11079-80] gi|229341065|gb|EEO06070.1| flagellar hook-associated protein FlgK [Vibrio cholerae TM 11079-80] Length = 624 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLIPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|319764539|ref|YP_004128476.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|330826755|ref|YP_004390058.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] gi|317119100|gb|ADV01589.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|329312127|gb|AEB86542.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] Length = 426 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 46/483 (9%), Positives = 118/483 (24%), Gaps = 69/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 F + + N +S+ I NI N++ + T V Sbjct: 2 GFQQGLSGLNASSKNLDVIGHNIANSNTVGFKASRTEFASMVATAIGTASTGNAGIGVQV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + + F +++ + + + Sbjct: 62 GAVAQQFTQGNITVTGNNLDVAINGNGFFKIQQ------PDGSFAYTRAGNFKLDDKGNV 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + +D Sbjct: 116 ITNNGGKVMGYPMDP--------------------------------------------- 130 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + K + I + + T PR Sbjct: 131 -ITQTRTASTPQPLVFPTGAPIPAKQTTSIKATFNLDARAPDAAGNPSATPPIAATPRST 189 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +N Y + P+ + + V L ++ P+ + ++ Sbjct: 190 YGTSLNVYDSQGVATPVSLYFQKTGTANTWDVYDR-----LDDPNATPPVVATPIGQITF 244 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + + + IA + +N + + Q+ + + Sbjct: 245 DNNGQITGPAATPPATGFQLPITIAPPTPNPNNLPAYTVQVNLDGVTQFGAKFAVSDLTQ 304 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L + N W+E Sbjct: 305 DGYTAGQLTGINIGDDGTIMTSYSNGVTRAEGQIALASFRNAQGLADIGNNL--WVETFE 362 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + ++ F + V+L EL ++ +++Y + + I D+++ TL Sbjct: 363 SGQPVMGVATEGAFGALRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTL 422 Query: 476 LEG 478 + Sbjct: 423 VNL 425 >gi|264676576|ref|YP_003276482.1| flagellar hook-associated protein FlgK [Comamonas testosteroni CNB-2] gi|262207088|gb|ACY31186.1| flagellar hook-associated protein FlgK [Comamonas testosteroni CNB-2] Length = 643 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 44/370 (11%), Positives = 115/370 (31%), Gaps = 14/370 (3%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSEN 59 + NI N + Y R+ S V T Sbjct: 2 GARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVATILRNF 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + ++ A ++A + + + N I+ + ++ S + Sbjct: 62 SELLNRQATAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADVSSAPT 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + V+ E+ F +++ ++ ++ +++ +++ + ++ +N I Sbjct: 120 DSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSQQVAALNGQISS 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A+ H +D LDQRD L++ I++ + S + + + ++ L + Sbjct: 180 AIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQ 239 Query: 240 MNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 ++ S ++ G + G+I LLQ +++ + +N L M + Sbjct: 240 ESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISI 299 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + G + + + S L+ Sbjct: 300 GDTLNAQNQLGLTLSGQKGGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYK 359 Query: 358 SKKFLWNVKN 367 K Sbjct: 360 IVFGNDAPKG 369 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 48/444 (10%), Positives = 117/444 (26%), Gaps = 19/444 (4%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R NK + + A +I L + + ++ K+ + Sbjct: 198 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 257 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168 E ++Q N E + + I ++ + Sbjct: 258 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNAQNQLGLTLSGQK 317 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224 + N + ++ D V ++ S + I VV SDG Sbjct: 318 GGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 377 Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275 T L + I+ + + + V +++ + + Sbjct: 378 QTTAFNDLTDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 437 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + ++ + S S G Sbjct: 438 VSAKINSLGDAAVRMSSLKVEKGFDASVFPAGTTLSFAPDGAGGMTYTITPAPSGVAATG 497 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 I + + G+ + + G + + + + Sbjct: 498 AYISGQAIELAPGLKVTLTGTPAVDGATSDTVSFGPNSFYSSDTGNASSFLSLRDAVIFD 557 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + ++ + + S + ++ + GVNL EE + L++ + Sbjct: 558 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAVSGVNLDEEAAKLLQYQ 617 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 QSY S K++ + ++++ V Sbjct: 618 QSYQASAKMLQVAQGIFDSVIQAV 641 >gi|167644975|ref|YP_001682638.1| hypothetical protein Caul_1010 [Caulobacter sp. K31] gi|167347405|gb|ABZ70140.1| protein of unknown function DUF1078 domain protein [Caulobacter sp. K31] Length = 556 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 59/556 (10%), Positives = 133/556 (23%), Gaps = 76/556 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVT 54 MS+ + + + S A+I NI N + Y R + + Sbjct: 1 MSINSAMLAGVSGLISNSSALAAISDNIANVNTVGYKRSSANFSTLVTAQSKSATYSAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 +++ + + +S + F E + + Sbjct: 61 VKAQTHQFVSQQGLTQSTTSNLDLSIAGSGFFVGTEKPEGLTATDTRSFTRAGSFQLDNL 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y KN + L + D + + ++ I + + + + + Sbjct: 121 GYLKNDAGLYLQGWLADPVTGTITPDPSDLTQLSSINVGTVGGTAEKTTRIGVNANLRSE 180 Query: 173 VNDAIKFKTASKHDA-HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + A D + S + V S GT F+ V Sbjct: 181 QPVSAAANAVATKTAVIDSGGATNNYSVYYSPTGTGNQYQVEIRKAGVAVSTGTATFDPV 240 Query: 232 PRDINFEKMNSYTVT---SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ + N + + +++ + + D + Sbjct: 241 TGNLLSTTLPGTPPNLNIGGGNTVTQTQLGLNNKTDAVSSGAYDPTTRSMSDYALDNTTG 300 Query: 289 QLDEMARVLIGSFS-------------------------------EKDPIAGNSENVPGL 317 + + S S + + + Sbjct: 301 VKPDFEIQIPVSDSKGGQRTITLSLLKGPGPNEWFAELRAKPGDLDNNANGQIASGKVTF 360 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + N I + N++ Sbjct: 361 TTDGKLASVGNLFGGVTPTAISIGASDPLAVGTAPRWADGLGIDAQNLQVDLASASGGLT 420 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEY---------------------------------A 404 +S + + N+T +E Sbjct: 421 QYNSQSVVQSVNTNGTAFGNLTNIEVDDKGYVSAIFDNGVTRRIAQVAIATFSNPNGLKG 480 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + N S ++ L I+ S V+L E + LI +++Y+ S+K+ Sbjct: 481 VNGNAYRVTNESGTYSLKTPGGGGAGSIAPSTLEASTVDLSTEFTGLITTQRAYSASSKI 540 Query: 465 IMFTDKMLQTLLEGVK 480 I D+ML+ LL + Sbjct: 541 ITTADQMLEELLSIKR 556 >gi|153213645|ref|ZP_01948918.1| flagellar hook-associated protein FlgK [Vibrio cholerae 1587] gi|153825351|ref|ZP_01978018.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-2] gi|153829350|ref|ZP_01982017.1| flagellar hook-associated protein FlgK [Vibrio cholerae 623-39] gi|229524186|ref|ZP_04413591.1| flagellar hook-associated protein FlgK [Vibrio cholerae bv. albensis VL426] gi|229528804|ref|ZP_04418194.1| flagellar hook-associated protein FlgK [Vibrio cholerae 12129(1)] gi|262191683|ref|ZP_06049859.1| flagellar hook-associated protein FlgK [Vibrio cholerae CT 5369-93] gi|124115844|gb|EAY34664.1| flagellar hook-associated protein FlgK [Vibrio cholerae 1587] gi|148875191|gb|EDL73326.1| flagellar hook-associated protein FlgK [Vibrio cholerae 623-39] gi|149741035|gb|EDM55104.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-2] gi|229332578|gb|EEN98064.1| flagellar hook-associated protein FlgK [Vibrio cholerae 12129(1)] gi|229337767|gb|EEO02784.1| flagellar hook-associated protein FlgK [Vibrio cholerae bv. albensis VL426] gi|262032422|gb|EEY50984.1| flagellar hook-associated protein FlgK [Vibrio cholerae CT 5369-93] gi|327484710|gb|AEA79117.1| Flagellar hook-associated protein FlgK [Vibrio cholerae LMA3894-4] Length = 624 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|229513835|ref|ZP_04403297.1| flagellar hook-associated protein FlgK [Vibrio cholerae TMA 21] gi|229349016|gb|EEO13973.1| flagellar hook-associated protein FlgK [Vibrio cholerae TMA 21] Length = 624 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 125/347 (36%), Gaps = 17/347 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +A + + G + + + ++ + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIASSRVVTNSNS 343 Score = 93.2 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIASSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|228945356|ref|ZP_04107711.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814328|gb|EEM60594.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 437 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G V + + + ++ + + Sbjct: 107 NGGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKNGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D ++ + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALAHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|127512285|ref|YP_001093482.1| flagellar hook-associated protein FlgK [Shewanella loihica PV-4] gi|126637580|gb|ABO23223.1| flagellar hook-associated protein FlgK [Shewanella loihica PV-4] Length = 638 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 52/443 (11%), Positives = 125/443 (28%), Gaps = 27/443 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + N A+ + Q A NI NA+ + Y R+ + Sbjct: 1 MSM-DLLNIARTGVLASQSQLAVTSNNITNANTQGYHRQVAEQSSLESQRLGNSFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L +A+ Q + Q+ + + + + + ++ L Sbjct: 60 YITDVKRIYNEYAARELRIGQTALSQAQTTQTKMSELDQLFSQ--IGKAVPQSLNDLFAG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S + + + +++ NA+++ + N ++ + +I + +EL Sbjct: 118 LNSLADLPDDMGIRGSLLGNADQIAKALNQMQSQLDGQMKQTNDQISAMTDRINEISTEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + + LD++D L+Q++SE ++ I + + L Sbjct: 178 GHINQELMKSQGA---DMQLLDKQDALIQELSEYAQVNVIPLESGAKSIMLGGAVMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + G + AL Q RD + Q ++ Sbjct: 235 EVSMQMGATTGDPYPGELRITTTAGNQTLVVDP--SKMGGSLGALFQFRDETLIPAQLEM 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A + SF++ + G + I D + N + Sbjct: 293 GQLALGIADSFNQAQSQGFDLNGEVGSDLFLDINDPAMSVG---------RAGAYGNNTG 343 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + ++ +N + + Sbjct: 344 NAALRVNIDDVNALSGGSYELTFTAPATYELRDQETGTVTPLTLNGSQLTGGDGFSINID 403 Query: 411 LEKNRSDSHDLHMKSQVVFNHIS 433 S + I Sbjct: 404 SGAMASGDRFEIRPTSGAAAGIK 426 Score = 93.6 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 40/410 (9%), Positives = 103/410 (25%), Gaps = 18/410 (4%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +M + + L + F + Sbjct: 229 VMLVSGEVSMQMGATTGDPYPGELRITTTAGNQTLVVDPSKMGGSLGALFQFRDETLIPA 288 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS------ 202 + + + + + S+ +N + + R + Sbjct: 289 QLEMGQLALGIADSFNQAQSQGFDLNGEVGSDLFLDINDPAMSVGRAGAYGNNTGNAALR 348 Query: 203 -EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN-FEKMNSYTVTSESNPIFIDGVVVS 260 I ++ + + ++ L + + S + I ID ++ Sbjct: 349 VNIDDVNALSGGSYELTFTAPATYELRDQETGTVTPLTLNGSQLTGGDGFSINIDSGAMA 408 Query: 261 SNQ--GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 S G + + I ++ ++ ++ +V Sbjct: 409 SGDRFEIRPTSGAAAGIKVVMTDPKGIAAAAPKITQDAANSGNTQVKLVSIDNRSVANFP 468 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN-- 376 + + E P+ + F + V A D Sbjct: 469 LTGSELTFEIDTTANTFEVFDAAGNSLGAPTAFTPPSISAYGFTFEVDASAPATDRFTFD 528 Query: 377 ------HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ + + N TL + + + + ++ V++ Sbjct: 529 LSFAEGDNTNAVAMAKLAETKLMNNGGSTLADVYEGTKLQVGGKAKAAEVAFGSAEAVYS 588 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GVNL EE + L++ +QSY S +++ ++ TL V+ Sbjct: 589 QAYTRVQSESGVNLDEEAANLMRFQQSYQASARIMTTATEIFDTLFSSVR 638 >gi|85058011|ref|YP_453713.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] gi|84778531|dbj|BAE73308.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] Length = 404 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 49/473 (10%), Positives = 118/473 (24%), Gaps = 71/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+Q I NI NA + + Sbjct: 2 GFAQGVSGLNAAAQALDVIGNNIANAQTVGFKSSSASFADMFSESMIG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L +++ + + ++ + N + + Sbjct: 50 -------------LGVQLAGVQQDFNDGTMIAGAGNINMAIAGSGFFRLADNGGKIYYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N + + +A + + + Sbjct: 97 NGEFERNKYGEIVNKQGKYLTGYKATGTPLGNITVPD----------------------T 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + L + + + ++ SY Sbjct: 135 PMPGAVSTEGSLGDNLPSNS----------------------EPPKVAEFDIKEPKSYNY 172 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +++ G + K + ++ D P+ + D+ + I S Sbjct: 173 STQFTAYDSLGNPHNIKVYYIKGKEAGQWTVKCYDETAPVLLDPNDKDKKPKIFSQDITF 232 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 GN + + L+ T+ Q + + + +N Sbjct: 233 DAYGNLDEKTTPKLPFESAKLNGANELKFDITLFGLKQQGTEWTMSLPQTNGYAVGKFNG 292 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++I Y + + +A L N W E S + + Sbjct: 293 YSVGDNGEIIASYSNQQTQLIAQVVMASFTNTGGLQPSGDNC--WTETGASGAPLIGTSD 350 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I V++ EL ++ +++Y + + I D++LQTL+ Sbjct: 351 TGSFGVIRGKMLEASNVDMSNELVKMMTQQRNYQSNAQTIKTQDQLLQTLVSM 403 >gi|146293684|ref|YP_001184108.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] gi|145565374|gb|ABP76309.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] Length = 641 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 127/439 (28%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I ++N + L Sbjct: 182 LELMKSP---NQDAILLDKQDALVQELSQYAQVNVIPQDNGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 K + I VS++ + G++ AL + RD + ++LD++A Sbjct: 239 TMDTKTGNPFPNELQLMSSIGSQSVSADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L + SN + Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + + Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSINIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I+ Sbjct: 408 ASGDRFAIRPTAGAANGIT 426 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 103/364 (28%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + NFN ++ + I +I++ L + ++ Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T + L + + T +G+TL IN Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIN 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I + ++ Sbjct: 402 IKAGAMASGDRFAIRPTA-GAANGITVEMTDPKGIAAASPKI---TADAANSGNTQVKLT 457 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 I + S + SE L + G S S +F Sbjct: 458 QITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEV 517 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 S N + ++ + + TL + N+ + Sbjct: 518 DSTAAASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 TSVR 641 >gi|301168104|emb|CBW27690.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 426 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 52/484 (10%), Positives = 114/484 (23%), Gaps = 62/484 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQR 56 M +L FN N Q I NI NA + + Q Sbjct: 1 MGILRSFNIGVTGLNAVGQGMGVIGDNIANAGTNGFKSSRAEFQDVLATSLKGIDGGDQF 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + + + + E Sbjct: 61 GAGTKLAHIKTLMTQGDVARTDNITDLAVNGDGFFKVNAPFGKGFTRDGSFHFNKEGELV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + D ++ +KE +++ + VN Sbjct: 121 NSDGYQVIGFEADETGKI-----------------TNKEAPVKLGSTTIPAKASEKVNFN 163 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + ++ + D S ++ +V T Sbjct: 164 LNLDSRAEIKEFNIADPDATSNFSNS----VTVYDNVGTARLVTMYYNKTGDNQWTYRAL 219 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + S G ++ +N+G + + P + + Sbjct: 220 VDGADVEGGESGQFVEMAQGNIIFNNKGQLQEEVEGSNSFNFNKGAAPDQKITFNF---- 275 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + E I + QY S + R Sbjct: 276 -------------------------------GESISEGGEGIGASTQYGSGSAIARHSQD 304 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + L Y + +++ VA N L + +N + E S Sbjct: 305 GFSAATLASMSFNDAGILTAVYDNGESRDISQIAVAKFENNEGLFKVGKNLM--KESRNS 362 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + V++ E L+ ++++ + K + D+MLQ +L Sbjct: 363 GEAAMGKPGESGRGEVLSKSIELSNVDIANEFVGLMTAQRNFQANAKTLTTADEMLQQVL 422 Query: 477 EGVK 480 + Sbjct: 423 NIKR 426 >gi|301053291|ref|YP_003791502.1| flagellar hook protein [Bacillus anthracis CI] gi|300375460|gb|ADK04364.1| flagellar hook protein [Bacillus cereus biovar anthracis str. CI] Length = 437 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 47/478 (9%), Positives = 128/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + + + ++ + + Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G++ + Y + + + + Sbjct: 280 TTGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|21231391|ref|NP_637308.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991635|ref|YP_001903645.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. B100] gi|21113056|gb|AAM41232.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733395|emb|CAP51596.1| Flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris pv. campestris] Length = 624 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 124/408 (30%), Gaps = 16/408 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTA--TNVAGLWSNFFDSASAL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + D LDQRD L+ K+ G + ++++ M V+T+ G L Sbjct: 180 GTIGNSIDNASA--DLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + Y T + G VS + S G+I LL+ R +V+ Q +L +A Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSPSS--LGGQIGGLLEFRSNVLEPTQAELGRLA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + SF+ + G + + ++ Sbjct: 296 VGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLGAVDGQNV 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 W + + + + V+ + Sbjct: 356 TLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGAPANG 403 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 50/474 (10%), Positives = 117/474 (24%), Gaps = 46/474 (9%) Query: 23 SIVRNIENADN-------------KNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68 +I +I+NA Y + NV ++ L Sbjct: 181 TIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLT 240 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + +L + + + +S + + R + + + Sbjct: 241 TVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSN------------VLEPTQ 288 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 + +S D + N+ + N TAS + Sbjct: 289 AELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLG 348 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 Q ++ + T G+T+ + + + Sbjct: 349 AVDGQ------------NVTLSFDAGSWKATRTDTGSTVP------LTGTGTAADPLVVN 390 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 + + G + ++ P + L + + A I + Sbjct: 391 GVSMVVGGAPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISD 450 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--SKKFLWNVK 366 N + Q + + Sbjct: 451 VKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKAGDTF 510 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + ++ + D A VTL + ++ + Sbjct: 511 GVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQE 570 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ + S + GVNL EE + ++K++Q+Y + ++I D + Q +L V+ Sbjct: 571 VINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR 624 >gi|332525066|ref|ZP_08401246.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] gi|332108355|gb|EGJ09579.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] Length = 432 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 57/483 (11%), Positives = 121/483 (25%), Gaps = 63/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR--- 56 F + + N S+ I NI NA+ + V V Sbjct: 2 SFQQGLSGLNATSKSLDVIGNNIANANTYGAKVSRAEFSDMYATALNGAGVNNVGIGVTL 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + +A+ F + + +S + + + E Y Sbjct: 62 GAVSQQFTQGNISTTGNAMDMAINGAGFFQVTDGVSP------TVYTRNGQFKVDREGYI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L A+ A+ ++ A +I Sbjct: 116 VNNEKLKLMGY---PADGTGTIQPGLAQPLKLPTAGIAPSATSKIELEFNL--------K 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A TA A +D D + + + + Y + V Sbjct: 165 ADSVVTAPAATATPQIDFTDKSTYNNATSVVAYDSKGQDVALSYYFQKESNDKWNVYVTA 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N + +N + ++ + S P + Sbjct: 225 NGQPVNVDAAGNPVKWQTLEFDNTTGRLASPDPADALA---------------------L 263 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + DP+ G + + + + + QY Sbjct: 264 SITNDLIITDPVTGRETSRIVVPLNMSV-------------NVASATQYDQTFGVTNLTQ 310 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ Y + +K +A L N W Sbjct: 311 NGYAAGQLTSIAIEADGIVLARYSNGQSKPAGQLELANFRNPQGLQPLGGNV--WASTYA 368 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + S+ I ++L EL +I ++ Y + + I D+++QTL Sbjct: 369 SGDAVVGVPSEGNMGVIQAGALEESNIDLTGELVNMITAQRIYQANAQTIKTQDQVMQTL 428 Query: 476 LEG 478 + Sbjct: 429 VNM 431 >gi|238764392|ref|ZP_04625342.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] gi|238697418|gb|EEP90185.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] Length = 437 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 47/477 (9%), Positives = 109/477 (22%), Gaps = 46/477 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTTTTTNRRLDLAISQNGFFRMQD------STGGIFYARNGQFKLDENRNIVNMQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + T Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQGMIPAKATT 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S + + +++ + + G++T + + T F+++ Sbjct: 151 SGNMVANLTSTHNIIPAETTSSAGVTTPTFDPDKPDTYSFVNNITTFDSLGNRHEINVFY 210 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 N D S+ A + ++ + + N + Sbjct: 211 VKRSEDAVNGNSWDVYTRDSSAVPAQVAERRGSMRFDTNGALVETTNPVITPPATTPVET 270 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P Q S + + Sbjct: 271 PTTVPFTLTIP---------MGIVNGAPAQDFALNVAGSKQQNTGTDSIVTQNQTGYAAG 321 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + ++ Y + + + L N W E S + L Sbjct: 322 EFTGFQINNDGSVVGTYSNQQTQLLGQIVMVNFANPEGLSSEGNNV--WKETLSSGNAIL 379 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 380 GTAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 436 >gi|121596117|ref|YP_988013.1| hypothetical protein Ajs_3830 [Acidovorax sp. JS42] gi|120608197|gb|ABM43937.1| protein of unknown function DUF1078 domain protein [Acidovorax sp. JS42] Length = 538 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 52/544 (9%), Positives = 121/544 (22%), Gaps = 79/544 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 F + + N +++ I NI N++ + T + V Sbjct: 2 GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L +++ F L+ + + Sbjct: 62 SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQ------MPDGSRAYTRAGNFKLDNVGNV 115 Query: 116 KNLSEDILGKTVIDNAEEVVQN-------FNTSAREVQKIRADADKEIELEISNLRRFLS 168 + ID + + F T+A + L+ Sbjct: 116 VTNDGAQVMGYPIDPVTGLRTSSTAVPLTFPTTAPIPARQTTAIKTAFNLDARTPNAKGD 175 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQ----------------RDVLLQKISEIIGISTIVR 212 +T + + Q + +++++ + Sbjct: 176 SSATPPVPETPRTTYGTSLNVYDSQGVATPLSFYFEKNGANTWDIYNQLNDLTTTPPTIP 235 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 VV+ G P D + T S G Sbjct: 236 PVAGRVVFDKAGAITASLEPSDPTKNGGTAKTDYPTSFKFHFYGPDAQGVYAIREATVSA 295 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-- 330 + D + L +D GN + + G + Sbjct: 296 SSPDAAWDFSYSDSPTNSVVASARLREDLITRDATTGNWTLPAPVPASRGTATVTPADLK 355 Query: 331 ------------------------------------CQGISETICVNPQYRSNPSFLRDG 354 ++ + Q+ + + Sbjct: 356 TAPAAAKQSFELALMVNPSPANPNSPTAPGSNPAPSEFPVTLDLNNVTQFGTKFAVSELS 415 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 N+ ++ Y + + +A L N W+E Sbjct: 416 QDGYTSGELTGINVENNGMIMTRYSNGVTRAEGQVALASFRNTQGLAAVGGN--NWVETY 473 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + F + V+L EL ++ +++Y + + I D+++ T Sbjct: 474 ESGQPVMGAPTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMST 533 Query: 475 LLEG 478 L+ Sbjct: 534 LVNL 537 >gi|49480337|ref|YP_035873.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331893|gb|AAT62539.1| flagellar hook protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 437 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N A + NI NA Y ++ + N TV + + Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + F + S T K+ ++E L D Sbjct: 59 AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V + S + ++ + + Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +S + N+ + V TT +++ Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVENPVPGE 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 YT + S N+ P + ++ + + + + + + Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + G++ + Y + + + + Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N +++ ++ Y D K VA + L++ ++ + + Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437 >gi|157376216|ref|YP_001474816.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157318590|gb|ABV37688.1| flagellar basal body FlaE domain protein [Shewanella sediminis HAW-EB3] Length = 454 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 108/483 (22%), Gaps = 41/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + A + + NI N ++ + T Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTGVGGGATT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F S+ D + SY Sbjct: 62 SHVAQQFHQGSLQFTNNALDMAINGGGFFVTSSGFSSQDLS----YTRAGAFKVDSNSYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D T + V+ + + Sbjct: 118 VDSQGNFLQAFEVDKDGNSTSVSLTETKPVRIPDTAGSPKKTENVG-------------I 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D S + + + + M Y Sbjct: 165 QMNLNAGDGTKDPALFDPSDRDTYNNSTAVTMYDSLGEPHVMTTY------FVRPNNAAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N E + + I G VV+ + ++ ++ Sbjct: 219 NLESNWVAFYAVDGKQVDIAGPVVNYDTDTSGNGTVDG------NAPAQATLGNWKGSVI 272 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 S + Q ++ QY S Sbjct: 273 KFNELGSHTTTDPATIITETLGNGGADVLGPGTDGSQALTIDFDNPTQYASAFEVTELTQ 332 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +A L + W Sbjct: 333 DGTTVGRLTNVEVGADGLINASYSNGATVALARVALARFANEQGLTQVGN--TSWKASLD 390 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 391 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 450 Query: 476 LEG 478 L+ Sbjct: 451 LQI 453 >gi|327192294|gb|EGE59259.1| flagellar hook protein FlgE [Rhizobium etli CNPAF512] Length = 483 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 55/481 (11%), Positives = 117/481 (24%), Gaps = 52/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 54 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 113 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + + N + Sbjct: 114 QTSVRQAISEQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSA 173 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + I + L+ V Sbjct: 174 GYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLNSEATVVTDTTT 233 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ + Q+ L+ S + V + G T + Sbjct: 234 LPSANTSSVTDDTQKMSLVAYDSLGATVQYDYYFTKTGVTTDASGAVTGSTWEVAVY--- 290 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N+ T + VS + S G++ + Sbjct: 291 RNADAATRGTTSFPYSSDAVSVSTLSFDADGQLTSATD---------------------- 328 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 +D Q IS Q S+ S Sbjct: 329 -----------------------TDIVDPTTAQTISMDYSSFTQLASDFSATGS-ADGQA 364 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + K P+A + + L + N RS Sbjct: 365 ASSVSSVSIDTDGVVSVSYANGTTKALYQIPLATVASPDNLTLLSGNVYT--ANGRSGVT 422 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 423 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 482 Query: 480 K 480 + Sbjct: 483 R 483 >gi|238751762|ref|ZP_04613250.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] gi|238710033|gb|EEQ02263.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] Length = 430 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 113/476 (23%), Gaps = 51/476 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSSSVSFADMFAGSQAGMGVQVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTATTTNRRLDIAISQSGFFRMQD------STGGIYYARNGQFKLDENRNIINMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + + + S V+ F Sbjct: 116 LTGYPAT-GTPPTVKQGANPIALSIPQDIISAKATDSGKMVVNLTSTHKVIPATPAFDPE 174 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + S +I + + + + + ++ +K Sbjct: 175 KPDTYSFVNNLTTYDSLGNSHVINVFYVKTAEDAVN---GNSWQVYTKDSSATLADKTKP 231 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + T +++ + AL + + P L + + + S Sbjct: 232 FDPT----------DPAAASLRGTMVFDTNGALKSVANGTNPASTTDLTMAIPMGVVNGS 281 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q S + + Sbjct: 282 PAQSFKLDVTGS--------------------------KQQNTGTDSVVAQSQTGYAAGE 315 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + L+ Y + + + L N W E S S L Sbjct: 316 FTGFQIGTDGALVGTYSNQQTQLLGQIVMVNFANPEGLSSAGDNV--WKETQTSGSPILG 373 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ + V+L EL +I +++Y + + I D++LQTL+ Sbjct: 374 IAGSGGFGTLTSGALESSNVDLSAELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 429 >gi|291613044|ref|YP_003523201.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus ES-1] gi|291583156|gb|ADE10814.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus ES-1] Length = 640 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 132/400 (33%), Gaps = 14/400 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 +++ A + N A + NI NA+ Y R+ + + V V T Sbjct: 2 SIYGIAVSALNAAQAGLTTTSNNIANANTPGYSRQAIIQAGMLPQNTGSGYFGQGVNVTT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + ++ T + ++ + Sbjct: 62 VVRRYDQFLGAQVLEAQTQSSNLNTQLGLAQQVSNLLGT--ASSGLTPAMQDFFTAVNAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + +T+I +A+ + F + + +IR + +I ++ + + ++ +N Sbjct: 120 ANAPQSVPARQTMISSAQSLADGFQAMNQNMNQIRDGLNGQISASVTQINSYAKQIAALN 179 Query: 175 DAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 D I A+ + +D LDQRD L+ ++S+ I +STI +++ M V+ +G +L Sbjct: 180 DKIVQLQANTPNQAPNDLLDQRDQLVNQLSQEIRVSTIKQSDGSMNVFIGNGQSLVLGNQ 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ T+ S Q S++ G + + R +++ N L Sbjct: 240 TTTLQTVTSTTDPTALEVAYLNGNGTTSRIQQSSLQGGNLGGFISFRQNILDPAINALGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L F+++ + + G+ + + ++ Sbjct: 300 IAMGLADKFNQQQQQGVDLKGALGVNMFTMATPSVTAATSNAGGAVITATVNSTSALTGN 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 D V +NV N A + + Sbjct: 360 DYSVVFDGTNYNVYNTATNSLVQSFTPAQLTAGQAVTGTG 399 Score = 86.6 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 34/384 (8%), Positives = 92/384 (23%), Gaps = 13/384 (3%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 +S S + + + LG+ + A++ Q + + Sbjct: 270 QQSSLQGGNLGGFISFRQNILDPAINALGRIAMGLADKFNQQQQQGVDLKGALGVNMFTM 329 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ + + +D D + + + + + Sbjct: 330 ATPSVTAATSNAGGAVITATVNSTSALTGNDYSVVFDGTNYNVYNTATNSLVQSFTPAQL 389 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + T F + +A P + Sbjct: 390 TAGQAVTGTGITLQLTGGAAATSDTFLVRPTVNGASNFSLSFTDPTKIAAASPIRSNAPV 449 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + L + + + P+ N P F G + + Sbjct: 450 SNLGTGTIGAA-----SVTGGLPLNANLQQPVTITFNNPPTTFNVTGTGTGNPVNVPYTA 504 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + ++ +S + N Sbjct: 505 GAAITYNGW--------TTQISGAPSAGDTFTVSQNTSATTDGSNSLLMAALQTANTLAN 556 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + + +G + + + ++ + GVNL EE + L++ + Sbjct: 557 STTSFQGAYGQLVGQVGTQTNQLTVTSKAQTSLLTSVTTAQQAVSGVNLDEEAANLLRYQ 616 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 Q+Y + K + + M T+L Sbjct: 617 QAYQAAGKAMQIANTMFDTILNLK 640 >gi|319944135|ref|ZP_08018413.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] gi|319742629|gb|EFV95038.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] Length = 417 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 121/483 (25%), Gaps = 78/483 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVT------VVTQ 55 F + + N A++ +I N+ NA + + V+ Sbjct: 2 AFQQGLSGLNAAARHLDTIGHNVANASTVGFKASRAEFADVYATTVYGVSNVSPGIGTEV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F + + A + + Y Sbjct: 62 GAIAQQFSQGALTTTNNSLDLGINGGGFFRMSDNGGAIT------YTREGQFKLDKSGYI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L +D V +L + + Sbjct: 116 VNASGKRLTGYPVDKNGVVT----------------------------NGTAQDLKLDST 147 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I K + +D R + + V+ S G + Sbjct: 148 DIAPKQTTSAAVRVNVDARATTPANAFTLTDAK-TYDGGTSVSVFDSLGREHVMAMYFRK 206 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T + P+ + + + P G +K Sbjct: 207 TGDNSWDVHGTLDGEPL---NGGAAVGKLAFNPNGTLKG--------------------- 242 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 D + + F D +S Q+ +N + Sbjct: 243 -------ASDGNGDPTTSNVMTFDVSLNMGADAGGNHTVSVNFADTTQFGTNFTVAHQEQ 295 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ L+ Y + + +A L N W E Sbjct: 296 NGNGSGKLAGFSVGRDGSLMARYTNGQTVSKGRVALANFTNPQGLQPLGGNQ--WGETAD 353 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + S I + V+L +EL +I ++ Y + + + D++LQT+ Sbjct: 354 SGAPLVGSPSTGTLGVIQSGALESSNVDLTQELVNMITAQRVYQANAQTVRTHDQLLQTI 413 Query: 476 LEG 478 + Sbjct: 414 VNL 416 >gi|331269322|ref|YP_004395814.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125872|gb|AEB75817.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 491 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 44/504 (8%), Positives = 112/504 (22%), Gaps = 43/504 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------------- 46 + + NI N + Sbjct: 1 MYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQGGVNG 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + M ++ S + + + + + Sbjct: 61 KQVGLGVQVAGI---DSVMSQGMMQPTSRNLDVAMDGTGYFIVAKGAL-PESNAGGIAVS 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 S S ++ N + D + + +I EL I Sbjct: 117 ESDHTMSGGAFQVNYTRDGSFTLDHQGNLLTSDGYRVMGYAINEIDDKGKAVGELSIDYS 176 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + + K + D V KI++ + + + Sbjct: 177 KNGATSFVNADGKYGLKATNTIVPLRIPDSVHVKATKIAKDDASKVEMDFIGNGSMDKIT 236 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +T E + + N DG + + K ++ + + Sbjct: 237 TKAKIDTEGTTFEGESNFNIKIK---NIKQDDGTFKKALLINGEQLLKEDGSVEDFKTTL 293 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 +L ++ L G ++ + + K + + Sbjct: 294 -----ELGDIEGHLKGKNGWDKEPDATKKDALEKQAKEQALKIFGKNTKVNITEPVIPAG 348 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + ++ + D A L + Sbjct: 349 EDESKFSWSFTLVAEGDKKLRSFSIEKDGLVKGVLDDGTVTALGQIATASFKNQEGLKKE 408 Query: 404 ARNSIGWLEKNRS-------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 +N + + + + + V+L E+ + +I + Sbjct: 409 GKNLFSNTANSGVPTVRSGLGAPKNLDNGDG-YGEMLQGMLEMSNVDLAEQFTDMIVTTR 467 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 ++ S K+I D++LQ ++ + Sbjct: 468 AFQASGKMISTGDEILQDIINLKR 491 >gi|227876730|ref|ZP_03994839.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35243] gi|269976257|ref|ZP_06183253.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris 28-1] gi|227842627|gb|EEJ52827.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35243] gi|269935586|gb|EEZ92124.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris 28-1] Length = 1034 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 18/299 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + +R D L + + + S E S D+ S ++ + + Sbjct: 63 GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + + T I NA +V T + + + E++ +++L Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + +N+ I+ TA + + +D+RD L ISE+ G + + + + Sbjct: 182 MDSVLALNERIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241 Query: 227 LFE--TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + NS + N +DG +A + KA +++D+ V Sbjct: 242 VGKGYEDGSIEIMLAGNSMVGKNYVNHFKVDGSRDMPGIDAAPREVYQKAENELQDNKV 300 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + + + TL E+ ++ + + + S + D Sbjct: 916 LGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQDSATSTLNEWGKSVV-DVGVHASGARD 974 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + + V++ EE+ LI+ + +Y + ++ + ML+TL+ + Sbjct: 975 SYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIRGQHAYAGAARITSTVNSMLETLINLGR 1034 >gi|293115683|ref|ZP_05792615.2| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] gi|292808788|gb|EFF67993.1| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] Length = 440 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 127/478 (26%), Gaps = 38/478 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + I NI N + + + + TQ + N Sbjct: 1 MMRALYSGVAGLKTHQTKMDVIGNNIANVNTVGFKSQSVTFSDVFYQ---TTQNASGANA 57 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + ++ IG + S +N I+ + + + Sbjct: 58 ETGMGGTNAKQIGLGSTVSSITTKVSESGGSQSTSNPFDLMINGDSMFIVNNAGTNYFTK 117 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G +D+A +V + + + + ++ +++L + +E Sbjct: 118 AGNFTVDSAGTLVTSQGYAVQGWKANEEGV--IMKGPVTSLNLYGAENKYAAPEATENCT 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + D + M + D V + + + Sbjct: 176 ISGNINKEDDGFES---------------GVGRSMNITFYDTLGYEYQVTVKVTQDPDDD 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y + + G V + + + + V + L + Sbjct: 221 YKYNLVATGLTCGGKAVDFGADAQTKLEGLLKDVTLTFDKVTGELADPADGKVTLNTTTL 280 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D +A + T R + L G+ Sbjct: 281 GIDSLAKDVNLDFSKMT--------------CLGTDTSFTPARGDKEGL---GAGRLVGT 323 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ ++ +Y + +K VA L + N + + Sbjct: 324 MSGVSIQKDGIIVAYYDNGDSKIIAQIAVANFKNLSGLEKVGDNLFAETLNSGNFDGIGD 383 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + S V+L E + +I ++ Y ++++I +D +L+ L+ + Sbjct: 384 DITEDG-GYFSPGVLEMSNVDLAAEFTDMITTQRGYQANSRIITVSDTLLEELINLKR 440 >gi|114799551|ref|YP_758981.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] gi|114739725|gb|ABI77850.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] Length = 434 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 59/489 (12%), Positives = 120/489 (24%), Gaps = 64/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53 MS+ + N + + A+I NI N+ Y R + V Sbjct: 1 MSISSSLNAGVMGLSVNGTRLATISDNIANSGTYGYKRSAVDFSSMVLQQKTSAYAAGGV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--HYNNSPTHYISKLRDSL 111 + L SA + + ++ + N Sbjct: 61 RVDTYKDIAATGSLIRTGSATDVAISGRGLLPVTDLDGTTNLASNRNMMLTPTGSFFADE 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 Y + S L D++ V S + + + S + Sbjct: 121 NGYLRTQSGLFLLGWAADSSGGVGNVSRNSGANL--------VPVNISTSQFNATPTSSI 172 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + I + D + ++ TV Sbjct: 173 DLGINIPADATTAGGPGDPYMLPVEYFDNLGRAQTVT----------------FQFTPTV 216 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + N S +P+ G + + S G+I + + ++ Sbjct: 217 PAAGSSNEWNVEIFDSAGDPLTSVGDLALTFNDSPTAGGRIASATAANGATYDPATGRVS 276 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ G Q ++ + Sbjct: 277 LTLD-----------------------------HGPVEVFIGRPNDSAGITQLAASFAPT 307 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + S + L Y F + PV + L +S + Sbjct: 308 AVTKNGSPIGDLQSIEIDEQGFLQAIYDKGFRRTLYQIPVGDVPNMNGLRAL--DSQAYS 365 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N S + L IS ++ EL+ LI+ +++Y+ + K++ D+M Sbjct: 366 VSNSSGNLYLWDAGSGPVGGISGYSLMESTTDIASELTDLIETQRAYSSNAKIVQTVDEM 425 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 426 LQETTNLKR 434 >gi|260774944|ref|ZP_05883845.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] gi|260609199|gb|EEX35357.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] Length = 624 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 54/448 (12%), Positives = 152/448 (33%), Gaps = 22/448 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNLGSQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGANMPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R ++ ++ + ++ + M + +++ D+++S Sbjct: 63 KVRRSWDQFAVNEMNISTTNYAHKVDDEANLEMLSNMLSSVASKK-IPENLNEWFDAVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ A+ + QN N +++ +K+++L I + + E+ + Sbjct: 122 LADSPNDVGARKVVLEKADLITQNLNDFHETIRRQSDVTNKKLDLGIERVNQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + + +D +DQ + L+ ++SE ++ R N V+ +G TL Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIAELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ Y + I+G + + + GK+ A+L +RD +P ++L + Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKLGAMLTMRDEKIPYLMDELGK 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA + + G + + + ++ + ++ Sbjct: 297 MATAFSYDVNALQSQGLDLRGNIGGLVFTDVNSEVVAKSRVVTSSNS-----TADLEVYI 351 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++++ G + D + + ++ + + + L Sbjct: 352 EDTNKLVGGQYSLQFNGGDYYITRPNGDMSIVPVVGNSISLDGIRIDINNGLQAGERVLI 411 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + I+ Sbjct: 412 RPTRNGAAQMKMATNDPSAIAAQSYEAS 439 Score = 96.3 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 41/334 (12%), Positives = 99/334 (29%), Gaps = 3/334 (0%) Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + K ++ S+ + I + ++ R V + + + Sbjct: 290 LMDELGKMATAFSYDVNALQSQGLDLRGNIGGLVFTDVNSEVVAKSRVVTSSNSTADLEV 349 Query: 208 ---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 T + + G D++ + +++ + I I+ + + + Sbjct: 350 YIEDTNKLVGGQYSLQFNGGDYYITRPNGDMSIVPVVGNSISLDGIRIDINNGLQAGERV 409 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 P A +++ + Q E + + + I+ K Sbjct: 410 LIRPTRNGAAQMKMATNDPSAIAAQSYEASTTFAQGSATFSIDTAGDLREFEVIISPDGK 469 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 +G + +S + N K A + Sbjct: 470 QFAVTDTKGKILLQPQAYPPTGPVTVQGTTFELSAGAIANDKFTANLVPSEGDNGNLLKM 529 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 I + T+L+ N + S + L S++ E ++ GVNL Sbjct: 530 QNIQTNKHLNDGESTVLDIYHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVASISGVNL 589 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE + ++K +Q+Y S++++ + T+L Sbjct: 590 DEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623 >gi|320015457|gb|ADV99028.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 554 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 68/555 (12%), Positives = 145/555 (26%), Gaps = 80/555 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV E L A + + + + ++ +N+ + + + Sbjct: 60 TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145 L++ N +D KTV+ AE + N A ++ Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177 Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 K+ + S L + + + A D +S + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250 G + + T ++ + + T S Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297 Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 I+G A P A Q S+ +++ Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348 A F D + + G+ + + I ++ + Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQVKDK 417 Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ +V+ + + AG D + + TL Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ + GVNL EE L + +Q Y + + Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537 Query: 464 LIMFTDKMLQTLLEG 478 ++ + LL Sbjct: 538 VLQAASTLFNALLSI 552 >gi|315497293|ref|YP_004086097.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415305|gb|ADU11946.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 459 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 74/484 (15%), Positives = 141/484 (29%), Gaps = 29/484 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + + S A+I NI N + Y T + + T S Sbjct: 1 MSISSAMLSGVSALSANSTALAAISNNIANVNTTAYKSVSTSFAANVSSSGSSTYSSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS----ADDHYNNSPTHYISKLRDSLESYSK 116 + + + A+ D S + E Y Sbjct: 61 SASTALSITEAGALQTTTSSLDLAIDGSGFFVVSEGADGSGGSYYTRDGSFSVNDEGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L D++ V + S KI +D +L L+ T Sbjct: 121 NSSGYYLQGWQADSSGNVTAASSVSDLSAIKIPTSSDTPTATTSISLAANLNSATEAYAG 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A+ D+ + I +S + + + + T E + Sbjct: 181 EYDISTGLSMANYDEDEETGVEPDFEIGISVSDSLGKEHTLTLSVLKSETTNEWTAELWS 240 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + Y I ++ N+ + + + A D Sbjct: 241 DDVTGGYGSEGNI----IKSGTITFNEDGTLNEDSLAAFFGAEDLS-------------- 282 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 K IA +S+ L L +T QY + Sbjct: 283 -----QIKIDIAASSDETGALRWTSETGAAAQSLSLSFDDTQGGLTQYATTSEVKSIKAD 337 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + +A + Y D ++ PVA L + N + S Sbjct: 338 GTVFSDLSDVTIADDGTVNAIYEDGTSRVLAQIPVATFVNANGLTAKSGNVYAL--SSES 395 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 S+ L ++ S V+L E + LI ++++Y+ ++K+I +D+M+QT++ Sbjct: 396 GSYTLRTPGSGGAGLLASSSLEASTVDLSSEFTSLITIQRAYSAASKIITTSDEMMQTVI 455 Query: 477 EGVK 480 E + Sbjct: 456 ESKR 459 >gi|86146149|ref|ZP_01064475.1| flagellar hook-associated protein [Vibrio sp. MED222] gi|85836096|gb|EAQ54228.1| flagellar hook-associated protein [Vibrio sp. MED222] Length = 626 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 137/401 (34%), Gaps = 19/401 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53 + N A +Q + NI NA+ + Y R+ + V V Sbjct: 3 SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGVNDPRQYGGQTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ + ++ + M + +++ DS+++ Sbjct: 63 NVRRSWDQFAVKELNLSTTNAANKADTEANLDMLSSMLSSVVSKK-IPENLNEWFDSVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K VI+ A + + N V++ A+K++++ I + + E+ + Sbjct: 122 LADTPNDVGTRKVVIEKAGLLSKTLNEFHETVRQQSDSANKKLDMGIERVNQIAYEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232 + +D DQ + L+ ++S ++ R NN V+ +G TL Sbjct: 182 QRLMVRTP---GPHNDLQDQHEQLVNELSGYTKVTVTPRANNEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + ++G + + + G+I A+L +RD +P ++L Sbjct: 239 ASQL-KMIDGVPDAHQRRLAIVEGKSLKA-ITNRDIDGQIGAMLDMRDEHIPAVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE--TICVNPQYRSNPSF 350 +A + + G + + + + + Y + S Sbjct: 297 LATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKADVAVYIDDTSA 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L+ G K + + + + +S F D + Sbjct: 357 LKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGM 397 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/399 (9%), Positives = 111/399 (27%), Gaps = 6/399 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I + D+ + + L + + + Sbjct: 227 IGNGHTLVSGTEASQLKMIDGVPDAHQRRLAIVEGKSLKAITNRDIDGQIGAMLDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200 + + + + + S+ +N + + ++ R Sbjct: 287 IPAVMDELGRLATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKAD 346 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259 ++ I ++ ++ + Y + + + ++ + + + Sbjct: 347 VAVYIDDTSALKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGMRVEVRNPPE 406 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P A +Q+ Q E + + +A + + Sbjct: 407 LGEKLLLRPTRNFAAQIQMETKDPKDIAAQSYEASTTFAKGTAGFKILAAGQLREFEVIV 466 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + +G + + ++ + N K A Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTPGAVANDKFTANLVPSEGDNG 526 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + + T+L+ N S ++ L +++ E ++ Sbjct: 527 NLRKLQDLQTGKVLDDGESTILDLYHNLNTNTGLKSSTANRLSDIARLEKESAQERIASV 586 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625 >gi|145298491|ref|YP_001141332.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142851263|gb|ABO89584.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 446 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 57/483 (11%), Positives = 125/483 (25%), Gaps = 49/483 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N + + N V Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F + ++ D + + SY Sbjct: 62 GAVAHQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLNENSYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L I+ + + +Q + ++ + + Sbjct: 118 VNNQGHYLQGYEINTDGTPKAVSINATKPIQVPDRAGEPKMTELVE-----------ASF 166 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + ++ +K D + S + I + + + Y V + Sbjct: 167 NLSIESKTKPTDPAAFDPTNSATFAHSTSVTIYDSLGAPHVITKYF---------VRHED 217 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + S ++ + G+ P I +Q+ + L Sbjct: 218 PVTPGTPMTPGTWSMYMYEGDKPIDIASGAPSPGPGIPTGVQMTFTSGGKLDPALTI--- 274 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 P L A GI + Q + + QY S + + Sbjct: 275 ----------PAPPAPIKTVTLGTAAGIINNGADPTQAVEIRLSDVTQYNSPFNVTKLTQ 324 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y ++ +A + L + W + Sbjct: 325 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 382 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I S V+L +L LI ++++ +++ + + QT+ Sbjct: 383 SGDALPGTPNSGTLGSIKSSAVEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 442 Query: 476 LEG 478 L+ Sbjct: 443 LQI 445 >gi|218289685|ref|ZP_03493893.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius LAA1] gi|218240142|gb|EED07326.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius LAA1] Length = 487 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 61/506 (12%), Positives = 157/506 (31%), Gaps = 52/506 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + + + + + NI+NA+ Y + Sbjct: 5 TFSPLYIGLSGLQAMQEAESVVGNNIDNANTPGYAQESVNLVEGHPYPPVPGDGPMIGGQ 64 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + V+V + ++ +D+ + S S + + + + +N + Sbjct: 65 YGQGVSVQSVTRQDSWFYDRQDWQNQSTYQMYSTYSSILTQVQGILS-EPSSNGIQSALD 123 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + ++ S + S + VI + + Q NT ++Q ++++ +I + L + Sbjct: 124 QFFSAWQTLSTDPSNTAARQAVITQGQVLAQTANTVTSQLQTLQSNVLSQINDQFQELEQ 183 Query: 166 FLSELTVVNDAIKFKTASK-----------HDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + EL+ V I + S + ++ LDQ+ ++ ++S++ ++ + Sbjct: 184 YAQELSAVQAQIAAISQSNVGAGGASSSAVENPNELLDQQAAIIDEMSQLANLTLSQNQD 243 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + V G + +P + + + G + S+V G A Sbjct: 244 GTISVSIGPGGSSGTVIPLNALTQASVTEGSNGVLVLSVGSGSNTQTYSLSSVVSGGQIA 303 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + N L+ L + + P Sbjct: 304 GNAQGFTELTGLLNNLNAFTSQLATQINSALGGQTFFDTSPFGVDVKMT----------- 352 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + G + + +++N + + +I Sbjct: 353 ------------SATLALGPGGPPGSSTYVAGDNTYAVNVVNLQTQAQSITWIDGSGNSQ 400 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + T + + + + S + + S+ + GV++ E+ S++I Sbjct: 401 SATGTFDQLLASVVSQVGMTASGVAAGEKTADALLQQSSQLRQSISGVSIDEQASYMIAF 460 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 + +Y + K I ML LL V+ Sbjct: 461 QNAYAAAAKYIATFQTMLNALLNMVQ 486 >gi|304321120|ref|YP_003854763.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] gi|303300022|gb|ADM09621.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] Length = 446 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 61/489 (12%), Positives = 127/489 (25%), Gaps = 52/489 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MS+ + N + + A+I NI N++ Y R P + Sbjct: 1 MSISSSLNAGVAGLATNAVKLAAIADNISNSETIGYKRAVAEFQSLVIDSGPNAYSAGGV 60 Query: 56 RS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDSL 111 R+ L +A + + A Sbjct: 61 RATPYIDVDDQGSLIGTGNATDLAIAGRGLLPVTNQDGAQAVTAERQLLLTATGSFTPDE 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + Y + S L D+ ++ S ++ +R + N+ Sbjct: 121 DGYLRTTSGLFLLGFPADSNGDIGTVSRQSTESLEPVRVNVSNFTATPTENV-------- 172 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + + ++ T Sbjct: 173 GLGINLPAAATEAGATTGAYEITTEYFDNFGRAQVLRVEFTPQPPVSGAPTNNWTAEIFD 232 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + ++ VT +P+ G + S N SA + DS ++ Sbjct: 233 NASGSEVSIGTFDVTFRDDPV-NGGAIESINASSATDPTTSITTTGVYDSTTGTLPVTVE 291 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +V I D Q ++ S Sbjct: 292 SGTQVNIFIGRPNDNAGL--------------------------------TQLAADFSPY 319 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ + G +L + F + PVA + L A N+ + Sbjct: 320 SLTKDGAEIGNLLDFEVDGQGNLDAVFDTGFRRTLYKIPVADVPNLNGLE--AANASAYK 377 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L ++ V++ EL+ LI+ +++Y+ + K+I D++ Sbjct: 378 VSQSSGDLYLWDAGDGPTGEMAGFSLMESTVDVANELTQLIQTQRAYSSNAKIIQTVDEI 437 Query: 472 LQTLLEGVK 480 LQ V+ Sbjct: 438 LQETNSLVR 446 >gi|311992301|gb|ADQ26724.1| flagellar hook protein [Aeromonas hydrophila] Length = 443 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 55/483 (11%), Positives = 128/483 (26%), Gaps = 51/483 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N + + N V Sbjct: 1 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++A+ F + ++ D + + SY Sbjct: 61 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRT----FTRAGAFKLNENSYM 116 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L I+ + + +Q + ++ + + Sbjct: 117 VNNQGNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTELVE-----------ASF 165 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + ++ +K + D + S + I + + + Y V + Sbjct: 166 NLSIESKTKPTSPAAFDPTNSATFAHSTSVTIYDSLGAPHVITKYF---------VRHED 216 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + S ++ + GS P I +++ + L Sbjct: 217 PAAPGTPLTPGTWSMYMYEGNKPIDIAGGSPSPAAGIPTGVKMTFTSGGKLDPTL----- 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + L GI + Q + + QY S + + Sbjct: 272 ----------TVPVDPIKTVALGTTAGIINNGADPTQTLEIRLGDVTQYSSPFNVTKLTQ 321 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y ++ +A + L + W + Sbjct: 322 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 379 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I S V+L +L LI ++++ +++ + + QT+ Sbjct: 380 SGDALPGTPNSGTLGSIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 439 Query: 476 LEG 478 L+ Sbjct: 440 LQI 442 >gi|297584044|ref|YP_003699824.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297142501|gb|ADH99258.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 424 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 117/478 (24%), Gaps = 54/478 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ NN + I NI N + + + ++ Sbjct: 1 MIRSLYSGIGGMNNFQTKLDVIGNNISNVNTFGFKKGRVTF----------------NDL 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L SS Q+ + + ++ S + + Sbjct: 45 VSQQLAGASSP--QEGERGGTNPRQVGLGGSTASIDTINTQGSLQSTGRDLDMAISGDGF 102 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + AD + + + V + I Sbjct: 103 FQVADGGQNFYTRAGNFYLDENGMLVNADGLRLQGYGVGDDGAIDEAAGVGDLFIPAGEQ 162 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +A +D R L + G + E Sbjct: 163 VDPEATSQVDLRGNLN------ADSEIGEERTVRFFITDPLGGEQEIRLLMTKTAENEWD 216 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y++ N I ++ QG G + + R + + L+ + L Sbjct: 217 YSLEYWDNDIEDWDILPDIGQGFFDFSGTEDGVSRGRMN-----LDNLELIVEDLGFIGG 271 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + Q+ S + + + S Sbjct: 272 PW-----------------------EGHEGSLNLNLSNVTQFSSRSTVEVESRNGSSDGT 308 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ + + + + N L + N N S + Sbjct: 309 LESYTVSETGEINGIFSNGEVRLLGQVALVNFNNPSGLSKAGSNLFEV--SNNSGEPQVG 366 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 367 LAGIGGRGSLVGATLEMSNVDLSEEFAEMIVSQRGFQANTRMITTSDEILQELINLKR 424 >gi|120598238|ref|YP_962812.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] gi|120558331|gb|ABM24258.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] Length = 641 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 125/439 (28%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L + S Sbjct: 64 VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFAGVNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ L + + +A++V + N + + +I + EL +N Sbjct: 122 ADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 K I V+++ + G++ AL + RD + ++LD++A Sbjct: 239 TMDTKTGDPFPNELQLTSSIGSQSVAADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L + SN + Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + + Sbjct: 348 GVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + + N I+ Sbjct: 408 ASGDRFIIRPTAGAANGIT 426 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/364 (11%), Positives = 99/364 (27%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + NFN ++ + I +I++ L + ++ Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T + L + + T +G+TL I+ Sbjct: 342 TGNATLGVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFIIRPTA-GAANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQIT 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + D + P + + Sbjct: 461 NRSAANFPVTGSELTIQLDTTAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDST 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + TL + N+ + Sbjct: 521 AAAS---NDRFTFDLSFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 TSVR 641 >gi|15642190|ref|NP_231822.1| flagellar hook-associated protein FlgK [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726550|ref|ZP_01679799.1| flagellar hook-associated protein FlgK [Vibrio cholerae V52] gi|147675062|ref|YP_001217708.1| flagellar hook-associated protein FlgK [Vibrio cholerae O395] gi|153817114|ref|ZP_01969781.1| flagellar hook-associated protein FlgK [Vibrio cholerae NCTC 8457] gi|153820887|ref|ZP_01973554.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33] gi|227082315|ref|YP_002810866.1| flagellar hook-associated protein FlgM [Vibrio cholerae M66-2] gi|229507732|ref|ZP_04397237.1| flagellar hook-associated protein FlgK [Vibrio cholerae BX 330286] gi|229512073|ref|ZP_04401552.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33] gi|229519209|ref|ZP_04408652.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC9] gi|229607236|ref|YP_002877884.1| flagellar hook-associated protein FlgK [Vibrio cholerae MJ-1236] gi|254849320|ref|ZP_05238670.1| flagellar hook-associated protein FlgK [Vibrio cholerae MO10] gi|255747110|ref|ZP_05421055.1| flagellar hook-associated protein FlgK [Vibrio cholera CIRS 101] gi|262167783|ref|ZP_06035485.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC27] gi|298500431|ref|ZP_07010236.1| flagellar hook-associated protein FlgK [Vibrio cholerae MAK 757] gi|9656746|gb|AAF95336.1| flagellar hook-associated protein FlgM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121631003|gb|EAX63382.1| flagellar hook-associated protein FlgK [Vibrio cholerae V52] gi|126512382|gb|EAZ74976.1| flagellar hook-associated protein FlgK [Vibrio cholerae NCTC 8457] gi|126521679|gb|EAZ78902.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33] gi|146316945|gb|ABQ21484.1| flagellar hook-associated protein FlgK [Vibrio cholerae O395] gi|227010203|gb|ACP06415.1| flagellar hook-associated protein FlgM [Vibrio cholerae M66-2] gi|227014087|gb|ACP10297.1| flagellar hook-associated protein FlgM [Vibrio cholerae O395] gi|229343898|gb|EEO08873.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC9] gi|229352038|gb|EEO16979.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33] gi|229355237|gb|EEO20158.1| flagellar hook-associated protein FlgK [Vibrio cholerae BX 330286] gi|229369891|gb|ACQ60314.1| flagellar hook-associated protein FlgK [Vibrio cholerae MJ-1236] gi|254845025|gb|EET23439.1| flagellar hook-associated protein FlgK [Vibrio cholerae MO10] gi|255735512|gb|EET90912.1| flagellar hook-associated protein FlgK [Vibrio cholera CIRS 101] gi|262023848|gb|EEY42547.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC27] gi|297541124|gb|EFH77178.1| flagellar hook-associated protein FlgK [Vibrio cholerae MAK 757] Length = 624 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 121/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ ++ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|152990377|ref|YP_001356099.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] gi|151422238|dbj|BAF69742.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] Length = 533 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 54/538 (10%), Positives = 122/538 (22%), Gaps = 65/538 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 +L F + N I NI N + + + + + Sbjct: 1 MLQSFYTGNSGLNANKTWLGVISDNIANVNTNGFKQERVNFSDLVASSLTTYSSSGAPRN 60 Query: 50 ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 K+ + + + F M + + + Sbjct: 61 KEIGGGAFVAGTIKDFSQGSFKNTNQPLSLALDGEGFF-----MVKNPSADLTYYTRAGD 115 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 R N + L ++D + + + DK +NL Sbjct: 116 FRVDANGDVINPAGLKLQGWMLDETGNIAGAMGSINIPNNLDPKNTDKVAFENPANLDAG 175 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLL--------QKISEIIGISTIVRNNNDMV 218 + +T D T + D I+ + + Sbjct: 176 VDAITKTFDPSDPTTYHYVNTITTYDSLGTSHVLKHYFIKTDINTWRVFTQLDDRAVTYN 235 Query: 219 VYTSDGTTL--------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 T++ L + + P + + T + I + + Sbjct: 236 DGTNEYAALELKFNGKGELTSAQYISQPATQSEAASEAATDDGIFSVTNIPVLPGTIYIT 295 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + ++V I ++ G + + Sbjct: 296 QDQNGNSVTWNDDGSGNIVDIQTGEIKGTISYDDGKITIIGAAGDGNTTGTLTVNYKDFS 355 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + Y N S + G+ + K L Y Sbjct: 356 DTTTANVTDLGAIKTSTINYSDNTSRFLNNGATDTAITEDFKKLTQLDSEFIFYAQQNGA 415 Query: 385 NFIFDPVAGINTNVTLLEYARNS----IGWLEKNR------------------SDSHDLH 422 + + + + N + L + Sbjct: 416 SKGDLMSISVTEDGIIKGTYTNGQVKDVARLAVATFKDKEILVRKGDNLYLPNQQTFTPI 475 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V + I V++ +E LI +++Y + K I +D++LQT ++ + Sbjct: 476 IVPGGVISKIRSGMLEMSNVDISQEFINLITAQRAYQANAKTITTSDQILQTTMDIKR 533 >gi|22126384|ref|NP_669807.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10] gi|45441403|ref|NP_992942.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Microtus str. 91001] gi|51596017|ref|YP_070208.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 32953] gi|108807179|ref|YP_651095.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua] gi|108812477|ref|YP_648244.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516] gi|145598604|ref|YP_001162680.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides F] gi|149366245|ref|ZP_01888280.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|153948415|ref|YP_001401283.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] gi|162421752|ref|YP_001606478.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165925892|ref|ZP_02221724.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165938764|ref|ZP_02227319.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|166010871|ref|ZP_02231769.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166210949|ref|ZP_02236984.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|167401050|ref|ZP_02306553.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420208|ref|ZP_02311961.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425863|ref|ZP_02317616.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467496|ref|ZP_02332200.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1] gi|186895120|ref|YP_001872232.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|218928928|ref|YP_002346803.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92] gi|229896251|ref|ZP_04511421.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A] gi|229897188|ref|ZP_04512344.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897915|ref|ZP_04513066.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229902854|ref|ZP_04517971.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|270486639|ref|ZP_06203713.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294504024|ref|YP_003568086.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|21959370|gb|AAM86058.1|AE013853_6 flagellar biosynthesis protein, hook-filament junction protein 1 [Yersinia pestis KIM 10] gi|45436263|gb|AAS61819.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Microtus str. 91001] gi|51589299|emb|CAH20920.1| flagellar hook-associated protein 1 [Yersinia pseudotuberculosis IP 32953] gi|108776125|gb|ABG18644.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|108779092|gb|ABG13150.1| flagellar hook-associated protein 1 [Yersinia pestis Antiqua] gi|115347539|emb|CAL20448.1| flagellar hook-associated protein 1 [Yersinia pestis CO92] gi|145210300|gb|ABP39707.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides F] gi|149292658|gb|EDM42732.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|152959910|gb|ABS47371.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] gi|162354567|gb|ABX88515.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165913378|gb|EDR32000.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|165922096|gb|EDR39273.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165990215|gb|EDR42516.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166208129|gb|EDR52609.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|166961903|gb|EDR57924.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049439|gb|EDR60847.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055262|gb|EDR65059.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186698146|gb|ACC88775.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|229680301|gb|EEO76400.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|229688956|gb|EEO81021.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229693525|gb|EEO83574.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701174|gb|EEO89203.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A] gi|262361790|gb|ACY58511.1| flagellar hook-associated protein [Yersinia pestis D106004] gi|262366074|gb|ACY62631.1| flagellar hook-associated protein [Yersinia pestis D182038] gi|270335143|gb|EFA45920.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294354483|gb|ADE64824.1| flagellar hook-associated protein [Yersinia pestis Z176003] Length = 554 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 68/555 (12%), Positives = 145/555 (26%), Gaps = 80/555 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50 MS ++ N A + N A +++ NI N Y R++T+ + V Sbjct: 1 MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV E L A + + + + ++ +N+ + + + Sbjct: 60 TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145 L++ N +D KTV+ AE + N A ++ Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177 Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 K+ + S L + + + A D +S + Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250 G + + T ++ + + T S Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297 Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 I+G A P A Q S+ +++ Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348 A F D + + G+ + + I ++ + Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDK 417 Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ +V+ + + AG D + + TL Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + ++ + GVNL EE L + +Q Y + + Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537 Query: 464 LIMFTDKMLQTLLEG 478 ++ + LL Sbjct: 538 VLQAASTLFNALLSI 552 >gi|119477953|ref|ZP_01618053.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] gi|119448866|gb|EAW30108.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] Length = 429 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 62/482 (12%), Positives = 110/482 (22%), Gaps = 64/482 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---------QR 56 FN A + A+ NI NA + R N V Sbjct: 2 SFNTALSGLRAANTDLEVSGNNIANASTIGFKRSRAEFGDVYANSLVSGSNTTGSGVLVN 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 S ++ + +++ F + E + E Y Sbjct: 62 SISQQFDQGNISFTDNSLDLAINGTGFFVVAE------SSGATAYTRAGYFGIDDEGYIT 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L + V + Sbjct: 116 NNSGSTLQGFLPTGTGSGVGG-------------------------------TPADLRVQ 144 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S A D L D S IS N+ D ++ T + Sbjct: 145 SGDLAPSATSAVDLLFNLDARGDAPS----ISPFNPNDADTFNSSTSLTIFDSRGQAQVF 200 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 V + N + Q P G N ++ Sbjct: 201 STFYEKTAVENVWNMHAYISDDAGNLQNVISPAGGAGGA------------NPFFQLTFG 248 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 G + +P +N + + + I + Q+ S+ S + Sbjct: 249 TDGLLTGTNPTGLTIDNWNPQGSNQSSTNGSTAIASDFTINIGPSTQFGSDFSVAAVDQN 308 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ Y + +A + L GW + S Sbjct: 309 GFATGKLTGLEINTTGEVFARYTNGEALILGQVAMALFSNEQGLNPLGE--TGWAQSFES 366 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + I V+L EEL LI ++++ + K I D + Q ++ Sbjct: 367 GEPVVGAPLTGNLGGIQSGALEESNVDLSEELVRLIIAQRNFQANAKTIETADTVTQAII 426 Query: 477 EG 478 Sbjct: 427 NI 428 >gi|258404710|ref|YP_003197452.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796937|gb|ACV67874.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 433 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 53/491 (10%), Positives = 118/491 (24%), Gaps = 69/491 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 M L + + I N+ N++ + T+ + + Sbjct: 1 MGLQGALYTGVSALGATGEAMNVIGNNLANSNTTAFKASRTLFSDLLASDVSSSSGTSQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T V S + + S+ + F + + + Sbjct: 61 GTGVGLASVDTVFSQGGFNPTESSTDLAIEGEGFFKVSD-----PNTGADAYTRAGGFNF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + E + N + +D V N ++ + +NL Sbjct: 116 NDEGFLVNPQGYRVQGYDVDGDGNTVGNLKDIYTDLSGSVPAQETGRASLSTNLNASAEV 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + T++ + + D + + N + V G T Sbjct: 176 GASFDINDPAGTSNFSTSINVYDSLGTSHLAN---VYFTKAGSNAWNYHVTADVGGTNTV 232 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 I F Sbjct: 233 LKSHQIKFTSTG-----------------------------------------------Y 245 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L E+ + + P NV + + N + + QY Sbjct: 246 LKEVDGNSYMNEKGEIPAGQEGNNVITVKNTGNPINWGNGSDGHVFDVEFNLSQYAGQSE 305 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + N + +I Y + +K+ +A N L + + Sbjct: 306 LVSKQQDGFSSGALNGIEVDQEGMVIGSYSNGESKDLAKLGLAKFANNNGLAQVGNSLFE 365 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 N S + I + V++ ++ + +I +++Y +++ I TD Sbjct: 366 --ATNASGLPAIGTPG-AGVGTIRSNALEQSTVDIAKQFTDMITTQRAYQANSRTITTTD 422 Query: 470 KMLQTLLEGVK 480 MLQ ++ + Sbjct: 423 DMLQEVVNLKR 433 >gi|91792664|ref|YP_562315.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91714666|gb|ABE54592.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 455 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 58/483 (12%), Positives = 124/483 (25%), Gaps = 40/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI N + + N VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNGKTAVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+A+ F + + + +Y Sbjct: 62 TQVAQQFSQGSLQFTSNALDLAISGGGFFVTSANIDTSQDQS---FSRAGAFKVDSNNYM 118 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ + V+ I S V+ Sbjct: 119 VDSAGNFLQAFPVDETGSSTSVSLTTTKPVKIPDTAGSPVKTSSIGMQMNLNSGDKVL-- 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D ++ + + + S T + P + Sbjct: 177 -------------------DPAAFDPTDSKTFNKLTSVTMFDSLGESHVMTSYFVKPTNG 217 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ +++ V + +D G A ++ + + Sbjct: 218 SYTGESNWVVFYAVDGKQVDLAGTDVGTYQTDTDGDRIADTPQLAQTAGGWRGSVLKFND 277 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 V + S+ + + +PG I Q +S QY SN Sbjct: 278 VGAYTGSDPAVLTTEALGLPGAGI----LGPGADGTQTLSIAFNNPTQYSSNFEVTELTQ 333 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ +I Y + + L + W Sbjct: 334 NGTTVGRLTNVSIGSDGLVIAKYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLD 391 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 392 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 451 Query: 476 LEG 478 L+ Sbjct: 452 LQI 454 >gi|330445348|ref|ZP_08309000.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489539|dbj|GAA03497.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 467 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 49/488 (10%), Positives = 119/488 (24%), Gaps = 38/488 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 N A + A + + NI NA+ + T + V Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + ++ + + F A+ + ++ NN+ + E Sbjct: 62 STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L ++ V ++ + ++ I K +++S L E Sbjct: 116 NELVNSEGKFLLGYPVNKESNTVASYEAKSMKIDDIFGQPTKSNNIKVS-LNLPNKETAP 174 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVL--LQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 N F D L K++ T+ Sbjct: 175 KNGTFDFNDPDSFSRSTSSTIYDSLGKPYKMTTYYVAKYDPNATPTNANTWEVHQTITNN 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + D G + + Sbjct: 235 SGEERLLKPDPASVPPAYRVIDNTD-PTAPVVTGYRMRFDQNGQPYPGDAGDPTATPPVP 293 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 L + + D + + Sbjct: 294 ATPPTPLNIQMETFASAGIDVGGADPTQTLNMNYDDPTQYASAFEVRKFEDV-------- 345 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + ++ +++ Y + + +A ++ L + W Sbjct: 346 -----DGATTGYLSKVDIDPEGNILASYSNGKDVVVGRVALARVSNEQGLAQLGGTL--W 398 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S SQ F I +++ +EL LI ++++ S++ + ++ Sbjct: 399 NTTQESGQAIWGDASQGSFGAIKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQ 458 Query: 471 MLQTLLEG 478 + Q +L+ Sbjct: 459 LQQNILQI 466 >gi|114046838|ref|YP_737388.1| flagellar hook protein FlgE [Shewanella sp. MR-7] gi|113888280|gb|ABI42331.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-7] Length = 453 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 122/483 (25%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y P + Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ N++ + +D VS G+ + + + + Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTDGDGMADGTGTAQTTGGWKGSVLKF 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +G ++ DP +E + D I QY + + Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQDVTIKFNA--PTQYSAPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLE 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEPNSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|87306349|ref|ZP_01088496.1| probable flagellar hook-associated protein [Blastopirellula marina DSM 3645] gi|87290528|gb|EAQ82415.1| probable flagellar hook-associated protein [Blastopirellula marina DSM 3645] Length = 567 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 56/448 (12%), Positives = 141/448 (31%), Gaps = 21/448 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M+L +++N A NI N + +Y+R + T + V Sbjct: 1 MTLFTSLQQSKNALVAAQIGIQVTGNNIANVNTPDYLRERVIYTPAPTQSYGNLRLGMGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + ++ L S + +S E + + + + ++ S Sbjct: 61 QVEAVVQQVDQFLEERLRNSISDLANGETQESAYLQLEALVG-ELSDTDISTSLNDFLGS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + + ++ + +++ D +K+I+ +++ L+++ Sbjct: 120 INDILNQPEDVSVRNLSVLRGQTLARDISRLYGRAKEVHTDLNKQIKQAATDINSLLNDI 179 Query: 171 TVVNDAIKFKTA---SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I A +K DA DQR L +++ II I + + N V+ + Sbjct: 180 ADLNVKITTLEAGPITKSDAIGLRDQRQRKLTQLAGIIDIKGVEQENGSTSVFLGGEYLV 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + R + + + + + ++ GK+ ++ RD++V F Sbjct: 240 IDGIARQVETKSVAENGFNNVKLTL------AGTDSPILASSGKLAGMITSRDAIVGEFM 293 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 N LD+ A+ L F+ L ++ T Sbjct: 294 NNLDDFAQTLTFEFNRVFSSGQGQTGYQTMTSEFFIDDALSDQPLDQAGLTYTPTNGSFK 353 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + + N + D+ ++ ++ ++ + ++N Sbjct: 354 IFTQNLQTGLKNTVDISVKLNGLPDDTSLQGLADAISEVDGLTASISLDGHLQIDSDSQN 413 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + S + Sbjct: 414 VEFAFGSDTSGVLAALGLGTFFTGTSAS 441 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 105/331 (31%), Gaps = 6/331 (1%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK-ISEIIGIS 208 +++E + F + + AS + RD ++ + ++ + + Sbjct: 241 DGIARQVETKSVAENGFNNVKLTLAGTDSPILASSGKLAGMITSRDAIVGEFMNNLDDFA 300 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + V + G T ++T+ + + S ++ + ++ Sbjct: 301 QTLTFEFNRVFSSGQGQTGYQTMTSEFFIDDALSDQPLDQAGLTY----TPTNGSFKIFT 356 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + L D V + D + L + SE D + + L I ++++ Sbjct: 357 QNLQTGLKNTVDISVKLNGLPDDTSLQGLADAISEVDGLTASISLDGHLQIDSDSQNVEF 416 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFI 387 S + + + + A + I ++ Sbjct: 417 AFGSDTSGVLAALGLGTFFTGTSASTIDIQQVLKEDPSKFAASKNGIGVDTDNAVEMAGF 476 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 D TL +G + ++ S + + +V + GV+L EE Sbjct: 477 LDRPLDSRNGQTLDNVYAQLVGEVTQSASVAKSVAEGYRVFKETLDGQKQGLSGVSLDEE 536 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI ++ + +++LI D++L+ L+ Sbjct: 537 AVNLITFQRQFQAASRLISVIDELLEVLVNI 567 >gi|118588734|ref|ZP_01546142.1| hypothetical protein SIAM614_18549 [Stappia aggregata IAM 12614] gi|118438720|gb|EAV45353.1| hypothetical protein SIAM614_18549 [Stappia aggregata IAM 12614] Length = 617 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 67/440 (15%), Positives = 141/440 (32%), Gaps = 14/440 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 M L + N A +Q NI NAD Y ++ + + Sbjct: 1 MGLTSALNTAVFGITYNQRQLDVTASNIANADTAGYSKKTISANVYFDGNGNVAGLNATE 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + R + F + + +S + L +L S Sbjct: 61 VRRIVNEQIQSDYFNSLADTSYSRQIADFTDRLDDIFGTIDDKSSLSTLAGNLSSALSSL 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + K V+ AE + N S ++ +R +AD + + ++ L+ + ++ Sbjct: 121 VNDPGNYAIQKDVVSAAEAFAREINASYEQIADLRQEADNALASQTDSVNGLLASIEDID 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPR 233 +AI+ T S D D+RD L++++S + I +NN + + T+ G L+ + Sbjct: 181 EAIQSATQSGVSTADMEDERDRLIEQLSGYLDIDVSKNDNNSIAIRTAGGNQLYADGKAS 240 Query: 234 DINFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + F + N + + + ++ G + A ++RD ++ Q QLD Sbjct: 241 TLTFNATHLLQPGQAGNSVMVRTPGGTQYDLIASSKSGSMLATAELRDDILVEAQTQLDT 300 Query: 293 MARVLIGSFSEKD------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +A L +FS + + +S + + V Sbjct: 301 IAAELSLAFSNVNVESTAATVGLDSGFDLDVSALQPGNTITLDYTDSSGNPQTVTLVAVD 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 +P+ L S + V + + Y + + N L + Sbjct: 361 DPTLLPLDDSATANPGDTVFGIDISSGVPATYITNITAALSGTGLLVSNDGSDNLRVLGD 420 Query: 407 SIGWLEKNRSDSHDLHMKSQ 426 + ++ + Sbjct: 421 NTAPTSVESLSANVTVTANS 440 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 46/442 (10%), Positives = 132/442 (29%), Gaps = 7/442 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL-KEMMSADDHYNN 98 + + + + V+ E + +++ S + ++ + Y + Sbjct: 181 EAIQSATQSGVSTADMEDERDRLIEQL----SGYLDIDVSKNDNNSIAIRTAGGNQLYAD 236 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 ++ L + + ++ + + + + S ++R D E + Sbjct: 237 GKASTLTFNATHLLQPGQAGNSVMVRTPGGTQYDLIASSKSGSMLATAELRDDILVEAQT 296 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + L L N ++ A+ F L + + + N + Sbjct: 297 QLDTIAAEL-SLAFSNVNVESTAATVGLDSGFDLDVSALQPGNTITLDYTDSSGNPQTVT 355 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + D TL + + S +++ + Sbjct: 356 LVAVDDPTLLPLDDSATANPGDTVFGIDISSGVPATYITNITAALSGTGLLVSNDGSDNL 415 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET- 337 R ++ ++ + + + + + L+ + + Sbjct: 416 RVLGDNTAPTSVESLSANVTVTANSDQGLGLAIFVDQRVGTDLFTDALEGGGQRLGYASG 475 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I VNP ++ + L + + N A Y A Sbjct: 476 ISVNPDLLADSALLVNYQTTPTPNTSNDPARAKYLSDALSVGTKHYDPGSGIGSASTPFQ 535 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 TL++Y ++ + D+ + + +++ Y + V+L EL+F++++E + Sbjct: 536 GTLVDYVNQTVAFQGNQAEDAATYADSKEALTMNLAIRYEQSYSVDLDAELAFMVQLENA 595 Query: 458 YNISNKLIMFTDKMLQTLLEGV 479 Y + +++ + + LL V Sbjct: 596 YAANARVMQTIKDLFEELLNIV 617 >gi|218708810|ref|YP_002416431.1| flagellar hook-associated protein FlgK [Vibrio splendidus LGP32] gi|218321829|emb|CAV17801.1| flagellar hook-associated protein FlgK [Vibrio splendidus LGP32] Length = 626 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 137/401 (34%), Gaps = 19/401 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53 + N A +Q + NI NA+ + Y R+ + V V Sbjct: 3 SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGVNDPRQYGGQTYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ ++ + ++ + M + +++ DS+++ Sbjct: 63 NVRRSWDQFAVKELNLSTTNAANKADTEANLDMLSSMLSSVVSKK-IPENLNEWFDSVKT 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ K VI+ A + + N V++ A+K++++ I + + E+ + Sbjct: 122 LADTPNDVGTRKVVIEKAGLLSKTLNEFHETVRQQSDSANKKLDMGIERVNQIAYEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232 + +D DQ + L+ ++S ++ R NN V+ +G TL Sbjct: 182 QRLMVRTP---GPHNDLQDQHEQLVNELSGYTKVTVTPRANNEGFNVHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + ++ + ++G + + + G+I A+L +RD +P ++L Sbjct: 239 ASQL-KMIDGVPDAHQRRLAIVEGKSLKA-ITNRDIDGQIGAMLDMRDEHIPAVMDELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE--TICVNPQYRSNPSF 350 +A + + G + + + + + Y + S Sbjct: 297 LATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKADVAVYIDDTSA 356 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L+ G K + + + + +S F D + Sbjct: 357 LKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGM 397 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/399 (9%), Positives = 111/399 (27%), Gaps = 6/399 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I + D+ + + L + + + Sbjct: 227 IGNGHTLVSGTEASQLKMIDGVPDAHQRRLAIVEGKSLKAITNRDIDGQIGAMLDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200 + + + + + S+ +N + + ++ R Sbjct: 287 IPAVMDELGRLATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKAD 346 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259 ++ I ++ ++ + Y + + + ++ + + + Sbjct: 347 VAVYIDDTSALKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGMRVEVRNPPE 406 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P A +Q+ Q E + + +A + + Sbjct: 407 LGEKLLLRPTRNFAAQIQMETKDPKDIAAQSYEASTTFAKGTAGFKILAAGQLREFEVIV 466 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + +G + + ++ + N K A Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTSGAVANDKFTANLVPSEGDNG 526 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + + T+L+ N S ++ L +++ E ++ Sbjct: 527 NLRKLQDLQTGKVLDDGESTILDLYHNLNTNTGLKSSTANRLSDIARLEKESAQERIASV 586 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625 >gi|120598232|ref|YP_962806.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120558325|gb|ABM24252.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 453 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 108/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTVGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + D + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFS----YTRAGAFKVDASNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + L +D T+A+ VQ +S Sbjct: 118 VDSSGNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGSPVKTENVS-------------F 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y + Sbjct: 165 QMNLNAKEGSLDPAAFDPTDPKTYTSVTSMTIYDSLGEPHIMTSY------FVKPTDGAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N E + + +DG + + + Sbjct: 219 NGENNWVAYYAVDGKQVDVDGAAGTYQTDTDGDGVPDG-------TATAETTGGWRGSVL 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G+ Q ++ QY + + Sbjct: 272 KFNSVGVYTGSDPAIVTTETLGVGGAGVLGPGADGTQNLTIKFNAPTQYAAPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLN 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|315122284|ref|YP_004062773.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495686|gb|ADR52285.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 422 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 50/481 (10%), Positives = 123/481 (25%), Gaps = 60/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M +L A + + S + +++ NI N + Y R + S Sbjct: 1 MGILGTMKTAMSGMDAQSNRVSAVSDNIANVNTIGYKRTAVSFSSLVFPPAAGCHTSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119 + +K + + ++ E D + + E + +N + Sbjct: 61 AVSEKDMISSQGSLIHTASNTDLAIQGEGFFVVKDKTGTHYLTRSGNFQINNEGFLQNTA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 +L + NA + + E +R + + + ++ L + V K Sbjct: 121 GYVLQGYPMRNAFSPLVLNSFQGLETINVRNFEPRAVPTTLGSIPANLDKDAKVVVRSKT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ DA +F Sbjct: 181 PKSNGGDA------------------------------------------EYTHKSSFSA 198 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ + + K + + + + + Sbjct: 199 YDTLGSRVIYDLYYTKVEDKKWEVSIFRQDQSSKTIFPYNVTNPLAVIDVSFDPVTGHLA 258 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S K+ ++ + I I + I + +N Q P S Sbjct: 259 ESSPKEISFDDNTSGISHPIKIDISKTTQLVGGFIPQNAVINGQAPGKP------RDFSV 312 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 N+ + + Y + + + + N +L S Sbjct: 313 SKDGNIDVIYDDGTRVPVYRLAIATVPSENSLKICDGN-----------TYLPTRDSGDI 361 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + T V++ EL+ LI+ +++Y ++K+ + L+ Sbjct: 362 SIGYPGNDQRGDVLSGALETANVDIANELTELIEAQRNYAANSKVFQTGSDFMDILISLK 421 Query: 480 K 480 + Sbjct: 422 R 422 >gi|146341929|ref|YP_001206977.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp. ORS278] gi|146194735|emb|CAL78760.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein) [Bradyrhizobium sp. ORS278] Length = 621 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 65/452 (14%), Positives = 142/452 (31%), Gaps = 20/452 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQ 55 M L + A + + + I N+ NA+ YV + + + V Sbjct: 1 MGLSSALATAMSGLRSTQAALSIISSNVANANTPGYVAQNPNQIEVASGGFGSTVMTTGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L +S + + + + + + ++ +L+S S Sbjct: 61 NRQLDLFVQNQLRTETSGGAYADQMANILKQLQSVYGTPGGSGTLETALNNFTTALQSLS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S + A+ V Q N + + +Q +R++ +++I ++ + L ++ +N Sbjct: 121 NNPSNQSAQSVALSAAQGVAQQLNATTKGIQTLRSNVEQDIGDSVTQVNGALKQIATLNT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------- 227 ++ ++S A DQRD + +S+ + I + + N + V+T+ G L Sbjct: 181 QLQGLSSSDPLAATLQDQRDNAIDTLSKYVDIRVVPDSTNGISVFTNSGIQLVGAGLTSE 240 Query: 228 -----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 T+ + + + N +GV + S + G+I A L++RD Sbjct: 241 FTFSSPGTLDATSQYNSNPTKNGVGQLNIKLSNGVSLDVVANSLLNSGQIAADLKLRDQT 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + Q Q+D++A + S+K P F L Sbjct: 301 LVQAQTQVDQLAATFASALSDKTTAGTTVSGPPAGFDVSTTGLLAGNTINLTYTDSSNVQ 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + + G + + N + N T Sbjct: 361 RQVKIVNVNDPAALPLQNATGANPSYVGVDFSLGMASVVTQLNSALGSAHLQFSNPTGTT 420 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 L + + S + Sbjct: 421 LRITDDGTSQATVKAASSTTTVQTLASGNAQL 452 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 4/337 (1%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + ++ D+ + + + + + + D L Sbjct: 287 SGQIAADLKLRDQTLVQAQTQVDQLAATFASALSDKTTAGTTVSGPPAGFDVSTTGLLAG 346 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + I T N V + + S + + + Sbjct: 347 NTINLTYTDSSNVQRQVKIVNVNDPAALPLQNATGANPSYVGVDFSLGMASVVTQLNSAL 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 L+I D + + S + ++ + Sbjct: 407 GSAHLQFSNPTGTTLRITDDGTSQATVKAASSTTTVQTLASGNAQLPVFTDGGA---LYT 463 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G G++ + VNP ++ + L + + + S Sbjct: 464 GAITSSGSQMTGLAGRLNVNPALLNDATKLSTYSTSPATAAGDSTRPDFIFAQLTSATFS 523 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 ++ A T+ Y + + + + L VV + E + +T G Sbjct: 524 YSPTTGLGSAAQ-PFQGTVSGYLQQFVSQQGSASTLATQLSQGQSVVVATLKEKFQSTAG 582 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ E+S LI+V+ +Y + ++ M+Q+LL+ Sbjct: 583 VNMDSEMSNLIQVQNTYAANAHIMSVVQSMMQSLLQA 619 >gi|157961171|ref|YP_001501205.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157846171|gb|ABV86670.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 453 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 47/483 (9%), Positives = 113/483 (23%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + ++A + + NI N + + V Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++++ F + + DH + +Y Sbjct: 62 SQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSEVGSQDHS----FTRAGAFKFDSNNYI 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ + VQ ++ + + ++ Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGSPVKTDQVGIQMNLNAGESTLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D S + I + + + Y + I Sbjct: 178 -------------AAFDPDDPETFNNSTSVTIYDSLGEPHILTSYF-----VRPPNAAHI 219 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ +DG V + + + A Sbjct: 220 GESNWVAF--------YAVDGKPVDLDPAAGEYDIDTDGDGAVDGQASAENAAGWKGAAV 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + Q ++ QY S Sbjct: 272 SFNDTGAYTGSNPAVITTEALGVGGANVLGPGADGSQTLTLDFNNPTQYASPFEVTELNQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + + Y + + L + W Sbjct: 332 NGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGN--TSWKASLD 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|262273529|ref|ZP_06051343.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262222507|gb|EEY73818.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 401 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 48/474 (10%), Positives = 109/474 (22%), Gaps = 74/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 N + S Q +I NI N Y T + + + Sbjct: 2 SINIGLSGLRATSDQINTISHNISNVGTVGYKSSRTEFQDVYAPQFGGGEFGGVEVSNVR 61 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S A E + Y L Sbjct: 62 Q-SFTSGAATSTGRNSDLAINGEGFFMVQQNGQRMYTRNGIFNLDSDGYLVTADGLRLQG 120 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + ++Q AD ++ ++S + V+ K Sbjct: 121 YGVSETGSIQNG---ALTDLQISTADMAAKVTTKVSLGVNLDASAAVIVPKEKK------ 171 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ S TT+++++ + + T Sbjct: 172 -------------------------FDKDDPSTFTCSASTTVYDSLGGEHEITQYFVKTD 206 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + ++ + + + + L++ D + + Sbjct: 207 ENTWSVHYVADGKELDPKNTQLEFDENGKLIKPEDPISVTLTPK---------------- 250 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + I + Q+ S+ S Sbjct: 251 ---------------------NGSATMKIEMDVSEFTQFGSDFSINESKQDGYAPGKLAG 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + Y + + +A L + W E S + Sbjct: 290 WYFDADGSVYARYSNGKTQLQGQLVLARFPNQEGLQQ--AGGTRWTESFSSGTALFGQPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F + + V+L EE+ L+ + +Y + K I + +M+Q L + + Sbjct: 348 TGQFGALRVGAYESSNVDLTEEMVSLMSAQSNYQANAKTIQASQEMVQILFQNM 401 >gi|78355345|ref|YP_386794.1| flagella basal body rod domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217750|gb|ABB37099.1| flagella basal body rod domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 501 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 51/504 (10%), Positives = 124/504 (24%), Gaps = 27/504 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR--------DTMTTISPENVTV 52 M++ + SQ I N+ N + + + T N TV Sbjct: 1 MTIAS-LYIGATGMKTHSQGMQVIGNNLANINTVGFKQSMMLYQDLTSLDVTTGGNNPTV 59 Query: 53 V-TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 +Q+ ++ + + + + + + + R L Sbjct: 60 GMSQQGMGASVAEVRVLHTAGGFEPSNTVTDLAISGKGFFQVAQGDKTHYTRAGNFRFDL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E Y + L I+N ++ Sbjct: 120 EGYLVDPGGYRLQAKPIENGVAGGLQDLQLVAGENGNMVLPPSATTSLSIISNIGVTSDN 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + + + S+ I + N +++ VY DG Sbjct: 180 SASATDPYFSLLQQWNGTAEPPLGDGAYGHSDSIAVYDAAGNKHEVSVY-YDGAPDGPDG 238 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 R + + + + ++ + + G++ + Q Sbjct: 239 QRIVEYVMAMPPSEDGGAGAGTSAAGLLMAGTLTFNANGELINM-TAYTPSGDASQLSSW 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + A + + S + A G + ++ N + Sbjct: 298 QPAAMGADGYPSFTATFAGSGGGAQVMTAGFGMTGTGWTGGGSAASVGSNASQLPGLAGA 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR------ 405 V+ + + NL + ++G +N +++ + Sbjct: 358 ARQARVTTGYEGSSSNLHRTQNGYAQGGLMSLAIDSEGVMSGKFSNGQVVDLYQIPLFRF 417 Query: 406 ---------NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 + S F ++ S V+ E +I ++ Sbjct: 418 TSEFGLRREGGNHFSATRESGEAQEGTAKTENFGSVAASTLEMSNVDASREFVNMIITQR 477 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 + +K++ D MLQ LE + Sbjct: 478 GFQSQSKVVTTADTMLQKALELKR 501 >gi|307609983|emb|CBW99512.1| flagellar hook-associated protein 1 [Legionella pneumophila 130b] Length = 649 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 110/333 (33%), Gaps = 17/333 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54 ++ N A + N + NI N + Y R+ + V+V + Sbjct: 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S Q + + + + D +S + + DS+ Sbjct: 62 IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ ++ + Q FN+ ++++ ++ ++ + + R EL VN Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTLQVTESVKIINRITKELAEVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ + LD RD LL+++S +S + + + V + G L + Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G + + G + L+ +V+ + +MA Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 L +F+ + + + + G Sbjct: 295 IGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPG 327 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 106/375 (28%), Gaps = 17/375 (4%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + ++ + Q A+ + + + + Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSRAS 336 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + A ++ D+ K+S+ I + N ++ SDGT+ T Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + V + I ++ + +N A + ++ L + Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLIPTRGAARDFALEIKDAYEIALASPVKTTASL 454 Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + + P+ Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405 L+G P + + +N D G+ N + TL + Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + + + ++ + + GVNL EE + L+ +Q+Y + KL+ Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 Query: 466 MFTDKMLQTLLEGVK 480 +++++ L + ++ Sbjct: 635 EISNQIMNLLFDIMR 649 >gi|291526374|emb|CBK91961.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM 17629] gi|291526819|emb|CBK92405.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1] Length = 617 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 54/473 (11%), Positives = 144/473 (30%), Gaps = 33/473 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49 S + + ++ + NI N Y R++ Sbjct: 3 STFFGLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEATLQAKDAINVTARYGSVGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLR 108 VTV + + + +D ++S G+ + + D+ + + S++ Sbjct: 63 VTVTSIKQQRDLYYDNKYWENNSCYGRYEQKLYYMEQIQNYFKDNGSSVKGFSSVFSQMF 122 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L++ S+ + I +A+ + FN + + K++ D ++EI + + Sbjct: 123 SDLDTLRSKPSDKTVRNQFISSAQSLCTYFNQMSDNLSKLQDDCNEEIRNNVDKINSISE 182 Query: 169 ELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +++++N I + +A D+R L+ +S+I+ +S + GT Sbjct: 183 KISLLNKEINQIETGTGVEAGSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNF 242 Query: 228 FETVPRDI-------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + + + N+ T + I+ + + + + G +KA Sbjct: 243 SLYINGEKVVEGKDYRKLICESSKTKNNQTDNDDLYKIYWEDTKMEFSATAGTAGGSLKA 302 Query: 275 LLQIRDSVVPI------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 L ++RD + + I + K + + + D Sbjct: 303 LFEVRDGDNLENFKGKVTKADSYSLTVENISIDNIKSLNLPDKDGKITVNNISYSYDSWE 362 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 V + + +V++ +L N + + + F Sbjct: 363 AQVDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNF 422 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + E + + ++ + + + T+ Sbjct: 423 SEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATIN 475 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 10/216 (4%) Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 + A I +P + QL+E R F++ + N + I + Sbjct: 397 LNAGSAINARGIPYYMTQLNEFVRNFSEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYD 456 Query: 332 QGISETICVNPQ-----YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-----DS 381 SE P S+ + + + +V N Y D Sbjct: 457 FSESEAYSKLPDGQTATINSSSNTYYRMTAANFSVNKDVMNDVSLFATSTDYVKTDSCDI 516 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 ++ + + I + + + + + I+ ++ G Sbjct: 517 VDELKKLQSEKTVYRGDKAESFLETIISNVSVDTEKAETYNKLYSNLEQTIANQRTSVSG 576 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V+ EE L+K + SYN+++K+I ++ML L+ Sbjct: 577 VDEDEEALNLVKFQYSYNMASKIISVMNQMLDKLIN 612 >gi|296531742|ref|ZP_06894567.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296267925|gb|EFH13727.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 506 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 52/511 (10%), Positives = 124/511 (24%), Gaps = 36/511 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53 M+ + + + N + + + I NI N+ Y R DT + S Sbjct: 1 MTAINALRTSTSGLNAQAVKLSGISNNIANSSTVGYKRVDTQFESLVLEGSSSGSYALAG 60 Query: 54 TQRSENKNMF-DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + F + E D R Sbjct: 61 VTPRNRVEISKVGQVQRTGVDTDIAVSGNGFLVVNEN---SDSTGKYLATRAGSFRPDAF 117 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + L + V N + + + + + R L Sbjct: 118 GNLVNSAGFYLQGVKLGADGLPVGNLGDNNVDSLSTVNVNNISVASAPTTEMRTWFNLPK 177 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + +D D + + ++ + +S +F++ Sbjct: 178 NSTGYASPPPPADSFVSSIDYYDPTGGTQTLTYRFTPVLPEQDGAPDTSSWTLEIFDSAS 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI-------------------- 272 D+ + T + + S+ +AV Sbjct: 238 GDLASTNLYDTTKRVAALGLQFWSNGTSAGTLAAVWDATAQAAGAAQVAPGFTAPVGSAP 297 Query: 273 ---KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 L + A + + G + Sbjct: 298 LLSGVPNPATYGANASTPATNYGTPDNLAAANVLGTYDAVKGTLTVRVGVQGGFAGTELP 357 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + G Q N + + S L ++A +I + + ++ Sbjct: 358 ITIGTFSNFEGITQLTGNYLPTKIEKNGSAFGLLERVSVADDGQVIATFSNGKSRPIYAL 417 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A L + + + + + L + + V++ EL+ Sbjct: 418 KLAVFPNANGLNPVSGD--AYEMSLAAGAVRLIDPGTGAAGTTNGGALESSNVDIGTELT 475 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI+ +++Y+ + ++ D+ML+ + Sbjct: 476 NLIETQRAYSSNATVVRTADQMLEEATNLKR 506 >gi|220927553|ref|YP_002504462.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] gi|219997881|gb|ACL74482.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] Length = 708 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 125/400 (31%), Gaps = 21/400 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PE 48 + + A++ + + N+ N + R+ + + Sbjct: 5 FSSYEIARSGLKVSERGLFVTGHNLSNVHTPGFTRQQAIIETNPYITQYGKNGKLFQYGL 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + R D V ++ G E + +D + ++K Sbjct: 65 GADIQETRQIRHTFLDIVYRQENTIQGYWDTRSKAFQDVEAIL-NDPMGDGLQGVMNKFW 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DS + SK V +E+V +N ++ K++ D + EI++ I+ + S Sbjct: 124 DSWQELSKEPESLTTRAMVRQRGQELVYYYNHIGNQLDKLQNDLNSEIQVRINEVNNLTS 183 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +N I + + A+D+ DQR++LL ++S + + M V + Sbjct: 184 QIAKLNTQIAAQEINGDKANDYRDQRNLLLDRLSILCDAEVNEMQDGQMDVTLGGYYIVT 243 Query: 229 ETVPRDINFEKMNSYT---VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 +++ + V +G +G++ + ++ P Sbjct: 244 RGQSKNLYVQANAEDGEFFYPKLEGTNIKVNVKSGILKGLMEARGEVPGIKGSTENGTPN 303 Query: 286 FQNQ--LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++ + +D ++ + + I+ + + E I Sbjct: 304 YKADITFAIDVSDGNNFDNLRDSLSSYISELKQSGLDYNIRIITMGATSSVHENIYDKSN 363 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 S + + + N + G + + ++ N Sbjct: 364 IDSMLADITANNLLEADATVNDGSFKGLINELTALNNAPN 403 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 61/394 (15%), Positives = 116/394 (29%), Gaps = 5/394 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ A D + + + S S K D + + A V + Sbjct: 307 DITFAIDVSDGNNFDNLRDSLSSYISELKQSGLDYNIRIITMGATSSVHENIYDKSNIDS 366 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQKISE 203 + AD LE S ++N+ A D + + S Sbjct: 367 MLADITANNLLEADATVNDGSFKGLINELTALNNAPNGFREDAKRYTYVFTNKSINGDSV 426 Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 N + T P K ++ + I G S Sbjct: 427 AADAFIGDAANYVNSLKGMGMKVSVVTDPAYNTNGKPDAASNPEAGWSIITLGTGGSLAD 486 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL-IGSFSEKDPIAGNSENVPGLFIADG 322 ++ G L DS+V ++ L + L I S + A + V + Sbjct: 487 INSDLAGYTSMLKDWNDSLVQTVKDALGNIPPSLNIVSDIKIKLNAMLNRMVNEINSLQM 546 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + N + +S L N+ N Sbjct: 547 SGMTLDGKPGVAFFEAMDNNYPIEMGNLKLSNALLSDSGLNNITASKTAAKGDNTVAKQI 606 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 D + V++ EY RN I L ++ + V N + + GV Sbjct: 607 ANLRDVDILVNSTGRVSIDEYYRNLILELGNGGMEAERIATSQATVVNAVDAQRNAISGV 666 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 ++ EE+S ++K + +Y+ S++++ D M++T++ Sbjct: 667 SMDEEMSNMMKYKFAYDASSRVLNIMDSMMETII 700 >gi|117620743|ref|YP_857343.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562150|gb|ABK39098.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 444 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 126/483 (26%), Gaps = 51/483 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N + + N V Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++A+ F + ++ D + + SY Sbjct: 62 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRT----FTRAGAFKLNENSYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L I+ + + +Q + ++ + + Sbjct: 118 VNNQGNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTELVE-----------ASF 166 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + ++ +K + D + S + I + + + Y E Sbjct: 167 NLSIESKTKPTSPTAFDPTNSATFAHSTSVTIYDSLGAPHVITKYFVR----HEDPAAPG 222 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++++ ID S + + VP G +M Sbjct: 223 TPLTPGTWSMYMYEGNKPIDIAGGSPSPATGVPTG--------------------VKMEF 262 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + + L GI Q + + QY S + + Sbjct: 263 TSGGKLDPTKTVPADPIKTVALGTTAGIITNGADPAQTLEIRLGDVTQYSSPFNVTKLTQ 322 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y ++ +A + L + W + Sbjct: 323 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 380 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I S V+L +L LI ++++ +++ + + QT+ Sbjct: 381 SGDALPGTPNSGTLGSIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 440 Query: 476 LEG 478 L+ Sbjct: 441 LQI 443 >gi|160896079|ref|YP_001561661.1| flagellar basal body FlaE domain-containing protein [Delftia acidovorans SPH-1] gi|160361663|gb|ABX33276.1| flagellar basal body FlaE domain protein [Delftia acidovorans SPH-1] Length = 423 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 105/473 (22%), Gaps = 52/473 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I NI NA+ + + + Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANANTTGFKSSRAEFAEAVASAVG------------- 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S++ + + A+ + ++ + + + Sbjct: 49 -----SASGQNSGIGVNVAAVTQQFRQGPITTTGNNLDVAINGNGFFVVRQPDGSTAYTR 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ V DA L + I KT +K Sbjct: 104 AGNFGLDKQGNLKTVQGDNVMGYPVDATTGKVLAGGQPVPMVFPSGQ---PIAAKTTTKI 160 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D LD R S T Sbjct: 161 DVSLNLDARATPAAGNST-----------------------------ATPPVPATPRATY 191 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + N GV + ++ + L+ S K Sbjct: 192 GTSINVYDSQGVPTPVQMYFEKDAASNTWKVYDGLDDPTASPPKVATLLTTLVFDASGKI 251 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + G++ Q+ S + Sbjct: 252 TSGSPVTAQIKSSNPNAPTPGTINGTAGVTLDFSNVSQFGSKFAVSSLKQDGYTAGALTG 311 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 N+ ++ Y + + +A L N W+E + S Sbjct: 312 INVGNDGSIVATYSNGVTRTEGQLALAAFTNTQGLGAVGDNK--WVETSDSGPALNGTAE 369 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + V+L EL ++ +++Y + + I D++ TL+ Sbjct: 370 SGTFGSLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVFSTLVNL 422 >gi|54294169|ref|YP_126584.1| flagellar hook-associated protein FlgK [Legionella pneumophila str. Lens] gi|53754001|emb|CAH15472.1| flagellar hook-associated protein 1 [Legionella pneumophila str. Lens] Length = 649 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 110/333 (33%), Gaps = 17/333 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54 ++ N A + N + NI N + Y R+ + V+V + Sbjct: 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S Q + + + + D +S + + DS+ Sbjct: 62 IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISAPLQTFFDSIGQL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ ++ + Q FN+ ++++ ++ ++ + + R EL VN Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTLQVTESVKIINRITKELAEVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ + LD RD LL+++S +S + + + V + G L + Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G + + G + L+ +V+ + +MA Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 L +F+ + + + + G Sbjct: 295 IGLAQTFNTQHKLGIDMNSQIGKDFFTDFNSPG 327 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 106/375 (28%), Gaps = 17/375 (4%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + ++ + Q A+ + + + + Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGIDMNSQIGKDFFTDFNSPGQMLKRSRAS 336 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + A ++ D+ K+S+ I + N ++ SDGT+ T Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + V + I ++ + +N A + ++ L + Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454 Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + + P+ Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405 L+G P + + +N D G+ N + TL + Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + + + ++ + + GVNL EE + L+ +Q+Y + KL+ Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 Query: 466 MFTDKMLQTLLEGVK 480 +++++ L + ++ Sbjct: 635 EISNQIMNLLFDIMR 649 >gi|116250500|ref|YP_766338.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115255148|emb|CAK06222.1| flagellar hook protein (agr_c_1012p) [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 115/481 (23%), Gaps = 49/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLS 119 + + I + + +P E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSSTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D V + + I + L V Sbjct: 121 GFQLMGYSYDAGSPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSGANVVSTAAD 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + ++ ++ ++ S + V T + F Sbjct: 181 RPSANSATTTADTKKFSMVAYDSLGNKVMYDFYFTKTSVTTPPPATPATASTWEVAIFRN 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T + S P + ++ Sbjct: 241 ADAATGGTTSFPYSTAAIGTTTLD------------------------------------ 264 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ D + Q I + Q ++ + + Sbjct: 265 ---------FDATGKITNSTGAVTIDDTARTGQMIDMDLTGFTQLGADFAGTGTPNGQAA 315 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +V + G + Y D K P+A + + L + N +S Sbjct: 316 SPVKDVT-VDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 373 VTGFPQTNGLGTIKAGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432 Query: 480 K 480 + Sbjct: 433 R 433 >gi|148358812|ref|YP_001250019.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby] gi|296106857|ref|YP_003618557.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila 2300/99 Alcoy] gi|148280585|gb|ABQ54673.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby] gi|295648758|gb|ADG24605.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila 2300/99 Alcoy] Length = 649 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 53/413 (12%), Positives = 127/413 (30%), Gaps = 23/413 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54 ++ N A + N + NI N + Y R+ + V+V + Sbjct: 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S Q + + + + D +S + + DS+ Sbjct: 62 IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ ++ + Q FN+ ++++ ++ ++ + + R EL VN Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ + LD RD LL+++S +S + + + V + G L + Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G + + G + L+ +V+ + +MA Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------NP 348 L +F+ + + + + G L + + S + Sbjct: 295 IGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 L D + N L D + + + +T+ Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTIT 407 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 105/375 (28%), Gaps = 17/375 (4%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + ++ + Q A+ + + + Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTAS 336 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + A ++ D+ K+S+ I + N ++ SDGT+ T Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + V + I ++ + +N A + ++ L + Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454 Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + + P+ Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405 L+G P + + +N D G+ N + TL + Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + + + ++ + + GVNL EE + L+ +Q+Y + KL+ Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 Query: 466 MFTDKMLQTLLEGVK 480 +++++ L + ++ Sbjct: 635 EISNQIMNLLFDIMR 649 >gi|255322686|ref|ZP_05363830.1| flagellar hook-associated protein FlgK [Campylobacter showae RM3277] gi|255300247|gb|EET79520.1| flagellar hook-associated protein FlgK [Campylobacter showae RM3277] Length = 617 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 58/441 (13%), Positives = 131/441 (29%), Gaps = 27/441 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + + + + A Q + NI NAD+++Y R+ + + V Sbjct: 4 IFSSLHIGVSGLDAAQTQITTTGHNITNADSEHYTRQRVVQSAREPFHDMPGDIGTGTKV 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L + + + D + + ++ Sbjct: 64 DTVVRVHDEFTFARLRTSNINLESSEYKKQILEEISQRF-PDLQSVGIGRDLQNYFNAWN 122 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N +E ++++A + + N + + KI+ D D +IE+ ++ + ++ ++ Sbjct: 123 NLASNPTEGSQKVNLLNSAATLSNSINKAHDMLTKIQKDVDSQIEVAVNEINKYAKQIAQ 182 Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + A+D D+RD L +S+I GIS + + + Sbjct: 183 INKEIVRVESVGTTRANDLRDKRDQLELAMSKIAGISVFKGQLQSNNIDPTVTDMGTKHQ 242 Query: 232 PRDINFEKMNSYTVTSESNPIFID-----------GVVVSSNQGSAVPKGKIKALLQIRD 280 F ++ T + D + + GK+ A L +R Sbjct: 243 INISGFNIVDGTTYHPLTVDRISDKSDFKGVFFERDDSKKVDLNGRISGGKLGAALDLRG 302 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISE 336 V D + I + + N N A D + + Sbjct: 303 RRVDDNGEFQDGTIQKYIDNLNTFAKGIINETNNIYARSAVENAVTDELDGLSDSRTLMN 362 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + G + N+ D + N D N+ Sbjct: 363 FNDDIKHGSFDVVVYNNQGQEVARKTININASTTINDNTRGNSIVRDFNSDTDDNGDNNS 422 Query: 397 NVTLLEYARNSIGWLEKNRSD 417 + +Y + + + Sbjct: 423 LNDVDDYFQANYQYDATTGKG 443 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 66/422 (15%), Positives = 132/422 (31%), Gaps = 25/422 (5%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH--YISKLRDSLESYSKNL 118 ++F L +++ + + + D P IS D + + Sbjct: 219 SVFKGQLQSNNIDPTVTDMGTKHQINISGFNIVDGTTYHPLTVDRISDKSDFKGVFFERD 278 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + ++ + R V D I+ I NL F + + I Sbjct: 279 DSKKVDLNGRISGGKLGAALDLRGRRVDDNGEFQDGTIQKYIDNLNTFAKGIINETNNIY 338 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 ++A ++ D+ D L + + I + D+VVY + G + Sbjct: 339 ARSAVEN---AVTDELDGLSDSRTLMNFNDDIKHGSFDVVVYNNQGQEVARKTININAST 395 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +N T + +S+ + + + V Sbjct: 396 TINDNTRGNSIVR------DFNSDTDDNGDNNSLNDVDDYFQANYQYDATTGKGTFGVTA 449 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + +A + I + + + + V + NP L+ + + Sbjct: 450 KRNAGEYSVAFVDKGTNFPGIIGVNRVFEGGNA----KNMSVKSELMENPHKLKAYSNPT 505 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 G ++ N K IF + ++ Y R L + Sbjct: 506 P----------GNNEVANDMVQMQYKKIIFYSDKHADKEESVEGYYRYITTDLASQTQTN 555 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +DL+ + + Y + GVNL EEL+ LI+ + SY + K+I +KML TLL Sbjct: 556 NDLNDANTAIHKVAMSEYQSVSGVNLNEELTNLIRFQSSYGAAAKIITTVEKMLDTLLTL 615 Query: 479 VK 480 + Sbjct: 616 KQ 617 >gi|329895981|ref|ZP_08271239.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC3088] gi|328922062|gb|EGG29425.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC3088] Length = 1003 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 116/341 (34%), Gaps = 17/341 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + N Q A+ NI N + + Y +++ T S Sbjct: 1 MSDFLSIGASAINVYRQAIATTSNNISNVNTEGYSKQEVKITESYPTQIANYYLGTGAFT 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + ++ L +S + + + + N + I ++ + Sbjct: 61 GSVQRSYDEFVERSLRDSASDLDATTPFIEYTQRIVDIMGSETSN--LANAIDAFFNANQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S + L V+++ E+ FNT + +V + A++ ++ +S + +L Sbjct: 119 LLSVEPASIPLRNEVLNSGSELASRFNTLSAQVDSVAAESKAKVNSTVSQINGLADQLLA 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---GTTLFE 229 VN + K+ +DQRD++L+K++ ++ I +N ++ V G + Sbjct: 179 VNKQLGRKSDVTKQPPQLMDQRDLILRKMASLVTIGVNESDNGEVSVNLGGPGRGFVFVD 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +S +S+ + ++ LL R VV + ++ Sbjct: 239 SRGTQRVGIANDSADPSSDVQLVLDPRGKKQPIPVLNGG--ELGGLLAFRSEVVAVVRDG 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 LD +A + +E + G + D Sbjct: 297 LDHLAVEFAANVNETHRQGVDLRGSFGGDVFSIAPSYDIST 337 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 41/430 (9%), Positives = 109/430 (25%), Gaps = 17/430 (3%) Query: 43 TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNN 98 + + +S D + + +RL+ + + + + + + Sbjct: 550 FNTTAAYSSAYLNKSGTDAYLDNAIRLGAIGFRTERLVDQIDPITGSLITESVAFEAAIS 609 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S I + L + ++A + + +AD+ Sbjct: 610 SGAIPIYENTSGASEDYIADGTLSLNGNALGPLTLTNGEVLSAATVKEWLTDEADRLGIS 669 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 +++ + ++ + + + + D ++ I+ + + Sbjct: 670 DVTIEASNTLIVNEIDPSKTLEINGESISFDPSVTMAEMVDIINASTNDTNVRAEWLSDS 729 Query: 219 VYT--------SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + + L T YT V ++ G G Sbjct: 730 SFKLVNAAGHAGENIVLGGTDSTTALNLSTGVYTGRFSIASAEQSEVALTIASGQPSDMG 789 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 ++ I + + +G+ + + L A + + Sbjct: 790 RLGFYTGIYSDQPLNEELAVFVTGTGAVGASITNSRMTAAEDTEQQLPAAPYKLNFTAES 849 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I++ + + + K G + N Sbjct: 850 VYTITDIATDTVVATRAFEYGKPIEYRGTSISFEAKPSKGDEFFVEANSSPAGNNKNLLA 909 Query: 391 VAG-----INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + I + T E + + + S +VV++ S GVNL Sbjct: 910 LMEWSKRPIISGQTFTEAYLDLVTGVGSRSEMSELRQEALKVVYDQAYNSREQASGVNLD 969 Query: 446 EELSFLIKVE 455 +E + LI+ + Sbjct: 970 DEAANLIRFQ 979 >gi|167623361|ref|YP_001673655.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167353383|gb|ABZ75996.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 453 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 47/483 (9%), Positives = 110/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + ++A + + NI N + + V Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++++ F + + DH + +Y Sbjct: 62 SQVAQQFHQGSMAFTNNSLDMAINGGGFFVTSSEVGSQDHS----YTRAGAFKFDSNNYI 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ + VQ + + + ++ Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGSPVKTDSVGIQMNLNAGESTLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D S + I + + + Y Sbjct: 178 -------------AAFDPDDPDTFNNSTSVTIYDSLGEPHILTSY------FVRPPNAAH 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + P+ +D N + + A Sbjct: 219 TGESNWVAFYAVDGKPVDLDPAAGEYNVDTD-------GDGTVDGKANAENAAGWKGAAV 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + Q ++ QY S Sbjct: 272 SFNDTGAYTGSNPAVIKTEALGVGGANVLGPGADGTQTLTLDFNNPTQYASPFEVTELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGN--TSWKASLD 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|113969606|ref|YP_733399.1| flagellar hook protein FlgE [Shewanella sp. MR-4] gi|113884290|gb|ABI38342.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-4] Length = 453 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y P + Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ N++ + +D VS G+ + + + Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTNGDGTADGTGTAQTTGGWKGSVLKF 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +G ++ DP +E + D I QY + + Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQDVTIKFNA--PTQYSAPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLE 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEPNSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|52841457|ref|YP_095256.1| flagellar hook-associated protein FlgK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628568|gb|AAU27309.1| flagellar hook associated protein 1 FlgK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 649 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 53/413 (12%), Positives = 126/413 (30%), Gaps = 23/413 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54 ++ N A + N + NI N + Y R+ + V+V + Sbjct: 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPITSNRYAGSYIGAGVSVAS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S Q + + + + D +S + + DS+ Sbjct: 62 IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ ++ + Q FN+ ++++ ++ ++ + + R EL VN Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQLTESVKIINRITKELAEVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ + LD RD LL+++S +S + + + V + G L + Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQR 235 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + G + + G + L+ +V+ + +MA Sbjct: 236 DLL-VGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------NP 348 L +F+ + + + + G L + + S + Sbjct: 295 IGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 L D + N L D + + + +T+ Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTIT 407 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 43/375 (11%), Positives = 105/375 (28%), Gaps = 17/375 (4%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + ++ + Q A+ + + + Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTAS 336 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + A ++ D+ K+S+ I + N ++ SDGT+ T Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + V + I ++ + +N A + ++ L + Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454 Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + + P+ Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFIPNTNNVIQIP 514 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405 L+G P + + +N D G+ N + TL + Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + + + + + ++ + + GVNL EE + L+ +Q+Y + KL+ Sbjct: 575 NLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 Query: 466 MFTDKMLQTLLEGVK 480 +++++ L + ++ Sbjct: 635 EISNQIMNLLFDIMR 649 >gi|32476538|ref|NP_869532.1| flagellar hook-associated protein [Rhodopirellula baltica SH 1] gi|32447084|emb|CAD76893.1| probable flagellar hook-associated protein [Rhodopirellula baltica SH 1] Length = 584 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 61/471 (12%), Positives = 135/471 (28%), Gaps = 34/471 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L +++ + A + NI NA+ + Y+R+ T + V Sbjct: 23 MGLFGTIQQSKGALDAAQIGLQVVGNNIANANTEGYIRQRLEQTPAVAYRQGNLIQGHGV 82 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + +A L S E + D S ++ Sbjct: 83 RATGVVQVIDQQLAERMFNAKTAAAGADSLSSAYGQLETL-ITDLDGGGLNEQFSLFNNA 141 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S ++ + VI E + + +++ + E++ + + R + Sbjct: 142 LHDLSTQPNDAATREFVIIQGEALATSMKQIRTRAGELQDGWNAEVDEAATQINRLTERI 201 Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I DA DQR L++++ + I+ + + ++ V+ + Sbjct: 202 AQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASGNVSVFVGGDYLI 261 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + R++ ++Y + + I V ++ GK+ A ++ R V + Sbjct: 262 ADGNRREV----YSAYDEDAGGLEVRI----VDTDAPLKAKGGKLGAAIEARGGVFGDYV 313 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------KLCQGISETI 338 LD+MA LI + L ++ + I Sbjct: 314 ENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSFDFNI 373 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + + + +A + + + Sbjct: 374 VDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSATSKF 433 Query: 399 TLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 T E + N S + VV + I + G+N Sbjct: 434 TFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNGGINADT 484 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 41/411 (9%), Positives = 109/411 (26%), Gaps = 17/411 (4%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 A + + + + T + LE + ++ + + Sbjct: 190 AATQINRLTERIAQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASG 249 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIEL-EISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + V ++ + +++ + D++ E+ + A Sbjct: 250 NVSVFVGGDYLIADGNRREVYSAYDEDAGGLEVRIVDTDAPLKAKGGKLGAAIEARGGVF 309 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D+++ D + + + T VP + + Sbjct: 310 GDYVENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSF 369 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + N + G ++S+ + + G I + + D Sbjct: 370 DFNIVDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSA 429 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 L+ + I VN + + L Sbjct: 430 TSKFTFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNG----------G 479 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + D ++ N ++ +I L + S Sbjct: 480 INADTNTLYNLLDIVDEPLDEL------GNRSIRGMHEQAISTLGREISVQKSATDGLND 533 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + + GVN+ EE +I ++++ S+++I +ML LL Sbjct: 534 LYASLQSQHLAITGVNIDEESIKMISYQRAFQASSRVISTAAEMLDILLAI 584 >gi|224373490|ref|YP_002607862.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH] gi|223589300|gb|ACM93036.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH] Length = 727 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 54/429 (12%), Positives = 129/429 (30%), Gaps = 36/429 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M++ F+ A NI NA N +YVR + + V Sbjct: 1 MAISTSFSTALTGLKAHQTAIDVTSNNISNASNPDYVRERAVFSTLNPINSIPGDIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + S+ + + D +N + ++ Sbjct: 61 QISSIYRITDTFLFNRYTSTSATFANLDTQEQYLKEIATYF-PDVTDNGLYKDMEDFFNA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++++ N ++ + + + + N T +++ I+ + + +++ + ++ Sbjct: 120 WQTFASNPNDGAVKVDLAAKTQALADNIKTLKGKLEDIQKSINDSLNSKLTEANNIIKQI 179 Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N I A+ +A++ D+RD L +++ E++ + + T E Sbjct: 180 AELNKEITAHEANNESNANELRDKRDALEKRLKELLDVKVFKSGVTSQDAQGAVTTDYEE 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS---------NQGSAVPKGKIKALLQIR- 279 + + + E + + G + + +V G+I ALL +R Sbjct: 240 DYQISLGGYPLVDNSTYHELSIESLSGNPMIGIEKQDYSVVDITKSVTGGEIGALLNLRG 299 Query: 280 ----------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + LD +A LI S + + + + D Sbjct: 300 TDFDKEGNPTNGTLGNLMTSLDSLANGLIRSVNSIYSYSAQESVETDVISSPNTISPDLT 359 Query: 330 L----CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + I +P N + +K D IN + N Sbjct: 360 DVSLSSLYNNYKILKSPVRDGNLILNVYDDQGNLNTATEIKVAVSADDSINDVIQNINNE 419 Query: 386 FIFDPVAGI 394 + + Sbjct: 420 LTNAGITDV 428 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 66/439 (15%), Positives = 138/439 (31%), Gaps = 22/439 (5%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 +P N T+ + ++ + ++ + +S + + + +S Sbjct: 307 NPTNGTLGNLMTSLDSLANGLIRSVNSIYSYSAQESVETDVISSPNTISPDLTDVS--LS 364 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQ-NFNTSAREVQKIRADADKEIELEISNLR 164 L ++ + + + L V D+ + A D + I E++N Sbjct: 365 SLYNNYKILKSPVRDGNLILNVYDDQGNLNTATEIKVAVSADDSINDVIQNINNELTNAG 424 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST---IVRNNNDMVVYT 221 E +VN +KF +S + +D Q + + I N+ + + Sbjct: 425 ITDVEAKLVNGQLKFVNSSDSSETSKILVKDDGAQLFTALNQIEYQPLNQVNDTQLPLPL 484 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 +G D N + TV +S + P + + Sbjct: 485 KNGDFDIVVYDSDGNAIAKRTITVNMDSKDPKYSTIE-GILAQINTPGIDDNGDNNLNND 543 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 V +Q + +L + + +++N K D I + Sbjct: 544 VDDYYQAEFINGKLILSKKTDQNTYVGLDNDNADFGGAFGINKFFDGNNA----SNIQLR 599 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + +PS ++ + +G + N N F V G + T+ Sbjct: 600 QELQDDPSLIK----------ASKTPNSGDNTIANSVLQLQYDNINFY-VNGKTQSNTIY 648 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + R L +Q + IS Y + GVN+ EEL L + ++ Y + Sbjct: 649 GFYRGLTADLANQTQIVSSKKESTQTLLTSISNEYYSLSGVNIDEELVNLEQYQRGYQAN 708 Query: 462 NKLIMFTDKMLQTLLEGVK 480 K+I ++ML L + Sbjct: 709 AKVITTINQMLDALFSIKQ 727 >gi|292492363|ref|YP_003527802.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] gi|291580958|gb|ADE15415.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] Length = 425 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 120/483 (24%), Gaps = 70/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55 FN + + N AS + NI NA+ + R + + Sbjct: 2 SFNTSLSGLNAASSDLDVVSNNIANANTTGFKRSRAEFADIFAVSSFGSPKTAVGSGVLL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L + + + F AL ++ ++ + + Y Sbjct: 62 NRAAQQFDQGNLDFTQNILDLAVSGRGFFALSPNLTNNEL----VYSRAGAFSINKDGYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L ++ V + S++ V+ + + ++S ++ ++ Sbjct: 118 VNGAGQFLRTYPVNQDGTVTASSLESSQPVRLPTSAGTPQATSQVSIGANLPADAASLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D S + + N++ +Y + +T + Sbjct: 178 -------------ANFDPLDADTFTASTSTTVFDSLGNSHISTLYF-----VKDTNSPNQ 219 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + G + Sbjct: 220 WAVYNALDGALVNVSGGTAGAGGIQYGTLNFDSSGGLMGT-------------------- 259 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 P + + + N + ++ Q S + Sbjct: 260 ----------------TPSPLVTDPIVLGNGANDMTLTLNFPSTNTTQVASPFNVTALDQ 303 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 +++ + ++ + N +A L + N W Sbjct: 304 DGFTSGRLTGLDISETGVIRANFSNGQNLALGKVALAQFPNEQGLRQLGNN--SWAGTID 361 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I + V+L EL LI ++++ + + I + ++ Sbjct: 362 SGAAIAGEAGNGSFGLIQGGALESSNVDLTAELVHLITAQRNFQANARAIETASTLTDSI 421 Query: 476 LEG 478 L Sbjct: 422 LNI 424 >gi|170725961|ref|YP_001759987.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC 51908] gi|169811308|gb|ACA85892.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC 51908] Length = 637 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 48/408 (11%), Positives = 121/408 (29%), Gaps = 21/408 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + N A+ + Q A NI NA+ + Y R+ + Sbjct: 1 MGM-DLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLDNQRLGGNFFGSGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + + L + + + + Q + + + S ++ L Sbjct: 60 YISDVKRIYNDYAARELRIGQTTVSEAQATQIKMGELDQLFSQ--IGKSIPQGLNDLFAG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S + + + V+ +A + + N + + +I + +EL Sbjct: 118 LNSLADLPDDIGIRNNVLGSAGHLASSLNQMQAHLDGQMKQTNDQIAGITDRINEIGNEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + + LD++D L+Q++S+ ++ I + + L Sbjct: 178 GHINRELMKSQ---GEDMSLLDKQDALIQELSQYSQVNVIPLDTGAKSIMLGGAVMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + G++ AL + R+ + Q ++ Sbjct: 235 EVSMAIGTTAG--DPFPNESRVTSSAGAQTLIIDPSQMGGQLGALYEFRNETLVQAQLEV 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A + +F++ + G I I D D + + +N Sbjct: 293 GQLALGVADAFNQAQSQGFDLSGALGQNIFTDINDPDMAVGRVGGFGTN---TGNANLRV 349 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D S +++ A + + + Sbjct: 350 NIDDTSALTGGSYDLTFTAPGTYELTDINTGVVTPLTLNGSQLDGGDG 397 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 45/412 (10%), Positives = 113/412 (27%), Gaps = 23/412 (5%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +M + + + + + L ++ + + + Sbjct: 229 VMLVSGEVSMAIGTTAGDPFPNESRVTSSAGAQTLIIDPSQMGGQLGALYEFRNETLVQA 288 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + + S+ ++ A+ + + D R + + Sbjct: 289 QLEVGQLALGVADAFNQAQSQGFDLSGALGQNIFTDINDPDMAVGRVGGFGTNTGNANLR 348 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + + T L T P +N+ VT + + Sbjct: 349 VNIDDTSAL---TGGSYDLTFTAPGTYELTDINTGVVTPLTLNGSQLDGGDGFSIHIDSG 405 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +IR S +++ I + K + + I ++ N Sbjct: 406 AFVDGDKFEIRPSAGAAAGIKVEMTDPKGIAAAGPKITAGTANSGNTEIEILSIDRNNVN 465 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN------------ 376 G T ++P + F G VS + + + Sbjct: 466 LPLTGSELTYQIDPVANTFTVFDASGTLVSAAAPYTPPTITSNGFSFDVNTTSTSTESFT 525 Query: 377 --------HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 ++ + + + + TL + + + + ++ V Sbjct: 526 FDFTFAEGDNSNAVSMAQLSEAKLMNSGGSTLTDVYEGTKLVVGGKAKAASVAVGSAEAV 585 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F + GVNL EE LI+ +Q+Y S +++ ++ TL V+ Sbjct: 586 FTQAYNRVQSESGVNLDEEAGNLIRFQQAYQASARIMTTASEIFDTLFSSVR 637 >gi|118444200|ref|YP_877983.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] gi|118134656|gb|ABK61700.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 485 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 43/493 (8%), Positives = 112/493 (22%), Gaps = 23/493 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60 +L + + NI N + V Sbjct: 1 MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQS--FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + K + G ++ + + L +S Sbjct: 61 GVNGKQVGLGVQVAGIDTVMSQGMMQPTSRNLDVAMDGTGYFIVAKGALPESNAGGIAVS 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL----RRFLSELTVVN 174 + T + + +D + + I+ N Sbjct: 121 ESEHTMSGGAFQVNYTRDGSFTLDHQGNLLTSDGYRVMGYAINEKDSTGNATGDVSIDYN 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ +I + + + ++ +M++ D Sbjct: 181 ANGAVNFVNADGEFGLKASNTLVPLRIPDSVHMKATTKDKQNMIITNGDKILFDNDGDAT 240 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ + V V + GK K + + + E+ Sbjct: 241 NGIQGFPEISLDDTFKG--KENVKVEIKYDTKDKAGKDKGWIIFLNGKKTFLEANASEID 298 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I A +++ L I D +T +Y+ + + Sbjct: 299 DAAIDGVDAALLSASEKKDIKELLNGSKITITDPDPNTTNIDTDDKKAKYKWSFTL---- 354 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + D A L + +N + Sbjct: 355 -QPECDKKLRSFAIEKDGLVKGVLDDGTVTALGQIATASFKNQEGLKKEGKNLYSNTANS 413 Query: 415 RS-------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + V+L E+ + +I +++ S K+I Sbjct: 414 GVPTVRSGLGTPKNLDNGDG-YGEMLQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMIST 472 Query: 468 TDKMLQTLLEGVK 480 D++LQ ++ + Sbjct: 473 GDEILQDIINLKR 485 >gi|260888523|ref|ZP_05899786.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC 35185] gi|330838173|ref|YP_004412753.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC 35185] gi|260861720|gb|EEX76220.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC 35185] gi|329745937|gb|AEB99293.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC 35185] Length = 571 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 47/427 (11%), Positives = 124/427 (29%), Gaps = 21/427 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVTVVTQR 56 N ++ NI NA+ + Y R+ + V + Sbjct: 2 VRGIYNNQLSLDTVGHNITNANTEGYSRQRVNPAATRPLEQGGMFGGLFVGTGVDSESLT 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 DK + + Q E + +D + + K + S Sbjct: 62 RARDFFADKQYWQEEATESYAKYRQKNYDKIEAVF-NDSKTKGLQNAMHKFYSAWNDLSV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S+ +V+++ ++ SA+ VQK +E++ ++ ++ ++ +N Sbjct: 121 YASDPAKRVSVVESGKQFADRLEESAQNVQKQLDLVYREMDTQVKDVNEITQKIVELNKN 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I A+ A+D D+RD+L+ K+S + + +N + + + + ++ Sbjct: 181 ISLAEANGAMANDLRDKRDLLVDKLSGYMSLHVYEMDNGMYQIVSGGASIVNGISRLEL- 239 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 KM+ + +N G ++A + + ++L +A Sbjct: 240 --KMDGPVENKRYGVNDYSLIFKDTNTLFVPGNGTLQAAVDSIKED-KAYMDKLANIAAT 296 Query: 297 LIGSFSEKDPIAG--NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + F+++ + + L + S S + Sbjct: 297 FMTQFNDQHRAGAGIDKDKTSNLNFFGRNDKYYVWDKERQSLLAAKVTGTGSTTAGSPPV 356 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + L + + + + +++ Sbjct: 357 TTHTTTLSTTPGDTEELQGLEIIKAMKVSAELVTQNGELKVAARGFGDNSDAKNSYVQNF 416 Query: 415 RSDSHDL 421 + + Sbjct: 417 SYSNSTV 423 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 43/382 (11%), Positives = 104/382 (27%), Gaps = 9/382 (2%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ---NFNTSAREVQKIRADADKEIE 157 ++ + + V + + Q + + ++ D +E Sbjct: 187 NGAMANDLRDKRDLLVDKLSGYMSLHVYEMDNGMYQIVSGGASIVNGISRLELKMDGPVE 246 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + N + A D + + + K++ I N+ Sbjct: 247 NKRYGVNDYSLIFKDTNTLFVPGNGTLQAAVDSIKEDKAYMDKLANIAATFMTQFNDQHR 306 Query: 218 VV--YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 D T+ R+ + + + + + G + + + Sbjct: 307 AGAGIDKDKTSNLNFFGRNDKYYVWDKERQSLLAAKVTGTGSTTAGSPPVTTHTTTLSTT 366 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + +++ L+ E A +++ Sbjct: 367 PGDTEELQGLEIIKAMKVSAELVTQNGELKVAARGF-GDNSDAKNSYVQNFSYSNSTVPP 425 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + L N+ N+ + Y + Sbjct: 426 NITGTGTVVHTTSDMNGTADGSNAVLLTNIFNMEQKDTGLTIYKN---PTAGSPTETRPT 482 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 V+L Y + L + + Q V I ++ GVN EELS +IK + Sbjct: 483 GTVSLNNYYNSVTSALGIDSNAMDTKVKFQQDVMTQIEAWRTSVSGVNWNEELSNMIKFQ 542 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 Q Y+ + + D+ML L+ Sbjct: 543 QGYSACARCMTTMDEMLDRLVN 564 >gi|328542111|ref|YP_004302220.1| flagellar hook-basal body protein [polymorphum gilvum SL003B-26A1] gi|326411861|gb|ADZ68924.1| Flagellar hook-basal body protein [Polymorphum gilvum SL003B-26A1] Length = 545 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/546 (11%), Positives = 141/546 (25%), Gaps = 70/546 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVT 54 MSL + + ++I NI N + Y T+ + + Sbjct: 1 MSLFGALSTGVSGVIAQGSSLSTISNNISNLNTPGYKGSRTLFSHMVTGGGRPGTPVSGS 60 Query: 55 QRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 S + + S + + F + + + S ++ + Sbjct: 61 VASLDQRDLTAQGAIINTSRPADLALVGKGFFVVTDSPF-VGPETSYFYQRTSSFSENTQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-------ISNLRR 165 Y + L D + E++ + + E+Q R +A EL+ + + Sbjct: 120 GYLVSSQGLHLQGWRTDASGEIINPASVESIELQSSRIEATATRELKMGINLTPVEGVYA 179 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + T+++ + ++ N+ +++G Sbjct: 180 LETGSTLLSQLETIAGDLNTADYSVATSLFDAQGNRRDVDVFFMKAGANSWRWAMSTNGA 239 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG--------------- 270 +F + + G + VP G Sbjct: 240 NIFGGSAGSPEIIGSGDLRFNDDGSLKSYTGSNLDIAWTGGVPVGDISVNFGSATGGADF 299 Query: 271 ---KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 I L+ D ++ + N A ++ + + N + + + Sbjct: 300 DPASITGDLEFSDGIIDLTLNDRHSNAPAVLAGSYTVEAMGANVLQITEPDGSTFTATVP 359 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 T +P + + V +G + + Sbjct: 360 ADAAIR-QITFGNGVTMTLSPQWTYPAAGLLGTIDATVVEPSGNGSGADGIVQYASTYNT 418 Query: 388 FDPVAGINTNVTLLEYARNSIGWL-----------------------------------E 412 F+ + L E++ + G++ E Sbjct: 419 FNILQDGLAPGVLREFSIDEQGFVIGSYTNGGTRKLWKVAVAIFQDPNGLELVSGGLLRE 478 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +S I+ S V++ E S +I ++SY+ S K+I D+ML Sbjct: 479 AEQSGRPFFREAGTSGTATIAPSSIEQSNVDIGTEFSNMIVSQRSYSASTKVITTVDQML 538 Query: 473 QTLLEG 478 L+ Sbjct: 539 NELMNI 544 >gi|307293781|ref|ZP_07573625.1| flagellar hook-associated protein FlgK [Sphingobium chlorophenolicum L-1] gi|306879932|gb|EFN11149.1| flagellar hook-associated protein FlgK [Sphingobium chlorophenolicum L-1] Length = 446 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/492 (12%), Positives = 151/492 (30%), Gaps = 61/492 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 + +F + A++ NI NA + Y RR T S Sbjct: 1 MSDLFIIGASGTKAYRTAMAAVSENIANASTEGYSRRSVTTVESGSSTATMAVYISRANF 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + D + ++ +G + L + +A + ++ + Sbjct: 61 GGTDVKSVNRSTDPYLDATVRYTNTQLGSAVARMRW--LTDSETALNDTETGVGQLMTGM 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 +++ + + ++ L T +D+ V Q F +A ++ ++ + E + ++ + + L Sbjct: 119 FQNMDKLAASPNDKSLRVTTLDSISRVAQAFKQTAADLTQVSSGIATEAQASVTTINQAL 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S L +N+++ LD RD L +S + I ++ V + T + Sbjct: 179 SALADINNSLLRAQPGTSAYAQLLDSRDAALGTLSSNLNIDVSFGAHDQAQVTLNGQTLV 238 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + T++ + +A G + L D+V + Sbjct: 239 QGDSATPLALTVNANGTLSLT---------TSAGAALAAPASGTLGGLFSAADTVTQR-R 288 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 LD +A+ + + + + Sbjct: 289 ASLDTLAQQFVANMNNWHAQGLT----------------------------------DGS 314 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P ++ L D + + N ++ + Sbjct: 315 PGAAGAALLSGTSAATVTALISDPAQLAVKSSDGTANGNLLTVSTALRGNGSVEQGWTAL 374 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I S + +Q + + GV+L E + L++++Q+Y+ K++ Sbjct: 375 IATHANLLSSTKAEQTTAQSRSDQAVAAREAVSGVDLDMEAADLLRIQQAYSGCAKILQV 434 Query: 468 TDKMLQTLLEGV 479 + + +L+ + Sbjct: 435 AKETVDAILQII 446 >gi|117919772|ref|YP_868964.1| flagellar hook protein FlgE [Shewanella sp. ANA-3] gi|117612104|gb|ABK47558.1| GCN5-related N-acetyltransferase [Shewanella sp. ANA-3] Length = 453 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 54/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y P + Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ N++ + +D +S G+ + + + Sbjct: 217 SYNGENNWVAYYAIDGKQVD---ISGPAGTYQTDTNGDGTPDASGTAQTAGGWKGSVLKF 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +G ++ DP +E + D I QY + + Sbjct: 274 NSVGVYTGSDPAVVATETLGVGGAGVLGPGADGTQAVIIKFNA--PTQYSAPFAATELSQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLS 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F +S S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEPNSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|332284019|ref|YP_004415930.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] gi|330427972|gb|AEC19306.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] Length = 412 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 46/476 (9%), Positives = 109/476 (22%), Gaps = 69/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + N A+Q I NI N+ + + V S N+ Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKAGTASFADVYASSRVGLGTQVASINQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + S + D + + + Y N Sbjct: 62 TIGSVSNTGNQFDMAIDGAS-----GLFRVTDPSGSVLYTRNGQFSPDKDGYLVNAQGHR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + IR + ++ N + Sbjct: 117 L------------TGYEEGGTNLVPIRVPTGNIAPAATGVVTSKVNVDA--NAPLAGGAD 162 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D + + ++ + + + + ++ Sbjct: 163 PSATPPVPAATFDPA-------VPSTYTHSLPINVYDSLGNSHQMMQYFAKREGTATSST 215 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + V + + + Q + G++ A + A ++ Sbjct: 216 WDVYYRIGGQTVSAPLDGATQMTFDQGGRLTAPTTPVAVQMTAVPGASPAEALNFTVDYA 275 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G+ G Sbjct: 276 DSTQFGGDFA--------------------------------------FSFGQDGYPTGE 297 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + +A ++ Y + + + L N W+E + S L Sbjct: 298 YASMAIAADGSIVASYTNGETQTMGSLVLVDFANVQGLQPVGGN--AWVETSTSGQPILG 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V++ +EL +I +++Y + + I D+++QTL+ Sbjct: 356 RPGSNGMARIKGQAVEESNVDMSQELVNMIIAQRTYQANAQTIKTQDQIMQTLISM 411 >gi|121586274|ref|ZP_01676064.1| flagellar hook-associated protein FlgK [Vibrio cholerae 2740-80] gi|121549540|gb|EAX59566.1| flagellar hook-associated protein FlgK [Vibrio cholerae 2740-80] Length = 624 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 120/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ ++ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHSPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/397 (9%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 + + S I D+ + + L + ++ E Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 146 QK-IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + S+ + + + + R V Sbjct: 287 SPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|54297188|ref|YP_123557.1| flagellar hook-associated protein FlgK [Legionella pneumophila str. Paris] gi|53750973|emb|CAH12384.1| flagellar hook-associated protein 1 [Legionella pneumophila str. Paris] Length = 649 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 54/438 (12%), Positives = 134/438 (30%), Gaps = 17/438 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54 ++ N A + N + NI N + Y R+ + V+V + Sbjct: 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + S Q + + + + D +S + + DS+ Sbjct: 62 IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ ++ + Q FN+ ++++ ++ ++ + + R EL VN Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSALQVTESVKIINRITKELAEVN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + ++ + LD RD LL+++S +S + + + V + G L + Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G + + G + L+ +V+ + +MA Sbjct: 235 RDLVVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L +F+ + + + + G L + + S Sbjct: 295 IGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +S L A LI + +++ ++ L + Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTITVNDLSQL 414 Query: 415 RSDSHDLHMKSQVVFNHI 432 ++ H ++ + Sbjct: 415 ANNDHYTLTPTRGAARDL 432 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/398 (9%), Positives = 102/398 (25%), Gaps = 31/398 (7%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + + + T + + + + + + Sbjct: 252 FLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDM 311 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI---------VRNNNDMVVYTSDG 224 N I + ++ + +R S +S + + ++ Sbjct: 312 NSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANE 371 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L +S + + IDG+ ++ N S + L R + Sbjct: 372 LRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARD 431 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + D L + + L ++ + N Sbjct: 432 LALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVN 491 Query: 345 RSNPSFLRDGGSVSKKF----------------------LWNVKNLAGYPDLINHYCDSF 382 ++ + V + + Sbjct: 492 VTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNAGGFGDNRNGL 551 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + I N + TL + + + + + + ++ + + GV Sbjct: 552 SLSNIQQNKIFSNGSETLFDRYGGLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGV 611 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 NL EE + L+ +Q+Y + KL+ +++++ L + ++ Sbjct: 612 NLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDIMR 649 >gi|238922534|ref|YP_002936047.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|238874206|gb|ACR73913.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] Length = 617 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 53/473 (11%), Positives = 143/473 (30%), Gaps = 33/473 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49 S + + ++ + NI N Y R++ Sbjct: 3 STFFGLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEATLQAKDAINVTARYGSVGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLR 108 VTV + + + +D ++S G+ + + D+ + + S++ Sbjct: 63 VTVTSIKQQRDLYYDNKYWENNSCYGRYEQKLYYMEQIQNYFKDNGSSVKGFSSVFSQMF 122 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L++ S+ + I +A+ + FN + + K++ D ++EI + + Sbjct: 123 SDLDTLRSKPSDKTVRNQFISSAQSLCTYFNQMSDNLSKLQDDCNEEIRNNVDKINSISE 182 Query: 169 ELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +++++N I + +A D+R L+ +S+I+ +S + GT Sbjct: 183 KISLLNKEINQIETGTGVEASSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNF 242 Query: 228 FETVPRDI-------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + + + N+ T + I+ + + + + G +KA Sbjct: 243 SLYINGEKVVEGKDYRKLICESSKTKNNQTDNDDMYKIYWEDTKMEFSATAGTAGGSLKA 302 Query: 275 LLQIRDSVVPI------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 L ++RD + + + K + + + D Sbjct: 303 LFEVRDGDNLENFKGKVTKADSYSLTVENTSIDNIKSLNLPDKDGKITVNNISYSYDSWE 362 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 V + + +V++ +L N + + + F Sbjct: 363 AQVDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNF 422 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + + E + + ++ + + + T+ Sbjct: 423 SEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATIN 475 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 56/428 (13%), Positives = 130/428 (30%), Gaps = 11/428 (2%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ +K ++ + G + E + S N S + + N S Sbjct: 185 SLLNKEINQIETGTGVEASSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNFSL 244 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 I G+ V++ + +S + + D +I E + + + T Sbjct: 245 YINGEKVVEGKDYRKLICESSKTKNNQTDNDDMYKIYWEDTKMEFSATAGTAGGSLKALF 304 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 D + + S + ++I + + T+ ++E Sbjct: 305 EVRDGDNLENFKGKVTKADSYSLTVENTSIDNIKSLNLPDKDGKITVNNISYSYDSWEAQ 364 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-VVPIFQNQLDEMARVLIG 299 +S + ++ V +G + ++ +P + QL+E R Sbjct: 365 VDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNFSE 424 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-----YRSNPSFLRDG 354 F++ + N + I + SE P S+ + Sbjct: 425 MFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATINSSSNTYYRM 484 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYC-----DSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + +V N Y D ++ + + I Sbjct: 485 TAANFSVNKDVMNDVSLFATSTDYVKTDSCDIVDELKKLQSEKTVYRGDKAESFLETIIS 544 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + + I+ ++ GV+ EE L+K + SYN+++K+I + Sbjct: 545 NVSVDTEKAETYNKLYSNLEQTIANQRTSVSGVDEDEEALNLVKFQYSYNMASKIISVMN 604 Query: 470 KMLQTLLE 477 +ML L+ Sbjct: 605 QMLDKLIN 612 >gi|171059412|ref|YP_001791761.1| hypothetical protein Lcho_2731 [Leptothrix cholodnii SP-6] gi|170776857|gb|ACB34996.1| protein of unknown function DUF1078 domain protein [Leptothrix cholodnii SP-6] Length = 501 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 66/510 (12%), Positives = 121/510 (23%), Gaps = 48/510 (9%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56 F + + N S+ I N+ NA+ V Sbjct: 3 FQQGLSGLNATSKNLEVIGNNVANANTYGTKASRAEFADMYASTINNIGTGNVGIGVQVA 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + ++ L A + + F +K+ N + + E + Sbjct: 63 AVSQQFTQGSLSATDNPLDMAINGAGFFQVKDT------AGNQLYTRNGQFKLDKEGFIV 116 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L A +A +Q A E+ S + + Sbjct: 117 NNSGQKLLGY---PANADGVVVPGAAGALQLPTAGIAPMATDEVKMEMNLDSRGVLTDPT 173 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV------------------ 218 A+ ++ + Sbjct: 174 AVANKAAADAVTAQAAADAAVVTTQAAYDTAQANADAAPADTRLQSLATAALAARDRAVT 233 Query: 219 --------VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 V T+ + I+FE SY + + G V+ Sbjct: 234 VAAQAATTVTTTADAAAAAPLAAQIDFEDPASYNKATSMTAYDVKGQPVAMTYYFQKSAP 293 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARV-LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + + L S PI+ + V + + Sbjct: 294 DTWNIYATANGTSINVDASGRPVPVTQLQFPTSGAAPISPAAPVVFDVPGTTAADGSTTE 353 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 G+S QY + S + + N+ + Y + K+ Sbjct: 354 PITGVSFDFTQATQYGATFSVTDLTQNGYAPGEMSSLNVESNGIITARYSNGLTKSAGQI 413 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 VA L N W S S + F + V+L EL Sbjct: 414 EVANFRNPQGLQAVGGN--AWASTFASGSATVGTPDSGNFGQLQSGSLEDSNVDLTAELV 471 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I ++ Y + + I D +LQTL+ Sbjct: 472 NMITAQRVYQANAQTIKTQDSVLQTLVNLK 501 >gi|315497622|ref|YP_004086426.1| flagellar hook-associated protein flgk [Asticcacaulis excentricus CB 48] gi|315415634|gb|ADU12275.1| flagellar hook-associated protein FlgK [Asticcacaulis excentricus CB 48] Length = 718 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 58/425 (13%), Positives = 127/425 (29%), Gaps = 10/425 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPENVTVVTQ 55 MSL ++ N + A Q + NI N + Y+R + ++ V Sbjct: 1 MSLNSILNIGASGLMTAQSQLRVVSDNISNVNTPGYIRKVGTQQASVIGSQGAGVMSGQV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +S+ Q + + D N + K + S + Sbjct: 61 MLAADKYLQQAAMRANSSASQAEVFHELFDQIQSQFGDLTDTNGLFNLGDKALSAAASAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + V+ E + + E+Q RA+AD I + + + ++ +N Sbjct: 121 ETPASSAARQEVLSAFESFLDESKRISGEIQNARANADSRIATTVKAINDLIKNISDLNP 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I T + DA ++ + ++S++I + +N + V TS G L + Sbjct: 181 TISQSTINGSDASGAQTKQTGYIDELSKLIDVEVSTNSNGGVTVRTSSGMVLAGDQRASL 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++E + + + N + + G S G+++ LL +RD QL E Sbjct: 241 SYEPTSPVSAATNFNSVIVTGPNGEKRDFSEHIKTGELRGLLDVRDKESVAVSAQLAEYM 300 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR----SNPSF 350 V + A L + L L + + N + Sbjct: 301 SVYADQLNAAHNAASAVPAPNSLTGKAMNQTLAEALNGFADASGTGSGTTNLTVLDNTNK 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + ++ + + + ++ + + Sbjct: 361 IASKVDLTFSRDASGNSQVSINGGTAVLTSDSTLLSQINTALNGTGTLSFSDGKLSFAAT 420 Query: 411 LEKNR 415 Sbjct: 421 NSTYG 425 Score = 92.4 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 58/432 (13%), Positives = 130/432 (30%), Gaps = 7/432 (1%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V Q +E +++ L+A +A S + + N + Sbjct: 290 VAVSAQLAEYMSVYADQLNAAHNAASAVPAPNSLTGKAMNQTLAEALNGFADASGTGSGT 349 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD--KEIELEISNLRRFL 167 + + N ++ + + + + + + +D+ +I ++ Sbjct: 350 TNLTVLDNTNKIASKVDLTFSRDASGNSQVSINGGTAVLTSDSTLLSQINTALNGTGTLS 409 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 ++ A T A D + + S + G++ +VR++ T L Sbjct: 410 FSDGKLSFAATNSTYGVAIADDPSNPALKNGKGFSHLFGLNDLVRSDVPFDYATG----L 465 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + + + + + + Sbjct: 466 TASSAHGFDSGSVKFNVMNGSGSRVQTVDIAFPAGGTMTDLVNTLNNTSSGLGRYGTFSL 525 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + E+ G+ + IA +S G + L ++++ ++P +N Sbjct: 526 STSGELTFRGFGNPANSLGIAEDSTTRLGTGASFSEMFGLGGLAAERTDSLALDPTIANN 585 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNVTLLEYARN 406 L +AG K+ F G N TL YA + Sbjct: 586 LDRLSMATLNLTAASGTPALVAGDGSGAQRLATIATKSVTFKAAGGNAGGNSTLTRYAAD 645 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 G + + + + + + + GVNL EEL L +Q+Y+ S++LI Sbjct: 646 LAGQVGATAATAKSRMDGADALAAEATSRRTAAEGVNLDEELINLTTYQQAYSASSRLIQ 705 Query: 467 FTDKMLQTLLEG 478 +M L Sbjct: 706 AAKEMYDVLFNM 717 >gi|51246516|ref|YP_066400.1| flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] gi|50877553|emb|CAG37393.1| related to flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] Length = 566 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/570 (9%), Positives = 134/570 (23%), Gaps = 94/570 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M + + + N Q I N+ N + Y TM + + + Sbjct: 1 MGIGSALYTGVSGLNTNGQAMTVIGNNLANTNTIAYKGSRTMFSDLLSSSVTGSGGTSQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAI----------------GQQRLLQSFEALKEMMSAD 93 V + + + SS + Q + K Sbjct: 61 GRGVGLSRVDNDFSQGTFESTSSGLDLAIEGNSFFLLSPSNDQSIHYSRAGSFKFNEGGY 120 Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS------------ 141 E + S+ L + + + Sbjct: 121 LVNPGGLRVQGIAYGADGELAGGDPSDIFLDGAGMIKGAATSEMIMNTNLDSNAKIFPID 180 Query: 142 --------AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 +++ + + ++ T + + A + + Sbjct: 181 FDASNTNSYNFSEELTLTGPATVPATVPPSNSTITAQTYYRKTAENSWECYYTAKETMAD 240 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 + I + ++V +S T P + ++ T+ Sbjct: 241 GTAGSSTAASIKAGEVEIDAAGNLVDTSSATTPKANFDPFATSIAWDDTGATTTAVTAST 300 Query: 254 IDGVVVSSNQ-------------------------------------------GSAVPKG 270 S ++ Sbjct: 301 AGSPSSSIDKSLRENKSICTFDYKDPKTFTYSASVQIFDSLGNPHLISTYFRKTDDNTWD 360 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +L + SV+P N + D + P + I + Sbjct: 361 TYYSLEKEDGSVIPADPNAISLTQLRFGSEGQPVDSAGLPLDGPPTATTEEPIDWGNGSE 420 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I+ T Q+ S+ + + + N+ ++I Y + N+N Sbjct: 421 PTPITVTFDT-TQFNSSSKVISQEQNGYGAGNLSGVNIDEGGNVIAAYSNGKNRNIAAIS 479 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A L N S + + + + + + V++ E Sbjct: 480 LAKFQNPAGLTMEGNNLFA--ATGTSGAPRVGLPGPEL-GKVFTNSLEQSNVDMSVEFVR 536 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I +++ Y ++K+I D++L L+ + Sbjct: 537 MITIQRGYQANSKIITTVDELLGELINLKR 566 >gi|157961177|ref|YP_001501211.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] gi|157846177|gb|ABV86676.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] Length = 640 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 54/463 (11%), Positives = 129/463 (27%), Gaps = 38/463 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MSL + N A+ + Q A NI NA+ Y R+ + Sbjct: 1 MSL-DLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNDFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + L S+A+ + + + + + + ++ S Sbjct: 60 YVSDVKRVYNDYATRELRIGSTAVSETQTTFGKMSELDQLFSQ--IGKGVPEGLNNFFAS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + S + + +++ +A ++ + N + + +I + + EL Sbjct: 118 MNALSDIPGDLGMRGSMLTSANQLADSINQMQGHLDSQMTQTNDQIAAVTTRINEISKEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + + LD++D L+ ++SE ++ + ++ V L Sbjct: 178 GNINRELMKSQ---GEDMQLLDKQDALILELSEYASVNVVPLDSGAKSVMLGGSMMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I S + G++ AL+ RD + Q + Sbjct: 235 EVSMQMGTVQGDPYPNELQ--ITAQSGNKSMIVDATKLGGQLGALVNYRDETLTPSQMEF 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-----------DNKLCQGISETIC 339 + A + +F++ + G I I D N +S I Sbjct: 293 GQYALGVADAFNQAQAQGFDLNGQVGANIFTDINDPSMQIGRVGALSSNTGTANLSVNID 352 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + L+ + + L + + I + + T Sbjct: 353 DVGSLTGSSYELKFTAPSTYELKDAASGNITPLTLNGTKLEGADGFSIDIDAGALASGDT 412 Query: 400 LL---------EYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + + + + Sbjct: 413 FEIRPTSGAAASISVEMTDGKGIAAAGTKITADAANTGNSQVK 455 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/365 (11%), Positives = 103/365 (28%), Gaps = 7/365 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A V FN + + + I +I++ + + ++ Sbjct: 282 DETLTPSQMEFGQYALGVADAFNQAQAQGFDLNGQVGANIFTDINDPSMQIGRVGALSSN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S + K + + ++ T +GT L I+ Sbjct: 342 TGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAASGNITPLTLNGTKLEGADGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP-IFQNQLDEMAR 295 + + + S + + D+ Q +L + Sbjct: 402 IDAGALASGDTFEIRPTSGAAASISVEMTDGKGIAAAGTKITADAANTGNSQVKLVSIDD 461 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +F + + D+D + N + Sbjct: 462 RTDTNFPVTGSELTFEIDPAATPPTFEVFDVDGTSLGAAAAYTPPNISAHGFTFEIDSTA 521 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++KF +++ G + N + + TL + N+ + Sbjct: 522 ATAEKFTFDLSFAEGDNT------NMVNMAKLNEAKLMNGGKTTLNDVYENTKFDVGSKT 575 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + ++ + GVNL EE + L++ +QSY S +++ +++ TL Sbjct: 576 KAAEVAMGSADAIYTQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTL 635 Query: 476 LEGVK 480 ++ Sbjct: 636 FSSLR 640 >gi|119775444|ref|YP_928184.1| flagellar hook-associated protein [Shewanella amazonensis SB2B] gi|119767944|gb|ABM00515.1| flagellar hook-associated protein [Shewanella amazonensis SB2B] Length = 638 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 51/434 (11%), Positives = 131/434 (30%), Gaps = 19/434 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS+ + N A+ + Q NI N + + Y R+ Sbjct: 1 MSI-DLLNIARTGVLASQAQLGVTSNNIANVNTEGYNRQVATQATHLSQRSGNSFYGTGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + L +A G + + + + + + + ++ + + Sbjct: 60 YVSSVKRVYNEYAARELRIGQTAKGAAEVSHTKMSELDQLFSQ--IGKAIPQSLNDMFKN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S + S+ + V+ +A+++ N R+++ ++I+ + + +EL Sbjct: 118 INSLADLPSDLGIRGGVLGSAQQMASAINEMQRQLEGQMKQTHEQIDAITTRVNEISTEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + + LD++D L+ ++SE ++ I N + L Sbjct: 178 ANINRELMKTM---GEDMQLLDKQDALIMELSEYAQVNVIPLENGAKSIMLGGAVMLVSA 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 S+ + + + G++ AL + RD + +N+L Sbjct: 235 EVAMSMGTAQG--DPYSDELRLTATTGSSTLVVDPSKLGGQLSALYEFRDKTLIPAENEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPS 349 +++ + +F+E + G I I D + S + Sbjct: 293 GQLSLGIANAFNEAQKAGFDMNGQVGSNIFIDINDPLIAQSRVGQYGSNTGTASLSVSIE 352 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + D + + + Sbjct: 353 DVGALSGGAYELKYTAPGTYELTDTLTGDVTPLTLSGSTLTGGAGFNINIGAGAFADGDR 412 Query: 410 WLEKNRSDSHDLHM 423 +L + S + Sbjct: 413 FLIRPTSGAAAQMS 426 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 36/410 (8%), Positives = 98/410 (23%), Gaps = 18/410 (4%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +M S + L ++ + + + Sbjct: 229 VMLVSAEVAMSMGTAQGDPYSDELRLTATTGSSTLVVDPSKLGGQLSALYEFRDKTLIPA 288 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + +N + + R + +S Sbjct: 289 ENELGQLSLGIANAFNEAQKAGFDMNGQVGSNIFIDINDPLIAQSRVGQYGSNTGTASLS 348 Query: 209 TIVRN-------NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + ++ L +T+ D+ ++ T+T + G + Sbjct: 349 VSIEDVGALSGGAYELKYTAPGTYELTDTLTGDVTPLTLSGSTLTGGAGFNINIGAGAFA 408 Query: 262 NQGSAVPKGKIKALLQI-----------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + + + A Q+ + +V + S + Sbjct: 409 DGDRFLIRPTSGAAAQMSVVMTDPKAIAAAAPKITADATNSGNTKVTVTSIDNRLAANFP 468 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 F + + + + + S V Sbjct: 469 VTGSELTFTLNTGANTYDVTAADGTVLAAGVAYTPPSISAFGFTFEVESIGAATDSFTFD 528 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ + D TL++ + + + ++ ++ Sbjct: 529 LSYGEGDNSNALAMAQLADTKLMNGGKSTLIDVFEKTKQQIGSGTKAAEVRLGSAEAIYQ 588 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVNL EE + L++ +QSY S +++ ++ TL V+ Sbjct: 589 QAYGRVQEVSGVNLDEEAANLLRFQQSYQASARIMTTAQQIFDTLFASVR 638 >gi|294140184|ref|YP_003556162.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326653|dbj|BAJ01384.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 454 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 50/483 (10%), Positives = 111/483 (22%), Gaps = 41/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI N ++ + N VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F + A DH + + Y Sbjct: 62 SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSELEAKDHS----FTRAGAFKVNSADYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D T+ + V+ I + + +N Sbjct: 118 VDSQGNYLQTFPVDKDGNSTSVSLTTTKPVR-------------IPDTAGSPKKTENINI 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A D D S + + + + + Y + Sbjct: 165 QMNLNAADATLDPALFDPNDRDTYNNSTAVTMYDSLGEPHILTTYF-----VRPPNAAYT 219 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ V + + + + ++ Sbjct: 220 GESNWAAFYAIDGQQVDLAGPAGVFDQDTTGDGVADVLNTPAVNAGGWKGAVIKFNDTGA 279 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + Q ++ QY S Sbjct: 280 HTTTDPDPILTVQLGVAGAG-------VLGPGTDGTQTLTIDFNNPTQYASTFEVTELNQ 332 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +A L + W Sbjct: 333 DGTTVGRLTNVEVGADGLINASYSNGSTVALARVALARFANEQGLTQVGN--TSWRASLD 390 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 391 SGLALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 450 Query: 476 LEG 478 L+ Sbjct: 451 LQI 453 >gi|269836573|ref|YP_003318801.1| hypothetical protein Sthe_0541 [Sphaerobacter thermophilus DSM 20745] gi|269785836|gb|ACZ37979.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 413 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 42/478 (8%), Positives = 100/478 (20%), Gaps = 66/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 L A + I NI N + Sbjct: 2 LNRSMASAVSGLKAYQTWLDVIGNNIANLATPGFKASRVRFEDV---------------- 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + S + + + + + + + Sbjct: 46 -----------MSHTLRGASVPDPAQGRGGRNPAQVGLGVLAAGIDTDYAPGTPTATGKM 94 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + VV + + + S + N AI Sbjct: 95 SHMAIQGEGYFVVADGFRTYYTRDGSFDLGIDGRLVNPSTGLYVMGWQADANGAIDTSQP 154 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ D + S I I + + T+ +++ + Sbjct: 155 LSPIRIPIGEEMDAMP---SMSIVIPGNLNAAAATGTTYTTDVTVIDSLGFRHSVSLTFE 211 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T T+ + + + Sbjct: 212 KTGTNTWSWTYSSSEAGVTLTN---------------------------------ATGTV 238 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E D + + Q + + Sbjct: 239 EFDDQGNVLNVTSAGDLTIQWGNGAADTVIPGGGDFTRLTQLAAGSDAVG-VADGWTAGA 297 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + Y + K +A LL+ +N + S + Sbjct: 298 LTSFAISVDGVVTGIYSNGATKALGQIALATFANPGGLLKEGQNLLSP--SPNSGQAVIG 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ Y V+L EE + +I E+ + +++++ +D++LQ L+ + Sbjct: 356 TPVTGGRGQIAAGYLEMSNVDLAEEFTNMILAERGFQANSRVVTTSDEVLQDLVNLKR 413 >gi|218778840|ref|YP_002430158.1| flagellar hook-associated protein FlgK [Desulfatibacillum alkenivorans AK-01] gi|218760224|gb|ACL02690.1| Flagellar hook-associated protein FlgK [Desulfatibacillum alkenivorans AK-01] Length = 583 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 50/434 (11%), Positives = 139/434 (32%), Gaps = 21/434 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 + + + A + N+ N + + Y + + V Sbjct: 3 GIRSALDIAVGAMATHQYGMDVVSHNVANVNTEGYTLQTVINKSKVPQASGGFMFGRGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 R +K L + S++ +++F + + + ++ N +S +S Sbjct: 63 TYEIRQLVDETVEKRLLEYRSSLASAEEIETFGKVLDGLF-NEVEGNGLGTMLSDFFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E S N + + + A + Q + + + ++ + + S++ Sbjct: 122 EDLSLNSAGTAERSVLYEQALGLAQYIDELDAALIGEEENLGISLQSGVEAVNTLTSQIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + + + +D LDQR+ L+ ++++ I + T +++ + V G TL Sbjct: 182 DLNQQIVAASQN-TNPNDLLDQRNYLMSELAQYIDVQTFAQDDGSLTVLGPRGVTLVIGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 R + + I+ G V KG++ L++RD+V+ + L+ Sbjct: 241 DRF--------DINLHQGDIIYGKGTDKELTITDYVEKGRMGGWLEMRDTVISELRANLN 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-NKLCQGISETICVNPQYRSNPSF 350 E+++ +I + + + + + + Sbjct: 293 EVSKEMIWAVNTIHSQGIGLTGLTSTTGSYTAAATNQPVGSAAADLFFGDRITDGGFNFW 352 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + D + ++ + + + + +++ + + G+ Sbjct: 353 VYDASGNVVNPGGTNIAITANTTTMDDIATALGAVDLNVTASTVGGRLSITAGSGYTFGF 412 Query: 411 LEKNRSDSHDLHMK 424 E + L + Sbjct: 413 TEDTSNVLAALGVN 426 Score = 96.6 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 5/293 (1%) Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + + + + + + + G+++ + G+ + D + ++ V Sbjct: 295 SKEMIWAVNTIHSQGIGLTGLTSTTGSYTAAATNQPVGSAAADLFFGDRITDGGFNFWVY 354 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 S + G + + I L D V + L + Sbjct: 355 DASGNVVNPGGTNIAITANTTTMDDIATALGAVDLNVTAS-----TVGGRLSITAGSGYT 409 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + L + + + + D + N Sbjct: 410 FGFTEDTSNVLAALGVNTFFTGEGSGTMGIHETIAADRNMIAAGKADAATGEISSGNNET 469 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 +LA + + ++ I N ++ + + I L + + + ++ Sbjct: 470 SLAIGELKYTNLSITEWQSKRIGSDTSITVNASIEGFYASMISALGSSLNSAERNREFAE 529 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ + GV+L EE++ LI+++QSY + KLI D++ QTL+ Sbjct: 530 SMVQNLETVRGSISGVSLDEEMTKLIELQQSYAAAAKLITTMDEIFQTLMTIK 582 >gi|89075495|ref|ZP_01161906.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89048767|gb|EAR54338.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 467 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 54/486 (11%), Positives = 139/486 (28%), Gaps = 34/486 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 N A + A + + NI NA+ + T + V Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + ++ + + F A+ + ++ NN+ + E Sbjct: 62 STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L ++ V ++ + ++ + K +++S L E Sbjct: 116 NELVNSEGKFLLGYPVNKDSNTVASYEAKSMKIDDVFGQPTKSGTIKVS-LNLPNKETAP 174 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +++ FK + D L + + + + + + V ++ + +TV Sbjct: 175 KSNSFDFKDPDSFNKSTSSTIYDSLGKP--YKMTTYYVAKYDPNAVPTNANTWEVHQTVT 232 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + E++ S + + + D + L + Sbjct: 233 NNSGEERLLKPDPASIPAAYQV-------IDNTDPTAPVVTGYRMRFDQNGQPYPGDLGD 285 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + P+ E I G D L + + Sbjct: 286 PTATPPIPPTPASPLNIQMETFASAGIDVGGADPTQSLTMNYDDPTQYASAFE---VRKF 342 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ +++ Y + + +A ++ L + W Sbjct: 343 QDVDGATTGYLSKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTL--WNT 400 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S SQ F + +++ +EL LI ++++ S++ + +++ Sbjct: 401 TQESGQAIWGDASQGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQLQ 460 Query: 473 QTLLEG 478 Q +L+ Sbjct: 461 QNILQI 466 >gi|332994156|gb|AEF04211.1| flagellar hook-associated protein FlgK [Alteromonas sp. SN2] Length = 709 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 62/449 (13%), Positives = 149/449 (33%), Gaps = 14/449 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59 MS + +F+ A + N +S+ + NI N + YVR T V + Sbjct: 1 MSAVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELVNSDVFGVEIGNTERII 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L +++G+ S + + + A + NS + IS ++++ S + + Sbjct: 61 NVFAQNQLRRDITSVGELEAFSSKTSAIDTLLASEA--NSLSKGISDYFAAVQTASDDPT 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + V+ +E + Q T + + + + + E+ ++ +S + +N I Sbjct: 119 NLASREQVLGKSESLYQRMKTLSDYMVEKEEEFNLEVTSLVNRTNSLISSIGELNKNIVI 178 Query: 180 KTASKHD--AHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDI 235 + +++RD +++++ I+ I N + V + G +L Sbjct: 179 AKGNNTSDEPSALMNKRDAAVEELASIMAIDVKDSQSQNGAITVNLTTGESLILENGAFN 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290 FE S TS+ + D + N + + G + L + R+ V+ + Sbjct: 239 LFEISTSADSTSKELKLETDFGSQTKNDTTIRIVESDLGGSLGGLFRYRNEVLGTAMRDV 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++ + + ++ + + + G I D + + V + Sbjct: 299 GQLSVTFADAVNTQNKLGMDLDGQLGGNIFDIPTFRGLETQDTSGDYQVVGQLVAGKGAE 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L D + + + I + +N T+ G Sbjct: 359 LTDADYQIEVTAVSAGVPSEI--EITLLNPDGTPQKDGSGNDIVYSNYTVTSGFNELPGG 416 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNT 439 +E + + + + S+ Sbjct: 417 IEVEFGGTSTYAVGDEFLMQPTKTIASSI 445 Score = 97.8 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/438 (10%), Positives = 116/438 (26%), Gaps = 11/438 (2%) Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 ++ + + + + D + Sbjct: 277 GGSLGGLFRYRNEVLGTAMRDVGQ---LSVTFADAVNTQNKLGMDLDGQLGGNIFDIPTF 333 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 LE+ + ++G+ V E+ EV + A EIE+ + N Sbjct: 334 RGLETQDTSGDYQVVGQLVAGKGAELTDADYQI--EVTAVSAGVPSEIEITLLNPDGTPQ 391 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-----ISTIVRNNNDMVVYTSD 223 + ND + ++ +V S + + + + T+ Sbjct: 392 KDGSGNDIVYSNYTVTSGFNELPGGIEVEFGGTSTYAVGDEFLMQPTKTIASSIELATNR 451 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L P + N + I V + Q + G I L Sbjct: 452 PEDLAFAAPVRAQADATNLGSANVSGVSITNTEVGGGTEQSAFDGAGGIHDLASSPSGTF 511 Query: 284 P-IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 Q + + N L + + ++ Sbjct: 512 GAPAQIVFTAEDSYQVLDGETPPNVITNVTGATNLSNLLAQAESSGSSPAWPAAFSSLDN 571 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S + + + N+N + N T + Sbjct: 572 YPGYDISLDGVPKAGDSFTISYNTDGFNDNSNALEIAALQNENLVQVSSESTNQQRTFQD 631 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + +G + ++ + + ++ + + + GV+L EE + L+K +QSY+ + Sbjct: 632 AYASMVGRIGEDAAMADISLTSAEAMKTQSENWFESVSGVSLDEEAANLVKFQQSYSAAA 691 Query: 463 KLIMFTDKMLQTLLEGVK 480 +++ ++ T+L + Sbjct: 692 RILSTAQELFDTILSAAR 709 >gi|290474972|ref|YP_003467856.1| flagellar hook protein [Xenorhabdus bovienii SS-2004] gi|289174289|emb|CBJ81079.1| flagellar biosynthesis; hook protein [Xenorhabdus bovienii SS-2004] Length = 416 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 55/476 (11%), Positives = 113/476 (23%), Gaps = 65/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V KN Sbjct: 2 AFSQAVSGLNAAASNLDVIGNNIANSATFGFKSSSAAFADVFSGSDVGLGVKVSGMVKNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + ++ + + N+ Sbjct: 62 KDGSTTTTSRQLDMAITQGGFFRMLD------SNGSTFYSRNGQFNMDSDRNLINMQGMK 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + Sbjct: 116 LTGYPAVQGANGPEIQK------------------------------------------- 132 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 RD+L K + + ++ + + N V + ++ +S Sbjct: 133 -GAAPGPISIPRDMLDAKATTNVTMTANLNSMNKKVDINPFNPSNKDSFNYSSGLSVYDS 191 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 N F+ + + ++ D V + + S S Sbjct: 192 LGNEHNINVFFVKTNDNEWDIYAQDTSVPGSDHQKLNDKKVVEKEGE----------SKS 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G F D + + Q S S + Sbjct: 242 VLFSGNGKIIGNNNAFAFDMPGLNGSIGAPITIDFNNSKQQSISQDSISNQQQNGYAAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + Y + + +A + L N W+E S S + Sbjct: 302 FTNYRVDSDGKIHGLYSNQQTQVLGQVVLANFSNPEGLAAQGDNV--WVETGASGSPIVG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + V++ +EL +I +++Y + + I D++LQTL+ Sbjct: 360 TAGSGNFGKLISGALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 415 >gi|71282480|ref|YP_268228.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H] gi|71148220|gb|AAZ28693.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H] Length = 665 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 149/464 (32%), Gaps = 27/464 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENV 50 MS+ +++ + A QQ A+ NI N + Y R+ + Sbjct: 1 MSV-SLYQSGMSGLLAAQQQLATTGHNISNVNTDGYNRQRAEQNATVGLNNGNNYIGGGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + K + S +G L + + + + N+ + + + Sbjct: 60 YIQDITRLYDQFSHKEQITNQSKLGNADSLHARLTQLDQVMST--SGNAVVGSLDQFYQA 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L + N ++ L V++ A + +FN + ++ + EIE S + EL Sbjct: 118 LNGVADNPNDSGLRSIVLNQANTLSNDFNQLTNNLDQMTKSINGEIEQVASKISEISQEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I +D LD+RD L+ ++S ++T+ NN M V GTTL Sbjct: 178 AKINETIMHSQQ-GGQPNDLLDKRDQLIGELSNYTQVNTVKDANNVMTVMIGQGTTLVAG 236 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++N+ S+ + + S + G + A + RD + + ++ Sbjct: 237 ITPMTL--QVNAGDPDSQQTELRLVSGSSSVALKGSTLGGSLAASFEFRDEHLSQTRTEI 294 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK-----------DLDNKLCQGISETIC 339 D +A + + ++ + + G+ I I N TI Sbjct: 295 DRLAMAISSTLNDSQASGLDLNGLQGVNIFTDINSTQLQQGRVLAHSGNSGSTQAEITIT 354 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + ++ +R G + + I + + + + T Sbjct: 355 DVSKLTTDEFEIRFEGGNFTLYNLTSGSSENLGPPILPSGGTHKPSSPDYGFSFVETGTP 414 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 I L + + + +T V+ Sbjct: 415 AAGDKFTIIPTKNSAALMQTTLTDGNAIAASTAIGVTPSTNNVS 458 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 47/430 (10%), Positives = 113/430 (26%), Gaps = 12/430 (2%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLES 113 + + + L S + + + S T I +L ++ S Sbjct: 244 VNAGDPDSQQTELRLVSGSSSVALKGSTLGGSLAASFEFRDEHLSQTRTEIDRLAMAISS 303 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSARE---VQKIRADADKEIELEISNLRRFLSEL 170 + L + +T ++ + + E+ I+++ + ++ Sbjct: 304 TLNDSQASGLDLNGLQGVNIFTDINSTQLQQGRVLAHSGNSGSTQAEITITDVSKLTTDE 363 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + T + + +L S + + G Sbjct: 364 FEIRFEGGNFTLYNLTSGSSENLGPPILPSGGTHKPSSPDYGFSFVETGTPAAGDKFTII 423 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + T + GV S+N S I + + Sbjct: 424 PTKNSAALMQTTLTDGNAIAASTAIGVTPSTNNVSDGKIEIINVMNPEDAKSFTGTGLTV 483 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D + + + D + + T + N Sbjct: 484 DVVESAPGSGIFDYRVFDTATPPALITSGNYNAGDSEVVDLPPLPGTPAFQIEISGNL-- 541 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 V + + + + + T + S Sbjct: 542 ------VGSGTNAREEFSINDAFGVGNGKHAVAMAKTQEVGVTNGGKETFSKSLAVSTSV 595 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S++ +Q +F +T GVNL EE + L+K +Q+Y ++++I + Sbjct: 596 VGAKASNAELTADTAQALFTQAYNRNQSTSGVNLDEEAANLLKFQQAYQAASQIISTANT 655 Query: 471 MLQTLLEGVK 480 + T+L V+ Sbjct: 656 IFDTILAAVR 665 >gi|146307869|ref|YP_001188334.1| flagellar hook protein FlgE [Pseudomonas mendocina ymp] gi|145576070|gb|ABP85602.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 438 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 43/476 (9%), Positives = 105/476 (22%), Gaps = 43/476 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62 FN + A++ NI NA + + + T + + Sbjct: 2 SFNIGLSGLRAATKDLNVTGNNIANAGTAGFKQSRAEFADVYAASVLGTGSNPQGSGVLL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + I + + E + N Sbjct: 62 GDISQLFNQGNINYTQNALDLAINGNGFFVTSNNGEISYTRAGYFGTDREGFMVNNFGYR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +D + + Sbjct: 122 LQGYTVDANGNLQNGVVS------------------------------------DLRIQT 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + ++ + + +S T +++T F + Sbjct: 146 ANQEPRATANLAQTFNLNSNNVVPTTVPFDPTDPTSYNSSTSTNIYDTQGNSHVFTQYFV 205 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + P +P V Sbjct: 206 KTGPNTWTMNVLIDGRNPDDPTLTTPSSVDLQFTTAGQLDIPALVGSTPTGFTVAADGTI 265 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + GI+ + + Q+ S+ + R Sbjct: 266 SLSTWVPAAPDNSVPPV--WSPNGAAANAAGITIDVRQSTQFASSFAVNRVSQDGYTTGQ 323 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + +K +A L + W++ +S + Sbjct: 324 LAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANVQGLTPVGK--TAWVQSFQSGEPVVG 381 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V L ++L LI +++Y + K I + QT++ Sbjct: 382 TPRAGTLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 437 >gi|117923397|ref|YP_864014.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1] gi|117607153|gb|ABK42608.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1] Length = 588 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 67/431 (15%), Positives = 160/431 (37%), Gaps = 20/431 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50 ++ ++ N ++ + +S+ +NI N + Y R+ T + V Sbjct: 8 TISSLLNISKTGLLSNQYALSSVSQNIANVNTAGYSRQTAALTSNQGALRGNTDGIGGGV 67 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + D + G+ + + E + +D + + + + Sbjct: 68 AVSDLKRSVDALVDNRIQLGLGEKGRLETRNQYLNMIENVF-NDQDGDGLSTRLDEFFSM 126 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ + N + ++ +A+ V N ++ + D+EI++ ++ + L L Sbjct: 127 VDKLADNPTSPASRAELVASAQNVTNFANKMYDDLAGLALPVDQEIDVLVNTINTKLKSL 186 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 V+ AI+ + + + A D DQRD +++++S +I + + + + T+ G L + Sbjct: 187 AEVDSAIQLREKTNNPALDLKDQRDEMIRELSGMIDVQVLSNQDGSTTLMTAGGELLMDH 246 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + T+ I ++G S + + G +KALL++RD VV L Sbjct: 247 G--FTATFGRGALDTTTGFAGITVNGK--SGDYTDKLSSGSLKALLEVRDQVVGGSSGYL 302 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++ ++ + + I S ++ G+ DL + ++ Sbjct: 303 TKLESIVDELRFQVNSITSTSSSMYLNQSQTGVFDLGTQTATAVNAQDYTTVNAPPPDLG 362 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAGINTNVTLLEYARN 406 G+V+ + + NL+ I + A +N N L A++ Sbjct: 363 RVVDGTVTFAYGSDANNLSFDSVNITSSMTIDEVVAALNASNAVSASVNANNQLSIAAKS 422 Query: 407 SIGWLEKNRSD 417 + + + S+ Sbjct: 423 TYYAVSADSSN 433 Score = 85.1 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 47/376 (12%), Positives = 114/376 (30%), Gaps = 10/376 (2%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 ++ S L + + + A + + + L Sbjct: 220 MIDVQVLSNQDGSTTLMTAGGELLMDHGFTATFGRGALDTTTGFAGITVNGKSGDYTDKL 279 Query: 168 SE---LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 S ++ + S D L +++ I S+ + N G Sbjct: 280 SSGSLKALLEVRDQVVGGSSGYLTKLESIVDELRFQVNSITSTSSSMYLNQSQTGVFDLG 339 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 T V + S + I + + I D VV Sbjct: 340 TQTATAVNAQDYTTVNAPPPDLGRVVDGTVTFAYGSDANNLSFDSVNITSSMTI-DEVVA 398 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 A V + + + + + VN + Sbjct: 399 ALNASNAVSASVNANNQLSIAAKSTYYAVSADSSNIMAAMGIGALFGGTGASNMAVNSEM 458 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ + + G + + D + D N F ++TL + Sbjct: 459 VADQTTV-PVGRIRTDANGLPQFDNADNDGVLALGDLRNTKF-----TLFGESLTLSAHY 512 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 ++I L ++ + + + +N + + ++ GV+L+EEL+ L++ ++++ S+K+ Sbjct: 513 ASTISQLGAEQASNEEQLGAATSTYNFMQQVRASISGVSLEEELTDLMRFQRAFQASSKM 572 Query: 465 IMFTDKMLQTLLEGVK 480 ++ D++LQ+++ V+ Sbjct: 573 VVTADELLQSVIGMVR 588 >gi|312962588|ref|ZP_07777078.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] gi|311283168|gb|EFQ61759.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] Length = 437 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 51/477 (10%), Positives = 115/477 (24%), Gaps = 46/477 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSENKN 61 FN + A++Q NI N + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 G +L + R + + N + Sbjct: 62 AAVSQQFTQGDVNGSGGILDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGFITNNTGT 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + A++ + ++Q ++ + ++ + S V++ +K Sbjct: 122 SRLQGYA--ADDDGKIIKGGLTDLQLNLSNLPPKASTKVDSTSNLNSSEPVIDQTLKPFD 179 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S + + + + +V+ + + TL + + + Sbjct: 180 PSDTSTFTTQYSTTLYDSQGNAHPMVQYLVKTDG----NKWNAYTLIDGRNPNGSSPTGG 235 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + ++ + DG ++ Sbjct: 236 TPPTPPVASTLTFDGAGK----------------------------------LSSIVTGG 261 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 S + + + + GI+ + QY S Sbjct: 262 SSSTTLTLTGWVPGTVTNGVWKANGADANPTGIAINMANITQYNSATYRNPPITDGYATG 321 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + G + + + +K +A N L S W E S Sbjct: 322 QITGLKIDGNGVMFATFSNQQSKAIGQISLASFNNEQGLQP--AGSTTWRETFASGQPGY 379 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + VNL EL LIK + +Y + K I ++QT+++ Sbjct: 380 DTPQSGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTIIQM 436 >gi|242280467|ref|YP_002992596.1| hypothetical protein Desal_3005 [Desulfovibrio salexigens DSM 2638] gi|242123361|gb|ACS81057.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 549 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 53/556 (9%), Positives = 121/556 (21%), Gaps = 83/556 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENV--- 50 M L A + + + NI N + + + V Sbjct: 1 MGLSASLFSGITGLQAHGDKMSVLGNNIANVNTVGFKSAKMHFEDAISQDMSTATGVAQV 60 Query: 51 -TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + S + F + + S R Sbjct: 61 GRGVQVGAIYADFAQGSFETTSESTDLAIGGDGFF-----IVSPKDEETSYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDN---------AEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Y + +L + + A N + IR + + Sbjct: 116 DKDGYLTDPHGYVLQGWQVQDESNSQVATGASVSTSNAVRTVGVPTDIRLENFQSAPKAT 175 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNNNDM 217 + + + + TA + D S I N + Sbjct: 176 TTINMITNLDSQEASRSTDSTAPYLSLFNSWDGAAEPPLGDSLYGYQSTIKVYDANGSAH 235 Query: 218 VVYTS-------------------------------DGTTLFETVPRDINFEKMNSYTVT 246 V T DG T + ++ Sbjct: 236 NVTTYFDQVTLSNAGGKKVWEFIVTCDPEEDGRISDDGVNFAGTSAAGLLMTGTMTFNAA 295 Query: 247 SESNPIFIDGVVVSSNQG---------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + ++ + L + + + + + Sbjct: 296 GDLTGVSAFTLKSNGGTAAADLRNADEWSLAEFSQDGLPVLTANFLSRSNASFTDASNDP 355 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN---------- 347 + + G + L I P + Sbjct: 356 VTIEMNFGLNNKDLSGTGTTKGWGGATVSNASLLGTNITDISNIPNFGDAEKSALATTSY 415 Query: 348 ---PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L +++ L Y + + +A N + L Sbjct: 416 SSGSTTLFQSQDGYTAGFLQSTSVSRDGVLTGRYSNGQIQELYVLTIASFNNDWGLRREG 475 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N S + + I+ + V+L E +I ++ + ++K+ Sbjct: 476 GNLFTQ--TRESGDALTGLPNSSGKGSIASNSLEMSNVDLAVEFVSMITTQRGFQANSKV 533 Query: 465 IMFTDKMLQTLLEGVK 480 I TD M+ L++ + Sbjct: 534 ITTTDSMMGELIQLKR 549 >gi|218886713|ref|YP_002436034.1| hypothetical protein DvMF_1618 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757667|gb|ACL08566.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 525 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 56/533 (10%), Positives = 131/533 (24%), Gaps = 61/533 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------- 49 M L + + + + ++ + I N+ N+ Y + + Sbjct: 1 MGLSSSMYASVSGLLSTAESISVIGNNLANSSTTGYKSMSMLFEDVFYSSITTSGGIDQI 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + S A+ + + +++ + Sbjct: 61 GNGSAISAISTDFSQGSYQDTSEAMNMAIAGEGYFIVED----PQNDGQIYYTRAGDFTF 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-------- 161 + E Y N S + +D + +T+ + Sbjct: 117 NTEGYLVNSSGYQVQGWAVDPDTASSTDPSTTGALGDVQLKSRTSPASATTNVTLTVNLD 176 Query: 162 -----------------------NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 + L AH+ D + Sbjct: 177 SGGDDNSTSTTDPYFSLLTEWDGSADDPLGTTKYEYQTTITVYDEAGSAHELTVYFDQVE 236 Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + +V N V T G ++ T + S+ T Sbjct: 237 DSATGSTTWEYLVTMNPSEDVRTIGGQSVSGTSAAGLLMAGTLSFDATGALVSQTA--FT 294 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + S + L ++ +P+F A ++ + + Sbjct: 295 LGSTASGDLTDLSNWTLAELSTDGLPVFACNFSGSANASTTDEADAIQVELDFGLSAKSI 354 Query: 319 IADGIKDLDNKLCQGISETI-----------CVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + G T+ + S S + Sbjct: 355 TDSWNTTVTSAADIGTDGTLLFGFTSTAYDTDRTTSHDSASSTDSSSQNGYATGYLTSYY 414 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + Y + + +A N + L N S + ++ Q Sbjct: 415 VDEGGVIYATYSNGQTQALFIVALASFNNDQGLQLEGGNLYS--ATTESGTANIGRAGQG 472 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ I V++ E+ LI ++++Y ++K+I D+MLQT L + Sbjct: 473 IYGSIYGEKLEESNVDVSTEMVDLIVMQRAYQANSKVITTVDEMLQTALGLKR 525 >gi|114330361|ref|YP_746583.1| flagellar hook protein FlgE [Nitrosomonas eutropha C91] gi|114307375|gb|ABI58618.1| flagellar basal body FlaE domain protein [Nitrosomonas eutropha C91] Length = 419 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 48/482 (9%), Positives = 109/482 (22%), Gaps = 73/482 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---------QR 56 F + AS + NI NA+ + + + N Sbjct: 2 GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFSDVFANSLGGGKNQIGIGTQVA 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + + + F + + + Sbjct: 62 AIAQEFAQGNVTSSDNPLDVAITGNGFFRTNNN-------GTISYTRNGQFHLDKDGFLV 114 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + D + ++ + N Sbjct: 115 NANSYNVTGFAADASGQI-------------------------------------IPNIP 137 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + + S NN + S +F+++ Sbjct: 138 VNLRLPTSDLTPKPTANFATGVNLDARTSVTSVAFDANNPLTYAHSTSGEIFDSLGNSHI 197 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T ++E V + G + Sbjct: 198 LNLFFQKTNSTEWGVFATVDGAVDTTNGLPLGVTFGGGGST------------------S 239 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L + +V F A S + + Q+ + Sbjct: 240 LTFDSNGIMTTPTGPIDVTVDFQAIDATKWGAIPDLTFSFDLTRSTQFGNKFGVNMMNQD 299 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +++ ++ Y + + +AG + L N W E S Sbjct: 300 GFTSGRLAGYSISDNGEIRGSYTNGVTRTLGQLALAGFSNPNGLKPMGNNQ--WAETAES 357 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + V + S V+L EL LI ++ Y + K I D ++Q+++ Sbjct: 358 GLPLIGTPETGVLGSLQSSAVEESNVDLTSELVSLIMTQRVYQANAKTIQTQDAVMQSIM 417 Query: 477 EG 478 Sbjct: 418 NI 419 >gi|167750722|ref|ZP_02422849.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] gi|167656401|gb|EDS00531.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] Length = 521 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 42/523 (8%), Positives = 122/523 (23%), Gaps = 47/523 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48 ++ + Q+ I NI N + + T Sbjct: 1 MVRSLFSGVSGLKTHQQKMDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V K + S + + D N Sbjct: 61 GVNPSQVGYGTKLGAIGQVMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFN 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRR 165 + + +++ D + + + + +A + + Sbjct: 121 VDNAGNLVDSNGNMVLGVSGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGGTYPLT 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++ + I + ++ +++Q + + + + G Sbjct: 181 VSADTATPDGNISVGFTVGESDYAYMSGNKLVVQLNEKNDYTNLNDLEDAVTRACENGGV 240 Query: 226 TLFETVPRDINFEKMNS---YTVTSESNPIFIDGVVVSSNQG------------------ 264 ++ +P + + T+ +N + +D ++ Sbjct: 241 SIEGVLPLHFELDTVPPAADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLR 300 Query: 265 ------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 K L + Q + + + + G Sbjct: 301 YSKNAADTTAKWSDNGLTISVCPGATVADIQAAVDKAAGSNEKYQLKVTSTDWDAANGAL 360 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINH 377 D L G + Q N + + + + Sbjct: 361 ETLLATDGKVGLAGGSNNFFSDMVQLLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGV 420 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + + L + + W E S +++ + + Sbjct: 421 HSVHGIIMLGRIDIVTFDNPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGAL 478 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L +E S +I ++ + ++++I +D ML+ ++ + Sbjct: 479 EMSNVDLSQEFSDMIITQRGFQANSRIITTSDTMLEEIVNLKR 521 >gi|262161346|ref|ZP_06030456.1| flagellar hook-associated protein FlgK [Vibrio cholerae INDRE 91/1] gi|262028657|gb|EEY47311.1| flagellar hook-associated protein FlgK [Vibrio cholerae INDRE 91/1] Length = 624 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 120/332 (36%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ ++ + QN N V+ + +K + L + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD + +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHILYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 ILYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|15887919|ref|NP_353600.1| flagellar hook protein FlgE [Agrobacterium tumefaciens str. C58] gi|15155515|gb|AAK86385.1| flagellar hook protein [Agrobacterium tumefaciens str. C58] Length = 425 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 118/481 (24%), Gaps = 57/481 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + N + + ++ NI NA Y R T + + + S Sbjct: 1 MSIFGTMRTGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSSGSYASGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + + +P + + E Y +N + Sbjct: 61 QSNVRYSISEQGNLSYTTSSTDLAIQGNGFFVVQDGSGTPYLTRAGSFQKNSEGYLENAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + N L + V N + Sbjct: 121 GFQLMGYPYG------------------------SNPPAAVVNGFTGLEAINVNNFGLTA 156 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 +++ L++ D G + + Sbjct: 157 SPSTQGSFPANLNRDDKAATAP-------------------LPSGNSATAAFGNKTSLTA 197 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 +S + + + + ++ Sbjct: 198 FDSGGAKVLYDFYYTKTGDNTWEVAVYRQDQSTNGGFPYTATPAANLVQTKVDLEFDPAT 257 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + I D + + Q I+ + Q+ + + + + Sbjct: 258 NKLT-----------TASPKSITIDDQVSGVPQAINIDLSQMTQFSAKFTPGTAVLNGNG 306 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + Y D +N +A + + L +N +L N S Sbjct: 307 PSQIKDVEIGKDGLVTAVYQDGGRRNIYQLALATVPSVDNLTP--QNGNVYLPSNDSGVV 364 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + F +I + V++ EL+ +I+ ++ Y ++K+ ++ L+ Sbjct: 365 TIGFPQSGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLINLK 424 Query: 480 K 480 + Sbjct: 425 R 425 >gi|24374758|ref|NP_718801.1| flagellar hook protein FlgE [Shewanella oneidensis MR-1] gi|24349424|gb|AAN56245.1|AE015762_2 flagellar hook protein FlgE [Shewanella oneidensis MR-1] Length = 453 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 55/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y P + Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ N++ + +D VS G+ + + + Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTNGDGTPDATGTAQTTGGWKGSVLKF 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +G ++ DP +E + D I QY + + Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQAVNIKFNA--PTQYSAPFAATELSQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLS 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F +S S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEPNSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|269792279|ref|YP_003317183.1| flagellar hook-associated protein FlgK [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099914|gb|ACZ18901.1| flagellar hook-associated protein FlgK [Thermanaerovibrio acidaminovorans DSM 6589] Length = 858 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 55/465 (11%), Positives = 127/465 (27%), Gaps = 39/465 (8%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46 F + + + + NI NA+ + Y R+ + S Sbjct: 5 FFGFEMGRRAMDYFRRGMETAGHNISNANVEGYSRQRVDASSSPPFTDPGLARPALPGQI 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R D G + + E M ++ ++ Sbjct: 65 GTGVQIDAIRRLRDLFLDSQYREEVCVKGYWDAVLNAVNQTE-MYVNEPAGKGFQAAMND 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 +L+ SK ++++ NA+ VV + R +KEI L++ Sbjct: 124 FWAALQEVSKRPDNSATRESLVQNAKSVVVFLQQLNTNYDQYRTALNKEIRLKVDEANSL 183 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTS 222 + ++ +N I+ + +D +D+RD+L++K+S+II + I + D V Sbjct: 184 IDQIAQLNGVIEEIKGVGGNPNDLMDRRDLLVEKLSKIIDCTVGSPCIDEADGDFKVDLG 243 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIF-----IDGVVVSSNQGSAVPKGKIKALLQ 277 + T R + + + + V++ + +L Sbjct: 244 GKLLVQGTEARHLVLVPVAGNQGFFDVQVEDNLFSHVSDPTVATAILEQKMPESVVSLNV 303 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 R + ++ + + + V + + Sbjct: 304 NRLASETRWELGRGDAMLTVTDKDRALGLRGSFALQVSSSGVVRSSAAFPAAGGNPVGTV 363 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + S L + + + + + + N G Sbjct: 364 LIPPTGNASYRFRL-------SAGDFESMVSVTWDSVNSRWDITDNLGNSASTAGGFLNL 416 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 L + N + + S D + + + V Sbjct: 417 SDLNSFFANYSAKVTSSLSTGGDQLT-----LSSVDRHLLSISDV 456 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 49/444 (11%), Positives = 121/444 (27%), Gaps = 19/444 (4%) Query: 41 TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + + D+ L + S G L ++ + +S Sbjct: 424 ANYSAKVTSSLSTGGDQLTLSSVDRHLLSISDVQGNLGSLLGLTGSSPAVTIEVTEADSL 483 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 +K+ + S D+ K + + + + + D Sbjct: 484 VTIANKINSAY-------SSDLARKVPPELTTNPPGTPPETPEQWLRCLVEQDGTTGNYY 536 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND---- 216 L+ L T + + R + + + T ++ Sbjct: 537 LKLQSHLVGETYRINVLGGSDCGTGQGGSLYMARKLGFVNADDSTSVMTYSQDAYFVFED 596 Query: 217 -MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + +++ + + V V G+++ L Sbjct: 597 KEYLSSTNAFKDARRLSASDLWSASMPTEVYKGLRLELKGVGATQIQSRHHVKGGELRGL 656 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 L+ RD + + DE+ L+ F+ S + D + K + Sbjct: 657 LESRDDFLLTQMDWFDEIVFGLVTEFNSLHYSGHGSGDYINTTGIDFFVPVVGKYGASSN 716 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + S+ + + + + Sbjct: 717 FALNQLLEIHSSLV-------AASSGDGAGHAQGAAGNSSGDGSVALKLAQLKQAKVLNG 769 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + Y + I L + + + + + I+ + +GVN+ EE+ +IK + Sbjct: 770 RSADFNAYYESFIAELGAVGQRASTMAKNQKALVDQINTQRQSVMGVNMDEEMMDIIKFQ 829 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 Q++N + I D+ML ++ G+ Sbjct: 830 QAFNGIARYITTIDEMLDKIINGM 853 >gi|326389474|ref|ZP_08211041.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] gi|325994479|gb|EGD52904.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] Length = 417 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 43/478 (8%), Positives = 108/478 (22%), Gaps = 61/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + S + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + D + + L + ++ + Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPVATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + Sbjct: 173 IGGN--------------------------------------------------LNASTA 182 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 N + D S K + S + +D + S Sbjct: 183 IDADISYNIVVYDSQGGSHVATITFT-RKGANSWDWKVSSSDPAISSIDGTGTLTFDSEG 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + P + G + ++ N +S + + S + ++ Sbjct: 242 KIAPDQSGNRIATGTLTFNMDSNMTNATIGPVSLDLSKLTMFSSETDLRELSKNGNEAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 302 LESINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTM--FINTVNSGEPMIG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + K+I +D++LQ L+ + Sbjct: 360 AAGTGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVNMKR 417 >gi|153001472|ref|YP_001367153.1| flagellar hook protein FlgE [Shewanella baltica OS185] gi|160876203|ref|YP_001555519.1| flagellar hook protein FlgE [Shewanella baltica OS195] gi|217972598|ref|YP_002357349.1| flagellar hook protein FlgE [Shewanella baltica OS223] gi|151366090|gb|ABS09090.1| flagellar basal body FlaE domain protein [Shewanella baltica OS185] gi|160861725|gb|ABX50259.1| flagellar basal body FlaE domain protein [Shewanella baltica OS195] gi|217497733|gb|ACK45926.1| flagellar basal body FlaE domain protein [Shewanella baltica OS223] gi|315268393|gb|ADT95246.1| fagellar hook-basal body protein [Shewanella baltica OS678] Length = 453 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 116/483 (24%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+++ F + + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTASEIGSLDHS----FTRAGAFKVDSNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ +S ++ + ++ Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPIKTENVSLQMNLNAKESTLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D + + + + M Y + Sbjct: 178 -------------AAFDPLDPKTYNNVTSMTMYDSLGEPHIMTTY------FVKPNDASY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N E + + +DG + + + Sbjct: 219 NGESNWVAYYAIDGKQVDLDGAAGTYQTDTT-------GDGNPDSTSTAQTTGGWKGSVL 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G+ Q ++ QY + + Sbjct: 272 KFNSVGVYTGSDPAVVKTETLGVGGAGVLGAGADGTQDLTIKFNAPTQYAAPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + + L + W Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSSVPLARVALVRFANEQGLTQVGN--TSWKASLN 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|269103190|ref|ZP_06155887.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] gi|268163088|gb|EEZ41584.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] Length = 449 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 47/486 (9%), Positives = 131/486 (26%), Gaps = 52/486 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 N A + A + + NI NA+ + T + V Sbjct: 2 SVNIALSGLGAAQKDLNTTSNNIANANTYGFKESRAEFGDVYSNSIFSNAKTSTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + ++ + + F A+ + + NNS + + Sbjct: 62 STVAQ---QFHEGSSLYTNNPLDLRISGAGFFAVADN--KAEPANNSL-TRNGAFHLNNQ 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L +++ V ++ + ++ + S+ Sbjct: 116 NELVNSEGKFLLGYEVNSDTNTVSSYEPKSMKIDDVFGK-------------PTPSKTMD 162 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ++ + K + + D +D + S I + M Y + Sbjct: 163 ISLNLPNKETTPKNHPFNFDDKDSYSR--STSSTIYDSLGKPYKMNTYYVAKYNPADPTT 220 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + P+ +D ++ + V G I + ++ + + Sbjct: 221 ANTWEVYHTVTNPSGKELPLDVDTAKLNP---AFVANGAIHGTAAHKGYIMKFDTSGQQQ 277 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + + Sbjct: 278 AGSPSVINMVNFKTAGIDVGGADDSQALTMNYKEPTQYASPFEVRQFKDV---------- 327 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ +++ Y + ++ +A ++ L + W Sbjct: 328 ---DGATTGYLSKVDIDPDGNVLASYSNGKDRIVGRVAMARVSNEQGLSQLGGTL--WNV 382 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S SQ F I +++ +EL LI ++++ S++ + +++ Sbjct: 383 TQESGDAVWGDASQGSFGAIKSGTLEQSNIDMTQELVDLITAQRNFQASSRALEVNNQLQ 442 Query: 473 QTLLEG 478 Q +L+ Sbjct: 443 QNILQI 448 >gi|2443633|gb|AAC33158.1| hook associated protein [Vibrio cholerae] Length = 624 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 118/332 (35%), Gaps = 17/332 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N A +Q + NI N + + Y R+ + + V V Sbjct: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R K L+ S+ +R + + + + +++ DS++S Sbjct: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ K V++ ++ + QN N V+ + + + + + E+ + Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITRQRVSSWRKRINQLALEIRDL 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232 + +D +D+ + L+ ++S+ ++ R + ++ +G TL Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + T + ++G + + + GK++A+L +RD +P +++ Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +A + + G + + Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328 Score = 93.6 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144 + + S I D+ + + L + ++ Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + + + + + S+ + + + + R V Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346 Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + + + + V + + + Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + P A +++ Q E + ++ + + ++ Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +G + L +++ L N K A + Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 I + T+++ N + + L +++ ++ G Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623 >gi|291529033|emb|CBK94619.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 477 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 46/484 (9%), Positives = 127/484 (26%), Gaps = 13/484 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + + + + N Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTASG---ASAGNG 57 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ IG + + + N ++ + + + + Sbjct: 58 ATGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117 Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + + +Q + DA + I + L ++ + Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGNV---IKDTVSSLQVMSSATKTSAPEA 174 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 +K LD+ D II I + T + + ++ Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234 Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 S + V + N I G + + + + V + ++ Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + +++ + ++ L+ G Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGNLQGDGK 354 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + VA L + N N S Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCY-QSTLNSS 413 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + ++ IS V+L + + +I ++ + ++++I +D +L+ L+ Sbjct: 414 EFDGIGVEISADGGSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473 Query: 477 EGVK 480 + Sbjct: 474 NLKR 477 >gi|212634348|ref|YP_002310873.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212555832|gb|ACJ28286.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 453 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 110/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + ++A + + NI N + + V Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + + DH + +Y Sbjct: 62 SQVAQQFHQGSLQFTNNSLDMAINGGGFFVTSSEIGSQDHS----FTRAGAFKFDSNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ VQ I + + + Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTEPVQ-------------IPDTAGSPVKTDNIGM 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + K D D S + + + + M Y Sbjct: 165 QMNLNAGDKTFDPANFDPDDPDTFNNSTSVTMYDSLGEPHVMTTY------FVRPPNAAH 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + + +D + + + ++ Sbjct: 219 TGESNWVAFYAVDGKQVDLDPASGTYDIDTTGDGNPDGTANAETAGGWKGAAISFNDTGA 278 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + A + Q ++ QY S Sbjct: 279 YTGSNPAVIQTEALGVGGA-------NVLGPGADGAQTLTLNFNNPTQYASPFEVTELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVRFANEQGLSQAGN--TSWKASLD 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|114562348|ref|YP_749861.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina NCIMB 400] gi|114333641|gb|ABI71023.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina NCIMB 400] Length = 642 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 52/411 (12%), Positives = 121/411 (29%), Gaps = 20/411 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + N A+ + Q NI NA+ + Y R+ + Sbjct: 1 MSI-DLLNIARTGVQASQAQLGVTSNNIANANTEGYNRQVATQSSLESQRLGNSFYGTGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L +++ S+ L E+ ++ S Sbjct: 60 YVSDVKRVYNEFAARELRIGQTSMSAAE--TSYSKLSELDEIYSQIGKMVPENLNNFFAS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S + ++ + + +A+++ N ++ + +IE + + EL Sbjct: 118 INSVADLPTDLGIRTNSLSSAQQLAIGLNQMQSQLDGQTKQTNNQIESITTRINEISKEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD++D L+ ++S+ ++ I + + L Sbjct: 178 GSINLELMKSQ---GQDSQVLDKQDALILELSQYAQVNVIPLDTGAKSIMLGGSVMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I ++ + + G++ AL RD + +L Sbjct: 235 EVSMSMGMSTGDPYPNEPRINASIGDKTLNVDP--SKLGGQLGALFSFRDDTLLPASTEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A + +F+E + G I I D + + N + Sbjct: 293 GQLALGIADTFNEMQSKGFDLNGDIGSDIFRDINDPLMASGR--VGSNSTNSGTAAMSVN 350 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + D G++S G L + + ++ Sbjct: 351 IDDVGALSGGSYQLGYTTLGGYQLTDTQTGKQTTLTLSGSQLTGGAGFSIN 401 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 36/364 (9%), Positives = 83/364 (22%), Gaps = 3/364 (0%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + FN + + D +I +I++ + + Sbjct: 282 DDTLLPASTELGQLALGIADTFNEMQSKGFDLNGDIGSDIFRDINDPLMASGRVGSNSTN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S + + + G T G+ L IN Sbjct: 342 SGTAAMSVNIDDVGALSGGSYQLGYTTLGGYQLTDTQTGKQTTLTLSGSQLTGGAGFSIN 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + ++ +L Sbjct: 402 IDSGAIADGDKFDIRPTAGAAAGLKVVMTDPKGIAAAGPQITPNTTN---SGELAVKVNA 458 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + A ++ N + P + Sbjct: 459 INRADANFPVTGSELSVRVNTNTAIKTFEVFNAAGTSVGGPTAFTPPQINTGFGFSFEID 518 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + D N TL N+ + Sbjct: 519 DQSTAGVTDTFTFDLSFAEGDNSNAVEMAKLSDTKLMNNGTGTLTSVFENTKLDIGSQTK 578 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ S + GVNL EE + L++ +QSY + +++ + TL Sbjct: 579 SVEVRVGSATAIYQQASTRVQSESGVNLDEEAANLLRFQQSYQAAARIMTTAQTIFDTLF 638 Query: 477 EGVK 480 V+ Sbjct: 639 SSVR 642 >gi|167623367|ref|YP_001673661.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] gi|167353389|gb|ABZ76002.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] Length = 639 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 61/460 (13%), Positives = 139/460 (30%), Gaps = 39/460 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MSL + N A+ + Q A NI NA+ Y R+ + Sbjct: 1 MSL-DLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + L S+A+ + + S + + + + + ++ S Sbjct: 60 YVSDVKRVYNDYATRELRIGSTAVSESQTTFSKMSQLDQLFSQ--MGKAVPQGLNDFFAS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + ++ L + + +A ++ + N + + +I + +EL Sbjct: 118 MNALADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTNDQISAVTDRINEISNEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD++D L+ ++SE ++ I + + L Sbjct: 178 GSINRELMKSQ---GQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I S ++ G++ AL+ RD + Q +L Sbjct: 235 EMSMQVGTAPGDPYPNELQ--ITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + A + +F++ + G I I Sbjct: 293 GQFALGVSDAFNQAQAQGFDLNGQVGANIF---------------TDINDPSMQLGRVGA 337 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L + + + + + + D V+G T +TL Sbjct: 338 LSSNTGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNG------TK 391 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 LE S ++ + + +++ V+L E++ Sbjct: 392 LEGANGFSINIDAGALASGDTFEIRPTSSAAVSLSVEMTD 431 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 40/359 (11%), Positives = 96/359 (26%), Gaps = 6/359 (1%) Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + A V FN + + + I +I++ L + ++ Sbjct: 287 PSQMELGQFALGVSDAFNQAQAQGFDLNGQVGANIFTDINDPSMQLGRVGALSSNTGTAN 346 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S + K + + ++ T +GT L IN + Sbjct: 347 LSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSINIDAGA 406 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + V S + + D+ + Sbjct: 407 LASGDTFEIRPTSSAAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETG 466 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 E P + G + + ++KF Sbjct: 467 FPVTGAELTFEIDPSTTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKF 526 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 +++ G + + + + TL + N+ + + Sbjct: 527 TFDLSFAEGDNT------NMVSMAKLSEAKLMNGGKTTLTDVFENTTIDVGSKTKSAEIS 580 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ ++ + GVNL EE + L++ +QSY S +++ +++ TL ++ Sbjct: 581 MGSAEAIYKQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR 639 >gi|289523318|ref|ZP_06440172.1| flagellar hook-associated protein FlgK [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503010|gb|EFD24174.1| flagellar hook-associated protein FlgK [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 825 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 66/480 (13%), Positives = 143/480 (29%), Gaps = 49/480 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46 + + + + NI NAD Y R+ + Sbjct: 5 FFGLEMGRRALDYFRRGMETAGHNISNADVDGYSRQRVEAGTTIPFTDPAFNRPATPGQI 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R + D S +G L+ E + ++ + + Sbjct: 65 GTGVQIEAIRRLRDSFLDAQYREEMSTLGYWEALEEAIGHIE-LFVNEPAGEGLKVALDE 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 +LE SK + VI + + + + + + R ++++ ++ + Sbjct: 124 FWAALEELSKRPDNAAAREGVIQSTKNLTVFLDQLSGNYDQYRLSLNQDLGSLVTEVNSL 183 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD--G 224 + ++ +N+ I A + +D LD+RD+L +K+SE+I IS + D G Sbjct: 184 IDQIAALNEKIAQVKAVGGNPNDLLDRRDLLTEKLSELIDISVSTPLQEQDGDFKIDLHG 243 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-------------------- 264 L + + + N Sbjct: 244 KVLVQGSQTRHLVLVSVPGNEGFYDVQVEDNLFDHVDNTDVLLAVIEQKAPTAVHSVLVE 303 Query: 265 --SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 ++ K+ + + + V P L + + S S V +D Sbjct: 304 RLASETNWKVGSPGSLSNVVSPDQALNLHGDFSLQVSSGGVVKTSHQFSGGVLPSPASDE 363 Query: 323 IKDLDNKLCQGISET-ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 +D +L G E I VN ++ +RD + + +L D IN S Sbjct: 364 SRDYSFRLAAGGFERVISVNWNDSASKWEIRDNAGNNALSASSTLSLQDLSDFINANYSS 423 Query: 382 FNKNFIFDPVAGINTNV-----TLLEYARNSIGWLE-KNRSDSHDLHMKSQVVFNHISES 435 + + + +L++ + L + + + + + + N I+ Sbjct: 424 YLNASVTSDNRLTIASSDRHLISLVDIKGDLTSQLGISDSAKTVTVSVTEEDSLNAIANK 483 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/420 (11%), Positives = 116/420 (27%), Gaps = 13/420 (3%) Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + ++ +A + + + + T + + Sbjct: 414 SDFINANYSSYLNASVTSDNRLTIASSDRHLISLVDIKGDLTSQLGISDSAKTVTVSVTE 473 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 ED L + S+ E + +RA ++ + + Sbjct: 474 EDSLNAIANKINGAYMTEGGPSSPE-EWLRASVEQAPDGTYYLTLESQVMGEAQRINVTG 532 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 L + ++ + + + + T + + Sbjct: 533 DENGGLYVAHNLGLLNSDGSTNFMTTAEDALISFDGRKYLSSVNRFTEARQITPSDGYAA 592 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N V+S + S V GKI +L+ RD ++ + DE+A L Sbjct: 593 KNMSEVSSGITLQLAGTGMASVRVEHHVQGGKIYGMLEARDDLILSHLSTFDELAYRLAL 652 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + L + S T+ + S+ Sbjct: 653 EMNALHYSGHGMGENADVTGTAFFVPLLRQYGAARSLTVNPLLEQDSSL----------- 701 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + G + + + E+ + I L + Sbjct: 702 -IAAAADDGEGNSLGSGDGTKALAMARLKQTKVLSGGSADFNEFYLSFIAELGAQGRRTV 760 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + I+ + +GVN+ EE+ ++K +Q++N + I D+ML T++ + Sbjct: 761 TMAENQRALTDQINAQRQSVMGVNIDEEMMDIVKFQQAFNAMARYITTIDEMLDTIINRM 820 >gi|152997576|ref|YP_001342411.1| flagellar hook-associated protein FlgK [Marinomonas sp. MWYL1] gi|150838500|gb|ABR72476.1| flagellar hook-associated protein FlgK [Marinomonas sp. MWYL1] Length = 658 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 48/399 (12%), Positives = 133/399 (33%), Gaps = 9/399 (2%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNM 62 +++ + +++ + + +N N D + Y R+ T T SP V + N Sbjct: 3 SNLYSIGLSGLLSSNARINTTGQNTANVDTEGYSRQRTDTASSPVGGVVLRDTSRLVDNF 62 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + +S S + + + A+D S + Y+ K +L++ + + + Sbjct: 63 VSAQVRSDTSDFSYYDTYHSLMTMSDNLLAEDSI--SLSGYLDKAFSALQAANNDPTSSS 120 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + +V + + V + D+++ ++++ + ++ +N I + Sbjct: 121 LRQLAHSSLNNLVGQYKALSNMVSGQESLVDQQLTTSLADINSITTRISNLNVKILREEG 180 Query: 183 SK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A++ DQ+++L + +S+ + I+ ++ M + ++G L N Sbjct: 181 LSISPANELRDQQELLAKDLSKYLDINAQFNDDGLMTIQLANGQPLVMDQTPTELKVVPN 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + V+ S G + L+ R L + A + + Sbjct: 241 QLNPKKIDLVVSFGDYNVALKSDS--LGGSVGGLVDFRSEFSEYADRTLGQSAIAISDAM 298 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + ++ ++ G + + + + + + Sbjct: 299 NMQNGKGLDANGDFGKDLFSLEDISVYSSPDNTHKLSDFSVRVSA---GEASKITTDTYE 355 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + ++ K+ IFDP + Sbjct: 356 FTRTDDNRFAIKKYDLNGNAVGKSTIFDPSNMTPDSNGY 394 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 53/408 (12%), Positives = 122/408 (29%), Gaps = 22/408 (5%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 ++ + R Y+ + LG++ I ++ + Sbjct: 257 NVALKSDSLGGSVGGLVDFRSEFSEYA----DRTLGQSAIAISDAMNMQNGKGLDANGDF 312 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 D ++ + + +L+ + + ASK + R + + ++ Sbjct: 313 GKDLFSLEDISVYSSPDNTHKLSDFSVRVSAGEASKITTDTYEFTRTDDNRFAIKKYDLN 372 Query: 209 ---TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 D T D ++ ++ + + + F ++ Sbjct: 373 GNAVGKSTIFDPSNMTPDSNGYYKIEELGLDIRVKDFNIIDHDDVFSFAPSAGAAAGLNL 432 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + G AL V + L E L + K + + + A Sbjct: 433 KIKSGDNIALSAP--VGVSTSSDNLSEARISLSSVTNTKPTTSAFASDGSLYPSAPHSIY 490 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRD-----GGSVSKKFLWNVKNLAGYPDLINHYCD 380 + + + V N D G S F +V + D + D Sbjct: 491 FTSPNSYVVRDASGVEIASVDNVFEYTDLLEKAGLSQDAGFDVSVSSKPQSGDEFSISTD 550 Query: 381 SFNKNFIFDPVAGIN--------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 ++ F+ +A ++ +L++ I ++ ++ S+V+ N Sbjct: 551 EIGQSDNFNGLALVDLQNQSLVEGKASLVKAFAGFISYVGAKTAEVAGHAESSEVIMNDS 610 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE L+K +QSY+ S +++ +TLL ++ Sbjct: 611 VNRRDRLSAVSLDEEAVNLMKYQQSYSASAQVVTAARTTFETLLGIMR 658 >gi|149908759|ref|ZP_01897420.1| flagellar hook protein [Moritella sp. PE36] gi|149808301|gb|EDM68240.1| flagellar hook protein [Moritella sp. PE36] Length = 437 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 41/478 (8%), Positives = 116/478 (24%), Gaps = 48/478 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---NKNM 62 ++ + + ++Q I +NI N + + + + + Sbjct: 2 SYSIGLSGLRSTNEQLNVISQNIANVNTSGFKSGRAEFSSVYSGGSAGGVEVAAISSNFD 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + ++ + F L + + +Y + S Sbjct: 62 RDGDVVNTGRSMDLAISGRGFFVLNN-------GGETSYTRAGSFVRNASNYIETSSGAR 114 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +D + + + ++ S++ + Sbjct: 115 LQGYPVDANGAL------LSGVISDLKVGTGTLPAKASSSVEFAANLKADAAAPATAFDP 168 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + Y+ G + + Sbjct: 169 TNIQPDMYN----------------------------YSQSGKVFDSLGREHVLTQYFVK 200 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + V++ + G + + + + + Sbjct: 201 QVPGPAVTAVAAKPAVIADPTATPKVIGSPEVKAVAARGITVENEWDVHYFIDGQKAGTT 260 Query: 303 EKDPIAGNSENVPGLFIADG--IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + ++ + + I ++ Q ++ S R+ + Sbjct: 261 ATQTLNFDTSGNITSPTGSVELSQTITGADPLSIKISMTNMSQNAASFSLSRNETNGYGA 320 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + L Y + +K +A L + ++ W + S + Sbjct: 321 GDLKTIRIDDDGSLYGVYTNGQDKLQGKVILANFANPNGLRQ--GDNTTWGQSFASGAPT 378 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + S ++ V+L EL L+ +++Y ++K I +KM Q L Sbjct: 379 VGLPSSGTLGSLTSGAYEGSNVDLTGELVSLMTAQRNYQANSKTISAAEKMTQVLFNA 436 >gi|86157813|ref|YP_464598.1| hypothetical protein Adeh_1387 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774324|gb|ABC81161.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 428 Score = 127 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 44/486 (9%), Positives = 101/486 (20%), Gaps = 64/486 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MSLL + +S + + + NI NA+ + + + Sbjct: 1 MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQTVIGGSGQVGL 60 Query: 60 -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114 + A+ L + + + Y Sbjct: 61 GARLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 NL + D + V + Sbjct: 121 LVNLEGLRVQGFPADPSGAVAGLPDDL--------------------------------- 147 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + N S T+++ + Sbjct: 148 ----LVGTASAQPRATTRLTLKANLQADAAVPAAAWDPANPGATSNFSTTMTVYDALGAG 203 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + T + + + + L D Q Sbjct: 204 HAVQVYFRKTGDGAWDWHALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFT 263 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + D G+ + + Q+ + + G Sbjct: 264 PAGQAAPQPLDFSFGDPTSA-------------------GGTGLAGVTQFSATSASTFIG 304 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + + + VAG L N + + Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + I V+L E+ LI ++++ ++K I D++L Sbjct: 363 GSGQPVVGAAGAGGRASIVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422 Query: 475 LLEGVK 480 L+ + Sbjct: 423 LIAMKR 428 >gi|91201245|emb|CAJ74305.1| similar to flagellar hook-associated protein FlgK [Candidatus Kuenenia stuttgartiensis] Length = 653 Score = 127 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 49/411 (11%), Positives = 135/411 (32%), Gaps = 23/411 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 + + A + NI NA+ K Y ++ + V +V Sbjct: 3 SSDIQIGMSGVLAAQRAMMVSAHNISNANTKGYTKQTVSLATRLPLQTTIGSIGQGVDLV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + + + +S++G + E + ++ + S ++ ++ + Sbjct: 63 KIMRQKDDYLNSRIRFVTSSLGASSIKSQQLRELETVF-NELSDASISNSLTSFFKFVND 121 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S++ +++ A + ++ E+ ++ + +E +++ + ++ + Sbjct: 122 LSQD-ESTSSRSVLVEKAITMTESIRAIVDELGMMKEFVKQSVESKLNEVNGLAKDIVDL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + + +D LD+R+ LL +IS+ + ++T + N + V + G + + Sbjct: 181 NKEIHSLQTTGGEPNDLLDKRETLLGEISKFLDVTTRTQKNGMIDVMIAGGVLVSGSNAL 240 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + +S + S + G++ LL++ ++ +P + +LD Sbjct: 241 TLESRVDSSGKLNITSYG----------SSKHKPTGGELSGLLEMYNNTLPAYDAKLDTF 290 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A LI F+ ++ + K D + + Sbjct: 291 ATALIKKFNAIHSEGVGTDGGFTTVLGT-NKVTDATKALNTAGLGLPFAPSSGDIYVTVI 349 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S ++ + L D + ++ +T Sbjct: 350 NTSTGEEVKNKITVDVANDSLTKLSADIDGITNLSSAISDGKLQITADSGY 400 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 45/391 (11%), Positives = 98/391 (25%), Gaps = 7/391 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + ++L +Y L NA Sbjct: 264 PTGGELSGLLEMYNNTLPAYDAKLDTFATALIKKFNAIHSEGVGTDGGFTTVLGTNKVTD 323 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + + + + S + DV ++++ N Sbjct: 324 ATKALNTAGLGLPFAPSSGDIYVTVINTSTGEEVKNKITVDVANDSLTKLS-ADIDGITN 382 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + ++ + ++ ++ + + GV S+ + + Sbjct: 383 LSSAISDGKLQITADSGYKFNFSYALDPNPGDLGASTVSLSGVYSGSSNDTYTFEALGTG 442 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + ++ + L N + + G N L Sbjct: 443 TIGTTSGLQVEVRDSGSNLIATLDVGEGYTPGNTLAVANGVSVSFSAGAVASGNTLTGVD 502 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD----- 389 + + K + LI N Sbjct: 503 VINDSDKTDLLAALGINTFFSGKDASDIDVEKRIREDVTLIATSIGESGDNTNALRLSAL 562 Query: 390 -PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 I N TL +Y L + + ++ K + + GVN+ EEL Sbjct: 563 QNDNSIVGNTTLSDYLHQIAAALGEEANSAYKSEEKYTALEGSLQNRREEVSGVNIDEEL 622 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LI+ +Q+Y S K I D+++ TLL + Sbjct: 623 VTLIRFQQAYQASAKYISTVDRLINTLLNSL 653 >gi|325291962|ref|YP_004277826.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] gi|325059815|gb|ADY63506.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] Length = 426 Score = 127 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 52/481 (10%), Positives = 120/481 (24%), Gaps = 56/481 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + N + + ++ NI NA Y R T + + + S Sbjct: 1 MSIFGTMRTGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSSGSYASGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + +P + E Y +N + Sbjct: 61 QSNVRYSISEQGNLSYTTSSTDLAIQGNGFFVVQDGGGTPYLTRAGSFVKNAEGYLENAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + + ++ S +N Sbjct: 121 GFQLMGYPYGANAPAAVVNGFTG------LEAVNVNNFGLTASPSTQGSFPANLNRDEAA 174 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A + + ++ + N + Y S G + Sbjct: 175 VAAGSRPSDNLA----------------TSTIGNKTSLTAYDSGGAKVLYDFYYTKTGAN 218 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 V + ++ + V + A + + P Q + Sbjct: 219 TWEVAVYRQDQSTNGGFPYTATPAANLVKESVTLAFDPATNKLTPTSQKSITI------- 271 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D + + Q IS + Q+ + + + + Sbjct: 272 ------------------------NDTVSGVPQAISIDLSDMSQFSTKFTPGTAILNGNG 307 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + Y D +N VA + + L +N +L N S Sbjct: 308 PSQIKDVEIGKDGVVTAVYQDGGRRNIYQLAVATVPSVDNLSP--QNGNVYLPSNESGVV 365 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + F +I + V++ EL+ +I+ ++ Y ++K+ ++ L+ Sbjct: 366 TIGFPQTGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLINLK 425 Query: 480 K 480 + Sbjct: 426 R 426 >gi|304438222|ref|ZP_07398164.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368829|gb|EFM22512.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 574 Score = 127 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 68/468 (14%), Positives = 136/468 (29%), Gaps = 31/468 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------ 49 S A N N + NI NA + Y R+ + + Sbjct: 3 STFAGLNTMVRGIQNNQLSLDTTGHNITNASTEGYSRQRVDSAATNYQERPSLYGNVYVG 62 Query: 50 --VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V VV DK + +S + ++ + + +D + + + Sbjct: 63 GGVDVVALNRARNIYADKQFWSETSTQNLYKTYKTNYDKAQAVF-NDAKETGVLNAMQQF 121 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 +L + S S+ V+ +V T AR++Q E+ +++ Sbjct: 122 YSALVNLSDYASDSASRTAVLTKGNNLVDRIKTGARQLQDQIKAQYDEMRIQVGKANSIA 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 ++ V+N I + A+D DQRD+L+ K+SEI ++ N V S+G TL Sbjct: 182 EKIAVLNQNIMLAENNGGKANDLRDQRDLLVDKLSEITNVNVYEEANGQYTV-VSNGMTL 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + E + + + G G ++AL + Sbjct: 241 VQR-DSHLTIEMSPPIDNVRYGINDYTLRIKEAGGIGYVPQGGVLRALQDTIVQD-KGYI 298 Query: 288 NQLDEMARVLIGSFSEKD--PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + L +++ L+ +F+ +++ L K + Sbjct: 299 DNLADISATLLTTFNGVHKLGAGIDADATSWLNFFGRNKFTSPSGTYDQMNYVWHVHPTT 358 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + L G + + I + + + + Sbjct: 359 GDRW-LEAYGVNITRTTSGGPPPTSATVTMATAATPDELRSIQIINELQVSEQLMAQGGQ 417 Query: 406 NSIGWLEKNRSDSHDLHMKSQ--VVFNHISESYSNTVGVNLQEELSFL 451 N + + + M V +L ELS L Sbjct: 418 NLVAARQIKNATISAGGMTYDFANVNGTADG--------SLAVELSKL 457 >gi|304409978|ref|ZP_07391597.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307302309|ref|ZP_07582067.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|304351387|gb|EFM15786.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306914347|gb|EFN44768.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 453 Score = 127 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 117/483 (24%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI NA+ + N V Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+++ F + DH + +Y Sbjct: 62 SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTSSELGTLDHS----FTRAGAFKVDSNNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+A+ VQ ++ ++ ++ Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDFAGSPVKTENVTLQMNLNAKAEALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D D + I + ++ M Y + Sbjct: 178 -------------ALFDPSDGKTYNNVTSMTIYDSLGESHIMTTY------FVKPKNGAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + E ++ P+ ++G + + + Sbjct: 219 DGENNWVAYYAIDNKPVNLNGPAGTYQTDTT-------GDGNPDSTSTAQTAGGWTGSVL 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + D P G+ Q ++ QY + Sbjct: 272 KFNSVGAYIDSNPAVITTQPLGNTGAGVLGAGADGTQTLTVKFNSPTQYADPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + + L + W Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSSVALARVALVRFANEQGLTQVGN--TSWKASLA 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F IS S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGQALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|229592130|ref|YP_002874249.1| flagellar hook protein FlgE [Pseudomonas fluorescens SBW25] gi|229363996|emb|CAY51545.1| putative flagellar hook protein [Pseudomonas fluorescens SBW25] Length = 434 Score = 127 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 108/483 (22%), Gaps = 61/483 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 FN + A++Q NI N + + + T + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFSDIYAASKLGTGQNSIGNGVNL 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ ++ + F K + + R + Y Sbjct: 62 AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLE------YTRSGAFRADKDGYI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + + +A+ + + ++ Sbjct: 116 TNNTGTSRLQGYAADADGNIVKGGLTDLQLN----------------------------- 146 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A +D L I + + + T + TTL++ Sbjct: 147 ----LSYLPPKASTKVDSTSNLNSSSPVIDQATKLFDPTDTSTFTTQNSTTLYDAQGNSH 202 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + +E + Sbjct: 203 EMVQYMVKSNPNEWKAYTLIDGRNLDGTKPTTTGATAPVPATYTFDGAGKLLGVTGTGVV 262 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + P + +N I+ + QY S Sbjct: 263 GTTLTLTGWVPGTVTNG----------NWAPNNATAPNIAVNLGNVTQYNSASYRNPPTT 312 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + G L + + +K +A N L W E Sbjct: 313 DGYATGQITGLKIDGSGVLFATFSNQQSKAIGQISLASFNNEQGLQP--SGGTTWRETFA 370 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S I + VNL EL LIK + +Y + K I ++QT+ Sbjct: 371 SGQPGYDTPQAGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTI 430 Query: 476 LEG 478 ++ Sbjct: 431 IQM 433 >gi|261821159|ref|YP_003259265.1| flagellar hook-associated protein FlgK [Pectobacterium wasabiae WPP163] gi|261605172|gb|ACX87658.1| flagellar hook-associated protein FlgK [Pectobacterium wasabiae WPP163] Length = 556 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 66/429 (15%), Positives = 154/429 (35%), Gaps = 15/429 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + A +++ NI N Y R++T+ + V V Sbjct: 1 MSNLINTAMSGLKGAQVALSTVSNNISNQAVIGYSRQNTIIEQAISSSTSAGYIGNGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V+ + L + + + +E + ++ + S + I +L+ Sbjct: 61 VSVDRQYNEFISNQLRSAQTTSS--SVSTYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N + +TV+ AE +V F + + ++ + + + +I+ + + + ++ Sbjct: 119 NLTSNSGDSATRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQINTYTDQIAS 178 Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I S +D LDQRDVL+ ++++++G+ +V++ V +GT+L + Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVNQLNKLVGVDVVVQDGTVYNVALKNGTSLVQA 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +S T + V + ++ G + L+ R + +NQL Sbjct: 239 GTSNQLVAISSSNDPTRLTIGYKDQTDDVVTLNEGSLTGGSLGGLISFRSETLDGTRNQL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++A +F+ + + + V G K + + + + Sbjct: 299 GQLALAFADAFNAQHQEGYDRDGVKGGDFFSFGKSVVLNDSKNGGNAVLTPSYTDTKDVQ 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK-NFIFDPVAGINTNVTLLEYARNSIG 409 + W V L+ S N NF V T T + + Sbjct: 359 ATNYTVKYDGSNWQVTRLSDNSKFTATVDTSDNSLNFDGIKVVMTGTPATNDSFLLKPVN 418 Query: 410 WLEKNRSDS 418 + + + Sbjct: 419 DVIIDMKVA 427 >gi|307264876|ref|ZP_07546438.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920134|gb|EFN50346.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 417 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 43/478 (8%), Positives = 108/478 (22%), Gaps = 61/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + S + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + D + + L + ++ + Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPVATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + Sbjct: 173 IGGN--------------------------------------------------LNASTA 182 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 N + D S K + S + +D + S Sbjct: 183 IDADISYNIVVYDSQGGSHVATITFT-RKAANSWDWKVSSSDPAISSIDGTGTLTFDSEG 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + P + G + ++ N +S + + S + ++ Sbjct: 242 KIAPDQSGNRIATGTLTFNMDSNMTNATIGPVSLDLSKLTMFSSETDLRELSKNGNEAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 302 LENINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTM--FINTVNSGEPMIG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + K+I +D++LQ L+ + Sbjct: 360 AAGTGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVNMKR 417 >gi|332799182|ref|YP_004460681.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] gi|332696917|gb|AEE91374.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] Length = 411 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 53/475 (11%), Positives = 122/475 (25%), Gaps = 66/475 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 N + I NI N + + + + + Sbjct: 3 SMFSGVTGLRNHQVKMDVIGNNIANVNTVGFKKSRVTFQDT----------------LSQ 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + +S G + + M A +SP+ Y+ N+++ + Sbjct: 47 TMRGAASPQGNRGGTNPMQVGLGMTIASIDTIHSPSSA---------EYTGNMTDLSIEG 97 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + F T A + + +E V ++ Sbjct: 98 DGYFIVGDGLDMFYTRAGNFGFDENGNLINTANGLKVMGWQDTEKHEVPADKSPQSIRSI 157 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + +I+ ++ NN + +L I F K N+ Sbjct: 158 EIRKGMMIPASATTEINFAKNLNAETENNGTYSLPFKVYDSLGCAHNLTIEFTKTNANEW 217 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + +++N G+ + Sbjct: 218 NYNITFTDSNVTNIANNTGT-----------------------------ITFDNDGNCNI 248 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P G + IS QY + + Sbjct: 249 PAGGTMTFDL----------ANGADNMSISIDFSGTTQYAKETNVDLSYQNGYPAGTLTD 298 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + +N+ +A + L++ +N + N S + Sbjct: 299 VTTDTTGVITGIFDNGYNRQLAQVALANFDNPAGLIKAGQNMYRY--SNNSGEPQIGESG 356 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ Y V+L EE + +I ++ + ++++I +D+MLQ L+ + Sbjct: 357 TGGRGAIAPGYLEMSNVDLSEEFTQMIITQRGFQANSRIITTSDEMLQELVNLKR 411 >gi|291520177|emb|CBK75398.1| flagellar hook-associated protein FlgK [Butyrivibrio fibrisolvens 16/4] Length = 494 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 53/391 (13%), Positives = 127/391 (32%), Gaps = 23/391 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPEN 49 S A + N A Q + NI N + Y ++ T + Sbjct: 3 STFFGLTIAASGLNTAQAQINTTANNISNVNTTGYSKQVVNTVASSALRCYQSWGTTGTG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + +D+ +SSA+G + + E ++ + ++ T +K+ + Sbjct: 63 VEAKSVTQRRDLYYDEKYWNNSSALGFYEKKKYYMDQIEDYFSETNKDSGFTTVYTKMFN 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++ + N +D + K I A++V + FN A ++ ++ + EI+ + ++ + Sbjct: 123 AMSTLQGNPGDDTVRKQFISTAKQVTEYFNQLATKLDDLQNSINDEIKTAVDDINSISEK 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222 L ++ I A++ DQR VL+ K+S+++ +S + + Sbjct: 183 LAILTKQINIIEQGGGHANELRDQRSVLVDKLSKLVDVSVSEVDVKNSNYPDMQTGATYY 242 Query: 223 ----DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 +G L +T + + I ++ + G+ + Sbjct: 243 TVYINGQILVDTYEHNTLEVVSRELDQNHNQSDIDGLYEIIWTQDGNKFNSTPNGNGGAM 302 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + N + M + + + I G S + + + Sbjct: 303 KAMFEVRDGNNNENMHAYVANTTGDTITINGLSITNINELNMPTRGSVSTNNTEYTYNSF 362 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 N N + + + + ++ Sbjct: 363 SYNTDDDGNITTVTFYLNQTLTVEEQGNLIS 393 >gi|260437431|ref|ZP_05791247.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] gi|292810063|gb|EFF69268.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] Length = 579 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 58/575 (10%), Positives = 149/575 (25%), Gaps = 99/575 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M + + +S + N+ N + YVR+ + Sbjct: 1 MGMAG-LYVGLSGLQTSSNSLNTTANNLANVNTSGYVRQQVVNGDKSYNFVGTTAATTTG 59 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHS--------------------------SAIGQQR 78 V++ D + IG Q+ Sbjct: 60 QKGLGVSIAKINHVRDMFLDAAYRKEYGRQGFYDKLYDSVLEIETQMGETDYITGIGFQK 119 Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQN 137 + F ++ N + + + ++S + ++ ++ + V Sbjct: 120 NISDFLQSINEVAKTPGDNTARSALVQSAVQFIDSAQTIYKGLVNYQSNLNAEIKTTVSR 179 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVV------------------------ 173 N ++ + + K + ++ Sbjct: 180 INEIGSQLVTLNRNISKIETGGYETASNLRDQRDMLLDELSSYCKITYNEGDNGSVEVYI 239 Query: 174 ----------NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND--MVVYT 221 ++++ K D D + S I+T + ++ Sbjct: 240 EGNKFADEMSYNSLQCKAFQGTDLVDIVWPAFNEESLYSYSEVIATSKNTDIGGLKGLFI 299 Query: 222 SDGTTLFETVPRDINFEKMNSY----TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + G + D+ + Y NP ++ +V + + Sbjct: 300 ARGASTPTYEHADMKEPVPDDYITAQYPDGTGNPEYLRRKNEYDLYTQSVDTSALVNTIA 359 Query: 278 IRDSVVPIFQNQLDEMA-----------RVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 D ++ +++ + + + + + Sbjct: 360 NFDKLISSMVQEINNVFCPEKVITIGGKEYTVLDTDKAPTTTDGEYGIELFTRDFCDRYT 419 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + +N ++ SV+K + + + + + Y + Sbjct: 420 VTNINGTDYYVRNNINTFGNNSAYTIMNISVNKDIVQDYSKIPLSGNGGDAYNTAKELVD 479 Query: 387 IFDPVAG----INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 +F +T E+ + I + + + + + + +GV Sbjct: 480 VFSKKIMRYNDSFDGMTFEEFYESMINDVANTGKIYNSMSTNETTLASQLDNQRQQVMGV 539 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EELS +IK +Q+YN S++ I D M+QTL+ Sbjct: 540 ASDEELSNMIKFQQAYNASSRFINVIDDMIQTLIN 574 >gi|168234103|ref|ZP_02659161.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468943|ref|ZP_03074927.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455307|gb|EDX44146.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331935|gb|EDZ18699.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 425 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 54/476 (11%), Positives = 109/476 (22%), Gaps = 56/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q A A K + + Sbjct: 116 LTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQVN--------------LNST 161 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A + D D I + N +DM +Y + ++ Sbjct: 162 DAKPAKNPFDPSDANTYNKKGSITVYDSQGNAHDMSIYY---------------VKNDSN 206 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + Q G + + R + P D Sbjct: 207 KWDVWTLDSSVAGATANKAAQMHFTENGTLDEIYNYRLTSTPPASPTWDLATTPNPEKQI 266 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N + Q + + + + K Sbjct: 267 QIITGTIN----------------GATPADFSLSFLNSMQQNTGSNNIVATNQNGYKPGD 310 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 311 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 368 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 369 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 424 >gi|242238975|ref|YP_002987156.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech703] gi|242131032|gb|ACS85334.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech703] Length = 551 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 76/541 (14%), Positives = 167/541 (30%), Gaps = 77/541 (14%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SENKNM 62 A ++ NI N+ Y R+ + ++ Sbjct: 12 GLKAAQVALSTTSNNISNSSTDGYNRQSVSLAQTSGTTKTYGTVGNGVSVVSVDRAYDSL 71 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L + SS Q +E + ++ ++S + +S +LES S+N S+ Sbjct: 72 VVSQLRSASST--YQATSAYYEQVSQIDDLLSDSDSSISTLMSSFFTALESLSENASDTS 129 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +TVI +AE +V F ++ + ++ + + + I + + ++ +N I Sbjct: 130 ARQTVISSAESMVNQFVSTDQYLRDMDSAINSSISSSADQINSYTQQIATLNKQISQLGT 189 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S A+ LDQRD L+ ++++I+G+ + ++ + V +G TL + +S Sbjct: 190 SGSAANQLLDQRDQLISELNDIVGVDVTTQ-DSMVSVSLKNGLTLVQGDTSYSMKAVTSS 248 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + G + LL R S + ++QL+ +A L SF+ Sbjct: 249 SDSSRTVLAYDTGVGDPIELDEDDLQSGSVYGLLNFRSSALDSARDQLNLIALTLADSFN 308 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + G ++ D K Sbjct: 309 TQHKAGIDLNGDAGTDFFSFSSPTVVSNSNNSGSATLTASYTDTSSVQASDYVLSYKSGS 368 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFD----PVAGINTNVTLLEYARNSIGWLEKNRSDS 418 W+V + + + N + + + ++ N++ + + S + Sbjct: 369 WSVTKSSDGSSVSYTTGSDSSGNTTLSFDGVEITVSGSASSGDKFTLNTVSDVISDLSVA 428 Query: 419 -------------------------------HDLHMKSQVVFNHISESYSNTVGV----- 442 + + N + + +GV Sbjct: 429 ISDPALLAAGQDDSSTGESDNRNASALLDLQNSKLINGNTTLNSAYAALVSDIGVKTSGA 488 Query: 443 ------------------------NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 NL EE L + +Q Y + K++ + + +LL Sbjct: 489 ETKSETQSTIVDQLTEKQQSVSGVNLDEEYVDLQRYQQYYTANAKILSTANTIFDSLLSA 548 Query: 479 V 479 + Sbjct: 549 I 549 >gi|146293690|ref|YP_001184114.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145565380|gb|ABP76315.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] gi|319427089|gb|ADV55163.1| flagellar hook-basal body protein [Shewanella putrefaciens 200] Length = 453 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 49/483 (10%), Positives = 107/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI NA+ + N V Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ F + D + +Y Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFS----YTRAGAFKVDASNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + L +D T+A+ VQ +S Sbjct: 118 VDSSGNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGSPVKTENVS-------------F 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D D + I + + M Y + Sbjct: 165 QMNLNAKEGSLDPAAFDPTDPKTYTSVTSMTIYDSLGEPHIMTTY------FVKPTNGAH 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N E + + + G + + + Sbjct: 219 NGENNWVAYYAVDGKQVDVAGAAGTYQTDTD-------GDGVPDSTGTAETAGGWRGSVL 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G+ Q ++ QY + + Sbjct: 272 KFNSVGVYTGSDPAIVTTETLGVGGAGVLGPGADGTQSLTVKFNAPTQYSAPFAATELTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + + L + W Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLN 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F +S S ++L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|269103183|ref|ZP_06155880.1| flagellar hook-associated protein FlgK [Photobacterium damselae subsp. damselae CIP 102761] gi|268163081|gb|EEZ41577.1| flagellar hook-associated protein FlgK [Photobacterium damselae subsp. damselae CIP 102761] Length = 661 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 50/421 (11%), Positives = 133/421 (31%), Gaps = 17/421 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 L + + + +Q NI N + Y R+ + Sbjct: 3 LDLMQIGMSGLRTSQKQLDVASHNISNVNTPGYSRQVVEQKADDAFYNGSNYYGTGAYID 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + L ++ + + + Q + + ++ N + ++ +S+ S Sbjct: 63 NVSRAYDQFAARELTLSTTHLEEANVRQQNMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + ++ +TV++ A++ Q+F TS + + + D +I + + + EL V Sbjct: 121 LSDHPNDLGARQTVLEQAKQTAQSFQTSHQTLTNMHQDVTDQIGVSLERINTLGQELAAV 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232 N +++ + AS +D D++ L+ ++++ ++ + + V G TL V Sbjct: 181 NTSLQEQAASGKS-NDLFDKQRSLINELAKYTKVTVLADKGSLANTVIIGSGDTLVSGVT 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + G + +LL IRD+V+ +++ Sbjct: 240 SAKLKLVNGKPDTQTQQIALVTGNSAKEIKSDGI--GGSLGSLLDIRDNVIDKSLDEMGR 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV-NPQYRSNPSFL 351 MA ++ + G + + + + I Q + Sbjct: 298 MAIGFSKQINDLQQQGVDLNGEQGALLFSDVNSVSAMQQRAIKPLGSNAEIQVSIDDVNQ 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G ++ N + + + ++ ++ + + Sbjct: 358 LKTGDYQLDMNFDGTNYNYTVTDQDGKQTTISDTSQKQSLSVDGFSINIEKAFSTPTAGQ 417 Query: 412 E 412 Sbjct: 418 S 418 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 50/415 (12%), Positives = 123/415 (29%), Gaps = 17/415 (4%) Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 AL SA + ++ + L D ++ +++ + + + + + Sbjct: 251 DTQTQQIALVTGNSAKEIKSDGIGGSLGSLLDIRDNVIDKSLDEMGRMAIGFSKQ--IND 308 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 ++ + +S +++ + N I+ + Q D+ Sbjct: 309 LQQQGVDLNGEQGALLFSDVNSVSAMQQRAIKPLGSNAEIQVSIDDVNQLKTGDYQLDMN 368 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + ++ + + + + +I SES I Sbjct: 369 FDGTNYNYTVTDQDGKQTTISDTSQKQSLSVDGFSINIEKAFSTPTAGQSESILIRPVRD 428 Query: 258 VVSSNQGSAVPKGKIKALLQIR-------------DSVVPIFQNQLDEMARVLIGSFSEK 304 ++ K+ Q+ VP + L + + + + K Sbjct: 429 GAANMAVEMSDPKKLAGHSQLAVMPHQANQGSASVIKTVPQLSDALAGVYELKVNNSGNK 488 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + P I D ++ + S L + Sbjct: 489 ISLINQATGQPMTLIDDKGSEVTELGYDSAKPQNLTVKTDAGDLSGLALQAGALAGDSFQ 548 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + N + + + N ++++ + + + ++ Sbjct: 549 LNLGRAQATGGNG--NFLAMQQVQAQKSMNNGKSSVIDLFQKLSTDIGMAKKNADQTAEV 606 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q+ F+ SE SN GVNL EE + L+K +QSY S++++ + TL+ V Sbjct: 607 TQLDFDAASERVSNLSGVNLDEEAANLMKFQQSYMASSRIMSVAKETFDTLMRAV 661 >gi|291524892|emb|CBK90479.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 477 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 47/484 (9%), Positives = 124/484 (25%), Gaps = 13/484 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + + + T T N Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGT---SAGNG 57 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ IG + + + N ++ + + + + Sbjct: 58 AAGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117 Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + + +Q + DA + I + L ++ + Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGNV---IKDTVSSLQVMSSATKTSAPEA 174 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 +K LD+ D II I + T + + ++ Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234 Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 S + V + N I G + + + + V + ++ Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + +++ + ++ L+ G Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGDLQGDGK 354 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + VA L + N + Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGE 414 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 S IS V+L + + +I ++ + ++++I +D +L+ L+ Sbjct: 415 FDGIGVEISADG-GSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473 Query: 477 EGVK 480 + Sbjct: 474 NLKR 477 >gi|330811235|ref|YP_004355697.1| flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379343|gb|AEA70693.1| Putative flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 432 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 108/476 (22%), Gaps = 49/476 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---QRSENKNM 62 FN + A++Q NI N + + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATKLGSGSKTVGNGVRL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + + + + + E Y N Sbjct: 62 ANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSNDGSLSYTRAGTFKTDKEGYITNSDGTS 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +A +Q + +R D S + ++ Sbjct: 122 RLQGYGVDANGKIQ-----NGILTDLRIDTSNLPPSATSLVSSTINLN------------ 164 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S I+ ++ T +++T + ++ Sbjct: 165 -------------------STATAITAAFNPSDTATFTKQFTTPVYDTQGNQHSMDQYMV 205 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + N + + + A V Sbjct: 206 KTAGNTWNVYTLIDGRNLNGTLPTTTGATAPVPSTMNFDSNGKLTTVTTPPATVNSDLVL 265 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + V I+ ++ Q+ ++ + + Sbjct: 266 TGWVPGTVTNGV--------WAANGAASAPTITISMGNTTQFNADTARSIPTQNGYATGQ 317 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + G L+ ++ ++ K +A L W E S Sbjct: 318 ITNLTIDGSGVLLANFSNNQTKPIGQLALASFTNEQGLQPVGG--TSWKETFASGIPGYD 375 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + VNL EL LIK + +Y + K I ++QT+++ Sbjct: 376 APQTGTLGSIVSNSLEESNVNLTNELVELIKAQSNYQANAKTISTQSTIMQTIIQM 431 >gi|296135666|ref|YP_003642908.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12] gi|295795788|gb|ADG30578.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12] Length = 667 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 55/398 (13%), Positives = 125/398 (31%), Gaps = 15/398 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 + + N A A NI N + Y R + + Sbjct: 3 GISGLLNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQ 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + + ++ L + + A S T + Sbjct: 63 IDAVTRSYNSYLQSQVWSTAATASGANTLNTQIQPIANLIAGTDSGLS-TSINQFFASGV 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + N ++ +++I ++ + Q TSA+++Q ++++ ++ + ++ Sbjct: 122 AQVAVNPADIPSRQSLISQSQSLAQTIQTSAQQLQSAANGVNQQLGQSVTAINSLTQQIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + + + LDQRD L+ ++S +G++ + ++ N + V+T +G L Sbjct: 182 QLNVQINTLSGTGSTPNSLLDQRDQLITQLSGQVGVTVLPQDGNQVNVFTGNGQVLVAGA 241 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++Y + +G V+S LLQ R V+ QN L Sbjct: 242 QSFDLKTTPSAYDPSQLEVAYASNGAVLSQGLQGGTL----GGLLQFRSQVLQPAQNALG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L + + + + G + + +N Sbjct: 298 RIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVISGSVVDANALTT 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 D W+V NL+ + + + Sbjct: 358 ADYRLNYDGSNWSVTNLSTGQPVSGATVGASGSATVLS 395 Score = 41.9 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 30/415 (7%), Positives = 95/415 (22%), Gaps = 5/415 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--- 96 V V +S + + + + Sbjct: 226 QVNVFTGNGQVLVAGAQSFDLKTTPSAYDPSQLEVAYASNGAVLSQGLQGGTLGGLLQFR 285 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + L + + ++ ++ + + + I Sbjct: 286 SQVLQPAQNALGRIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVI 345 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + +N + + + V + ++ + N + Sbjct: 346 SGSVVDANALTTADYRLNYDGSNWSVTNLSTGQPVSGATVGASGSATVLSFDGVQVNVSG 405 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + + T +NF+ + + + ++ + L Sbjct: 406 AQA--GNSFEVQPTRYGALNFQSVLTNPTQIAAASPYVSSAGQMQSGSLVNTNLGNLTLS 463 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + S + A V + + + L + Sbjct: 464 AGQYSATSGSSALVISGASVPTPLQVTLTGGGTSGAVGFQVTQSGSATVLASGSLSLGGS 523 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 ++ Y +NP +++ + P + ++ + Sbjct: 524 GQVLSIPYANNPPGGYWNVTLAGSTAVSGDAFTLSPASGGNGGNAQAMAALQTAKTLEGG 583 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + +L + + + + + V S + + GVNL EE + L Sbjct: 584 STSLEGAYSQLVSQVATQGNQAQSALSAASAVAAQASAAQQSVSGVNLDEEATNL 638 >gi|241589577|ref|YP_002979602.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] gi|240868289|gb|ACS65948.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] Length = 641 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 60/443 (13%), Positives = 145/443 (32%), Gaps = 17/443 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50 MS ++ N + A I NI N + Y R++ + T + Sbjct: 1 MS-SSLLNIGASGLRTAGIHLQVIGSNIANVNTPGYSRQEVVQTENPPHYGGVGDLGQGA 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V T + + + +A L S + +D N+ + ++ D+ Sbjct: 60 NVATVKRIYDQFLAAQVQSSQAAASSANQLNSLLSNLSQFMSD--RNSGLSSALTSFFDA 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S+ + + FN A + + + +++ +I + + ++ Sbjct: 118 ADGLVSKPSDATARHVFLGAISGLQSRFNLIAEQASALADQVNSQVQTQIGAVNGAVRQI 177 Query: 171 TVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +ND I +S A+D DQRD L+Q +++ I S++ ++ +Y +G L + Sbjct: 178 ASLNDQIVKAESSAGAPANDLRDQRDQLVQTLNQSIKASSVETSDGQYNIYVGNGQALVQ 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + Y + S V + + + G + L++ R + QN Sbjct: 238 GNRSFELTTVPSPYDPSQLSVGYKSPAGTVIVD-DAQLGGGALGGLMEFRSKTLIQAQNG 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +A + + + + ++ G I + + Sbjct: 297 VGRLAAAISAEVNAQSRLGMDANGKMGGDIFSVAGPSVMPRSDNRGSATLTASITNATAT 356 Query: 350 FLRDGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 D + ++ V ++ + + + + + + L+ N+ Sbjct: 357 PAHDYQLRYQGGVYTVSRYPDGSKATVVTTWPATVDGIRLNLSGTMHSGDSFLVRPTANA 416 Query: 408 IGWLEKNRSDSHDLHMKSQVVFN 430 ++ +D + S VV + Sbjct: 417 AATMKVLTTDYRTIAASSAVVAD 439 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 39/453 (8%), Positives = 107/453 (23%), Gaps = 19/453 (4%) Query: 44 TISPENVTVVTQRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 S R + + SS + + + + T Sbjct: 187 AESSAGAPANDLRDQRDQLVQTLNQSIKASSVETSDGQYNIYVGNGQALVQGNRSFELTT 246 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L K+ + ++ + ++ + + + + + Sbjct: 247 VPSPYDPSQLSVGYKSPAGTVIVDDAQLGGGALGGLMEFRSKTLIQAQNGVGRLAAAISA 306 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + N + S + ++ I + +D + Sbjct: 307 EVNAQSRLGMDANGKMGGDIFSVAGPSVMPRSDNRGSATLTASIT-NATATPAHDYQLRY 365 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 G P + ++ T + + + G + S + P A +++ + Sbjct: 366 QGGVYTVSRYPDGSKATVVTTWPATVDGIRLNLSGTMHSGDSFLVRPTANAAATMKVLTT 425 Query: 282 VVPIF----------------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + ++ + + N+ L G Sbjct: 426 DYRTIAASSAVVADVGGNNRGSGAVTSVGINVVAFPAAAVKLTYNASAGGSLTGFPGSVT 485 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + Q + + L+ ++ Sbjct: 486 VTFNGKSTTYAGSAPYVQGATYAFNGIHMMMTGAPANGDTFKLSPNVANSTDSGNASTLA 545 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + V++ N + + + V+ GVNL Sbjct: 546 KLRNASLLDGGTVSVGAAWHNLVTQVGIQAHQAAGNLTSQTVLHRSAVSQQQAVSGVNLD 605 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE L++ +++Y S K++ + + TLL Sbjct: 606 EEAMKLMQYQKAYQASAKVMQTANSLFDTLLSM 638 >gi|167034944|ref|YP_001670175.1| flagellar hook protein FlgE [Pseudomonas putida GB-1] gi|166861432|gb|ABY99839.1| flagellar basal body FlaE domain protein [Pseudomonas putida GB-1] Length = 440 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 51/485 (10%), Positives = 120/485 (24%), Gaps = 59/485 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENVTVV 53 FN + A++ NI N + T V Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKNTVGTGV 61 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + ++ ++ A+ F + + + + Sbjct: 62 KTAAVSQLFTPGNINGTGQALDMAIDGNGFFVMSDN-------GSKIYTRAGAFYSDKDG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y N S L +D ++ Q T +L+I + + Sbjct: 115 YVVNASGSKLQGYAVDANGKITQGVLT----------------DLQIDTSNLTPNPTGKI 158 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 ++ + +++ A D + + + N + + Y T Sbjct: 159 SENVNLNSSATAPAVTPFDPANTGTYNYTFNTDVYDSQGNAHQLNQYFVKDATSNSWTMY 218 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + ++ + + +A+ G + + I Sbjct: 219 TTIDGRNPADPTSTTPLANKLPFKSDGTLDTAAMTAGPVAGGMTI--------------- 263 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + K N + G++ + QY + + Sbjct: 264 -------AANKSFTLDNWIPAQKNAAGVWGANGATANVAGVNLDMLGTTQYNAASATTAK 316 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + ++ ++ + +K +A L W E Sbjct: 317 SQDGFATGELSGLTIDQSGNMFANFTNGQDKVIGQVAIANFANLQGLTPIGG--TNWKES 374 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + I+ V+L EL LIK + +Y + K I ++Q Sbjct: 375 YASGVPVIGAPDTGTLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434 Query: 474 TLLEG 478 T+++ Sbjct: 435 TIIQM 439 >gi|149675698|dbj|BAF64728.1| flagellar hook protein [Shewanella livingstonensis] Length = 459 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 44/483 (9%), Positives = 106/483 (21%), Gaps = 36/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55 N A + A + + NI N + + T Sbjct: 2 SLNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYADSIFSNSKTAVGGGATT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+++ F + + D + +Y Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQS----YTRAGAFKVDSSNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ + ++ + T ++ Sbjct: 118 VDSAGNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGSPVQTGNVGLQMNLNVSETALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D S + I + ++ M Y + Sbjct: 178 -------------ANFNPADSDTFNNSTSVTIYDSLGESHIMTTY------FVKPTNGSY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + +P+ + + + + + + Sbjct: 219 TGESNWVAFYAVDGDPVDVASGPGTYSTDTDGDSIA-DGTGTVSAANPGGAAGTWSGAVL 277 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G Q ++ QY S Sbjct: 278 KFNSVGAYTGSDPAIITTEALGTGGAGALGPGADGTQTLTIKFNSPTQYSSPFEVTELTQ 337 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y + + L + W Sbjct: 338 DGITVGRLTNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLD 395 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 396 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLNQTI 455 Query: 476 LEG 478 L+ Sbjct: 456 LQI 458 >gi|299131803|ref|ZP_07024998.1| flagellar hook-associated protein FlgK [Afipia sp. 1NLS2] gi|298591940|gb|EFI52140.1| flagellar hook-associated protein FlgK [Afipia sp. 1NLS2] Length = 610 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 64/442 (14%), Positives = 147/442 (33%), Gaps = 19/442 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRSENKNMFDK 65 + + + N+ N + YVR+ V+V E K Sbjct: 1 MSGLRANQAALSLVSSNVANIETPGYVRKTVNQVQTTTGTGSAGVSVTGVNRELDVYVQK 60 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + +S L + + + D + + ++L +L++ S + Sbjct: 61 QVLTETSGASYASTLSAALQRLQGIYGDPSSDTTLEAAFNQLTAALQALSTSSDSPAARS 120 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T ++ A+ + Q N+++ +Q +RADA+ I+ + + ++ +N+ + T Sbjct: 121 TAVNAAQSLAQMLNSTSAGIQSLRADAESSIKSSVDAANNAMQQIATINNQLLGTTGDDA 180 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A LDQRD + ++S+++ I + + N + V+T+ G L + I F+ + T Sbjct: 181 AAASLLDQRDQYITQLSQLMDIRVLTNDRNQVTVFTNSGVQLVGSEAAKITFDAQGTVTP 240 Query: 246 TSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + N F G + +++ G I A LQ+RD + Q Q+D++ Sbjct: 241 NTTWNSDPSKSTLGTLTLTFPHGGDIDLIATNSIRSGSIAANLQLRDQTLVQAQAQIDQL 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + + S D + +S G + + + T + ++ Sbjct: 301 AASMASALS--DKVTTDSTGNGGSPNTFSLDLTGLQNGNNVQFTYTDTANKSHTITLVQV 358 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + N + + + ++ Sbjct: 359 NDPSVLPLKNSATNNPNDEVFGVDFSQGMGPALTQLTALLGDRGLQFSSSGGQTLQISGD 418 Query: 414 NRSDSHDLHMKSQVVFNHISES 435 + S + +++ Sbjct: 419 AGGTAVVNSASSTITMTNLTSG 440 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 40/427 (9%), Positives = 115/427 (26%), Gaps = 8/427 (1%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ D+ + + ++ + +K+ + + Sbjct: 184 SLLDQRDQYITQLSQLMDIRVLTNDRNQVTVFTNSGVQLVGSEAAKITFDAQGTVTPNTT 243 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + ++ + I + + L + D + Sbjct: 244 WNSDPSKSTLGTLTLTFPHGGDIDLIATNSIRSGSIAANLQLRDQTLVQAQAQIDQLAAS 303 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---GTTLFETVPRDINF 237 AS D + + ++ + NN YT T+ D + Sbjct: 304 MASALSDKVTTDSTGNGGSPNTFSLDLTGLQNGNNVQFTYTDTANKSHTITLVQVNDPSV 363 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + ++ +F + S + Sbjct: 364 LPLKNSATNNPNDEVFGVDFSQGMGPALTQLTALLGDRGLQFSSSGGQTLQISGDAGGTA 423 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + N + + + + R + + L Sbjct: 424 VVNSASSTITMTNLTSGNPQLPLFVDNGVPYTGAITATGSQQTGLAGRISVNNLLLADPS 483 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-----VTLLEYARNSIGWLE 412 + N ++ P GI +N T+L + + Sbjct: 484 RMIVYGSGTQSGDTTRSDFILSQLTNSSYYVSPQTGIGSNATPFKGTMLSFLQQFTTMQG 543 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + L VV + + +++ GVN+ +E++ L+ ++ +Y+ + +++ M Sbjct: 544 QAASSAQQLADGQNVVLSTLQNKLNSSSGVNIDDEMAHLLALQNAYSANARVMSTVKDMF 603 Query: 473 QTLLEGV 479 +LL+ V Sbjct: 604 DSLLQSV 610 >gi|163789663|ref|ZP_02184101.1| Flagellar hook-associated protein [Carnobacterium sp. AT7] gi|159875195|gb|EDP69261.1| Flagellar hook-associated protein [Carnobacterium sp. AT7] Length = 361 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 126/374 (33%), Gaps = 17/374 (4%) Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +SK+ S N V N+E + + ++ + A ++I+ + + Sbjct: 1 MSKVFASWTYLGSNPELATAKTMVAQNSETFTDTLHHMSNQIDNLHAGTVQDIKKNVLDF 60 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 +++L +N I T+ +D LDQ+D +L ++S I G+ N + V Sbjct: 61 NSKVTQLDSLNKQIFNMTSQGQAPNDLLDQQDKILSELSGIAGVEATYDKFNRVSVSIGG 120 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L E +++ K G + +++ + G IK + + Sbjct: 121 QPVLTEKSIAELSVAKDPV-------------GQLTVNDKTVDITSGTIKGSQEALVEID 167 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 Q+ L+E+A + ++ G + L + Sbjct: 168 VKKQD-LNELAYTFATAVNKVHSDGGKGTDFFDLSETVDGNYAASIQVNKEILNDVSKIN 226 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 N + G + + ++N D T+ Sbjct: 227 AGKNIETVVGGDGTRAQAIAALQNTKLDYSTNPLELKYNETTMTIDNQ---PGGSTVAGA 283 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +S+ + + S ++ + + + + GV++ EE++ I + ++ +++ Sbjct: 284 YNDSVTQMGIVKQQSDNMVDSQGSLVSLLEARRDSVSGVSINEEVTNTITYQSAFEANSR 343 Query: 464 LIMFTDKMLQTLLE 477 +I +ML TL+ Sbjct: 344 IISVVSEMLDTLIN 357 >gi|87119670|ref|ZP_01075567.1| Flagellar hook-associated protein [Marinomonas sp. MED121] gi|86165146|gb|EAQ66414.1| Flagellar hook-associated protein [Marinomonas sp. MED121] Length = 659 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 55/400 (13%), Positives = 139/400 (34%), Gaps = 12/400 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 +++ + +S Q + +N N + + Y R+ T + V V + + Sbjct: 4 DLYSIGLSGVLASSAQIVTTGQNTANVNTEGYNRQSTNLSTLQNGGVQVGSTKRVVDEFV 63 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + + A +S + + + +D S Y++ DSL+S + + ++ Sbjct: 64 NTQMRADTSNFNYFESYYQQGTIADEIFSD--KATSLNTYLNNTFDSLQSVNSDPTDIGT 121 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 K + + +V +FN A Q ++++ + + + S++ +N + + Sbjct: 122 RKIAHTDLKNLVSHFNELASFSQDQTNLVNEQLTSNVDIINEYASQIADLNGKVLVQETV 181 Query: 184 KHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A++ D ++ + ++ISE + + +N+ M + +G L + + Sbjct: 182 GGSKANELRDSQEEIARQISEYLDVKISYDDNDLMELQLGNGQPLVLQNSVNKLSLSPSE 241 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y S + + +D + G I L+ R + + L + A V+ S + Sbjct: 242 YD--STTYDLVLDFEEYELGIDTTDLGGSIGGLMDYRANFLEELDRNLGQQAIVISDSVN 299 Query: 303 EKDPIAGNSENVPGLFIADGIK------DLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 +++ + + G + D + ++ L + + + + Sbjct: 300 QQNRLGLDVNGNYGKSLFDLAEIKVSQSQKNSSLIHQVDVRVEEGKASEISTDTYEIIMT 359 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 S F ++ G + D D I Sbjct: 360 SSTSFELRSYDVDGSSTAPAQFYDMNQVERTPDGYFSIPG 399 Score = 87.4 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 48/411 (11%), Positives = 114/411 (27%), Gaps = 18/411 (4%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA- 142 E+ S + + LE +NL + + + N + + Sbjct: 253 FEEYELGIDTTDLGGSIGGLMDYRANFLEELDRNLGQQAIVISDSVNQQNRLGLDVNGNY 312 Query: 143 -------REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 E++ ++ + + ++ + D + S D Sbjct: 313 GKSLFDLAEIKVSQSQKNSSLIHQVDVRVEEGKASEISTDTYEIIMTSSTSFELRSYDVD 372 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 ++ ++ + R + G I F +++ + S Sbjct: 373 GSSTAPAQFYDMNQVERTPDGYFSIPGIGLEFNLQADEKIGFRPGDTFQFSPTSLAAANI 432 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 ++ +S A+ S I + + DP G + P Sbjct: 433 TLISTSGDDLAMNAPIQVGNSSDNLSDAKISISSVSNTDAGFS----AFDPEGGLYQFAP 488 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 D G+ + + + + AG I Sbjct: 489 QAIRFTSEDSFDVLDQDGLILAKVAGAETYVDLLAQAGLDESGYDVSLSSRPAAGDTFTI 548 Query: 376 NHYCDSFNKNFIFDPVA------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + N+ +A + + + + +++ + + + S+V+ Sbjct: 549 SFNESGRHDNYNGRALADLQNKSLVAGSQSFADAYTSTVARIGNLTNTAKTNMESSEVMM 608 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE LI+ + SY S+++I +K QTLL ++ Sbjct: 609 EQSIARRDEVSAVSLDEEAVNLIRYQNSYAASSQVISAAEKSFQTLLNSLR 659 >gi|225849153|ref|YP_002729317.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] gi|225643172|gb|ACN98222.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] Length = 409 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 52/479 (10%), Positives = 126/479 (26%), Gaps = 71/479 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L F A + N + I NI N + + Sbjct: 1 MLQSFYTAVSGLNGNQKWIDVISDNIANVNTIGFKSERVTFEDLVAKSLTT--------- 51 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH-YISKLRDSLESYSKNLSED 121 A+++ + SF AL + + N+ ++ + N Sbjct: 52 -----FANNTPKNMEIGGGSFIALTTKDFSQGSFQNTVNPLDLALDGEGFFMVKDNQGTV 106 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + N ++Q + D I + + S L + I Sbjct: 107 YYTRAGQFRLDANGDIVNVDGMKLQGWKLDTAGNISAALDKINIPYSILPSITTKINLVE 166 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + D S + IS + N ++ T+++++ Sbjct: 167 PTNLD---------------SRVNTISGTIDPTNPATFNYANSMTIYDSLGNPHTLTFYF 211 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + N V +N + V G ++ DS + ++ L Sbjct: 212 QKSSPNTWNVAAY----VDNNTTTPVGSGTLQ-----FDSTGKLISGSPITLSIPLTNGA 262 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + + ++ K Sbjct: 263 TTPQTVTVDLT----------------------------QVKQVASDFIFYANQDGFAKG 294 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 +++ + Y + + VA L+ N + S Sbjct: 295 DLIGVSVSEDGVVRGMYSNGKVELIARLAVATFKDKEMLVRKGNNLY----LPNTQSFTP 350 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + + V++ +E LI +++Y + ++I D++LQ + + Sbjct: 351 IITPGGILSKVRSGFLELSNVDISKEFINLITAQRAYQANARVITTDDQILQEAMNIKR 409 >gi|83859394|ref|ZP_00952915.1| flagellar hook-associated protein FlaN, putative [Oceanicaulis alexandrii HTCC2633] gi|83852841|gb|EAP90694.1| flagellar hook-associated protein FlaN, putative [Oceanicaulis alexandrii HTCC2633] Length = 708 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 8/400 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 M+L +V A + + + N+ N + Y R + T V V Sbjct: 1 MALNSVIGNALSGLRASQLGLRTASNNVANVNTPGYARTELAITSRNVAGQGMGVDVRGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +S S + +S ++ DSL + + Sbjct: 61 ERITDEYLLAASVRANSDFSAATARYSALDRLQAQFGSTSDESSIFGRLNAAFDSLSAAA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + +E + + + + E++ +R +AD I I + L E+ +N Sbjct: 121 ADSAETVARLSAASELQTFFDETQRLSVEMRTLRNEADTRIGSGIGRINEILKEMQDLNL 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + AS D +++ LL ++S I + T + + + V T+DG L + + Sbjct: 181 QAQSLNASSADTSGAANRQVELLDELSSYIDVRTNRQPDGRVFVSTADGVALLDNSRLQL 240 Query: 236 NFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + I + + + G+++ L+ +RD +P L E Sbjct: 241 EYTPAGTGAYGLDYGEITAVVSASGARVDLTQNITSGELRGLIDLRDKDLPQLAAALAEY 300 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + + A P + + QG Sbjct: 301 AAGAADALNAAHNDATAYPP-PNTLTGRDTSLVGADVLQGSGAATLAIVNNDGTLVQQVA 359 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 F + DL+N + N G Sbjct: 360 ITVTGTGFTVDGNAANSITDLVNEINTALGGNGTASFTNG 399 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 41/365 (11%), Positives = 93/365 (25%), Gaps = 5/365 (1%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N ++ + I +A + + + + + ++ Sbjct: 348 VNNDGTLVQQVAITVTGTGFTVDGNAANSITDLVNEINTALGGN----GTASFTNGRLSI 403 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A D + + + + G++ IV ++ T T + Sbjct: 404 DAANANHGVALAQDSANPSSIGGRGFAHYFGLNDIVDSDRPAFFETGLTATSAHGLAGGG 463 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + I + + L + Sbjct: 464 VMSFKVLGPNGGRTADIDVSVAGATIQDQLNALNAAGTGLGAYGSFGMDGNGEISFTPNA 523 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 F ++ + + + S + Sbjct: 524 GFEQYEVVVTGDTSVRTGTGKSFTTIFGMSDGARMSRAEGFEVRPAIRSDSTLLSMAKLD 583 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKN 414 ++ AG + FD + + TL+EY G + Sbjct: 584 VTGATVPGDLVVSAGDNRGGQELAAAGQAKRTFDDAGNMKGGMSTLIEYGARVAGKVGSV 643 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + ++ V S+ GV+L EEL+ +I+ +QSYN + +L+ +M T Sbjct: 644 AAAAQRAETAAESVKEAADIKRSDVEGVSLDEELARMIQFQQSYNAAARLLQAAREMSDT 703 Query: 475 LLEGV 479 L+ V Sbjct: 704 LINIV 708 >gi|32266375|ref|NP_860407.1| flagellar hook-associated protein FlgK [Helicobacter hepaticus ATCC 51449] gi|32262425|gb|AAP77473.1| flagellar hook-associated protein FlgK [Helicobacter hepaticus ATCC 51449] Length = 606 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 49/430 (11%), Positives = 131/430 (30%), Gaps = 28/430 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 +L+ N + NI NA ++ Y R+ + V+ Sbjct: 3 GILSSLNTSYTGLQAHQLMVDVTGNNISNASDEFYSRQRVLVRPERPLYYQDYNLGRGVS 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + T + + + + + + + + ++ Sbjct: 63 IETIQRIHDEFVFNRYRKAAEEAQYYDTHFTTLREASAFF-PEVDGVGIYNDLEEYFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN ++ + + N + + N + + +++ +E+E+ I+ + R E+ Sbjct: 122 KDLAKNSTDPAQKQVLAKNTQVLSTNIKDTRSRLVRLQQKVSEELEVTINEVNRIAKEIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217 +N +K + A++ D+RD L + +IG + + + D Sbjct: 182 HINGKLKEMEDQRELKQANELRDRRDELEYNLQTLIGANVFKNHLDSNASIHPKLADFDD 241 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276 + G + + N ++ G + + +GK +L+ Sbjct: 242 EYVLNIGFGFNIVDGAMFHPLVLKKDDNHLNLNRVYFQGDDFKTVEITDKIVQGKAGSLI 301 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + +S + + + F++ A N+ LD + + Sbjct: 302 SLYNSGAEGTRVGKIQDYINHLDIFAKGFIEATNAIYSQSAATQIRSDKLDVWSLNALVD 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + G + N+ + D++ ++ + N D A + Sbjct: 362 SNYNIKEGSFDIVVYNTQGEEIARKTINIDRITTMNDVVRAINENTDDNK--DNNALNDV 419 Query: 397 NVTLLEYARN 406 + Y N Sbjct: 420 DDYFRAYYDN 429 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 10/247 (4%) Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + N+ I ID + ++ A+ + + V + + Sbjct: 370 SFDIVVYNTQGEEIARKTINIDRITTMNDVVRAINENTDDNKDNNALNDVDDYFRAYYDN 429 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 ++ G L+ L + I +N +Y + + +R Sbjct: 430 GAREFNILAKNPSQGLYIAIQDKGSNFTGAFGLNKFLDGDDAHNIALNQEYVKDATLIRP 489 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + G ++ N + F + + EY + G + Sbjct: 490 W----------LTPVNGNFEVANMMQQLQYDDVDFYINKYEKKQMRIPEYFQFLAGRVAN 539 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + V + + + + V+L EE+ LIK + Y + K+I D+M++ Sbjct: 540 QTEATQRTKETKDAVLSAVKKEHLAISQVSLDEEMVNLIKFQGGYAANAKVITTIDRMIE 599 Query: 474 TLLEGVK 480 TLL + Sbjct: 600 TLLGIKQ 606 >gi|326792655|ref|YP_004310476.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] gi|326543419|gb|ADZ85278.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] Length = 645 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 56/419 (13%), Positives = 121/419 (28%), Gaps = 21/419 (5%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQ 55 FN A + A + NI NA Y R+ + V Sbjct: 6 FNVALSGLFAAQRGLHVTSNNITNASTDGYSRQILGQRADTPLSGFGVGMTGTGVMTTNV 65 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + D L + +G+ + + +L E + + T + L +S + S Sbjct: 66 TRVRDSYLDLKLWTQNPKLGEYNIKVTQNSLIEGAFG-EPSDAGFTKVFNDLFNSFDEVS 124 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 K+ + +V +N + ++ + + + + + EI+ + + + + +N Sbjct: 125 KDPTSGAAKVSVRENLISFGKYYSNISTALTGYQQNLNYEIKATVDEINILGTRIQNLNS 184 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-------MVVYTSDGTTLF 228 I DA+ F D+RDV + ++SE+I + V + T + Sbjct: 185 QIFQAEIYGDDANSFRDERDVCIDRLSELINVEAKEEEKVVEGKVLKTFSVKIAGQTFVD 244 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRDSVVPIF 286 + E + + G+ N G KI +++ + Sbjct: 245 HLNLNTLGVEVRGEKEQKIDDIVNTLSGLYEKLNNGGLTVDEITKINEQIKLEQKKLTDL 304 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + A I S + + P + + V Q Sbjct: 305 TPECTIDANGSITYNSPLEGKIDVLKVNPDFSTEIKTAGDGKFNVEDVDGLYNVIWQNGL 364 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + S K L ++++ G + + T+ + Sbjct: 365 SFDMGNANLSGELKGLIDLRDGCGTAESSEVTYNGIPYYISRLNGYVRQFAQTMNDEYS 423 Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 48/171 (28%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 E + G+ T + + + + Sbjct: 469 SAGELEEIGNKYTTKYKLFSYSTGSSTGMPATGEDLVGNNYSKMTATNITISKEIYENAS 528 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + Y D F + + +Y + L N ++ Sbjct: 529 NMRSTYGADEESGSDLFRALSNQKDNSKMFKEGDPKDYMASIFSELGINAQEALMYQSTQ 588 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + V I + V+L EE + LIK +Q+Y S K++ D + +T + Sbjct: 589 ESVTGIIKNQRLSVSQVDLTEEFTSLIKYQQAYQASAKIMNTIDGIYETTI 639 >gi|304397210|ref|ZP_07379089.1| flagellar hook-associated protein FlgK [Pantoea sp. aB] gi|304355359|gb|EFM19727.1| flagellar hook-associated protein FlgK [Pantoea sp. aB] Length = 549 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 58/398 (14%), Positives = 134/398 (33%), Gaps = 14/398 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI N Y R+ T+ + V + Sbjct: 1 MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTVLAQANSTLQGNSYYGNGVNI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L S+ + + + S + + +L+ Sbjct: 61 TGVQREYDAFIATQLRGSSAN--YSAVSTQHSQISNIDDLLSTSTTSLSTSLQGFFTNLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ ++++ NA+ +V F TSA+ + ++ + ++ I + S++ Sbjct: 119 NVVSNANDPSARQSMLSNAQGLVSQFQTSAQYLNNMQNSVNADVGSSIKQVNTITSQIAD 178 Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I K TA+ +D LD+RD L+ ++ ++G++ + + V ++G TL Sbjct: 179 LNKQIGKLSTANGAAPNDLLDKRDQLVNTLNNVVGVTVS-QQDGGYTVSMANGLTLVNGD 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S T + + G + LL R + + QNQL Sbjct: 238 KSHDLVAMPSSSDPTRTTIGYVDKQAGNVEIPEKLITTGSLGGLLAFRSQDLDLAQNQLG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++A SF++ +S G+ + L + + ++ Sbjct: 298 QLAAAFTTSFNDVHKQGFDSNGDQGVDFFNIGSPLVVSNSKNSTAASVTAEWTDTSALKA 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + W+ + + + Sbjct: 358 TNYNVSFDGTNWSATRASDSTAVTIAQVKDASGKTTLS 395 >gi|91776309|ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus flagellatus KT] gi|91710296|gb|ABE50224.1| protein of unknown function DUF1078-like protein [Methylobacillus flagellatus KT] Length = 410 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 123/483 (25%), Gaps = 85/483 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55 F + + N AS+ I N+ NA + + T N Sbjct: 2 AFQQGLSGLNAASKNIEVIGNNVANASTVGFKQSRTEFADVYANSLGGGNASKIGIGTKI 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + + F + + + + + Y Sbjct: 62 AAITQQFTQGNISNSQNPLDVAINGNGFFRMSDN-------GAITYSRNGQFQLDKDGYI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 +N + L + N + + ++R DA +++ L Sbjct: 115 QNAAGQRLTGYALANGQIQT-------GALTELRIDAADMPPRTTTSITGPL-------- 159 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 LD R +L + I + ++ + V+ S G + + Sbjct: 160 --------------NLDSRAEILDPANFDIDDPSSYNHSTPIEVFDSLGNSHSVQLYYLK 205 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T+ + +G + N + Sbjct: 206 SGITTAPNATTTWTVMASANGSQLMPNPIGTMVF-------------------------- 239 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + L ++ + + Q+ + + G Sbjct: 240 -----------DGSGIDPAITLAPLSIPLSSGGLTPMSVTLNLTGSTQFANTFNESDLGQ 288 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + +A L N W E + Sbjct: 289 DGYGAGRLSSFSIGADGSILGRYSNGRSSVLGQVALANFRNLNGLQPLGDNQ--WAETSE 346 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + + V+L EL +I ++ Y + + I D+++QTL Sbjct: 347 SGPPIVGVANSGGLGVLQSYRLEDSNVDLTAELVNMITAQRVYQANAQTIKTEDQIMQTL 406 Query: 476 LEG 478 + Sbjct: 407 VNL 409 >gi|302389667|ref|YP_003825488.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] gi|302200295|gb|ADL07865.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 113/478 (23%), Gaps = 74/478 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + I NI N + Y + + Sbjct: 1 MMRSMFSGVTGLRNHQIKMDVIGNNIANVNTVGYKKSRVTFQDT---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + SSA G + N + ++++ S + Sbjct: 45 LSQTMRGASSAQG-----------------NRGGTNPMQIGLGMTIAAIDTIHTPTSLEA 87 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 N A E +D + E + + Sbjct: 88 ------------TGNMTDLAIEGDGFFILSDGQGYYYTRAGNFGFDEQGNLVNTANGFKV 135 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +D+ I + + + + + I F+ +S Sbjct: 136 MGWQDSSSKTPQDIKPINIQKGMLMPAKPTDIVVFAKNLN-----KADQVVTIPFKVYDS 190 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 F + + + + L ++ Sbjct: 191 LGRAHNLTITFTNNGDNTWDYDISFD-------------------PTLISVSSGSDTGTL 231 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 DP S I + + QY + + Sbjct: 232 AFDPNGNLSGGST---INSVTLTIVGANPITFTPDFSNVTQYAKETTVDLSYQNGYPAGT 288 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + + + +A N L++ RN + N S + Sbjct: 289 LLGISVDSTGTITGVFDNGQTMELAQVALAVFNNPAGLMKAGRNMYTY--SNNSGEPQIG 346 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + IS V+L EE + +I ++ + ++++I +D+MLQ L+ + Sbjct: 347 LAGTGGRGTISPGSLEMSNVDLAEEFTQMIITQRGFQANSRVITASDEMLQELVNIKR 404 >gi|206603146|gb|EDZ39626.1| Probable flagellar hook protein FlgE [Leptospirillum sp. Group II '5-way CG'] Length = 457 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 58/493 (11%), Positives = 128/493 (25%), Gaps = 57/493 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M +L+ A + N + I NI N + + + + Sbjct: 1 MGVLSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNT 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + + A ++A+ F + Sbjct: 61 SQPGSGVYVDAIQQ---EFTQGSVQASTNALDLAIQGNGFLTV------RSKDGQKFYTR 111 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +L + S L Q + ++Q I +D Sbjct: 112 NGELALDKTGRIVDTSNRAL------------QGYMNKNGKIQPILSDIRVPQTTVPPKA 159 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + ++ + K + + D L + T D Sbjct: 160 TQNVFSRINLDAGMTEKLKEGREFEKSSNIFDSLGIQHLLTYKFIPTSVAGQWAFQATMD 219 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G +L I++ + T + + + + S G V Sbjct: 220 GASL-TKGGGSISYPPLGRKTPKTLKGIVGLIQFDGNGIVKSVNYGGSPL-KRDANGVVH 277 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++Q L + A + + + G+++ + Q Sbjct: 278 ALYQTTLADKAATPVSFDVVIPTKG---------------QTIRPNRINGVTQQVLQLTQ 322 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + S + + K N ++ ++ + + K +A N L Sbjct: 323 FNAPSSTIEETQDGHKSGDLNNLAISRDGKIVGSFSNGVQKVLGVVSIASFNNPGGLASV 382 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++E S + Q + + +L ++ +I E+ Y S Sbjct: 383 GGN--AYIESIASGVPNFGRPGQGGRGALLSNSLELSTTDLGRQMVDMITAERGYQASAS 440 Query: 464 LIMFTDKMLQTLL 476 +I + +L TLL Sbjct: 441 IIATDNTILNTLL 453 >gi|319790416|ref|YP_004152049.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114918|gb|ADU97408.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 522 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 59/540 (10%), Positives = 124/540 (22%), Gaps = 80/540 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L F A + + I NI N + + + Sbjct: 1 MLQSFYTAFTGLTADKRWLSIISDNIANVNTVGFKAERAVFEDLLARSLTTFKNGAPVNT 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + K+ ++ + + F +++ + Sbjct: 61 EIGGGVFVS---ATVKDFSQGTFMNTNNPLDLALDGEGFFMVRDN------QGLTYYTRN 111 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + R N+ + ++D+ + + + E SNL Sbjct: 112 GEFRLDANGDLINMLGMKVQGWMLDDNGNMAGAISNITVPMSMDPKVTKNISFEEPSNLD 171 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 +T D T + ++ D I T VYT Sbjct: 172 SRADVITAQFDPANSTTYNYVNSQTVYDSLGNPHTLTYYFQKIDTGT-----WRVYTLID 226 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR----- 279 TL + N+ + + S N + S + G A Sbjct: 227 GTLTPVTDGNGNYYEYVTLKFDSNGNVVSAGSDTQVSLAQNEQDTGTNGAFTLANPPVIG 286 Query: 280 ---------------------------------------DSVVPIFQNQLDEMARVLIGS 300 + Q + D I Sbjct: 287 SVHIKAIDGVTVNIHDEGDGDGDGIGNLVDENGNVVGTINYATGEIQLEGDYANSSSITV 346 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +P A + G + ++ + K Sbjct: 347 DYLYNPTAATATLDYKDITITGYDPNTGAQTPFTFAVNYEKLRQLASDFIFYAQQDGNSK 406 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + Y + K+ +A L+ WL + Sbjct: 407 GDLMAVAVSEDGVIKATYSNGKVKDIARLAIATFKDKEMLVRKG----SWLYVPNVQTFT 462 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V + + V++ E LI ++SY + ++I D++LQ + + Sbjct: 463 PVIMPGGVISKVRSGMLEMSNVDIANEFINLITAQRSYQANARVITTDDQILQETMNIKR 522 >gi|221639489|ref|YP_002525751.1| Flagellar hook-associated protein 1 [Rhodobacter sphaeroides KD131] gi|221160270|gb|ACM01250.1| Flagellar hook-associated protein 1 [Rhodobacter sphaeroides KD131] Length = 1363 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L A L + E + S ++ D+L Sbjct: 62 VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + L + V+ + + +F T A + +R + + + L +L Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + S + LD+RD LL ++S +G+ V Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ V + ++ Q + G ++ +V +LD Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347 +AR L+ + + G + + G + + + Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVTADTGNRGTGGASVVAFDTATAPG 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L + ++ + G V+ + Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412 Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435 + +L + + + + S Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] gi|254040202|gb|ACT56998.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 58/481 (12%), Positives = 131/481 (27%), Gaps = 61/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M +L A + + S + +++ NI N D Y R + T + S Sbjct: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLS 119 + K + + ++ + N + + E + +N++ Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 +L + NA + + E ++ + + L + + K Sbjct: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + RD S T+ + V YT G +E F + Sbjct: 181 PKHNG---------RDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSI----FRQ 227 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S + N ++ V VS + + + D+ Sbjct: 228 DQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNT----------------- 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + Q I+ I Q + + Sbjct: 271 ----------------------------SGIDQQITIDISKTTQLAGGFIPQKSEINGHA 302 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 +++ + Y D +A + + L + + +L S Sbjct: 303 PGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLF--DGNTYLPTRDSGDI 360 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + I T V++ EL+ LI+ +++Y +++K+ + L+ Sbjct: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 Query: 480 K 480 + Sbjct: 421 R 421 >gi|114562342|ref|YP_749855.1| flagellar hook protein FlgE [Shewanella frigidimarina NCIMB 400] gi|114333635|gb|ABI71017.1| flagellar basal body FlaE domain protein [Shewanella frigidimarina NCIMB 400] Length = 459 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/483 (9%), Positives = 108/483 (22%), Gaps = 36/483 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI N + + N T Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNSKTAVGGGATT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+++ F + + D + +Y Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQS----YTRAGAFKVDSSNYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + L +D T+ + ++ + T ++ Sbjct: 118 VDSAGNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGSPVQTGNVGLQMNLNVSETALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + D S + I + ++ M Y + Sbjct: 178 -------------ANFNPADSDTFNNSTSVTIYDSLGESHIMTTY------FVKPTNGSY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + +P+ + + + + + + Sbjct: 219 TGESNWVAFYAVDGDPVDVASGPGTYSTDTDGDSIA-DGTGTVSAANPGGAAGTWSGAVL 277 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G Q ++ QY S Sbjct: 278 KFNSVGAYTGSDPAIITTEALGTGGAGALGPGADGTQTLTIKFNSPTQYSSPFEVTELTQ 337 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y + + L + W Sbjct: 338 DGITVGRLTNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLD 395 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 396 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLNQTI 455 Query: 476 LEG 478 L+ Sbjct: 456 LQI 458 >gi|326202856|ref|ZP_08192723.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] gi|325986933|gb|EGD47762.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] Length = 707 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 56/404 (13%), Positives = 118/404 (29%), Gaps = 23/404 (5%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PE 48 + + A++ + + N+ N + R+ + + Sbjct: 5 FSSYEIARSGLKVSERGLFVTGHNLSNIQTPGFTRQQAIIETNPYITEYGKNGKLFQYGL 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + R D V ++ G E + +D + ++K Sbjct: 65 GADIQETRQIRHTFLDIVYRQENTIQGYWDTRSKAFHDVEAIL-NDPMGDGLQGVMNKFW 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DS + SK V +E+V +N ++ K + D + EI++ I+ + S Sbjct: 124 DSWQELSKEPESLTARAMVRQRGQELVYYYNHIGNQLDKQQNDLNSEIQVRINEVNSITS 183 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ +N I + + A+D+ DQR++LL ++S + + M V + Sbjct: 184 QIAKLNTQIASQEINGDKANDYRDQRNLLLDRLSILCDAEINEMQDGQMDVTLGGYYLVT 243 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +++ Y + + F + ++ V G +K L++ R V I + Sbjct: 244 RGQSKNL-------YVHANAEDGEFFYPKLEGTDIKINVKSGILKGLMEARGEVPGIKGS 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + D AGN ++ I L I + Sbjct: 297 TENGTPNYRADITFAIDVSAGNDFTTLKNSLSKYIDQLKKSGLDYNVRFITMGATSDVYN 356 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 S L + A Sbjct: 357 KTYDKNNIDSMLTDLTASALLEEGSATDGSFKDLVDKLTALNNA 400 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 46/421 (10%), Positives = 121/421 (28%), Gaps = 35/421 (8%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 G + D N T + L ++ K+ + + + +V Sbjct: 295 GSTENGTPNYRADITFAIDVSAGNDFTTLKNSLSKYIDQLKKSGLDYNVRFITMGATSDV 354 Query: 135 VQNFNT-----------SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 +A + + + D + + L + + + T Sbjct: 355 YNKTYDKNNIDSMLTDLTASALLEEGSATDGSFKDLVDKLTALNNAPAGFREDAEKYTYV 414 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + D + ++++ N + V T+ N E S Sbjct: 415 FTNKSINGDSPAADAFIGDAVNYVNSLKAMNMKVNVITNPAYYTNGKPDASSNPEAGWSI 474 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIK--------ALLQIRDSVVPIFQNQLDEMAR 295 + + ++ + + ++V + +L+ M Sbjct: 475 IASGTGGSLANINGSLAGYESMFKGWNDNLVQTVKDALGNIPPSLNIVSDIKTKLNAMLN 534 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + + G+ + I + + + N Sbjct: 535 RMVNEINALQMSGTTLDGKTGVAFFEVIDSNYPFEMGNLKLSDALLSDSGLN-------- 586 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + G + + + + + + NV++ EY RN I L Sbjct: 587 ----NITASKTGAKGDNTVAKQISNLRDVDILVNS----TGNVSIDEYYRNLILELGNGG 638 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + V N + GV++ EE+S ++K + +Y+ S++++ D M++T+ Sbjct: 639 MEADRIATSQATVVNAVDAQRDAISGVSMDEEMSNMMKYKFAYDASSRVLNVMDSMMETI 698 Query: 476 L 476 + Sbjct: 699 I 699 >gi|327543408|gb|EGF29832.1| flagellar hook-associated protein FlgK [Rhodopirellula baltica WH47] Length = 562 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 61/471 (12%), Positives = 135/471 (28%), Gaps = 34/471 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L +++ + A + NI NA+ + Y+R+ T + V Sbjct: 1 MGLFGTIQQSKGALDAAQIGLQVVGNNIANANTEGYIRQRLEQTPAVAYRQGNLIQGHGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + +A L S E + D S ++ Sbjct: 61 RATGVVQVIDQQLAERMFNAKTAAAGADSLSSAYGQLETL-ITDLDGGGLNEQFSLFNNA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L S ++ + VI E + + +++ + E++ + + R + Sbjct: 120 LHDLSTQPNDAATREFVIIQGEALATSMKQIRTRAGELQDGWNAEVDEAATQINRLTERI 179 Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I DA DQR L++++ + I+ + + ++ V+ + Sbjct: 180 AQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASGNVSVFVGGDYLI 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + R++ ++Y + + I V ++ GK+ A ++ R V + Sbjct: 240 ADGNRREV----YSAYDEDAGGLEVRI----VDTDAPLKAKGGKLGAAIEARGGVFGDYV 291 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------KLCQGISETI 338 LD+MA LI + L ++ + I Sbjct: 292 ENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSFDFNI 351 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + + + +A + + + Sbjct: 352 VDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSATSKF 411 Query: 399 TLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 T E + N S + VV + I + G+N Sbjct: 412 TFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNGGINADT 462 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 41/411 (9%), Positives = 109/411 (26%), Gaps = 17/411 (4%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 A + + + + T + LE + ++ + + Sbjct: 168 AATQINRLTERIAQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASG 227 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIEL-EISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + V ++ + +++ + D++ E+ + A Sbjct: 228 NVSVFVGGDYLIADGNRREVYSAYDEDAGGLEVRIVDTDAPLKAKGGKLGAAIEARGGVF 287 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D+++ D + + + T VP + + Sbjct: 288 GDYVENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSF 347 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + N + G ++S+ + + G I + + D Sbjct: 348 DFNIVDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSA 407 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 L+ + I VN + + L Sbjct: 408 TSKFTFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNG----------G 457 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + D ++ N ++ +I L + S Sbjct: 458 INADTNTLYNLLDIVDEPLDEL------GNRSIRGMHEQAISTLGREISVQKSATDGLND 511 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + + GVN+ EE +I ++++ S+++I +ML LL Sbjct: 512 LYASLQSQHLAITGVNIDEESIKMISYQRAFQASSRVISTAAEMLDILLAI 562 >gi|255654320|ref|ZP_05399729.1| putative flagellar hook-associated protein [Clostridium difficile QCD-23m63] Length = 315 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 137/373 (36%), Gaps = 61/373 (16%) Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ES SK+++ D V++NA + + S +++ K++ D D I+ EI + Sbjct: 3 FFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQINEM 62 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L L +N +I + S +D LD+RD +L +S + N Sbjct: 63 LKSLEDLNKSIDIISGSGSMPNDLLDERDRILDNLSFKLDFENSDVKNMLAD-------- 114 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + ++ + + G ++ L ++ + + Sbjct: 115 -----------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKIDTY 150 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 ++ L +++ L ++ + ++D + I VNP +S Sbjct: 151 KSDLKDVSDGLAKQINDVYNTSAGIT----------VRDFFVTSNVDGEDIIKVNPAIKS 200 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 NP+ L+ + K + K+ D T+ ++ + Sbjct: 201 NPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHYKA 241 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + + + N+I S + GV+L EE++ LIK+++SY S K++ Sbjct: 242 FAELVGLDSKKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKVMS 301 Query: 467 FTDKMLQTLLEGV 479 ++L ++ G+ Sbjct: 302 TAVQLLDVVINGI 314 >gi|163750570|ref|ZP_02157808.1| flagellar hook protein [Shewanella benthica KT99] gi|161329725|gb|EDQ00714.1| flagellar hook protein [Shewanella benthica KT99] Length = 455 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 61/483 (12%), Positives = 132/483 (27%), Gaps = 40/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI N ++ + N VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANGKTAVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F + A DH + + Y Sbjct: 62 SQIAQQFHQGSLQFTNNALDLAINGGGFFVTSSELEAKDHS----FTRAGAFKVNSADYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D T+ + V+ + I + + ++ Sbjct: 118 VDSQGNYLQTFPVDKDGNSTSVSLTTTKPVRIPDTAGSPQKTENIGIQMNLNAADSSLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ A+ D ++ + I + VR N + S+ + + + Sbjct: 178 AL--FDANDRDTYNNSTAVTMYDSLGEPHILTTYFVRPPNAAYIGESNWVAFYAVDGQRV 235 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + +Y DGV + + G A+++ D+ I N + Sbjct: 236 DLAEAGTYDQDDNG-----DGVANVRSTAAVTAGGWKGAVIKFNDTGAHIATNPDPILTV 290 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + ++ Q ++ QY S Sbjct: 291 PLGVGVGSANVLGPGTDG-----------------SQTLTIAFNNPTQYASTFEVTELNQ 333 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +A L + W Sbjct: 334 DGTTVGRLTNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGN--TSWKASQD 391 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L +L LI ++++ S++ + + + QT+ Sbjct: 392 SGQALAGEANSGTFGSIRSSALEQSNVDLTTQLVNLISAQRNFQASSRTLEVNNTLQQTI 451 Query: 476 LEG 478 L+ Sbjct: 452 LQI 454 >gi|218886899|ref|YP_002436220.1| hypothetical protein DvMF_1808 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757853|gb|ACL08752.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 501 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/505 (8%), Positives = 114/505 (22%), Gaps = 32/505 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 +L +Q ++ N+ N + + ++ + + Sbjct: 1 MLRALYSGATGMKTLAQGMQAVSNNLANVNTVGFKQQQALFEDLMSQYAGTGNSASTSIS 60 Query: 61 ------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + D + + + + R Sbjct: 61 QVGLGSRLTDIRTVYGQGSYESGTDITDLSINGKGFFQVSLGGKTHYTRAGNFRFDKGGN 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + +L I N E + R + I+ L S + Sbjct: 121 LVDPNGFVLNGRAITNGVEGATGPISLPPGADG-RNVMPAKATTSITALNNLGSGDRSSD 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A + + + I + N +D+ +Y + Sbjct: 180 AANPYFSLLSKWNGTAQSPLGDSAYTYKQSIKVYDATGNAHDVTIYFDGAG--QSGGNKH 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 F ++ S + G++ + + A Sbjct: 238 FEFVVSMDPAHDGSGMAGTSAAGLLMSGTLTFNSSGQLVNMSAYTPTGTDATNLSNWAPA 297 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC--------------- 339 + + + + G+ G Sbjct: 298 SFGADGLPQFTATFASGGGTQVVGLDLGLTSSTGAWTAGAGSPAAVGSNASNLMGMGGAT 357 Query: 340 ----VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 Y + S +R + +++ + Y + N + + Sbjct: 358 LAAVSTTAYGGSSSEIRSKQDGYAQGFLAGIDISADGIITGRYSNGQNDDLYHITLYRFT 417 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + L + S + + + ++ V+++ E +I + Sbjct: 418 SEDGLRR--EGMNHFSATLESGAAQEGLPDTQNYGTVAAKSLEQSNVSMEREFVNMIIYQ 475 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++K IM D M+Q LE + Sbjct: 476 RGFQTNSKSIMTADSMIQKALELKR 500 >gi|148258439|ref|YP_001243024.1| putative flagellar hook-associated protein [Bradyrhizobium sp. BTAi1] gi|146410612|gb|ABQ39118.1| putative flagellar hook-associated protein [Bradyrhizobium sp. BTAi1] Length = 599 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 5/423 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSEN 59 L FN A ++ +N+ N+ Y RR T + V V Sbjct: 2 LTNAFNTATAGLQTLQVAIGTVSQNVANSGVAGYTRRVVSTESAGPGNSGVAVARIDRTF 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 M K + S+ A + +S +++ ++ L SL + + N + Sbjct: 62 DEMALKQMRLESAHAAYASAKADILAQIDKLSGKPADSSALDARLNGLAKSLLALASNGA 121 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 TV+D A + A +Q +R A+K + E+S L+ + +N Sbjct: 122 SASSRSTVVDAASVLADKIRGMADALQAMRDGANKRLAAEVSAADGLLTSIADLNIKATT 181 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T LD+RD + +++ + + +I + + + + T+ G TL E Sbjct: 182 VTDD-ATRVGILDRRDQQITELARYMEVKSIRQRDGGVTLMTASGLTLVERGAATKLSFI 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S + + G V SAV G I A L+IRD+++P Q +LD++A L Sbjct: 241 DRSPATGGGAIVATLPGGVGLELDASAVSSGSIAANLEIRDAILPRTQRRLDDLAFGLAQ 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 +F+ AG L + D + + S L Sbjct: 301 AFTNTTVTAGRRGAGFDLRLDDVAQMQPGNTITIAVGSGDTQRTIVLVASNLASKSLDVA 360 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + V+ A + + A VT ++G + Sbjct: 361 QPPGRVQTFAIPSAPATSQAYAAALS-TAISAAAPGLTVTSGGSNSITVGGAGIQSVTAS 419 Query: 420 DLH 422 Sbjct: 420 VTQ 422 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/417 (11%), Positives = 113/417 (27%), Gaps = 15/417 (3%) Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + ++S ++ + + + S S + Sbjct: 194 RRDQQITELARYMEVKSIRQRDGGVTLMTASGLTLVERGAATKLSFIDRSPATGGGAIVA 253 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T+ + S+ + D + L L + Sbjct: 254 TLPGGVGLELDASAVSSGSIAANLEIRDAILPRTQRRLDDLAFGLAQAFTNTTVTAGRRG 313 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D DV + I I+ + +V V ++ + ++ Sbjct: 314 AGFDLRLD-DVAQMQPGNTITIAVGSGDTQRTIV----------LVASNLASKSLDVAQP 362 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 I +S +A I A + A + + S Sbjct: 363 PGRVQTFAIPSAPATSQAYAAALSTAISAAAPGLTVTSGGSNSITVGGAGIQSVTASVTQ 422 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P + +A + N L G + + + + + + Sbjct: 423 PKTAGDLSGGYPKLAVFVDGAANALVNGAMDDGPQRAGLAARLAVNTALKADTSALVAVG 482 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGWLEKNRSDSHDL 421 + + Y ++ F G + T++ +A++ + + S + Sbjct: 483 SSPSALSRPQALYQALTSEKQGFSSPNGSSNRSPAMTTVISFAQDVVAAAGSEAAASATV 542 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V + +S VN+ EE+S LI ++ +Y + +++ +M+ LL Sbjct: 543 ADQQNVAKANADAWFSKGASVNIDEEMSRLIALQTAYAANARVLTAAREMIDLLLRA 599 >gi|126175140|ref|YP_001051289.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] gi|125998345|gb|ABN62420.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] Length = 641 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 48/439 (10%), Positives = 119/439 (27%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L + S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFAGMNSV 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + NA++V + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + I V+ + + G++ A+ RD + ++LD++A Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I D + N + Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFK-----DINDPMMSLGRVAGFSGNTGNATL---- 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + + + + Sbjct: 348 GVTVDDTSLLTGGAYELSFTAPATYELRDTETGTITPLTLTGSTLSGGSGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I Sbjct: 408 ASGDRFAIRPTAGASNGIE 426 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 99/364 (27%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + G + A V NFN + + I +I++ L + + Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T L + + T G+TL I+ Sbjct: 342 TGNATLGVTVDDTSLLTGGAYELSFTAPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + + D + T P + Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDSK 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + N TL + N+ + Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLEIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 SSVR 641 >gi|229591865|ref|YP_002873984.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens SBW25] gi|229363731|emb|CAY51133.1| putative flagellar hook-associated protein [Pseudomonas fluorescens SBW25] Length = 682 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 53/335 (15%), Positives = 119/335 (35%), Gaps = 15/335 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + N A + + NI NA+ Y R+ T+ + + T+ Sbjct: 2 SLLNIGMSGLNAAQGSLSVLSNNIANANTAGYSRQQTIQSANASNQYGGVFIGSGTTLAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R D +S + + + + +S ++++ Sbjct: 62 VRRVYNEYLDTAYQNSTSLNS--DAKAYLDQVSAVDKTLSDKTTGMSSVLSSFFAAVQTA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S+ + ++ +A+ + FN+ + ++ + + + ++ + + S + +N Sbjct: 120 SANPSDTSARQILLTSAQTLSNRFNSISSQLSQQKETINSQLTSLTDQVNQLTSSIASLN 179 Query: 175 DAIKFKTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I S + LD R ++ ++E+IG++ N V T G +L R Sbjct: 180 KQITQVQGSSNTTPANLLDARAEAVRSLNELIGVNASE-KNGVFSVSTGTGQSLV-LGDR 237 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + S + TS+ + + G+ + G I LL+ R V+ N L + Sbjct: 238 SNTLSAVPSKSDTSQYTIQMNASGGTAMDLGNVISGGSIGGLLRYRSDVLMPAINDLGRI 297 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 A V + + + + G + I + Sbjct: 298 AIVTADTINSQLGQGIDLNGEFGSSMFKDINSAAS 332 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 39/443 (8%), Positives = 108/443 (24%), Gaps = 10/443 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + T+ + + + +L S + A+ + + Sbjct: 250 TSQYTIQMNASGGTAMDLGNVISGGSIGGLLRYRSDVLMPAINDLGRIAIVTADTINSQL 309 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + S+ + + L + V T K+ K Sbjct: 310 GQGIDLN-GEFGSSMFKDINSAASVALRSLSAQGNQGVGSLGVTIKDT-SKLTNFDYKVT 367 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + ++L + E + F ++ + ++ + + Sbjct: 368 FSDPADLNKVTVERSDGKAMGAFDISATPPSVIDGFTLELTNGPMQAGDSFKVSPTASGA 427 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + T + E + T P + + G A L Sbjct: 428 QDIGTVLNDPSKIAFAAPLKGEASKTNQGTGSFTPPTL-------TLPLDIQGGATTAQL 480 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ + + A S++ D + + ++ + Sbjct: 481 RVGIENSMPVKMVFGKPAADGTQSYTLNDAKGDPIGSGTIIPGQANKITVNVPMRDASGA 540 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + + + K + G Sbjct: 541 LVVPAKSFGFDTTVAGSPTDGDSTTFSFNATGVSDNRNAQQLLNLQTKATVGVATDGTGG 600 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 +L+ + + + + + + + ++ VNL EE +IK +Q Sbjct: 601 T-SLVGANSKLVSTVGAKAAAATTDTTATNALLTANKNARNSVSQVNLDEEAGDMIKFQQ 659 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 Y S+++I + TL+ + Sbjct: 660 YYTASSQIIKAAQETFSTLINSL 682 >gi|294339836|emb|CAZ88199.1| putative flagellar hook-associated protein FlgK [Thiomonas sp. 3As] Length = 667 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 55/398 (13%), Positives = 126/398 (31%), Gaps = 15/398 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 + + N A A NI N + Y R + + Sbjct: 3 GISGLLNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQ 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + + ++ L + + A S T + Sbjct: 63 IDAVTRSYNSYLQSQVWSTAATASGANTLNTQIQPIANLIAGTDSGLS-TSINKFFASGV 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + N ++ +++I ++ + Q TSA+++Q + ++++ ++ + ++ Sbjct: 122 AQVAANPADLPSRQSLISQSQSLAQTIQTSAQQLQSAASGVNQQLGQSVTAINSLTQQIA 181 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N I + + + LDQRD L+ ++S +G++ + + N + V+T +G L Sbjct: 182 QLNVQINTLSGAGSTPNSLLDQRDQLITQLSGQVGVTVLPQGGNQVNVFTGNGQVLVAGA 241 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++Y + +G V+S LLQ R V+ QN L Sbjct: 242 QSFDLKTTPSAYDPSQLEVAYASNGAVLSQCLQGGTL----GGLLQFRSQVLQPAQNALG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L + + + + G + + +N Sbjct: 298 RIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVISGSVVDANALTT 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 D W+V NL+ + + + + Sbjct: 358 ADYRLNYDGSNWSVTNLSSGQPVSGATVGTSGSATVLN 395 Score = 43.5 bits (100), Expect = 0.086, Method: Composition-based stats. Identities = 30/415 (7%), Positives = 96/415 (23%), Gaps = 5/415 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA---LKEMMSADDHY 96 V V +S + + + Sbjct: 226 QVNVFTGNGQVLVAGAQSFDLKTTPSAYDPSQLEVAYASNGAVLSQCLQGGTLGGLLQFR 285 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + L + + ++ ++ + + + I Sbjct: 286 SQVLQPAQNALGRIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVI 345 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + +N + + + + V + ++ + N + Sbjct: 346 SGSVVDANALTTADYRLNYDGSNWSVTNLSSGQPVSGATVGTSGSATVLNFDGVQVNVSG 405 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + + T +NF+ + + + ++ + L Sbjct: 406 AQA--GNSFEVQPTRYGALNFQSVLTNPTQIAAASPYVSSAGQMLSGSLVNTNLGNLTLS 463 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + S + A V + + + L + Sbjct: 464 AGQYSATSGAGALVISGASVPTPLQVTLTSGGTSGAVGFQVTQSGSATVLASGSLSLGGS 523 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 ++ Y +NP +++ + P + ++ + + Sbjct: 524 GQVLSIPYANNPPGGYWNVTLAGSTAVSGDAFTLSPASGGNGGNAQAMAALQTAKTLESG 583 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + +L + + + + + V S + + GVNL EE + L Sbjct: 584 STSLEGAYSQLVSQVATQGNQAQSALSAASAVAAQASAAQQSVSGVNLDEEATNL 638 >gi|238924161|ref|YP_002937677.1| flagellar hook protein [Eubacterium rectale ATCC 33656] gi|238875836|gb|ACR75543.1| flagellar hook protein [Eubacterium rectale ATCC 33656] Length = 477 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/484 (9%), Positives = 123/484 (25%), Gaps = 13/484 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + + + T N Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGA---SAGNG 57 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ IG + + + N ++ + + + + Sbjct: 58 AAGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117 Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + + +Q + DA + I + L ++ + Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGTV---IKDTVSSLQVMSSATKTSAPEA 174 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 +K LD+ D II I + T + + ++ Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234 Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 S + V + N I G + + + + V + ++ Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + +++ + ++ L+ G Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGDLQGDGK 354 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + VA L + N + Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGE 414 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 S IS V+L + + +I ++ + ++++I +D +L+ L+ Sbjct: 415 FDGIGVEISADG-GSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473 Query: 477 EGVK 480 + Sbjct: 474 NLKR 477 >gi|127512279|ref|YP_001093476.1| flagellar hook protein FlgE [Shewanella loihica PV-4] gi|126637574|gb|ABO23217.1| flagellar basal body FlaE domain protein [Shewanella loihica PV-4] Length = 453 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/483 (10%), Positives = 109/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + A + + NI N + + VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S+A+ F + + D + +SY Sbjct: 62 AQVAQQFQQGSLQFTSNALDMAINGGGFFVTSSEVGSQDLS----YTRAGAFKVDADSYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + + L +D T+ + V+ + I Sbjct: 118 VNSAGNYLQTFPVDKDGNSTSVSLTTTQPVKIPDTAGSPQKTDNIG-------------I 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D S + + + + + Y Sbjct: 165 QMNLNAGEGTLDPANFNPNDPDTYNNSTSVTMYDSLGEPHILTTY------FVRPPEAAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + G + + + + S ++ Sbjct: 219 TGTSNWVAFYAVDGKQVDLAGAAGTYGRDTTGDGVADSTGTAVNASGWKGSVLSFNDTGA 278 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + Q ++ QY S Sbjct: 279 YTGSDPAVITTETLGVGGA-------NVLGPGTDGSQTLTLNFNSPTQYASPFEVTELSQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +A + L + W E Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALARFSNEQGLTQVGN--TSWKESLD 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|269138582|ref|YP_003295282.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|267984242|gb|ACY84071.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|304558592|gb|ADM41256.1| Flagellar hook protein FlgE [Edwardsiella tarda FL6-60] Length = 410 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 113/476 (23%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS Q I NI N+ + V T S N++ Sbjct: 2 GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + Q F +++ + + + + N Sbjct: 62 KDGTTTTTNRGLDVAISGQGFFRMQD------PNGSVYYTRNGQFSKDAKGFLTNAQGMY 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q + A Sbjct: 116 LTGYPAAGTPPTIQQGAD-----------------------------PVPIQIPTGLMPA 146 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + + ++ + +L ++ F K S Sbjct: 147 KASTQGTMVLNLNSANKAVDKTVAFDPSKVDSYTYATSMTTYDSLGNVHNMNLYFVKGES 206 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + G G + Sbjct: 207 TTTAPITTTWKVYSIDSADPAGKPQDAGDL------------------------------ 236 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D ++ L + + + T + K Sbjct: 237 TFDSNGELAKGTAPLTLNMAASNGAPAQTFKLDFTGTRQQNTGKD-GVTSKTQDGYKAGE 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L+ N W E +S + Sbjct: 296 LTGYQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNV--WSESAKSGQPIVG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ V+L ++L +I +++Y + + I D++LQTL+ Sbjct: 354 TSGTSGLGSLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 409 >gi|121997319|ref|YP_001002106.1| flagellar basal body FlaE domain-containing protein [Halorhodospira halophila SL1] gi|121588724|gb|ABM61304.1| flagellar basal body FlaE domain protein [Halorhodospira halophila SL1] Length = 418 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 41/477 (8%), Positives = 116/477 (24%), Gaps = 65/477 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSENKN 61 FN + N+AS+ + N+ NA + P + + ++ Sbjct: 2 SFNISLTGINSASKDLETTSNNLANAGTTGFKESRAEFNDLFAMGPMGIPQLAVGQGSRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + S + + + Y N + Sbjct: 62 ANVGQMFSQGS-FDFTERSLDLGIEGRGFFRMEDDGEVSYTRAGQFEVDRDGYIVNNTGK 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L +E ++Q + ++ V+++ + F Sbjct: 121 RLTG---FQTDEDGSRIGDGRDQLQLPTDGIPARASENVEIAANLSADADVIDEGVAFDP 177 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + Q + NN+ VYT + D + Sbjct: 178 DDNETFTESTTTTLYDSQGSARDATFYFRKVGNNEWDVYTQVDGV--DYEQADTEGDYFG 235 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + ++ +++ +D + +++ + A + D + Sbjct: 236 PHRLSFDTSGSLVDAEGDDEGRIASLEDVPLLAEVDDLDLDID----------------- 278 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 Q+ + Sbjct: 279 ------------------------------------FGEMTQFARPFNVTNVSQDGYAAG 302 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + N+ G ++ Y + + + + L W + + Sbjct: 303 EFENINVEGDGTILARYSNGEAQAVGQVALTSFPSEEKLQSVGE--TSWQATRDAGDPLI 360 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Q F + V + ++L +I +++++ + +++ D++ Q +L Sbjct: 361 GVPGQGQFGRVENGALEQSNVEVSDQLVNMITAQRNFSANAQMVSTQDQVTQEILNI 417 >gi|153001466|ref|YP_001367147.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185] gi|151366084|gb|ABS09084.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185] Length = 641 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 110/352 (31%), Gaps = 17/352 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFSGLNSV 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + NA++V + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + I V+ + + G++ A+ RD + ++LD++A Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + +F++ + G I I D L + + Sbjct: 297 LGVADNFNKMQAQGIDLNGQLGANIFKDINDPMMSLGRAAGFSGNTGNATLG 348 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 98/364 (26%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + G + A V NFN + + I +I++ L + Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQLGANIFKDINDPMMSLGRAAGFSGN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T L + + T G+ L I+ Sbjct: 342 TGNATLGVTIDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSILSGGSGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + + D + T P + + Sbjct: 461 NRNAANFPVTGSELTIKLDTTVLPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + + TL + N+ + Sbjct: 521 AAA---ANDRFTFDLSFAEGDNSNAVAMAKLSESKVMNSGKSTLADVFENTKLDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 SSVR 641 >gi|294140185|ref|YP_003556163.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326654|dbj|BAJ01385.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 453 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 111/483 (22%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A + + NI N ++ + + N VT Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFSDVYANSIFSNSKTAVGGGVTT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++A+ F +S + + +Y Sbjct: 62 SQVAQQFHQGSMQFTNNALDMAINGGGFFVTSSDLSGKEQS----FTRAGAFKVDSSNYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D T+ + V + I Sbjct: 118 VDSQGNFLQTFPVDKDGNSTSVSLTTTKPVTIPDTAGSPQKTENIG-------------I 164 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A D D S + + + + M Y Sbjct: 165 QMNLNAADSTLDPALFDPNDRDTYNNSTAVTMYDSLGEPHIMTTY------FVRPPNAAY 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + + +DG S + + + +++ Sbjct: 219 TGESNWVAFYAVDGKQVDLDGAAGSYQTDTNADGAPDGTGTAVTAGGWKGAVIKFNDIGS 278 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + A + Q ++ QY S Sbjct: 279 YTTSDPATIKTQALGVGGAG-------VLGPGTDGTQTLTIDFNNPTQYASTFEVTELNQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +A L + W Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGN--TSWKASQD 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L EL LI ++++ +++ + + + QT+ Sbjct: 390 SGLALAGEANTGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|317011316|gb|ADU85063.1| flagellar hook-associated protein FlgK [Helicobacter pylori SouthAfrica7] Length = 606 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMMDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNKDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHNIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ ++ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNKDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|254524254|ref|ZP_05136309.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] gi|219721845|gb|EED40370.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] Length = 407 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ + N+ N + + ++ + Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 66 VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A G Q E + + + N Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGFVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + ++ Sbjct: 122 LQVFAPNADGTNFDSGRIVDLQLL------------------------------------ 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D ++ SE+ T+ N V T D T +S Sbjct: 146 ----------TTDSAPKQTSEVKVGFTLPANAKPPTVTTFDPTDSNTYNHSSGGITVYDS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ F+ G + G+ + Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAGTP-----------------------TPV 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D G ++ I + QY + Sbjct: 233 TFDNSGKLIAPTDGKVSLGTFTPNTGAGQLNMTLDITGSTQYGEKFALRNTQQDGYAAGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K + N L N W++ S + Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 M I V+L E+L +I ++++ + ++I D++ QT++ Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406 >gi|190574263|ref|YP_001972108.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia K279a] gi|190012185|emb|CAQ45808.1| putative flagellar hook protein [Stenotrophomonas maltophilia K279a] Length = 407 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ + N+ N + + ++ + Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 66 VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A G Q E + + Y N Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ Sbjct: 122 LQVFAPNADGTNFDAGRMVDLQLL------------------------------------ 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D ++ SE+ T+ N V T D T +S Sbjct: 146 ----------TTDSPPKQTSEVKVGFTLPANAKQPTVTTFDPTDSNSYNHSSGGITVYDS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ F+ G + G+ + Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAG-----------------------APTPV 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + G ++ + + QY + Sbjct: 233 TFDNSGKLTAPADGKVSLGTFTPTTGAGVLNMTLDVSGSTQYGEKFALRNTQQDGYAAGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K + N L N W++ S + Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 M I V+L E+L +I ++++ + ++I D++ QT++ Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406 >gi|312879808|ref|ZP_07739608.1| flagellar hook-associated protein FlgK [Aminomonas paucivorans DSM 12260] gi|310783099|gb|EFQ23497.1| flagellar hook-associated protein FlgK [Aminomonas paucivorans DSM 12260] Length = 872 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 52/472 (11%), Positives = 130/472 (27%), Gaps = 50/472 (10%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46 F + + + + NI NAD + Y R+ + + Sbjct: 5 FFGFEMGRRAMDYFRRGMETAGHNIANADVEGYSRQRVEASSTDPFTDPGLARPAIPGQI 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + + D S G +Q E+ ++ + I + Sbjct: 65 GTGVKIDAIKRLRDLFLDSQYREEISVQGYWEQVQQAVNQTEIY-VNEPAGKGFQYAIDQ 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ++L+ SK + + ++ + V + + R +KEI+L++ + Sbjct: 124 YWEALQEVSKRPDDSATRENLVQKTKSTVAFLHQLETNYDQYRTALNKEIKLKVDQANEY 183 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + ++ +N+ I + +D LD+RD+L +K+S+II + + Sbjct: 184 IDQIAGLNEVISEIKGVGGNPNDLLDRRDLLTEKLSKIIDCTV--GSPCIDEADGEFKID 241 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + + + F V ++ + P+ + L Q V Sbjct: 242 LHGKLLVQGTKTRHLETVPMVGNQGFFDVQVEDNTFDHVSNPEVAVAVLEQRMTESVVSL 301 Query: 287 QNQLDEMAR--------------------------VLIGSFSEKDPIAGNSENVPGLFIA 320 Q + + + P + Sbjct: 302 QVKRLANEANWEVGKGNGRLAVQDANAALGLRGSFGIQVGTNGVQKTTTAFPGNPPAVLV 361 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + + ++ V + +R ++ + + + A N Sbjct: 362 GTVLEPPIPATTEVTHRFRVAAGGFESLVQVRWNSVTNQWDITDNQGHAAASATANLNLS 421 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + F G + ++ L + + + + + + Sbjct: 422 DLDS--FFGANYGAALDCSVNGAGNEWT--LGSDNRELLSITDVQGNLASQL 469 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 66/212 (31%), Gaps = 7/212 (3%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G +K +L+ RD + + DE+ L+ + + + + + Sbjct: 663 QGGALKGMLESRDDFILAQMDSFDEIVFGLVSETNALHFAGHGTGDYLMTSGVEFFDTVA 722 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + S + + S + K ++ + Sbjct: 723 VRYGAAKSFELNEEIENHSGL-------IAAASDDGKGKAQGTGGTSSGDGSNALRMAQL 775 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + + + I L + + + I +GVN+ EE Sbjct: 776 KQTKVLNDRTADFNAFYESFIAELGATGQRAATMGKNQTALVGQIQTQRQAVMGVNMDEE 835 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +IK +Q++N + + I D+ML ++ G+ Sbjct: 836 MMDIIKFQQAFNGAARYITTIDEMLDKIINGM 867 >gi|126462478|ref|YP_001043592.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17029] gi|126104142|gb|ABN76820.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17029] Length = 1363 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 55/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L A L + E + S ++ D+L Sbjct: 62 VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + L + V+ + + +F T A + +R + + + L +L Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + S + LD+RD LL ++S +G+ V Sbjct: 180 ELNGRMTGAQQSAMNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ + + ++ Q + G ++ +V +LD Sbjct: 234 PLLLEGTVASTLGLAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAGAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347 +AR L+ + + G + + G + + + Sbjct: 293 ALARQLVAEMNTVHAQGIDQAGARGGDLFALEGWQVTADTGNRGTGGASVVAFDTATAPG 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L + ++ + G V+ + Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412 Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435 + +L + + + + S Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444 >gi|269138588|ref|YP_003295288.1| flagellar hook-associated protein [Edwardsiella tarda EIB202] gi|267984248|gb|ACY84077.1| flagellar hook-associated protein [Edwardsiella tarda EIB202] Length = 546 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 56/552 (10%), Positives = 126/552 (22%), Gaps = 83/552 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + A A NI N Y R+ + V V Sbjct: 1 MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQTVSFAENNGTSTPAGFIGNGVVV 60 Query: 53 VTQRSENKNMFDKVLHA----------------------HSSAIGQQRLLQSFEALKEMM 90 E L S +Q+F + + Sbjct: 61 SGINREYNQFIVNQLRQGQSDLATTSTYHKQISQIDNLLADSTNSLAANMQNFFKNLQNL 120 Query: 91 SADDHYNNSPTHYISK----------------LRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + IS +S + + + + + + A Sbjct: 121 VSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESSTNVTVSNNAEQINDYAKQIANLN 180 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + D + S L + ++ + D + + + Sbjct: 181 NRISELTGASGGTAPNDLLDLRDKMASELNQIVNVDISMQDGAMNVSFAGGLSLVQGGDA 240 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD---------------------------GTTL 227 + S T + + + G Sbjct: 241 YSVKAVPSSSDPSRTTLAYDRGNGLSEVPEARISGGSMAGIFRFRNEALDNTRNQLGQIA 300 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV-VPIF 286 + + +F G S + K + A V + Sbjct: 301 LSMANAFNQVQSEGVDLNGDKGGDLFGFGQPESLANTNNTSKTSLSASYDDISKVQATDY 360 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + + + +++ + + Sbjct: 361 RIDFKDGKWNVTRLADGTHQTITPEADGGDTVLKFDGLKVKINDTPAENDSFKLRTTSTA 420 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 F +K + K G D N+ + TL Sbjct: 421 ISGFDVKISDPAKIAAGSAKGEVGDNTNAQKMLDLQNQKI-------VGGKATLSGAYAG 473 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +G + + + V +++ + GVNL EE L++ +Q Y + ++I Sbjct: 474 LVGTIGNQTNGAKVDSTAQGNVVKQLTKEQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQ 533 Query: 467 FTDKMLQTLLEG 478 M LL+ Sbjct: 534 TATSMFNALLDI 545 >gi|163758031|ref|ZP_02165119.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] gi|162284320|gb|EDQ34603.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] Length = 419 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 112/481 (23%), Gaps = 63/481 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + ++ N+ NA+ Y R + + + S Sbjct: 1 MSLYGMMRTGASGMNAQANRLGTVADNMANANTTGYKRASAEFSSLILPGSAGSYNSGAV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + A+ N P E + N + Sbjct: 61 TTDVRYSISQAGALEFTSSKTDMALDGSGFFIVTDDNGLPFLTRAGSFVPDGEGFLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L ++ + A + + L E + A Sbjct: 121 GFRLMGYNYESGTPTPVVNGFDGLVPVNVSAGSLTAAPSTTGYFQANLDEGATIVPAADL 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + A + + + ++ + Sbjct: 181 PSTNSATA------------------------------DYTSKSSLIAIDNLGGEVLLDF 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T T+ D S+ + D + Sbjct: 211 YYTKTATNTWEVTVYDRAGASAGTSFPYASAPLATTTLQFDPLNGQLAG----------- 259 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + A DL N + T+ S PS + D Sbjct: 260 -------ASATDISFTVPGGAGLTIDLSNMSQLNYAFTVDDANVNGSKPSTVTDIEISED 312 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ L P+AG + L S Sbjct: 313 GTIFASYENGTLEPLYRVALADVTSPDKLRPLAGNVYSQGLD--------------SGVI 358 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F + + V++ EEL+ +I ++SY ++K+ +++ L+ Sbjct: 359 TTGFAGSGSFGKVVSGALESSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMEVLVNLK 418 Query: 480 K 480 + Sbjct: 419 R 419 >gi|256750749|ref|ZP_05491634.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750332|gb|EEU63351.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 417 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 114/478 (23%), Gaps = 61/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + SK + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + D + + L + ++ A + Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPAATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + I+ N + + + I F K ++ Sbjct: 173 IGGN--------------------INASTEINGAISYNILVYDSQGGSHIATITFTKNDA 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + SS+ + G ++P Sbjct: 213 TTWNWSVS---------SSDPAISSVDGSGTLTFGADGRILPDA---------------- 247 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + + + +S + + S ++ Sbjct: 248 ------NGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + ++I +D++LQ L+ + Sbjct: 360 AAGTNTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNMKR 417 >gi|261856354|ref|YP_003263637.1| flagellar hook-associated protein FlgK [Halothiobacillus neapolitanus c2] gi|261836823|gb|ACX96590.1| flagellar hook-associated protein FlgK [Halothiobacillus neapolitanus c2] Length = 549 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 53/443 (11%), Positives = 129/443 (29%), Gaps = 24/443 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + + Q A+ NI NA+ Y R V V Sbjct: 1 MPDLMSNSVTGLLAMQQALATTGNNIANANTPGYSRERVNLASMQAQYQNGSYIGSGVQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L+A ++ F + D ++ + Sbjct: 61 ASVTRVYDQFITSQLNAATTTNSSLTFQNDFTTQVTQLLGDTSS--GIAQQTQAFFNATQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N ++ T + +A+ + +FN ++Q + ++ + + ++ Sbjct: 119 AIAANPTDATARSTFLGSAQALTDSFNRIDSQLQSLDNQIGQQATDIGRQINTYAKQVAS 178 Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I A+ + +D LDQRD L+ +IS +I + N ++ + + G +L Sbjct: 179 LNGEISKAQATNPNALPNDLLDQRDQLITQISSLIDVKANPDNQGNINLTLASGESLVLN 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + +++ S V G + +L+ + ++ +NQL Sbjct: 239 STATNLSVGNLPSGLNITLG---------NTDITSRVKGGTLGGMLEAQSQLITPLRNQL 289 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-SNPS 349 A VL ++ + G + + + + + S+P+ Sbjct: 290 GRAALVLADQVNQNQTTGVDLNGNTGTNLFTDVSAFAPQTTAQPTNKGTGSATGAYSDPT 349 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L +++ N + + + + N + Sbjct: 350 LLTGQTYLARYDGTNWQVSTVPGNGAAPLTVASGGTLSLPGLDVTFAGAPQSGDVLNILP 409 Query: 410 WLEKNRSDSHDLHMKSQVVFNHI 432 + S + Sbjct: 410 TVGAAGKIGVVQQSPSGIAAAEA 432 >gi|11136619|gb|AAG31286.1|AF317649_1 flagellar hook-associated protein 1 [Rhodobacter sphaeroides] Length = 1363 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 126/452 (27%), Gaps = 30/452 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L A L + E + S ++ D+L Sbjct: 62 VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + L + V+ + + +F T A + +R + + L +L Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVTGLAGQTAVEASQTLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + S + LD+RD LL ++S +G+ V Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ V + ++ Q + G ++ +V +LD Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347 +AR L+ + + G + + G + + + Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDTATAPG 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L + ++ + G V+ + Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALTGLTLQMTGAAMDGDRLTVSPRQGRALD 412 Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435 + +L + + + + S Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444 >gi|117926844|ref|YP_867461.1| hypothetical protein Mmc1_3570 [Magnetococcus sp. MC-1] gi|117610600|gb|ABK46055.1| protein of unknown function DUF1078 domain protein [Magnetococcus sp. MC-1] Length = 496 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 54/503 (10%), Positives = 134/503 (26%), Gaps = 30/503 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------ISP 47 MS+ + N I N+ N + + T S Sbjct: 1 MSIHQAMYAGSSALTNYGNAMTVIGNNLSNTNTTAFKGSRTTFEDVLIQTVGISGTRAST 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----------DHYN 97 + T V + ++ M S+ Q F +++ Sbjct: 61 QIGTGVGVSAIDQLMQQGGFAGTSTVTDLAIDGQGFFKVRDANPGSAQLGGGGGNATSSM 120 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 ++ + +L+ Y + IL +D + A+ + Sbjct: 121 DTFYTRAGDFKQNLDGYMVTNAGLILQGYAVDQTSGETSG--SMTDINLATYQSAEPKAT 178 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 IS S+ ++ DA A + + + + + D Sbjct: 179 TAISVGMMLQSDAAIITDANHSTYDPNDPASYNYATPIRVYDSLGQGHNVELHFKKTTDN 238 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + + + + + G ++ + G++ Sbjct: 239 TWNWYVAVPSEDLSAAQAGTGDLTNMMAVTGAMESAPTGAGYTAGVLTFDTYGRLDTEGS 298 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + E ++L F D I ++ N + + + + Sbjct: 299 TPITFQFTGNSSTAETQQIL---FDFGDAITADATNDFSIADGAVLYGSGTNTAEVANTG 355 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + Q S+ + + + ++ + Y + K + + Sbjct: 356 LLGSVQRASSFTTMSASQNGFSAGFLESLSVGLDGTINGTYTNGETKALYQIGLVDFDNE 415 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L + N E + S + I V++ E+ +I +++ Sbjct: 416 QALDQVGANLFA--ETHLSGVPREGEPNSGALGTIRSYTLENSNVDMSNEMVNMITTQRA 473 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + +++LI TD ML+ L+ + Sbjct: 474 FQANSRLITVTDGMLEELIALKR 496 >gi|332558502|ref|ZP_08412824.1| FlgK (HAP1) [Rhodobacter sphaeroides WS8N] gi|332276214|gb|EGJ21529.1| FlgK (HAP1) [Rhodobacter sphaeroides WS8N] Length = 1363 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 126/452 (27%), Gaps = 30/452 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L A L + E + S ++ D+L Sbjct: 62 VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + L + V+ + + +F T A + +R + + L +L Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVTGLAGQTAVEASQTLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + S + LD+RD LL ++S +G+ V Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ V + ++ Q + G ++ +V +LD Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347 +AR L+ + + G + + G + + + Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDTATAPG 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L + ++ + G V+ + Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALTGLTLQMTGAAMDGDRLTVSPRQGRALD 412 Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435 + +L + + + + S Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444 >gi|332531618|ref|ZP_08407515.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] gi|332038981|gb|EGI75410.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] Length = 512 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/513 (8%), Positives = 119/513 (23%), Gaps = 43/513 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 F + + N +S+ I NI NA+ + V Sbjct: 2 GFQQGLSGLNASSRSLDVIGNNIANANTTGFKSGRAEFGDVFASSIGASGAGTIGIGVEV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA------------------------------ 85 + ++ + ++ + F A Sbjct: 62 STVSQQFTQGNIAITNNDLDVAINGSGFFALQLQDGSRAYSRAGEFKLDPLGYVVTNTGA 121 Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 D N + + + + N + I ++ V N +T + + Sbjct: 122 QVMGFPTDPAGNRTSVTLQPMRMPTSQGIAANQTTAITASKFTLDSAATVWNQSTPSTSL 181 Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 + N + + DA Q +L + Sbjct: 182 ARFGTAITNYDSQGNEVPVELYFRKVAPNVWQVYTDSDNGDAGANQSQLGLLEFNTDGSL 241 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 S + + + + + + + N + + + Sbjct: 242 RASYTT-STASGALPATGPQADITVNNWNKLNDGTGNTSTAITINAVTYPAGTAIATLPT 300 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + + + + + L + + Sbjct: 301 TFAALDLTNANNNTALAFADYSVDVGTIDPDGAVGGTTTSSTNASMIINVTLPPSPNVTT 360 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + IS + Q+ + + + + + + + Sbjct: 361 IGLNGTGNISIDLSGIVQHNTRFTAGDLSQDGYPPGDMVGLKIEDNGIITARFSNGETQA 420 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 F +A L W+E S ++ + V+L Sbjct: 421 FGQLALANFRNVQGLSPTGNG--EWIETQASGQPIFGGPTEGNLGELRSGALEESSVDLT 478 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +EL ++ +++Y + + I D+++QTL+ Sbjct: 479 KELVNMMTAQRTYQANAQTIKTQDQVMQTLVNM 511 >gi|224436692|ref|ZP_03657696.1| flagellar hook-associated protein FlgK [Helicobacter cinaedi CCUG 18818] gi|313143190|ref|ZP_07805383.1| flagellar hook-protein FlgK [Helicobacter cinaedi CCUG 18818] gi|313128221|gb|EFR45838.1| flagellar hook-protein FlgK [Helicobacter cinaedi CCUG 18818] Length = 606 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/371 (11%), Positives = 115/371 (30%), Gaps = 34/371 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTI--SPENVT 51 +L+ N + NI NA ++ Y R+ + V+ Sbjct: 3 GILSSLNTSYTGLQAHQLMVDVTGNNISNASDEFYSRQRVLVRPEKPLYFQDYNLGRGVS 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V T + + + + + + + + +S Sbjct: 63 VETIQRIHDEFVFNRYRKAAEEAQYYDTHFTTLREASAFF-PEVDGVGIYNDLEEYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN ++ + + N++ + N + + +++ A +E+E+ I+ + R E+ Sbjct: 122 KDLAKNSTDPAQKQVLAKNSQVLSTNIKDTRARLVRLQQKASEELEVTINEVNRIAKEIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217 +N +K + A++ D+RD L + ++G + + + D Sbjct: 182 HINGKLKEMEDQRELKQANELRDRRDELEYNLQTLVGANVFKNHLDSNASIHPKLADFDD 241 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276 + G + + N ++ G + + +GK +L+ Sbjct: 242 EYVLNIGFGFNIVDGAMYHPIVLKKDDNHLNLNRVYFQGDDFKTVEITDKIVQGKAGSLI 301 Query: 277 QIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + N LD A+ I + + + ++ + L + Sbjct: 302 SLYNSGADGTRVGKIQDYINHLDIFAKGFIEATNSIYSQSAATQIRSDKLDVWSLNALVD 361 Query: 329 KLCQGISETIC 339 + Sbjct: 362 SNYNIKEGSFD 372 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 89/283 (31%), Gaps = 12/283 (4%) Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--PIFIDGV 257 S + ++ + V++ + ++ +F+ + T E I ID + Sbjct: 334 TNSIYSQSAATQIRSDKLDVWSLNALVDSNYNIKEGSFDVVVYSTQGEEIARKTITIDRI 393 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + A+ + + V + + S+ Sbjct: 394 TTMHDVVKAINENTDDNNDNNALNDVDDYFRAYYDNGTKEFNILSKNPSQGLYVAIQDNG 453 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 G L+ + I +N +Y + + +R + + G D+ N Sbjct: 454 SNFTGAFGLNKFFNGEYAHDIALNQEYAKDATLIRPW----------LTPVNGNFDVANM 503 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + F + + EY + G + + V + + + + Sbjct: 504 MQQLQYDDVDFYVNKYEKKQMRIPEYFQFLAGRVANQTEAAQRTKETKDSVLSAVKKEHL 563 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE+ LIK + Y + K+I D+M++TLL + Sbjct: 564 AISQVSLDEEMVNLIKFQGGYAANAKVITTIDRMIETLLGIKQ 606 >gi|20807880|ref|NP_623051.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|254478868|ref|ZP_05092232.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] gi|20516445|gb|AAM24655.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|214035181|gb|EEB75891.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] Length = 415 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/478 (9%), Positives = 105/478 (21%), Gaps = 63/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAISGLQAHQARLDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + S S Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGESILY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + D + + L + + + Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWFGMEPSTTTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ + T + I F + + Sbjct: 173 IGGN--------------------LNASTGIGQSISYNIIVYDTQGGSHVATITFTRQDP 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + S G + P Q Sbjct: 213 NTWNWSVSS-------QDPYISSVSVAGSTAITFGADGKIAPNTQA-------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + + N ++ + + + + ++ Sbjct: 252 ------------TGTLTFNMNTAVTNAQIGPVNIDLSKLTMFSTETDLRELSKNGNEAGS 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 300 LQSINIDKYGVVSGIYSNGRRQVIGQIALADFQNPMGLEKVGNTM--FINTVNSGEPMIG 357 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ VNL E +I ++ + + K+I +D+MLQ L+ + Sbjct: 358 AAGSGTRGSINPGTLEMSNVNLANEFVDMITTQRGFQANAKVITVSDEMLQDLVNMKR 415 >gi|326796591|ref|YP_004314411.1| flagellar hook-associated protein FlgK [Marinomonas mediterranea MMB-1] gi|326547355|gb|ADZ92575.1| flagellar hook-associated protein FlgK [Marinomonas mediterranea MMB-1] Length = 659 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 62/440 (14%), Positives = 149/440 (33%), Gaps = 8/440 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNM 62 ++ N + +S + +++ +N+ N D + Y R++T T+ V + Sbjct: 3 TSLLNIGLSGLQTSSARISTVGQNVSNVDTEGYNRQETATSSVLGGGVKINDTSRLVDQF 62 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + +S + + S + + +D + S Y+SK L++ + + S Sbjct: 63 RNQQVWSDNSKLNYYKTYSSMMDNMDNVVGED--SVSLNTYLSKSFTDLQTANSDPSSSS 120 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T + E +VQ +N A V + + ADK+I + ++ S+++ +N I + Sbjct: 121 ARNTAYSSFESLVQRYNEMASIVDEQKTTADKQINAVVESVNEITSQISNLNTEILKQET 180 Query: 183 -SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + A++ DQ++ L+ ++S + I +N M V + T L + + Sbjct: 181 QTGTSANELRDQQEQLVTELSSYLDIDVAYDDNELMTVKLAGSTPLVLQGSANEISLERE 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + + + +D + G + AL+ RD + L A VL S Sbjct: 241 SSGSDNLT--LKVDFGSHDVGASTDDIGGSLGALIDYRDEFSDEAERTLGLQALVLADSL 298 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + ++ + +++ G + + + + S S + Sbjct: 299 NTQNKLGLDADGNYGNNLLSTGDIEVTPNDDNGFSSGDIKVRVTEGASNELTTNSYEVEM 358 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + N + + + + N + + + S Sbjct: 359 ISNTQFVVKTYNANGKVVEQSNPVDTSTATPNSDGYFEVDGFGIEVQFDTGGTYSTEDKF 418 Query: 422 HMKSQVVFNHISESYSNTVG 441 + Sbjct: 419 SFVPTE--GAAKNLELSASN 436 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 50/372 (13%), Positives = 101/372 (27%), Gaps = 3/372 (0%) Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L++ S + K +D N ++ D + S Sbjct: 288 GLQALVLADSLNTQNKLGLDADGNYGNNLLSTGDIEVTPNDDNGFSSGDIKVRVTEGASN 347 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N ++ + ++++ + + + ++ V F+ Sbjct: 348 ELTTNSYEVEMISNTQFVVKTYNANGKVVEQSNPVDTSTATPNSDGYFEVDGFGIEVQFD 407 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T +K + + + + ++ + + Sbjct: 408 TGGTYSTEDKFSFVPTEGAAKNLELSASNGDDFALASPISVSKSSSNLSDVEISVSTITN 467 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN--PQYRSN 347 LD + P + N L T N Q Sbjct: 468 LDPATSGFSVGGGLDSTAPQSIVFTPDNTTYEVRDGAGNTLATVAGVTDYTNLLEQAGLA 527 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + D S + N+ D N + I + + +N + TL E + Sbjct: 528 AAAGYDISVSSAPKAGDEYNIEFNTDSENDNYNGLLLAEIQNA-SLVNGSETLTEAYSSF 586 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + S ++ V+N S GV+L EE L+K +QSY+ S ++I Sbjct: 587 VTSVGSLTSTLSSNETAAETVYNQSVNSKDQISGVSLDEEAVNLLKYQQSYSASAQVISA 646 Query: 468 TDKMLQTLLEGV 479 TLL V Sbjct: 647 ARTTFDTLLGVV 658 >gi|212634354|ref|YP_002310879.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212555838|gb|ACJ28292.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 640 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 124/405 (30%), Gaps = 24/405 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS+ + + A+ + Q A NI NA+ Y R+ + Sbjct: 1 MSM-DLLSIARTGVLASQSQLAITSNNIANANTDGYNRQVASQSALDSQRMGNEFYGAGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + L ++A + + S + + + + ++ ++ Sbjct: 60 YVSDVKRVYNDYAARELRIGATAASEAQTSYSKMSELDQLFSQ--IGSAVPASLNDFFAG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S S + L +++ NA ++ N N + + + +I + +EL Sbjct: 118 INSLSDIPDDLGLRDSLLTNANQLANNVNQMQKHLDGQMNQTNDQISAVTDRINEISNEL 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + LD++D L+ ++SE ++ + + V L Sbjct: 178 GNINRELMKSQ---GQDMQLLDKQDALILELSEYAEVNVVPLESGSKSVMLGGSIMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 K I S + G++ AL+ RD + Q +L Sbjct: 235 EVSMQVGTKPGDPHANELQ--ITASSGNKSLVVDGSKIGGQLGALVNYRDDTLIPAQLEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + A + +F++ + G I I D +L + + + Sbjct: 293 GQFALGVADAFNQAQSQGFDLNGQVGSNIFTDINDPSMQLGRAGALSTNTGNA------N 346 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 L N L+ D+ + N + G Sbjct: 347 LAVNIDDVAALTGNSYELSFTAPSTYELKDAQSGNVTPLTLNGTT 391 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 38/364 (10%), Positives = 94/364 (25%), Gaps = 5/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A V FN + + + I +I++ L ++ Sbjct: 282 DDTLIPAQLELGQFALGVADAFNQAQSQGFDLNGQVGSNIFTDINDPSMQLGRAGALSTN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + + ++ T +GTTL I+ Sbjct: 342 TGNANLAVNIDDVAALTGNSYELSFTAPSTYELKDAQSGNVTPLTLNGTTLEGANGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + ++ + GK A + Sbjct: 402 IASGAMASGDKFEIRPT---SSAATALSVTMTDGKGIAAAAPTITADAANSGNTSINLVS 458 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + P G+ A + + Sbjct: 459 IDNRNAAGFPTTGSELTFEIDPSAVPPTFEAFDAQGNSLGPAAPYTPPSISANGFTFEVD 518 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + N + N + + + TL + N+ + Sbjct: 519 STATTKERFTFDLSFAEGDN--SNLVNMAKLNESKIMNGGSTTLTDVFENTKLDIGGKTK 576 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + ++N + GVNL EE + L++ +QSY S +++ ++ TL Sbjct: 577 SAEIAVGSAGAIYNQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTATEIFNTLF 636 Query: 477 EGVK 480 ++ Sbjct: 637 SSLR 640 >gi|262276417|ref|ZP_06054226.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262220225|gb|EEY71541.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 435 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 45/486 (9%), Positives = 113/486 (23%), Gaps = 66/486 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 N A + A + + NI NA+ + T + V Sbjct: 2 ALNIALSGLAAAQKDMNTTSNNIANANTFGFKESRAEFGDVYSASIFSNAKTTTGSGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ + + + ++ A + + Sbjct: 62 SIVAQ---QFHEGSSIYTNNPLDLRISGNGYFSVANDKLATQD---NVLTRNGAFHLDKD 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L +D+ + ++ + + L + + Sbjct: 116 NNIVNSEGQFLLGYNVDS---------------ETLQVGSFEPRALNVPDQFGQPRASEN 160 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 V + + D S I + + Y Sbjct: 161 VEIGLNLPAGGSEKDPALFNPEDPDTYNKSTSATIFDSLGQPYKLTTYYVKDNVTPNKWA 220 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 S ++ F + G + A+ Sbjct: 221 VYYTATDATGEKPLSLTSGEFTSASGQVGHSVQFNSDGSVNAV----------------- 263 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + V G++ Q ++ QY S R Sbjct: 264 -------------NGGAPIQTVEFGPGGAGLEMNGADGTQSLTINFEEPTQYASPFEMRR 310 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ ++ Y + N + ++ L + W Sbjct: 311 FTEDGATTGYLAKVDIDPKGTIMATYSNGENVALGRVAMVRVSNQQGLSQAGN--TQWKV 368 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +S Q F + +++ +EL LI ++++ +++ + ++M Sbjct: 369 TQQSGEAIWGEAMQGAFGKVKSGTIEQSNIDMTQELVDLITAQRNFQANSRSLEVGNQMQ 428 Query: 473 QTLLEG 478 QT+L+ Sbjct: 429 QTILQI 434 >gi|167037660|ref|YP_001665238.1| hypothetical protein Teth39_1248 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116075|ref|YP_004186234.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856494|gb|ABY94902.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929166|gb|ADV79851.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 417 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 114/478 (23%), Gaps = 61/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + SK + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + D + + L + ++ A + Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPAATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + I+ N + + + I F K ++ Sbjct: 173 IGGN--------------------INASTEINGAISYNILVYDSQGGSHIATITFTKNDA 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + SS+ + G ++P Sbjct: 213 TTWNWSVS---------SSDPAISSVDGSGTLTFGADGRILPDA---------------- 247 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + + + +S + + S ++ Sbjct: 248 ------NGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + ++I +D++LQ L+ + Sbjct: 360 AAGTDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNMKR 417 >gi|124516303|gb|EAY57811.1| probable flagellar hook protein FlgE [Leptospirillum rubarum] Length = 457 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 55/493 (11%), Positives = 120/493 (24%), Gaps = 57/493 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M +L+ A + N + I NI N + + + + Sbjct: 1 MGVLSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNT 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + + A ++A+ F + Sbjct: 61 SQPGSGVYVDAIQQ---EFTQGSVQASTNALDLAIQGNGFLTV------RSKDGQKFYTR 111 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +L + S L Q + +Q + +D Sbjct: 112 NGELALDKTGRIVDTSNRAL------------QGYMNKNGRIQPVLSDILVPQTTVPPKA 159 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + ++ + K + + D L + T D Sbjct: 160 TQNVFSRINLDAGMTEKLKEGREFEKSSNIFDSLGIQHLLTYKFIPTSVAGQWAFQATMD 219 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G +L I++ + T + + + + N S G V Sbjct: 220 GASL-TKGGGSISYPPLGRKTPKTLKGMVGLIQFDGNGNVKSVNYGGSPL-KRDANGVVH 277 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++Q L + A + + + L + + Sbjct: 278 ALYQTTLADKAATPVSFDVVIPTKGQTIRPNRINGVTQQVLQLTQYNAPSSTVEETQDGH 337 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + L + ++ + + K +A N L Sbjct: 338 KSGDLNNLA---------------IGRDGKIVGSFSNGVQKVLGVVAIASFNNPGGLASV 382 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++E S + Q + + +L ++ +I E+ Y S Sbjct: 383 GGN--AYIESIASGVPNFGRPGQGGRGALLSNSLELSTTDLGRQMVDMITAERGYQASAS 440 Query: 464 LIMFTDKMLQTLL 476 +I + +L TLL Sbjct: 441 IIATDNTILNTLL 453 >gi|332533175|ref|ZP_08409044.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] gi|332037457|gb|EGI73911.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] Length = 455 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 56/484 (11%), Positives = 119/484 (24%), Gaps = 42/484 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55 FN A A + NI N + + N V Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ + + A+ + +S+ D + + +++ Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMTDDLSSQDLT----YTRAGAFKLNQDNFM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D++ + + S + +I + E L L Sbjct: 118 VDAKGNFLQAFPVDSSTGDTTSVSLSTTDPIQIPDSSGSPRATENVFLSFNLDATADAPG 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 T+S ++ VY S G Sbjct: 178 IAFDPTSSG-------------------------TYNSSTSTTVYDSLGEPHILQYFFAK 212 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-KIKALLQIRDSVVPIFQNQLDEMA 294 + T S +DG VV + G L S +P Sbjct: 213 EDDAAAGGTDNSWEVYATLDGKVVDATTGGEQTAPYTPLTTLGFNSSGLPSTTGGAANTN 272 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + ++ + + QY S Sbjct: 273 TTTFDEILLPAGSGTGLSTLLDNGATFPGTGIELNWRDENNTAGRIPTQYSSGFEVKALD 332 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 S ++ ++ Y + + + + L + W + Sbjct: 333 QDGSTVGRLAGIDIGTDGKIVASYSNGDSTFLGQVAMVRFPNSQGLSQVGD--TSWKQSI 390 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S F I+ S NL EL LI +++Y +++ + + Q+ Sbjct: 391 DSGEPVAGEAGSGTFGGINSSALEQSNTNLTNELVDLITAQRNYQANSRALEVNSTIQQS 450 Query: 475 LLEG 478 +L+ Sbjct: 451 ILQI 454 >gi|315127353|ref|YP_004069356.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] gi|315015867|gb|ADT69205.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] Length = 440 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 114/483 (23%), Gaps = 55/483 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55 FN A A + NI N + + N V Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSAGKTKNGDGVQT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++++ + + A + + A D + + +++ Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFT----YTRAGAFKLNKDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D + + S +I + + V Sbjct: 118 VDAKGNFLQSFPVDEVSGDTTSVSLSTSSALQIPDSSGSPRSTSNVYTSFNVDSREDVIA 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 T S L + + N V T D T T Sbjct: 178 VPFDATDSTTYNSSTSTTMYDSLGEPHVLQFFFVKTAPNEWQVHGTLDKTPFDATGAATA 237 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++++ + P +G N G + + + R Sbjct: 238 TPSPLSTFGFDASGLPATTNGAP---NVGPTFTDVNLTGTNLSGILSNGAQFDDIAINWR 294 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G+ + QY S Sbjct: 295 DEAGTAN------------------------------------RTPTQYASRFEVKALEQ 318 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + + + + L + W + Sbjct: 319 DGATVGRLAGIDIGTDGKVVASYSNGDSTYLGQVAMVRFSNSQGLQQVGD--TSWKKSLT 376 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S +I+ S VNL EL LI ++++ +++ + + Q + Sbjct: 377 SGEPIAGEPGSGTLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQNI 436 Query: 476 LEG 478 L+ Sbjct: 437 LQI 439 >gi|225620340|ref|YP_002721597.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] gi|225215159|gb|ACN83893.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] Length = 423 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 43/473 (9%), Positives = 104/473 (21%), Gaps = 63/473 (13%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN-------------MFDKVL 67 + NI N + + R + + + Sbjct: 1 MDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRGGINPQQVGLGMMVATIDT 60 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 A+ + E + NNS + Y N S + Sbjct: 61 IHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSLDKDGYLVNPSNGYKVQGW 120 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 ++ + +E I + N Sbjct: 121 NAVLNPETG----------EMELNTSAGVEDVIIPVGSKDPARATANTKYFCNLQK---- 166 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 + + D T + + +N + + Sbjct: 167 -----------------------TGETHQSDLTIYDSTGIPRQLRATFTRTDVNRWDMVI 203 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + V VS+ L+ + + + ++ Sbjct: 204 DIPDATEGSVSVSAGDPVEGGGNNTFQLVFNDAGSLISVSDGTNTQTEGVLMPNVSFTYQ 263 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 E + L G Q+ S + + + Sbjct: 264 GTEGE-----------VNQTINLTLGEVGLFNGITQFESPSTTKAIEQDGYTMGMLEGFS 312 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + K +A N L + +++ N S + ++ + Sbjct: 313 FDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTL--FVQSNNSGAANIGTAAAE 370 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L E+ + +I ++ + + + I D+MLQ ++ + Sbjct: 371 GRGSIKAGTLEMSNVDLSEQFTDMIVTQRGFQSNARTITTADQMLQEVIALKR 423 >gi|218681812|ref|ZP_03529559.1| flagellar hook-associated protein FlgK [Rhizobium etli CIAT 894] Length = 286 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 156/286 (54%), Gaps = 1/286 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQGIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + SS Q+ L S + + + Y SP+ Y+ + L+++ Sbjct: 61 DALLRQYLKSSSQDSAQQALLSGLDDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTAPGS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + I A++V + N +++ VQ +RA ADK+I ++ L LS+ N+A+K Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATDVDKLNTLLSDFEKANNAVKTA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TAS DA LD+R+ L++IS+I+G++T R+NNDMV+ T+DGT LFETVPR + F+ Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTTDGTILFETVPRKVTFKSQ 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPI 285 + YT T N +++DGV + G+ G +++LLQ+RD + P Sbjct: 241 DVYTATILGNSVYVDGVALPRGSGATTTGQGSLQSLLQVRDEIAPN 286 >gi|260429561|ref|ZP_05783538.1| flagellar hook protein FlgE [Citreicella sp. SE45] gi|260420184|gb|EEX13437.1| flagellar hook protein FlgE [Citreicella sp. SE45] Length = 431 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 58/491 (11%), Positives = 119/491 (24%), Gaps = 71/491 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENV 50 M++ + N + + + + A+I NI N+ Y R +T T Sbjct: 1 MTISSSLNAGVSGLSGNASRLAAISDNIANSSTYGYRRVETDFTALVMSSGTRTYTAGGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE-MMSADDHYNNSPTHYISKLRD 109 +V R ++ L + S+A + R Sbjct: 61 SVDNLRVVDQG---GALVSTSNATDLAIDGIGMLPVVAVSQYEATGEPELLLTSTGSFRI 117 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y + S L + + + ++ I+ + S Sbjct: 118 DENGYLASESGYYLMGWPANLDGTIPNYPRDTINGLEPIQFSLSLTGDPTTSVDMAL--- 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + AS + ++ D + S I + Sbjct: 175 --NLPATATQAGASGETEYLEIEYFDNVGISQSVSITFTPT---------------VPAT 217 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + +S + I G +L + D ++ Sbjct: 218 GMSNEWTMVMTDSAQAGAVIGEYTI---------TFDNTTGSGGTILSVADITGGVYDGA 268 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G E A +K + + V S Sbjct: 269 TGLFTVNVSGGPIEFHIGAVGETGGLSQLGDGFAPISISKDGSSVGNMVSVEVDENGYVS 328 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L D G + + +L Y +I +F Sbjct: 329 ALYDSGQSQVLYQIPLADLPNYNGMIAVDGSTFRP------------------------- 363 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S S L + ++ EL+ +I+ +++Y+ + K+I D Sbjct: 364 ---SPESGSFFLWDAGDGPTGSVKSYARQESATDIARELTDMIRTQRAYSSNAKVIQTVD 420 Query: 470 KMLQTLLEGVK 480 +MLQ + Sbjct: 421 EMLQETTNIKR 431 >gi|257095359|ref|YP_003169000.1| hypothetical protein CAP2UW1_3821 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047883|gb|ACV37071.1| protein of unknown function DUF1078 domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 417 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 58/483 (12%), Positives = 109/483 (22%), Gaps = 78/483 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 F + + + A+ I N+ NA + + + V Sbjct: 2 SFQQGLSGLSAAATALNVIGNNVANASTVGFKGANAHFADVFASSLGIVGASQVGIGVGV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 S + L ++ + F + + + E Y Sbjct: 62 SSIQQQFTQGNLTTTNNGLDLALNGGGFFRMSD-------DGAITYTRNGQFHIDKEGYV 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L A+ + +S E+Q + + Sbjct: 115 INDLNLRLTGY---PADALGAISPSSPVELQLSANQIPPRATSDPLSGNLTAVL------ 165 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 LD RD + + VY + G + + Sbjct: 166 --------------NLDSRDKVPPITPFNFANPDTYNFSTATSVYDTLG--VAHNLTTFY 209 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + +DG G + AL Sbjct: 210 ILNAPTDPPGGEWTVWATLDGADPQVLPGGNLIFDTSGALTAASAKQTLPT-------WA 262 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + G+ + P + QY S S R Sbjct: 263 LTSGAVTPWSPGLLDYTGT---------------------------TQYGSESSVDRLTQ 295 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y + +N +A L N W + Sbjct: 296 GGYSAGSLTGMGVGSDGIIQGRYSNGQTRNLGQVVLATFADPNGLKNLGNNQ--WSSSSA 353 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I S V+L +EL +I +++Y + + I D++LQTL Sbjct: 354 SGPELVAAPGSGSRGVIQSSAIEDSNVDLTKELVDMITAQRNYQANAQTIKTQDQVLQTL 413 Query: 476 LEG 478 + Sbjct: 414 VNL 416 >gi|83944165|ref|ZP_00956621.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] gi|83845032|gb|EAP82913.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] Length = 433 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 60/486 (12%), Positives = 127/486 (26%), Gaps = 59/486 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56 MS+ + + S+ SI NI N++ Y R T T V++ Sbjct: 1 MSISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRGFAHMVTTTASGGNGDGVLSVN 60 Query: 57 SEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + +S+ F A+ + N + Sbjct: 61 AVEELDIATAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYML-TRAGSFLPDEQGN 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 KN + L ++ TS ++++ + N Sbjct: 120 LKNAAGYYLAGYPYGLEGDIGSVDRTSFKDMETVNIG----------------------N 157 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I S A L +D G Sbjct: 158 LNISAGVTSTITAFGNLPSQDT---------------------------GQADPGAPFVT 190 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + S + + A G + I + + Sbjct: 191 SSEVFTALGESQRVSFSWAPGTTANTWDLAIADQNGNGLGSVTIEFNNAGPAAGSPLSYS 250 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + V + + +G+ + + G Q+ + S D Sbjct: 251 NINSTATAPAAFTVDPATGVATITLDNGVVPQEIDITLGKPGAFDGISQFAGDFSLAFDR 310 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 S L + + L + + + PVA + L+E N + Sbjct: 311 DGSSAGELVRTE-ITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGN--AYRLSG 367 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + S + I+ V++ +E++ LIK +++++ + K+I D M+ Sbjct: 368 ETGSFSALQANSSTVGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDE 427 Query: 475 LLEGVK 480 + Sbjct: 428 TTRLKR 433 >gi|304409972|ref|ZP_07391591.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|307302315|ref|ZP_07582073.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] gi|304351381|gb|EFM15780.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|306914353|gb|EFN44774.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] Length = 641 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 118/404 (29%), Gaps = 20/404 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L + S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFAGMNSV 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + NA++V + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + I V+ + + G++ A+ RD + ++LD++A Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L + + D Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGNTGNATLG---VTIDD 353 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 S+ + + + + + Sbjct: 354 SSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSG 397 Score = 99.7 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 100/364 (27%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + G + A V NFN + + I +I++ L + + Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T L + + T G+TL I+ Sbjct: 342 TGNATLGVTIDDSSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + + D + T P + + Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + + TL + N+ + Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNSGKSTLADVFENTKLDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 SSVR 641 >gi|23092315|gb|AAN08640.1| FlgE [Aeromonas hydrophila] Length = 453 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 113/483 (23%), Gaps = 42/483 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N ++ + N V Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNSIGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ F + ++ D + SY Sbjct: 62 GAVAQQFHQGALQFTNNSLDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLDENSYM 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L ++ + + +Q + D Sbjct: 118 VNNQGHYLQGYEVNVDGTPKAVSINATKPIQ--------------------------IPD 151 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 T + F D ++I ND Y S T+++++ Sbjct: 152 KAGVPTKTSTIEASFNFPSDAKPLAAGNTATDASIFDPTNDKSYYASTSVTIYDSLGSPH 211 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + L Sbjct: 212 VITQYFVKEADPLNVTQPASPTAWRMYMYEDKKPIDVSGGVPTTMAASVTTTPPLAARVT 271 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + GI Q + + Q+ S + Sbjct: 272 FDADGKMITPTTPATIKTIALGTPGAGIITNGADGTQQVELKLTNVTQFSSPFEVNKLTQ 331 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 S + + Y ++ +A + L + W + Sbjct: 332 DGSTVGRLTKVEITADGIVSATYSNATTLKVAMVAMAKFANSQGLTQVGD--TSWRQSLL 389 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I S V+L +L LI ++++ +++ + + QT+ Sbjct: 390 SGDALPGTPNSGTFGSIKSSSLEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 449 Query: 476 LEG 478 L+ Sbjct: 450 LQI 452 >gi|325289233|ref|YP_004265414.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964634|gb|ADY55413.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 447 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 119/478 (24%), Gaps = 31/478 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + ++ I NI N + Y + + Sbjct: 1 MMRALFSAVSGLQAHQKKMDVIGNNIANVNTVAYKASRVTFSD----------------I 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L + + A S + + T ++ + S + Sbjct: 45 LSQTLSSATGADSTSGRGGSNAKQIGLGVGIGSIDTLMTAGSTESTGNSTDLSIDGDG-- 102 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ N F + + L + + Sbjct: 103 --FFIVKNGSTGTYMFTRAGNFSIDDSGNLVTSDGLNVYGWLNYTVNTDGTYTFDTDSEV 160 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + D + + K +S + S + + + P M Sbjct: 161 EAINLYSDEDNGNKQILKAQATANVSLSGNLDAGESAVGSGLSDIGSSDPEAQYTTTMTV 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y + + + + P + SV + A + S Sbjct: 221 YDSLGNEHELTVSFTKCYVDASGTDP------VTTWYYSVAADSGDAALTDASGYLQFDS 274 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + +S P + I + S G Sbjct: 275 NGKLVTDDSSYSPTATMTVTPSSASGAGEYEIELDFSNLSTSADDGSVETKGVDGYPSGT 334 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ Y + + +A LL+ N ++ S Sbjct: 335 LEDISIDSNGIILGVYSNGIEQPLGMIALARFANPSGLLKTGSNY--YVATANSGEFTNG 392 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + +S V+L E S +I ++ Y ++++I D+ML+T++E + Sbjct: 393 VMAN---GALSSGTLEMSNVDLSTEFSQMITTQRGYQANSRMITTADEMLETIIEMKR 447 >gi|51597637|ref|YP_071828.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|186896771|ref|YP_001873883.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|51590919|emb|CAH22575.1| Putative FlgE-like flagellar hook protein [Yersinia pseudotuberculosis IP 32953] gi|186699797|gb|ACC90426.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] Length = 414 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 57/477 (11%), Positives = 117/477 (24%), Gaps = 71/477 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A N ++Q +I NI N+ K + T + P V V Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D + F ++E + R ++ Y N Sbjct: 62 K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L D A + + +L+I+N ++ Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + + + + + Y TTL Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTL------------- 204 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 P G + + + +V + G Sbjct: 205 ---------------------------PAGSVASEWAVHHTVDGGAATPPLTLQFTTTGE 237 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + I Q + R+ Sbjct: 238 LISGSGTTTAGVLKGNAINLHGTFNPAGAADYDIDIDYTGTTQLSQGFTTTRNKSDGYTS 297 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + N + + + + + +A + L+ +N W E N+S + Sbjct: 298 GVKNGERIESDGSVYATFSNGERMLQGKVVLANFASPNGLVT--QNGTSWSESNKSGAAL 355 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 L + + V++ EL L+ +++Y S K+I D M+ L + Sbjct: 356 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 412 >gi|163856435|ref|YP_001630733.1| hypothetical protein Bpet2124 [Bordetella petrii DSM 12804] gi|163260163|emb|CAP42465.1| flgE [Bordetella petrii] Length = 413 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/476 (9%), Positives = 93/476 (19%), Gaps = 68/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + N A+Q I NI N+ + + V + N+ Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVSAINQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + D + + Y N Sbjct: 62 SVGNVTVTGGEYDIAIDGPKGF-----FRLTDPSGGVFYSRNGEFLVDKDFYLVNAQGYR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + Sbjct: 117 LTGYAAGAVGSAPV----------------------------DLRLPQGNIAPKPTDAAG 148 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + D D + + + + L + + N Sbjct: 149 LQTNLNANADAIDPATSPFDPTLASTYTDSVPTTVYDSLGNAHQLTQYFVKRAGDTVTNE 208 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 +DG + +A G L Sbjct: 209 SVYE---VYYTLDGEAMDPTTEAAGVWGGATTL--------------------------- 238 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + + + Sbjct: 239 TFDAAGRLTSAPTVDLSFATPGGTTSPADPLAITMSYDGVTQYGSDFSPKITQNGYSSGE 298 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ L +Y + +A N L N W E S L Sbjct: 299 YSGLSINSDGTLQANYTNGETAIIGTLALANFNNVQGLQPVGNN--AWAETGASGQPTLG 356 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V++ +EL +I +++Y + + I D+++Q L+ Sbjct: 357 QPGTNGLATVVGQAVEASNVDMSKELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 412 >gi|77463646|ref|YP_353150.1| FlgK flagellar hook-associated protein 1 [Rhodobacter sphaeroides 2.4.1] gi|77388064|gb|ABA79249.1| FlgK flagellar hook-associated protein 1 [Rhodobacter sphaeroides 2.4.1] Length = 1363 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L A L + E + S ++ D+L Sbjct: 62 VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + L + V+ + + +F T A + +R + + + L +L Sbjct: 120 NGLGATPRDSALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + S + LD+RD LL ++S +G+ V Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ V + ++ Q + G ++ +V +LD Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347 +AR L+ + + G + + G + + + Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDIATAPG 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P L + ++ + G V+ + Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412 Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435 + +L + + + + S Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444 >gi|309779453|ref|ZP_07674214.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA] gi|308921694|gb|EFP67330.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA] Length = 645 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 67/450 (14%), Positives = 156/450 (34%), Gaps = 16/450 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N + A NI NA Y R++ + T + + V Sbjct: 3 SSLLNIGASGLRVADINLQVTGNNIANASTPGYSRQEAVQTENIPLYAGVGYLGQGANVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + ++ L S + +D N+ T ++ ++ + Sbjct: 63 TVKRIYDQFLTAQVQSGQASTSAADQLNSLVSGLSKYMSD--SNSGLTSSLTSFFNAADG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + S+ + ++ A + FN+ A ++ + + + +++ +IS + ++ + Sbjct: 121 LASKPSDTTARQVFLNAAAGLQSRFNSIAGQLSSLNSQVNTQVQTQISAVNGTAQQIAAL 180 Query: 174 NDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ND I AS A+D DQRD L+Q +++ I S + + +Y +G L + Sbjct: 181 NDQISKAEASTGQPANDLRDQRDQLVQTLNQSIKASVVQTGDGQFNIYVGNGQALVQGNQ 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y T S G V+ + S + G + L+ R++ + QN L Sbjct: 241 SYQLTAVPSQYDPTQLSVGYKSPGGTVNID-DSQLGGGALGGLMDFRNNTLIPAQNSLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + ++ + ++ G + +N Sbjct: 300 LATAVSADVNAQNKLGMDANGKMGTDLFSVANPSVAPSTNNTGSGSLTASITNANAGQGY 359 Query: 353 DGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D + + V ++ + + + + + + L+ N+ Sbjct: 360 DYQVKYQGGAYTVSHYPDGSASVTVSSWPTTIDGVTLNLSGTMNSGDSFLVRPTANAAAT 419 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 ++ +D H++ S VV N S + + Sbjct: 420 MQTLTTDYHNVAAASPVVLNQGSNNTGSAT 449 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 36/436 (8%), Positives = 110/436 (25%), Gaps = 1/436 (0%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 +++ ++ + V + + G Q + + + SP Sbjct: 207 QTLNQSIKASVVQTGDGQFNIYVGNGQALVQGNQSYQLTAVPSQYDPTQLSVGYKSPGGT 266 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 ++ L + D T+I + + + +V ++L Sbjct: 267 VNIDDSQLGGGALGGLMDFRNNTLIPAQNSLGRLATAVSADVNAQNKLGMDANGKMGTDL 326 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + + + + Q + + + V S Sbjct: 327 FSVANPSVAPSTNNTGSGSLTASITNANAGQGYDYQVKYQGGAYTVSHYPDGSASVTVSS 386 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 T + V +++ + + + + V L Q ++ Sbjct: 387 WPTTIDGVTLNLSGTMNSGDSFLVRPTANAAATMQTLTTDYHNVAAASPVVLNQGSNNTG 446 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNP 342 + L + + + +S + + Sbjct: 447 SATVSSLGVDSTYAGSPLTSPINLTYSSAVGGSLSGFPGSVTVTVGGTSTTYAGGTAPYT 506 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q + + ++ ++ + + ++ Sbjct: 507 QGATYAFNGVQMTLSGSPGNGDTFAISANTANSTDNRNASALAKLRNSNLLDGGTTSIGS 566 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + + + + + + ++ + GV+L EE L+K +Q+Y S Sbjct: 567 AWNNLVTQVGVQANRASTNLTSQKALLASSTQQQQSVSGVSLDEEAMNLMKYQQAYQASA 626 Query: 463 KLIMFTDKMLQTLLEG 478 K++ + + +LL Sbjct: 627 KVMQTANSLFGSLLSI 642 >gi|311030122|ref|ZP_07708212.1| Flagellar hook protein FlgE [Bacillus sp. m3-13] Length = 493 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 47/499 (9%), Positives = 118/499 (23%), Gaps = 27/499 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48 +L + N + I NI N + + + Sbjct: 1 MLRSMYSSIGALRNFQTKLDVIGNNIANVNTYGFKKGRATFQEMMVQQLSGASGPAAGKG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + L + + F A+ + +S T+ Sbjct: 61 GVNAKQIGLGSMISTIDTIQTQGSLQTTARPLDLALSGDGFFAVASIADVTRVNVDSDTN 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 Y L N ++ + N++ + + + + Sbjct: 121 YGDNKI--LGGAVNNAVAMNYTRSGNFYLDNNGYIVNSNGMYMVGETGEKRIPNDQIMEA 178 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 L+ + D + + D + + + + + ND + + Sbjct: 179 SNAALNSGEIFFDEYRDFRNDTNKFLDLSMKFLEAQRTFEDAEKAN-LESGGNDPQLAAA 237 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 F N+ ++ ++ S + + A I V Sbjct: 238 ATAAETARDNAATQFNDFNTDIYVNQRTAFTTSAQNMNDGIDSFIGETGEVAYRMIDPVV 297 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + ++ L A + + I + + Sbjct: 298 QDPTIPMPTAATANVNDLSN---LVSYAQSVKTSLDTAYKTFENFIAKAEMIQQPTWTDS 354 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 S + S + K + L + Sbjct: 355 LSGSPGLIQIPPNARSFSISGDGKVNFIDQFGDLKVAGQLMLAKFPNDAGLERIGENLFQ 414 Query: 403 YARNSIG-WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + NS + ++ I V+L EE + +I ++ + + Sbjct: 415 QSNNSGTMDKNGDGIQLEEMFKPGDDGAASIISGTLEMSNVDLSEEFTEMITAQRGFQAN 474 Query: 462 NKLIMFTDKMLQTLLEGVK 480 ++I +D++LQ L+ + Sbjct: 475 TRIITTSDEILQELVNLKR 493 >gi|220905353|ref|YP_002480665.1| hypothetical protein Ddes_2091 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869652|gb|ACL49987.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 499 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 40/508 (7%), Positives = 126/508 (24%), Gaps = 39/508 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + + ++ N+ N Y ++ + + Sbjct: 1 MNSSLYIGATGMKGLAEGMNVTTNNLANVSTIGYKQQGILFSDIFYAEQGGMGNWWNAQD 60 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + + S L + ++ + F + + + + Sbjct: 61 NSRVALGQVGMGLQVESVRTLFGQGALESSNTVTDMAISGKGFFQVTDGV-------DLY 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 R E + S L + + + + + + +++ Sbjct: 114 YTRAGDFRPDREGVLRTPSGLALNGYKYNADGSKGGLQQITIDKFATMPSKSTTSVDMRF 173 Query: 161 SNLRRFLSELTVVNDAIK--------FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + + N + A+ + + + ++ Sbjct: 174 NLGLETPNSTDAANPYFSLLNTYDANASPPLSNLAYGYAQSITLYGENGNQQQATIYFDA 233 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 +D PRD N + + + + G + + +G Sbjct: 234 APSDRPGSVVQYLISTGNTPRDENGLAPGTGALMTGTLTFDAKGQLTDMTAFTPSAEGSK 293 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 ++ Q+ + + + L Sbjct: 294 DLADWAPSALSDGGLPQMTVNGVATTVNLGISAAGGWQNAPANAAAVGASQNALGGMGQD 353 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 S+P R+ + + + +++ D++ + ++ + + PV Sbjct: 354 ATVAVDATTNYKGSSPVTRRNNQNGYPEGFLSNISISANGDVVGLFSNNQSMDLWQIPVC 413 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 + L N + D+ + I V++ E++ +I Sbjct: 414 RFTSEDGLRREGHNMFS--ATADAGQMDMGEAGTENYGTIRAYNIENSNVDVATEMANMI 471 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++K++ D+MLQ +E + Sbjct: 472 ITQRGFQSNSKVVTTADQMLQKAVELKR 499 >gi|325921024|ref|ZP_08182906.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] gi|325548506|gb|EGD19478.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] Length = 407 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 102/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E A + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + S ++ Sbjct: 122 LQVFAPNPSGNGFDVGRLSDLQLL------------------------------------ 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D + S + T+ N V + +S Sbjct: 146 ----------TTDSPPKSTSTVNLAFTLPGNATAPTVTPFNPADDKTYSHSTGGINVYDS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ F+ + Q G Sbjct: 196 LGVSHVQTSYFVKTANPNEWQVHNYVDGAAVGAPTA-----------------------L 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + G+ D + + + QY + Sbjct: 233 QFSDTGALTNPANGIIAMDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + + Sbjct: 293 LNEISIDTSGVVFARYSNGADKALGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARIG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|331007440|ref|ZP_08330617.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC1989] gi|330418747|gb|EGG93236.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC1989] Length = 1062 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 64/454 (14%), Positives = 143/454 (31%), Gaps = 19/454 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + + + ++ NI NA+ Y R+ T Sbjct: 2 TSDILGVSISGLRVSQNALRTVGHNIANANTAGYTRQSTDINSMGGTQTGVGFLGNGSYT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ + + + + A+D + + + +++ Sbjct: 62 SNIERVVNEFVTAQVRQDTTLHSELTIYNQNISQLNDLLAND--STGLSQGVQSFFSAVQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + + + ++ A + FNT A V + + I +SN+ +E+ Sbjct: 120 TASDSPTSLASRQLLVSEASNLADRFNTLAARVDAVNEGVVQGIRAGVSNVNNLTAEIAS 179 Query: 173 VNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N+ I + S +D LDQRD L ++S +I +S V++ N + V +G L Sbjct: 180 LNNKIAEFSGSQSASPNDLLDQRDNALLELSALISVSVSVQDGNQINVTVGNGIPLVLGS 239 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + N + I + +S + SA G+I LL +++V+ N + Sbjct: 240 QQTSIAVGQNEFDPQKP--EILLVNNSISESITSAFSGGEIGGLLDFQNTVIDSTYNDIG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + +F++ +N G I N + NP L Sbjct: 298 RIAISIADTFNQLQSQGLTLDNAYGSDIF----TDINDTAIAQERILSNVNNGSGNPDIL 353 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + S+ + + + + + T+ + + Sbjct: 354 VNINDSSQLTTSDYSLTIDDGAGVYQITRLSDNTDVASNLIPTTFPATISFDGLDVVINS 413 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 L ++ + S + V L Sbjct: 414 GGFSGGDQFLIQANKTAAQNFSTTGLQASDVALA 447 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/432 (7%), Positives = 98/432 (22%), Gaps = 4/432 (0%) Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 R+ + A +S + + D+ + + Sbjct: 630 GGSDVRAYITDTAQGSALAFASPTHGAGDIVLQNYNADPDGTLDNAPAGQANTLLGFDVE 689 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + V + + Sbjct: 690 ATTSTTGFTTVANANGISGIGLATNNYPVETLTVVTTNPTTGTTSSQNIFTTAGASARTT 749 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + A+ + + L + + + +++ + ++ + L Sbjct: 750 AGQLSNLTGVNANASNYMELSGSALTLTEPLQLSLNGESLIEYDAGVIATSVPSPALNNG 809 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + ++ I+ +S V + Sbjct: 810 EDFNDYLANEINNNTNLQALGIYATSAYDASTDTFHVSINSPLGDDFSVELTAAATGGGS 869 Query: 291 DEMARVL----IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + S + + L + + Sbjct: 870 VSVNDGVGTNVALTGSGTNTSSQVVIGGRIDVSLSSDVSLSTNPETSLLFGDSSADGFAQ 929 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + L + + + + + + + E Sbjct: 930 TAYMGIQASISGTPQTGDYFTLGFNTNAESDNRNGISMSGLQQASTIEGETQSFQETYNK 989 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + N + S + + V + ++ GVNL EE + LI+ EQ Y+ + ++I Sbjct: 990 LVETIGINANSSQNNTEAAANVLEQTTSLRNSISGVNLDEEAADLIRYEQLYSANAQVIT 1049 Query: 467 FTDKMLQTLLEG 478 + LL Sbjct: 1050 VARDLFDRLLSS 1061 >gi|89075502|ref|ZP_01161913.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium sp. SKA34] gi|89048774|gb|EAR54345.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium sp. SKA34] Length = 778 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 53/408 (12%), Positives = 132/408 (32%), Gaps = 20/408 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + + +Q NI N Y R+ + + Sbjct: 3 SDLMQLGISGLRTSQKQLDVTSHNISNVHTAGYSRQVVDQKAADAQWSGGNYYGSGAYID 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + L ++ + + Q + + ++ N + ++ +S+ S Sbjct: 63 SVNRAYDQFAARELTLSTTQLEASDVRQQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + ++ +TV+D+A + ++FN+S + IR D ++++ + + + E+ + Sbjct: 121 LSDHPNDLGSRQTVLDHANQAAKSFNSSHEMLTNIRRDVNEQLGVTLDRVNALGQEIAAI 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232 N +++ HD LD++ L+ ++++ ++ + + V G TL V Sbjct: 181 NTSLQEM-PDGDQNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + G + A+L IRD V+ +++ Sbjct: 240 SSQLKMVNGDPDLEDKQIALINGNQAKPIKSDDI--GGGLGAMLFIRDDVIDKSLDEMGR 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G + + N + + Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAIGSALFSDV----NSPTLVKERVLKPLGSQTDIDVKID 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 D ++ G + + N+ D A I++ TL Sbjct: 354 DVNALKTGDYELTAEFDGTDYSFRLFDPAGNEMKKPDGSAFISSTGTL 401 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 40/391 (10%), Positives = 93/391 (23%), Gaps = 7/391 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 ++ L + L+ + + + R I + Sbjct: 389 PDGSAFISSTGTLPVEVNVDGLTLTMNTVMGNPPATGQSETVIIQPMRRGAANISVEMSD 448 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 L + T + + + + +++ + Sbjct: 449 PRGLAGHRQTALIEANPNNAGTAALTTVTDNTPDAVAGNYQIDIINSADLTATNGTGNTG 508 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPK 269 ++ ++ N I G V+ Sbjct: 509 TAQFDAIKGAAAEAAQGVYTLSLNATGDKISMVDAASNPINLIDETGTPVTELDYPLTTT 568 Query: 270 G-KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 G + + V + D + + L D Sbjct: 569 GNTLTMVASDGSQVSVATLGAGAVVGDTFTLEIKTSDKLTVKNTQTNTLVDLDDGSGTPV 628 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + + N G + + I Sbjct: 629 QALAYPLTNANKEITFAGQATPTFSLTDNGQAGD-NFTVSLGRSSAVGGNSNFLAMQQIQ 687 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 ++++ + +S++ +Q+ F+ SE SN GVNL EE Sbjct: 688 HEKTMNEGKSSVIDLFEGLATDIGMMKSNADKTAEVNQLDFDAASERVSNLSGVNLDEEA 747 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + L+K +QSY S++++ + TL+ V Sbjct: 748 ANLMKFQQSYMASSRIMSVAKETFDTLMRAV 778 >gi|317492428|ref|ZP_07950857.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919767|gb|EFV41097.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 414 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 53/476 (11%), Positives = 116/476 (24%), Gaps = 67/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 FN+A + N A+ I NI N+ + V S ++ Sbjct: 2 GFNQAVSGLNAAASNLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVKVASVQQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + + F +++ + + +++ N Sbjct: 62 TDGITTTTNRGLDVAISGNGFFRMQDA------NGGVYYSRNGQFTKNQDNFLTNAQGVF 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + I++ + S ++ + Sbjct: 116 L------------TGYPAAGSPPTIQQGAQPSPIQIPTGMMPAKASSSGNMSMNLNSSHE 163 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ +D D S I + N ++M +Y G + T P Sbjct: 164 VPKNSPFKVDDVDSYTYATS--ITTYDSLGNTHNMNLYFVKGAPVAATPPATGMTTPWTV 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y+V S + Sbjct: 222 YSVDSAAAAGTAPQNA-----------------------------------------GKL 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E D L + + ++ T + + Sbjct: 241 EFDQNGTLQNPGTPLALNMAANNGAPAQNFNLTFTGSMQQNTGKD-GVTAKSQDGYAAGE 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L N W E S + Sbjct: 300 MTGYQINDDGTITGTYSNQQTQLLAQIVMANFANPEGLQSEGNNM--WKESATSGQAIVG 357 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 358 VAGASGLGALTSGAVEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 413 >gi|160876197|ref|YP_001555513.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195] gi|160861719|gb|ABX50253.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195] gi|315268387|gb|ADT95240.1| flagellar hook-associated protein FlgK [Shewanella baltica OS678] Length = 641 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 110/352 (31%), Gaps = 17/352 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNNLFSGLNSI 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + NA++V + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + I V+ + + G++ A+ RD + ++LD++A Sbjct: 239 SMGTQAGNPFPKELQLNSSISSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + +F++ + G I I D L + + Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGNTGNATLG 348 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 98/364 (26%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + G + A V NFN + + I +I++ L + Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T L + + T G+ L I+ Sbjct: 342 TGNATLGVTIDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSILSGGSGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + + D + T P + + Sbjct: 461 NRNAANFPVTGSELTIKLDTTVLPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + N TL + N+ + Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 SSVR 641 >gi|170683657|ref|YP_001744098.1| flagellar hook-associated protein FlgK [Escherichia coli SMS-3-5] gi|170521375|gb|ACB19553.1| flagellar hook-associated protein FlgK [Escherichia coli SMS-3-5] Length = 547 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 51/546 (9%), Positives = 134/546 (24%), Gaps = 70/546 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYISKL 107 + E L A + + + M + + + L Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF- 166 + E + + + +++ + Q ++V + +I + Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180 Query: 167 ------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 S +++ + + + +D I+ G S + + Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + T I+ N N + G++ +Q + + Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300 Query: 275 L------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 L D+ ++ ++ + K +A + + Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + Q + + N + P + + + D+ Sbjct: 361 DYKISFDNNQWQATRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420 Query: 383 NKNFI------------------------------FDPVAGINTNVTLLEYARNSIGWLE 412 + + + + + + + Sbjct: 421 VNMDVLITDEAKIAMASEEDVGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG 480 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + V +S + GVNL EE L + +Q Y + +++ + + Sbjct: 481 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 540 Query: 473 QTLLEG 478 L+ Sbjct: 541 DALINI 546 >gi|77918787|ref|YP_356602.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] gi|77544870|gb|ABA88432.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] Length = 413 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 41/491 (8%), Positives = 118/491 (24%), Gaps = 89/491 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M+L + + N + I NI N + + T+ + + + Sbjct: 1 MALSSALYSGISGMNTNGTAMSVIGNNIANTNTVGFKSSRTVFSDLLASSVNGSGGASQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + S + ++E + + Sbjct: 61 GRGTGLSTVDNLFSQGTFETTESQTDLAIEGEGLFVVRE-----EGAESLYYTRAGSFSF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E + N + N Sbjct: 116 DGEGFLTNAEGYRVQGKTYVNG-------------------------------------V 138 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L+ + + D+ + + I+ N+ S+ TT+++ Sbjct: 139 LSSADATDIMVDINAGIEAKMTDKITLSTNLDANEPVITAAFDPNDTTTYNYSNSTTIYD 198 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + + +D + Sbjct: 199 SLGNTHLMTTYFIKSDDNTWDWNVVDENDAT----------------------------- 229 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + G + Q I+ + Q+ ++ Sbjct: 230 ----LYSSATAGNSLEFDTSGKQISGGTATLGPLTPGAGTASQTINFALKNTTQFANDSQ 285 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + ++ +++ Y + +A ++ L + + Sbjct: 286 VISQTQNGYGAGNLTNISIDNEGNVLAKYSNGEEIAKSRIVLAKFSSFSGLRKEGASLFS 345 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + + + +I + V+L E +I ++ + ++K+I TD Sbjct: 346 --ATGESGPPRIGVPGTEL-GNIFTNALEQSTVDLAAEFVKMITTQRGFQANSKVITTTD 402 Query: 470 KMLQTLLEGVK 480 +ML L+ + Sbjct: 403 EMLSELINLKR 413 >gi|170742313|ref|YP_001770968.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46] gi|168196587|gb|ACA18534.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46] Length = 623 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 57/434 (13%), Positives = 127/434 (29%), Gaps = 20/434 (4%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENKNMFDKVLHAH 70 + +N+ N YVRR P V T + L Sbjct: 12 GLQVTQAAIGIVSQNVANQGTPGYVRRTLTPVSQPGNSGVATGTVTRALDASALRQLRLE 71 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 ++ L+ S A + + +++ + SL + + + + + Sbjct: 72 TAGAAYTDLVSSVHAQIDALYGPPGSDSALDGITNAFAASLRTLASDPASAANRSAAVTA 131 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH-- 188 A + +A VQ++R+ + ++ ++++ LS + +N I D+ Sbjct: 132 AGRLAGKVADAANGVQQLRSGLETQLGADVASASTLLSRIADLNLRIAAAGGGAGDSRAA 191 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN------------ 236 D DQRD + +++ + + T + + V T G TL + Sbjct: 192 DLADQRDQAITDLAKYMDVQTSPAADGTVSVQTGSGVTLVDHGAAASLRFDGRGALGPSS 251 Query: 237 -FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + G + + G I A + +RD + Q QLD++A Sbjct: 252 RYGTDATARGVGTITAVTPSGARIDLLADQGIRSGAIAAAVSLRDDTLVQAQRQLDDLAA 311 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + S++ + G + L + L G Sbjct: 312 GLSRAMSDRQATGTPATGAAGSGFDIDLTGLQAGNAVTLGLRSAAGVNRN---VILVPTG 368 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ + + A + T+ + G + Sbjct: 369 GNAPSPIDPALTDDPTALVVPFDISGGSSTYAGAIAAALGPGFTVSAVPSGAAGAVRILA 428 Query: 416 SDSHDLHMKSQVVF 429 S + + Sbjct: 429 SGVALTSASASITV 442 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 73/257 (28%), Gaps = 7/257 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + + T+ P I G + A G + + Sbjct: 365 VPTGGNAPSPIDPALTDDPTALVVPFDISGGSSTYAGAIAAALGPGFTVSAVPSGAAGAV 424 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + +A + ++ N + G E Sbjct: 425 RILASGVALTSASASITVPTSPTDTRNGAPQIPLFVDSGHGGSVYTGSFEGGAHLTGLAQ 484 Query: 347 NPSFLRDGGSVSKKFLWNVKNL-AGYPDLINHYCDSFNKNFIFDPVAGINTN------VT 399 + + + + + + + D+ + A + Sbjct: 485 RLAVNGAIAADTSRLVASADGTQDADAARPSFLADALTRESRTFSAASGIGGVQAPARAS 544 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 + +A+ I + + L ++ + +S T GV + EELS LI+++ +Y+ Sbjct: 545 VQAFAQAVIAAQGAAAAQAGQLDEGQKIALSTAQGRFSETSGVTIDEELSRLIQLQSAYS 604 Query: 460 ISNKLIMFTDKMLQTLL 476 + +++ +L TL+ Sbjct: 605 ANARVLTAARDVLDTLM 621 >gi|332701537|ref|ZP_08421625.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] gi|332551686|gb|EGJ48730.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] Length = 532 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 46/535 (8%), Positives = 128/535 (23%), Gaps = 59/535 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------TV 52 M L A + + S+ + I N+ NA+ + + V Sbjct: 1 MGLSNSMWTAISGLTSHSESMSVIGNNLANANTLGFKSGTVHFEDMFYSQLSTASGFDQV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + + + + ++ + Sbjct: 61 GHGSRVSTIYTN--YTQGPHEASSESTHVALGGKGMFVVTNKTSGSTYYTRAGNFTFNQN 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQ-------------NFNTSAREVQKIRADADKEIELE 159 Y + + ++ + + ++ + + +K+R ++ + + Sbjct: 119 GYLTDPNGYVVQGWKAADGSSDGKVTTVGSLKDIRLESYQSPPKATEKVRFASNLDKNSD 178 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 +++ ++ + D + + ++ + + Sbjct: 179 DNSVDPTNPFFSLFTNWDGTAETPLGDDRYAYQTTIKVYDEGGTAHDLTVYFDPVDAASM 238 Query: 220 YTS-----------------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 DG TL + + T T + + + Sbjct: 239 AADPNGKRVFEYVVTCDPAQDGRTLADGTQLNTTSSAGMLMTGTITFDGSGNMVGMNAFT 298 Query: 263 QGSAVPKGKIKALL-----------------QIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 SA + AL F D + + S+K Sbjct: 299 LDSAATGATVSALSSWVPAELSDNGMPTLTANFTGQPNASFTTDADALPIEIDFGLSDKT 358 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + N G + Y + + Sbjct: 359 NVGWNIPAGVTSAANVGTDFTLLPNYDTPDRSATAFTSYDESSTSTVQTQDGYAPGFLQD 418 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + VA + L + N E S + Sbjct: 419 ISVNDDGVVSGQYSNGQIIDLFVLAVADFDNYQGLKQEGGNLFS--ETTESGMARTGTAN 476 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ + V++ E+ LI +++ + + K+I TD ++ ++ + Sbjct: 477 VGGRGDIASATLEQSNVDMSTEMVRLITIQRGFQANGKVITTTDTLMGEVINLKR 531 >gi|83955135|ref|ZP_00963791.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] gi|83840464|gb|EAP79637.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] Length = 433 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 60/486 (12%), Positives = 127/486 (26%), Gaps = 59/486 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56 MS+ + + S+ SI NI N++ Y R T T V++ Sbjct: 1 MSISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRGFAHMVTTTASGGNGDGVLSVN 60 Query: 57 SEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + +S+ F A+ + N + Sbjct: 61 AVEELDISTAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYML-TRAGSFLPDEQGN 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 KN + L ++ TS ++++ + N Sbjct: 120 LKNAAGYYLAGYPYGLEGDIGSVDRTSFKDMETVNIG----------------------N 157 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I S A L +D G Sbjct: 158 LNISAGVTSTITAFGNLPSQDT---------------------------GQADPGAPFVT 190 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + S + + A G + I + + Sbjct: 191 SSEVFTALGESQRVSFSWAPGTTANTWDLAIADQNGNGLGSVTIEFNNAGPAAGSPLSYS 250 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + V + + +G+ + + G Q+ + S D Sbjct: 251 NINSTATAPAAFTVDPATGVATITLDNGVVPQEIDITLGKPGAFDGISQFAGDFSLAFDR 310 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 S L + + L + + + PVA + L+E N + Sbjct: 311 DGSSAGELVRTE-ITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGN--AYRLSG 367 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + S + I+ V++ +E++ LIK +++++ + K+I D M+ Sbjct: 368 ETGSFSALQANSSTVGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDE 427 Query: 475 LLEGVK 480 + Sbjct: 428 TTRLKR 433 >gi|329402361|gb|AEB91479.1| hook-associated protein 1 [Helicobacter pylori SS1] Length = 606 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ T L + Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDTFLGIKQ 606 >gi|210135277|ref|YP_002301716.1| flagellar hook-associated protein FlgK [Helicobacter pylori P12] gi|210133245|gb|ACJ08236.1| flagellar hook-associated protein 1 [Helicobacter pylori P12] Length = 606 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ F+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|34498334|ref|NP_902549.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC 12472] gi|34104188|gb|AAQ60547.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC 12472] Length = 595 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 47/394 (11%), Positives = 118/394 (29%), Gaps = 15/394 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----------DTMTTISPENVTVVT 54 VF + N A + NI N + Y + + + V + Sbjct: 7 DVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQGVDATS 66 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + M + S + I ++++ Sbjct: 67 VMRTYNQYLVTQMQTAQTNSSYYTTQSQQLQQVANMIQN--STQSVSPAIQSFFGAMQTL 124 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 ++ + + V+ A+ + + + ++Q+I+ + +I + ++ ++ +N Sbjct: 125 TQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQGVNNQISSSVQSINALAQQIANLN 184 Query: 175 DAIKFKT---ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I T + + LDQRD + ++++++G + ++ V G L Sbjct: 185 QQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPLVVGT 244 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + + + ++ + + G++ LL RD + Q QL Sbjct: 245 TTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQKQLG 304 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A L + + ++ + + Q + V S + Sbjct: 305 TLAINLSAAMNYQNSLGMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQLACA 364 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + V + +L Y NK Sbjct: 365 SNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKT 398 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 40/439 (9%), Positives = 116/439 (26%), Gaps = 15/439 (3%) Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS----- 110 + + + +++ + S + + + + + P + + + Sbjct: 156 QQIQQGVNNQISSSVQSINALAQQIANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLN 215 Query: 111 -LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L + N + D I + + +V T + + Q+ + + Sbjct: 216 QLVGATINKNSDGSYNVSIGSGQPLVVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTML 275 Query: 170 LTVV-NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + N + D Q+ + I+ ++ D+ T Sbjct: 276 PNNIMNGGQLSGLLNFRDGPLVQTQKQLGTLAINLSAAMNYQNSLGMDLNGNTPGAAIFQ 335 Query: 229 E--------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + M+ + + ++ + G S + + Q Sbjct: 336 DLSKYVNNPQYAAGQFGVVMSDPSQLACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDI 395 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + P + + + + + + +G + + + + + Sbjct: 396 NKTPPVLDSVTQHPSYQLTGMTVTASATSPITMTATITGTNGGGPYNVVVDPTLPNSYKL 455 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + N + + + + Sbjct: 456 QTTAVPPVDVGIGFQLSGVPATNQTFTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSY 515 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + +Q ++ SN GVNL +E + LIK +QSY Sbjct: 516 QGFYSTMVASVGNATNTVNLQNQTAQTTLQEAQKNNSNASGVNLDQEAANLIKYQQSYQA 575 Query: 461 SNKLIMFTDKMLQTLLEGV 479 +K+I T+L + Sbjct: 576 CSKVIQIAQSTFSTILNAL 594 >gi|21242727|ref|NP_642309.1| flagellar hook protein FlgE [Xanthomonas axonopodis pv. citri str. 306] gi|294625274|ref|ZP_06703913.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664591|ref|ZP_06729932.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927875|ref|ZP_08189099.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] gi|21108203|gb|AAM36845.1| flagellar biosynthesis hook protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600448|gb|EFF44546.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605648|gb|EFF48958.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541715|gb|EGD13233.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] Length = 407 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 40/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ + + + AL + ++ Sbjct: 208 KTANPNEWQVYNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + QY + Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|187478185|ref|YP_786209.1| flagellar hook protein [Bordetella avium 197N] gi|115422771|emb|CAJ49299.1| flagellar hook protein [Bordetella avium 197N] Length = 406 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 111/476 (23%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + ASQ I NI N+ + T N V + N+ Sbjct: 2 GFGQGLSGLQAASQNLDVIGNNIANSGTIGFKSGSTSFADVYANSRVGLGVKVAAVNQRF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + D +N + + N Sbjct: 62 TAGTVSGTGGEYDIAIDGAKGF-----FRVTDASDNIVYTRSGEFGIDKNFFITNAMGYR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + +A ++++ L+ + A Sbjct: 117 LTGYPVGGIGTNLVPLQVPQANIAPQETNA--------ASIQTNLNANAKIVPAAPAFDP 168 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + L + + + +N E + Sbjct: 169 ANQDTYTDLVPTTIYDSLGNSHQMVQYF-------------------VKRAPVNGESVYD 209 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + P +DG SS G + RD + Sbjct: 210 IYYTVDGKPATVDGGQPSSRLT-FNSAGVLTGGQPNRDIEITGL---------------- 252 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N + + + + Sbjct: 253 ---------------------GSTTSPARDITVRMNYQNVTHFGSDFGPKVTANGYSSGE 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ ++ Y + ++ +A N L + W+E S + Sbjct: 292 FSGISIEKNGTIMAKYTNGESQAVGTIALANFNNVGGLKPVGDS--SWVETGESGQAIMG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V + +EL +I +++Y + + I D++LQ L+ Sbjct: 350 QPGTNGLATLFGQALEQSNVEMSQELVNMIVAQRTYQANAQTIKTQDEVLQVLINM 405 >gi|167040321|ref|YP_001663306.1| hypothetical protein Teth514_1684 [Thermoanaerobacter sp. X514] gi|300914405|ref|ZP_07131721.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307724359|ref|YP_003904110.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166854561|gb|ABY92970.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300889340|gb|EFK84486.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307581420|gb|ADN54819.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 417 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 50/478 (10%), Positives = 111/478 (23%), Gaps = 61/478 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y + Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFK----------------EI 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F + + S+ G + + ++ R N ++ Sbjct: 45 FSQTIKGASAPQG---NGGGTNPQQIGLGVAIASIDTLFTRGGAQRTD------NPTDLS 95 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + N T A + D L ++ VN Sbjct: 96 IDGNGFFIVSKGGANLYTRAGNFS-FDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVP 154 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +D +I I ST + + D + Sbjct: 155 ISLKNWSSIDPAATTQLEIGGNINASTEINGAISYNILVYDSQGGSHIATITFTKNDATT 214 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + S+ I V S + Sbjct: 215 WNWSVSSSDPAISSVDGSGTLTFGADGRIL------------------------------ 244 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P A G + + + +S + + S ++ Sbjct: 245 ---PDANGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + ++I +D++LQ L+ + Sbjct: 360 AAGTDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNIKR 417 >gi|217972604|ref|YP_002357355.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223] gi|217497739|gb|ACK45932.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223] Length = 641 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 51/439 (11%), Positives = 120/439 (27%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ + V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNNLFSGLNSI 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + + NA++V + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I + N + L Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + I V+ + + G++ A+ RD + ++LD++A Sbjct: 239 SMGTQAGNPFPKELQLNSSISSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D L S + Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLG---------RAAGFSGNTGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + + + + Sbjct: 348 GVTVDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I Sbjct: 408 ASGDRFAIRPTAGASNGIE 426 Score = 99.7 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 99/364 (27%), Gaps = 4/364 (1%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + G + A V NFN + + I +I++ L + Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGN 341 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T L + + T G+TL I+ Sbjct: 342 TGNATLGVTVDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + G PKG A +I Q+ Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + + + + D + T P + + Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ + + N TL + N+ + Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLDIGSKTK 577 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637 Query: 477 EGVK 480 V+ Sbjct: 638 SSVR 641 >gi|78047586|ref|YP_363761.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036016|emb|CAJ23707.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 407 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 40/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVWSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ + + + AL + ++ Sbjct: 208 KTANPNEWQVYNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + QY + Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|119899027|ref|YP_934240.1| FlgE protein [Azoarcus sp. BH72] gi|119671440|emb|CAL95353.1| FlgE protein [Azoarcus sp. BH72] Length = 445 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 48/485 (9%), Positives = 124/485 (25%), Gaps = 54/485 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------- 54 F + + N++S+ I N+ NA + +T+ + Sbjct: 2 AFQQGLSGLNSSSKALDVISNNVANASTVGFKASNTIFADMYASAMTGGTSSLQVGIGSK 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ L A ++ + F L + + Sbjct: 62 VAAVTQSFTQGNLTATNNPLDMAINGNGFFRL------SRSDGSIAYSRNGQFDVDRNGN 115 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N + + L + + E + + + Sbjct: 116 IVNATGEKLTGF----------------QALDTSGTQTVFSGEPSVIYIDTT--NIAPRE 157 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + ++ + I+ + + I + Sbjct: 158 TGTASVGVNLDSSEKNPLNKNPVGSDINNFLNYTAIPVESY----------------NYT 201 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + +S S N F+ V+ + + + D P Sbjct: 202 TSMTVYDSLGNASLMNLYFVRDPDVAGVSPNTWTVYGRLSNDVVPDPADPALSTGAPLEN 261 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRD 353 I + P + + N G + + + + Q+ ++ Sbjct: 262 LGTITFTNLGVPDSTIAGNGVFNVTRTGAQLGTGADDLNFTLDLSRSTQWNTDSGVTTSP 321 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 +++ + + + ++ +A ++ L N W E Sbjct: 322 RQDGYTTGRLTGLSVSNTGVVQGTFSNGQVRDIARLALANFSSPQGLTSLGDNL--WAES 379 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + V ++ V+L +EL +I +++Y + + I D++LQ Sbjct: 380 FESGQPTVGAPGTGVLGSVTAGQIEESNVDLTQELVSMIVQQRNYQANAQSIRTQDQILQ 439 Query: 474 TLLEG 478 TL+ Sbjct: 440 TLVNL 444 >gi|317012896|gb|ADU83504.1| flagellar hook-associated protein FlgK [Helicobacter pylori Lithuania75] Length = 606 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ LL + Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDALLGIKQ 606 >gi|239907786|ref|YP_002954527.1| flagellar hook-associated protein 1 [Desulfovibrio magneticus RS-1] gi|239797652|dbj|BAH76641.1| flagellar hook-associated protein 1 [Desulfovibrio magneticus RS-1] Length = 710 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 57/463 (12%), Positives = 124/463 (26%), Gaps = 25/463 (5%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN 49 MS + ++ + NI N D + Y R+ + Sbjct: 1 MSGITSLLSMGAGALRANQAALQVTGNNISNVDTEGYSRQSVVLKDGQYVNTFTGQVGTG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + SA + + L + + + ++ + +S D Sbjct: 61 VVAQEVVRAHDKFVEAQYLTKVSARDRYQTLYNGLQSVQNL-VNESNTDGLNTSLSTFFD 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + +T++D+ E ++ + A ++++ AD+ I + L + Sbjct: 120 DWGDLTTNPESAAVRQTLVDDTETLLSTLRSEADSMRQLEDQADQSIAAGVDKLNELAKD 179 Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + +N+ I + ++ D RDV L++++ ++ I+ I D+ VYT+ G T+ Sbjct: 180 IADLNNQINQTQIDGKSNPNNLYDLRDVKLREMAGLVDINVIDNGKGDITVYTTAGQTVV 239 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + V F+ T G VS Q + L++ Sbjct: 240 DGVVA---FDFKFEQGQTVRQLSPTSLGPPVSDVQAYYDGADNDEYTLKVVSGGAVGGGA 296 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + D + +T + + Sbjct: 297 AFQVSLDGGRTWLTNDDGTTAVYQAEAEGSKVRVGDLDIWFANVDDPDTPAADNLNVGDT 356 Query: 349 SF------LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 L + + A D + L+ Sbjct: 357 FTLVPKKALYWYTTAGTAENITPQQYADGTDNTRRLTGGALAGAFLFRDEELGEFQDTLD 416 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 S+ W V + + V L Sbjct: 417 AFAKSMVWEVNRIHSQGAGLTNFSTVLGT---NAVSLTNVALD 456 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 44/376 (11%), Positives = 98/376 (26%), Gaps = 9/376 (2%) Query: 111 LESYSKNLSEDILGKTVIDNAEEV----VQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + + + + T+A + I + L Sbjct: 336 WFANVDDPDTPAADNLNVGDTFTLVPKKALYWYTTAGTAENITPQQYADGTDNTRRLTGG 395 Query: 167 LSELTVVNDAIKFKT---ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + A + + + + + + + ST++ N + + Sbjct: 396 ALAGAFLFRDEELGEFQDTLDAFAKSMVWEVNRIHSQGAGLTNFSTVLGTNAVSLTNVAL 455 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + D + + +DG A G L + + Sbjct: 456 DSRSSGLDFGDRLQSGAFMLYAYDANGNLAVDGSGNPVQASIAFTPGV--TTLDDLVTAI 513 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + L S S F D L + Sbjct: 514 DNAFSPPAFSDTYLDASISNNRLSISGVNGRTFQFGDDSSGVLAALGVNTFLTGSRASDV 573 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + + G + N F N TL + Sbjct: 574 AVNDVVGTDLNRINAGHVGADGLVAVGDNLTAKAMTELENTAISFYVAGKTTVNQTLTDN 633 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + + + + ++E +T GVNL EEL+ +IK + SY + K Sbjct: 634 YASLVSKIGSDTAAASYQATYQAALAAELNEQQLSTSGVNLDEELTNMIKFQHSYQAAAK 693 Query: 464 LIMFTDKMLQTLLEGV 479 L+ + M +T+L Sbjct: 694 LVSTANSMFETVLGLK 709 >gi|308183223|ref|YP_003927350.1| flagellar hook-associated protein FlgK [Helicobacter pylori PeCan4] gi|308065408|gb|ADO07300.1| flagellar hook-associated protein FlgK [Helicobacter pylori PeCan4] Length = 606 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIAKKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAK 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|238796904|ref|ZP_04640408.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] gi|238719164|gb|EEQ10976.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] Length = 407 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 46/476 (9%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++ + N ASQ + NI N+ + V S N+N Sbjct: 2 GFSQGLSGLNAASQALDVVGNNIANSQTVGFKSGSIAFADVFAGSQVGMGVQVSSVNQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D VL + +S++ F L + + + N Sbjct: 62 SDGVLGSGASSLDMGIQGNGFFRLTN------EAGRVFYSRNGQFKQDENGFIINNQGMF 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + I+ + Sbjct: 116 LTGYQASGTPP---------------------------------AIQPGAAVGPIQIPSG 142 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 L +E++ + ++ + ++++ Sbjct: 143 QMPARASDGGSLSGNLDSGTEVVDPAIKFDPADNKSYSSVSQVDGYDSLGNRHTINVYYV 202 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +E D + + Sbjct: 203 KTSDNEWKAYSSDTTSPKLDNNGDP------------------------------VYQEL 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E ++ + + Q S+ + + Sbjct: 233 ELKFDTSGQLTTKPAKLSVQSAAYNGGEPLDFELDMDGMTQQASDTAMASPTTTGYAPGQ 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N + +I Y + + ++ L N W E S Sbjct: 293 MNGYTVGDNGQIIASYSNGQQQLLGQVVLSNFTNPGGLSSQGDNC--WSETPASGQPVDG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L +E+ +I +++Y +++ I ++LQ L Sbjct: 351 IAGTGNLGNLFGNRLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSELLQILANL 406 >gi|332703535|ref|ZP_08423623.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] gi|332553684|gb|EGJ50728.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] Length = 556 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 44/563 (7%), Positives = 123/563 (21%), Gaps = 90/563 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 M L A + I NI N + + Sbjct: 1 MGLSASMFSGVTGLKAHGDKMGVIGNNIANVSTIGFKGARMFFQDVISQDIPTAAGIGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V+ + + A + F + + + S R Sbjct: 61 GRGVSIGAIYADYTQGGFETTGEATDLAIGGKGFF-----IVKKKNEDTSYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAE-----------EVVQNFNTSAREVQKIRADADKEIEL 158 + Y + + +L + ++ + +++ + + Sbjct: 116 DKDGYLVDPNGLVLQGWRAERSDPTAAVSGVTTNTNTVRIVGTPTDIRLNNFQSPPQETT 175 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + S ++ + + D + + + S + N N Sbjct: 176 NVTVISNLDSSEKSRAESTTDPFFAMFEVWDGTQETPLTEAQYSYQATVKVFDANGNAHD 235 Query: 219 VYTSDGTTLFET------VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + + + S + + S+ + Sbjct: 236 LTVYYDQVTLSNSGGRKVWEYMVTSKPTEDGRIFSNGGGVLTNARDTSAAGVLMIGTLSF 295 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD----------- 321 + ++ + Q + + + + P Sbjct: 296 NSSGELENQTAFTLQAGFNPAVPGDFKDLTNWELADFSQSGYPTFTANFLGEENASATDA 355 Query: 322 ------------------------------GIKDLDNKLCQGISETICVNPQYRSN---- 347 + L I P+++ + Sbjct: 356 LNPSLIELNLGLRNGNLSATGWSAVTDAQTMSTTFNTGLVNPTGTDIAGLPKFQGSELQA 415 Query: 348 ----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 S L L + L Y + +A N Sbjct: 416 TATTSYAEKGSSTLFQAQDGYAAGLLLGVAVDSDGILSGRYSNGQILELFAITLADFNNP 475 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L N +++ S + ++ I+ + V++ +E +I ++ Sbjct: 476 WGLRREGGNL--FMDTRDSGGAITNQANRGGKGSIASNSIEQSNVDMADEFVQMITTQRG 533 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + + K+I D +L ++ + Sbjct: 534 FQANGKVITTVDTLLGEVINLKR 556 >gi|332704817|ref|ZP_08424905.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] gi|332554966|gb|EGJ52010.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] Length = 725 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 53/410 (12%), Positives = 128/410 (31%), Gaps = 21/410 (5%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49 MS + + + A+ + +NI N + Y RR S Sbjct: 1 MSGINNIMDIARKGLFASQAAIEVTGQNISNVNTVGYSRRYVRLEESLQLDYRPGQIGMG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + S+ + L + + + + Y+S+ Sbjct: 61 VEAAEVLRHFDRFIETNYLDKSTMQQRYDTLFGSLKSVDSLLYESEKVGGISSYLSQFFG 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + +T++ + ++ + + ++ +++ A++ I+ ++ ++ R L + Sbjct: 121 DWQKLTSETDNYAVRETLLSDTNNLLSVIHQADAQMTRMQEQANQFIQQDVDDVNRILEK 180 Query: 170 LTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTL 227 + +N +K ++A+ D RD L+++++ + I+ I R N D + T G TL Sbjct: 181 IAGINGQLKQVEIPGQNNANALRDDRDRLVRELAGKLDINVITRGNEQDFTITTKAGHTL 240 Query: 228 FETVPRDINFEKMNSYTVTSESNP-------IFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + T + + ++ DG+ V G + Sbjct: 241 LQNEQTFSLKFEGPRVTSSLVAGSTFGADGKLYFDGMDDFEYTIDFVSAGTAGSEYSGDP 300 Query: 281 SVVPIFQNQLDEMARVLIGSFS-EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + +F+ LD L E AG+ ++ + S Sbjct: 301 TTAAMFRVSLDGGKTWLKDDNGVELQFPAGDEAHLVEVRGVKIWFGQQGSSTTPPSNGPE 360 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 V + P + + + N + F+ Sbjct: 361 VGDDFIVAPKSGVYWYQDTSTSENITPQIYANGEDNNRRITGGSLAGFFN 410 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 1/281 (0%) Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 +K+SE G + + + TS + ++ F ++ + + Sbjct: 445 KKLSEATGTYQVFDSTVPLANDTSGLFFRDKLQSGNLQFYAYDNTGAMVGTQSLDFTAYS 504 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + + +L +RD+ +F + + + S + F Sbjct: 505 SKIPPDANF-DPEDNSLEDVRDAFNDMFASMGLAVPADMQASIVNGSLRIASGNGHTFGF 563 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 D L ++ + + + G + + Sbjct: 564 GQDSTGLLAGLGINTYFSGTSARSIEINSAVASNTSLINAGHYNGAGEINEGDNLIASDI 623 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 +K G + TL E+ + + + S + + + + Sbjct: 624 AALKDKKLDIHTDFGGTAHQTLSEFYNALVSSVGGDTSSAQFNFSYQNSLAQDLDAQQQS 683 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVNL EE+S LIK + SY + KLI D+MLQTLL Sbjct: 684 LSGVNLDEEMSNLIKFQHSYTAAAKLISTADQMLQTLLGLK 724 >gi|323699248|ref|ZP_08111160.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323459180|gb|EGB15045.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 541 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 69/549 (12%), Positives = 129/549 (23%), Gaps = 77/549 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS SQ + + N+ N + Y R D + Sbjct: 1 MS-FGSMYVGATGVIAHSQGMSVLANNLANVNTIGYKRSDILFGDLISQQVATGGALYDN 59 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V R + L + A Q F + + + Sbjct: 60 GDVRINQMGMGVAVSAIRGI---FTEGALSETTEATDLAISGQGFFGVNDP--SGTIRGA 114 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE--------------VVQNFNTSARE 144 S R E+Y N L D V +AR Sbjct: 115 SHYTRAGDFRFDNEAYLVNSEGYRLQGFAYDRETGEWATAVSDVQLPYEDVDVDGQTARV 174 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 V+ + + N A + + L + S Sbjct: 175 VRSQPFATTSVEVVTRLDHSAASQISNEDNPFFAMLEAYTANQSNAASPFGDGLPQYSTA 234 Query: 205 IGISTIVRNNNDMVVYTSDGTT------------------LFETVPRDINFEKMNSYTVT 246 I + N+ +M +Y T + E F + Sbjct: 235 IDVYDEDGNSYEMNIYFDPVETTNLSNAVPGYSYWEYLIAMPEDSDASAAFGTSAAGLAG 294 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G ++ + + P G A S VP + + + Sbjct: 295 LGVLTFNAQGALIDQSAFTLDPAGTSAAGGTSLSSWVPATFSDDGLPQFNYLFGSNGAAT 354 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF---------------L 351 ++ +D + VN + + L Sbjct: 355 GGVSTIAYDFGINSDTASWTTGGASNAAAVGTNVNALPGLDATNRDARVTTSYDLPSATL 414 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + N ++ L H+ + + V N+ L ++ Sbjct: 415 YNIQDGYTWGYLNYVSVDEEGILSGHFTNGQTEELYQVAVYKFNSPWGLRR--DGGTNFV 472 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + I+++ V++ E S +I ++ Y + K+I D M Sbjct: 473 ATEASGTAMVGTAGDRGRGIINQNSLEESNVDMSTEFSNMILTQRGYQANTKVITTADSM 532 Query: 472 LQTLLEGVK 480 L TL+ + Sbjct: 533 LNTLISIKR 541 >gi|307637788|gb|ADN80238.1| Flagellar hook-associated protein [Helicobacter pylori 908] gi|325996386|gb|ADZ51791.1| Flagellar hook-associated protein [Helicobacter pylori 2018] gi|325997974|gb|ADZ50182.1| Flagellar hook-associated protein [Helicobacter pylori 2017] Length = 606 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNMNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 54/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + Q + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|217032694|ref|ZP_03438180.1| hypothetical protein HPB128_202g28 [Helicobacter pylori B128] gi|298735878|ref|YP_003728403.1| flagellar hook-associated protein 1 FlgK [Helicobacter pylori B8] gi|216945624|gb|EEC24275.1| hypothetical protein HPB128_202g28 [Helicobacter pylori B128] gi|298355067|emb|CBI65939.1| flagellar hook-associated protein 1 FlgK [Helicobacter pylori B8] Length = 606 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|313681828|ref|YP_004059566.1| flagellar hook-associated protein flgk [Sulfuricurvum kujiense DSM 16994] gi|313154688|gb|ADR33366.1| flagellar hook-associated protein FlgK [Sulfuricurvum kujiense DSM 16994] Length = 615 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 123/405 (30%), Gaps = 35/405 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 S+ + + N A + NI NA+ + Y R+ +T + Sbjct: 3 SIFNALHIGYSGLNAAQIGIDTTGHNISNAETEGYTRQRVVTAAAAPLGVDPGQRGGGTQ 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + L+ + + D Sbjct: 63 VTDITRIFDSFVYARYTTAAQNKEYSDTLKKNLEELSTYF-PEIDKVGIKDDLQSYYDMW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 +S + N S L + + + Q+ + ++ ++ + ++++ + ++ R ++ Sbjct: 122 QSLANNPSNTSLKVALAQQTQTLTQHIQQTRSQISTLQNSLNDQVKVNVDDINRIGQQIA 181 Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD------G 224 +N I + + A+D D+R+ L +S++I V N V S+ G Sbjct: 182 DLNLEIDKAESGGLNHANDLRDKRNQLELSLSKLIDAKVFVGNTKTNNVIDSNIAEKEGG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESN------PIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + ++ + + S SN + V + V GK+ ALL++ Sbjct: 242 YVIQVAGFNLVDGGSFHPIGIDSTSNKNGYNDLYYERQDGVRFPFANTVTGGKLGALLEL 301 Query: 279 R-----------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 R D + N LD A+ LI S + + + + + Sbjct: 302 RGSTIGTNGEFEDGFLQETINNLDSFAQGLIESTNNIYAQTATTSMQSNILNFSDNQSIL 361 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + + T + R S+ L N Sbjct: 362 STDENFKAGTFDLIVYDIDGNEVGRRSISIDNGTLINDTPQTSNS 406 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 52/447 (11%), Positives = 118/447 (26%), Gaps = 17/447 (3%) Query: 50 VTVVTQRSENKNMFDKVL---HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V V + + D L A S + L+ E+ + Sbjct: 168 VNVDDINRIGQQIADLNLEIDKAESGGLNHANDLRDKRNQLELSLSKLIDAKVFVGNTKT 227 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-AREVQKIRADADKEIELEISNLRR 165 + ++ ++ + + + + + D E + + Sbjct: 228 NNVIDSNIAEKEGGYVIQVAGFNLVDGGSFHPIGIDSTSNKNGYNDLYYERQDGVRFPFA 287 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG---ISTIVRNNNDMVVYTS 222 + ++ + ++ +F D + I + + Sbjct: 288 NTVTGGKLGALLELRGSTIGTNGEFEDGFLQETINNLDSFAQGLIESTNNIYAQTATTSM 347 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 L + + I N T + IDG V S I Q +S+ Sbjct: 348 QSNILNFSDNQSILSTDENFKAGTFDLIVYDIDGNEVGRRSISIDNGTLINDTPQTSNSI 407 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V D+ + + + + I I + Sbjct: 408 VGQINISQDDNNDNNSLNDIDDMLVGTFNNQQNIFQINIKAAFEAQGYSFAIEDHGTNFA 467 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------ 396 F + S ++++ + N+ + + Sbjct: 468 GVTGVNRFFDGNDAKSIALNGDLQHDMSKIKGFKSPANGDNQTALDMVQQQFASVTFGIG 527 Query: 397 ----NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 T+ Y N + + + + + FN I + + V++ EE++ LI Sbjct: 528 RSKSTDTIYGYFDNLVTRVGTRTNSAIVSNDSITAQFNSIKQEQDSISKVSIDEEMANLI 587 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + SY + K+I D+M+ TLL Sbjct: 588 RYQTSYGAAAKVITTIDQMMTTLLGIK 614 >gi|285018203|ref|YP_003375914.1| flagellar hook-associated protein 1 (hap1) [Xanthomonas albilineans GPE PC73] gi|283473421|emb|CBA15926.1| probable flagellar hook-associated protein 1 (hap1) [Xanthomonas albilineans] Length = 624 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 122/404 (30%), Gaps = 16/404 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 +V + + ++ N+ NA+ Y R+ + + Sbjct: 2 SVMSTGTGALLAFQRALQTVSHNVANANTNGYSRQRASFATNVPNQFGNYYVGNGTHISD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L + + + +D S D+ S Sbjct: 62 ISRVADQLAISRLFDSTGEAARLKQLSDMSSRVDSVFSD--KATGIAGPWSNFFDATSSL 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + + ++D+ +V F ++ + + + + + +E+ +N Sbjct: 120 SSSAPTTANRQNLLDSGNALVTRFKQLNGQIDSLNNEVNGGLVSGTTEANDLATEIAKIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + + + D LD RD L+ ++ G S + ++ M VYT+ G + Sbjct: 180 GQI--GSNATDASPDLLDHRDQLISQLVSYTGGSVVQQDGGMMNVYTAGGQAMVVGTTAS 237 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + Y + G S+ S GKI L+ R SV+ +L +A Sbjct: 238 VLVTTQDPYQPQRLQIALKTPGG--STPLSSQALGGKIGGYLEFRSSVLDPTTAELGRIA 295 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L S++++ + G + + + ++ Sbjct: 296 TGLASSYNQQHKAGMDLYGQMGGNFFNLPPPTVDGNSANTGNAAFTVNVSDVSKLDGQNL 355 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 W+ + + F+ + V+ + Sbjct: 356 LLSYNGSTWSASRADTGASVAMTGSGTSADPFVVNGVSLQVSGT 399 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 30/429 (6%), Positives = 115/429 (26%), Gaps = 8/429 (1%) Query: 59 NKNMFDKVLH-AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + +++ S + Q + + + + + Sbjct: 197 RDQLISQLVSYTGGSVVQQDGGMMNVYTAGGQAMVVGTTASVLVTTQDPYQPQRLQIALK 256 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + ++ + + A+ + S+ + + + Sbjct: 257 TPGGSTPLSSQALGGKIGGYLEFRSSVLDPTTAELGRIATGLASSYNQQHKAGMDLYGQM 316 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + + +S + N + S + + Sbjct: 317 GGNFFNLPPPTVDGNSANTGNAAFTVNVSDVSKLDGQNLLLSYNGSTWSASRADTGASVA 376 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + N + + ++ + + A+ + ++ + + Sbjct: 377 MTGSGTSADPFVVNGVSLQVSGTAAAGDKFLLQPTANAINNLSVAITDPSRIAAATPIKA 436 Query: 297 LIGSFSEKDP-----IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ A ++ N L ++ + + + Sbjct: 437 TVSLSNQGTGIVSKVQAVDATNANLLTPSNIAFVDATHYTIDGTGPFAYTAGQTISANGW 496 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + ++ + ++ + + D A +TL + Sbjct: 497 SLTLDGKPS-SGDSFAVSPTGPGSSDNGNAQLLSHLDDAKALNGGTITLNGAVSGLSTTI 555 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V+ ++ ++ + GVNL EE + +++++Q+Y ++ +I D M Sbjct: 556 GSAARQAQYSSDAQNVIQSNAQDARDSLSGVNLDEEAANMLQLQQAYEAASHIISTADTM 615 Query: 472 LQTLLEGVK 480 Q++L ++ Sbjct: 616 FQSILSAIR 624 >gi|315125984|ref|YP_004067987.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] gi|315014498|gb|ADT67836.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] Length = 442 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 57/480 (11%), Positives = 124/480 (25%), Gaps = 43/480 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MS+ FN + + NI N+ Y + N Sbjct: 1 MSM---FNIGLSGLKSTQAGLEVTSNNIANSGTAGYKNNTAEFAAVYNGSQRGGVKVANV 57 Query: 60 --KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + +A+ Q F A+ E + + + + N Sbjct: 58 KEDFVTGGEIVRTGNALDIAIDGQGFFAISEN-------GRTAYTQAGQFQLDNDLNVVN 110 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + L + + + + ++ +A +N+ N + Sbjct: 111 ANGGKLQGFGVSQVDG--GDPTIVPGVLTDLKIEASNIEAQASTNIN------FNGNLSS 162 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + A D +D S+ + + N++ M Y T Sbjct: 163 SSDVIAYPTAPAVFDPKDGSQYNFSQSTEVFDSLGNSHVMTQYF--NHTGSNEWQAMFFL 220 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + G ++ G I L D + F L + + Sbjct: 221 DGKPLTQGQLSALGATTGTQAIDDGAGGSINAGTI-TLNFDTDGQMVPFSGDLTAVDLEV 279 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 P + I+ Q+ S+ S + + Sbjct: 280 -----------------PITSTPGNAEITSGAAALNIALKFDGTTQFGSSFSVNENDANG 322 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + +K +A L + + W + S Sbjct: 323 YTSGAFSGVKVEDDGRVFATFTNGESKLQGQVVLASFANVDGLEQGSNTV--WYQTEESG 380 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + V++ E+L L+ +Q+Y + K I D+M+Q L Sbjct: 381 SALYGEPESGSLGKLLSGSFMGSNVDISEQLVGLMSFQQNYQANAKTISSADEMMQILFS 440 >gi|238916755|ref|YP_002930272.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] gi|238872115|gb|ACR71825.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] Length = 464 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 123/478 (25%), Gaps = 37/478 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + + + TQ + N Sbjct: 24 MMRSMYSAVSGLKAHQTRMDVIGNNIANVNTVAFKSQSMTFSEVFYQ---TTQTASGPNA 80 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ IG + S A + +N+ I + + + N Sbjct: 81 ESGKGGTNAKQIGLGSSVGSISTSISTEGASERTDNAFDLKIGGSAFFIVNSAGNTFFTR 140 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G +D + +V + A + + K ++ +S L E + Sbjct: 141 AGNFKVDESGALVTS--AGANVMGWQVDETGKAVKDVVSKLYVNSPEFAYTSPQRTSAVN 198 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + I+ + + N+ V + + ++ Sbjct: 199 FTGNINA------SSKDTITTTLNFYDSLGNSFQATVNLDYAGVQGDNTQYTMTCVGVSK 252 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ + ++ G A L D+ + +D + Sbjct: 253 NGNPTDLTFTASGPLSFNTLTGLADQSNANIQLTFSNDATLAQTNENIDIRTIGESETSP 312 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + + G Sbjct: 313 VLTLSGSGLTMYADKTSIKGNL-------------------------GIDEVGKGKAVGK 347 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ Y + KN VA + L + N + S + Sbjct: 348 MTSVGIDNSGYIVASYSNGDTKNIGQIAVATFSNPEGLQKEGENLYSATLNSGS-FDGIG 406 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS V+L E + +I ++ Y ++++I +D +L+ L+ + Sbjct: 407 EDVTTSDGSISSGVLEMSNVDLSSEFTNMITTQRGYQANSRIITVSDTLLEELINLKR 464 >gi|289666047|ref|ZP_06487628.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 407 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 39/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFDPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + AL + ++ Sbjct: 208 KTANPNEWQVHNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + QY + Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVSGSTQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APNTSDLGQVESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|325918877|ref|ZP_08180954.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] gi|325534914|gb|EGD06833.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] Length = 407 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 42/476 (8%), Positives = 105/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDSNGYVINPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + A + ++ S + + Sbjct: 122 LQVFAPNPSGNGFD-----AGRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFSPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + AL + V+ Sbjct: 208 KTANPNEWQVHNYVDGTAVGAPTTLQFSDTGALTTPANGVIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + QY + Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVSGATQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|91792670|ref|YP_562321.1| flagellar hook-associated protein [Shewanella denitrificans OS217] gi|91714672|gb|ABE54598.1| Flagellar hook-associated protein [Shewanella denitrificans OS217] Length = 639 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 53/421 (12%), Positives = 133/421 (31%), Gaps = 19/421 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M++ + N A+ + Q NI NA+ + Y R+ + Sbjct: 1 MTI-NLLNIARTGVLASQAQLGVTSNNIANANTEGYHRQVAQQGTTDPQMLGGNYYGTGT 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + + L + +++ + E+ ++ L S Sbjct: 60 YVSDVKRIYNDYAARELRI--GQTAKGEAQATYDKVSELDQLYSKVGKIVPESLNGLFAS 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++S + S+ + T +++AE++ ++ N + + +I + + E+ Sbjct: 118 MDSVANTPSDIGIRGTALNSAEQLAKSMNQMQTHLDGQIKQTNSQITAITNRISDISKEI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + S LD++D L+Q++SE ++ I + + L Sbjct: 178 GTINLELMK---SGEKDSQLLDRQDQLIQELSEYAQVNVIPLSTGAKSIMLGGSVMLVSG 234 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + ++ + S GK+ +L ++ + +L Sbjct: 235 EVSMKMGTTVGDPFPNEPRLTTTVGSQSLNVDPSSI--GGKLASLYNFVENTLVPASQEL 292 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-SETICVNPQYRSNPS 349 ++A + +F++ + G I I D + T N + R+N Sbjct: 293 GQLALGIADTFNQAQRDGFDLTGQVGGRIFTDINDASMSAGRVGEFSTNTGNAKLRANIE 352 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + D + N + G + ++ + G Sbjct: 353 SVSALTGSNYELKYTAPATYELTDEKTGQVQALTLNVGAGRLEGGDGFHIYIDSGAFANG 412 Query: 410 W 410 Sbjct: 413 D 413 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/385 (10%), Positives = 102/385 (26%), Gaps = 11/385 (2%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 +S ++ L + +E+ + LG+ + A+ Q ++ + Sbjct: 266 DPSSIGGKLASLYNFVENTLV-PASQELGQLALGIADTFNQAQRDGFDLTGQVGGRIFTD 324 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 I + R N A+ L ++ Sbjct: 325 INDASMSAGRVGE--FSTNTGNAKLRANIESVSALTGSNYELKYTAPATYELTDEKTGQV 382 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + L I + + I + + + + A Sbjct: 383 QALTLNVGAGRLEGGDGFHIYIDSGAF--ANGDRFEIRPNAGAAAGLKTVMTDSKGLAAA 440 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + N +M V S + + G++ Sbjct: 441 SANITADAANSGNTQVKMLSVSNRSAANFPVTGQELTFEINTAASTFEAFDATGASLGVT 500 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + ++ + + +F +++ G ++ + + Sbjct: 501 PYVAPTITAFGFSFEVKSTAAATDRFTFDLSFAPGDNT------NAVAMGKLAETKLMNG 554 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + TL + + + + + V+ + + GVNL EE + L+K + Sbjct: 555 GSSTLNDVFEQTKLSIGGKTKSAAVALGSADAVYQQAYDRVQSESGVNLDEEAANLLKFQ 614 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 Q+Y S +++ ++ TL V+ Sbjct: 615 QAYQASARIMTTAQQIFDTLFNSVR 639 >gi|254779670|ref|YP_003057776.1| flagellar hook-associated protein FlgK [Helicobacter pylori B38] gi|254001582|emb|CAX29629.1| Flagellar hook-associated protein 1 (HAP 1) (FlgK) [Helicobacter pylori B38] Length = 606 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|51894131|ref|YP_076822.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863] gi|51857820|dbj|BAD41978.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863] Length = 418 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 46/475 (9%), Positives = 111/475 (23%), Gaps = 59/475 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + + + I NI N + + T F++ Sbjct: 3 SLYSGVSGIRSHQTRMDVIGNNIANVNTTGFKASRVTFTDV----------------FNQ 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + S+ Q++ + D+ ++ + + + Sbjct: 47 TLSSGSALTNPQQIGLGVAVGSTDLITDEGA---FQMTGRAFDLAISGAGLFVLKGANDE 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + A + + + + + T+ + I T S Sbjct: 104 ILYSRAGMFDW---NPDGILINPALGMKVQGWMAVDGVIGRTDRATMQDIQIVRGTVSLP 160 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + + L E TI+ +L +P + F K + T Sbjct: 161 QATTKVTFKGNLDAAAEEDSTYETIINA----------YDSLGRDIPITLRFTKGDGNTW 210 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + +G + D Sbjct: 211 TVQYWDPETEGWSEEHTLDFGSDGRILGPQGPNDDD-------------------PRLWT 251 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + + R GS+ ++ + Sbjct: 252 ITITDPNDQADDLEITLDFRKITQAYDASGSGGTARSTVELDTRDGRPMGSLEAVYVNEL 311 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + G + + F+ +AG+ + E S + Sbjct: 312 GEIIGRYTNGDSQLLAQIALAHFNNMAGLIKEGN--------STFAESPASGVPQIGTAG 363 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L + + +I ++ Y S +++ D MLQ ++ + Sbjct: 364 TGGRGTLVPGNLEGSNVDLAGQFTEMILTQRGYQASARVVSTADDMLQEIINLKR 418 >gi|238758110|ref|ZP_04619290.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] gi|238703648|gb|EEP96185.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] Length = 428 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 109/476 (22%), Gaps = 53/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTPTTTNRRLDLAISQNGFFRMQD------SSGGVYFARNGQFKLDENRNIVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ+ I ++ + S V N Sbjct: 116 LTGYPATGTPP----------TVQQGANPVPLSIPQDMITAKATTSGNMVANLT------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S I+ + T F+++ + Sbjct: 160 -------------------STHKVITDAFDPQKPDTYSFVNNMTTFDSLGNRHDINVYFV 200 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + +K + + D P + M G+ Sbjct: 201 KTAEDSTGGNTW-------TVYTKDSSATLKDVTKPYDPTDPAAASARGTMVFDTNGALK 253 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P + Q S + Sbjct: 254 SVTPTGSTTSTTDFNMTIPMGVVNGAPAQTFDLNVAGSKQQNTGTDSITAQNQTGYAAGE 313 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + + L N W E S + L Sbjct: 314 FTGFQVNKDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLASQGDNV--WKETQSSGNPILG 371 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 372 TAGGGGFGSLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 427 >gi|15612112|ref|NP_223764.1| flagellar hook-associated protein FlgK [Helicobacter pylori J99] gi|4155652|gb|AAD06640.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori J99] Length = 606 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + Q + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|15645733|ref|NP_207910.1| flagellar hook-associated protein FlgK [Helicobacter pylori 26695] gi|2314271|gb|AAD08163.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Helicobacter pylori 26695] Length = 606 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 60/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +G++ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGRVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD A+ LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGRVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ F+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|121601827|ref|YP_989383.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] gi|120614004|gb|ABM44605.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] Length = 404 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 49/490 (10%), Positives = 119/490 (24%), Gaps = 96/490 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M + + + + + N ++ + I N+ NA Y R + + P V Sbjct: 1 MGIYGMMHTSVSGMNAQGKRLSGIAENVANAGTVGYKRTNVQFSNYVTPSGDYAYVPGGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + A F +++ N Sbjct: 61 KSHV---GHDISIYGPARATGRPGDAMINGNGFFRVED------ENGNEFLTRAGSFSRD 111 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + Y +N S L + +Q D + + + Sbjct: 112 KDGYLRNSSGHYLLN--------------DEGQRIQIRGGPTDLFGPEVTTGIDFKANFD 157 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + D D + + VY S G + Sbjct: 158 AS-------AESLGEGVIDPEDPK---------------SYNQKKSVTVYDSQGKKVQVD 195 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + N + Q L Sbjct: 196 FYMRKTADNKWTVDAYHGDNKV---------------------GTADFNFDKEGNLQAPL 234 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + L G+ + I G D+ + Q N Sbjct: 235 PDFTLTLPE------NDGGDPPGTFQVAINLGGLGEDSLVTQK------------GNSYA 276 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + ++ ++ Y + + + +A + + +L + + Sbjct: 277 FEAEANGMEVGSFDGFTFGKNGEVEVKYTNQKTRVISYVGLATVTSPESLTVLSGTV--F 334 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 R+ + + VF ++ Y V + EEL+ +I+ +++Y ++K+ + Sbjct: 335 QTNTRTGAQMVGRPGDGVFGSLTAGYLEDSNVEMSEELTDMIESQRNYTANSKVFQTGSE 394 Query: 471 MLQTLLEGVK 480 ++ ++ + Sbjct: 395 LMDVIVNLKR 404 >gi|114046844|ref|YP_737394.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7] gi|113888286|gb|ABI42337.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7] Length = 641 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 49/439 (11%), Positives = 117/439 (26%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ T V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQVFSQ--IGKIVPQSLNDLFSGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLTQTNDQITGMTKRINEISTELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I N + L Sbjct: 182 LELMKSP---NQDAMLLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGAIMLVSGEVPM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 I V + G++ AL + R+ + +LD++A Sbjct: 239 SVSTATGDPFPNELQLMSSIGSQSVRVDPN--KLGGQLGALFEYREQTLVPAGLELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D + + + + Sbjct: 297 LGVADNFNKLQAQGFDLNGQVGTDIFKDINDPLMSIGRVAGFSGN---------TGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + Sbjct: 348 GVNIDDTSALSGGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I Sbjct: 408 ASGDRFAIRPTAGAANGIE 426 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 36/363 (9%), Positives = 96/363 (26%), Gaps = 8/363 (2%) Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + L + + A+ + ++ D K+I + ++ R +A Sbjct: 287 PAGLELDQLALGVADNFNKLQAQGFDLNGQVGTDIFKDINDPLMSIGRVAGFSGNTGNAT 346 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A ++S + +R+ + + Sbjct: 347 LGVNIDDTSALS------GGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSI 400 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + I + + I A N ++ ++ Sbjct: 401 DIKAGAMASGDRFAIRPTAGAANGIEVVMTDPKGIAAAAPKITPDAANSGNTQVKVTQIT 460 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 S + + + + + P S F + S Sbjct: 461 NRSAANFPTTGSELTIQLDTTAVPPTFEAFDVNGASLGAPVAYTPPSISAFGFTFEVDSS 520 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + N ++ + + TL + + + Sbjct: 521 AAAAGDKFTFDLSFAEGDN--TNALAMAKLSETKVMNGGKSTLADVFEQTKQDIGSQTKA 578 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 579 AEVRVGAADAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMSTAQQIFDTLLT 638 Query: 478 GVK 480 V+ Sbjct: 639 SVR 641 >gi|108563482|ref|YP_627798.1| flagellar hook-associated protein FlgK [Helicobacter pylori HPAG1] gi|107837255|gb|ABF85124.1| flagellar hook-associated protein 1 [Helicobacter pylori HPAG1] Length = 606 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 61/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD A+ LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDESFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/400 (13%), Positives = 125/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + +I +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQIYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDESFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|294635610|ref|ZP_06714087.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] gi|291091062|gb|EFE23623.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] Length = 411 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 116/476 (24%), Gaps = 70/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS Q I NI N+ + V T S N++ Sbjct: 2 GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + Q F +++ + + + + N Sbjct: 62 KDGTTTTTNRGLDVAISGQGFFRMQD------PNGSVYYTRNGQFSKDAKGFLTNAQGMY 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ +I + + V+N K Sbjct: 116 LTGYPASGTPP----------TIQQGADPVPIQIPTGLMPAKSTTQGSMVLNLNSANKAI 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ D S S +N ++ + TT + ++ Sbjct: 166 DSKTSPFDPNKVDTYTYATSMTTYDSLGNVHNMNLYFVKGESTTGAAPETAWHVYAVDSA 225 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + N + ++ + + Sbjct: 226 APATDKPQDVGSLTFDANGN-----------------------LIKGGKQTINMVASNGA 262 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q K Sbjct: 263 PAQTFTLDFTGT--------------------------RQQNTGKDGVTSKTQDGYKAGE 296 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L+ N W E +S + Sbjct: 297 LTGYQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNV--WSESAKSGQPIVG 354 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ V+L ++L +I +++Y + + I D++LQTL+ Sbjct: 355 TSGTSGLGNLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 410 >gi|208435016|ref|YP_002266682.1| flagellar hook-associated protein 1 [Helicobacter pylori G27] gi|208432945|gb|ACI27816.1| flagellar hook-associated protein 1 [Helicobacter pylori G27] Length = 606 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 61/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + S D S + +S Sbjct: 63 IEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|113969612|ref|YP_733405.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4] gi|113884296|gb|ABI38348.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4] Length = 641 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 49/439 (11%), Positives = 117/439 (26%), Gaps = 26/439 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 + N A+ + Q NI NA+ Y R+ T V Sbjct: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSD 63 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + L + + + + + + ++ L L S Sbjct: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQVFSQ--IGKIVPQSLNDLFSGLNSL 121 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + ++ + + +++A+++ + N + + +I + +EL +N Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLTQTNDQITGMTKRINEISTELANLN 181 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + LD++D L+Q++S+ ++ I N + L Sbjct: 182 LELMKSP---NQDAMLLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGAIMLVSGEVPM 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 I V + G++ AL + R+ + +LD++A Sbjct: 239 SISTATGDPFPNELQLMSTIGSQSVRVDPT--KLGGQLGALFEYREQTLVPAGLELDQLA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + +F++ + G I I D + + + + Sbjct: 297 LGVADNFNKLQAEGFDLNGQVGADIFKDINDPLMSIGRVAGFSGN---------TGNATL 347 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G + + +N + Sbjct: 348 GVNIDDTSALSGGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSIDIKAGAM 407 Query: 415 RSDSHDLHMKSQVVFNHIS 433 S + N I Sbjct: 408 ASGDRFAIRPTAGAANGIE 426 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 37/363 (10%), Positives = 96/363 (26%), Gaps = 8/363 (2%) Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + L + + A+ + ++ AD K+I + ++ R +A Sbjct: 287 PAGLELDQLALGVADNFNKLQAEGFDLNGQVGADIFKDINDPLMSIGRVAGFSGNTGNAT 346 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A ++S + +R+ + + Sbjct: 347 LGVNIDDTSALS------GGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSI 400 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + I + + I A N ++ ++ Sbjct: 401 DIKAGAMASGDRFAIRPTAGAANGIEVVMTDPKGIAAAAPKITPDAANSGNTQVKVTQIT 460 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 S + + + + P S F + S Sbjct: 461 NRSAANFPTTGSELTIQLNTTAVPPTFEAFDANGTSLGAPAAYTPPSISAFGFTFEVDSS 520 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + N ++ + + TL + + + Sbjct: 521 AAAAGDKFTFDLSFSEGDN--TNALAMAKLSETKVMNGGKSTLADVFEQTKQDIGSQTKA 578 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ + GVNL EE + L++ +Q+Y S +++ ++ TLL Sbjct: 579 AEVRVGAADAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMSTAQQIFDTLLT 638 Query: 478 GVK 480 V+ Sbjct: 639 SVR 641 >gi|317014505|gb|ADU81941.1| flagellar hook-associated protein FlgK [Helicobacter pylori Gambia94/24] Length = 606 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + Q + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|194365680|ref|YP_002028290.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia R551-3] gi|194348484|gb|ACF51607.1| flagellar basal body FlaE domain protein [Stenotrophomonas maltophilia R551-3] Length = 407 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ + N+ N + + ++ + Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 66 VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A G Q E + + Y N Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDPSGYVINPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ Sbjct: 122 LQVFAPNADGTNFDAGRMVDLQLL------------------------------------ 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D ++ SE+ T+ N V T D T +S Sbjct: 146 ----------TTDSAPKQTSEVKVGFTLPANAKQPTVTTFDPTDSNSYNHSSGGITVYDS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ F+ G + G+ + Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAG-----------------------APTPV 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + G ++ + + QY + Sbjct: 233 TFDNSGKLTAPANGKVSLGTFTPTTGAGVLNMTLDVSGSTQYGEKFALRNTQQDGYAAGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K + N L N W++ S + Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 M I V+L E+L +I ++++ + ++I D++ QT++ Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406 >gi|84514827|ref|ZP_01002190.1| FlgK flagellar hook-associated protein 1 [Loktanella vestfoldensis SKA53] gi|84510986|gb|EAQ07440.1| FlgK flagellar hook-associated protein 1 [Loktanella vestfoldensis SKA53] Length = 1421 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 125/410 (30%), Gaps = 22/410 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + ++ + ++ + +NI NA+ + Y RRD + + Sbjct: 1 MASLLDIGRSAVQAQREALNVTGQNIVNANTEGYRRRDATLTEVYGIQSELTGLSSQTGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + R + + ++ E + + ++ Sbjct: 61 GVKLGEIRRAYDGFLTESKRSATARFEASDAFVGKLEQLENLIL--PNDGDLGVVMTAFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 D+L + + + + ++ E V FNT+A + + +EI +E+ ++ R L Sbjct: 119 DNLTQVAASPGDPAPREAALEMGETVANAFNTTAGMLTSLMNGTAEEIGVELVDVNRTLQ 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L ++N ++ H+ LD+RD LL ++E I ++ + D + G + Sbjct: 179 SLGIINGQLRSSNIGSAPPHNLLDERDRLLDSLAEKIPVNIKIGERLDAELRL--GASDS 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + K S + +F G S S + G ++ L+ + Sbjct: 237 GPLILTGEDAKKLSVVEGESGSIMFRVG---SGQIVSQLETGGLRGLVDAH-GTNRRALS 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +LD +AR +++ + + G + + + Sbjct: 293 ELDALARDFSQKLNDQHAQGIDLDGQLGRELFAVVDFSVTAGASNQGDAQATIRLVPGLA 352 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 L + + S + V G + Sbjct: 353 DRLGALQMTFDGRRGQWQLTDDTGARLGAGRASLEIDGAVILVEGTPKDG 402 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 45/415 (10%), Positives = 116/415 (27%), Gaps = 17/415 (4%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNS-----PTHYISKLRDSLESYSKNLSEDIL 123 S+ + + ++A D + K + + Sbjct: 1014 GASARFVLAGAEYTLTRVDNRLTALDFEMTGPEAGRILPRVIKTNEGFSLSLIVADGQLA 1073 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 G + + F S ++ + + + + + T Sbjct: 1074 GAGPRPVTDSGAEAFGLSDTQLTQSLQGRSFDATDGTYQINVTVGGVAK--------TVI 1125 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 L Q D ++S + I+ + + ++ G + +V K+ + Sbjct: 1126 LQAKDGKLTQSDPKPDELS--VDITGGDDEPTSITLTSALGLAVTPSVDAAALGFKLANA 1183 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 ++ E+ + + A L + D + + + + Sbjct: 1184 ELSVENGRLLARSTDETVVDIKARGTSAAGIYLHLDDLPDEELIVVMGSDGARRLSAEFK 1243 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN--PSFLRDGGSVSKKF 361 P F + + D ++ + S+ F G ++ Sbjct: 1244 IGEPLTAKTRGPEQFRIEMMDDASGRVELFDMVSGASIATRMSSGLARFNVTGQTLELAG 1303 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + + DS N + + + T + R+ + + Sbjct: 1304 FADTGDSFQFATGQRSSGDSRNLDELIKLGEQGSGRRTFQDNFRSIAAGVGSSLEAGRLT 1363 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 ++ V + S S GVNL EE + L+ +Q+Y + +++ ++ TL+ Sbjct: 1364 RASNEAVRDAAVASESELSGVNLDEEAAKLMAQQQAYQAAARILQTARELFDTLI 1418 >gi|21231397|ref|NP_637314.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768550|ref|YP_243312.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. 8004] gi|188991641|ref|YP_001903651.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. B100] gi|21113063|gb|AAM41238.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573882|gb|AAY49292.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733401|emb|CAP51602.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 407 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E A + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + S ++ Sbjct: 122 LQVFAPNPSGNGFDVGRLSDLQLL------------------------------------ 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D + S + T+ N + V + +S Sbjct: 146 ----------TTDSPPKSTSTVNLAFTLPGNASAPTVTPFNPADDKTYSHSTGGINVYDS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ F+ + Q G + Sbjct: 196 LGVSHVQTSYFVKTANPNEWQVHNYVDGSAVG-----------------------APTTL 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + G+ D + + + QY + Sbjct: 233 QFSDTGSLTTPANGIVAMDPFTPSTGAGVLSMQLNVSGSTQYGEAFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K + L N W E S + + Sbjct: 293 LNEISIDTSGVVFARYSNGADKALGQVALNSFVNPQGLQSQGNNM--WAESYTSGAARVG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|301644994|ref|ZP_07244960.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1] gi|301076723|gb|EFK91529.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1] Length = 293 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 101/289 (34%), Gaps = 14/289 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 +S + + + G + +L R Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 287 >gi|317121822|ref|YP_004101825.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591802|gb|ADU51098.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 406 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 42/478 (8%), Positives = 107/478 (22%), Gaps = 72/478 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + I NI N + + R K + Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGFKSS----------------RVTFKEL 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F++ L ++ G R + ++ + + N Sbjct: 45 FNQTLRGAAAPAGPTR------------GGTNPIQIGLGTALAGIDVIHQ--PGNPQVTG 90 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + + D + + N + Sbjct: 91 VATDLAIQGDGFFVLQDAAGGYAYTRAGDFRLDAAGYLVNADGLRVLGWQAQGGVLPARD 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + V + Sbjct: 151 A-------------------------VNLGPIRVPVDMFVPAQASSRVTWSSNLDATTPT 185 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + ++ + + G + Q D+ P + G + Sbjct: 186 NTPLTRAVDVYDSLGNAHTLIFTFTRTGSNQWSWQAEDAANPGTSLGQGTLTFGNSGLLT 245 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + QY + PS L Sbjct: 246 AGNTGTV-------------SFTPTGAATINLQVDFSGLTQYAA-PSTLEGTADGYPAGE 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + + + +A L R+ + E N S + Sbjct: 292 LTSFAIDTSGTITGTFSNGTTQPIAQVALASFANPAGL---LRDGNLYWESNNSGVARIG 348 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ V+L E +I ++ + ++++I +D+MLQ L+ + Sbjct: 349 VAGTGGRGALTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVNLKR 406 >gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille] gi|151280254|gb|ABR88664.1| FlgE flagellar hook protein [Janthinobacterium sp. Marseille] Length = 416 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 58/473 (12%), Positives = 126/473 (26%), Gaps = 59/473 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ +I N+ N+ + + + Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYAS---------------- 45 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S Q + + ++ S + ++ ++ D S G+ Sbjct: 46 --TLSGSGAAQIGIGVQVARVAQLFSQGNIAVSNNPLDMAINGDGFFRMSS-GGSITYGR 102 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + N S + ADA+ ++ EL + + +K+ Sbjct: 103 NGQFELTKEGYIQNASGARLTGYMADANGVVQ------NGAPVELVINKADMGPAATTKY 156 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D LD R +L + + ++ + VY S G + S Sbjct: 157 DVKLTLDSRKDVLDPLLFNPDDAATFSDSTSVPVYDSLGNSHILRTFYVKTAGGEWSVFA 216 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T++ PI V ++N + + Sbjct: 217 TNDGVPIGYTLPVTATNPPVPLG--------------------------------VMDFG 244 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P +A I+ + Q+ ++ + Sbjct: 245 TGGALVSTTPSPMVAAMAVTTGAATPFNITLNVAGTQQFAQAFGVSKNLPDGYRPGTLTG 304 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++A ++ Y + ++ L N W+E S Sbjct: 305 FDVASDGSIMGRYSNGEVNVLGQVILSSFANPNGLQNIGDNQ--WVETAESGVPLTSTPG 362 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L EL +I ++ Y + + I D+++QTL+ Sbjct: 363 SSGLGVVQSARIEESNVDLTAELVNMITAQRVYQANAQTIKTQDQIMQTLVNL 415 >gi|317152080|ref|YP_004120128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316942331|gb|ADU61382.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 535 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 58/540 (10%), Positives = 136/540 (25%), Gaps = 65/540 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS + ++ + N+ N + + D + Sbjct: 1 MS-FSSLYVGATGVVAHGERMQVVANNLANVSTIGFKKADALFGDLMSSQLGYGGGQFES 59 Query: 44 -----TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + V++ R+ + L ++ F +++ + Sbjct: 60 GSSYASQMGQGVSMSAIRTV---FAEGGLENTTTTTDLAITGNGFFGVRDTTAGGTM-GA 115 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S R + ++Y + + L +D VV + + + + + L Sbjct: 116 SHYTRAGSFRFNNDAYLVDPHDFRLQGYAVDRETGVVATQVSDVQLPYEDVVIDGQPVRL 175 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 S R V N + F + + ++ + Sbjct: 176 VRSQPRATTDVEMVTNLDAVATEQYSSATNPFFAMLEAYNGSSGSKPFGENLPAYSSALT 235 Query: 219 VYTSDG----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 +Y +DG T++ + E S G++ Sbjct: 236 IYDADGNEHEMTVYFDPVNASSLSNAAPGYSYWEYLVALPGSSDGSGAYGTSAAGLAGMG 295 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 +L S + Q+ + S P N + P + G Q + Sbjct: 296 VLTFNGSGQLVGQSAYSLTGGADGKNLSNWAPATFNLDGEPQVSFTFGSNGAAIGTEQLV 355 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVK----------NLAGYPDLINHYCDSFNK 384 S + + S V V+ + Y Sbjct: 356 SYDFGLTSTTSTWLSGAATAAGVGLNVGNLVQMANEARDARITTSYDQSSFTAYQIQDGF 415 Query: 385 NFIFDPVAGINTNVTLLEYARNS------------------------IGWLEKNRSDSHD 420 + + ++ + L Y N ++ + S + Sbjct: 416 TWGYLLNTSVDGDGFLSGYFSNGQTEEFYQVANYRFASEWGLRRDGGNNFVATDASGAAM 475 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ V++ EE + +I ++ Y + K+I +D +L TL+ + Sbjct: 476 DGKALVGGRGSFVQNTLEMSNVDMAEEFASMIITQRGYQANTKVITTSDSLLNTLISVKR 535 >gi|240145383|ref|ZP_04743984.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] gi|257202504|gb|EEV00789.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] Length = 587 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 46/392 (11%), Positives = 103/392 (26%), Gaps = 31/392 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47 ++ N+ N D YVR+ + S Sbjct: 5 FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 VT+ D++ SS + + + ++ Sbjct: 65 LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQDALTDF 123 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + + + VI A+ + ++ + + + +I +I + Sbjct: 124 WGSFQELYNYPEDSVYQNLVIQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183 Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ +N I+ A A D RD+ L +++ ++ IS N + V Sbjct: 184 KTISELNLQIQKIEAGNIETAMTLRDARDLALDELASLVDISYKEEVNGVVRVSVEGNEF 243 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID----------GVVVSSNQGSAVPKGKIKALL 276 + E + + + + D + + G+IKAL+ Sbjct: 244 VNENGYYKVEKQTDKATGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 R V +++ L + + + GI N + +E Sbjct: 304 LARGDKVANYKDILGVDGKTYDDTTGM---SVMLRAEAQMDQLFHGIATAINDILCPNTE 360 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 N S + + + Sbjct: 361 ASNYITGLTGNGSVTMTDADGNTYTVTANTKI 392 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 13/238 (5%) Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLI 298 + ++ + +G V ++ + D +L E+ L Sbjct: 357 PNTEASNYITGLTGNGSVTMTDADGNTYTVTANTKILDADKCAVGSDGKLPPQELFTRLG 416 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + +D + Q + VN ++ + L Sbjct: 417 TERYTEVSYTDPASGETKTYYLYNEEDPADTTKQYTMGSTSVNSALITDETLLPHLRQNG 476 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + +Y IG + + Sbjct: 477 DVDQS-----------LMATLAAVWDKESLTVNPNDTKAYSFKDYYAAMIGEVATYGNVY 525 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + +GV+ EEL+++IK + +YN S++ I ++M++ L+ Sbjct: 526 NSTATNLSQTVQSVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 583 >gi|170725955|ref|YP_001759981.1| flagellar hook protein FlgE [Shewanella woodyi ATCC 51908] gi|169811302|gb|ACA85886.1| flagellar basal body FlaE domain protein [Shewanella woodyi ATCC 51908] Length = 453 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 48/484 (9%), Positives = 108/484 (22%), Gaps = 44/484 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + + A + + NI N ++ + N T Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGATT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L ++A+ F + + DH + +Y Sbjct: 62 SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSSLDSQDHT----FTRAGAFKVDSNNYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D T+ V ++ EI + ++ Sbjct: 118 VDSQGNFLQTFGVDKDGNSTSVSLTTTSPVIIPDTAGSPKMTDEIGIQMNLNAGDDTLDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRD 234 D D S + + + + + + Sbjct: 178 -------------AAFDPNDRDTYNNSTAVTLYDSLGEPHIMTTYFVRPPQAAYTGASNW 224 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + F ++ V + + + Sbjct: 225 VAFYAVDGKQVDLAGPAGTYQTDTTGDGNADSSGSATTAGGWKGSVLTYNDTGAYVGSDP 284 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 V+ + Q ++ QY S Sbjct: 285 AVVTTEELGVNGAGVLGPG--------------ADGTQTLAVKYNNPTQYASTFEVTELT 330 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + Y + +A L + W Sbjct: 331 QDGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALARFANEQGLTQVGN--TSWKASL 388 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + F I S V+L EL LI ++++ +++ + + + QT Sbjct: 389 DSGLALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQT 448 Query: 475 LLEG 478 +L+ Sbjct: 449 VLQI 452 >gi|320186970|gb|EFW61683.1| Flagellar hook-associated protein FlgK [Shigella flexneri CDC 796-83] Length = 547 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 50/546 (9%), Positives = 133/546 (24%), Gaps = 70/546 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYISKL 107 + E L A + + + M + + + L Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF- 166 + E + + + +++ + Q ++V + +I + Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180 Query: 167 ------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 S +++ + + + +D I+ G S + + Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + T ++ N N + G++ +Q + + Sbjct: 241 ARQLAAVPSSADPSRTTVAYVDGTAGNIEITEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300 Query: 275 L------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 L D+ ++ ++ + K +A + + Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + Q + N + P + + + D+ Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420 Query: 383 NKNFI------------------------------FDPVAGINTNVTLLEYARNSIGWLE 412 + + + + + + + Sbjct: 421 VNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG 480 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + V +S + GVNL EE L + +Q Y + +++ + + Sbjct: 481 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 540 Query: 473 QTLLEG 478 L+ Sbjct: 541 DALINI 546 >gi|320353949|ref|YP_004195288.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122451|gb|ADW17997.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 423 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 54/491 (10%), Positives = 125/491 (25%), Gaps = 79/491 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M L + A + +SQ NI N+ + T+ + + + Sbjct: 1 MGLSSALFTAISGLQGSSQAMTVTGNNIANSSTVGFKTSSTVFSDLLSANIASSSGNSQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 ++ + + SA F + D + S Sbjct: 61 GRGSQVQTVQTSFSQGGFESTESATDIAIEGSGFF-----IVGDPLSDTSLYTRNGNFSF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y + + + + + + I+ D +I+ Sbjct: 116 DDDGYLVTADGYRVQGSTYNANGVLA------SGNLSDIQVDLVSQIK------------ 157 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A + + D + ++ + ST + ++ T+ +L Sbjct: 158 ------------AKRTENVTLQTNLDSNSEVLNAGVFDSTAPEDTSNYATTTTVYDSLGT 205 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 F K+N T D +S + G + Sbjct: 206 AHLLTCYFTKVNDQTWNWNLTVDGADLTGGTSGVLEIIGSGTL----------------- 248 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 D S G + + + + Q+ S+ + Sbjct: 249 -------------VFDQDGNLSTGSTGTTTSGILTWANGADQTQQLAYVFDTTQFDSDST 295 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 ++A + Y + +A + L + Sbjct: 296 VFSQDQDGYASGEVTDVDIAADGTVSAVYSNGETIPVAMIALATFINSDGLDAVGSSL-- 353 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S + + + V+L E LI ++ +Y+ ++K+I T+ Sbjct: 354 YRETGESGTPTIGYPG-ASQGTLITQALELSNVDLATEFVDLITIQNAYSANSKVITTTN 412 Query: 470 KMLQTLLEGVK 480 +ML L+ ++ Sbjct: 413 EMLDELVNLIR 423 >gi|148554189|ref|YP_001261771.1| flagellar basal body FlaE domain-containing protein [Sphingomonas wittichii RW1] gi|148499379|gb|ABQ67633.1| flagellar basal body FlaE domain protein [Sphingomonas wittichii RW1] Length = 435 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 50/482 (10%), Positives = 106/482 (21%), Gaps = 59/482 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVVTQR 56 F A + + A I NI N + R T S R Sbjct: 2 SFYTALSGLKASQTDLAVISNNIANVGTTGFKRSGTEFGDLVSSSPMQSSGIAGQGTRLR 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L + ++ Q F + A + + Sbjct: 62 GIAQQFTQGGLESSERSLDLAISGQGFF----VTRASNSNGQVSYTRNGAFSVDANRFLV 117 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + S L D V +SAR +Q + I Sbjct: 118 DSSGAYLQALPTDTKGNVTATGLSSARSIQLPLTSGTSKATQTID--------------- 162 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 L + + + Y D T Sbjct: 163 --------------------LSVTFPSAGDVPSTRAIYSTTNPYKFDRTDPNSYNQSTTT 202 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + + S + +I Q + Sbjct: 203 TVYDAAGNAFPMTTYYIRENLPGGSVTDTNWTAHTFIGDTEISYDSSAATQPAPLTL--- 259 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 D + + + + + S + Sbjct: 260 ------TFDSTGAKTAPSGAINLGPLTPAGASAPLEFTLNYSGSTKMSASPFTLTSFDQD 313 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ ++ + + ++ +A + L + + W S Sbjct: 314 GYAAGQLDNVSVGADGLIVATFSNGDSQALGKIILANFSNPEGLRQLGDSK--WGATGLS 371 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + S I V++ EEL LI+ +++++ + K I + M QT++ Sbjct: 372 GEPIIGEASSNGTGQIQSGALEQANVDITEELVALIQAQRNFSANAKTIEAANTMTQTIV 431 Query: 477 EG 478 Sbjct: 432 NL 433 >gi|218887610|ref|YP_002436931.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758564|gb|ACL09463.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 702 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 84/243 (34%), Gaps = 12/243 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 + ++ N Q + NI N + Y R+ Sbjct: 3 GVTSLLNMGQLSLLANQTAIQTTGNNIANVNTVGYSRQAVRFEEYPALDGFPGQIGTGAY 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 +K +S + E + ++ +S+ Sbjct: 63 AAEVYRYFNGFVEKSYLDKASQQSRWDSQYEMLQSVESLF-NESTTPGINAAMSQFFADW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++ S+ + ++ +++ +V+ S ++ ++ D+ ++ E++ + ++ Sbjct: 122 QALSQRPDDKASRDALLSHSDNLVKLLQNSESNLRIMQQQMDQYLKQEVTEANSLIKQIA 181 Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I+ ++A+ +D R++L++++S+ + + + + V T G TL + Sbjct: 182 ELNRQIEMHDDPGKNNANTLIDNRNLLVRQLSQKLDVDVVDNGSGKFTVVTKAGHTLVDG 241 Query: 231 VPR 233 V Sbjct: 242 VNA 244 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 48/448 (10%), Positives = 121/448 (27%), Gaps = 26/448 (5%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 Y + R + + + + + + Sbjct: 278 YTLDVVQSGAVTSGAGAAMYRVSLDGGKTWLKDETGNDRLFAARPEDQKVKVQGLDIYFS 337 Query: 96 YNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 + + + +S Y + L + A+ + + + D Sbjct: 338 GSTQNLEAGDRFTVTPKSGVYWVTPTTSPLNISPQTMADGTDNSRRITGGTIGGFMIFRD 397 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ++ + + + + + + L + + + +S + Sbjct: 398 TQVGRYVDRVNAL--------------------SESLIWEVNRLHSQGAGLDHMSVMSGT 437 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + G+ + S V ++ ++ + +A P + Sbjct: 438 YGVADPSIALGSDSSGLAWLNRLEAGNFSMYVYDANSGAYLSNASGPLDFDTATPGIQN- 496 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + ++ L+ I + + + S + + L L Sbjct: 497 --FDPTVHSLNDVRDALNNTFGTYINADIVDNKLVVRSNSGYKFGVGADSAGLLAGLGLN 554 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 P D ++ + AG D K Sbjct: 555 TYFQGSDASTISVRPDVRSDTNFINAGKVNGGNEANAGDNDTATAIAGLATKEVTISTTF 614 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 ++ TL EY + + + + + + + + E S + GVNL EE++ L+ Sbjct: 615 ERASSQTLSEYYSAIVATVGADTASTKFNAAYTATLAKDLDERQSASSGVNLDEEMASLV 674 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 K + +Y + KL+ D+M+QTLL + Sbjct: 675 KFQHAYKAAAKLVTTADQMMQTLLGLKQ 702 >gi|237731007|ref|ZP_04561488.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906546|gb|EEH92464.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 417 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 104/476 (21%), Gaps = 64/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F + + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRMVD------SNGSVFYSRNGQFKLDENRNIVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ A A K + ++ A Sbjct: 116 LTGYPATGTPPTVQQGANPAPITIPNTLMAAKSTTTASMQVNLNSTDKVPTKTPFNPSDA 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ + D I +N V T E + F+ Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMNIFYVKNKESNTWEVFTQDASTGDAEKSAGFMRFDNNGL 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + S + + + G I Sbjct: 236 FLGISATAAEVPPTAPAVWPKDIKITTGPING---------------------------- 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 268 -------------------------AVPANFSLSFLNSMQQNTGANNIVATNQNGYKPGD 302 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 303 LVSYQINNDGTVVGNYSNEQQQVLGQIVLANFANNEGLASQGDNV--WAATQSSGVALLG 360 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 361 TAGEGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 416 >gi|118588735|ref|ZP_01546143.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] gi|118438721|gb|EAV45354.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] Length = 463 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 54/493 (10%), Positives = 121/493 (24%), Gaps = 43/493 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + N A + ++ +I N+ N+ Y R DT + + + Sbjct: 1 MGIYGAINSAVSGLAAQAKALENISGNVANSQTTGYKRLDTTFSDLVSGGGSKQAQQVSG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM-------------MSADDHYNNSPTHYISKL 107 F ++ + + + + Sbjct: 61 TTFATSRATNTVQGDITSVDVDTYMAINGPGYFVVTKASDVVDGSTTFADETYYTRAGDF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 E Y N S L +D N + +++ A Sbjct: 121 ERDKEGYLINSSGYYLQGFPLDPNTGNAIGDNPTVIQIENQPLAASATTA---------- 170 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 V+ + +D D+ LL ++ + + T+ Sbjct: 171 -----VDYQANLPRVPATNDYDGTDESTALLNATVGAGNVAVANEADFLNSSISGGSITI 225 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + E + T ++ G V + + A D F Sbjct: 226 YNQNGTAMPVEVRYAKTANYDA------GPPVVEDAWTMYIGTGGDATDAWYDVGTIQFD 279 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + L + G+ + + G N ++ Sbjct: 280 DTGE--MTTLTAGAMAGSAVNGSGDGFTISSLTIGGTTAANVEFSFADGSLTQYSDKDGR 337 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 S + + +I Y ++ + P+A L Sbjct: 338 ASSVSLDQDGFPAGELTGVAVDASGRVIASYSNNQQRPVYQIPLATFQAEQDLQRV---- 393 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + I ++ +E S LI +Q+Y+ +++++ Sbjct: 394 ---DGAAFAATAGSGDADLSGGGQILAKKVELSNADIADEFSKLIITQQAYSANSRIVTS 450 Query: 468 TDKMLQTLLEGVK 480 D+ML L V+ Sbjct: 451 ADEMLDDALNMVR 463 >gi|58582195|ref|YP_201211.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624088|ref|YP_451460.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426789|gb|AAW75826.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368028|dbj|BAE69186.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 407 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 38/476 (7%), Positives = 105/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + + A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + AL + ++ Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTTPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + QY + Sbjct: 250 -----------------MAPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTS 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APGTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|332673917|gb|AEE70734.1| flagellar hook-associated protein FlgK [Helicobacter pylori 83] Length = 606 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLMVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ ++ + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLMVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|308184859|ref|YP_003928992.1| flagellar hook-associated protein FlgK [Helicobacter pylori SJM180] gi|308060779|gb|ADO02675.1| flagellar hook-associated protein FlgK [Helicobacter pylori SJM180] Length = 606 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/480 (13%), Positives = 135/480 (28%), Gaps = 35/480 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + N + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSANHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 D N T + S D + + + ++L +E Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVSMKDDGTNFMGALKLNPFFQGDDASNISLNKEY 480 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 54/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ TH ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVIKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E N+ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSANHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDDGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|317009731|gb|ADU80311.1| flagellar hook-associated protein FlgK [Helicobacter pylori India7] Length = 606 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQNMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T+ ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + +I +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|291334320|gb|ADD93981.1| flagellar hook associated protein 1 [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 354 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 121/331 (36%), Gaps = 18/331 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------------MTTISPEN 49 + ++ A++ + A+ +NI N NK+Y RR+ ++ + Sbjct: 1 MSDIYGIAKSGLQAYKEGLATTGQNIANVGNKDYARREAPVSEVKSSNDVLQVSNTAGFG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V D L + +S+ E + S + I +L Sbjct: 61 VRVDGITRAFDQFIDTQLQSAASSFSFSTSQAVVLNQLETV--VRPSEGSVSQKIQELFS 118 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 SL + +++ S+ D ++ +V + T A + +R ++IE I L++ Sbjct: 119 SLNTVAQDPSDLASRHVAADASKALVNSITTVANGISDLRTFVSQDIESNIGQANDILTQ 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L V + + ++S ++ LD+RD LL +SE+I I+ ++N + V GT Sbjct: 179 LANVQNQLLGISSSNRGPNELLDKRDALLNDLSELIDITVDYKSNGILEVN--AGTFGQG 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ IF+ V GKI D + ++ Sbjct: 237 QSLISGVQISKLEVQKVDGTSKIFMRTANGDGLSKIQVQAGKIAG-NLASDLTLVETKSA 295 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 LD+++R L+ F+E + G Sbjct: 296 LDQLSRKLVNEFNEAHTFGVDLNGELGRKFF 326 >gi|221639495|ref|YP_002525757.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] gi|221160276|gb|ACM01256.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] Length = 423 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 N A + + A A+ NI N + + R Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + A + + Q F A + + + + E + Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + + + SA + ++ ++ ++ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDDAMLGR 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ D D T + ++ + G + Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + + + G + Q L Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + + T + + G Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +G + Y + L + + G+ Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F I V+L EEL LI +++Y S K + ++ ++QT+ Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418 Query: 476 LEG 478 + Sbjct: 419 MNI 421 >gi|114777402|ref|ZP_01452399.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] gi|114552184|gb|EAU54686.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] Length = 467 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 56/495 (11%), Positives = 120/495 (24%), Gaps = 43/495 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M + + + + + NI N ++ + + T Sbjct: 1 MGIYNALFSGASGLTSFGEAVRVVGDNIANVNSIGFKSQSVSFTDVLSQTIGVSSTGSQQ 60 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + T + SSA AL++ N + Sbjct: 61 VGNGVKIGTISRNQ---MQGSIQNTSSATDMAINGNGLFALRD-----PATNQTSYSRAG 112 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + +I+ ID + SA ++ A + +++ Sbjct: 113 SFQLDKNFNLIDGGGNIVQGYAIDP---LSGKAIGSATDLSFGNLAAQAKSTANVTSSLT 169 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 S V+ F A H D + ++ + D Sbjct: 170 LDSTAPVLPTGTVFNPADPATFHFKSDVTVFDALGATHVVSQQFTRMGQDAAGNNVWDYH 229 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T + + ++ + G V + + V Sbjct: 230 TSVDGKEIVGGTAGTPTEVGAPTASTVSAGGTVTAIGTQTL---------------VFGP 274 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + E A ++S + Q Sbjct: 275 AGELVQENAPPATFNWSGSAASTITLNFGNAAGQGTLYPVATADSQGITGTGLDATVQMA 334 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + + + + + +A + L Sbjct: 335 GAFATRQVSKDGYAAGFLDTLTTDSSGTVSGTFTNGQRRALFQVALAKFPNDAVLNHVGG 394 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + E +S S L I+ V+L E LI V++ Y ++K I Sbjct: 395 NLM--QETIQSGSPVLEKPGNGGMGTITPYGLEQSNVDLAAEFVKLIVVQRGYEANSKTI 452 Query: 466 MFTDKMLQTLLEGVK 480 + TD+ML +L++ + Sbjct: 453 LTTDQMLSSLMQLKR 467 >gi|123442784|ref|YP_001006761.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161322|ref|YP_004297899.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089745|emb|CAL12598.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605242|emb|CBY26740.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665552|gb|ADZ42196.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860606|emb|CBX70903.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 419 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 108/476 (22%), Gaps = 62/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTTTTTNRRLDLAISQSGFFRMQD------SSGGVLYARNGQFKLDENRNIVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + ++ N T Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVALSVPQNMIPAKATT 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + DV I ++T + T F+++ Sbjct: 151 SGTMVANLTSTHDV--------IPVATTFDPTKPDTYSFVNNMTTFDSLGNRHEINVFYV 202 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S + D + S+ A K ++ + + N Sbjct: 203 KRSESTTAGNTWDVYTLDSSAKPAETADKRGSMTFDTNGALQSVTN-------------- 248 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q S + + Sbjct: 249 ----GTNPASTSDFTLTIPMGVVNGAPAQTFTLSVAGSKQQNTGTDSIVTQNQTGYAAGE 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y +S + + L N W E S + L Sbjct: 305 FTGFQINNDGSIVGTYSNSQTQLLGQIVMVNFANPEGLSSEGDNV--WKETLSSGNPILG 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 363 TAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 418 >gi|166712062|ref|ZP_02243269.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzicola BLS256] Length = 407 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 38/476 (7%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + + A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + AL + ++ Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTTPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + QY + Sbjct: 250 -----------------MAPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APNTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|119477947|ref|ZP_01618047.1| flagellar hook-associated protein K [marine gamma proteobacterium HTCC2143] gi|119448860|gb|EAW30102.1| flagellar hook-associated protein K [marine gamma proteobacterium HTCC2143] Length = 676 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/409 (15%), Positives = 137/409 (33%), Gaps = 21/409 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + + NI NA ++Y R+ + TV Sbjct: 2 SLLNVGISALTTNQKLLQVTGNNISNAGVESYSRQRAEVSTRPEQLLGGSYQGTGNTVDN 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + +S+ + + +DD + +S+ ++ES Sbjct: 62 ISRVVDQFLITQIQLDTSSRSSLEAFARNMEQVDGLLSDDFS--GLSAILSEFFAAIESS 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ + + + VI AE + N + V++ D ++ S + +N Sbjct: 120 AQDPTSEPARQVVITQAESLALKINNLSDRVEQQLNFVDGQLRALSSQATTLAKGIASLN 179 Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + I + LDQRD +L++++EI+ IST+ N D+ V+ +G L Sbjct: 180 EGIADQVARGGGAQPNQLLDQRDEMLRQLAEIVNISTVKDGN-DLNVFIGNGLPLVTGFK 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + N + + VS + G++ LL R V N + Sbjct: 239 ALALDTQQGVD----GVNIMLVGRGSVSQRVTHLMSGGEMGGLLDFR-EVGGDLLNVIGR 293 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + L S ++++ + + + G I + + I++ P ++ + Sbjct: 294 IGIGLADSVNQQNALGIDLDGNAGGTIFRDVNAGTIPQSRIIADGDNSAPTLQNMAINIT 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 D G ++ + + + Y + V GI ++ Sbjct: 354 DVGQLTTS-DYRLSVVDNDGAAPLDYRILRVSDNATTIVNGIAGAQSIA 401 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 53/455 (11%), Positives = 126/455 (27%), Gaps = 21/455 (4%) Query: 34 KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93 + T + V ++ + + L + G + L ++ Sbjct: 235 TGFKALALDTQQGVDGVNIMLVGRGSVSQRVTHLMSGGEMGGLLDFREVGGDLLNVIGRI 294 Query: 94 DHYNNSPTHYISKLRDSLESYS-------KNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + L L+ + N + + D N + Sbjct: 295 GIGLADSVNQQNALGIDLDGNAGGTIFRDVNAGTIPQSRIIADGDNSAPTLQNMAINITD 354 Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + N + ++ + T A D IS Sbjct: 355 VGQLTTSDYRLSVVDNDGAAPLDYRILRVSDNATTIVNGIAGAQSIAIDGFSIDISSATQ 414 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + + + + + G + + + + + +N Sbjct: 415 ANLALNDQFRIRPTRAGGA----------DTTVDITRQQELAYSVPVVTDAKIGNNGTGV 464 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + G++ A++ + N + + A VL + A + + Sbjct: 465 ISSGEMLAVVDDSALALTPA-NPIYQSAGVLAAPVLIQFTTATDYTVYETSDPFNPAVLF 523 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK-NLAGYPDLINHYCDSFNKN 385 + G I ++P+F+ ++ N + + + + ++ + Sbjct: 524 SGTIIPGQKNEI--FGSQGTDPNFIGFQVTIDGAPQVNDEFTIDFNQNGSSDNRNAAALS 581 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 I + I + + + S+ + S + GVNL Sbjct: 582 GIRAQNILDGNSTNFENSYGRLIERIGTQTAQAKVGRDASESLLFQSQASRDSMAGVNLD 641 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE + LIK EQ+YN S +LI ++ TLL ++ Sbjct: 642 EEAANLIKFEQAYNASAQLITVARQIFDTLLSSLR 676 >gi|307546968|ref|YP_003899447.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] gi|307218992|emb|CBV44262.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] Length = 422 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 54/476 (11%), Positives = 132/476 (27%), Gaps = 59/476 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS + NI N+ + DT+ N V ++ Sbjct: 2 GFSQALSGLNAASSSLDVLGNNIANSQTVGFKGSDTLFADVYANSKVGLGTKVSRVLQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L + + + F ++ +L + + Y +N Sbjct: 62 GEGNLESTGRNLDLGISGEGFLRFQQN-------GEVVYSRNGQLSMTADGYLENAQGAR 114 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +++A +V S +V A ++ + L V + + Sbjct: 115 LMGFGVNDAGQVQTGGQPSVLQVSAEEMAASATTDVATT---LNLDSREAVGEQLDQVDV 171 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + +Q+ + + ++ N V Y G + Sbjct: 172 TTDMSDPANNQQTLDYHYANNFTAYDSLGNPRNATVYYQKTGANSW-----TGRVTMDGH 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 Y +++ F + +++ G+ + + + E++ L Sbjct: 227 YDASNDFTLTFNNSGQLATINGNDAGDPANMPTVSVASDNTTPLGGEPAELSFTL----- 281 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 I + Q+ + Sbjct: 282 ----------------------------------DIAGSTQFGNTSRASDLIQDGYTSGS 307 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ +Y + ++ +A L N W S + Sbjct: 308 LVGISIEDDGTIVRNYTNEQSRPAGQVSLASFRNPEGLDPVGDN--AWAATAASGQELVG 365 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + V++ +EL +I +++Y +++ I D++LQT + Sbjct: 366 APGTGQLGGIQSGVVESSNVDMAQELVDMIVTQRAYQANSQTIKTQDEVLQTAINL 421 >gi|291534844|emb|CBL07956.1| flagellar hook-associated protein FlgK [Roseburia intestinalis M50/1] Length = 589 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/395 (11%), Positives = 106/395 (26%), Gaps = 30/395 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47 ++ N+ N D YVR+ + S Sbjct: 5 FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 VT+ D++ SS + + + + ++ Sbjct: 65 LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQNALTDF 123 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + K + + V+ A+ + ++ + + + +I +I + Sbjct: 124 WGSFQELYKYPEDSVYQNLVVQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183 Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ +N I+ A A D RD+ L +++ ++ IS N + V Sbjct: 184 KTISELNLQIQKIEAGNIETAMTLRDARDLALDELASLVDISYKEEVNGVVRVSVEGNEF 243 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID----------GVVVSSNQGSAVPKGKIKALL 276 + E + + + D + + G+IKAL+ Sbjct: 244 VNENGYYKVEKQTDKVTGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 R V +++ L + + + ++ + S Sbjct: 304 LARGDKVANYKDILGVDGKTYDDTTGMSVMLRAEAQMDQLFHGIATAINDILCPNTEASN 363 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 I +N + D + N K L Sbjct: 364 YITGLT--GNNSVTMTDADGNTYTVTANTKILDAD 396 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 48/166 (28%) Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 V + + QY + + + L +++ Sbjct: 420 YTEVTYTDTSVNPPTTKTYYLYNEEDPTDTTKQYTMASTGVNSALITDETLLPHLQQNGD 479 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + + + Y I + + + Sbjct: 480 VDQSLMATLAAVWDKESLTVNPNDTKAYSFKGYYTAMIEEVATYGNVYNSTATNLSQTVQ 539 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + +GV+ EEL+++IK + +YN S++ I ++M++ L+ Sbjct: 540 SVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 585 >gi|95928662|ref|ZP_01311409.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95135452|gb|EAT17104.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 425 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/480 (8%), Positives = 110/480 (22%), Gaps = 55/480 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + + ++ + NI N++ Y T+ + Sbjct: 1 MGLTSTLYSGISGLQTNAEAMSVTGNNISNSNTIGYKSSSTVFSDM-------------- 46 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + +++ Q ++ S + S ++ S ++ Sbjct: 47 --LSATISTTGTSVNQVGRGSELTTVRSNFSQGSFQSTSSDTDLAVEGAGFFMLSAAGTD 104 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 +++ + + V + Sbjct: 105 EVVYTRNGAFHFDPGGYLVNADGY---------------------------RVQGQLFDA 137 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + D+ Q + + N N G L + Sbjct: 138 DGTPGGGDPVDIKVDLTSQVPALQTSNIVLTTNLNSGTEEIPGGFDLSDPSESSNYSTST 197 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Y G + + + DS E + V+ Sbjct: 198 PIYDAL---------GETHLATTYFTKTGDQTWEWNTVVDSADLDPSVASSEESTVIGTG 248 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D + Q+ + Sbjct: 249 TLTFDDDGQLIGTSGFDLDETTLMWASGADPTQSIAIEFDTTQFGRTSTVYSQDQDGYAA 308 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + Y + ++ +A L++ + S + Sbjct: 309 GEVVETSINSDGVVSVSYSNGETRDIATLTLATFTNPGGLVKEGNSLYS--ASRYSGNPQ 366 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + V+L +E +I ++ Y+ ++K+I TD+MLQ ++ ++ Sbjct: 367 IGTPG-ASQGIIYTNSLELSNVDLSQEFVDMITIQNGYSANSKVITTTDEMLQEVINLIR 425 >gi|254470088|ref|ZP_05083492.1| flagellar hook protein [Pseudovibrio sp. JE062] gi|211960399|gb|EEA95595.1| flagellar hook protein [Pseudovibrio sp. JE062] Length = 561 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 61/563 (10%), Positives = 137/563 (24%), Gaps = 85/563 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 MS+ N A + S+ +I N+ N+ Y R DT + Sbjct: 1 MSIYGAINSATTGLDAQSKALENISGNVANSSTTGYKRLDTSFSDLVSSTGSRQAEQVSG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + T R+ N + + + + S Sbjct: 61 TVIATSRATN--YLSGDITSADRNTYMAINGPGYFLVTNRDGLGQETPESFYTRAGDFEL 118 Query: 110 SLESYSKNLSEDILGKTVIDNAEE----------------VVQNFNTSAREVQKIRADAD 153 E N + L I+ A Q + Sbjct: 119 DTERNLVNSAGYFLQGYPINPATGAVSDRAVPIQVSDAPMPAQPSTQINYQANLPSKPTT 178 Query: 154 KEIELEISNLRRFLSELT---------------------------------VVNDAIKFK 180 + + + +ND I Sbjct: 179 ANYQKTDGAANSQYVDPSVFAEPHELQTPVLDDTSSVKLTADQKLTDAKQFSLNDTITLS 238 Query: 181 TASKHD---AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DI 235 D LL K+S + G++ ++ + + + + + + Sbjct: 239 LGGNPDEVFTVKADTTVQDLLDKLSSMHGVTAELQADGKINISSLSELNVVQAGTAVPGQ 298 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL-DEMA 294 F M+ S + VV + + D +L + Sbjct: 299 TFLNMDFDPQPLASTGTYDPNVVTGDKADDFIKSSIAGGQETVYDENGTPVNVELRWALN 358 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF---- 350 S + V I+D D +L S + + + Sbjct: 359 AENKWSLFYNTNTKATGDEVAWKKISDMSFDAAGRLTSPASGLVDIPDLEVNGVGMGDIT 418 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L+ G ++ + + + + ++ D + + + + Sbjct: 419 LKFGLDDLTQYEDVIGGASNIGTSQDGFPSGKLQDVSVDAEGNVIGKYSNDKSQKLFKIP 478 Query: 411 LEKNR-------------SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 + S++ I + ++ +E S LI +Q+ Sbjct: 479 VATFAAEHELQRVDGAAFSETSTSGEPDFRNGGTIRAKALESSNADIAKEFSKLIITQQA 538 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y+ ++K++ ++ML ++L V+ Sbjct: 539 YSANSKVLSTANQMLDSVLNIVR 561 >gi|291539398|emb|CBL12509.1| flagellar hook-associated protein FlgK [Roseburia intestinalis XB6B4] Length = 587 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 45/392 (11%), Positives = 106/392 (27%), Gaps = 31/392 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47 ++ N+ N D YVR+ + S Sbjct: 5 FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 VT+ D++ SS + + + ++ Sbjct: 65 LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQDALTDF 123 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + K + + VI A+ + ++ + + + +I +I + Sbjct: 124 WGSFQELYKYPEDSVYQNLVIQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183 Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ +N I+ A A D RD+ L +++ ++ IS N + V Sbjct: 184 KTISELNLQIQKVEAGNIETAMTLRDARDMALDELASLVDISYKEETNGVVRVSVEGNEF 243 Query: 227 LFETVPRDINFEK----------MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + E + + + + + ++ + + G+IKAL+ Sbjct: 244 VNENGYYKVEKQTDKVTGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 R V +++ + + + + GI N + +E Sbjct: 304 LARGDKVANYKDIVGLDGKTYDDTTGM---SVMLRAEAQMDQLFHGIATAINDILCPNTE 360 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 N S + + + Sbjct: 361 ASNYITGLTGNGSVTMTDADGNTYTVTANTKI 392 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 13/238 (5%) Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLI 298 + ++ + +G V ++ + D +L E+ L Sbjct: 357 PNTEASNYITGLTGNGSVTMTDADGNTYTVTANTKILDADKCAVGSDGKLPPQELFTRLG 416 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + +D + Q + VN ++ + L Sbjct: 417 TERYTEVSYTDPASGETKTYYLYNEEDPADTTKQYTMGSTSVNSALITDETLLPHLRQNG 476 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + +Y IG + + Sbjct: 477 DVDQS-----------LMATLAAVWDKESLTVNPNDTKAYSFKDYYAAMIGEVATYGNVY 525 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + +GV+ EEL+++IK + +YN S++ I ++M++ L+ Sbjct: 526 NSTATNLSQTVQSVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 583 >gi|312882653|ref|ZP_07742390.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] gi|309369614|gb|EFP97129.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] Length = 624 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 57/451 (12%), Positives = 149/451 (33%), Gaps = 23/451 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENV 50 MS + A +Q + NI N + Y R+ + V Sbjct: 1 MS-SDLLTLGSQSVLTAQKQLNTTGHNISNVNTDGYSRQSVIQATETPRYHSGQTYGMGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R L+ ++ ++ ++ + M + +++ D+ Sbjct: 60 HVEKVRRSWDQFAVSELNVSTTNYARKMDDETNLDMLSSMLSSISSKK-IPENLNEWFDA 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++S + + ++ + V++ A+ + QN N ++ A+K+++L + + + E+ Sbjct: 119 VKSLADSPNDVGAREVVLEKAKLIAQNMNDVHETIRTQADIANKQLDLAVERVNQIGIEI 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFE 229 ++ + A +D +D + L+ ++SE ++ R N + V+ +G TL Sbjct: 179 RDLHRLMMRTHA---PHNDLMDTHEKLIAELSEYTKVTVTQRKNKEGFNVHIGNGHTLVS 235 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + Y + +G + + + GK A+L +RD +P ++ Sbjct: 236 GTEASELRTI-DGYPDVHQHRLAMKEGKGLKAITTRDI-DGKFSAILSMRDEKIPQLMDE 293 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +A ++ + G + D + ++ + Sbjct: 294 LGRLATTFSLQVNKLQSQGLDLNGNVGGLMF-----TDFNSDIVAKSRVVTASDSTADLA 348 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + S K ++++ + G + + F I + +A + + + + Sbjct: 349 VYVEDISQLKGGEYSLQYVGGNYYVTRPSGEPFTVPVINNAIALDGIRIDIRQNLADGER 408 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + I+ Sbjct: 409 VMIRPTRNGSAQMKVETNDARDIAAQSYEAS 439 Score = 90.1 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 36/340 (10%), Positives = 98/340 (28%), Gaps = 3/340 (0%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ ++ + + + + S+ +N + + ++ R V Sbjct: 284 DEKIPQLMDELGRLATTFSLQVNKLQSQGLDLNGNVGGLMFTDFNSDIVAKSRVVTASDS 343 Query: 202 SEIIGIST---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + + + + + G + + + + + I I + Sbjct: 344 TADLAVYVEDISQLKGGEYSLQYVGGNYYVTRPSGEPFTVPVINNAIALDGIRIDIRQNL 403 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + P A +++ + Q E + ++ + + + Sbjct: 404 ADGERVMIRPTRNGSAQMKVETNDARDIAAQSYEASTTFAQGTAKFEISQVGALKEFEVI 463 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 ++ + G + + L N K A Sbjct: 464 VSPTGNEFAVTDTNGKVLLAPQPYPPSGPITVQGTSFVIGPGALPNDKFSANLVPSEGDN 523 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + I N T+L+ N + S + L S++ E ++ Sbjct: 524 GNLLKMQDIQTDKVLNNGESTVLDIFHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVAS 583 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ ++ +L Sbjct: 584 ISGVNLDEEAANMMKFQQAYMASSRIMQASNDTFNAILAL 623 >gi|332701538|ref|ZP_08421626.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] gi|332551687|gb|EGJ48731.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] Length = 696 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 55/461 (11%), Positives = 124/461 (26%), Gaps = 22/461 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N N N+ NA+ Y RR + Sbjct: 2 ISNLYYIGANALLNYQTAINVTGNNMANAETAGYSRRTVDFATRTTTDKYYGQVGNGSII 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + S+ + S E + ++ + + L E Sbjct: 62 QAIRRNYDSYLEDQYLGQSADSTYWSTVTSNCTAIESLF-VQVEDDGLSAVLDSLWTGFE 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ AE + N +++ + EI +++ + L +L Sbjct: 121 ALPSDPGGTANRTELLGTAESLTGMLNDLYADMRSEEERMNAEIRDQVNEVNDILGQLAE 180 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 VN + + D+R LL ++E + I TI + + + V T +G TL + Sbjct: 181 VNKGLVAHPENA----GLQDKRSTLLTDLAEYVDIRTIEQEDGQITVQTLEGQTLVDGSK 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + T + + F V + + + +I+ L S Sbjct: 237 AYSFTVQGPRATASLTTTSGFDGAVYFEGSSNNEL---RIEFLTSGDTSGGAGAATFKVS 293 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + S N + + + Sbjct: 294 TDGGNTWLSNDDGSVQTFTAGDIDHQVEVDGLSIWFGDSSDSSIPATTNIEAGDRFNVVP 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G K N+ N+ N + + ++ S+ W Sbjct: 354 KTGVYWVKTTSNMVNVTPLEGASNRLSGGSLAGLLASRDEYLGEAQERMDALAASLIWEV 413 Query: 413 KNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNLQEELS 449 Q + + G++ E L+ Sbjct: 414 NYAHSQGAGLSHHQSLLGTYEAEYTDRALSESGLSFAERLT 454 Score = 86.6 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 39/456 (8%), Positives = 115/456 (25%), Gaps = 12/456 (2%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 + + T S + + + L G K + Sbjct: 240 FTVQGPRATASLTTTSGFDGAVYFEGSSNNELRIEFLTSGDTSGGAGAATFKVSTDGGNT 299 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + ++ + + + + ++ + + Sbjct: 300 WLSNDDGSVQTFTAGDIDHQVEVDGLSIWFGDSSDSSIPATTNIEAGDRFNVVPKTGVYW 359 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ + + E + ++L + + ++ + ++ Sbjct: 360 VKTTSNMVNVTPLEGASNRLSGGSLAGLLASRDEYLGEAQERMDALAASLIWEVNYAHSQ 419 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID------------GVVVSSNQ 263 + + + + G+ Sbjct: 420 GAGLSHHQSLLGTYEAEYTDRALSESGLSFAERLTGGSLSFALYDEDTGEALGITGVDFS 479 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G G + + ++ +++ + + D + +E+ A Sbjct: 480 GVVATDGNTYSTFDPSVHSLENVRDAINDTFPGQLTASITDDRLMLAAEDGYEFESAGDS 539 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 L L T NP L + G V+ + + + Sbjct: 540 TGLLAGLGLNTFFTGDDLESIAVNPDLLANPGRVNSAHVNGAGEVNQGDGTTALALAALR 599 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 I + +L E + + +++ + S + + E + GVN Sbjct: 600 DTEITLSTTDWSMQGSLSECLATLVSKVGGDKAMAKTNFEVSFALAQDLYERQQSVAGVN 659 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + EE+ L +++ +Y+ + KLI ++M +T+L Sbjct: 660 VNEEVVNLTRLQDAYDAAAKLITTANEMFETVLSLK 695 >gi|332558508|ref|ZP_08412830.1| FlgE [Rhodobacter sphaeroides WS8N] gi|12057218|gb|AAF14370.2|AF133240_4 flagellar hook protein FlgE [Rhodobacter sphaeroides] gi|332276220|gb|EGJ21535.1| FlgE [Rhodobacter sphaeroides WS8N] Length = 423 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 N A + + A A+ NI N + + R Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + A + + Q F A + + + + E + Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + + + SA + ++ ++ ++ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGR 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ D D T + ++ + G + Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + + + G + Q L Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + + T + + G Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +G + Y + L + + G+ Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F I V+L EEL LI +++Y S K + ++ ++QT+ Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418 Query: 476 LEG 478 + Sbjct: 419 MNI 421 >gi|309388826|gb|ADO76706.1| flagellar hook-basal body protein [Halanaerobium praevalens DSM 2228] Length = 548 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 45/548 (8%), Positives = 124/548 (22%), Gaps = 70/548 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N+ Q NI N + + + Sbjct: 1 MLRSMYAGVSGLNSHQQMMDVTGNNISNVNTVGFKSSRVTFKEMLSQTIRGASAPQENRA 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 S + + + Sbjct: 61 GTNPQQVGLGVGVGSIDSDMSSGNLQSTGKTSDVAIQGDGFFVLRDGSTEVYSRAGNFNF 120 Query: 110 SLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN------ 162 + + + ++ + E + +++ + + E +++ Sbjct: 121 DEQGRLYSSSTGMLVQGWTANENGEYNNGLTRNNLGDIQLKQEINAEATDKVNFAKNLKA 180 Query: 163 --LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + T + + ++ D + D Sbjct: 181 NIINDLGIVQGSMQVSDGATTPVTDNINFSMEPVDGSHNVWEYTLKSDDPTTTFTDPTPT 240 Query: 221 T----SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 T G + E +N D + + Sbjct: 241 TTTGEYTGQIVLENDGSIDTASSDVDNLTVDINNSGNTDTLNFDDTIKLDKDGESLITNG 300 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + Q +++ + S K + E + L+ + Sbjct: 301 TGESIDLSYQQTAKRDVSINVFDSQGGKHSVLLPIEKIDNNTWEIDETKLEIDGNTLTTP 360 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG----YPDLINHYCDSFNKNFIFDPVA 392 + ++ + G +V F ++ + + D + D + Sbjct: 361 LGGNHEIKFNDSGEILSGETVDLTFTPAGPGVSQTVELDFSAMTQFADGGSLETNSDGMT 420 Query: 393 GINTN------VTLLEYARNSIGWL----------------------------------E 412 ++ +L ++ G + Sbjct: 421 ANFSSVNGYEAGSLESFSFTETGDIVGSFSNGLTQIQGKIAMANFANPAGLSRQEGVFEA 480 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + +Q F ++ S NL +E + +I ++ + ++KLI +D+ML Sbjct: 481 TSNSGEAGIGEPAQGGFGSLAPSTLEMSNANLSQEFTNMITAQRGFQANSKLITTSDEML 540 Query: 473 QTLLEGVK 480 Q L+ + Sbjct: 541 QELVNLKR 548 >gi|56551501|ref|YP_162340.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis ZM4] gi|56543075|gb|AAV89229.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis ZM4] Length = 458 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + + + N + I N+ NA Y RRD +S Sbjct: 1 MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 VT + + +S G+ + + + E ++ Sbjct: 61 GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 SL + + N + I + + + SA ++ + E + +S + L Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L VN AI + A DQRD LL +S IGI+ + +N + + S + Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+T + +S+ GV + N + + Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +A + S + A + + + G Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNAWNSQGTTPSGAAGG----------------- 331 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 D +++ + I S + + + + + + + Sbjct: 332 ----DLLAITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + ++ ++N +++ + GV+L E + L++ +Q+YN S K++ Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447 Query: 469 DKMLQTLLEG 478 +Q +LE Sbjct: 448 QTTMQAILEL 457 >gi|241761145|ref|ZP_04759234.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374764|gb|EER64225.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 458 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + + + N + I N+ NA Y RRD +S Sbjct: 1 MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 VT + + +S G+ + + + E ++ Sbjct: 61 GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 SL + + N + I + + + SA ++ + E + +S + L Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L VN AI + A DQRD LL +S IGI+ + +N + + S + Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+T + +S+ GV + N + + Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +A + S + A + + + G Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNAWNSQGTTPSGAAGG----------------- 331 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 D +++ + I S + + + + + + + Sbjct: 332 ----DLLTITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + ++ ++N +++ + GV+L E + L++ +Q+YN S K++ Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447 Query: 469 DKMLQTLLEG 478 +Q +LE Sbjct: 448 QTTMQAILEL 457 >gi|217034660|ref|ZP_03440065.1| hypothetical protein HP9810_901g7 [Helicobacter pylori 98-10] gi|216942868|gb|EEC22359.1| hypothetical protein HP9810_901g7 [Helicobacter pylori 98-10] Length = 606 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 61/484 (12%), Positives = 135/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + ++ E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALVQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD A+ LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHHIEGEPVEFNNDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T+ ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVIKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNNDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISTIDRMIDTLLGIKQ 606 >gi|22127327|ref|NP_670750.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45442796|ref|NP_994335.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108809055|ref|YP_652971.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108810748|ref|YP_646515.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145597817|ref|YP_001161893.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|150260249|ref|ZP_01916977.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162421081|ref|YP_001604847.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165924960|ref|ZP_02220792.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939066|ref|ZP_02227618.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008888|ref|ZP_02229786.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211930|ref|ZP_02237965.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399572|ref|ZP_02305096.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419268|ref|ZP_02311021.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425161|ref|ZP_02316914.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466340|ref|ZP_02331044.1| flagellar hook protein [Yersinia pestis FV-1] gi|218927912|ref|YP_002345787.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229837408|ref|ZP_04457571.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|229840621|ref|ZP_04460780.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842828|ref|ZP_04462980.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229900945|ref|ZP_04516069.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|270487673|ref|ZP_06204747.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294502788|ref|YP_003566850.1| flagellar hook protein [Yersinia pestis Z176003] gi|21960408|gb|AAM87001.1|AE013948_9 putative flagellar hook protein [Yersinia pestis KIM 10] gi|45437662|gb|AAS63212.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108774396|gb|ABG16915.1| flagellar hook protein [Yersinia pestis Nepal516] gi|108780968|gb|ABG15026.1| putative flagellar hook protein [Yersinia pestis Antiqua] gi|115346523|emb|CAL19399.1| putative flagellar hook protein [Yersinia pestis CO92] gi|145209513|gb|ABP38920.1| flagellar hook protein [Yersinia pestis Pestoides F] gi|149289657|gb|EDM39734.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162353896|gb|ABX87844.1| flagellar hook protein [Yersinia pestis Angola] gi|165913022|gb|EDR31647.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923160|gb|EDR40311.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992227|gb|EDR44528.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206676|gb|EDR51156.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963262|gb|EDR59283.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052076|gb|EDR63484.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055924|gb|EDR65705.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682284|gb|EEO78376.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|229690095|gb|EEO82152.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229696987|gb|EEO87034.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705531|gb|EEO91541.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|262360820|gb|ACY57541.1| flagellar hook protein [Yersinia pestis D106004] gi|270336177|gb|EFA46954.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294353247|gb|ADE63588.1| flagellar hook protein [Yersinia pestis Z176003] gi|320016711|gb|ADW00283.1| Flagellar hook protein flgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 413 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 54/477 (11%), Positives = 117/477 (24%), Gaps = 72/477 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A N ++Q +I NI N+ K + T + P V V Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D + F ++E + R ++ Y N Sbjct: 62 K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L D A + + +L+I+N ++ Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + + + + + Y TT + Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTPPAGSVAS-EWAVH 216 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + + P+ + + G Sbjct: 217 HTVDGGTATPPLTLQFTDTGALIPGIPAAGS----------------------------- 247 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + I Q + R+ Sbjct: 248 -----------GMKGSAINLHGTFNPAGAADYDIDIDYTGTTQLSQGFTTTRNKSDGYTS 296 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + N + + + + + +A + L+ +N W E N+S + Sbjct: 297 GVKNAERIESDGSVYATFSNGERVLQGKVVLANFASPSGLVT--QNGTSWSESNKSGAAL 354 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 L + + V++ EL L+ +++Y S K+I D M+ L + Sbjct: 355 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 411 >gi|283852232|ref|ZP_06369505.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283572458|gb|EFC20445.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 518 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 53/519 (10%), Positives = 134/519 (25%), Gaps = 45/519 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + + SQ A+ N+ N + Y + + T + ++ Sbjct: 2 TAIWTGVSGMLSYSQGIANTSNNLANTNTVGYKSSRMLFADMISELAGSTTDTNSQIGMG 61 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSA--------DDHYNNSPTHYISKLRDSLESYSK 116 + S + G + +++ + D + + + + Y Sbjct: 62 VQVGTVSMSTGVGAIATGDQSMDMAIDGEHGYFTVKDPVSDKTYYTRAGDFNFNTDGYLV 121 Query: 117 NLSEDILGKTVIDNA-------EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + +D A V + IR ++ + Sbjct: 122 SPTGNRVQGWAVDQAAVTQAERTGSVLPEVPVTGDPTDIRITDFTLPAQATGSVSMITNL 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-------NDMVVYTS 222 ++ + I T D + + I N V + Sbjct: 182 DSLTDPGILDATDPYCSMFKSYDAANTPPATAAYTSDIKVYDAEGGAHSLTVNYSKVTDT 241 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV------------VVSSNQGSAVPKG 270 G +E + + +S T + + + G + G Sbjct: 242 GGKEYWEYMVTVPPADDGSSVTGGTSKAGVLMIGTLTFSAQGVLENQTAFTPTGGDPTDL 301 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD--- 327 + + VP ++ + S G S + D Sbjct: 302 SSWTQAPLDSTGVPQMSATFKSVSNGSVLSSQTMGFKTGLSASGASWNPNGPSSAADIGT 361 Query: 328 ------NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + Y ++ N ++ + + + Sbjct: 362 LAAANAGFDPSSTRNAVACTTSYATSSYTQAQSQDGFASGTLNSTSVDENGVVSGTFSNG 421 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 K+ +A L N + S + + +++ IS + Sbjct: 422 QTKDLYVLALADFRNPTDLRREGNNLLS--ATTESGAATTGRANSGIYDGISGYSLESSN 479 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E+ LI +++++ ++K++ D M++ LE K Sbjct: 480 VDMATEMVNLITLQRAFQSNSKVVTTADTMMEKALEIKK 518 >gi|238782798|ref|ZP_04626827.1| Flagellar hook-associated protein [Yersinia bercovieri ATCC 43970] gi|238716221|gb|EEQ08204.1| Flagellar hook-associated protein [Yersinia bercovieri ATCC 43970] Length = 544 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 75/545 (13%), Positives = 161/545 (29%), Gaps = 75/545 (13%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56 N AQ+ ++A + N+ NA Y R+ M + V V + Sbjct: 1 MNLAQSGLSSAQAALNVVGNNLNNAMTAGYSRQSIMLGQAGGRTTNVGFFGYGVQVDGVQ 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L + + + + + M DD N+ + ++ + +LE S Sbjct: 61 RAYDGFINNQLRSAVTDFSALTSRHNQLSQIDNMFGDDT--NNISVSMNNIFTALEKMSS 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + + FN+++R + + + +I ++++ + +L +ND Sbjct: 119 DPVSPAARQGALSQFRAISSQFNSNSRTLNGLEKSTNTQINQTVNDINANVKQLAKLNDE 178 Query: 177 IKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRD 234 I + D LDQRD+LL+++S +GI + V ++G L Sbjct: 179 ITKIHGQTGGLPADLLDQRDMLLEQLSGAVGIRVNEDTTTGRVNVTLTNGMQLVNGNRAY 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ + S + GK+ L + R+ + +NQL+++A Sbjct: 239 ELETSSSAEDPSKTVVSYIDASGNKMQLNESTMTSGKLGGLFKFRNEDLVDARNQLNQLA 298 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + F+E + + + PG I + + S+ + D Sbjct: 299 LQMANKFNEVNAAGYDLDGNPGGDIFNIANPVALANRNNASDATLDISFTDISQVKAEDY 358 Query: 355 GSVSKKFLWNV--KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 K N + + + F + T + N + Sbjct: 359 TLTYKGPGQNDWEVKTSDGRTITPTIGAAGELEFDGISITPQGTPEPNDSFVLNPTSGIA 418 Query: 413 KNRSDSHDLHM------------------------------KSQVVFNHISESYSNTVGV 442 + + + S ++VG Sbjct: 419 GSLNVAITQGDEIAASSSSDPSDVSNNENIKEMIAIKDATLIGNGTLTEAYASLVSSVGS 478 Query: 443 NLQ-----------------------------EELSFLIKVEQSYNISNKLIMFTDKMLQ 473 ++ EE L Q +N + K++ + Sbjct: 479 SMTALKSDVTTGGNVLEAVALQQQSVIGVDLNEEYMRLEMYSQYFNANTKVLQTATTLFD 538 Query: 474 TLLEG 478 TLL Sbjct: 539 TLLSI 543 >gi|90415312|ref|ZP_01223246.1| flagellar protein [marine gamma proteobacterium HTCC2207] gi|90332635|gb|EAS47805.1| flagellar protein [marine gamma proteobacterium HTCC2207] Length = 1001 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 113/354 (31%), Gaps = 13/354 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + Q +++ NI N + + Y R+ + T+ + + Sbjct: 1 MADILSIGAGATQLYRQALSTVSNNIANLNTEGYSRQVSETSENAPSQQGTVFVGSGARL 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L S + Q+ L + + + + + K + Sbjct: 61 DNIARAYDEFAESSLRDSGSQLSNQQPLIDYANRVVDIMGSEAS--GLSSAMDKFFAAAS 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S + + L + + +AE + F + ++ + + + IE +++ L +L Sbjct: 119 AVSADPASINLRSSFLRDAEGMASRFRELSDQLGAVELETRESIESQVNQLNNLSEKLAF 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 VN + K LDQRD LL+++S I I + + V + Sbjct: 179 VNKQLNKKLTLSSQPPMMLDQRDQLLREMSAITKIHVTEVTSGQVTVRLASSA-GSVITD 237 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +++E S+ I S S V G++ L+ R + + D Sbjct: 238 DKLHYELGVSFDDNDPGRVDLIIEPYGDSRVASTVTNGELGGLMNFRSQTLAPAMDSFDF 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +A+ L+ ++ + G + D G + Sbjct: 298 LAQTLVAEINQIHSAGLDGRGEAGGDLFAIDLDFTVSAPAGNANAAIAIEVTSG 351 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 45/410 (10%), Positives = 105/410 (25%), Gaps = 5/410 (1%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + ++++ S ++ ++ + + Sbjct: 596 STNTSLSATATSADVSLQSNDSSVTVDLISANALVLNDYSMAALELEAGAVSSAVLMATW 655 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 NA +A + I D + +++ + T + + A Sbjct: 656 INAATDSTGVTATATNLITIEED-SIDFTQQVNINGVLIGNGTPLTSVRELANAINEQTD 714 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 ++ EI N + S + I ++ Sbjct: 715 STNVMANITYDGKLEITNARGYDGENITLSNPDSTSSDNALGQSNKIFVGQLQLEADEEI 774 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 DG+ ++ + +V + A E A Sbjct: 775 RFTFGDDGLPKDLAVLGLRTGIYVEGTVTQDLAVFVTGTDSGRVAAGFSTTDSDEVAASA 834 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + + L GS ++ + Sbjct: 835 AAPFIIEFTSATEYTITDTATGTLVATRSYSEGQDIAHKGFTLALEGSPVA---GDLFVV 891 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 D I + N + D + + TL E N + + + + QVV Sbjct: 892 DSNKDGIGDNGNMLNLVALQDKELMADGS-TLGEAYINLVNGVGSKAALAMMSKEALQVV 950 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + GV+L +E LI+ +Q+Y S ++I K+ ++L Sbjct: 951 YDQAVAAKDQVSGVSLDQEAGELIRFQQAYQASAQIIQVASKLFDSILSI 1000 >gi|188527901|ref|YP_001910588.1| flagellar hook-associated protein FlgK [Helicobacter pylori Shi470] gi|188144141|gb|ACD48558.1| flagellar hook-associated protein FlgK [Helicobacter pylori Shi470] gi|308062395|gb|ADO04283.1| flagellar hook-associated protein FlgK [Helicobacter pylori Cuz20] Length = 606 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|154175384|ref|YP_001408368.1| flagellar hook-associated protein FlgK [Campylobacter curvus 525.92] gi|112802604|gb|EAT99948.1| flagellar hook-associated protein FlgK [Campylobacter curvus 525.92] Length = 623 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 123/408 (30%), Gaps = 39/408 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + N + N A Q ++ NI NAD+ Y R+ + + S V Sbjct: 4 IFMSLNTGVSGLNAAQTQISTTGNNIANADSAYYTRQRVVQSASPAMNTVPGGVGTGTQV 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + + L SS + Q D + I + + Sbjct: 64 DTVKRIHDEFTYSRLKTASSNLENTAYKQRILQEVTKYF-PDLNDKGMIKDIQEYFGAWN 122 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 ++ N E +++ A + N + SA+ + ++ D+ I++ I + ++ Sbjct: 123 DFASNPDEGSQKVNLLNKASVLTSNLSQSAKTLYALQTKVDETIKINIKEINSLAKQIAN 182 Query: 173 VNDAIKFKTASKH-----DAHDFLDQRDVLLQKISEIIGI-----------STIVRNNND 216 +N I+ A +A+D D+RD L +S+++ + + + Sbjct: 183 LNAQIQRVEAGADAGIKINANDLRDKRDELELAMSKLVNVSSFKSDLKSDATVDTGITDQ 242 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 YT + + + + M+S + + + GKI A L Sbjct: 243 GKFYTLNIGGVNIVDGPNYHELSMSSTDTGEFTKIYYEREDGKRIPMEDKITNGKIGASL 302 Query: 277 QIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +R D + + + LD ++ LI S + + + Sbjct: 303 DLRGRNYDVKEQKFTDGAIQKYIDNLDTFSKTLINSTNNIYAESAVERSNSDEISYLEDD 362 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 I E I Y + + + G Sbjct: 363 KTLMNFSNSIREGIFEAVVYDNKGNVVARKTININGTTTMNDTTYGNS 410 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 52/384 (13%), Positives = 104/384 (27%), Gaps = 5/384 (1%) Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 K + + + + + RE K DK +I Sbjct: 240 TDQGKFYTLNIGGVNIVDGPNYHELSMSSTDTGEFTKIYYEREDGKRIPMEDKITNGKIG 299 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 V + A + + L+ + I S + R+N+D + Y Sbjct: 300 ASLDLRGRNYDVKEQKFTDGAIQKYIDNLDTFSKTLINSTNNIYAESAVERSNSDEISYL 359 Query: 222 SDGTTLFETVPRD----INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 D TL ++ I I+G ++ Sbjct: 360 EDDKTLMNFSNSIREGIFEAVVYDNKGNVVARKTININGTTTMNDTTYGNSIVSDFNSDS 419 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 ++ + + D + + + D + Sbjct: 420 DDNNDNNMLNDVNDYFQASYDYDKTTNKGTFSLIPKQAQGLYSISLVDKGTNFPGVVGVN 479 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INT 396 + D K K + G ++ N F ++ Sbjct: 480 RFFKGTDAKSIGVNNDFVQDHTKIRAYSKPVVGNNEVANKMVQLQYTKQTFYSNGTALDR 539 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 + T+ Y R + + ++ H + + E + + GV+ EEL+ LI+ + Sbjct: 540 DETIEGYYRYFTTDIASDTEANNTTHDTNTALQKTAEEEFQSISGVDTNEELTNLIRFQA 599 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 SY + K+I D+ML TLL + Sbjct: 600 SYGAAAKIITTVDQMLDTLLTLKQ 623 >gi|15895480|ref|NP_348829.1| flagellar hook-associated protein FlgK [Clostridium acetobutylicum ATCC 824] gi|15025209|gb|AAK80169.1|AE007721_9 Flagellar hook-associated protein FlgK [Clostridium acetobutylicum ATCC 824] gi|325509627|gb|ADZ21263.1| Flagellar hook-associated protein FlgK [Clostridium acetobutylicum EA 2018] Length = 634 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 55/415 (13%), Positives = 115/415 (27%), Gaps = 28/415 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L N + Q NI NA Y R+ Sbjct: 3 GLFGTLNIGVSGLTVNQQAIDVTGHNISNASTDGYSRQRVDIQTRSPYGMPSLNSAAGPG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + + D + ++ G + ++ + E M + Sbjct: 63 LFGTGAEVYSVQRVRDSFLDYQIRDLTTRNGTFKTTNNYLSEVESMFDESSSAGISASIT 122 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + + K++I NA+ + N ++ K++ D I +I ++ Sbjct: 123 TFFSAIQNYTNASSATPTSIKSIISNAQTMTNQLNNIYTQLTKLKGDVQLGINDDIISVN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ +N I + + +D D RD+LL ++SE GI+ + D D Sbjct: 183 SMLDKIDSLNQQIITVKQAGKEPNDLEDSRDLLLDQLSEKFGINVDSSPDFDG----EDV 238 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + L + + K + + I + K A +I V Sbjct: 239 SVLDKVGNVNPTLVKSVGNDNVNRFSYIDAVVKGTDTGS-------KNGAGEEIYSYEVD 291 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + I + + D + + Sbjct: 292 YYKLGNKASSDNRIKLNINMTESQAKEIEQARVLMTDKNGIALSSADGKTKLDGTASSYN 351 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S+ S + G + GY D +N + +N + Sbjct: 352 FSDLSLFKPVGGDINGEQTVQDKINGYIDQMNRVAKTIALAINTVSSGMVNPTQS 406 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 105/399 (26%), Gaps = 4/399 (1%) Query: 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 + L ++ + + S + +++ K + V + Sbjct: 235 GEDVSVLDKVGNVNPTLVKSVGNDNVNRFSYIDAVVKGTDTGSKNGAGEEIYSYEVDYYK 294 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 + R + + + L + I +A D Sbjct: 295 LGNKASSDNRIKLNINMTESQAKEIEQARVLMTDKNGIALSSADGKTKLDGTASSYNFSD 354 Query: 200 -KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + + +G + + ++S V + + DGV Sbjct: 355 LSLFKPVGGDINGEQTVQDKINGYIDQMNRVAKTIALAINTVSSGMVNPTQSQLASDGVH 414 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + + ++ + D AGN P L Sbjct: 415 STPSLDELPIFVNSDFTKDASNTTFKPSKYFNDTTNSGKNWEDY---ITAGNISINPDLL 471 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + + Q + + F N Y Sbjct: 472 GTNPSLKVRANDDQYGLPSENAVNGSTDQDRAIALAKLQKVAFKIQDVNPDNYTRSDFAK 531 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + + + VT+ +Y ++ + L + + + S V + I ++ Sbjct: 532 TLVKDTDTGVNTIKSDPDGVTVDDYLKSFVNTLGIDNQSASEGVKGSNNVLSQIKQTREA 591 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 T GV+L EE++ LI+ Y S K+I D++L ++ Sbjct: 592 TSGVSLDEEMTNLIQYSHGYQASAKIISTVDQLLDVVVN 630 >gi|238927685|ref|ZP_04659445.1| flagellar hook-associated protein 1 [Selenomonas flueggei ATCC 43531] gi|238884401|gb|EEQ48039.1| flagellar hook-associated protein 1 [Selenomonas flueggei ATCC 43531] Length = 579 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 57/385 (14%), Positives = 124/385 (32%), Gaps = 18/385 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQR 56 N + NI NA + Y R+ + + V VV Sbjct: 2 VRGIQNNQLSLDTTGHNITNASTEGYSRQRVDSAATNYQERPSLYGGVYVGGGVDVVALN 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 DK + SS + ++ E + +D + + + + S Sbjct: 62 RARNIYADKQFWSESSTQTLYKTYKTNYDKAEAVF-NDAKETGVLDAMKQFYSAWVNLSD 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S+ V+ +V T AR++Q E+ ++++ ++ V+N Sbjct: 121 YASDAASRTAVVQKGNNLVDRIKTGARQLQDQINAQYDEMRIQVNKANSITEKIAVLNKN 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + A+D DQRD+L+ K+SEI ++ V S+G TL + ++ Sbjct: 181 IMLAETNGGKANDLRDQRDLLVDKLSEITNVNVYEDATGQYTV-VSNGMTLVQR-DSNLT 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 E + + + G G +KAL + + L +++ Sbjct: 239 IEMSPPINNERYGINDYTLRIKEAGGMGYVPQGGVLKALQDTIVQD-KKYIDNLADISAT 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ +F++ + +N + ++ + G + T + + R + Sbjct: 298 LMTTFNDVHKLGAGIDNDATTWTNFFGRNAFHSDATGNNYTGERYVWHVDPTTGDRWMTA 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDS 381 ++ ++ + Sbjct: 358 TAQGVTRTATATGATVTAVDTSNAA 382 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 44/450 (9%), Positives = 114/450 (25%), Gaps = 11/450 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 R + + + T + ++ + + + + A+ Sbjct: 127 SRTAVVQKGNNLVDRIKTGARQLQDQINAQYDEMRIQVNKANSITEKIAVLNKNIMLAET 186 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 N + + RD L ++ + + V T + + + I Sbjct: 187 NGGKANDLRDQRDLLVDKLSEITNVNVYEDATGQYTVVSNGM-TLVQRDSNLTIEMSPPI 245 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 E + + + D + I + IS + + Sbjct: 246 NNERYGINDYTLRIKEAGG--MGYVPQGGVLKALQDTIVQDKKYIDNLADISATLMTTFN 303 Query: 217 MVVYTSDG--------TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 V G T F + N + G + V Sbjct: 304 DVHKLGAGIDNDATTWTNFFGRNAFHSDATGNNYTGERYVWHVDPTTGDRWMTATAQGVT 363 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + +I + D + + Sbjct: 364 RTATATGATVTAVDTSNAADIHEMRSMQIIKALKVSDELTAQGGQNLVAARQIQNPAPIS 423 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 V+P + + + + + D N + Sbjct: 424 PTNPIGKVLPTVSPGTITYTYTFANMNGTADGTMAVELSKFFNMDQGNTINVAKLIGLPA 483 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + V++ +Y + L + + + + + I++ +T GV+ EEL Sbjct: 484 NECERAVGTVSINQYYNGVMNKLGADAENLNKKMKQQDDLMVQITQWRQSTAGVDWNEEL 543 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S ++K + Y ++++ D++L L+ Sbjct: 544 SNMLKFQTGYGACSRVLTSMDEILDRLINS 573 >gi|225850267|ref|YP_002730501.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] gi|225644919|gb|ACO03105.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] Length = 540 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 55/553 (9%), Positives = 127/553 (22%), Gaps = 88/553 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ F N + I NI N + + Sbjct: 1 MIQSFYTGNAGLNANKNWLSVISDNIANVNTIGFKAERVNFEDLISSSLTTFANNSPKNM 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + L ++ + F +++ + + Sbjct: 61 EIGGGSFVGSTTK---DFSQGALMNTNTPTDLALDGEGFFMVRDA------QDVTYYTRA 111 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI---------------- 148 + R NL+ L +D+A + Sbjct: 112 GQFRTDANGDLINLNGMKLLGWQLDDAGNIAGAIGAINIPNDMPPHVTTKLALKEPTNLD 171 Query: 149 -----------RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD----- 192 +DA + + L ++ +D Sbjct: 172 AGSELVTGVFDTSDARTYSYVNAITVYDSLGVPHEAQLYFVHTGPNQWRVFGLMDDEPIQ 231 Query: 193 --------QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 D L+ + + + I+ + + + T E+ Sbjct: 232 FNVPGDANTYDALVVEFNGVGQINRVFGYGINTDQTITGAGTETESGDLGQFTLNNTPVL 291 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 S + DG + G I L V I + G+ + + Sbjct: 292 PGSVVITQYTDGATTYNVNWIDDGHGNIIDLNNDNRVVGSISYDDGTVFINQFAGNGATE 351 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----------------N 347 AG+ + + I + + Sbjct: 352 TLTAGSYKTYDTTVSTNTIPPDSISIVPIPVNNPNSATLNTGGNPIQFTLDIQNMKQVES 411 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 K +++ + Y + K++ +A N L+ N Sbjct: 412 EFIFYAEQDGYAKGDLLSVSVSEDGLVRGVYSNGQVKDWARIAIATFNDKEILIRKGNNL 471 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 S ++ + V + I + V++ E LI +++Y + + I Sbjct: 472 F----LPNSQTYTPIIVPGGVISKIRGGFLELSNVDISREFINLITAQRAYQANARTITT 527 Query: 468 TDKMLQTLLEGVK 480 +D++LQ + + Sbjct: 528 SDQVLQETMNIKR 540 >gi|299531286|ref|ZP_07044696.1| flagellar hook protein FlgE [Comamonas testosteroni S44] gi|298720693|gb|EFI61640.1| flagellar hook protein FlgE [Comamonas testosteroni S44] Length = 422 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 45/483 (9%), Positives = 113/483 (23%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 F + + N AS+ I NI N++ + + V Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 S ++ + + + + F +K+ + E Sbjct: 62 ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 K + D + V+D + +Q+ T + +++ + T Sbjct: 116 KTVDNDNVMGYVVDPSTGKIQSGATPVPMSFPTGQPIPAKQTSKVNVELNLDARATAAAG 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + I ++ + T + +F ++ Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNVFNSLDATA 230 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + S Sbjct: 231 TPIGKAVFDASGKLTSVTPNAPTTGSGTT------------------------------- 259 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L ++ G + + ++ Q+ + + Sbjct: 260 -------------------LNLSVSGGTANPNGLQPFDVAFDFGGLTQFGTKFAVSSLKQ 300 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L N W+ + Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F + V+L EL ++ ++SY + + I D++ TL Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418 Query: 476 LEG 478 + Sbjct: 419 VNL 421 >gi|308063903|gb|ADO05790.1| flagellar hook-associated protein FlgK [Helicobacter pylori Sat464] Length = 606 Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLIDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 105/341 (30%), Gaps = 8/341 (2%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|146277702|ref|YP_001167861.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17025] gi|145555943|gb|ABP70556.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides ATCC 17025] Length = 1365 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 114/329 (34%), Gaps = 22/329 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVT 51 ++ + A++ + + NI N + + YVRR+ + S + V Sbjct: 2 SILDIARSGILSYRSALSVTAENIANVNTEGYVRREVVLAQVPGGQVSPTSAAGSGQGVR 61 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R + + L SA + LQ+ A E + S ++ ++ Sbjct: 62 VEDVRRAFDGLVAQRLRTADSAAASAQSLQTATAAVETLFLSGP--GSVPEALTGFFGAV 119 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S N ++ L + ++ + + +F T A +Q +RAD + L +L Sbjct: 120 NRLSTNPNDGALRQLMLAAGDTLAGSFVTVASGLQGLRADVADLSAQAAAQATSQLRQLA 179 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N + + S + LD+RD LL+ +S+ IGI+ V Sbjct: 180 ELNGRMVGSSGSAMNP--LLDERDRLLRDLSQTIGITASFDPIGRATVTLGS----TPGG 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + ++ + ++ Q + G ++ L +V +LD Sbjct: 234 PLLLEGAVASTIGTAESGGLVLEVNRNGTTLQSRQITGGTLQGLASSLSAV-DNATAELD 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA 320 +AR + G + + G + Sbjct: 293 RLARQVAGEMNAIHAQGIDQTGAAGGDLF 321 >gi|187926948|ref|YP_001893293.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J] gi|241665277|ref|YP_002983636.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] gi|187728702|gb|ACD29866.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J] gi|240867304|gb|ACS64964.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] Length = 645 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 131/406 (32%), Gaps = 14/406 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A NI NA+ Y R++ + T + + V Sbjct: 3 SSLLNIGATGLRVADINLQVTGNNIANANTPGYSRQEAVQTENIPLYAGVGYLGQGANVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + +A L S + N+ + ++ + + Sbjct: 63 TVKRIYDQFLTAQVQNGQAATSAADQLNSLLSGLSKY--VSDSNSGLSSALTSFFNGADG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + ++ A + FN+ A ++ + + +++ +IS++ ++ + Sbjct: 121 LASNPSSTTARQVFLNGASGLQSRFNSIAGQLNALSGQVNTQVQTQISSVNGTAQQIAAL 180 Query: 174 NDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ND I AS A+D DQRD L+Q +++ I S + + +Y +G L + Sbjct: 181 NDQIAKAEASTGQPANDLRDQRDQLVQTLNQSIKASVVQTGDGQYNIYVGNGQALVQGNQ 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y T S V+ + S + G + L+ R + + QN L Sbjct: 241 SYQLTAVPSEYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMDFRRNTLIPAQNSLGR 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + ++ + ++ G + +N Sbjct: 300 LAAAVSADVNTQNKLGMDANGNLGTDLFSVAGPSVAASSNNTGSATLTASITNANAGQGY 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + + + + ++G + Sbjct: 360 DYQVKYQGGAYTISHYPDGSASQTVTSWPTIIDGVTLNLSGTMNSG 405 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 39/442 (8%), Positives = 112/442 (25%), Gaps = 13/442 (2%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 T N+ V ++ + L A S +L +++ Sbjct: 214 KASVVQTGDGQYNIYVGNGQALVQGNQSYQLTAVPSEYDPTQLSVGYKS---PAGTVTID 270 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ + +++ LG+ + +V + D Sbjct: 271 DSQLGGGALGGLMDFRRNTLIPAQNSLGRLAAAVSADVNTQNKLGMDANGNLGTDLFSVA 330 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 ++ T+ A+ +D+ + IS S + Sbjct: 331 GPSVAASSNNTGSATL---TASITNANAGQGYDYQVKYQGGAYTISHYPDGSASQTVTSW 387 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + L T+ +F + + + D V++ + +G Sbjct: 388 PTIIDGVTLNLSGTMNSGDSFLVRPTADAAATMQTLTTDYHDVAAATPVVLTQGSNNTGS 447 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 S+ + + ++S + + N + Sbjct: 448 AAVSSLSVNSTYASSPLTSPISLTYSS-------AVGGSLSGFPSTVTVTANGTSTTYTG 500 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 Q + + ++ ++ + + Sbjct: 501 GTAPYTQGATYVFNGVQMTLSGTPGNGDTFTISANTANSTDNGNASALASLRNATLLDGG 560 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 ++ + + + + + + + + + GVNL +E L+K +Q Sbjct: 561 TASIGTAWNSLVTQVGVQANTAGTNLTSQKALLASSTSQQQSVSGVNLDDEAMNLMKYQQ 620 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 +Y + K++ + + +LL Sbjct: 621 AYQAAAKVMQTANSLFDSLLSI 642 >gi|322378745|ref|ZP_08053174.1| flagellar hook-associated protein FlgK [Helicobacter suis HS1] gi|321148775|gb|EFX43246.1| flagellar hook-associated protein FlgK [Helicobacter suis HS1] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 34/396 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 +L+ N + NI NA++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQVMVDVTGNNISNANDPFYSRQRVIATPQSTLMYTNRNMNMGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + + + D + + ++ Sbjct: 63 VQSIQRVHDDFVFARYTRANQEHAFYSTQFDNLREVSSYF-PDMDEVGIHKDLEEYFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN E + ++ + + QN + + V ++ A E+ I + R SE+ Sbjct: 122 KDLAKNAKEPAQKQALVQKTKTLTQNIHDTRARVVALQKKASAELVSTIKEVNRLGSEIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223 +N +K K A++ D+RD L ++ E+IG S N+ V D Sbjct: 182 NINRHLKEMEDPKMLKQANELRDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIKVADFDD 241 Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 G L +I + + F N + +GK+ AL+ Sbjct: 242 GYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEGKVGALM 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 I + + ++ + LD A+ LI S + + + +G + L + Sbjct: 302 GIYNDGSHGTTKGKLQVYVDTLDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEGDEALKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + ++ N Sbjct: 362 TNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMN 397 Score = 99.7 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 54/435 (12%), Positives = 128/435 (29%), Gaps = 10/435 (2%) Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + K M D + ++ + + + Q LKE++ + T+ ++ ++ Sbjct: 177 GSEIANINRHLKEMEDPKMLKQANEL-RDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIK 235 Query: 109 DSL--ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + Y N++ VV+ R Q D ++ ++ Sbjct: 236 VADFDDGYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEG 295 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--SEIIGISTIVRNNNDMVVYTSDG 224 + +K ++D D + + S + +N + V +G Sbjct: 296 KVGALMGIYNDGSHGTTKGKLQVYVDTLDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEG 355 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + +I + ++ I + ++ +I A + Sbjct: 356 DEALKDTNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMNDVIEQINANTDDNNDNNT 415 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + K + IKD + + + Sbjct: 416 TNDFDDY-----FVAHYDNKTKQFTIQPKNASEGLFVSIKDHGSNITGALGLNPFFEGNN 470 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + G D+ N F + +T+ EY Sbjct: 471 ARDIKINEAYRREPTTLRPWLAPIQGNFDVANMMQQLQYDKVDFYQNKFNDKPMTIEEYY 530 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + +G + + + + V + + + GV+ EE+ LIK + Y + K+ Sbjct: 531 QFVVGKIHTEAEHAKNTLDSKEAVLHVVKKEQEAISGVSSDEEMVNLIKFQSGYAANAKV 590 Query: 465 IMFTDKMLQTLLEGV 479 I D+M++TLL Sbjct: 591 ITAIDRMIETLLGIK 605 >gi|297380296|gb|ADI35183.1| flagellar hook-associated protein FlgK [Helicobacter pylori v225d] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVSMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESKNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGESVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESKNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ ++N + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G ++ N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GESVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606 >gi|260752892|ref|YP_003225785.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552255|gb|ACV75201.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 458 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + + + N + I N+ NA Y RRD +S Sbjct: 1 MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 VT + + +S G+ + + + E ++ Sbjct: 61 GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 SL + + N + I + + + SA ++ + E + +S + L Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L VN AI + A DQRD LL +S IGI+ + +N + + S + Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+T + +S+ GV + N + + Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +A + S + A + + + G Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNTWNSQGTTPSGAAGG----------------- 331 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 D +++ + I S + + + + + + + Sbjct: 332 ----DLLTITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + ++ ++N +++ + GV+L E + L++ +Q+YN S K++ Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447 Query: 469 DKMLQTLLEG 478 +Q +LE Sbjct: 448 QTTMQAILEL 457 >gi|90579916|ref|ZP_01235724.1| flagellar hook-associated protein [Vibrio angustum S14] gi|90438801|gb|EAS63984.1| flagellar hook-associated protein [Vibrio angustum S14] Length = 778 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 132/408 (32%), Gaps = 20/408 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + + +Q NI N Y R+ + + Sbjct: 3 SDLMQLGISGLRTSQKQLDVTSHNISNVHTAGYSRQVVDQKAADAQWSGGNYYGSGAYID 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + L ++ + + Q + + ++ N + ++ +S+ S Sbjct: 63 SVNRAYDQFAARELTLSTTQLEASDVRQQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + ++ +TV+++A + ++FN+S + IR D ++++ + + + E+ + Sbjct: 121 LSDHPNDLGSRQTVLEHANQAAKSFNSSHEMLTNIRRDVNEQLGVTLDRVNALGQEIAAI 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232 N +++ HD LD++ L+ ++++ ++ + + V G TL V Sbjct: 181 NTSLQEM-PDGDQNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + G + A+L IRD V+ +++ Sbjct: 240 SSQLKMVNGDPDLEDKQIALINGNQAKPIKSDDI--GGGLGAMLSIRDDVIDKSLDEMGR 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G + + N + + Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAIGSALFSDV----NSPTLVKERVLKPLGSQTDIDVKID 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 D ++ G + + N+ D A I++ TL Sbjct: 354 DVNALKTGDYELTTEFDGTDYSFRLFDPAGNEMKKPDGSALISSTDTL 401 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/390 (9%), Positives = 92/390 (23%), Gaps = 5/390 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 ++ L + L+ + + + R I + Sbjct: 389 PDGSALISSTDTLPVEVNVDGLTLTMNTVMGNPPATGQSETVIIQPMRRGAANISVEMSD 448 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 L + T + + + + + +++ Sbjct: 449 PRGLAGHRQTALIEANPNNAGTAALTTVTDNTSDAVAGNYQIDIINSADLTATDGTGNTG 508 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPK 269 ++ ++ N I G V+ Sbjct: 509 AAQFDAIKGAAAEAAQGVYTLSLNATGDKISMVDAASNPINLIDATGTPVTELDYPLTTT 568 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G ++ S V + + + Sbjct: 569 GNTLTMVASDGSQVSVATLGAGAAVGDSFTLNITTSDKLTVKNTQTNTLVDLDDGSGNPV 628 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 T + + + + + N G + + I Sbjct: 629 QALAYPLTNANKEITFAGQATPTFSLTDNGQAGDNFTVSLGRSSAVGGNSNFLAMQQIQH 688 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 ++++ + +S++ +Q+ F+ SE SN GVNL EE + Sbjct: 689 EKTMNEGKSSVIDLFEGLATDIGMMKSNADKTAEVNQLDFDAASERVSNLSGVNLDEEAA 748 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ +QSY S++++ + TL+ V Sbjct: 749 NLMNFQQSYMASSRIMSVAKETFDTLMRAV 778 >gi|322380594|ref|ZP_08054746.1| flagellar hook-associated protein FlgK [Helicobacter suis HS5] gi|321146916|gb|EFX41664.1| flagellar hook-associated protein FlgK [Helicobacter suis HS5] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 34/396 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 +L+ N + NI NA++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQVMVDVTGNNISNANDPFYSRQRVIATPQSTLMYTNRNMNMGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + + + D + + ++ Sbjct: 63 VQSIQRVHDDFVFARYTRANQEHAFYSTQFDNLREVSSYF-PDMDEVGIHKDLEEYFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN E + ++ + + QN + + V ++ A E+ I + R SE+ Sbjct: 122 KDLAKNAKEPAQKQALVQKTKTLTQNIHDTRARVVVLQKKASAELVSTIKEVNRLGSEIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223 +N +K K A++ D+RD L ++ E+IG S N+ V D Sbjct: 182 NINRHLKEMEDPKMLKQANELRDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIKVADFDD 241 Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 G L +I + + F N + +GK+ AL+ Sbjct: 242 GYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEGKVGALM 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 I + + ++ + LD A+ LI S + + + +G + L + Sbjct: 302 GIYNDGSHGTTKGKLQVYVDALDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEGDEALKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + ++ N Sbjct: 362 TNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMN 397 Score = 99.7 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 54/435 (12%), Positives = 128/435 (29%), Gaps = 10/435 (2%) Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + K M D + ++ + + + Q LKE++ + T+ ++ ++ Sbjct: 177 GSEIANINRHLKEMEDPKMLKQANEL-RDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIK 235 Query: 109 DSL--ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + Y N++ VV+ R Q D ++ ++ Sbjct: 236 VADFDDGYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEG 295 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--SEIIGISTIVRNNNDMVVYTSDG 224 + +K ++D D + + S + +N + V +G Sbjct: 296 KVGALMGIYNDGSHGTTKGKLQVYVDALDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEG 355 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + +I + ++ I + ++ +I A + Sbjct: 356 DEALKDTNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMNDVIEQINANTDDNNDNNT 415 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + K + IKD + + + Sbjct: 416 TNDFDDY-----FVAHYDNKTKQFTIQPKNASEGLFVSIKDHGSNITGALGLNPFFEGNN 470 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + G D+ N F + +T+ EY Sbjct: 471 ARDIKINEAYRREPTTLRPWLAPIQGNFDVANMMQQLQYDKVDFYQNKFNDKPMTIEEYY 530 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + +G + + + + V + + + GV+ EE+ LIK + Y + K+ Sbjct: 531 QFVVGKIHTEAEHAKNTLDSKEAVLHVVKKEQEAISGVSSDEEMVNLIKFQSGYAANAKV 590 Query: 465 IMFTDKMLQTLLEGV 479 I D+M++TLL Sbjct: 591 ITAIDRMIETLLGIK 605 >gi|317178579|dbj|BAJ56367.1| flagellar hook-associated protein FlgK [Helicobacter pylori F30] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTVAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 50/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201 + ++ +D I++ +++ + K D++D D + + Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLDVYNDGSNGTLKGKLQDYIDLLDSFARGL 330 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 E ++ + G + N + + DG ++ Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 386 KTVAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 +KD + SN S ++ + + G D+ N Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + F + + E+ + G + + S + + + I + + Sbjct: 506 QLQYDSVDFYNDKFDVKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|317182372|dbj|BAJ60156.1| flagellar hook-associated protein FlgK [Helicobacter pylori F57] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 60/485 (12%), Positives = 133/485 (27%), Gaps = 45/485 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIV--------------RNNN 215 +N IK +K A++ D+RD L + E++G + + Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLIDKDSADFDE 241 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + G + + K + D V +N + +GK+ AL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKV-TNITDKLNQGKVGAL 300 Query: 276 LQIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 L + + + + + LD A+ LI S + + + + + Sbjct: 301 LDVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDEAFK 360 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + + Y ++ + + + D+ +N Sbjct: 361 DTNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDF 419 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVN 443 D N T + S + + + ++ Sbjct: 420 DDYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNIS 475 Query: 444 LQEEL 448 L +E Sbjct: 476 LNKEY 480 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T+ + + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTNSLIDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTLKGKLQDYIDLLDSFAK 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|330875990|gb|EGH10139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 686 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 50/417 (11%), Positives = 128/417 (30%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKIDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ + N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENYGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 43/147 (29%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G ++ AG D N + V Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|315657526|ref|ZP_07910408.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491998|gb|EFU81607.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 688 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 91/327 (27%), Gaps = 34/327 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R + D L + + E S D+ S + + Sbjct: 63 GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIES-SMDELGRMSVSDSMRT 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + N + + AE +V N T + + + ++++ +++L Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + +ND I+ T S +A D+RD L+ IS++ G + Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQ----------- 230 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALLQIRD 280 G +++ +Y + + + +V +G + + Sbjct: 231 -GYSVYTKENAPHPSMIGQAYEDGTVEVMLGGNSLVGKDYVNHFEVEGARDMAGIDAAPR 289 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPI 307 + L + Sbjct: 290 DKYKAAVDALKAKFPTNWNDTFDYHGQ 316 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 Y + + + + + + S+ + + + D H ++ Sbjct: 581 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 640 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V++ EE+ LI+ + +Y + +++ + ML+ L+ + Sbjct: 641 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 688 >gi|264676570|ref|YP_003276476.1| FlgE [Comamonas testosteroni CNB-2] gi|262207082|gb|ACY31180.1| FlgE [Comamonas testosteroni CNB-2] Length = 422 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/483 (9%), Positives = 113/483 (23%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 F + + N AS+ I NI N++ + + V Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 S ++ + + + + F +K+ + E Sbjct: 62 ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 K + D + V+D + +Q+ T + +++ + T Sbjct: 116 KTVDNDNVMGYVVDPSTGKIQSGATPVPMSFPTGQPIPAKQTSKVNVELNLDARATAAAG 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + I ++ + T + +F ++ Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNVFNSLDATA 230 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + S Sbjct: 231 TPIGKAVFDASGKLTSVTPNAPTTGSGTT------------------------------- 259 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L ++ G + + ++ Q+ + + Sbjct: 260 -------------------LNLSVSGGTANPNGLQPFNVAFDFGGLTQFGTKFAVSSLKQ 300 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L N W+ + Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F + V+L EL ++ ++SY + + I D++ TL Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418 Query: 476 LEG 478 + Sbjct: 419 VNL 421 >gi|317180851|dbj|BAJ58637.1| flagellar hook-associated protein FlgK [Helicobacter pylori F32] Length = 606 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTANFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 48/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ +F+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTANFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISTIDRMIDTLLGIKQ 606 >gi|289578425|ref|YP_003477052.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] gi|289528138|gb|ADD02490.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] Length = 413 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/478 (8%), Positives = 108/478 (22%), Gaps = 65/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + + +S + S + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + D + + + + + A + Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISIKNWSSIAPAATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ I+ + N + T R S Sbjct: 173 IGGN--------------LNASTEINGSISYNILVYDSQGGSHIATLTFTRTDASTWDWS 218 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + ++ + Sbjct: 219 VSSSDPAISSVDGSGTLTFGADGKI----------------------------------- 243 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + N + + + S + ++ Sbjct: 244 ------APNTTATGTLTFNMNTNETNATIGPVQLDLSQLTMFSSETDLRELSKNGNEAGS 297 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 298 LESINIDKYGVVSGIYSNGRKQIIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + K+I +D+MLQ L+ + Sbjct: 356 AAGTGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVNMKR 413 >gi|319409169|emb|CBI82813.1| Flagellar hook protein FlgE [Bartonella schoenbuchensis R1] Length = 403 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 46/488 (9%), Positives = 124/488 (25%), Gaps = 93/488 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56 MS+ + + N + + + N+ N + Y R D + S + V Sbjct: 1 MSIYGMMRTGVSGMNAQGTRLSGVAENVANVNTIGYKRTDVQFSNYVIPSGDYAYVPGGA 60 Query: 57 SEN---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 A F + + + Sbjct: 61 RSYVGHDISISGPARATGRMGDVMIDGNGFFRVAD------ENGIEYLTRAGSFSRDKDG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y +NL+ L +E Q + +I+ +++ Sbjct: 115 YVRNLAGYYL-------LDEDGQRVQIKGGPTDLFGPEVTTKIDFKVN------------ 155 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 +E + + + N+ T +++ + Sbjct: 156 ------------------------FDASAEALDVHGDIDPNDPESYNHKKSVTTYDSQGK 191 Query: 234 DINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 I + T ++ ++ G V + G +K + +P + Sbjct: 192 KIQVDFYMRKTDDNKWTVDAYVGGEKVGTTDLVFDKDGNLKDPVDDFTLTLPENDGEDGT 251 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + KD + N S Sbjct: 252 FEVAVNLGGVGKDSLVT----------------------------------QVGNLSAFE 277 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ ++ Y + + + + + + +L + + G Sbjct: 278 LEADGMESGAFDGFTFGRNGEIEVRYTNHQMRVVGYVGMTTVTSPESLTVLSGSVFGT-- 335 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +R+ + VF + Y V + +EL+ +I+ +++Y ++K+ +++ Sbjct: 336 NSRTGGQMMGRPGDGVFGLLFSGYLEDSNVEMSDELTDMIEAQRNYTANSKVFQTGSELM 395 Query: 473 QTLLEGVK 480 ++ + Sbjct: 396 DVIVNLKR 403 >gi|304390261|ref|ZP_07372215.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326743|gb|EFL93987.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 687 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 20/234 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R + D L + + E D+ S + + Sbjct: 63 GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIESAM-DELGRMSVSDSMRT 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + N + + AE +V N T + + + ++++ +++L Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNND 216 + + +ND I+ T S +A D+RD L+ IS++ G + + Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVY 235 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 Y + + + + + + S+ + + + D H ++ Sbjct: 580 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 639 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V++ EE+ LI+ + +Y + +++ + ML+ L+ + Sbjct: 640 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 687 >gi|292489133|ref|YP_003532020.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292900252|ref|YP_003539621.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291200100|emb|CBJ47226.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291554567|emb|CBA22181.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312173291|emb|CBX81546.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 410 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 111/476 (23%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--KNMF 63 F++ + N A+ + NI N+ + + + +N Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKSGSIGFADIFAGAQGMGVQVAGSGQNFK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D L + F L + + + + Y NL+ + Sbjct: 62 DGGLTGTGRNLDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + +Q + Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + S + T + + +S F+++ + Sbjct: 143 GMPPVASTSGKLNGNLTASSEVITKTPFDHTDADTFNSSSQIEAFDSLGNRHTIDIYYVK 202 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T T E D ++ Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELAIT 235 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362 D + + + L+ + + Q+ S+ S Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + +A L + N W+E +S + Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L E+ +I +++Y +++ I +MLQTL+ Sbjct: 354 TAGSGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409 >gi|188576756|ref|YP_001913685.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576947|ref|YP_001913876.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521208|gb|ACD59153.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521399|gb|ACD59344.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 407 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 38/476 (7%), Positives = 106/476 (22%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + + A+ NI N + + ++ + R+ + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + ++ S + + Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ +++ G +++++ Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + + + AL + ++ Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTAPANGIIA------------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + QY + Sbjct: 250 -----------------MTPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y + +K ++ L N W E S + Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNV--WAESYTSGAARTS 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 APNTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406 >gi|83814503|ref|YP_446705.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294508641|ref|YP_003572700.1| flagellar hook protein FlgE [Salinibacter ruber M8] gi|83755897|gb|ABC44010.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294344970|emb|CBH25748.1| Flagellar hook protein FlgE [Salinibacter ruber M8] Length = 432 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 45/480 (9%), Positives = 122/480 (25%), Gaps = 48/480 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + + + + ++ NI N+ + R+ + + R+ Sbjct: 1 MSLQS-LSIGVSGLRSHQTRLDTVSNNIANSSTTAFKRQRAAFSEELGQAILGVGRTAG- 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + S ++ S + ++ D + S Sbjct: 59 --------GSNINPSKVGRGVSVASIDRNFSQGSLNDTGIKTDLALNGDGFF-VASPKSG 109 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + A N + Sbjct: 110 AASDQRRLTRAGNFT-----------------------------------FNQNGELVTA 134 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + ++ + G + D + Sbjct: 135 NGLNVQGWEVGEDGTANTGELKNVQFDPNAQSAAKATTEAQVGGNLSADAEAGDTSEISS 194 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Y +++ + I+ S + + + L + + S Sbjct: 195 VVYDEQGKAHNVVINFENTSEDTWTFSVEDPDGVLQDANGGGPGDANGTITFKDDGSVDS 254 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 S N ++ + + + + ++ Q+ + + G + + Sbjct: 255 ISGMTNAYDPDGNGTNDGVSLDWTNDAVQGGKSLGISLRDITQFSGSTTSKFQGQNGNSS 314 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + L +Y + + + +N L + N S Sbjct: 315 GELSGVQFTPEGKLQLNYTNGVQEEEYQLAIGDVNNPNGLEQQGENFFTTTG--ASGDLQ 372 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L + + + + V+L +E S LIK ++SY S+++I D++L ++ + Sbjct: 373 LGRAGRDLQTSVVSGALESSNVDLAKEFSDLIKAQRSYQASSQIITTADEVLNQTVQLKR 432 >gi|289651639|ref|ZP_06482982.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. 2250] Length = 686 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVIGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ N + +A T+ + Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + D S + + + + V Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T +G + V D + + + G + +R Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480 Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 +++ +L ++ + S++ + + G ++ I + + Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAVKLSIGY 540 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393 +F + + ++ + ++ + V Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTN 600 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 +L + + + S V + + GV+L EE + LIK Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I + TL+ + Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|298345981|ref|YP_003718668.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 43063] gi|298236042|gb|ADI67174.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 43063] Length = 687 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 20/234 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R + D L + + E D+ S + + Sbjct: 63 GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIESAM-DELGRMSVSDSMRT 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + N + + AE +V N T + + + ++++ +++L Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNND 216 + + +ND I+ T S +A D+RD L+ IS++ G + + Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVY 235 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 Y + + + + + + S+ + + + D H ++ Sbjct: 580 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 639 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V++ EE+ LI+ + +Y + +++ + ML+ L+ + Sbjct: 640 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 687 >gi|260574380|ref|ZP_05842384.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] gi|259023276|gb|EEW26568.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] Length = 435 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 52/491 (10%), Positives = 119/491 (24%), Gaps = 67/491 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53 M++ + + N + + ASI NI N+ Y R T + Sbjct: 1 MTISSALSAGVAGLNANATRLASISDNIANSGTYGYKRASTDFESMVITQAAGAGTYSAG 60 Query: 54 TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRD 109 R+ + D+ L + S+A+ + + + D N R Sbjct: 61 GVRASTTRLIDERGALVSTSNALDLAVSGRGMLPVSATAGLGTDLAGTNLMMTTTGSFRP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + S +L + + + + + +++++ + ++ ++ Sbjct: 121 DANGVLRTQSGLVLLGWPANADGTIPVLPRDTIAGLTPVVINSNQQAGDPTTEMKLGVNL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A T F + ++ + +N + Sbjct: 181 PATQTTAGAAGTTLPLSIEYFGNLGTSETLDVTFTPTVPATGSSNEWKMEIRDSAQGGAL 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 I F+ S N I V S G + + + Sbjct: 241 VGEYTIVFD-------DSRGNGGTIASVTTVSGGAYNAADGTLALTVAGGPLTM------ 287 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 DP + + + + Sbjct: 288 ---------TIGKVGDPNGLTQLSDSFAPTSITKNGSPVGNLMEVEVDENGYLTASYDTG 338 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 F R + N+ L + + F++D Sbjct: 339 FTRRLYQIPLVDTPNLNGLIALNNQTYQISPNSGSFFLWD-------------------- 378 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + ++ EL+ LI+ +++Y+ + K+I D Sbjct: 379 --------------AGDGPTGAVVGYSREGSTTDVAAELTNLIQTQRAYSSNAKVIQTVD 424 Query: 470 KMLQTLLEGVK 480 +MLQ + Sbjct: 425 EMLQETTNIKR 435 >gi|329849962|ref|ZP_08264808.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] gi|328841873|gb|EGF91443.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] Length = 474 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 63/489 (12%), Positives = 144/489 (29%), Gaps = 24/489 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 M++ + ++I NI NA+ Y R T T + + N Sbjct: 1 MTINRAMQSGVTALAANASALSTISNNIANANTTGYKRVTTNFTNLVSGTSGTATYASNG 60 Query: 60 -------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 L+A SS Q F + A + + Sbjct: 61 VTAAVQQNMTARGELNAASSGYSLGIDGQGFFVTSDTSDAINQGSTMLFTRDGSFNTDTS 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y +N + L S+ V D + + ++N+ T Sbjct: 121 GYLRNAAGLYLQGW-----------QADSSGTVNPSSTDITRLGPINVANIANRAESTTR 169 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETV 231 V+ +++ D + + + + D V + +L + Sbjct: 170 VSFDANLDSSTDISDAAANGTYDATSATAAMSVYDAAAGIGTKPDSTVSMTVSDSLGQQH 229 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ K + + + V+ + + + L D + + + + Sbjct: 230 TVTMSLLKRGTDAANNTLWDYEVWSPDVT--DTAGLAQLATGTLAFNPDGTLDLAASTTN 287 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + S+ A NS P + G + + + + Sbjct: 288 DATGAPGAFTSDYTIGASNSTAAPRWNNSFGAAGQSLSMGLSGASPTSEITHLAGDSTTT 347 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 R + ++ L + + Y + + +A L + N + Sbjct: 348 RLTANGTEFGLLTKVEIDKDGIVTAIYNNGNTRTLAQVALATFINANGLTPISGN--AFT 405 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 ++S L + +++ + V+L +E + LI +++Y+ ++K+I +D+M Sbjct: 406 VSSQSGGFTLREPGEGGAGNLAPAALEASTVDLAQEFTGLITTQRAYSAASKIITTSDEM 465 Query: 472 LQTLLEGVK 480 LQ LL + Sbjct: 466 LQELLALKR 474 >gi|237755390|ref|ZP_04584017.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] gi|237692431|gb|EEP61412.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] Length = 413 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 109/478 (22%), Gaps = 65/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L F A N Q I NI N + + Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDL--------IAHSLTTF 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + G L + + S N + ++ + N Sbjct: 53 ANNTPKNTEIGGGSFIALTT-----KDFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVY 107 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + N ++Q D I + + + + I Sbjct: 108 YTRAGQFRLNADGDLVNVDGMKLQGWTLDDKGNIIGALDKINVPYAINPTITTKISLVEP 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D S IS + + T+++++ Sbjct: 168 TNLD---------------SRSNVISATFDPTDSTTFNYVNSMTVYDSLGNPHTLSFYFQ 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T S + + V + ++ + V + Sbjct: 213 KTNESSTGSTWKVYVYMDNDLTTQVGSSTL------------------------------ 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + P + + + ++ K Sbjct: 243 NFDTNGNLTSGSP---FTLSLTLTNGATSPQSITVDVSKIKQVASDFIFYANQDGFAKGD 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +A + Y + KN VA L+ N + + Sbjct: 300 LIGVAVAEDGIIKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLY----LPNTQTFTPI 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + + V++ E LI +++Y + ++I D++LQ + + Sbjct: 356 ITPGGILSKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMNIKR 413 >gi|146335607|gb|ABQ23406.1| FlgK [Pseudomonas syringae pv. averrhoi] Length = 686 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ N + +A T+ + Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + D S + + + + V Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T +G + V D + + + G + +R Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480 Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 +++ +L ++ + S++ + + G ++ I + + Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAIKLSIGY 540 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393 +F + + ++ + ++ + V Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQMAKTVGVTN 600 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 +L + + + S V + + GV+L EE + LIK Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I + TL+ + Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|126462484|ref|YP_001043598.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104148|gb|ABN76826.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 423 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 N A + + A A+ NI N + + R Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + A + + Q F A + + + + E + Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + + + SA + ++ ++ ++ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGT 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ D D T + ++ + G + Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + + + G + Q L Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + + T + + G Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +G + Y + L + + G+ Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F I V+L EEL LI +++Y S K + ++ ++QT+ Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418 Query: 476 LEG 478 + Sbjct: 419 MNI 421 >gi|259907634|ref|YP_002647990.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224963256|emb|CAX54740.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|283477476|emb|CAY73392.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 410 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 113/476 (23%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE--NKNMF 63 F++ + N A+ + NI N+ + + + ++N Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGAQGMGVQVAGSSQNFK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D L + F L + + + + Y NL+ + Sbjct: 62 DGGLTGTGRNMDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + +Q + Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + S + T + + +S F+++ + Sbjct: 143 GMPPVASTSGKLNGNLTASAEVVTKTPFDHTDGETFNSSSQIEAFDSLGNRHTIDIYYVK 202 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T T E D ++ + Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELDIK 235 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362 D + + + L+ + + Q+ S+ S Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + +A L + N W+E +S + Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L E+ +I +++Y +++ I +MLQTL+ Sbjct: 354 TAGTGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409 >gi|167770210|ref|ZP_02442263.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] gi|167667532|gb|EDS11662.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] Length = 556 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 47/558 (8%), Positives = 114/558 (20%), Gaps = 86/558 (15%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------------P 47 + Q+ I NI N + + P Sbjct: 1 MYSGVAGMKSHQQRMDVIGNNIANVNTYGFKSSRVTFRDMFYQNIRNASAGTSTRGGVSP 60 Query: 48 ENVTVVTQRSENKNMFDKV-LHAHSSAIGQQRLLQSFEALKE----------MMSADDHY 96 V +Q + + + + + + F +++ M D Sbjct: 61 SGVGYGSQIASIDKLMTQSSMTSTGQPLDCAITGDGFFQVQDSDGNKFYTRAGMLDIDQA 120 Query: 97 NNSPTHYISKLRDSLESYSK-----------------NLSEDILGKTVIDNAEEVVQNFN 139 + + +T+ + + Sbjct: 121 TGYLVDLNGYFVLGTQGPDVIGKAPGNSKIKVELDPLEPAAGSKVQTIQNVEYTLSATNY 180 Query: 140 TSAREVQKIRADADKEIELE-----------------ISNLRRFLSELTVVNDAIKFKTA 182 T+A V + ++ + + + + VN AI Sbjct: 181 TTAGNVNFNFSLDNEMPTGQNIRVVVDGNSIAVKVNPTAQFASLSAFMDEVNKAITDARG 240 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 DG + S Sbjct: 241 GVEHPAGLFTITADPEPAGPLTGEQIVNSDRGPTGGKIVFDGALKTGYAVKSYGSAFSAS 300 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 +T E + + + + +V + G Sbjct: 301 GNLTFEIQRTAPANNTTAPDSADSRYTVTVTGTNAAGQAVTYTMADLTYAQLTNSAGVHL 360 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + L I + ++ + S Sbjct: 361 VNNAAGADPNDSFDLRIPSSFYEKNDNGTPDNPADDTYTFPAAGTALGTATPQTPSGNIG 420 Query: 363 WNVKN--------------------LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 K+ G +I + +A + L + Sbjct: 421 LGSKDFLLEGGTEGGPQSLMNLTGIAIGADGIIRAQNAGKDIIVGRIDLANFDNPQGLDQ 480 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + S + + + S V+L +E S +I ++ + ++ Sbjct: 481 AGNSYFT--ATDNSGKAKYAVPGEDGTGALKNSALEMSNVDLSQEFSDMIVTQRGFQANS 538 Query: 463 KLIMFTDKMLQTLLEGVK 480 +LI +D ML+ L+ + Sbjct: 539 RLITVSDTMLEELINLKR 556 >gi|229524192|ref|ZP_04413597.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426] gi|229337773|gb|EEO02790.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426] Length = 434 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 113/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + S+ Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ D D + ++ ++ Y L + + Sbjct: 157 TANIDLGANLPANGDLKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N + Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + D + Q +S + Q+ + + Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFKLDTATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + ++ F IS +++ +EL LI ++++ +++ + + + Q Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|12620925|gb|AAG61142.1| flagellar hook-associated protein 1 [Helicobacter pylori] Length = 606 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G DL N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDLANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|77463652|ref|YP_353156.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] gi|77388070|gb|ABA79255.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] Length = 423 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 107/483 (22%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 N A + + A A+ NI N + + + V Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + A + + Q F A + + + + E + Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + + + SA + ++ ++ ++ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGT 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ D D T + ++ + G + Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T + + + G + Q L Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ + + T + + G Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGSSYTLDLTETQLADRSFEVNTVSQDG 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +G + Y + L + + G+ Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F I V+L EEL LI +++Y S K + ++ ++QT+ Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418 Query: 476 LEG 478 + Sbjct: 419 MNI 421 >gi|325111107|ref|YP_004272175.1| flagellar hook-associated protein FlgK [Planctomyces brasiliensis DSM 5305] gi|324971375|gb|ADY62153.1| flagellar hook-associated protein FlgK [Planctomyces brasiliensis DSM 5305] Length = 565 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 51/414 (12%), Positives = 133/414 (32%), Gaps = 20/414 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M L A A S +N+ NA++ NYVR + + + Sbjct: 1 MGLTASLYTAGQSLELFSAGIQVAGQNVANANSPNYVRERLLVSTASPYQSGGLLFGTGA 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 R + + +H ++ + + A +++ + N + +++ + Sbjct: 61 QADGIRQQIDKNLESQIHLANADVASANARVNGYAQLQLIVG-ELGENDLSTRLNEFLGA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + V+ E + + ++ + R + + + + ++ Sbjct: 120 MNDVVNQPELPANRQLVVQEGELLANTIQSMRAQIDRARTSINSSLNELVVEANELIQQI 179 Query: 171 TVVNDAIKFKTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I ++ DA +R L +++EII I T+ + N + V++ + + Sbjct: 180 ADLNPQIVRMESAGLLNSDAGGLRTERLTALNRLAEIIPIRTVEQENGIVDVFSGNDYLV 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + V + + +V G++ ++ RD+++ F Sbjct: 240 IQGSTNTLELTREEDRGVAVDQVRF------AKTQHSMSVESGELMGAIEARDNILGGFV 293 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +QLD+ +R L+ ++ + I D L Q + + Sbjct: 294 DQLDQYSRALVFDMNKIHSSGEGTVGYESTTSLYEINDTAAALNQAGLTYTPQHGSFDVK 353 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + ++ L G ++ S + + +T+ Sbjct: 354 VYDKTTDTFKTTTIDIDLDGLGGNDTSLDDLQASLDAIGNLNASIDTTGRLTIT 407 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 40/429 (9%), Positives = 106/429 (24%), Gaps = 15/429 (3%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + R+ + ++++ + I Q L E + + Sbjct: 152 AQIDRARTSINSSLNELVVEANELIQQIADLNPQIVRMESAGLLNSDAGGLRTERLTALN 211 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L + + V + S ++ R + ++ + S Sbjct: 212 RLAEIIPIRTVEQENGIVDVFSGNDYLVIQGSTNTLELTREEDRGVAVDQVRFAKTQHSM 271 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + A + F+DQ D + + + T+ + + Sbjct: 272 SVESGELMGAIEARDNILGGFVDQLDQYSRALVFDMNKIHSSGEGTVGYESTTSLYEIND 331 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T + S ++ + + D+ + Q Sbjct: 332 TAAALNQAGLTYTPQHGSFDVKVYDKTTDTFKTTTIDIDLDGLGG----NDTSLDDLQAS 387 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD + + + F D L + + Sbjct: 388 LDAIGNLNASIDTTGRLTITADTGYDVRFSNDTSNTLAALGINTFFN--------GKDAN 439 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ AG ++ + +L E+ + Sbjct: 440 EISVNSALVDNPNL---LAAGAGGGPGDNSNAIRLANFMEQPLDSLGGFSLDEFYERVVT 496 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + + GV+L EE +++++ Y S ++I + Sbjct: 497 QVAEGASAESAIASGFTSFQASLLGQRQQISGVSLDEEAIRILEMQHGYTASARIISTLE 556 Query: 470 KMLQTLLEG 478 ++ TL+ Sbjct: 557 ELFNTLVNL 565 >gi|152990394|ref|YP_001356116.1| flagellar hook-associated protein 1 FliK [Nitratiruptor sp. SB155-2] gi|151422255|dbj|BAF69759.1| flagellar hook-associated protein 1 FliK [Nitratiruptor sp. SB155-2] Length = 596 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 63/444 (14%), Positives = 143/444 (32%), Gaps = 6/444 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-VTQRSENKN 61 + N + + NI N + + Y R + + P T+ + Sbjct: 11 MANALNNISQTLLQNQKAIDIVNNNIANLNTEGYSRVEAGFSSLPTGGTLLSEAKRVFDK 70 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + + L S E + D + I + +SL + + Sbjct: 71 NYFVRMINTNQEKSYYENLNSTLNQLESLFKDSL-GGGFSKQIDEFYNSLNDVISSPDDL 129 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + K+ + A+ +V + + + + + + +T +N IK+ Sbjct: 130 VARKSFLTTAKMLVGRVRSVSEGMNDLGGLVKNSFRETVMQINNLARRITDLNKNIKYFA 189 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + +LDQRD ++K+S +I I + NN + + T+ G L + N Sbjct: 190 NDQTKLNSYLDQRDQAIKKLSSLIDIKVLYHQNNTVDISTAKGHMLVLQDKATPIQTRTN 249 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV-PIFQNQLDEMARVLIGS 300 T+ + + + + + I L +D +QN+ I S Sbjct: 250 KITMVNSYAVAPANTLSSPKDVITDPGTLTINYKLDGKDKSFSVDYQNRSLLDIAAEINS 309 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 S+ + + Q +I + + + + + K+ Sbjct: 310 QSDDLKANVVNVGDQTNPDYRLTISTTMQNVQNEIVSIEDSDANDTTGFDINNSNEIYKQ 369 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSH 419 ++ L+G DL N + + I + + ++ + +R+ + Sbjct: 370 NYATLRVLSGSVDLTNLFQYGKIASLIKSQSLINQALYNVNRFTQDFAYQINSVHRNGYN 429 Query: 420 DLHMKSQVVFNHISESYSNTVGVN 443 + +F ISE N +GV+ Sbjct: 430 LDNETGLDLF--ISEQSGNGLGVD 451 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 54/444 (12%), Positives = 144/444 (32%), Gaps = 14/444 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYN 97 R+T+ I+ + K + +S + + ++ +L ++ + + Sbjct: 165 RETVMQINNLARRITDLNKNIKYFANDQTKLNSYLDQRDQAIKKLSSLIDIKVLYHQNNT 224 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + + V A ++ + Sbjct: 225 VDISTAKGHMLVLQDKATPIQTRTNKITMVNSYAVAPANTLSSPKDVITDPGTLTINYKL 284 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + D + D + + IST ++N + Sbjct: 285 DGKDKSFSVDYQNRSLLDIAAEINSQSDDLKANVVNVGD-QTNPDYRLTISTTMQNVQNE 343 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 +V D D +N+ + N + + S + + GKI +L++ Sbjct: 344 IVSIEDS------DANDTTGFDINNSNEIYKQNYATLRVLSGSVDLTNLFQYGKIASLIK 397 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + ++ ++ + + N +N GL + + + + Sbjct: 398 SQS-LINQALYNVNRFTQDFAYQINSVHRNGYNLDNETGLDLFISEQSGNGLGVDATNIR 456 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + ++ + + K G + +S + D + G+ Sbjct: 457 LNFEDPEKLAAGTKQNMPADNTLAKAIEKTKDGTISYFDSATNSLQEYEQPDFLDGL--- 513 Query: 398 VTLLEYARN-SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T ++ + + + + D + ++FN ++E + GVNL EEL L ++++ Sbjct: 514 -TYNDFYNSKIVSDIAFEAEYTKDRLDDTTLLFNTLNEKIEDISGVNLDEELVKLTQLQR 572 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 SY + +++M TD++ +TL+E + Sbjct: 573 SYQATARVMMVTDELFKTLIEMTR 596 >gi|222824502|ref|YP_002576076.1| flagellar hook protein FlgE [Campylobacter lari RM2100] gi|222539723|gb|ACM64824.1| flagellar hook protein FlgE [Campylobacter lari RM2100] Length = 541 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 55/548 (10%), Positives = 117/548 (21%), Gaps = 77/548 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENV 50 + F N + S + NI N + + D + Sbjct: 1 MFTAFYNGVNGVKSQSYGIDNTAHNISNVNTVGFKYSDVAFKDVFYSTVTTQSYNKGQTG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + N L A + F + N R Sbjct: 61 YGSVAGATNDVFEQGPLVATDHEFDVAIAGKGF-------FGVSNGNGIYYTRNGAFRPD 113 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI------ELEISNLR 164 + + + + T+ + +E+ + S Q++ I +I + Sbjct: 114 ANGNLVDANGNYVLGTMNPSLQEIQLSDRVSNIFGQQLGQKVTTAITGKPNENFQIGGVN 173 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL----QKISEIIGISTIVRNNNDMVVY 220 N + + LD + + ++ Sbjct: 174 TQGPISVPKNLYLPPQPTQNITWSGNLDTSTKTEAVKVDVDASKFNFTKNEDGTVNISGS 233 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-------------- 266 D I F + + + + + Sbjct: 234 VKDEQVFGLKPGDTIYFTIKDEKGASETLQATLDENLAFNIENKKIDKIDLENAKLESSH 293 Query: 267 ------------------VPKGKIKALLQIRDSVVPIFQNQLDE---------------- 292 P G + D V+P L+ Sbjct: 294 LSVEKEVADSSELSAKLINPDGSTSWVKVKLDRVLPQNGTNLEYKAVAQVYDNDGNKIGG 353 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 LI I +V I + + + Sbjct: 354 TTEGLITFNESGALIGNTLTSVDNNGTKVNINLGSFYDPNKPNSGYDGLHALPNKKPSVH 413 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + N + +I + + + L + N G Sbjct: 414 TQTDGKGEGFLNNYAINTDGTIIATFTNGEQIPMAKLALFNFTNEQGLEKLGENLYGQTG 473 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + L SY V+L + LI ++++Y+ S+K I D+M+ Sbjct: 474 NSGNPTFLLDANGNFSTATFKGSYLEQSNVDLSVAFTNLITLQKAYDSSSKSITTADQMI 533 Query: 473 QTLLEGVK 480 Q + + Sbjct: 534 QKAINMKR 541 >gi|261838448|gb|ACX98214.1| flagellar hook-associated protein 1 [Helicobacter pylori 51] Length = 606 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASFFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPMEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIVQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPMEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIVQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDVKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|289627770|ref|ZP_06460724.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866430|gb|EGH01139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 686 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 ++ N + +A T+ + Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + D S + + + + V Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T +G + V D + + + G + +R Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480 Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 +++ +L ++ + S++ + + G ++ I + + Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAVKLSIGY 540 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393 +F + + ++ + ++ + V Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTN 600 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 +L + + + S V + + GV+L EE + LIK Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I + TL+ + Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|28869148|ref|NP_791767.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato str. DC3000] gi|213967575|ref|ZP_03395723.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato T1] gi|301385720|ref|ZP_07234138.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato Max13] gi|302060067|ref|ZP_07251608.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato K40] gi|302134826|ref|ZP_07260816.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852388|gb|AAO55462.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato str. DC3000] gi|213927876|gb|EEB61423.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato T1] gi|331017018|gb|EGH97074.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 686 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 51/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSSFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ + N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFNDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLKGNALAA 413 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 43/147 (29%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G ++ AG D N + V Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAIVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|302134834|ref|ZP_07260824.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 441 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 50/479 (10%), Positives = 106/479 (22%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E + N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + + ++NL + T+ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATSAITNVANLNSTTALPTL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTAADKNDLTFDSSGNLVVAAPGTVPSDSANIKFNTDGIFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGVPESGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|257484939|ref|ZP_05638980.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci ATCC 11528] gi|49205098|dbj|BAC75962.2| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci] gi|330986475|gb|EGH84578.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011049|gb|EGH91105.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 686 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 42/147 (28%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G + AG D N + V Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|297580843|ref|ZP_06942768.1| flagellar hook protein FlgE [Vibrio cholerae RC385] gi|297534669|gb|EFH73505.1| flagellar hook protein FlgE [Vibrio cholerae RC385] Length = 434 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 113/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + S+ Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ D D + ++ ++ Y L + + Sbjct: 157 TANIDLGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N + Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + D + Q +S + Q+ + + Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFKLDTATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + ++ F IS +++ +EL LI ++++ +++ + + + Q Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|315587007|gb|ADU41388.1| flagellar hook-associated protein FlgK [Helicobacter pylori 35A] Length = 606 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|71733906|ref|YP_275555.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487849|ref|ZP_07005889.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554459|gb|AAZ33670.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157574|gb|EFH98654.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325100|gb|EFW81169.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. glycinea str. B076] Length = 686 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 42/147 (28%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G + AG D N + V Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|320329359|gb|EFW85352.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. glycinea str. race 4] Length = 686 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVNLNGNALAA 413 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 42/147 (28%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G + AG D N + V Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|57238490|ref|YP_179621.1| flagellar hook-associated protein FlgK [Campylobacter jejuni RM1221] gi|57167294|gb|AAW36073.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni RM1221] gi|315058921|gb|ADT73250.1| Flagellar hook-associated protein flgK [Campylobacter jejuni subsp. jejuni S3] Length = 608 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASTQLEYTKYIASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A ++ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|205356101|ref|ZP_03222868.1| putative flagellar hooK associated protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345944|gb|EDZ32580.1| putative flagellar hooK associated protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 608 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A ++ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|157415691|ref|YP_001482947.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 81116] gi|157386655|gb|ABV52970.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 81116] gi|307748332|gb|ADN91602.1| Putative flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni M1] gi|315930976|gb|EFV09951.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 327] Length = 608 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 57/514 (11%), Positives = 145/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + A Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 128/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A + A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|86151883|ref|ZP_01070096.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315124902|ref|YP_004066906.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840991|gb|EAQ58240.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315018624|gb|ADT66717.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 608 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 59/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A D+ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|148925638|ref|ZP_01809326.1| putative flagellar hook-associated protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845648|gb|EDK22739.1| putative flagellar hook-associated protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 608 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 55/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ + + + S D N + + Sbjct: 61 AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.7 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A ++ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|255262922|ref|ZP_05342264.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] gi|255105257|gb|EET47931.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] Length = 422 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/487 (10%), Positives = 117/487 (24%), Gaps = 72/487 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ + N + + A+I NI N+ Y R T + Sbjct: 1 MTISSSLNAGIAGLAANASKLATISDNIANSSTFGYKRAGADFHSLVTGSGNGTYSAGGV 60 Query: 61 NMFDKV-------LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 ++ + L + S+A + + + + R Sbjct: 61 SVTTQRMVDARGSLVSTSNATDLSISGRGMLPVTNRSGVESGDSAMMLTSTGSFRTDSNG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y +L D V + +Q I+ D + + + Sbjct: 121 YLTTSGGLVLMGVPADGDGVVPTFSRDTQAALQPIKID----RTKFVGEPTTSIQLGVNL 176 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 A ++ D L + I+ + N +M Sbjct: 177 PATDAVAGALGSAQELAVEYYDNLGNSENLIVTFTPTGSNEWEMAFSDPS---------- 226 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + D + S + G+I+ + Sbjct: 227 --LTTYTLLFDDSRSNGGALADIMDSSGASIATSFTGEIELTMDA--------------- 269 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + S +K + I + + + D Sbjct: 270 ------GPISVNIGELGSGGGLSQLGGTFAPTSISKNGSPVGNMISIEVNEKGIVQGIFD 323 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ + + ++ L +F+ + Sbjct: 324 TGTTRALYQVPIVDVPNPNGLKAGNQQTFSIS---------------------------- 355 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S S L + ++ EL+ LI+ +++Y+ + K+I D+MLQ Sbjct: 356 QNSGSFYLWDAGAGPVGDVVSYAREESTTDVAAELTQLIQTQRAYSTNAKVIQTVDEMLQ 415 Query: 474 TLLEGVK 480 + Sbjct: 416 ETTNIKR 422 >gi|261211322|ref|ZP_05925610.1| flagellar hook protein FlgE [Vibrio sp. RC341] gi|260839277|gb|EEX65903.1| flagellar hook protein FlgE [Vibrio sp. RC341] Length = 434 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + S+ Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ D D + ++ ++ Y L + + Sbjct: 157 TANIELGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N + Sbjct: 217 TWQTYYTVTDKTGEKPVNVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + D + Q +S ++ Q+ + + Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFSLDSATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + ++ F IS +++ +EL LI ++++ +++ + + + Q Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|221069322|ref|ZP_03545427.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] gi|220714345|gb|EED69713.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] Length = 422 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 44/483 (9%), Positives = 110/483 (22%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55 F + + N AS+ I NI N+ + + V Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSSTTGFKASRADFAEMIASAIGSASGQSSGIGVNV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + + + + F +K+ + E Sbjct: 62 AAVSQQFRQGSITSTGNNLDLAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 K + D + V+D +Q+ T + ++ + T Sbjct: 116 KTVDNDNVMGYVVDPTTGKIQSGATPVPMSFPTGQPIPAKQTSTVNVELNLDARATDAAG 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + I ++ + T + +F ++ Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNIFNSLDASA 230 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + S + Sbjct: 231 TPIGTAVFDASGKLTSVTPNAPTTGSGTTLDLS--------------------------- 263 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 I+ G + + ++ Q+ + + Sbjct: 264 -----------------------ISGGTANPNGLPAFDVAFDFGGLTQFGTKFAVSSLKQ 300 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L N W+ + Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F + V+L EL ++ ++SY + + I D++ TL Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418 Query: 476 LEG 478 + Sbjct: 419 VNL 421 >gi|262404540|ref|ZP_06081095.1| flagellar hook protein FlgE [Vibrio sp. RC586] gi|262349572|gb|EEY98710.1| flagellar hook protein FlgE [Vibrio sp. RC586] Length = 434 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 43/484 (8%), Positives = 116/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + SY Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDKMVPQQNE---LTRNGAFHLDKNSY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D+ + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ D D + ++ ++ Y L + + Sbjct: 157 TANIDLAANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMTQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N ++ Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDATSPKGHVGHT------MKFNNDGTLASLNNGQPIVS 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L + D ++ Q +S ++ Q+ + + Sbjct: 271 EALGAGANPVDLNGADA-------------------TQTLSFSLDNATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F +S +++ +EL LI ++++ +++ + +++ Q Sbjct: 370 FSGDKIWGESNKGSFGSVSNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|253998482|ref|YP_003050545.1| flagellar hook-associated protein FlgK [Methylovorus sp. SIP3-4] gi|253985161|gb|ACT50018.1| flagellar hook-associated protein FlgK [Methylovorus sp. SIP3-4] Length = 647 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 56/407 (13%), Positives = 134/407 (32%), Gaps = 14/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N ++ N A + NI NA + Y R+ + + + V Sbjct: 3 SDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + K ++ + + S + M AD + + + DS++ Sbjct: 63 SIERVYSALLAKQVNVSQARSSELSTYSSQISSINNMLAD--SSAGLSPALQDFFDSVQD 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + ++ ++E + F + + + ++ + ++ S + + ++ + Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180 Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ND+I A+ +D +DQRD+L+ K+S I + + N+ V+ +G L Sbjct: 181 NDSINNAMGATGKTPNDLMDQRDLLVSKMSSQIKTTIVQSGNSY-NVFVGNGLPLVVDKE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + T G ++V G + L+Q R+ + +NQL + Sbjct: 240 SYSLSVVNSPTDSTRLEVAYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQLGQ 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L +F+ + + + G+ + I + ++ Sbjct: 300 IAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTS 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D N+ + + V+ + Sbjct: 360 DYTLTYNGGTNYSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSG 406 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/336 (8%), Positives = 76/336 (22%), Gaps = 4/336 (1%) Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + D ++ + + + + Sbjct: 311 QQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTSDYTLTYNGGTN 370 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 S ++ YTS T+ + + + + VS Sbjct: 371 YSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSGDNFLIQPTADAARQISVSITGTDQ 430 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLD----EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + + + L M + + + N A Sbjct: 431 IAAASPLIAAKSSSNTGSGAISNLTVNSAYMGSPFSSALTLTYNSGTGTLNGFPATEAVT 490 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 +K + + + L + + Sbjct: 491 VKTSSGTTTTYAAGAAVPYTAGATYTVAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNA 550 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + ++ N + + + S+ + + GV Sbjct: 551 LLLAKLQTASTVSGNKSYEAAFAQIVSAVGNKTSELQVTGAAEATLLEQAQAEMESNSGV 610 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 NL EE + L++ +QSY + K++ +M TL+ Sbjct: 611 NLDEEAANLLRYQQSYQAAAKVMQIASQMFDTLINI 646 >gi|302669847|ref|YP_003829807.1| flagellar hook-associated protein FlgK2 [Butyrivibrio proteoclasticus B316] gi|302394320|gb|ADL33225.1| flagellar hook-associated protein FlgK2 [Butyrivibrio proteoclasticus B316] Length = 615 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 55/440 (12%), Positives = 128/440 (29%), Gaps = 16/440 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S N A + ++ + NI NA+ Y R+ S Sbjct: 3 SQFFGLNIAASGLRASNASLNTTANNIANANTDGYSRQKVTQAASNALRVFATYGCAGAG 62 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + +D + +G + L E DD N+ + +K+ Sbjct: 63 VDTLAIDRVRDSFYDVKFRNNEQLLGNASQKNYYNQLVEKYL-DDDGNSGFSTLFNKMEA 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 SLES T I + V + FN +Q +AD + EI+L + E Sbjct: 122 SLESVMTAAGTTETKSTYISQLKSVTEYFNNVYNNLQNEQADINAEIKLCADRISSIAQE 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + VN I + A++ D+RD ++ ++S+++ I T D + Sbjct: 182 IASVNKQINVIEMTGAKANELRDKRDTMVDELSKMVSIETKETPVIDENNPSRVTGATRY 241 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + ++E +++Y + + D + +D + Sbjct: 242 QIWIAGSYELVDTYDF-RKMICVARDEDGSTDQNDIQGLFDIKWGYGSYKDGDNVNELSD 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++++ G + + + + + +++ + Sbjct: 301 FTLDSQLIGGELQGLLAMRDGNNGQYFHGKSANAEWVGDQMVVTVEVDATYLKDMTKCT- 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + G++ + Y + + P G + + Sbjct: 360 -IPKEGNIHIGPKDYKYDSWTYNGDSTYTFVIDKETLTSVPDVGRGVQIGYANSYQGIPY 418 Query: 410 WLEKNRSDSHDLHMKSQVVF 429 ++ + + + Sbjct: 419 YMAQMNEWLRQFSDATNEIM 438 Score = 83.5 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 7/356 (1%) Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + E+ + N + ++ L F + ++ ++ A Sbjct: 259 KMICVARDEDGSTDQNDIQGLFDIKWGYGSYKDGDNVNELSDFTLDSQLIGGELQGLLAM 318 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + + + + T+ + + T + K +S+ Sbjct: 319 RDGNNGQYFHGKSANAEWVGDQMVVTVEVDATYLKDMTKCTIPKEGNIHIGPKDYKYDSW 378 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T +S F+ ++ +I +P + Q++E R + +E Sbjct: 379 TYNGDSTYTFVIDKETLTSVPDVGRGVQIGYANSY--QGIPYYMAQMNEWLRQFSDATNE 436 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 S+++ G+ I G D N L Q E + + + +V+ L Sbjct: 437 IMVNGYTSDSLEGINILTGTMD-TNSLAQYSYEQLTTLSENKGYYFLTGGNFAVNAVLLD 495 Query: 364 NVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N LA D+ + + + +FD + E+ + + N+S+S+ Sbjct: 496 NADRLATKADVTEGESEFMNLKKLKEMFDTKKIFRGATS-GEFLTKVLADVALNKSNSNT 554 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L + + N I + GV+ EE S L+K + +Y +S+K+I ++ L+ Sbjct: 555 LEETYKSLENTIDNQRLSDSGVDEDEEASNLVKYQNAYALSSKMIQTLSEIYDRLI 610 >gi|109947182|ref|YP_664410.1| flagellar hook-associated protein FlgK [Helicobacter acinonychis str. Sheeba] gi|109714403|emb|CAJ99411.1| flgK [Helicobacter acinonychis str. Sheeba] Length = 606 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 58/431 (13%), Positives = 124/431 (28%), Gaps = 35/431 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + S D S + +S Sbjct: 63 IEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLIDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNDNEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNKDNNAENDFD 420 Query: 389 DPVAGINTNVT 399 D N T Sbjct: 421 DYFTASFNNET 431 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 102/340 (30%), Gaps = 6/340 (1%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHNIEGEPVEFNDNEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ ++ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNKDNNAENDFDDYFTASFNNETKKFIIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + S S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASTISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTSKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|121612872|ref|YP_001001115.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 81-176] gi|87249591|gb|EAQ72550.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 608 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 55/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ + + + S D N + + Sbjct: 61 AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINTSFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510 Score = 89.7 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 128/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A ++ + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINTSFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|124268254|ref|YP_001022258.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261029|gb|ABM96023.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 420 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/483 (12%), Positives = 120/483 (24%), Gaps = 75/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQ---- 55 F + + N AS+ I N+ NA + +V Sbjct: 2 SFQQGLSGLNAASKNLEIIGNNVANASTFGAKSSRAEFGDVYANALNGSGTNMVGIGVNL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + + F + + N + + + E + Sbjct: 62 ATVAQQFTQGNITTTDNPMDLAINGSGFFQVSD------GKNPTMYARNGQFKIDREGFI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L D +V + I+L + + ++ + Sbjct: 116 VNNSGYKLLGYPADGQGVIVPGQAQA--------------IQLPTAGIAPRATDRIAIEM 161 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + A A +D D N + VY + G + T Sbjct: 162 NLDARQAVTTPATGGIDFDD------------PATYNNATSVTVYDAKGQDVALTYYFQK 209 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + VT+ PI +DG + + Sbjct: 210 SGADQWDVYVTANGTPISVDGTGAALPSTT------------------------------ 239 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + P A + GI + QY S Sbjct: 240 -MTFPANGSAPTAPVGAVPINIPATTNAAGGTTLPITGIELDVTSATQYGSGFGVTDMSQ 298 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ ++ Y + +K +A L N W Sbjct: 299 TGYAPGQLSGISIEANGVIMARYSNGQSKPGGQLELANFRNPQGLQPLGNNV--WATTFT 356 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F + ++L EL +I ++ Y + + + D M+QTL Sbjct: 357 SGDPVVGAAGDGNFGVLQSGALEESNIDLTGELVNMITAQRVYQANAQTVKTQDSMMQTL 416 Query: 476 LEG 478 + Sbjct: 417 VNL 419 >gi|68164540|gb|AAY87269.1| predicted flagellar hook-associated protein 1 [uncultured bacterium BAC17H8] Length = 1404 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 55/409 (13%), Positives = 124/409 (30%), Gaps = 21/409 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPE 48 + +F+ ++ N+ Q A +NI N + Y RR S Sbjct: 1 MANLFDIGRSGLNSYRQGLAITGQNIANINTDGYKRRGAELEELSAAKASVLESSQGSGM 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + T R + + S + E + + + + I + Sbjct: 61 GVRIGTIRRAFDEFLLNKARSAIAYSESTSAFASAASQIENILL--PGDANLGNVIGRFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + L+ + + ++ I I+ A++V NF + +++ + E + + + Sbjct: 119 EGLQEIASDPADLIGRTVAIEQAKQVSDNFKQLHSLLDEMKGGLFTQAEHMLDEVNVLTA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 EL +N + + +K + + LD RD L+ K++E + +S + V + Sbjct: 179 ELQRINKQLAAGSQTKAN-NSLLDARDNLIDKLNEYVEVSVSLDKRGAARVILGN----N 233 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 P + EK++S V E++ + + + G L + Sbjct: 234 PNGPALVTPEKVSSLGVEQEASELLFFIEPQAEKILTKRVDGGAVHGLATAYNTAVEVMA 293 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 ++D +A ++ + E G ++ + + Sbjct: 294 EVDGLAFEMVRDINAIHRQGLTLEGEAGGDFFQSLRLDLAASPVNTGDASATLRVLNPDA 353 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + A L+ S N + G Sbjct: 354 ITSQRVKFNYDDDSDMWNGTANDGSLVVKGRHSVAFNGVEITFIGQANQ 402 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 45/482 (9%), Positives = 114/482 (23%), Gaps = 15/482 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63 A + + + + I N + + + S V V + N Sbjct: 932 SAAMSSGNA--SAIATAINTA---ISNNASDGDGGANMSSVASATAVGKVVTLTVNDGTK 986 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 ++L ++ + + + + + + +RD +K + + Sbjct: 987 VEILRDGNT-LSTGAGKVTVNPVTSGGAQKTLDDAYVSPGYELVRDGKNVSAKVQAAGVS 1045 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + N ++ D + + I A Sbjct: 1046 DDSFTVAGTGSASQTNNI--KLTFSEDDTYDFALVFDDKPNSGATSANNKQLDINATVAG 1103 Query: 184 KHDAHDFLDQRDVLLQ------KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + L +S + +S + V R + Sbjct: 1104 GDATAIANAINNALANNFLNGADMSGVASVSVSGNE-VTLTVNDGSKVEFLRIGNRISSG 1162 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + L + D + +F + Sbjct: 1163 TGQITIDPVTLGGSKKTLADAPVITASGKSLVDQRLILSDLPDEELIVFIGDQGAKRVAM 1222 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + A+ S + D Sbjct: 1223 QFDELPEGAPRLMRDIEIRVKDAETNTVEFFDAETQTSIATRTLDAESRTSAVGFDFELD 1282 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + +++ + + +P + + N++ L Sbjct: 1283 GTFDADDKFHISANTSGTGDNRNLQAILDLQNPPSDGRVTGGFQKKFNNAVSRLGAIVQS 1342 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + E+ S GVNL E + LI+ +Q+Y S +++ ++ +TLL Sbjct: 1343 GKIAAESAVSLREASIEAESAYSGVNLDTEAANLIQQQQAYQASARILSTARELFETLLR 1402 Query: 478 GV 479 V Sbjct: 1403 VV 1404 >gi|330967097|gb|EGH67357.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. actinidiae str. M302091] Length = 686 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 50/417 (11%), Positives = 128/417 (30%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ + N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + + + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKATNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 43/147 (29%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T + G ++ AG D N + V Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAIVGLQTAKTVGVT 599 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L + + + S V + + GV+L EE + LI Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686 >gi|315654567|ref|ZP_07907473.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 51333] gi|315491031|gb|EFU80650.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 51333] Length = 681 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/486 (12%), Positives = 133/486 (27%), Gaps = 43/486 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + N A + +NI N + Y R+ Sbjct: 3 STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V + R + D L + + + E D+ S + + Sbjct: 63 GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSAAWKGIESAM-DELGRMSVSDSMRT 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 S + N + + AE +V N T + + + ++++ +++L Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181 Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTI-----------V 211 + + +ND I+ T S +A D+RD L+ IS++ G + Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVYTKENAP 241 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS----SNQGSAV 267 + Y + + + +N + V + ID + Sbjct: 242 HPSMIGQAYEDGTVEVMLGGNSLVGKDYVNHFEVEGARDMAGIDAAPRDKYKAAIDALKA 301 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARV---LIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + +Q + L S K +G+ E ++ Sbjct: 302 GGKNTDTTFEYHGQKIQKYQAHVQRYEVGDKILNPDGSTKTLKSGDPEVGTKYVAFYDME 361 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D+ + + Q + +F++D G ++ +A I + Sbjct: 362 DVQKGTKKLKEAKVEKTEQGFTEFTFMKDEGPARLRWELGGHVVAIEDGTIGGLMQNLKP 421 Query: 385 NFIFDPVAGINTNVTLLE---YARNSIGWLEKNRSD--SHDLHMKSQVVFNHISESYSNT 439 I + E + L + ++++ + + Sbjct: 422 AQFPGVSGTIGSGGAWAETGKLYNDLATNLADEINGIHANNIAEGGTNNTKTLVTKETKF 481 Query: 440 VGVNLQ 445 V+L Sbjct: 482 YKVDLT 487 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 Y + + + + + + S+ + + + D H ++ Sbjct: 574 AAGQYINGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 633 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V++ EE+ LI+ + +Y + +++ + ML+ L+ + Sbjct: 634 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 681 >gi|317177869|dbj|BAJ55658.1| flagellar hook-associated protein FlgK [Helicobacter pylori F16] Length = 606 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIARPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKETSAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDVKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|319403978|emb|CBI77566.1| Flagellar hook protein FlgE [Bartonella rochalimae ATCC BAA-1498] Length = 402 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 38/481 (7%), Positives = 120/481 (24%), Gaps = 80/481 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + N + + + N+ NA Y R + + Sbjct: 1 MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTIGYKRTNVQFS---------------- 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S ++ + + + + Sbjct: 45 -----NYVTPSGQYAYVSGGVKSHIGHDISIGGPARATGRSGDTMIHGNGFFRVADENGK 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + ++ NT+ + + + Sbjct: 100 EFLTRAGSFVRDKDGYLRNTAGYYL--------------------LNEDGEKIQIKGGPT 139 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +A +D + + + T +++ + + + Sbjct: 140 DLFGPEATTKIDFKVNFNPSAKVVEPKDGKIDPEKPETYSQKKSMTTYDSQGKKVQVDFY 199 Query: 241 NSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T ++ + DG V S + + +G + A + +P + E+ G Sbjct: 200 MRKTAENKWVVDAYSDGKKVGSTEFNFDKEGNLIAPTKEFKLTLPDSEGNTFEVNVNFGG 259 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ + N + Sbjct: 260 VGADSLVT------------------------------------QKGNLFAFEGEADGME 283 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ ++ Y + + + V + + +L + ++ Sbjct: 284 SGAFDGFTFGKNGEIEVMYSNQKTRTIGYIGVTTVASPDSLT-FLGGTVFETNSQT-GPQ 341 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + VF +S Y V++ +EL+ +I+ +++Y ++K+ +++ ++ Sbjct: 342 MMGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLK 401 Query: 480 K 480 + Sbjct: 402 R 402 >gi|313200557|ref|YP_004039215.1| flagellar hook-associated protein flgk [Methylovorus sp. MP688] gi|312439873|gb|ADQ83979.1| flagellar hook-associated protein FlgK [Methylovorus sp. MP688] Length = 647 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 56/407 (13%), Positives = 133/407 (32%), Gaps = 14/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N ++ N A + NI NA + Y R+ + + + V Sbjct: 3 SDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + K ++ + + S M AD + + + DS++ Sbjct: 63 SIERVYSALLAKQVNVSQARSSELSTYSSQINSINNMLAD--SSAGLSPALQDFFDSVQD 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + ++ ++E + F + + + ++ + ++ S + + ++ + Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180 Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 ND+I A+ +D +DQRD+L+ K+S I + + N+ V+ +G L Sbjct: 181 NDSINNAMGATGKTPNDLMDQRDLLVSKMSSQIKTTIVQSGNSY-NVFVGNGLPLVVDKE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + T G ++V G + L+Q R+ + +NQL + Sbjct: 240 SYSLSVVNSPTDSTRLEVAYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQLGQ 299 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A L +F+ + + + G+ + I + ++ Sbjct: 300 IAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTS 359 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D N+ + + V+ + Sbjct: 360 DYTLTYNGGTNYSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSG 406 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/336 (8%), Positives = 76/336 (22%), Gaps = 4/336 (1%) Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + D ++ + + + + Sbjct: 311 QQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTSDYTLTYNGGTN 370 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 S ++ YTS T+ + + + + VS Sbjct: 371 YSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSGDNFLIQPTADAARQISVSITGTDQ 430 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLD----EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + + + L M + + + N A Sbjct: 431 IAAASPLIAAKSSSNTGSGAISNLTVNSAYMGSPFSSALTLTYNSGTGTLNGFPATEAVT 490 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 +K + + + L + + Sbjct: 491 VKTSSGTTTTYAAGAAVPYTAGATYTVAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNA 550 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + ++ N + + + S+ + + GV Sbjct: 551 LLLAKLQTASTVSGNKSYEAAFAQIVSAVGNKTSELQVTGAAEATLLEQAQAEMESNSGV 610 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 NL EE + L++ +QSY + K++ +M TL+ Sbjct: 611 NLDEEAANLLRYQQSYQAAAKVMQIASQMFDTLINI 646 >gi|319405421|emb|CBI79040.1| Flagellar hook protein FlgE [Bartonella sp. AR 15-3] Length = 402 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 38/480 (7%), Positives = 117/480 (24%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + N + + + N+ N Y R + + Sbjct: 1 MSIYGMMRTGVSGMNAQGTRLSGVADNVANVGTVGYKRTNVQFS---------------- 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S ++ + + + + + + Sbjct: 45 -----NYVTPSGQYAYVPGGVKSHIGHDISISGPAHATGRSGDVMIHGSGFFRVADENGK 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + ++ NT+ + + + + Sbjct: 100 EFLTRAGSFTRDKGGYLRNTAGYYLLNEDGERIQIKGGPTDLFGPEATTKIDFKANFNPS 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +D D M Y S G + E Sbjct: 160 AKVVESEDGEIDPDDPK------------SYSQKKSMTTYDSQGKKVQVDFYMRKTAENK 207 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +G V S + + +G + + +P + + E+ G Sbjct: 208 WVVDA-------YSNGEKVGSTEFNFDKEGNLIEPTEEFKLTLPDSEGETFEVDVNFGGV 260 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ + N + Sbjct: 261 GADSLVT------------------------------------QKGNLFAFEAEADGMES 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++ Y + + + + + + +L + +++ + Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRIIGYVGMTTVASPESLTFLGGSVFET--NSQTGAQM 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VF +S Y V++ +EL+ +I+ +++Y ++K+ +++ ++ + Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDIGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402 >gi|302878276|ref|YP_003846840.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] gi|302581065|gb|ADL55076.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] Length = 498 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 57/504 (11%), Positives = 123/504 (24%), Gaps = 39/504 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 F + + N AS+ +I N+ NA + + + Sbjct: 2 SFQQGLSGLNGASRHLDTIGNNVANASTVGFKQSQAQFADMFAASLSGSGAMPIGTGTKL 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + ++ + Q F L + A + + Sbjct: 62 VAVAQQFTQGNITNTNNPLDTAISGQGFFRLTDAAGAV------LYSRNGQFQVDKTGNV 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N I+ + D A +V+ + + + R T Sbjct: 116 VNNQGHIVSGYLADAAGTIVKQTVPLKITSTNLAPVMTTTTTVGANLDSRAAVPATAAFS 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 I + + + D ++ +G + + M V ++ G + Sbjct: 176 TIDPTSYTSSTSLSVFDSLGASHVGTMYFARQPIATVGNGSFAAADTVMTVGSTVGLAVG 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 TV + T + VV++ + + D+V+ Sbjct: 236 NTVTLAGTTYTITGVTNATTLAVTPAAAGVVAAAAATTNAPSNLWNTYLTIDNVLVPPIV 295 Query: 289 QLDEMARVLIGSFSEKDPI--------------AGNSENVPGLFIADGIKDLDNKLCQGI 334 A P I + Sbjct: 296 APATTATPFATLGFSPTGTLSTLTAGAGSTAGATLGKVTTPSFNPVSTITTSPQTITFDF 355 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + Q+ N + N + ++ Y + ++ + Sbjct: 356 NSLAAGTTQFGGNFGVNTLTQNGYTSGQLNSTSTGTDGTILGRYSNGQSRALGQITLTNF 415 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L N W+E + S S + S + V+L EL +I Sbjct: 416 INPQGLQPVGNN--EWVETSASGSPTTGTPGSSSLGMLQASATEDSNVDLTAELVNMITA 473 Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478 ++ Y + + I D +LQT+ Sbjct: 474 QRVYQANAQTIKTQDSLLQTITSL 497 >gi|242278416|ref|YP_002990545.1| hypothetical protein Desal_0941 [Desulfovibrio salexigens DSM 2638] gi|242121310|gb|ACS79006.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 513 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 51/522 (9%), Positives = 120/522 (22%), Gaps = 51/522 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPEN---- 49 MSL + + S + + N+ N+ + D + + Sbjct: 1 MSLTSSLYTGISGLYVNSFATSVVSNNLANSSTVGFKSSDAIFEDVFYSTLTTGGGLAQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + N + S + + + + + + Sbjct: 61 GNGAGVSTINTDYSQGTYQNSSISTNVAINGDGYYMVVD-----PDTSTTYYTRAGNFDF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK---------IRADADKEIELEI 160 + + + + + ++N + Q + + D + E Sbjct: 116 DKDGFLVDAYGNQVQGWEMENGSASGSLTTIQLDQSQSPPKATSEIALTMNLDSQSVDEA 175 Query: 161 SNLRRFLS----ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + S N + S D+ + + N Sbjct: 176 ITANPYTSLFELYDGTQNPPLDDSQYSYSTTMTVYDENGSAHDMTYYMDPVDVDADGNIV 235 Query: 217 MVV-----------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 SDG L T + ++ + + + S+ + Sbjct: 236 WEYVAAYEAEDDMRSGSDGLDLNTTSGAGLAMTGTLTFNSEGQMTSMTAFTLNDSAASTA 295 Query: 266 AVPKG-------KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + + + Q + + D G Sbjct: 296 TKDPANWELASLSPAGYPEANLNFTGSAEGQNVSFNFGMSSDNATWDTSGG--ITSLADI 353 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 A ET S+ + + LI +Y Sbjct: 354 TAATDYSDLPSFSDYTLETGATTSYSDSSSATYDIAQDGYPTGSLVSVEVDENGILIGNY 413 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 +S + +A L + S + F + + Sbjct: 414 TNSQSIELFQLGLASFTNESGLKAEGGTL--FRATTDSGEAIIGTAGSSGFGSVVSNALE 471 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L +++ LI ++ SY ++K++ D +LQT + K Sbjct: 472 GSNVDLASQMTELIIIQSSYQANSKVVTTADTLLQTAISLKK 513 >gi|310764860|gb|ADP09810.1| Flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 410 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 114/476 (23%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE--NKNMF 63 F++ + N A+ + NI N+ + + + ++N Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGAQGMGVQVAGSSQNFK 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D L + F L + + + + Y NL+ + Sbjct: 62 DGGLTGTGRNMDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + +Q + Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + S + T + + +S F+++ + Sbjct: 143 GMPPVASTSGKLNGNLTASAEVVTKTPFDHTDGETFNSSSQIEAFDSLGNRHTIDIYYVK 202 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T T E D ++ + Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELDIK 235 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362 D + + + L+ + + Q+ S+ S Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + +A L + N W+E +S + Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 M F ++ V+L E+ +I +++Y +++ I +MLQTL+ Sbjct: 354 MAGTGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409 >gi|146277708|ref|YP_001167867.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555949|gb|ABP70562.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 423 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 44/483 (9%), Positives = 107/483 (22%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 N A + + A A+ NI N + + + V Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSIARTAVGSGVQT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + A + + Q F A + + + + + + Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNDKGVA 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + + + +A + + ++ ++ Sbjct: 122 VNASGQKLLAWPVSVEGDALSQVPGTAVPLTIPLTMGSPVGTKAVRMTVDLPTDDAMLGQ 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A+ DA D + ++ I + + + P Sbjct: 182 QAAVPPAAAFDAADP-----------TTYAAVTAIPVFDAKGNAVEAAAYFIKTENPAAG 230 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + ++ + A+ G +L P + Sbjct: 231 SPDTGWAVRLVVAGETLTPAEGDLAFDATGALAGGT-GSLSFTTGIGTPYTLDLTGTALT 289 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + Sbjct: 290 NRSFEVNTVNQDG----------------------------------------------- 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y + + L + + G+ Sbjct: 303 --KSAAALTSLEVDASGTVWAAYGAGDSVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F I V+L EEL LI +++Y S K + ++ ++QT+ Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418 Query: 476 LEG 478 + Sbjct: 419 MNI 421 >gi|238788315|ref|ZP_04632109.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] gi|238723561|gb|EEQ15207.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] Length = 428 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 53/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTPTTTNRRLDLAISQSGFFRMQD------SSGGVYFARNGQFKLDENRNIVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + T Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMIAAKATE 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + DV IS + T ++++ Sbjct: 151 SGNMVANLTSTHDV----------ISATFDPEKPDTYSFVNNMTTYDSLGNRHVINVYYV 200 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +N + + + D P + M G+ Sbjct: 201 KTAEDAANGNTW-------AVYTKDSSATLADATKPFDPTDPAAASLRGTMVFDTNGALK 253 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + Q + + Sbjct: 254 TVANGGGAASATNFNMTIPMGVVNGAPAQTFALNVAGSKQQNTGTDGIVTQNQTGYAAGE 313 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + + L N W E S + L Sbjct: 314 FTGFQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNV--WKETKSSGNPILG 371 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 372 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 427 >gi|183598617|ref|ZP_02960110.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] gi|188020796|gb|EDU58836.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] Length = 406 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 55/476 (11%), Positives = 123/476 (25%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS SI NI N+ + T V + +N Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F +++ + + N Sbjct: 62 KDGPITRTDRPTDVAISGNGFFRVQDQ------NGDIFYSRDGQFIRDKSGNLVNNQGMT 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + E V + + + + S+L + + + Sbjct: 116 VTGYPAGLDEN---------GNVVVQSGGVPQGLNIPTDMMDAQASDLAKLTINLNSEDK 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K D + D S + N +++ VY + + + K Sbjct: 167 VKSKPFDINNPDDTGSYNFSTTMTAFDSQGNTHEISVYF-----VKTDDNKWTAYAKDAG 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V + + DG ++ +AV + L + + Sbjct: 222 DKVAKKLGDMEFDGNGRLNSPTNAVFAFDYQGLNGANNGTLQ------------------ 263 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q S S + Sbjct: 264 --------------------------------IDLNKTRQQKVSESSVSAIDVNGYPAGE 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ +Y + + ++ L+ N W N S + Sbjct: 292 YTNFKVEDNGLIVANYSNQQKRVVGQVALSAFANPNGLVSQGGNV--WAPSNASGNPMDG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ + V++ +EL +I ++++Y + + I D+MLQT++ Sbjct: 350 VPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNL 405 >gi|319898656|ref|YP_004158749.1| flagellar hook protein FlgE [Bartonella clarridgeiae 73] gi|319402620|emb|CBI76165.1| Flagellar hook protein FlgE [Bartonella clarridgeiae 73] Length = 402 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 38/480 (7%), Positives = 118/480 (24%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + N + + + N+ NA Y R + + Sbjct: 1 MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTVGYKRTNVQFS---------------- 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S ++ + + + + + + Sbjct: 45 -----NYVTPSGQYAYVPGGVKSHIGHDISISGPAHATGRSGDAMIHGNGFFRVADENGK 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + ++ NT+ + + + ++ Sbjct: 100 EFLTRAGSFTRDKDGYLRNTAGYYLLNEDGERIQIKGGPTDLFGPEVTTKIDFKANFNPS 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +D +D M Y S G + E Sbjct: 160 AKVMEPEGGQIDPKDPK------------SYNQKKSMTTYDSQGKKVQVDFYMRKTAENK 207 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +G V S + +G + + +P + + E+ G Sbjct: 208 WVVDA-------YSNGEKVGSTDFNFDKEGNLIEPTKEFKLTLPDSEGKTFEVDVNFGGV 260 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ + N + Sbjct: 261 GADSLVT------------------------------------QKGNLFAFEAEADGMES 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++ Y + + + + + + +L + +++ + Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRIVGYVGITTVASPESLTFLGGSVFET--NSQTGAQM 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VF +S Y V++ +EL+ +I+ +++Y ++K+ +++ ++ + Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402 >gi|294084412|ref|YP_003551170.1| flgK flagellar hook-associated protein 1 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663985|gb|ADE39086.1| FlgK flagellar hook-associated protein 1 [Candidatus Puniceispirillum marinum IMCC1322] Length = 1402 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 58/350 (16%), Positives = 118/350 (33%), Gaps = 22/350 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48 + ++F+ ++ ++ Q A +NI N + Y RR+ S Sbjct: 1 MASLFDIGKSGLSSYRQALAVTGQNIANINTDGYKRREANLEEIQGSTGSVNSVPDQSGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V R A SS S + E + ++ +++ Sbjct: 61 GVRVTDVRRSFDEFLLNKARATSSYAEGAEAYSSNISNLEDVLL--PGEHNLGSMLAQFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 D L+ S ++ ++ A + ++F + E+ ++ ++ I +L ++ Sbjct: 119 DGLQEVSVAPADRAPRTVALEQANALAESFRQLSTEMTAVKKGIVQQTNQNIRDLNGLVA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 EL +N +I TA+K + LD RD L+ KIS + ++ + + + T Sbjct: 179 ELANLNRSIGAGTANKSN--SALDARDALIDKISNYVEVTIVGNEDGSTSLTLGTTGTGP 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V D + N F+ G S + G +K L + Sbjct: 237 AIVRHDRFATLQVV---EGDKNLSFLIGEGSGFVPTSQIKNGSLKGLSDSFSK-ASETMD 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++D +A + + N E +PG + Q + + Sbjct: 293 KVDGLAYSFVRDINTIHEQGINLEGLPGGKFFQMADIKTIESSQNLGSGV 342 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 46/411 (11%), Positives = 106/411 (25%), Gaps = 13/411 (3%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + + A Q + L + ++ T K + S + + Sbjct: 1005 SQNVAEVQSIAGFDYTGLTNLAGQTITLSDGVTTISHKFITA-------PSSVSAIVSAL 1057 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 NA A + + ++ + + +TV + Sbjct: 1058 QNATGYSNLLFDVATGSNALTLNYKNSGMATTASYTQTTNAVTVEFSTTPSISDVALALQ 1117 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 D+ + ++ + + + F +I N + Sbjct: 1118 SHSSYADLDFTVSTGTGALTLTYKTQAAVSNAPTAEINSFYDRDFNIKVNGANIIATHID 1177 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 S S G V G + + + + IA Sbjct: 1178 STEDLQASATADSLMGQRVTLGDMPDEDLVVVLTGQGARKISATYDVRPPEAKVMIRDIA 1237 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + + + + K + + Sbjct: 1238 VTVTDPINGIVDFVDTETGTTMATRTLDAYKEASAKGFAVKLSGELEIEDKFHIATNYDG 1297 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 G + D N + G E + + L + S +Q + Sbjct: 1298 VGDGRNLKAIIDLQTPNDEELDIGG------FQEVFGSMVAELGSSVRTSKLTLEAAQTL 1351 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ ++ GVNL E S LI+ +Q+Y S +++ ++ QTL++ + Sbjct: 1352 RDASLEAEASYSGVNLDTEASRLIEQQQAYQASARILSTARELFQTLMQSI 1402 >gi|312962289|ref|ZP_07776780.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens WH6] gi|311283216|gb|EFQ61806.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens WH6] Length = 678 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 52/403 (12%), Positives = 131/403 (32%), Gaps = 16/403 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54 ++ N + N A + + NI N + Y R+ T T+ Sbjct: 2 SLLNIGMSGLNAAQGSLSVLSNNIANVNTPGYSRQQTTQNAGASNPYGGVYIGTGTTLAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + ++ A + +D + + +S SL++ Sbjct: 62 VRRIYNDFLGAAYQGSTALNSDATTYAGQAAAIDKTLSD--KSTGMSAVLSAFFASLQTA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + S+ + ++ +A+ + FN + ++ + + + ++ + + S + +N Sbjct: 120 AATPSDVSARQLLVTSAQTLSNRFNAISTQLTQQKEGINAQLSTMSDQVNKLTSSIASLN 179 Query: 175 DAIKFKTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 I +S A LD R+ ++ ++E+IG++ +N + + + + + Sbjct: 180 AQITTAQSSSTSAPANLLDARNEAVRSLNELIGVTATEKNGQFSINTGTGQSLVEGNIAN 239 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 I+ + I ++ + + G+ V G I LL+ R + N L + Sbjct: 240 TISAVPS---KADNSQYTIQLNMGDTAIDIGNVVSGGSIGGLLRYRSDALMPAINDLGRI 296 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A S + + + + G + I + + T N + Sbjct: 297 AIATADSVNSQLGQGLDLNSDFGSSLFGDINSAIAIAQRSQASTGNSAGSGNLNVTIADS 356 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + Y + + + + P I+ Sbjct: 357 SKLSTFDYKVTFTSGNLYNVVRSDGKAMGSFDTTTTPPPVIDG 399 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/347 (9%), Positives = 79/347 (22%), Gaps = 4/347 (1%) Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 N++ + ++ + L V + S Sbjct: 336 SQASTGNSAGSGNLNVTIADSSKLSTFDYKVTFTSGNLYNVVRSDGKAMGSFDTTTTPPP 395 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 D + ++ + G ++ P + F + + + Sbjct: 396 VIDGFTLALDGAGPVAAGDSFKISPTANGASGISVELKDPNKLAFAAPLAGNASKTNTG- 454 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + + A + + + Sbjct: 455 ---TGAFTPPTLTVPIDINGGAATAQLRTGIENSMPVKMLFGKPAADGTQPYSISDAQGN 511 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + I G + + P + G N Sbjct: 512 PLGTGTIIPGQGNKITINVPMRDAAGALIPGKSFSFDTSVSGAPADGDSTTFSFNSGATS 571 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 D N + N V+L+ + + + ++ + + Sbjct: 572 DGRNAQQLLGLQTKATVGAVDGNAGVSLVSANSRLVSQVGSKAAQANTDSTATGALLAAN 631 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ VNL EE +IK +Q Y S+++I + TL+ + Sbjct: 632 KAASNSVSQVNLDEEAGDMIKFQQYYTASSQIIKAAQETFSTLINAL 678 >gi|302392387|ref|YP_003828207.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] gi|302204464|gb|ADL13142.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] Length = 557 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 59/559 (10%), Positives = 136/559 (24%), Gaps = 83/559 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49 ++ + + I NI N + Y Sbjct: 1 MMRSMYAGVSGLKAHQTKMDVIGNNISNVNTTGYKGSRVTFKEMLNQTMEGASAPQDGRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T Q ++ + + + + E + + L Sbjct: 61 GTNPQQIGLGVSLGSIDNNMETGNLQSTGKMTDVALQGEGFFIVNDGTKNLYTRAGNLSF 120 Query: 110 SLESY-------------------------SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 E Y + NL + L +++ +A + + Sbjct: 121 DEEGYLTNSSNGNRVQGWTADEDGTIDKTNAANLEDISLDESMDASATTEAKYKDNLNPT 180 Query: 145 VQKIR----ADADKEIELEISNLRRFLSELTVVNDA------------------------ 176 ++++ +D + N+ LSE N+ Sbjct: 181 LEELNLTEGSDVFEIDNGATDNINVSLSEGENENEWNFTLSADDPDTEFVASSGSNTLSG 240 Query: 177 ------------IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 I + S L D+ + +++ G + I + + Sbjct: 241 TIQLNSDGTVSDIVDSSGSSFTDSGGLATPDIEVNQVAGTAGSTYIELPDFSSSTPHVNA 300 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 +TLF+ + + + ++ + G + V Sbjct: 301 STLFDNTNDGGTTADAITNNTRTITTNVYDSQGAEHTVTMDITKVGANDWQIAESSIDVT 360 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPG---LFIADGIKDLDNKLCQGISETICVN 341 D L I +++ Q ++ Sbjct: 361 DADINDDNGDGDLDWLGGSDHTIQFDADGNIDSGTEATLTFDPATGAADGQEVTLDFSSL 420 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 Q+ + + D + + G + Y + +NK VA + L Sbjct: 421 TQFDGDMTAGFDTADGYPQGSLESFTIDGSGTITGSYDNGYNKALAKIGVATFSNPAGLS 480 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + N S + I+ V+L + + +I ++ + + Sbjct: 481 KEGDTLFDT--SNNSGDPQVGQAGIGGRGMIAPGSLEMSNVDLARQFTEMITAQRGFQSN 538 Query: 462 NKLIMFTDKMLQTLLEGVK 480 +K I +D+MLQTL+ + Sbjct: 539 SKAISTSDQMLQTLVNLKR 557 >gi|225375212|ref|ZP_03752433.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM 16841] gi|225212879|gb|EEG95233.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM 16841] Length = 594 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 37/389 (9%), Positives = 103/389 (26%), Gaps = 28/389 (7%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT----------------MTTISP 47 + N+ + N+ N + K YVR+ S Sbjct: 5 FGSLYIGASGLQNSQNALNTTSNNLANVNTKGYVRQQVLQVDRNYTTFNTTASISQQQSG 64 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + DK S + + + Sbjct: 65 LGMKIGDVVHARDIFLDKSYRNASGRQAFYAATYEAVDEVYTFYQ-ELQGQAFQTTLEDF 123 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + ++K + + VI A V N + ++ + +I +I + Sbjct: 124 WTAFQEWAKAPDDSVQQNLVIQKANLFVSRSNAVYTGLSDYQSTINTQISDDIDRINELG 183 Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + +N I+ + A D+RD L +++ + IS ++ + V Sbjct: 184 NTIFKLNLEIQKVESGNVETAMTLRDERDNALDELASYVDISYKENSDGIVKVSVEGVEF 243 Query: 227 LFETVPRDIN----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + E ++ + + + + G++KAL+ Sbjct: 244 VDEARCYEMGKNRDEITGFVTPYWTHLSDIENGDYDNVFSFTTPISSDLNNDLGELKALI 303 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 R +++ + + S ++ + + + + + + Sbjct: 304 LARGDRKATYKDIVGLTSDEYNRSTADSIATGMSVMLQAQAQLDQLVHGMITAINDTLCP 363 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + S + + + + Sbjct: 364 NTTLGELTGNTASLTGTDENGNTVTITSG 392 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 78/270 (28%) Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 S + + T L D M + + + + ++ + Sbjct: 320 TSDEYNRSTADSIATGMSVMLQAQAQLDQLVHGMITAINDTLCPNTTLGELTGNTASLTG 379 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + + V+ ++ + ++ A+G Sbjct: 380 TDENGNTVTITSGMKVLDTKNCSTGSDKQIPPQELFTRLGTERYTKVSVQETDANGNTVT 439 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 ++ + QY + D + L ++ + + K Sbjct: 440 NDYYVYNEESETDTSKQYTLASVSVNDKLVEQESLLPHLSQNGKVNYDLAQKVAALWKGE 499 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 VT ++Y N +G S + S +GV+ E Sbjct: 500 YLTLDPDDTNKVTFIDYYNNMVGAFGTIGSVYESTAKSLSGTVTAVDNQRSQVMGVSSDE 559 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 EL+ +IK + +YN S++ I ++M+++++ Sbjct: 560 ELTKMIKFQNAYNASSRFINVVNEMIESMI 589 >gi|188997539|ref|YP_001931790.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932606|gb|ACD67236.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 413 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 47/478 (9%), Positives = 109/478 (22%), Gaps = 65/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L F A N Q I NI N + + Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDL--------VAHSLTTF 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + G L + + S N + ++ + N Sbjct: 53 ANNTPKNTEIGGGSFVALTT-----KDFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVY 107 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + N ++Q D + I + + + + I Sbjct: 108 YTRAGQFRLDANGDLVNVDGMKLQGWTLDNNGNIAGALDKINVPYAINPTITTKINLVEP 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D S IS N + T+++++ Sbjct: 168 TNLD---------------SRSNVISATFDPTNSTTFNYVNSMTIYDSLGNPHTLSFYFQ 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T S + + ++ + V + Sbjct: 213 KTNESSTGSTWKVYAYKDNDLTTQVGSSTL------------------------------ 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + P + + + + ++ K Sbjct: 243 NFDTNGNLTSGSP---FTLSLTLSNGATSPQVISVDVSKIKQVASDFIFYANQDGFAKGD 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + KN VA L+ N + + Sbjct: 300 LLGVAVTEDGIVKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLY----LPNTQTFTPI 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + + V++ E LI +++Y + ++I D++LQ + + Sbjct: 356 ITPGGILSKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMNIKR 413 >gi|15642196|ref|NP_231828.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586263|ref|ZP_01676053.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80] gi|121726540|ref|ZP_01679789.1| flagellar hook protein FlgE [Vibrio cholerae V52] gi|147674037|ref|YP_001217714.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|153213649|ref|ZP_01948922.1| flagellar hook protein FlgE [Vibrio cholerae 1587] gi|153817107|ref|ZP_01969774.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457] gi|153820826|ref|ZP_01973493.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|153825324|ref|ZP_01977991.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2] gi|153829329|ref|ZP_01981996.1| flagellar hook protein FlgE [Vibrio cholerae 623-39] gi|183179565|ref|ZP_02957776.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3] gi|227082321|ref|YP_002810872.1| flagellar hook protein FlgE [Vibrio cholerae M66-2] gi|229507726|ref|ZP_04397231.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286] gi|229512079|ref|ZP_04401558.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|229513841|ref|ZP_04403303.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21] gi|229519215|ref|ZP_04408658.1| flagellar hook protein FlgE [Vibrio cholerae RC9] gi|229522146|ref|ZP_04411563.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80] gi|229528798|ref|ZP_04418188.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)] gi|229607230|ref|YP_002877878.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236] gi|254225801|ref|ZP_04919406.1| flagellar hook protein FlgE [Vibrio cholerae V51] gi|254849326|ref|ZP_05238676.1| flagellar hook protein FlgE [Vibrio cholerae MO10] gi|255747104|ref|ZP_05421049.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101] gi|262161352|ref|ZP_06030462.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1] gi|262167777|ref|ZP_06035479.1| flagellar hook protein FlgE [Vibrio cholerae RC27] gi|262191689|ref|ZP_06049865.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93] gi|298500425|ref|ZP_07010230.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757] gi|9656753|gb|AAF95342.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549529|gb|EAX59555.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80] gi|121630993|gb|EAX63372.1| flagellar hook protein FlgE [Vibrio cholerae V52] gi|124115848|gb|EAY34668.1| flagellar hook protein FlgE [Vibrio cholerae 1587] gi|125621707|gb|EAZ50036.1| flagellar hook protein FlgE [Vibrio cholerae V51] gi|126512375|gb|EAZ74969.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457] gi|126521618|gb|EAZ78841.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|146315920|gb|ABQ20459.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|148875170|gb|EDL73305.1| flagellar hook protein FlgE [Vibrio cholerae 623-39] gi|149741008|gb|EDM55077.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2] gi|183012976|gb|EDT88276.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3] gi|227010209|gb|ACP06421.1| flagellar hook protein FlgE [Vibrio cholerae M66-2] gi|227014093|gb|ACP10303.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|229332572|gb|EEN98058.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)] gi|229341071|gb|EEO06076.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80] gi|229343904|gb|EEO08879.1| flagellar hook protein FlgE [Vibrio cholerae RC9] gi|229349022|gb|EEO13979.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21] gi|229352044|gb|EEO16985.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|229355231|gb|EEO20152.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286] gi|229369885|gb|ACQ60308.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236] gi|254845031|gb|EET23445.1| flagellar hook protein FlgE [Vibrio cholerae MO10] gi|255735506|gb|EET90906.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101] gi|262023842|gb|EEY42541.1| flagellar hook protein FlgE [Vibrio cholerae RC27] gi|262028663|gb|EEY47317.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1] gi|262032428|gb|EEY50990.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93] gi|297541118|gb|EFH77172.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757] gi|327484716|gb|AEA79123.1| Flagellar hook protein FlgE [Vibrio cholerae LMA3894-4] Length = 434 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + S+ Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ D D + ++ ++ Y L + + Sbjct: 157 TANIDLGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N + Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLSSLNNGQPIVT 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + D + Q +S ++ Q+ + + Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFSLDSATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + ++ F IS +++ +EL LI ++++ +++ + + + Q Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|297544701|ref|YP_003677003.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842476|gb|ADH60992.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 413 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 40/478 (8%), Positives = 110/478 (23%), Gaps = 65/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + + I NI N + Y K Sbjct: 1 MLRSMYSAVSGLKSHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L + ++ + ++ +S + S + Sbjct: 53 SAPQGNGGGTNPQQIGLGVAIASIDTLFTSGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + D + + + + + + A + Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGETVNTDTGNLVPISIKNWSSIAPAATTQLE 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ I + N + T R S Sbjct: 173 IGGN--------------LNASTEIDGSISYNILVYDSQGGSHIATLTFTRTDASTWNWS 218 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + ++ + Sbjct: 219 VSSSDPAISSVDGSGTLTFGADGKI----------------------------------- 243 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + N + + + S + ++ Sbjct: 244 ------ATNTTATGTLTFNMNTNETNATIGPVQLDLSQLTMFSSETDLRELSKNGNEAGS 297 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A + L + ++ S + Sbjct: 298 LESINIDKYGVVSGIYSNGREQIIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 355 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L E + +I ++ + + K+I +D+MLQ L+ + Sbjct: 356 AAGTGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVNMKR 413 >gi|163793271|ref|ZP_02187246.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] gi|159181073|gb|EDP65588.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] Length = 433 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 57/488 (11%), Positives = 114/488 (23%), Gaps = 63/488 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTV 52 MS+ + SQ F I NI N + Y + Sbjct: 1 MSIYGGMFSGVSALAAQSQAFGIISDNIANVNTIGYKDTTARFQTLVTESSSSSRYSPGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V R +L +S + F + E + E Sbjct: 61 VLARPFVNPEKQGLLQGTTSNTDISLVGDGFFIVNENDDPLTSGGEYLLTRAGSFTEDEE 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + L D+ +V + + ++ + + +SN + Sbjct: 121 GNLVNAAGFFLQGWRTDSTGTIVNS--NTKDQLSSLET-VNLAGFTSVSNPSSTANLAVN 177 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + + F L I+ + V GTT V Sbjct: 178 LPANATTASTQTTNLTIFDSLGVEHLMTINWTKNAQANEWA-YSLDVTNQAGTTTAAIVA 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 I+F+ + ++ +DG + A Sbjct: 237 GTIDFDPADGTIEDIDNGGTLVDGDTAQTTLPITALAFGSGAA----------------- 279 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + G Q + Sbjct: 280 --------------------------------ASSIVINWGTVGQTNGMSQLSGSYEATL 307 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + S + + + + + + + L N + Sbjct: 308 LNQNGSSPSALTAVEIDNEGVVTARFKNGDTRPIYKIAIGTVPAATELRS--ENGNAYKL 365 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +RS L I S V+L +E + LI +++Y+ + KLI D++L Sbjct: 366 SSRSGDLLLTEAGLQGAGAIESSALEQSTVDLSDEFTDLIITQRAYSAATKLITTGDELL 425 Query: 473 QTLLEGVK 480 ++ + Sbjct: 426 DEIIRVKR 433 >gi|237751406|ref|ZP_04581886.1| flagellar hook-associated protein FlgK [Helicobacter bilis ATCC 43879] gi|229372772|gb|EEO23163.1| flagellar hook-associated protein FlgK [Helicobacter bilis ATCC 43879] Length = 606 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 125/378 (33%), Gaps = 34/378 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 +L+ + + + NI NA ++ Y R+ + V Sbjct: 3 GILSSLHTSTTGLHAHQLMVDVTGNNIANASDEFYTRQRVIVHPEAPLYFPDYNLGRGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + ++ D + + + +S Sbjct: 63 VDSIQRLHDEFVFSRYSKAATEHNFFDTEFVTLREASTFF-PDVEGVGIYNDLEEYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + ++N ++ + + NA + +N N + ++ ++ +E+E +I++ + +++ Sbjct: 122 KDIAQNPNDTAQKQVLAKNAMILTRNLNDTKEKLLILQRKKSEEMEAQINDANKLGAQIA 181 Query: 172 VVNDAIKFKTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217 +N +K S A++ D+RD L ++ EI+G + + D Sbjct: 182 EINKKMKEMEDSLTLKQANELRDRRDELEFRLKEILGGNVFKGKLKANNLVGSQAADFDE 241 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV-VSSNQGSAVPKGKIKALL 276 S G + + +N + N ++I G + + +GK+ AL+ Sbjct: 242 DYNFSVGHGFSFIDGANFHPIVLNKSNNAAGLNRLYIRGYDFKDVDITDRMDEGKVGALI 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + ++ + + N LD AR LI S + +G + + L + Sbjct: 302 DLYNNGYEGTKVGKLQYYMNLLDSFARGLIESTNTIYAQSGTDSIKSDILEIGKNEALRD 361 Query: 329 KLCQGISETICVNPQYRS 346 + + Sbjct: 362 TNYNIKMGKFTLYAYNAN 379 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 46/113 (40%) Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++G D+ N F ++ L E+ + + G + + + Sbjct: 494 VSGNFDIANMMQQLQYDEVEFYQNKLDKKHMKLNEFYQYTTGAVANQTQEVKITLDTKKS 553 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V I + + V++ EE+ LIK + Y + K+I D+M++TLL + Sbjct: 554 VLEAIKKEHLAISQVSVDEEMVNLIKFQGGYAANAKVITTIDRMIETLLGIKQ 606 >gi|330875983|gb|EGH10132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 441 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 50/479 (10%), Positives = 104/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E + N + Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + + ++NL + T+ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATTAITNVANLNSTTALPTL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSIADPATTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGSSIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGSITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|237799206|ref|ZP_04587667.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806225|ref|ZP_04592929.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022061|gb|EGI02118.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027338|gb|EGI07393.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 442 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 54/478 (11%), Positives = 103/478 (21%), Gaps = 43/478 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + T + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLFTRAGAFHTDKEGYVVNSSG 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D + VV + Sbjct: 122 MKLQGYNVDASGSVVTGALS------------------------------------DLRV 145 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +S + + + + + T T ++T ++ Sbjct: 146 DSSNLEPKATTTITNSANLNSTTPMPSVATFDATDTKTYNTKYSTPTYDTQGNAHTLDQY 205 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T T+ + + SN S P + V + A + + Sbjct: 206 FVKTGTNTWSMYSLMDGRSISNPASTTPDKNNLTFNSAGNLVTAAPGTVPSDSANIKFNA 265 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + I + Q S L+ Sbjct: 266 DGTFAVNNWVPGVQIGTGSSATWAANGATGAASIKLNMSDITQTASVSGLLKQDQDGYAT 325 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + N+ +L Y + ++ + L + W E S Sbjct: 326 GQLSAMNVDSTGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFSSGVPV 383 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTVELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 >gi|226939374|ref|YP_002794447.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] gi|226714300|gb|ACO73438.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] Length = 526 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 49/526 (9%), Positives = 122/526 (23%), Gaps = 55/526 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 F + N AS+Q +I N+ N+ + +N V Sbjct: 2 AFQHGLSGINAASKQLDAIGNNVANSSTVGFKGSRAEFADMFAANFYGVAATQNGIGVNT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + F ++ N ++ Sbjct: 62 TLIAQQFGQGNITTTGNQLDLAISGNGFFVMQNANGISYTRNGQFQIDREGYINNNGDKL 121 Query: 116 K--NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + +V + ++ N+ + + + + + Sbjct: 122 MGWQVDDRTTPPSVQNGNLGPLKIDNSLLEPRPSDYGGESMRFNINLDSRNNPVEYNALT 181 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE---- 229 A + ++ I+ ++ +DGT + + Sbjct: 182 EGASLTGVTTLAPPATADFNASTKVKLPDGRYVITGTSGTTQVGQLFNADGTPINDAAGA 241 Query: 230 ---------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + ++ T I V ++ N AL Sbjct: 242 PTFYDKKLGWLDAAGTVQQYTPNATTPAGAAGTIAAVSIAFNPSDPATYNSKTALTAYDS 301 Query: 281 SVVP--------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI------------- 319 P + ++ + + + Sbjct: 302 LGNPIQVAVYFKKTADGQWDVYATAKHTDGSVVDLGTGNTAASPYTALGTGLAFGPDGKL 361 Query: 320 -------ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 A + + Q+ ++ + + + + Sbjct: 362 TNGGPIAAATYTPAGGGAPLALKFDFSGSTQFGTSFAVNELVQPGYASAVVSNLQIDKTG 421 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + Y + K +A L N W+E S + L+ I Sbjct: 422 IVSARYSNGQTKVIGQVVLANFANQQGLQPIGNN--RWMETYNSGNPTLNDPGSTNVGLI 479 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EL +I ++ Y + + I D++LQ+L++ Sbjct: 480 QSQALEDSNVDLTGELVNMITAQRYYQANAQTIKVHDQVLQSLMQM 525 >gi|114765247|ref|ZP_01444379.1| putative flagellar hook protein [Pelagibaca bermudensis HTCC2601] gi|114542382|gb|EAU45410.1| putative flagellar hook protein [Roseovarius sp. HTCC2601] Length = 433 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 57/486 (11%), Positives = 120/486 (24%), Gaps = 59/486 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 MS+ + S+ I NI NAD Y R + + S T V Sbjct: 1 MSISNAMASGVSGLMANSKAVEKISYNIANADTVGYRRSFSQMVTSGSTSASGSFSTGVA 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + N + S F + + A + + + + Sbjct: 61 TEVTHSNTAEGSFMDTSVNSNLTITGSGFFVVNSNIDA-SYTAGNMFTRVGSFEPDEDGN 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N + L + + S +++ + + + + + Sbjct: 120 LVNAAGLYLMGFGYGDDGTLGAVDRASFNDLEPVNIANQTISGTATTAVSISGNLPSQET 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A F + +S ++ T GT Sbjct: 180 GLDTPGDAFVTSAEYFNALGESERLTLSFQPSVNDDEWVVTVSDATTEYGTV-------- 231 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 S G+ V Sbjct: 232 ----------------------------TMSFNDTGENAGAPAAYGDVTVTAAAPAGFAF 263 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 G + + + G + Q+ + + + Sbjct: 264 DPATGEMTLTIDNGT--------------EPQVVTMALGAPGSFEGLTQFSGDYTPMTVR 309 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + S+ + D+ + + K P+A L N+ + N Sbjct: 310 PNGSESGTLTRVEFDEFGDVWGVFDNGTRKALYSIPLATFANPNGLET--SNNSTFHTSN 367 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S S+ L ++ + V++ EEL+ LI+ +++Y+ + K+I D+ML Sbjct: 368 TSGSYYLGQPGTGETGTMTSGGVESANVDIAEELTSLIQRQRAYSSNAKIITTADEMLNE 427 Query: 475 LLEGVK 480 + + Sbjct: 428 TVNLKR 433 >gi|28869140|ref|NP_791759.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213967582|ref|ZP_03395730.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385713|ref|ZP_07234131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060075|ref|ZP_07251616.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|28852380|gb|AAO55454.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213927883|gb|EEB61430.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|331017026|gb|EGH97082.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 441 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 50/479 (10%), Positives = 105/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E + N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + + ++NL + T+ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATSAITNVANLNSTTALPTL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTAADKNDLTFDSSGNLVVAAPGTVPSDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGVPESGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|319787121|ref|YP_004146596.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] gi|317465633|gb|ADV27365.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] Length = 406 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 42/476 (8%), Positives = 109/476 (22%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSENKNM 62 FN + + N A+ NI N++ + + + + Sbjct: 2 SFNASLSGINAANADLNVTSNNIANSNTVGFKSSRAEFADLFSSTSYGLASNAVGSGVKV 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + I F E + ++ + + Sbjct: 62 SNVAQQFSQGNIDPTGRSLDFAIDGEGLFTVSKNGDTFYTRAGNFQPDNRGFVVTPDGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L ++ ++ T+ Sbjct: 122 L-----------------------------------QVYAPNANGGFDVGRTTDLQLATS 146 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 L + V L + + + ++ +S G T+++++ Sbjct: 147 DSPPRQTGLVELMVTLPGAAAEPTVQPFDPSESNSYNASSGGVTVYDSLGVAHVQTSYFV 206 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + ++ + + + +L+ D + Sbjct: 207 KTENANEWQVYNYVDGNQVGEPTTLQFDSNGSLVSPADGRIA------------------ 248 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + I + QY ++ + Sbjct: 249 -----------------MDPYTPGTGAGQLELGLDISGSTQYGNSFALRSINQDGFASGK 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++A + Y + + + L N W + S + Sbjct: 292 LTTIDVAEDGVVYARYSNGDDVALGQIVLTNFVNPQGLQAVGNNM--WAATHSSGTPRSG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I V+L E+L +I ++++ + ++I D+ QT++ Sbjct: 350 APDSSDFGRIQAGALEASTVDLTEQLVNMITAQRNFQANAQMISTQDQATQTVINI 405 >gi|308050366|ref|YP_003913932.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] gi|307632556|gb|ADN76858.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] Length = 636 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 48/441 (10%), Positives = 138/441 (31%), Gaps = 25/441 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + + A++ A +Q NI N + Y R+ S V Sbjct: 1 MADLMSIARSGVLAAQKQMGVTSNNIANVGTEGYNRQVAEQRTSESTHIAGHFLGTGTYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + L S Q + + + + + + ++ L +++ Sbjct: 61 SDVKRIYNDYAQRELSLSISQHSQAETRFGKMSELDQLFSIV--GKAVPNSLNTLFENVN 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S+ + + ++ +A ++ FN+ +E++ +++++ + + +EL Sbjct: 119 NLVDMPSDLGVRENLLTSAGQLTAAFNSLGQELEGQVRQVNQQLDGVVDRVNAITAELAD 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N ++ LDQ+D L+ +++E + ++ I ++ V L Sbjct: 179 INLQLQKV---NGQDLQLLDQQDRLINELAEYVQVNVIPQDMGVKSVMAGGSIMLVAGET 235 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + G++ G+++AL+ R+ + +L Sbjct: 236 PMQLGLTSG--DPITHETRLTGTSGDQTVVLGTSAVGGEMQALMDYRNQDLAGAIQKLGV 293 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA + +F++ + + G + I + + + Q Sbjct: 294 MALGVADAFNQSQAAGFDLDGNVGQNLFSDINSPNMTIGRVAVYAGNTGTQALG---VEI 350 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 D S +++ + + Y + + + + + + Sbjct: 351 DDTSALTGGRYDLSFDGTDYQITDQYGTTTTLSADPNDATRLISPDGF-----SLRVGAG 405 Query: 413 KNRSDSHDLHMKSQVVFNHIS 433 + S I Sbjct: 406 TPAAGDKWTLTPSAGAAASIE 426 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 39/364 (10%), Positives = 94/364 (25%), Gaps = 8/364 (2%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + A V FN S + + + + +I++ + + V Sbjct: 281 NQDLAGAIQKLGVMALGVADAFNQSQAAGFDLDGNVGQNLFSDINSPNMTIGRVAVYAGN 340 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 A + D + + + P + Sbjct: 341 -TGTQALGVEIDDTSALTGGRYDLSFDGTDYQITDQYGTTTTLSADPNDATRLISPDGFS 399 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + +S + + A ++V + L + R Sbjct: 400 LRVGAGTPAAGDKWTLTPSAGAAASIEVVMDNPRGLAAAGYGLETVTGNGEATLLAVDRT 459 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + I D + T + + D + Sbjct: 460 NPNLPGNGEVMTIDVDYSTTPSPTYSISDSQGNALATGAFTGNQIDALGFSLALNPDTAT 519 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + L ++ N + N T+ + + Sbjct: 520 GDQFSLDISFGPGDN-------RNAVNMAGLATAKIMGGGNATMTDVYEGITTSVGGQTR 572 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V +E + GVNL EE + L++ +Q+Y S +++ + TL Sbjct: 573 AAEVALDSAETVKMQATERVAAESGVNLDEEAANLMRFQQAYQASARIMTVAKETFDTLF 632 Query: 477 EGVK 480 V+ Sbjct: 633 AAVR 636 >gi|220934394|ref|YP_002513293.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995704|gb|ACL72306.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 48/475 (10%), Positives = 110/475 (23%), Gaps = 73/475 (15%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRSENKNMF 63 F A + N AS NI N+ + + T + Sbjct: 3 FRTALSGLNAASADLRVTGNNIANSGTTGFKQSRAEFADVFALSYGGISQTAIGTGVRLS 62 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 I + + + + E Y N L Sbjct: 63 AVTQQFSQGNIEFTGNNLDLAMNGQGFFVLNDSGTQVYSRAGAFQVNREGYVVNTQGQRL 122 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 NAE N + ++ + +++ L+ +VV Sbjct: 123 QVYTPQNAEGTQFN----TGSLADLQLSLSEAPPSATTDVNVRLNLSSVVEPI------- 171 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D D D S + + + + +Y + + ++ + Sbjct: 172 --DPAIAFDVADPSSFHYSTSLTVYDTLGQAHTASLYFRNTD--------TLQWDSYLAI 221 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 P+ ++ + + + + Sbjct: 222 DGNLAGGPLPLEFNSDGTLNTATTTTPLNFGTYALTN----------------------- 258 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 I + QY + + Sbjct: 259 ------------------------GADDLNIDFDLANATQYGGAFNVTSLSQNGFTTGRL 294 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 N ++ + + + ++ +A L + N W E + L Sbjct: 295 NSIDIDPTGVVFARFTNGQSQALGRVALANFANPQGLQQLGDN--AWGESFAAGDVILGE 352 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I + V++ E+L LI ++++ + ++I D + QT++ Sbjct: 353 ADTGNFGLIQAGGLESSNVDIAEQLVKLITAQRNFQANAQVITTADAVTQTIINI 407 >gi|300938647|ref|ZP_07153376.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1] gi|300456432|gb|EFK19925.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1] Length = 547 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 52/553 (9%), Positives = 127/553 (22%), Gaps = 84/553 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90 + E L A +S +Q F + + Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---------------- 134 ++ + I K + + ++ A Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180 Query: 135 -----------VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + N + ++ ++ ++ + +E+S +T+ N + ++ Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240 Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS------------------TIVRNNNDMVVYTSDGT 225 D ++ I G + R+ + + G Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 K F G I A + +V+ Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVSIGATVTDASAVLAT 360 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + + + + S T+ Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + + + + + + + Sbjct: 421 VNMDVLITDEAKIAMASAEDAGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + V +S + GVNL EE L + +Q Y + +++ Sbjct: 474 SLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533 Query: 466 MFTDKMLQTLLEG 478 + + L+ Sbjct: 534 QTANAIFDALINI 546 >gi|226327746|ref|ZP_03803264.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] gi|225203450|gb|EEG85804.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] Length = 406 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 119/476 (25%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ +I NI N+ + ++N Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGASVSFADVFAGSGAGLGVKVAGISQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 KDGSITTTNRPTDVAISGGGFFRIEDQ------NGGVFYSRNGEFGKDKNGFLTNMQGMR 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + + I + + ++ + + Sbjct: 116 VTGYPVQ----------SVDGKNVVQKGATPTPIVIPTDMMNASATDKVDMTVNLNSAEE 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +D S T ++++ + N Sbjct: 166 PIDQTTHAFNPKDN--------------------DSYNFSTNVTTYDSLGNEHNLNLFFV 205 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +E D Q + L+ + V+ + V Sbjct: 206 KTKDNEWEVHAQDSTTGEPAQN-------LGKLVYKNNGVLDETATSIKNFTTVSYKGSE 258 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D Q + S + + + Sbjct: 259 TMD---------------------------MAMNFTGSTQQKVAESSVSKLAQNGYQAGE 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + ++ +A L N W E N S S + Sbjct: 292 FTNFRIEQDGSIMATYSNQQSQVVGQIALANFANAGGLSSQGDNM--WSETNGSGSPIVG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + VF ++ + V++ +EL +I +++Y + + I D++LQTL+ Sbjct: 350 VAGSGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 405 >gi|292670031|ref|ZP_06603457.1| flagellar hook-associated protein [Selenomonas noxia ATCC 43541] gi|292648332|gb|EFF66304.1| flagellar hook-associated protein [Selenomonas noxia ATCC 43541] Length = 564 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 57/385 (14%), Positives = 128/385 (33%), Gaps = 18/385 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQR 56 N ++ NI NA + Y R+ + + V VV Sbjct: 2 VRGIQNNQLSLDTVGHNITNASTEGYSRQRVDSAATNYQERPSLYGNVYVGGGVDVVALN 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 DK + +S+ + ++ E + +D + + + + + S Sbjct: 62 RARNVYADKQYWSETSSQNLYKTYKTNYDKVESIF-NDAKKTGILNAMQQFYSAWVNLSD 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S+ V+ +V T A+++Q E+ +++ + E+ +N Sbjct: 121 YASDAASRTAVLTKGNNLVDRIKTGAKQLQDQITAQYDEMRIQVGKVNGITEEIARLNKN 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + A+D DQRD+L+ K+SEI ++ N V S+G TL + R + Sbjct: 181 IMLAETNGAKANDLRDQRDLLVDKLSEITNVNVYEEANGQYTV-VSNGMTLVQRDNR-LT 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 E + + + G G +KAL + + + ++A Sbjct: 239 LEMSEPINNDRYGITDYTIRIKEAGGLGYVPQGGILKALQDTIVQD-KGYIDNVADIAAT 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ +F++ + +N ++ ++ + G + T + + R + Sbjct: 298 LLTTFNDVHKLGAGIDNNATSWMNFFGRNSFHSNATGSNYTGERYTWHVDPTTGDRWMTA 357 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDS 381 ++ ++ + Sbjct: 358 TGQQVTRTTAAGTTTVTTVDTSNAA 382 >gi|307945688|ref|ZP_07661024.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4] gi|307771561|gb|EFO30786.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4] Length = 459 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/483 (10%), Positives = 122/483 (25%), Gaps = 27/483 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSE 58 M + N A + S+ +I N+ N+ Y R DT S TQ S Sbjct: 1 MGIYGAINSAVSGLTAQSRALENISGNVANSQTTGYKRLDTTFADLVSGGGSRQATQVSG 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + I + + E N S + + + Sbjct: 61 TTYATSRATNTLQGDIAARDVGTYMAINGEGYFIVTEANAVVDGTTSFEETDYYTRAGDF 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 D G V + + +I + + + N Sbjct: 121 ERDQNGYLVNSSGYYLQGFELNPDTGNPVGDTPEVVQISDQPLPANKTTAINYQANLPPT 180 Query: 179 FKTASKHDAHDFLDQRDVLLQ-KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 +T D + + + I+ I+ + + T++ IN Sbjct: 181 PETNRAKSNPDLANSDQLNITGSITATSDITNDDNDAFVDSSISGGSITIYNQNGTAINV 240 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 E + T N + + + G+ + + Sbjct: 241 ETRWAKTADDTWNVYYASDRGTAGTDAAYTRLGQAAFNADGSLNAITA------------ 288 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + D+ + + ++ + + Sbjct: 289 --------GTGVAVNGNTFEIASLQVGDVSAANVNLNFGSNSLTQFAANSGAASSVDLAQ 340 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + +A + S ++ + + + + S Sbjct: 341 DGYPAGELVGIAVDSSGRVNASYSNSQTRALYEIPLATFEAEFELRRVDGAAFAATSTSG 400 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + L + +I ++ E S LI +Q+Y+ +++++ D+ML + L Sbjct: 401 APVLISSN----GNIVPEAVELSNADIATEFSKLIVTQQAYSANSRIVTSADEMLDSALN 456 Query: 478 GVK 480 V+ Sbjct: 457 MVR 459 >gi|99082779|ref|YP_614933.1| hypothetical protein TM1040_2939 [Ruegeria sp. TM1040] gi|99039059|gb|ABF65671.1| Flagellar hook protein flgE [Ruegeria sp. TM1040] Length = 422 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 50/480 (10%), Positives = 123/480 (25%), Gaps = 58/480 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ + N S + A+I NI N+ Y R T + + + Sbjct: 1 MTISSSLNAGVAGLAANSTRLAAISDNIANSSTAGYKRVVTSFESMVISQSGGRYAAGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ + + S++ + + + E Sbjct: 61 SVNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVKAGEDPNMLLTTSGSFRTNDE 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + N + + V + D + I + + L + + + Sbjct: 121 GYLTTSSGLVLLGWPANSDGTLPSVARDTDDPLEPIRFDTAQLSAAPTTAVSLGVNLPAS 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 +A A + + Sbjct: 181 SAVTGAAGAAEENTIQYFDNL--------------------------------------- 201 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + N ++ + + G ++ ++ V + Sbjct: 202 ---GGQQDLNIVYTPTGAADNEWTMTLTDGVTGTVVGDYTLTFDDSVTGKGTLSTVTTTT 258 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 DP G + I I V Q S+ S + Sbjct: 259 GGAYDPATGAI--------------IVTTDSGPIEIEIGVMTQLASSFSAATIEKDGYEA 304 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + Y + ++ P+A + + +S ++ S ++ Sbjct: 305 ASFAGVEVDEGGYVHALYENGSSRIVYQIPLADMPNANGMRSL--DSQTFMPSPDSGAYY 362 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L ++ G ++ EL+ +I+ +++Y+ + K+I D+MLQ + Sbjct: 363 LWDAGAGPTGTVASYRQEESGTDVASELTTMIQTQRAYSSNAKVIQTVDEMLQETTNIKR 422 >gi|253990127|ref|YP_003041483.1| flagellar hook protein FlgE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781577|emb|CAQ84740.1| flagellar hook protein flge [Photorhabdus asymbiotica] Length = 404 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 115/473 (24%), Gaps = 71/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI NA + V Sbjct: 2 AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + T ++ + + + Sbjct: 50 -------------LGVKMSGINQNFKDGTPTTTNRTLDMAITQGGFFRMQSSDGTIRYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E + +LT A + Sbjct: 97 NGEFKLDENRNI-------------------------INMQGMKLTGYPAVSVNGGAPEI 131 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + +S + N + + + G E + ++ Sbjct: 132 QKGANPEPITISQDMLSAKATTKVTMTANLNSMHKKTTGAFSPEEADSYNYTTSVTTFDS 191 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + V + N+ Q+ E A+ + D Sbjct: 192 LGNPHNVRVFFVKTNDNEWQVH------------------AQDSTVEGAKAASLGTLKFD 233 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + N I + ++ S L +N Sbjct: 234 GNGKLIGDNNQFTFNVPSLNGSNAADITIDFNGSKQQKIDAD-SILAPKQDGYAAGKFNG 292 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + +I Y + ++ + L N W+E S S + + Sbjct: 293 YRIEKDGRVIGTYSNLQSQVLGQIVLTNFANPEGLAAQGDNV--WVETGASGSSIIGIAG 350 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V++ +EL +I +++Y + + I D++LQTL+ Sbjct: 351 SGGFGELLSSTLEASNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 403 >gi|319406994|emb|CBI80631.1| Flagellar hook protein FlgE [Bartonella sp. 1-1C] Length = 402 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/480 (8%), Positives = 113/480 (23%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + N + + + N+ NA Y R D + Sbjct: 1 MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTIGYKRTDVQFS---------------- 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S ++ + + + + Sbjct: 45 -----NYVTPSGKYAYVPGGVKSHIGHDVSIGGPARATGRSGDTMIHGNGFFRVADENGK 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + ++ NT+ + +N+ + Sbjct: 100 EFLTRAGSFIRDKDGYLRNTAGYYL---------------------------LNEDGEKI 132 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 D+ + + I + E IN E Sbjct: 133 QIKGGPT-------DLFGPEATTKIDFKANFNP----------SAKVVEPKDGTINPENP 175 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 +Y+ G V + + D + LI Sbjct: 176 ETYSQKKSMTTYDSQGKKVQVDFYMRKTDENKWVVDAYSDGKKVGSTEFNFDKEGNLIEP 235 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 E +SE + + L + N + Sbjct: 236 TKEFKLTLPDSEGNTFEVNVNFGGVGADSLV-----------TQKGNLFAFEGEADGMES 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++ Y + + + V + + +L + ++ Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRTIGYIGVTTVASTDSLT-FLGGTVFETNSQT-GPQM 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VF +S Y V++ +EL+ +I+ +++Y ++K+ +++ ++ + Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402 >gi|317154735|ref|YP_004122783.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316944986|gb|ADU64037.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 554 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/561 (9%), Positives = 119/561 (21%), Gaps = 88/561 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M L + S++ I N+ N + + + Sbjct: 1 MGLGSSLYAGITGLTVHSERMTVIGNNLANVNTVGFKGTWMQFEDLLSQDFATVNGVGQI 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + + A + + ++ R Sbjct: 61 GRGVRVSTIYSDFGQGSFESSTEATDVAISGDGMF-----VLSPKGLDSKFYSRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA----------REVQKIRADADKEIELE 159 + Y + ++ ++ A V + + + IR D + Sbjct: 116 DNDGYLVDPHGYVVQGWAVEQATTSVSSTSATTTSTVNSTRIVGTPTDIRLDNFQSSPKA 175 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNN 214 S++ + D T + D D S + + + Sbjct: 176 TSSMSVVTNLDPTATDKSTSATHPYFAMFENWDGTEDTPLDATRYSYSTTMKVFDDIGTA 235 Query: 215 NDMVVYT-------SDGTTLFETVPR---------------------------------- 233 +++ VY + G T++E + Sbjct: 236 HNVTVYFDPVTLSNAGGDTVWEYMVTVNPSEDRRMLSGADGNITSIGKGLTEASGVLMVG 295 Query: 234 -----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 M+++T+ S + + G Sbjct: 296 TLTFTTGQLTAMSAFTLKSNGGMTGGPDDLRNWTPADFSTGGYPVFTANFLGKSNASTAE 355 Query: 289 QLDEMARVLIGSFSEKDPIAGNS---------ENVPGLFIADGIKDLDNKLCQGISETIC 339 + + S D + Sbjct: 356 AANATPIQMDFGISNNDLSGNGWTVSLGTMPSNAAAAQLAITNSTGYLPSFRDPAVSALA 415 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S L G + +++ L HY + +A Sbjct: 416 TQSYNTGGSSTLFQGQDGYSAGILQNISVSREGVLTGHYSNGEVIELYALTLATFTNKHG 475 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N E S + + V++ E +I ++ + Sbjct: 476 LRREGGNLFS--ETRESGPALTGQAGSSGKGTVDGNALELSNVDMATEFVRMITTQRGFQ 533 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + K+I TD ML ++ + Sbjct: 534 ANTKVITTTDSMLGEVIAMKR 554 >gi|258621049|ref|ZP_05716083.1| flagellar hook protein [Vibrio mimicus VM573] gi|258625277|ref|ZP_05720185.1| flagellar hook protein [Vibrio mimicus VM603] gi|262170825|ref|ZP_06038503.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] gi|258582450|gb|EEW07291.1| flagellar hook protein [Vibrio mimicus VM603] gi|258586437|gb|EEW11152.1| flagellar hook protein [Vibrio mimicus VM573] gi|261891901|gb|EEY37887.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] Length = 434 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + + V Sbjct: 3 YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + SY Sbjct: 63 VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDKIVPQQNE---LTRNGAFHLDKNSY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D+ + E + Sbjct: 117 MVTANDEFLLGY--------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A A+ + D + ++ ++ Y L + + Sbjct: 157 TANIDLGANLPANGELKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQPN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 T E + G S + D + N + Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDATSPGGHVGHT------MRFNNDGTLASLNNGQPIVT 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + D + Q +S ++ Q+ + + Sbjct: 271 EPLGGGTNPVDLNGADV-------------------SQTLSFSLDSATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F IS +++ +EL LI ++++ +++ + + + Q Sbjct: 370 FSGDKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|163735543|ref|ZP_02142975.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] gi|161391163|gb|EDQ15500.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] Length = 416 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 55/469 (11%), Positives = 118/469 (25%), Gaps = 62/469 (13%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENKNMFDKV--LHAHSSA 73 ASI NI N+ Y R T + R+ + + D+ L + S++ Sbjct: 1 MASISDNIANSSTFGYKRVQTDFESMVLSSGGGSYAAGGVRANTQRLIDERGTLVSTSNS 60 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + ++ R E Y + S +L Sbjct: 61 TDLAVRGGGMLPVAQSAQVQTAGADAPMFLTTTGSFRTDAEGYLTSQSGLVLMGWPAAAD 120 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 + +A ++ +R + S +N A + + Sbjct: 121 GSIPVYPRDTADGLEPVRIATGQLAG------NPTTSMSLGINLPATETEADSAGLTEQI 174 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 S+ + I+ T E +S Sbjct: 175 SVEYFDNLGTSQSVSITFTPDVPAPGNPAT-----------NTWTMEMFDSVNPAVSIGS 223 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 ++ + GS I A D+ Sbjct: 224 YTLEFNDSRTGGGSLFDVTPIGASPAYSDTT----------------------------- 254 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 I + ++ G Q + + + S + ++ Sbjct: 255 -----GLITINVAAGPIEVDIGALGDTEGLSQLSYSFAPISVTKDGSAIGNFVGVDVDPN 309 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + + P+ + L + +S +L +S + L Sbjct: 310 GFVRASFDTGEIRTIYQIPLINVPNPNGLQAF--DSQTYLPSRQSGAFFLWNAGDGPTGD 367 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I ++ EL+ +IK +++Y+ + K+I D+MLQ + Sbjct: 368 IVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDEMLQETTNIKR 416 >gi|148258440|ref|YP_001243025.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146410613|gb|ABQ39119.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 466 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 51/487 (10%), Positives = 118/487 (24%), Gaps = 28/487 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53 MS+ A + S A+I NI N Y DT + + V Sbjct: 1 MSISTALLTAFSGMKAQSYAMANISGNIANTQTPGYKYVDTSFSDLISSQTRKQAVAGSV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + N L A ++ +F ++++ + Sbjct: 61 VAEARFTNSVQGALRATGTSTNMAINGPAFFSVQQKTGDSKFSGVPLYTRRGDFTIDKDG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y N ++ L T +D A + + I+ + + ++ Sbjct: 121 YLMNGADLYLFGTNLDPATGSAVSSGPIRINNSNMPGRQTTRIDYGANLPKAPVTTAGSA 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 D+ + A+ L D + + + G T Sbjct: 181 GDSTPYAVATAIVTDPTLATPDTSKKVPAAQAQSFLDKSLPGPSLTMYGAGGT--PVSVS 238 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++ + + SS+ GS D Sbjct: 239 TRWAKVQDANAAATPPKNATWNLFYASSSTGSKASDWTNVGHAFAFDG------------ 286 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + S + + + + S + + Sbjct: 287 -AGKFVPPAAAVVAGDGSVALKIPQLTVDGVNSGDVTLSIGSGGLTQLATSSGAVTTNTL 345 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 ++ ++ + + VA L + + + Sbjct: 346 AQDGYPAGSLKSLSVTSEGTIVGTFTNDMTAAVAVAGVANFANPNALKPASGG--SYEQT 403 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + ++ E S LI +Q+Y+ + K++ + +M+ Sbjct: 404 RDSGPPIAGLNGATIVG----GNVEASNSDVAGEFSKLIATQQAYSANVKVMTTSQQMMS 459 Query: 474 TLLEGVK 480 LL ++ Sbjct: 460 DLLNAIR 466 >gi|283477483|emb|CAY73399.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM 12163] Length = 427 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 62/425 (14%), Positives = 122/425 (28%), Gaps = 61/425 (14%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 K+ S ++ + FN+S+ + + + +I+ + ++ +L +N+ Sbjct: 3 KDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLNE 62 Query: 176 AI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVPR 233 I K + D LD RD LL+ +S GI M V +DG L Sbjct: 63 NIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTRV 122 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++ + + G + L R+ + +N+L++M Sbjct: 123 YQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQM 182 Query: 294 -------------------------------ARVLIGSFSEKDPIAGNSENVPGLFIADG 322 L + D P + Sbjct: 183 ALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKAE 242 Query: 323 IKDLDNKLCQGISETICVN-----------------------PQYRSNPSFLRDGGSVSK 359 + + + L V++ Sbjct: 243 DYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVAE 302 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEKN 414 V N + + + N + GI TL E + + L + Sbjct: 303 NVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLIGKATLTESYASLVSGLGSS 362 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + V N ++ + + VGVNL++E L E+ Y + +++ ML T Sbjct: 363 TSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLDT 422 Query: 475 LLEGV 479 LL Sbjct: 423 LLAIK 427 >gi|89902477|ref|YP_524948.1| hypothetical protein Rfer_3717 [Rhodoferax ferrireducens T118] gi|89347214|gb|ABD71417.1| protein of unknown function DUF1078-like [Rhodoferax ferrireducens T118] Length = 404 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 41/473 (8%), Positives = 105/473 (22%), Gaps = 71/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + N +S+ I NI NA+ Sbjct: 2 SFQTGLSGLNASSRSLDVIGNNIANANTTGMKSSRAEFGDLVA----------------- 44 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + ++ + S + ++ + + Sbjct: 45 -SSLGAGGSSGAGIGVAVGSISQQFSQGNINITGNDLDVAINGGGFFQLALPDGSAAYTR 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + S V D + + + +A Sbjct: 104 DGSFKLDANGYIKTNSGANVLGYPTDKTGKTTSVKPEILQL------------PTSAPIA 151 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + ++ L + I T + + + T+P ++ F K+ T Sbjct: 152 ASATTAISAELNLDARAPIATSVTPPTPRSTYGTSLTAYDSQGVTMPVNLYFSKVTPTTA 211 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ ++ S G +++ Sbjct: 212 GTDQWAVYDSPTGASVGSLVFDASGALQS------------------------------- 240 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + ++ + Q+ + + Sbjct: 241 --------STMGSLTLTPAPPSIVPAFPVTVDVSKVTQFGAAFAVSNLTQDGYAPGELTG 292 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + + +A L N W+ S L Sbjct: 293 LKIGENGQITARYSNGQTQIAGQLSLADFRNVQGLSPIGGN--SWVASYTSGDPVLGSPG 350 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + V+L EL ++ +++Y + + I D+++ TL+ Sbjct: 351 VGKFGALRSGALEESNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 403 >gi|330445355|ref|ZP_08309007.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489546|dbj|GAA03504.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 777 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 130/408 (31%), Gaps = 20/408 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + + + +Q NI N Y R+ + + Sbjct: 3 SDLMQLGISGLRTSQKQLDVTSHNISNVHTPGYSRQVVDQKAADAQWSGGNYYGSGAYID 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + L ++ + + + + + ++ N + ++ +S+ S Sbjct: 63 SVNRAYDQFAARELTLSTTQLEESNVRHQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + ++ +TV+++A + +FN S + IR D ++++++ + + EL + Sbjct: 121 LSDHPNDLGSRQTVLESANQAANSFNNSYETLTNIRRDVNEQLDVTLERVNALGQELAAI 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232 N +++ HD LD++ L+ ++++ ++ + + V G TL V Sbjct: 181 NTSLQEL-PDGDKNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + I + G + ++L IRD V+ +++ Sbjct: 240 FSQLKMVSGDPDLEDKQIAIVNGNQAKAIKSD--HIGGGLGSMLSIRDDVIDKSLDEMGR 297 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 MA ++ + G + N + + Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAMGSALF----TDVNSPTLLKERVLKPLGSQTDIDVKID 353 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 D ++ + G + + N+ D A I TL Sbjct: 354 DVNALKAGDYKLTTSFDGTDYSFRLFDPAGNEMKQADGSAYIAATDTL 401 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 48/446 (10%), Positives = 120/446 (26%), Gaps = 22/446 (4%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + + + +S G + F+ M D Sbjct: 342 LGSQTDIDVKIDDVNALKAGDYKLTTSFDGTDYSFRLFDPAGNEMKQADGSAYIAATDTL 401 Query: 106 KLRDSLESYS-----KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 L +++ + + G++ + + + E+ R A + Sbjct: 402 PLEVNVDGLTLTMNTVMGTPPATGQSETVIIQPMRRGAANIGVEMNDPRGLAGHRQTNIV 461 Query: 161 S-NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 N + + D ++ D++ + G +T + Sbjct: 462 EANPNNTGTAQLSQTSQQTPDALAGTYQIDIINSADLVSTANAANSGTATFEAISGAAAE 521 Query: 220 YTSDGTTLFETVPRDINFEKMNS------YTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 T+ ++ + +E + + G Sbjct: 522 NAVGNYTITVNAANKLSMADDSGNAVKLIDDTGAEVTELDYPLTTTGNTLTMVASDGSQV 581 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 ++ + + + L + + + + ++ G + L N + Sbjct: 582 SVATLSNGAAANDEFTLAITTSDKLTVRNTQTNTLMDLKDDAGNTVQALAYPLTNANKEI 641 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + S+ N G + + I Sbjct: 642 TFASQTAPTLSLSD----------DANVGDNFSVTLGRSSAVGGNTNFLAMQQIQHEKTM 691 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 ++++ + +S++ +Q+ F+ SE SN GVNL EE + L+K Sbjct: 692 NEGKSSVIDLFEGLATDIGMQKSNADKTAEVNQLDFDAASERVSNISGVNLDEEAANLMK 751 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +QSY S++++ + TL+ V Sbjct: 752 FQQSYMASSRIMSVAKETFDTLMRAV 777 >gi|325982371|ref|YP_004294773.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] gi|325531890|gb|ADZ26611.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] Length = 423 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 56/473 (11%), Positives = 113/473 (23%), Gaps = 51/473 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS + NI N + Y + T +F Sbjct: 2 GFQQGLSGLSAASTNLDVVGNNIANVNTVGYKQSQAQFTD----------------IFAN 45 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L S+ Q + + ++ + D + I+ S N ++ Sbjct: 46 SLDGAGSSRTQVGIGARVATVAQLFNQGDIAPTNNPLDIAINGQGFFRMSDN---GVISY 102 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + F T A + D + T ++ + Sbjct: 103 SRNGQFRLDGNGFLTDASGINLTGYAPDANGNINTGQATNLKLNTTDISPRVTSTFNLGF 162 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D T NN F+++ D F + Sbjct: 163 NLPSNADA------------PAVTTFDANNTQSFNEKKSGVFFDSLGNDHAFTYYFQKSG 210 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + V + + + + + + + + Sbjct: 211 TLANTWDMYASVDGAIDPTGVPMGVTLDGAASVTLTFDDNGILTAPTAPFNVSVDLATIN 270 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P L + + Q+ S Sbjct: 271 PT------------------LGAGSPLVFALDLTTATQFGSQFGINLAQSDGYASGRLAG 312 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + +Y + NK +A L W+E S + + Sbjct: 313 FTTSPEGIIQGNYSNGQNKTLGQVVLASFVNPQGLNPIGDG--RWIETPSSGQPLVGEPN 370 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S + V+L EL +I ++ Y + K I D +LQTL+ Sbjct: 371 SGTLGVLQASAVESANVDLTSELVKMITAQRMYQANAKTIETQDAILQTLVNL 423 >gi|218700416|ref|YP_002408045.1| flagellar hook-associated protein FlgK [Escherichia coli IAI39] gi|218370402|emb|CAR18207.1| flagellar hook-filament junction protein 1 [Escherichia coli IAI39] Length = 547 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/553 (9%), Positives = 127/553 (22%), Gaps = 84/553 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90 + E L A +S +Q F + + Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---------------- 134 ++ + I K + + ++ A Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180 Query: 135 -----------VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + N + ++ ++ ++ + +E+S +T+ N + ++ Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240 Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS------------------TIVRNNNDMVVYTSDGT 225 D ++ I G + R+ + + G Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 K F G I A + +V+ Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + + + + S T+ Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + + + + + + + Sbjct: 421 VNMDVLITDEAKIAMASAEDAGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + V +S + GVNL EE L + +Q Y + +++ Sbjct: 474 SLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533 Query: 466 MFTDKMLQTLLEG 478 + + L+ Sbjct: 534 QTANAIFDALINI 546 >gi|207092063|ref|ZP_03239850.1| flagellar hook-associated protein FlgK [Helicobacter pylori HPKX_438_AG0C1] Length = 606 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQHVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T+ ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++N + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ F+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|304413323|ref|ZP_07394796.1| flagellar hook-filament junction protein 1 [Candidatus Regiella insecticola LSR1] gi|304284166|gb|EFL92559.1| flagellar hook-filament junction protein 1 [Candidatus Regiella insecticola LSR1] Length = 470 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 54/484 (11%), Positives = 153/484 (31%), Gaps = 36/484 (7%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQR 56 + + A ++ N+ N N NY ++ + + + Sbjct: 13 LHIITSGLKVAQAGLKTVETNMGNKLNSNYSNQEMTISTTGPGLNSGINPGNGAKIEGIY 72 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 K SS + E + N ++ L Sbjct: 73 RRVNESHIKQESQTSSEYHYSETMSDSLTSLEKSVTVNLKNR-LQLKLNDFVVQLSEAEL 131 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + ++ +VI+ A+ + FN +++ + + + ++ + ++++ + +++ N Sbjct: 132 HSTDKTTRLSVIEKAKGLASTFNDFNQQINQQKENLAEKSKSVVNDINQLCAQIAQANQK 191 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I ++ + DQRD ++++S ++ + + DG L + Sbjct: 192 IIEYQSNGTTNNSLCDQRDATVRELSTLLEMDLHRDAKGQYNISLKDGKQLVDGNMARKL 251 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T + +S+ + G++ A+ + + Q + +A+ Sbjct: 252 -----ELTPLPQGGQTVKLHYSHTSDAINPACGGQLGAINDLAFETLSDLQKNIQTIAQT 306 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L F+++ + G + + + + + ++ + D G+ Sbjct: 307 LADKFNQQLQAGYDLNGNKGEPLFKFFNNDPQGKILQVEQITPDQLAFSADATLPNDNGN 366 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + C NK + ++ + TL + Sbjct: 367 I----------------KELENCLILNKEVRINTMSEMTIRETLDAVINQFTMGVA---- 406 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 ++ +++ I + ++ GV+ E+ + ++ Q Y +LI K+ +LL Sbjct: 407 GHQEVTKLAKMNLEEIYQIRTSLSGVDENEQYAKFMEFTQHYQSMMELISSYKKIFDSLL 466 Query: 477 EGVK 480 ++ Sbjct: 467 AAIR 470 >gi|261839850|gb|ACX99615.1| flagellar hook-associated protein FlgK [Helicobacter pylori 52] Length = 606 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKVNYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241 Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + +I S + F +N + +GK+ ALL Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + + LD AR LI S + + + + + + Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + D+ +N Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444 D N T + S + + + ++L Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----VKDNGTNFMGALKLNPFFQGDDASNISL 476 Query: 445 QEEL 448 +E Sbjct: 477 NKEY 480 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142 L+E++ + ++ T ++ + S NL+ +V + + Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + ++ +D I++ ++ + ++ D D+L Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + I + + +G + N + + DG ++ Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + P + ++Q ++ Q+ ++ SF+ + + Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 +KD + SN S ++ + + G D+ N Sbjct: 447 VSVKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRSWLAPINGNFDVANMMQQ 506 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + F + + E+ + G + + S + + + I + + Sbjct: 507 LQYDSVDFYNDKFDVKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ LIK + Y + K+I D+M+ TLL + Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606 >gi|331682584|ref|ZP_08383203.1| flagellar hook-associated protein FlgK [Escherichia coli H299] gi|331080215|gb|EGI51394.1| flagellar hook-associated protein FlgK [Escherichia coli H299] Length = 547 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 52/553 (9%), Positives = 123/553 (22%), Gaps = 84/553 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90 + E L A +S +Q F + + Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120 Query: 91 SADD----------------------------HYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + I D + +Y+K ++ Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180 Query: 123 LGKTVIDNAEEVVQNFNTSAR---------EVQKIRADADKEIELEISNLRRFLSELTVV 173 + + N + ++ + I+ + Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKI--------SEIIGISTIVRNNNDMVVYTSDGT 225 + +S + + D I + +G R+ + + G Sbjct: 241 ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 K F G I A + +V+ Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + + + + D S T+ Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDASGKVAFDDLELTFTGTPAVNDSFTLKPVSDAI 420 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + + + + + + + Sbjct: 421 VNMDVLITDEAKIAMASAEDTGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + V +S + GVNL EE L + +Q Y + +++ Sbjct: 474 SLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533 Query: 466 MFTDKMLQTLLEG 478 + + L+ Sbjct: 534 QTANAIFDALINI 546 >gi|149911696|ref|ZP_01900304.1| Flagellar hook-associated protein [Moritella sp. PE36] gi|149805226|gb|EDM65243.1| Flagellar hook-associated protein [Moritella sp. PE36] Length = 659 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 61/428 (14%), Positives = 144/428 (33%), Gaps = 17/428 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT---MTTISPENVTVVTQRSEN 59 + + + + + NI N + + Y R+ T T + VT R N Sbjct: 1 MANLLQIGTSGVLGHQKMLNTTGNNISNVNTEGYSRQRTQHNSQTDNMGLARSVTGREIN 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + +VL S + + L +++ +N+ +S L +S + + + + Sbjct: 61 RFAQAEVLLDTSKFNNRDKFLTEITRTDQVL---SDSSNNLGSGVSTLFESFHTLNDDPT 117 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + +A+ +V +F + +++Q A+ EI + L + E+ +N + Sbjct: 118 SLSTRELALSDAKSLVSSFRSVGKQLQSQMKTANDEITAKPDLLNALIKEIHGLNQQVMI 177 Query: 180 KTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + LD+RD ++ ++ + ISTIV +N + + G L ++ Sbjct: 178 ANNTSQGVSGTLLDKRDESIKALASEVDISTIVNDNKSISINLISGQPLVMQ--SSVSQF 235 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + N + ++ + G + AL RD VV ++ ++A + Sbjct: 236 TAVTNNPQTSINELVLNIDNNQISLQETELGGTVGALFTFRDDVVYPALREIGQLALGIG 295 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + ++ + + G I + + N ++ S G Sbjct: 296 SAINSQNRMGLDLNGQLGKDIYGMPETMAQGY------HDNSNSEHMVTSSIRPTEGGSL 349 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA--RNSIGWLEKNRS 416 + V + + D VT+ E+ + + +S Sbjct: 350 TVSQYQVTMTSPLTFDVYEIKDGQKSTNPLPISGAYPGPVTVDEHGFDIDFSAAVGGFKS 409 Query: 417 DSHDLHMK 424 + Sbjct: 410 GDKFILSP 417 Score = 90.9 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/368 (10%), Positives = 98/368 (26%), Gaps = 3/368 (0%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + +++ T A+ L+ Sbjct: 295 GSAINSQNRMGLDLNGQLGKDIYGMPETMAQGYHDNSNSEHMVTSSIRPTEGGSLTVSQY 354 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 T ++ D + L + ++ + G + Sbjct: 355 QVTMTSPLTFDVYEIKDGQKSTNPLPISGAYPGPVTVDEHGFDIDFSAAVGGFKSGDKFI 414 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + Y VT+ + S++ + + I DS + N L+ Sbjct: 415 LSPTLFNFDDYQVTASRPEDIALSSALRSSRNANNITDSQLVVSNIFDSSLSFSNNALNM 474 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A + + D ++ + + D + + + + Sbjct: 475 AAPQRVTVNNSGDFDIFDANGTLLATTSSTLLGSDLLANSVPPLNPQTGYEIKISGN--- 531 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 S +N + + + + V +T+ E I + Sbjct: 532 PNPGESFSLHYNSNSAGDNTNGLKLAGLESENTLRQNKVTSGGNQMTISEGISTLISGIG 591 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S+ + GVNL EE + +++ EQ+YN S +++ + ++ Sbjct: 592 NKTRAARVDQSASESKLTQSQNWVESVSGVNLDEEAANMVRYEQAYNASARVVSISKEIF 651 Query: 473 QTLLEGVK 480 T+L + Sbjct: 652 DTILNAAR 659 >gi|163785770|ref|ZP_02180270.1| Flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1] gi|159878962|gb|EDP72966.1| Flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1] Length = 219 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 2/220 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSEN 59 MS+ + + + NI N + Y R++ PE V + Sbjct: 1 MSIFGLLSLGSQALLTNQKSVNITNENIANQYSDGYARQNVSLQDIVPEGVDIKRIERVF 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 N K + + + + E M +D ++K +S + N Sbjct: 61 DNGLFKRYLNLNQEVSSDETYTNLLSEIETMF-NDIQGTGFYKNVNKFFNSFSDVAINPD 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + VI A ++V + + K+R + I+ ++ + + + +N IK Sbjct: 120 DPAARDAVISAANQLVAKIRDTYNNMTKVRDEISLSIKDNVNKVNNIIKHIAQLNKNIKA 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + +++L+QRD LL+++S + I + R++N V Sbjct: 180 FKFDETRLNNYLNQRDALLKELSSYMDIKVVYRDDNTTDV 219 >gi|300854137|ref|YP_003779121.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM 13528] gi|300434252|gb|ADK14019.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM 13528] Length = 638 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 64/446 (14%), Positives = 141/446 (31%), Gaps = 24/446 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++FN A++ NI NA+ Y R+ + Sbjct: 3 GLFSIFNTAKSGLFAQQTAINVTSHNIANANTDGYSRQRADMETTTPYTLPSVDGAAGAG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTH 102 VTV + + D + A GQ + + + E + + + Sbjct: 63 QLGTGVTVDSIERIRDSFLDYQIRVEKGANGQYKARDKYLSQVEKVLGTDVESSGTGISS 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 I K S+ + TV + A ++ N + +V I+ + + EI+ + N Sbjct: 123 LIQKF---FSSWQSLSTSSQNVSTVKEQAYQLTNELNHTYSQVSNIKTNTNTEIKNVVVN 179 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L +++ +N IK A+ + +D LD RD+LL ++S GI+ ++++ + V TS Sbjct: 180 VNNILGKISNLNQQIKDTKATGQNPNDLLDSRDLLLDQLSSEFGINITDKDSDGIDVTTS 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + ++ + V S++ V S + + + Sbjct: 240 NSASVEGDNGSAPLLDGKPLNIVQSDNPDDT--NVASFSYITNITAVADSNGNVTKDSNG 297 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 +++ + L + + S+ L + + + ++ + Sbjct: 298 NTVYKVDYYKKGDTLTDANKVSIYVGMTSDQEKELDENRVLWADADGVAYKVTGGQDPSG 357 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + G+ ++ + P S KN N L Sbjct: 358 KAATVVDGEKLDGTSVDPISFSELAIFRPPTGELKGYTSVQKNIDDYQDELNNFAKGLAL 417 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVV 428 I +D+ + Sbjct: 418 SVNAIISQSSTWVADNVTDGSAEGGI 443 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 66/190 (34%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 N + +S D + N+ + S+ ++ N Sbjct: 445 NFFVNADQKDSSKYSAVDENNITAANITVNVAIMNDPSKIKVDTKYDSKGNSLSTSTDGN 504 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + S + + + + DL+ + S + V ++ TL Y + Sbjct: 505 RAVAVAQLANSLMNIGGITSDSSRSDLLKNIFKSDSTINNVYSVGKVDGGSTLDNYFNDL 564 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + ++ V ++S GV++ EE++ LI+ + Y + K+I Sbjct: 565 VNKVGNHEQEAKQTLDTQSVQLQSYTQSREANSGVSIDEEMTNLIQFQHCYQANAKMIST 624 Query: 468 TDKMLQTLLE 477 D++L ++ Sbjct: 625 VDELLDVVIN 634 >gi|88704306|ref|ZP_01102020.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] gi|88701357|gb|EAQ98462.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] Length = 429 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 50/483 (10%), Positives = 113/483 (23%), Gaps = 66/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F+ A + N A+ + NI NA + V+ Sbjct: 2 AFSTAISGINAATADLGVVSNNIANASTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++++ F L + E + Sbjct: 62 AGVTQEFGQGNITFTNNSLDLAINGNGFFQL-------SVEGAVEYTRAGNFQVDREGFL 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + L +D +V ++ I+ D SN+ + + Sbjct: 115 VSNQNARLQGFQVDGGGDVT-------GQLGDIQIDTSLIDPNPTSNVSLTSNLDSREVT 167 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + + N V+ + Sbjct: 168 TGTGFATNGPYDAFAVPPTAPSPADFNATTSTTIFDSLGNPHVLSLY-----YVKTANPN 222 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 FE + S+ G V+ S Sbjct: 223 EFEVYSLIDGQSQDPGTGTVGDPVTLQFTS------------------------------ 252 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + DP + +V D ++ Q + Q+ + + Sbjct: 253 -----NGQFDPASDTQIDVTAWTPVDSTGAVNGAAAQTFVVDLQQTTQFGTAFAVSSVIQ 307 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + Y + ++ +A N L W+E Sbjct: 308 DGFAAGQLRGLEIDESGIAFARYTNGESRALGQIALASFNNQNGLQPVGD--TNWVETFS 365 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S S ++ + + V + +EL LI ++++ + ++I D + QT+ Sbjct: 366 SGSPNVGEPGTSGLGAVQSAALEDSNVEITQELVDLIVAQRNFQANAQVIQAEDAITQTV 425 Query: 476 LEG 478 + Sbjct: 426 INL 428 >gi|295097203|emb|CBK86293.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 404 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 47/475 (9%), Positives = 112/475 (23%), Gaps = 75/475 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--ENKNMF 63 F++ + N A++ + NI N+ + T + + +N Sbjct: 2 SFSQGLSGLNAAAKALDVVGNNIANSQTAGFKAGSVAFADIFAGTTGLGVQVAGVTQNFG 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D L A +S++ + F + + + N + + Sbjct: 62 DGGLTAGNSSLDMGLQGKGFFRMV------SEGGAVYYGRNGQFKQDQNGNIINSTNGLY 115 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 ++ D S S+ T + Sbjct: 116 LTGYQATGTPPTIAPGAPVGPIRIPTEDMPPAASTAGSLTGNLKSDDTTI---------- 165 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 I+ ++ +T+ + Sbjct: 166 -----------------------ITDSFDYSDPKTYNYQSQIEATDTLGNKHTVKVYFVQ 202 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T E D + D + + + ++ Sbjct: 203 TAAGEWKAYARDETAPGTP-----------------DVTSLDLKFDSNGNMDTAAMASTK 245 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 L I + + ++ D + Sbjct: 246 MTINGAAFNGSAPLSIDM---------------DLSSLTRRATDSLVKVDTIDGQAPGKY 290 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + +++ Y + + +A + L N W E +S L Sbjct: 291 QSFVIGDSGEVVATYSNGQRQTVAQIVLADFANSGGLAAEGNNV--WSETPQSGQPFLGT 348 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I+ + V+L +E+ +I +++Y +++ I ++LQTL+ Sbjct: 349 SGSGSFGTINGNMLEQSNVDLGQEMVNMIVYQRNYQSNSQTIKTQSELLQTLVNL 403 >gi|317153838|ref|YP_004121886.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis Aspo-2] gi|316944089|gb|ADU63140.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis Aspo-2] Length = 711 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 104/323 (32%), Gaps = 21/323 (6%) Query: 1 MSL--LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PE 48 MS ++ + + + Q NI N + + Y RR + Sbjct: 1 MSFGANSILDMGRWALFASQVQLQVTGENIANVNTEGYSRRSAILEEGPYIDYSPGQLGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V M + + +S + L E + ++ ++ +S+ Sbjct: 61 GVKAKEVVRNFDEMVESMYVGQASMRDKWGALWEQLKGVENLL-NESTGTGISNSLSQYF 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +S S+ + + V+++A ++ +++ ++ + + +++ + Sbjct: 120 NSWNEVSQRPNNYGARQGVLNDAATLISTLAQVDQDLSLMQQRINTTVAAQVTEANTLME 179 Query: 169 ELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 E+ +N I+ ++A+ D+R ++++SE++ I+TI V T G TL Sbjct: 180 EIADLNKEIQVHNIEGSNNANALFDERARKIRELSELLDITTIDSGGGKFTVLTKAGHTL 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-------KGKIKALLQIRD 280 + + ++ F + N G A D Sbjct: 240 VDGANHYSLEFLAPQKSADLQNTSTFAGNIYFDGNDDFEYTIEFVSPGGGSAVAGEVGSD 299 Query: 281 SVVPIFQNQLDEMARVLIGSFSE 303 S ++ LD + Sbjct: 300 SSAAQYRVSLDGGKTWVADEDGN 322 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 55/444 (12%), Positives = 116/444 (26%), Gaps = 17/444 (3%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + + + S G + + + +++ A D+ + Sbjct: 280 TIEFVSPGGGSAVAGEVGSDSSAAQYRV----SLDGGKTWVADEDGNEKLFYARDYDSRV 335 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + S + + + + Q+I E Sbjct: 336 NVEGLQLWFGSTTDSKGDPIGQFAVGDRFIISPHQGLYWVENTSSKQEITPQTHFNGEEN 395 Query: 160 ISNLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 S L N K++ ++ + + + + + + S + Sbjct: 396 TSRLTGGSLAALLTFRDNYIGKYREKLENLTETLVWETNRRHSQGAGLQAFSVVEGTYGV 455 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + G+ V V + S + + A Sbjct: 456 SDPTKALGSDSTGLVFGSRLQSGTAFMYVYNTSTGLLASSASLDFG---------GGATF 506 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + Q ++ I + + + +E L L Sbjct: 507 NPEIHSLEDVQAAINTTFAGSISASIVNNKLILEAEEGRTFAFGTDSSGLMAALGINTFF 566 Query: 337 TICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + N D ++ + AG V Sbjct: 567 QGSTPMDIQINAKLSGDLDYLATGHVNGAGEMNAGDNTTALSMYALREAQVTISSVVEGT 626 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 T +LL+Y +G + + + + + ++E GVNL EE+S LI+ + Sbjct: 627 TKTSLLDYYNGLVGNVGTDTNRAKFNFNFYNTLATDLNERQQQVAGVNLDEEMSNLIRYQ 686 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 SY + KLI D+MLQT+L Sbjct: 687 ASYTAAAKLITTADQMLQTILSLK 710 >gi|84502376|ref|ZP_01000512.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] gi|84389188|gb|EAQ01985.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] Length = 422 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 55/473 (11%), Positives = 121/473 (25%), Gaps = 58/473 (12%) Query: 15 NNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRS--ENKNMFDKVL 67 S+ A I NI N+D + R S V+ R+ ++N D Sbjct: 1 MANSKAVARISYNIANSDTYGFRRSFAQMLTSGATIPTGTVSASGVRAEVVHQNTQDGTP 60 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 +A F A+ ++ + E Y +N S L Sbjct: 61 LTTGAATNLAISGNGFFAVTRNINEGTGEPEHFMTRAGDFQPDSEGYLRNASGMYLAGFP 120 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 D + + +Q +R S + + + Sbjct: 121 YDESGSLGVIDRNQFSGLQTVRIAEMSIAGNPTSEMTLTGNLPSQETGLATPGDPFISSI 180 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 F + S + + +L +S + Sbjct: 181 EYFTPLGAAERLQFSWQPSSTANEWQLEVTDSSGASYGSL--------TATFNDSGPLAG 232 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + ++ + A + + + P Sbjct: 233 TPSGFSAVTSTATAPAAFSFDTSTGVATVTVNNGTTPQTI-------------------- 272 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + G T Q+ + L ++ Sbjct: 273 ---------------------TVDMGAPNTFGGLSQFSGDYVPLVGNADGTQSGSLARAE 311 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ + + + + P+A + L+ ++ +L S S L M Sbjct: 312 ISNDGVVYGIFDNGMRRALYQIPLATVPNPNGLMT--ADNATFLVSEASGSFTLSMAGSG 369 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ + V++ EEL+ LI+ +++++ + K+I D+ML + + Sbjct: 370 TAGEITGGSVESSNVDIAEELTELIQKQRAFSSNAKIITTADEMLDETVRLKR 422 >gi|270262401|ref|ZP_06190672.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] gi|270043085|gb|EFA16178.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] Length = 410 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 104/476 (21%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V +N Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S A+ F L++ + + N+ Sbjct: 62 KGGTTTGTSRALDVAISDNGFFRLQDK------DGGIFYSRNGQFKLDENRNLTNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q+ I + + S V N K Sbjct: 116 LTGFPAAGSPP----------TIQQGANPVPLSIPEGMMTAKSTTSGTMVANLKSTHKVP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + T ++++ N Sbjct: 166 DNK------------------------TFDPAKQDSYNYVNSITAYDSLGNVHNINAYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +G + S A S + Sbjct: 202 KTSDNNWQVYTQEGNIPGSPVTDAGTM--------------------------AFDTSGN 235 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q S+ S + Sbjct: 236 LVSTTSKQGTTGEFSMLIPMSATNGAPAQNFSLSFAKSMQQSVSSDSVSKVSQDGYTAGE 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + + L N W E S + Sbjct: 296 YTNFQINNDGSVVGIYSNQQTQLLGQIVLTNFSNPEGLSSQGDNV--WQETGASGQPRVG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 354 LAGSGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 409 >gi|115523193|ref|YP_780104.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115517140|gb|ABJ05124.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 411 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 43/481 (8%), Positives = 99/481 (20%), Gaps = 71/481 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL V + N S + +++ NI N + Y R T + + S + Sbjct: 1 MSLYGVMRTGGSGMNAQSNKLSTVADNIANVNTTGYKRASTEFSSLILKSGSGSYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYSKNLS 119 + + A E N Sbjct: 61 ETQVRYAISDPGTTQYTTSATDLAIQGNGFFAVADARGTPFLTRAGSFVPDGEGNLVNAG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + ++K+ I N Sbjct: 121 G--YYLLGYNLKNGPPNVVANGLTGLEKV------NIGQTALEGNPSTKGTASANLDSNA 172 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + A + ++ + + + Sbjct: 173 AITAGPPA-------------------------------YTSKTSLVTYDNIGNKVTLDI 201 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T + N D ++ + L Sbjct: 202 YAYKTAANTWNMEVYDNATSTAG--------------------------GFPYSSPALAT 235 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D A + + + + + + + Sbjct: 236 DTFTFDVSATGKGRLDAASPTSLALTIPGGSAFTLDLST---MTQVAAEFQFKATVDGNS 292 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + G + Y D P+A + + L+ N + + S + Sbjct: 293 PSAIEKVEVDGDGTMYAIYNDGTRLATYRIPLATVPSPDKLVPEVGNVYS-VGID-SGNV 350 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + V+L EL+ +I+ ++ Y ++K+ +L L+ Sbjct: 351 QVDFAGNSGLGTVKAKALEQSNVDLASELTAMIESQRGYTANSKVFQTGADLLDVLVNLK 410 Query: 480 K 480 + Sbjct: 411 R 411 >gi|315453582|ref|YP_004073852.1| putative flagellar hook-associated protein [Helicobacter felis ATCC 49179] gi|315132634|emb|CBY83262.1| putative flagellar hook-associated protein [Helicobacter felis ATCC 49179] Length = 606 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 61/463 (13%), Positives = 129/463 (27%), Gaps = 50/463 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTI--SPENVT 51 +L+ N + NI NA+++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQVMVDVTGNNISNANDEFYSRQRVIARPQNSLAFTDRNVNMGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V T + + + D + + + Sbjct: 63 VETIQRVHDEFVFARYAKANQEHAFYSTQFDNLREASSYF-PDMNEVGIQNDLQNYFSAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN + + + + +N + + ++ A +E+ + + R +E+ Sbjct: 122 KDLAKNAKSPATKQALAQKTQTLTRNIQDTRARLVALQYKASQELVSSVKEVNRIGAEIA 181 Query: 172 VVNDAIKFKTASKH--DAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223 +N +K SK A++ D+RD L + E+IG + N+ V D Sbjct: 182 NINRHLKEMEDSKTLKQANELRDKRDALEFHLKELIGGNVSKFHVQTNSANDIKVADFDD 241 Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 G +I NS + F + N + +GK+ L+ Sbjct: 242 GYVFNVGYGFNIVDGAIFHPLVVDNSDNKDHLAQIYFQGDDFKTINITDKINQGKVGGLM 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 I + + + + LD A+ LI S + + + + L + Sbjct: 302 GIYNDGSHGTIKGKLQNYIDALDTFAKGLIESTNAIYAQSAAHNVQGKIVEFEDRTALKD 361 Query: 329 KLCQGISETIC----------------VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + + + + + N Sbjct: 362 TNYNIKEGSFDVVAYNTDGKVLAKRTIHITPITTMKDVIAQINANTDDNHDNNTTNDFDD 421 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 H+ + K I V++ ++ N G L N Sbjct: 422 YFSAHFDNKTKKFSIQAKNPSQGLFVSIRDHGSNFTGALGLNT 464 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/401 (10%), Positives = 107/401 (26%), Gaps = 27/401 (6%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 I + + ++ + V FN + + + + Sbjct: 213 LKELIGGNVSKFHVQTNSANDIKVADFDDGYVFNVGYGFNIVDGAIFHPLVVDNSDNKDH 272 Query: 160 ISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 ++ + + +N D I + K+ I Sbjct: 273 LAQIYFQGDDFKTINITDKINQGKVGGLMGIYNDGSHGTIKGKLQNYIDALDTFAKGL-- 330 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 ++ K+ + + + S + + GK+ A Sbjct: 331 ---IESTNAIYAQSAAHNVQGKIVEFEDRTALKDTNYNIKEGSFDVVAYNTDGKVLAKRT 387 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 I + + ++ + ++ + + + ++ + K + Sbjct: 388 IHITPITTMKDVIAQINAN--TDDNHDNNTTNDFDDYFSAHFDNKTKKFSIQAKNPSQGL 445 Query: 338 ICVNPQYRSNPSF---LRDGGSVSKKFLWNVKN---------------LAGYPDLINHYC 379 + SN + L + N + G D+ N Sbjct: 446 FVSIRDHGSNFTGALGLNTFFDGDSARNIALNNTYKKEPTALRPWLAPINGNFDVANMMQ 505 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 F N +T+ E + + + S + + + + ++ Sbjct: 506 QLQYDKIDFYQHKLSNAPMTIEESYQFVVSKVHTEAEKSQRTLESKEAILGVVKKEHNAI 565 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GV+ EE+ LIK + Y + K+I D+M++TLL + Sbjct: 566 SGVSTDEEMVNLIKYQGGYAANAKVITAIDRMIETLLGMKQ 606 >gi|297538896|ref|YP_003674665.1| fagellar hook-basal body protein [Methylotenera sp. 301] gi|297258243|gb|ADI30088.1| fagellar hook-basal body protein [Methylotenera sp. 301] Length = 422 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/483 (10%), Positives = 115/483 (23%), Gaps = 73/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55 F + + N AS+Q I N+ NA+ + + N Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVANANTVGFKQSRAEFADVFANSLTGGGGTQIGIGTNL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + ++++ F + + + + Y Sbjct: 62 STVAQQFTQGNVTSTNNSLDIAINGGGFFRMTNN-------GAVTYSRNGQFKMDKDGYI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L D + + D +I + + +VN Sbjct: 115 VDSASKHLTGYAADTTGAIQKGAP------------VDLKINTADLQPKATAKIVGLVNL 162 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + T + S + + + TL +D Sbjct: 163 DSRKATPAVTP--------------FSPTDPTTYTDSTAVTVFDSLGNSHTLQTYFVKDP 208 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +T + + + + Sbjct: 209 APNVWKVFTTADGISTTTLPTPTTTLTFPATGTG-------------------------- 242 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +G + P + A ++ + Q+ SN S Sbjct: 243 --LGPTPATPTAVTFAPLNPPIPPATTPTIPTGAAPVTLTIDYSASTQFGSNYSINSLTQ 300 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N + Y + ++ ++ L N W E + Sbjct: 301 DGYTSGRLAGFNTGADGIITGRYSNGQSRALGQVVLSSFANPNGLQSLGGN--AWSESST 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + + S +L EL +I ++ Y + + I D++LQTL Sbjct: 359 SGTPLTGVPNTGTLGVLQSSAVEDSNTDLTAELVNMITAQRYYQANAQTIKTQDQVLQTL 418 Query: 476 LEG 478 + Sbjct: 419 VNL 421 >gi|89072308|ref|ZP_01158887.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] gi|89051840|gb|EAR57292.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] Length = 286 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 109/313 (34%), Gaps = 27/313 (8%) Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 +S + +N + A+ + +D+RDVL++++SE++ IS+ + + + V + G Sbjct: 1 MSNIADINHRVVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQLDGSLQVTLASGQP 60 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L ++ I G + + G++ A + Sbjct: 61 LILGSDAAQLKSTPIVNEPFIKNIEIDFSGQTFAV---TGELGGQLGAFDNYLKDTLKPT 117 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 Q LDEMA+ L F++ + PG + + Sbjct: 118 QQALDEMAQNLATEFNQVLATGTDLNGDPGQALFSFDPNSPA------------------ 159 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 S L + + G D++ D K + +VTL + + Sbjct: 160 --SSLDITAIKPAELALSSDGAPGNSDVLQDLIDLSTKPMTITGL----GSVTLNDAFAS 213 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +G + ++ +F+ + + N VN EE + L+ +Y + K+I Sbjct: 214 MVGKTAIETRQAAVDQKAAETLFSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVIS 273 Query: 467 FTDKMLQTLLEGV 479 +++ ++L + Sbjct: 274 TANELFDSVLRLL 286 >gi|330889076|gb|EGH21737.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. mori str. 301020] Length = 546 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 51/417 (12%), Positives = 128/417 (30%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ MTT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + + ++ ++ Sbjct: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLL--SDSATGVSTQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + A + FN+ A ++ + + ++ + + L Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I A + LD R+ +++++ ++G+ I N N + + + + Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + +T + + Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTPNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413 >gi|268679766|ref|YP_003304197.1| flagellar hook-associated protein FlgK [Sulfurospirillum deleyianum DSM 6946] gi|268617797|gb|ACZ12162.1| flagellar hook-associated protein FlgK [Sulfurospirillum deleyianum DSM 6946] Length = 614 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 61/472 (12%), Positives = 145/472 (30%), Gaps = 30/472 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + N + N A A+ +NI N DN Y R+ + S V Sbjct: 1 MGIFSTLNTGTSALNAAQVAVATTSQNIANVDNPYYTRQRVTLSASDALNTKGVSIGTGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 ++ + + L S+++ + D ++ + ++ + Sbjct: 61 SITSIVRIHDEFVFSKLRTSSTSLAYDSYSKQVLEEVAQKF-PDLDDSGISQNVADYFAA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 S N SE ++ A + N +S ++ ++ +++++ + + ++ Sbjct: 120 WNDLSTNASEGSQKIALVQLASTLTSNIQSSKESLRSLQDTLNEQLKTSVDEINSIGQQM 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIV---RNNNDMVVYTSDGTT 226 +N I + + A+D DQRD L +S ++G++ ++ + +D T Sbjct: 180 ADLNKQINLIESEEGNYANDLRDQRDELELTLSNLVGVTVSKGKVNSDTTVDANMTDSGT 239 Query: 227 LFETVPRDINFEKMNSYTV---------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + +F +++ ++ + + + GK+ A L Sbjct: 240 DYYINIAGSSFVDGSTFHPIVIDNTSNTSNFYSVYSESQDGTRYDLTELLSGGKVGATLD 299 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 +R +V QN + + G D A A ++ + Sbjct: 300 LRGRIVDASQNDGYPLDGTIQGYIDNLDTFAQTLITETNNIYAQSAQEGMQSPVLDLKAN 359 Query: 338 ICVNPQYRS------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + Y + + G + ++ + D N D Sbjct: 360 TALQNAYNNIQNGTFDLIVYNSEGEEVARKSVSINSATTMGDDTFSESILTQINTNSDDN 419 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 N L +Y + + + F ++ +GV+ Sbjct: 420 GDNNGLNDLDDYFTATFLDDGTFSLTPKGYNTGYTIAFEDKGTNFPGVIGVS 471 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 120/435 (27%), Gaps = 33/435 (7%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + VTV + + D + + S D + Sbjct: 212 SNLVGVTVSKGKVNSDTTVDANMTDSGTDYYINIAGSS--------FVDGSTFHPIVIDN 263 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + S + + V + + ++ I Sbjct: 264 TSNTSNFYSVYSESQDGTRYDLTELLSGGKVGATLDLRGRIVDASQNDGYPLDGTIQGYI 323 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ L + + I D++VY S+G Sbjct: 324 DNLDTFAQTLITETNNIYAQSAQEGMQSPVLDLKANTALQNAYNNIQNGTFDLIVYNSEG 383 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + M T + ++ ++ G L + D Sbjct: 384 EEVARKSVSINSATTMGDDTFSESI---------LTQINTNSDDNGDNNGLNDLDDYFTA 434 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 F + + G+ + L + I V QY Sbjct: 435 TFLDD------GTFSLTPKGYNTGYTIAFEDKGTNFPGVIGVSQFLTGTNASDISVATQY 488 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + +PS ++ + + G + N F G + T+ + Sbjct: 489 KKDPSLMQGYSAP----------VDGNNKVANAMVQMQYSTLGFYSKTGSSVQDTIEGFY 538 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + S ++ + + +++ + Y + GVN EEL+ LI+ + SY+ + K+ Sbjct: 539 SSLTTKIGSDASTANSNYDTNDALYSSVYTQYQSVSGVNKDEELANLIQYQSSYSAAAKI 598 Query: 465 IMFTDKMLQTLLEGV 479 I D+ML+TLL Sbjct: 599 ITTIDQMLETLLGIK 613 >gi|238793998|ref|ZP_04637616.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] gi|238726630|gb|EEQ18166.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] Length = 425 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 115/476 (24%), Gaps = 56/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTPTTTNRRLDLAISQSGFFRMQD------SSGGVFFARNGQFKLDENRNIVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + T Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMIAAKATT 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + DV I+ + T ++++ Sbjct: 151 SGNMVANLTSTHDV----------ITATFDPQKPDTYSFVNNMTTYDSLGNRHVINVYYV 200 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T N S N + G + + D P + M G+ Sbjct: 201 KTAEDAVNG-------NSWNVYTKDSSGTLADATKPFDPADPAAASLRGTMVFDTNGALK 253 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 AG ++ + +A ++ + N + + Sbjct: 254 SVKNGAGTTDFNLTVPMAVVNGAPAQTFALNVAGSKQQNTGTDG---IVTQNQTGYAAGE 310 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + + L N W E S + L Sbjct: 311 FTGFQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNV--WKETKSSGNPILG 368 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 369 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 424 >gi|330967090|gb|EGH67350.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 441 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/479 (10%), Positives = 104/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E + N + Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + + ++NL + T+ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATTAITNVANLNSTTALPTL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSIANPATTTADKNDLTFDSSGNLVVAAPGTVPTDSANITFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGSSIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGSITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|22126390|ref|NP_669813.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45441409|ref|NP_992948.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51596011|ref|YP_070202.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108807173|ref|YP_651089.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108812483|ref|YP_648250.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145598610|ref|YP_001162686.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149366251|ref|ZP_01888286.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|153950658|ref|YP_001401290.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162421636|ref|YP_001606473.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165925992|ref|ZP_02221824.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165938693|ref|ZP_02227248.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|166010935|ref|ZP_02231833.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166210871|ref|ZP_02236906.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|167401045|ref|ZP_02306548.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420383|ref|ZP_02312136.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425748|ref|ZP_02317501.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024647|ref|YP_001721152.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis YPIII] gi|186895114|ref|YP_001872226.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|218928922|ref|YP_002346797.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229896242|ref|ZP_04511412.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|229897177|ref|ZP_04512333.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897903|ref|ZP_04513054.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229902865|ref|ZP_04517982.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|270486645|ref|ZP_06203719.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294504030|ref|YP_003568092.1| flagellar hook protein [Yersinia pestis Z176003] gi|21959376|gb|AAM86064.1|AE013853_12 hook protein [Yersinia pestis KIM 10] gi|45436269|gb|AAS61825.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51589293|emb|CAH20914.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108776131|gb|ABG18650.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|108779086|gb|ABG13144.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|115347533|emb|CAL20442.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|145210306|gb|ABP39713.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149292664|gb|EDM42738.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|152962153|gb|ABS49614.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162354451|gb|ABX88399.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165913307|gb|EDR31929.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|165922196|gb|EDR39373.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165990279|gb|EDR42580.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166208051|gb|EDR52531.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|166962078|gb|EDR58099.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049434|gb|EDR60842.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055147|gb|EDR64944.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751181|gb|ACA68699.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis YPIII] gi|186698140|gb|ACC88769.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680312|gb|EEO76411.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|229688944|gb|EEO81009.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229693514|gb|EEO83563.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701165|gb|EEO89194.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|262361784|gb|ACY58505.1| flagellar hook protein [Yersinia pestis D106004] gi|262366080|gb|ACY62637.1| flagellar hook protein [Yersinia pestis D182038] gi|270335149|gb|EFA45926.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294354489|gb|ADE64830.1| flagellar hook protein [Yersinia pestis Z176003] gi|320015467|gb|ADV99038.1| flagellar hook protein FlgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 428 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 108/476 (22%), Gaps = 53/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + N+ Sbjct: 62 NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIYYARNGQFKLDENRNIVNMQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + + T Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMISAKATT 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + DV+ + S +N + T F+++ Sbjct: 151 SGNMVANLTSTHDVIAEATSP-------FDPDNPDTYSFVNNMTTFDSLGNRHEINVFYV 203 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ D + + D P + M G+ Sbjct: 204 KRAEDATDGNTWD----------VYTRDSSAKVTDPADPTDPAAAAKRGSMVFDSNGALK 253 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + F Q S + + Sbjct: 254 NVTNGTNATSTTDFTFTIPMGVVNGAPAQSFALNVAGSKQQNTGADSIVAQNQTGYAAGE 313 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + + L N W E S + L Sbjct: 314 FTGFQINSDGSVVGTYSNQQTQLLGQIVMVNFSNPEGLSSEGDNV--WKETQSSGNPTLG 371 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 372 TAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 427 >gi|34556699|ref|NP_906514.1| flagellar hook-associated protein FlgK [Wolinella succinogenes DSM 1740] gi|34482413|emb|CAE09414.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 [Wolinella succinogenes] Length = 609 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/467 (13%), Positives = 133/467 (28%), Gaps = 55/467 (11%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 S+ + N A + NI NA N+ Y R+ T + V Sbjct: 3 SIFSSLNLAYTGLQTHQVMVSVTGNNIANASNEFYSRQRVDATAKDPLKLSNYSLGQGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 T + ++ Q S + + DS Sbjct: 63 ASTIVRIHDEYVYSRYKKAATEEQQTASQYSVLREASSYF-PEMDGIGLYKTLQTYFDSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S ++ + + N E + + + +++ ++E+++ + + ++ Sbjct: 122 TSLAQKSGDPAQKLVLAQNTETLANTIQETRARLVQLQKTTNEELKVTVDEVNSLAKQIA 181 Query: 172 VVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------------RNNN 215 +N I+ S A+D D+RD L +S++IG + N Sbjct: 182 EINKQIQTYEAEHSNKKANDLRDKRDELEFNLSKLIGGTAFKTGISSYSKVDTEIADFNE 241 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + G TL + V NS + + S + + +GK+ AL Sbjct: 242 TYNLTVAGGYTLVDGVTFHPL-VIDNSTSAEGIYTISYQGQDFKSVDITRDLTEGKVGAL 300 Query: 276 LQI-----------RDSVVPIFQNQLDEMARVLIGSFSEKDP---------------IAG 309 L + + + N LD A+ LI S + + Sbjct: 301 LDTCLGNPGESCMGKIGKIQQYINDLDTFAQGLIESTNNIYAESSQLSLTSDKLTLLTSD 360 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + + + V + + + + + + + Sbjct: 361 SVVGSGYNITSGSFDIVMYDNTGKEMGRKSVKVDALTTMQDIVNQLNANTDDNGDGNAIN 420 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNR 415 + D ++ K F P + ++ + N G L NR Sbjct: 421 DFDDNFYATYNNETKTFQILPKNPSDGIYISYQDNGTNFAGALGINR 467 Score = 90.5 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 8/272 (2%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 +Y + + + + ++ F + ++ + K+ AL Sbjct: 338 NNIYAESSQLSLTSDKLTLLTSDSVVGSGYNITSGSFDIVMYDNTGKEMGRKSVKVDALT 397 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--------VPGLFIADGIKDLDN 328 ++D V + N D I F + N+E P I +D Sbjct: 398 TMQDIVNQLNANTDDNGDGNAINDFDDNFYATYNNETKTFQILPKNPSDGIYISYQDNGT 457 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + N + + + G + N F Sbjct: 458 NFAGALGINRFFDGNSAQNINLAMRYRDDPTLIRGYREAVEGNIVVANKMQQLQYNKVNF 517 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 G N TL ++ + + + +D+ + + V + + Y + V+ EEL Sbjct: 518 FDYNGNQYNETLADFFKLVTTKIATDTADAKTSNEIKKAVLTSVKQEYVSISEVSTDEEL 577 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI+ + Y + K++ DKML TLL + Sbjct: 578 TNLIRFQGGYTANAKVVATLDKMLDTLLGIKQ 609 >gi|288574709|ref|ZP_06393066.1| flagellar hook-associated protein FlgK [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570450|gb|EFC92007.1| flagellar hook-associated protein FlgK [Dethiosulfovibrio peptidovorans DSM 11002] Length = 856 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 56/461 (12%), Positives = 129/461 (27%), Gaps = 43/461 (9%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46 F + + Q F + NI NAD + Y R+ + + Sbjct: 5 FFGFEMGRRALSYFRQGFETSGHNISNADVEGYSRQRVEASSTDPFTEPGLNRPALPGQI 64 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V V D S+ G ++ E ++ S + Sbjct: 65 GTGVKVDAIVRLRDQFLDLQYREESTVKGYWDIMTQGLDTLET-FVNEPNGESVRVGLDD 123 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 +L+ SKN + +I A + ++ +R ++ R ++++ L ++ + Sbjct: 124 FWAALQEASKNADSSSARENLISKAGTLGTYLDSLSRNYEEYRTGLNEQVSLAVNEANTY 183 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN---DMVVYTSD 223 + +++ +N I+ + + +D D+RD+L +K+ +I ++ + +Y Sbjct: 184 IDQISALNLTIREVEGTGGNPNDLYDRRDLLAEKLCSLIDCEVSAPSDMEDGEYKIYLGG 243 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + R + + S S + ++ + V I Sbjct: 244 RILVQGDKARHLELK---SVPGNSGFYDVQVEDNTFDHVSDTDVLTASIG---------- 290 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + +A + S + G G D I TI + Sbjct: 291 QKASEAIHSVAVERLASETTWKVGGGTINGAVGRL-----PVSDPDEAMNIEGTIRLQVG 345 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + S + N + + V+ Sbjct: 346 SSGVRATGNQMNNEMGSPVLLKFPGGTDRTEYTFRIASQDLNSMPGNPEEMYVTVSWNSA 405 Query: 404 AR--NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + S + ++ + + N GV Sbjct: 406 TSEWEMSSRCGNSSSG--TVSAGGELSLDELQSFLQNDTGV 444 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 64/449 (14%), Positives = 131/449 (29%), Gaps = 27/449 (6%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPT 101 S V+ + S ++ L + G+ + + + ++ S Sbjct: 417 NSSSGTVSAGGELSLDE--LQSFLQNDTGVGGRLEVYVESSGSVDRLVIKSGDDHLLSFN 474 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L + + D + N + + D + + + Sbjct: 475 DMKGDLLSGTLGLENDAPVVTVEIDNDDTLRSIANKINGAYNNGDGMPDDPSEWLHASVK 534 Query: 162 NLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + +L + V DA D R + L + + + + D + Sbjct: 535 SDGGGDYYLVLESDVVGESSRINVMGSDAGDSYAARRLGLMGGTAAEYSTETLSTSTDAL 594 Query: 219 VYTSDGTTLFETV--------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 V D L ++ + V S D + V G Sbjct: 595 VMVDDDRYLSSFNEFRQARKISASDGYKASSMEDVASGIVLSLKDTGSSAIRVEHHVSGG 654 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +I AL+++RD V+ D +A LI + G D + Sbjct: 655 EINALMEVRDDVILQHLESFDAIAYNLINEMNAVHYAG------------HGSGDYSDIT 702 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 V N S S F + + G + ++ + Sbjct: 703 GTAFFSPTSVMSGASRNLSVNDQLVQASGLFAASADDGNGQSKGEGNGDNAIAMAQLKQA 762 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + T EY + I L S + + + IS + +GVN+ EE+ Sbjct: 763 KVMAGDSATFNEYYEDFIARLGVESQRSQAMLSNQTTLVDQISSQRQSVMGVNIDEEMMQ 822 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ +QS+N ++ + D+ML ++ G+ Sbjct: 823 IMQFQQSFNAISRYVTTLDEMLDRVINGM 851 >gi|167561212|ref|ZP_02354128.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis EO147] Length = 668 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 138/476 (28%), Gaps = 39/476 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI N+ Y + + P+ V Sbjct: 1 MS-NTLMNLGISGLNAALWGITTTGQNISNSATPGYSVERPVYAEASGQYTSSGYLPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T VT + L+A + S A + I+ Sbjct: 60 TTVTVERQYNQYLSNQLNAAQTQGSSLSTYYSLVAQLNNYVGSPTA--GISTAITNYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T I NA+ + + ++ ++R + ++ ++ + + +++ Sbjct: 118 LQTVANNAADPSARQTAISNAQTLASQLVAAGQQYSQLRQTVNSQLTDTVTQINSYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + +S++ G+ + N V+ S G L Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVVP-GNGSYSVFLSGGQPLVVG 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + L+ R + Sbjct: 237 NASYQLAAVASPSDPSELTIVSKGMAGANPPGDTQYLPDVSLTGGTLGGLIAFRRQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------- 338 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALAVSFASQVNAQNALGIDLSGNPGGNLFTVGSPTVYSNQGNTGGATLSVSIAD 356 Query: 339 -------CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + + + L D + S + + + D Sbjct: 357 GTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPASTPPTMTIGGLKLSLTSTPAAGDSF 416 Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVG 441 + T L +A + + + + +S Y G Sbjct: 417 TVLPTRGALDGFALATANGSAIAAASPVLAASAPTNSGTGAITQGAVSAGYQLPSG 472 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 12/393 (3%) Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + S T + + + ++ LG + A V N ++ + Sbjct: 275 DVSLTGGTLGGLIAFRRQTLDPAQAQLGALAVSFA-SQVNAQNALGIDLSGNPGGNLFTV 333 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + ++ +I T + + + Sbjct: 334 GSPTVYSNQGNTGGATLSVSIADGTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPAST 393 Query: 217 MVVYTSDGT--TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSA 266 T G +L T +F + + +G +++ ++ Sbjct: 394 PPTMTIGGLKLSLTSTPAAGDSFTVLPTRGALDGFALATANGSAIAAASPVLAASAPTNS 453 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + + + + + F + + I + Sbjct: 454 GTGAITQGAVSAGYQLPSGTTTLTYNASSKTLSGFPAGTTVTVAGPPQTSIDITSATTPV 513 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYCDSFNKN 385 +G S TI Q S+P+ + + G N ++ + Sbjct: 514 PYDPSKGASMTISSTTQPPSSPTVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALS 573 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + N TL + + S + I+ + GVN Sbjct: 574 QLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSTAQTALVGQITAQQQSVSGVNQN 633 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE + L++ +Q Y + K+I D + +T+L Sbjct: 634 EEAANLMQYQQLYQANAKVIQTADSLFKTVLGL 666 >gi|167568430|ref|ZP_02361304.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis C6786] Length = 668 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 138/476 (28%), Gaps = 39/476 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI N+ Y + + P+ V Sbjct: 1 MS-NTLMNLGISGLNAALWGITTTGQNISNSATPGYSVERPVYAEASGQYTSSGYLPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T VT + L+A + S A + I+ Sbjct: 60 TTVTVERQYNQYLSNQLNAAQTQGSSLSTYYSLVAQLNNYVGSPTA--GISTAITNYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T I NA+ + + ++ ++R + ++ ++ + + +++ Sbjct: 118 LQTVANNAADPSARQTAISNAQTLASQLVAAGQQYSQLRQTVNSQLTDTVTQINSYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + +S++ G+ + N V+ S G L Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVVP-GNGSYSVFLSGGQPLVVG 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + L+ R + Sbjct: 237 NASYQLAAVASPSDPSELTIVSKGMAGANPPGDTQYLPDVSLTGGTLGGLIAFRRQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------- 338 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALAVSFASQVNAQNALGIDLSGNPGGNLFTVGSPTVYSNQGNTGGATLSVSIAD 356 Query: 339 -------CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + + + L D + S + + + D Sbjct: 357 GTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPASTPPTMTIGGLKLSLTSTPAAGDSF 416 Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVG 441 + T L +A + + + + +S Y G Sbjct: 417 TVLPTRGALDGFALATANGSAIAAASPVLAASAPTNSGTGAITQGAVSAGYQLPSG 472 Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 45/393 (11%), Positives = 105/393 (26%), Gaps = 12/393 (3%) Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + S T + + + ++ LG + A V N ++ + Sbjct: 275 DVSLTGGTLGGLIAFRRQTLDPAQAQLGALAVSFA-SQVNAQNALGIDLSGNPGGNLFTV 333 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + ++ +I T + + + Sbjct: 334 GSPTVYSNQGNTGGATLSVSIADGTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPAST 393 Query: 217 MVVYTSDGT--TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSA 266 T G +L T +F + + +G +++ ++ Sbjct: 394 PPTMTIGGLKLSLTSTPAAGDSFTVLPTRGALDGFALATANGSAIAAASPVLAASAPTNS 453 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + + + + + F + + I + Sbjct: 454 GTGAITQGAVSAGYQLPSGTTTLTYNASSKTLSGFPAGTTVTVAGPPQTSIDITSATTPV 513 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYCDSFNKN 385 +G S TI Q S+P+ + D + G N ++ + Sbjct: 514 PYDPSKGASMTISSTTQPPSSPTVMNDVSVSLSGTPADGDQFTIGANKGTNDGRNALALS 573 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + N TL + + S + I+ + GVN Sbjct: 574 QLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSTAQTALVGQITAQQQSVSGVNQN 633 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE + L++ +Q Y + K+I D + +T+L Sbjct: 634 EEAANLMQYQQLYQANAKVIQTADSLFKTVLGL 666 >gi|330975976|gb|EGH76042.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 54/479 (11%), Positives = 100/479 (20%), Gaps = 45/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN A++ NI N + + Sbjct: 2 SFNIGLCGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + S G L + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + Sbjct: 121 NMKLQGYNVDANGSVVTGALS------------------------------------DLR 144 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 AS D + + + + T ++T ++ Sbjct: 145 VNASNLDPKATSTITNSANLNSTTPLPTVATFDATDTKSYNNKYSTPTYDTQGNAHTLDQ 204 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T T+ + + S+ S P + V + A + Sbjct: 205 YFVKTGTNTWSMYSLMDGRSISDPTSTAPDKNDLTFDSSGNLVTTAGAAVPTDSANIKFN 264 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + G I + Q S L+ + Sbjct: 265 ADGTFAVNNWVPGVQVGTGTTATWAANGAAGAASIKLDMSSTTQTASVSGLLKQDQNGYA 324 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N+ +L Y + ++ + L + W E S Sbjct: 325 TGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVP 382 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 383 VSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 >gi|315635632|ref|ZP_07890895.1| flagellar hook-associated protein FlgK [Arcobacter butzleri JV22] gi|315479929|gb|EFU70599.1| flagellar hook-associated protein FlgK [Arcobacter butzleri JV22] Length = 636 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 61/453 (13%), Positives = 124/453 (27%), Gaps = 30/453 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52 MSL FN AQ N + ++ NI N D Y +R T + + V V Sbjct: 1 MSLFGTFNVAQTGLNASRYGIETVSNNIANKDTDGYKKRVTDLSEIGQMGSSITGRGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L + E + A + + I+ ++E Sbjct: 61 DGVSRVTSQYLYDNYTKEYTKTSYYDKLTNMLGNVEKIFA-ETSTAGLSVDINNYFTAIE 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + I + + +V N V++ ++ E++ + + L E+ Sbjct: 120 QLRSNPNSQIYKSYLQSQGQALVDNLQRLYSSVEQQQSIEKVELKTNVKEVNSILKEIAD 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N + + +D LD+RD L K+S+ + + N ++ + Sbjct: 180 INGKL---ENYTNSTNDLLDKRDALELKLSQYVNVDINRDNGYEIKI------------- 223 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++S T+ E + D V + +L D + D Sbjct: 224 --GGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAAYDANDV 281 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + L ++ + D + + + ++ N Sbjct: 282 IKYTL---NNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRALAFKINNDPKL 338 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + +N + D DS + AG + T Sbjct: 339 SQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKSNEFTGSISIVRYDATNA 398 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 ++ + VNL Sbjct: 399 VQEREALYKNESQSTTAESDVVLKILEQNVNLS 431 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 60/438 (13%), Positives = 142/438 (32%), Gaps = 21/438 (4%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V V R + + A SS + L S++ K++ + +N K + Sbjct: 209 VNVDINRDNGYEIKIGGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNE 268 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + D++ T+ ++ V + + ++ + Sbjct: 269 DGTAKAAYDANDVIKYTLNNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRAL 328 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGT 225 +N+ K D+ D V + S + N + Sbjct: 329 AFKINNDPKLSQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKSNEFTGSI 388 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ-----IRD 280 ++ + E+ Y S+S D V+ Q + G IKA ++ + Sbjct: 389 SIVRYDATNAVQEREALYKNESQSTTAESDVVLKILEQNVNLSSGSIKAQVENLSSSSPN 448 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + + + LD +A L + + + +D I + + + Sbjct: 449 NKIQSYLDNLDSLAATLSDIYDQYIQVG----------ESDYIYGQNAANDYNGTPKGEI 498 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + ++ ++ Y I D D A +L Sbjct: 499 VSVGLFSGTSVKTLAFNKNAVNDLKQDQIEYLATIQWKTDLSFDGKAQDSTAE--NVTSL 556 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 E+ RN+ + + ++ + I +Y+N V V+ +E+ L+K++ +Y+ Sbjct: 557 SEFFRNTKVNVSSDTENAKYSKEVQANIAQTIGTTYNNIVKVDEDDEMVNLMKLQAAYSA 616 Query: 461 SNKLIMFTDKMLQTLLEG 478 + ++I D+M++ +L Sbjct: 617 NAQMITAVDEMIKVILGL 634 >gi|304316900|ref|YP_003852045.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778402|gb|ADL68961.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 420 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/491 (8%), Positives = 110/491 (22%), Gaps = 84/491 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52 +L A + + I NI N + + +P+ Sbjct: 1 MLRSMYSAVSGLKAHQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQGSGG 60 Query: 53 VTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T + + + + ++ + Sbjct: 61 GTNPQQVGLGVAIASIDTLFTNGGSQRTDNPTDLSIDGNGFFIVNNGGANLYTRAGNFSF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + +++ + + D + I N Sbjct: 121 DSNGDLVTPDGYKVMGW--------------ISQDGKTVNTDTGNLSPISIKNWSSTSPA 166 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 T + LD + +S + I ++ + + Sbjct: 167 STKL-----------IQLGGNLDAGTSIGSSVSYNVTIYDSQGGSHVATIQFTKKDNAGN 215 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 NF+ + I D + +N ++ + +L Sbjct: 216 WDAAITNFDGNDLSASPVTIGSIQFDSNGLITNPAGSIFSVNVSSLP------------- 262 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + I+ + Y S+ Sbjct: 263 -------------------------------ITNTNATLGDGTNITIDLSNLTMYSSSTD 291 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 ++ N+ Y + Y + + +A L + Sbjct: 292 IRELSKDGNEAGSIESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTM-- 349 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ S + + I+ V+L E + +I ++ + ++K+I +D Sbjct: 350 FINTVNSGDPMIGAANTGTRGTINPGTLEMSNVDLANEFANMITTQRGFEANSKVITTSD 409 Query: 470 KMLQTLLEGVK 480 ++LQ L+ + Sbjct: 410 EILQDLVNLKR 420 >gi|163856441|ref|YP_001630739.1| flagellar hook-associated protein FlgK [Bordetella petrii DSM 12804] gi|163260169|emb|CAP42471.1| flagellar hook-associated protein 1 [Bordetella petrii] Length = 549 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/547 (8%), Positives = 125/547 (22%), Gaps = 73/547 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 ++N A N + NI NA N Y R+ +T+ + V V T Sbjct: 2 NLYNLALTGLNASQAGMEVTSHNINNAANAGYSRQRLVTSTAGATETGQGFFGRGVQVDT 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--------------------------- 87 + + + + + Q + Sbjct: 62 VKRQYDSFLYRQMVGAQGTGAQLATHYDQVSQINNLFGDRTVGITPALENFFASLNAGAS 121 Query: 88 ---------EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG-KTVIDNAEEVVQN 137 +++ + +L++ E + +S + + ++ ++ + Sbjct: 122 NPADPAVRQDILGKTNSLVTQINTAYRELQNLREGVNTQISTTVEQVNSYLERINDLNKQ 181 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA---------- 187 + + D + + +S L + + T Sbjct: 182 IVVAQGKSGHAPNDLLDQRDQALSELNQLVGVRYYEQGNSLNITLQSGQTLLSGTTVYPL 241 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP--RDINFEKMNSYTV 245 D ++ + + ++ G L + + Sbjct: 242 AAVQSASDPTRMALAYSLPAGSGSTVQVELSDSEISGGKLAGFLQFRSQSLDAVQDQLGQ 301 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEMARV 296 + + + + + P + L Q D + + Sbjct: 302 LAIGLALAFNAQHEAGLDLNGDPGEALFGLSQPAAIPKVGNTGDGSLTAEFTDASAIHAT 361 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + D + + L+ Sbjct: 362 SYDIVYNGTQYVVTRQSDGAVQTLTPSADTPPTIEFDGMTVTVDGTPAAGDVWKLQATRD 421 Query: 357 VSKKFLWNVKNLA-----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ + + A + + + ++L I + Sbjct: 422 AARDLKALITDPAKLALADAAGGTTNGANGLLLAKLQTEKVLGGGTLSLSGQFSQLINNI 481 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + +Y + GVNL EE L ++ Y S K++ + Sbjct: 482 GVQTQQIKTAATAQDNLITQQTSAYLSVSGVNLNEEYVNLTIYQEQYQASAKILDVASTV 541 Query: 472 LQTLLEG 478 TLL Sbjct: 542 FDTLLGL 548 >gi|37525841|ref|NP_929185.1| flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785270|emb|CAE14211.1| Flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 404 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 109/473 (23%), Gaps = 71/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI NA + + V Sbjct: 2 AFSQAVSGLNAAAGNLDVIGNNIANAATYGFKSSTVAFSDIFAGSQVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + T ++ + + Sbjct: 50 -------------LGVKVSGVNQNFKDGTPTTTNRTLDLAITQGGFFRMQGGDGGIYYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ +++ E+ + Sbjct: 97 NGQFKMDENRNIINMQGMKLTG----------YPAASVNGGAPEIQKGANPEPITIPQGI 146 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + S + N+ T F+++ + T Sbjct: 147 LMAKATTKVTMTANLNSMHKKPTEAFSPENNDSYNYPTSVTTFDSLGNPHAIQVFFVKTN 206 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D V + S + D Sbjct: 207 DNEWQVHAQDSAVEGAKAASLGT---------------------------------LKFD 233 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + N I + ++ S + Sbjct: 234 GNGKLIGDNNQFTFNVPSLNGSNAADITIDFNGSKQQKIDTD-SISAPKQDGYAAGEFKG 292 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + +I Y + ++ + L N W+E + S + + + Sbjct: 293 YRIEQDGRVIGTYTNEQSQLLGQIVLTNFANPEGLAAKGDNV--WVETSASGNPVVGIAD 350 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + V++ +EL +I +++Y S + I D++LQTL+ Sbjct: 351 SGGFGKLLSGSLEASNVDMSQELVNMIVAQRNYQSSAQTIKTQDQILQTLVSM 403 >gi|242278491|ref|YP_002990620.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] gi|242121385|gb|ACS79081.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] Length = 704 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 34/397 (8%), Positives = 107/397 (26%), Gaps = 16/397 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 + ++ N + + NI N + + Y RR V Sbjct: 3 GVNSLLNLGTGALFASQSAISVTGDNISNVNTEGYSRRKVRLEERVSINYNPGQLGTGVR 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + ++ + L S + E + ++ ++K + Sbjct: 63 AAEVYRNFDQFVENSYNDKATMRERWDTLYSTLSSVESLF-NESKGYGLNSSLTKFFNDW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S+ ++ + ++ + +V + ++ ++ + + + I+ +++ + + Sbjct: 122 QDLSQRPNDAASRQQLLSDTTNLVNSLHSMQDDMTRYQQQVEDYIKQDVTKANDIMQRIA 181 Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + D+R L++++SEI+ I ++ + T G TL + Sbjct: 182 EINQRINVDQVEGQNNPNALYDERATLVRELSEIMDTKMIDNGKGNITITTGAGQTLVD- 240 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV---PKGKIKALLQIRDSVVPIFQ 287 + + + + + DG + + V Sbjct: 241 GDKHFSLSYDGPQSQNNLTPASNFDGKAYFAGSSEFEYTLECVTAGGMGTAEYRVSLDGG 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + +F+ + ++ G + Sbjct: 301 TTWLKNDDGTVKTFTANAESGAIQVDDLQIWFGTGSDPSTAPATNMSVGDKFNIVPKSAL 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + N + Sbjct: 361 YWVENTSTRENITPQINFAGQDNTRRVTGGSLAGLFN 397 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/408 (10%), Positives = 110/408 (26%), Gaps = 12/408 (2%) Query: 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---- 135 ++ + N + S + + +V Sbjct: 300 GTTWLKNDDGTVKTFTANAESGAIQVDDLQIWFGTGSDPSTAPATNMSVGDKFNIVPKSA 359 Query: 136 ---QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 ++ + A ++ ++ N ++K ++ + Sbjct: 360 LYWVENTSTRENITPQINFAGQDNTRRVTGGSLAGLFNFRDNAVGRYKERMDALTNELVW 419 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 Q + + + + + +++ + G+ D + + S Sbjct: 420 QTNRIHSQGAGLKAHTSLEGTYAVNTDTAALGSGSSGLPFADRLQSGNSLMYFYNSSTGA 479 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + + + + + +D + + + ++ Sbjct: 480 LESSGQIDFSSIAPPG----VQNFDPSVHSLEDVEAAIDASFGTYVDASIVNHKLHITAK 535 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGY 371 + + L L + N D ++ + +G Sbjct: 536 DGYNFQMGTDTSGLYAALGLNTYFSGSQASDIAVNGGVNGDIDFINAGHVNGAGEFNSGD 595 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + T TL+EY ++ + + + + + + Sbjct: 596 NTNAIKMKQMGMTDLDITTAFDGTTKQTLIEYYDGTVAVVGADTGTAKFNKNFQETLASD 655 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++E + GVN+ EE+S LIK + SY + KLI D+MLQTLL Sbjct: 656 LNEKQQSVSGVNIDEEMSNLIKYQHSYTAAAKLITTADQMLQTLLGMK 703 >gi|149927798|ref|ZP_01916049.1| flagellar hook protein E [Limnobacter sp. MED105] gi|149823420|gb|EDM82651.1| flagellar hook protein E [Limnobacter sp. MED105] Length = 437 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 53/488 (10%), Positives = 124/488 (25%), Gaps = 66/488 (13%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 S F + + N A + I N+ NA + + + + Sbjct: 4 SAGGSFQQGLSGLNAAQRGLEVIANNVSNASVVGFKGSEAEFSDVFARAFNGARSTNGIG 63 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + +N ++ + + F ++ ++ + + Sbjct: 64 LGTSLAAVTQNFKQGNINVTGNPLDLAISGTGFFKVQ------AGNGDNIYTRNGQFTLN 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 E N D L +D A + A+++ R + Sbjct: 118 NEGVIVNSRGDKLQGFPVDAA---TGRPSDVAQDILVPRGSIPPAATRSANLELNL---- 170 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 A+ D D ++ S + + + + M +Y + + Sbjct: 171 --------DARATAIDPALAFDPANLNTFNNSTSMTVYDELGGAHIMAIYMRKEASNDWS 222 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 V ++ +++ T Q+ Sbjct: 223 VFATVDGTQVDVGTAPVA--------------------------------VTTAPAQSTS 250 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + G + + + + + + + QY S+ Sbjct: 251 ANLQYGVDGLLTTPNSGNLTVDMSRFVTASGVPFSSTGTAPNQFTFDMSNTTQYGSSFVV 310 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G + + ++ L Y + N + L N GW Sbjct: 311 QNLGQDGFESSPFAGFDVGADGMLTISYANGQLVNHAQIGLYRFPNPEGLQPVGSN--GW 368 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L N S + + F I ++L EL +I ++ Y +++ I D Sbjct: 369 LATNSSGPELVSLSEDTAFGIIQSGALEESNIDLTAELVAMISAQRVYQANSQTIKTQDS 428 Query: 471 MLQTLLEG 478 + QT+ Sbjct: 429 IFQTITNL 436 >gi|66046707|ref|YP_236548.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae B728a] gi|63257414|gb|AAY38510.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 54/479 (11%), Positives = 101/479 (21%), Gaps = 45/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + S G L + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + Sbjct: 121 NMKLQGYNVDANGAVVTGALS------------------------------------DLR 144 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 AS + + + + + T ++T ++ Sbjct: 145 VNASNLEPKATTTITNSANLNSTTALPTVATFDATDTNSYNVKYSTPTYDTQGNAHTLDQ 204 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 T T+ + + S+ S P V + A + Sbjct: 205 YFVKTGTNTWSMYSLMDGRSISDPTSTTPDKNNLTFDSSGKLVTTAGGAVPTDSANIKFN 264 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + G A I + Q S L+ + Sbjct: 265 ADGTFAVTNWVPGVQVGTGTAATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYA 324 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N+ +L Y + ++ + L + W E S Sbjct: 325 TGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVP 382 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 383 VSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 >gi|330986468|gb|EGH84571.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 441 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 50/479 (10%), Positives = 105/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + +L + + T + + Sbjct: 121 GMKLQGYNVDANGSVVTGALS----------------DLRVDSSNLQPKATTPITNVANL 164 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + + D D + N + + Y Sbjct: 165 NSTTALPSLTTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVK--------------TG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|118589967|ref|ZP_01547371.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] gi|118437464|gb|EAV44101.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] Length = 424 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 43/481 (8%), Positives = 105/481 (21%), Gaps = 58/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L V + N S + ++ NI N+ Y R + + + + S Sbjct: 1 MGLFGVMRSGVSGMNAQSSKLGTVAENIMNSSTTGYKRAKSEFSSLVVSQGAGSFNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLS 119 + + + S + Y N + Sbjct: 61 EAHTQYEITKKGNLSFTTSKLDLAIDGNGFFVVGNEAGESFLTRAGHFVPDGDGYLLNTA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L I +++I ++ S + Sbjct: 121 GYYLQGYPIT-GNTAPTTVANGLGGLERINITQNQLEATPTSEA----------FLRVNV 169 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + L + S + N++ + D Sbjct: 170 SEDAAIVPAADLPSANAATASYSHKTSMIVYDNLGNEVKLDVYYSKVTETGTDSDWEVTI 229 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N+ + + + V G + ++ Sbjct: 230 YNAADAAPGGGFPYTAPALNTQTLTFDVTTGNLTGASATSINIAVP-------------- 275 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + ++ + + Sbjct: 276 ------------------------------NGGTFDLDLDQSTYLNADFTVTNVDADGNA 305 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 A L Y + + P+A + + L + N S Sbjct: 306 PSAVKNVEFADDGTLFAVYANGDRRAIYKIPLANVPSPDRLSNRSGNVYST--SFDSGDV 363 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + I V+L EL+ +I+ +++Y ++++ +L+ L+ V Sbjct: 364 RVGFAGEGGMGAIKVGGLEDSNVDLGNELTSMIESQRTYTANSQVFKAGSDLLEQLVNLV 423 Query: 480 K 480 + Sbjct: 424 R 424 >gi|330961196|gb|EGH61456.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 55/478 (11%), Positives = 107/478 (22%), Gaps = 43/478 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + T + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVM 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + + E + N + Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSTG 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D +VV L + + + + ++ Sbjct: 122 MKLQGYNVDANGDVVTGAL----------------GNLRVDSSNLEPKATSTITNSANLN 165 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + D D T T ++T ++ Sbjct: 166 STTALPSVATFDATDT--------------------KSYNTKYSTPTYDTQGNAHTLDQY 205 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T T+ + + S+ + P + V + A V + Sbjct: 206 FVKTGTNTWSMYSLMDGRSISDPTTTTPDKNDLTFDSSGNLVTTAGGAVPTDSANVKFNA 265 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G I + Q S LR + Sbjct: 266 DGTFSVNNWVPGVQVGTGTTATWAANGATGAASIKLDMSDITQTASVSGLLRQDQNGYAT 325 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + N+ +L Y + +K + L + W E S Sbjct: 326 GQLSAMNVDRTGNLFATYTNGQSKTIGQTSLTSFANVQGLAQ--AGGTNWRETFDSGVPV 383 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 >gi|116248740|ref|YP_764581.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115253390|emb|CAK11778.1| putative flagellar hook protein flgE [Rhizobium leguminosarum bv. viciae 3841] Length = 430 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 54/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 1 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + + N + Sbjct: 61 QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + I + L+ V Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAIASSSAYFSGNLNSEATVVTNTTT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ + Q+ L+ S + V + G T + + Sbjct: 181 LPSANTASVTDDTQKMSLVAYDSLGGTVQYDYYFTKTGVTTDASGAVTGSTWEVAV-YRN 239 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T ++ S P D V V++ A + I D V L Sbjct: 240 ADAATGSTTSFPYSSDAVSVATLSFDADGQLTSATDTDIVDPVTAKTVTMDYSDFTQLAS 299 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 FS Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + K P+A + + L + N S Sbjct: 312 ASAVSSVSIGADGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGLSGVT 369 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429 Query: 480 K 480 + Sbjct: 430 R 430 >gi|254502675|ref|ZP_05114826.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222438746|gb|EEE45425.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 477 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 48/496 (9%), Positives = 128/496 (25%), Gaps = 35/496 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + N A + + + +I N+ N+ + R DT + + Sbjct: 1 MGIYGAINSAVSGLSAQATALENISGNVANSQTVGFKRLDTTFSDLVSGGGSTQADQVSG 60 Query: 61 NMFDKVLHAHS---------SAIGQQRLLQSFEALKEM----MSADDHYNNSPTHYISKL 107 + ++ + + + + + +++ Sbjct: 61 TTYATSRATNTIGGDISSNDVDTYMAINGEGYFVVTQAADFVDGSTTFADDTFYTRAGDF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + E Y N S L +D A I+ ++ + + Sbjct: 121 EVNKEGYFVNQSGYYLKGFPLDPATGNP-----VGDNPSVIQINSQPLAASSTTTVNYQA 175 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S V + + + + IG + + + + T Sbjct: 176 SLPRVPATTNYDPNTANSELLNDGANGAPGPNLGATEIGDTGTLEADFLASSISGGSVTA 235 Query: 228 FETVPRDINFEKMN---SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + ++ T +E +++D + V Q+ Sbjct: 236 YNSNGSEVPLNVRWAKVDNTAGAEVWSMYVDTGGEAGTSYYKVGDVTFDGTGQVSALANT 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L ++ + G + G N ++ Sbjct: 296 GATAALGVTTSGTTSFTLDEITVGGVTAGTAGNAADSITISFAN-------GSLTQFADP 348 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + +I Y ++ + P+A +L Sbjct: 349 DGIATSVNLSQNGYAAGELTNIAIDESGRVIASYSNNQTRALYEIPLATFQAEQSLRRV- 407 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + D + + ++ +E S LI +Q+Y+ ++++ Sbjct: 408 ------DGAAFAATSDSGDADLSGGGAVISNALELSNADIADEFSKLIITQQAYSANSRI 461 Query: 465 IMFTDKMLQTLLEGVK 480 + D+ML + L V+ Sbjct: 462 VTSADEMLDSALNMVR 477 >gi|254251198|ref|ZP_04944516.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158] gi|124893807|gb|EAY67687.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158] Length = 655 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 61/459 (13%), Positives = 140/459 (30%), Gaps = 24/459 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVFAEASGQYTSSGYLPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L+ S G S A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNGAQSQGGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I N + + N + ++ +R + ++ +S + + +++ Sbjct: 118 LQNVANNASDPSVRQTAISNGQILADQLNAAGQQYDALRQSVNTQLTNTVSQINTYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N IK ++ + +DQRD+ + +S + G+ + ++ V+ + G L Sbjct: 178 AQLNQQIKAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNDDGY-SVFLAGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 +S + S+ + +++ G + LL R + Sbjct: 237 DKSYQLATVTSSSDPSELTVVSQGIAGANPPGPNQTLPDASLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + + + V Sbjct: 297 AQAQLGAIAVSFAAQVNAQNGLGIDLAGQPGGSLF--TTPAPATYAKQGNTGNAVLAVSF 354 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 ++ + N + + + + + ++ + Sbjct: 355 ADATKPPTSDYTLSFDGTNYTLADRTSGAVIGTSTAMPGSIGGLNFSFSSGSMQPGDQFA 414 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + L S S + G NL Sbjct: 415 VLPTRGALSGFG---LATTSGSAIAAASPVVVSASGTNL 450 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 40/421 (9%), Positives = 102/421 (24%), Gaps = 3/421 (0%) Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 +K+ + + S + Q + S + + S + + Sbjct: 236 ADKSYQLATVTSSSDPSELTVVSQGIAGANPPGPNQTLPDASLSGGTLGGLLAFRSQTLD 295 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ LG + A +V + + + Sbjct: 296 PAQAQLGAIAVSFAAQVNAQNGLGIDLAGQPGGSLFTTPAPATYAKQGNTGNAVLAVSFA 355 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 D D + L + I T + ++ Sbjct: 356 DATKPPTSDYTLSFDGTNYTLADRTSGAVIGTSTAMPGSIGGLNFSFSSGSMQPGDQFAV 415 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + +S + + ++ V +Q ++ Sbjct: 416 LPTRGALSGFGLATTSGSAIAAASPVVVSASGTNLGTGKIVQGGVTAGYQIPTTKLTYDA 475 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 P I + + + + + N + G+ Sbjct: 476 ATKTLSGFPAGTTVTIAGTPPTTVTISNPTDPVPYDPTAGAKMTMSGTMNGVTVTLSGTP 535 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S + + Y + ++ + + + + TL + + + S Sbjct: 536 S---NGDSFTIGPYAGGTSDGSNALALSQLVNAKSLGGGTTTLTGAYASYVNGVGNTASQ 592 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 593 LKSSSAAQTALVGQITTAQQSVSGVNQNEEAANLMQYQQYYQANAKVIQTAATLFQTVLG 652 Query: 478 G 478 Sbjct: 653 L 653 >gi|289679013|ref|ZP_06499903.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae FF5] Length = 560 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 53/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L + ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + +++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R ++K++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T N + Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413 >gi|330953732|gb|EGH53992.1| flagellar hook-associated protein FlgK [Pseudomonas syringae Cit 7] Length = 686 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 51/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L + ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--NATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + ++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLNTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R +++++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I + + I +T N + Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSAEAITQRSIGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFTVRRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAA 413 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 82/309 (26%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + +S + + T Sbjct: 378 RRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVLTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + ++ Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVS 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S++ + G + G + I + S+ +F + Sbjct: 498 STGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTIKLNVGYTDTTTTPSSSTAFQLEM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGW 410 + ++ + ++ + N +L +++ Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVVNGGVGTSLSGSYADTVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + V + S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|283956843|ref|ZP_06374316.1| putative flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 1336] gi|283791569|gb|EFC30365.1| putative flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 1336] Length = 608 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 146/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ + + + S D N + + Sbjct: 61 AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESINNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYKDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + A Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S +++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 59/392 (15%), Positives = 128/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K+K D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYKDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A + A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|330972421|gb|EGH72487.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aceris str. M302273PT] Length = 686 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 50/417 (11%), Positives = 133/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L + ++ + + + + ++ ++ Sbjct: 62 SDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLL--SDSATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + ++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLNTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R +++++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + + +T N + Sbjct: 297 TAMVLSDQVNSQMSQGIDSKGNFGSNLFSSINSADAITQRSVGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAA 413 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 81/309 (26%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + +S + + T Sbjct: 378 RRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVLTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + ++ Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVS 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S++ + G + G ++ I + S +F Sbjct: 498 STGVQSYTLINASGGAVLDQNGNAVSGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGW 410 + ++ + ++ + N +L +++ Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVVNGGVGTSLSGSYADTVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + V + S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|66046700|ref|YP_236541.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae B728a] gi|63257407|gb|AAY38503.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] Length = 686 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 136/417 (32%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L + ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + +++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R +++++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T N + Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAA 413 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + +S + + T Sbjct: 378 RRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGASGISVALTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + + Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVVNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVN 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S++ G + G I I + S +F Sbjct: 498 SSGVQSYTVIKANGGAVLDQNGNAIGGSIIQGQANTVKLNVGYTDTTTTPNSKTAFELQM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410 + ++ + ++ + +L +++ Sbjct: 558 TISGSPVANDTFSIGLTGGGSSDNRNALAVVGLQTAKTVGVINGGVGTSLSGSYASTVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + V + S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|330961205|gb|EGH61465.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. maculicola str. ES4326] Length = 686 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 131/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYLGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L + ++ + + +D+ + ++ Sbjct: 62 SDVRRIYNSYLDTQLQSSTALSADAVAYSGQAGKTDTLLSDNAS--GVAVQLGDFFSKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + + A + FN+ A ++ + + ++ + + + Sbjct: 120 GIATNATQASDRSSFLTQAGALSARFNSVASQLSSQNDNVNAQLTTFTKQVNELTNTVAG 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LD R +++++E++G+ + N N + + + + Sbjct: 180 LNKQITQASVGNSTPNTLLDSRSEAVRQLNELVGVKVVENNGNYDLYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R V+ N+L Sbjct: 240 YKMSASPSPSDPLQFNVQVAY---GQTQTDVTSVITGGSIGGLLRYRSEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T N + Sbjct: 297 TAMVLSDQVNSQLNQGIDSKGNFGSNLYSSINSADAITQRSIGKTANSLGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFSDTSNFTVRRLPNGESVGAGALSDNPPKQFDGFSVSLNGNTLAA 413 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 37/309 (11%), Positives = 80/309 (25%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + A + +S + + T Sbjct: 378 RRLPNGESVGAGALSDNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVMTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + ++ Sbjct: 438 DIAAAAPLTATAGASNAGTGSFTQPVLNTKSDIYSSTRTADLRNALKDSTPMKLVMGAVS 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S+S + G + G + I + S +F + Sbjct: 498 STGVQSYSLINASGGAVLDQNGNAVGGSIIQGQTNTLKLNVGYTDTTTTPGSKTAFQLEM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAGINTNVTLLEYARNSIGW 410 + + ++ + ++ + VA +L + + Sbjct: 558 SISGSPVVNDTFSVGITGSGSSDNRNALAVVGLQTAKTVGVANGGAGTSLSGSYADLVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S + + V S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|86149406|ref|ZP_01067637.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596766|ref|ZP_01100003.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218563069|ref|YP_002344848.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840188|gb|EAQ57446.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191607|gb|EAQ95579.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360775|emb|CAL35574.1| putative flagellar hook-associated protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926674|gb|ADC29026.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni IA3902] gi|315927413|gb|EFV06751.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929004|gb|EFV08247.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni 305] Length = 608 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 145/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S +++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 60/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A D+ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N K Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYKKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|86360902|ref|YP_472789.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86285004|gb|ABC94062.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 430 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 114/481 (23%), Gaps = 52/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 1 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + + N + Sbjct: 61 QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + I + L+ V Sbjct: 121 GYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLNSEATVVTDTTT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ Q+ L+ S + + + Sbjct: 181 LPSANTSGVTDDTQKMSLVAYDSLGATVQYDY-----------------YFTKTGVTTDA 223 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T ++ ++ + + S Sbjct: 224 SGAVTGSTWEVAVYRNADAATGGTTSFPYSSS---------------------------- 255 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + L A +D + I+ Q S+ S Sbjct: 256 ---AVSVATLSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLASDFSATGS-ADGQA 311 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + K+ P+A + + L + N S Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGTTKSLYQIPLATVASPDNLTLLSGNVYT--ANGMSGVT 369 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429 Query: 480 K 480 + Sbjct: 430 R 430 >gi|77457733|ref|YP_347238.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens Pf0-1] gi|77381736|gb|ABA73249.1| putative flagellar hook-associated protein [Pseudomonas fluorescens Pf0-1] Length = 681 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 138/402 (34%), Gaps = 15/402 (3%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ N + +S A NI N D Y R+ T+ T+ Sbjct: 2 SLLNIGMSGLAASSSSLAVTGNNIANVDTAGYSRQQTVQGTKSSIQYGNVFIGTGTTLAD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + L +S + + + + N T + K S++ Sbjct: 62 VRRVYNSYLESQLRTATSLNSEAAAFGAQATALD--GSLSDTNTGLTGVLQKFFTSMQGV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + ++D ++V+ A+ + FN A+++ A + + S + + + + +N Sbjct: 120 STSATDDTSRQSVLTGAQALTSRFNALAKQMNDQNATLNGNLSDMASQVNKLATSIATLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I + S +D LD R+ ++++SE+ G + R + +Y G L + Sbjct: 180 QKIGEISTSGGQPNDLLDSRNEAVRQLSELTGAQVVERGTSF-DIYIGSGQPLVIGNTTN 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + I +D + + SA+ G+I LL R V+ N+L +A Sbjct: 239 TLSTVPLKGDPSR--MGIQMDRGSSTIDITSAMTGGEIGGLLTYRKEVLDPALNELGRVA 296 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 V+ + + + G I + I + I+++ + + G Sbjct: 297 LVVADQINRQQAQGIDKNGDFGAAIFNNINSAALISQRSIAQSGNSAGSGNLDVTIKDTG 356 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + Y + D + + P I+ Sbjct: 357 KLTTSDYQVTFTSATNYTVKRSDGTDMGSFSTTTTPPPVIDG 398 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 37/391 (9%), Positives = 94/391 (24%), Gaps = 5/391 (1%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + D N I K D + N++ L ++ Sbjct: 296 ALVVADQINRQQAQGIDKNGDFGAAIFNNINSAALISQRSIAQSGNSAGSGNLDVTIKDT 355 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + ++ ++ + + + D F T + + +S Sbjct: 356 GKLTTSDYQVTFTSATNYTVKRSDGTDMGSFSTTTTPPPVIDGFTLALNGGALSAGDTFK 415 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N + T + + + T + + + + + Sbjct: 416 VTPTRNAASSIQTVLTDPKKIAAAGPLTGVASANNSGTYTQPTLTDVVDIYNPASQAELQ 475 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 AL + ++ + Sbjct: 476 ----NALKYSTPVKLVFGATTSGSQTYNMVDAKGATIGSGVIVPGQANTLNLKIGMVDST 531 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + I + + + + + F N+ A + Sbjct: 532 GAPVMDTTVIPNVQKTFTVQTTVGATPKSGETFTINLTGAASSDNRNAQALVGLQTKQTV 591 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 D ++L + + + + S + V+ + + + VNL EE Sbjct: 592 DTGTASKG-ISLTDAYNKLVTNVGTQAAQSKSDSAATTVILDQAQGARDSLSQVNLDEET 650 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+K +Q Y S+++I + TL+ + Sbjct: 651 GNLVKYQQYYTASSQIIKAAQETFATLINSL 681 >gi|260597445|ref|YP_003210016.1| flagellar hook protein FlgE [Cronobacter turicensis z3032] gi|260216622|emb|CBA29917.1| Flagellar hook protein flgE [Cronobacter turicensis z3032] Length = 410 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 114/476 (23%), Gaps = 71/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D V + F L + + + +S N+ Sbjct: 62 GDGVTTNTGRKLDVAISQNGFFRLLD------SNGGVFYSRNGQFKLDEKSNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + VQ I L I + S+ T N + ++ Sbjct: 116 VTGYPATGTPPTVQQGAD--------------PIPLTIPTAQMPASQTTSANFVMNLNSS 161 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A D + S + + + N +++ +Y N Sbjct: 162 DDVPAQTPFDPANSSTFNKSVPLTVYDSLGNEHNLKLYYVK--------------TADNK 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + V + + + G + + + + + SFS Sbjct: 208 WDVYNMDTSVSSATPTTPLTSLTFSDSGALTGITNAAPAGSQQVPISVTSLNGSAAFSFS 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 Q L + K Sbjct: 268 MNLTGTT--------------------------------QQNSGANVLLTSNQNGYKPGD 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ +Y + ++ +A L N W S L Sbjct: 296 LVGYQVNEDGSLVGNYSNEKSQLLGQIVLANFANPEGLSSQGDNV--WSASTASGVALLG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 354 SAGTGNFGKLTSGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 409 >gi|56460252|ref|YP_155533.1| flagellar hook protein FlgE [Idiomarina loihiensis L2TR] gi|56179262|gb|AAV81984.1| Flagellar hook protein FlgE [Idiomarina loihiensis L2TR] Length = 449 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 50/473 (10%), Positives = 119/473 (25%), Gaps = 26/473 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F A + N + + NI N + + Sbjct: 2 SFKIALSGINASQKDLDVTANNISNVKTSGFKQSRAEFA---------------DVYATS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + +A ++ +G L S + NS IS + + + Sbjct: 47 IFNAGNTKVGDGVLTSSVAQQFSQ-GTLEFTENSLDMAISGNGFFATTDGLGSRDMTYTR 105 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + +Q + D + ++ + V A Sbjct: 106 SGAFKLNDDKFIVDNQGNYLQGYQVDRNSGTNSSVALATTQPIRIPDV--------AGAP 157 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + + + S I G + +S T+++++ Sbjct: 158 QSTDNVFTAFNVDARRSPIDGAANPFDPETPSTYQSSTSATVYDSLGESHTLSTYYVKRD 217 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ + + A + + F D +F Sbjct: 218 NNQWDVYATFDGDEIDMTPTGTATASPDASVNGYAGLRVEFLGSGDPDVAAGQNTFDPGS 277 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + ++ +G + Q+ S+ S Sbjct: 278 IDLSGNNVDGDPYLNNGADAQTIQFNFQDLTGTTTPTQFASDFEVTALDQDGSTVGRLTN 337 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + + L + W E S + Sbjct: 338 VDIDKSGLIAATYSNGDVQYLGQVAIVRFANEQGLTQIGG--TKWRESIDSGEPLSGEAN 395 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I S VNL +EL LI ++++ +++ + + + QT+L+ Sbjct: 396 TGTFGGIEASALENSNVNLTKELVDLITAQRNFQANSRSLEVNNTINQTILQI 448 >gi|239996708|ref|ZP_04717232.1| Flagellar hook-associated protein [Alteromonas macleodii ATCC 27126] Length = 680 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 58/427 (13%), Positives = 139/427 (32%), Gaps = 14/427 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MS + +F+ A + N +S+ + NI N + YVR T S V + Sbjct: 1 MSSVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELQNSQVFGVEIGNTERII 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L +++G+ S A + + A + NS + +S+ +L++ + + + Sbjct: 61 NVFAQNQLRRDITSVGELEAFSSKTAAIDNLLASEA--NSISQGLSEYFAALQTAADDPT 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 V+ +E + Q T + + + + + E ++ + + +N I Sbjct: 119 NLASRDQVLGKSESLYQRMKTLSDYMLEKEEELNLEFTSMVNRANTLIGNIGDLNRNIVI 178 Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDI 235 + L++RD + +++ I+GI+ N + + + G +L Sbjct: 179 ANGNNTSDQPSALLNERDQAIDELASIMGITVKESTTQNGAVTINLTSGESLVLENGAFN 238 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290 FE + +T + + + + S G + L R+ ++ + Sbjct: 239 LFELNTNADLTFKQLKLETNFGSQTKADASIRIVEDDLGGALGGLFGYRNEILGPAMRDV 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +++ + + ++ + + + G I D + + + Sbjct: 299 GQLSVAFADAMNTQNKLGMDLDGQLGSNIFDIPSFRGLAYSDTNGDYVVTAQITEGKGAE 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 L D + + I I +N + G Sbjct: 359 LTDADYKIEVTAVTAGVPSQI--EITLLNADGTPKKDASGNDIIYSNYAVTAGFNELPGG 416 Query: 411 LEKNRSD 417 +E + S Sbjct: 417 IEVDFSG 423 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 46/365 (12%), Positives = 104/365 (28%), Gaps = 23/365 (6%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + D + I + EV + A +IE+ + N + ND Sbjct: 339 SDTNGDYVVTAQITEGKGAELTDADYKIEVTAVTAGVPSQIEITLLNADGTPKKDASGND 398 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I A ++ + S + + TL P D+ Sbjct: 399 IIYSNYAVTAGFNELP---GGIEVDFSGTDPYTVGNEFLIQPTKDIASKITLETNRPEDL 455 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 F + + V SN Sbjct: 456 AFASPVRAGANNTNLGSANVIDVTVSNTEVGASAFDGAG--------------------G 495 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +L + ++ + A ++ +V + ++P + S Sbjct: 496 LLNSAPAQINFTAADTYDVVDGSGNVLATVTGTTDLTNLISQAGISPDPGFDLSLDGVPK 555 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + + N+N NT T + + +G + ++ Sbjct: 556 AGDSFSISYNTDGFNDNSNALNLAAIQNENTAQVSSEATNTPRTFQDAYASMVGRIGEDA 615 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + ++ + + + GV+L EE + LIK +QSY + +++ ++ T+ Sbjct: 616 SMAKVTLASAEAMKVQSQNWFESVSGVSLDEEAANLIKYQQSYAAAARILSTAQELFNTI 675 Query: 476 LEGVK 480 L+ + Sbjct: 676 LQSAR 680 >gi|30248322|ref|NP_840392.1| flagellar hook protein FlgE [Nitrosomonas europaea ATCC 19718] gi|30138208|emb|CAD84216.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 410 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 106/473 (22%), Gaps = 64/473 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + AS + NI NA+ + + N + Sbjct: 2 GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFADVYANALGGGRNQI------- 54 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ + + + + L Sbjct: 55 ---------------------------------GIGTQLAAVAQEFNQGNVTPTNNPLDV 81 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + N + N + + + SN I + Sbjct: 82 AITGNGFFRMDNNGSISFTRNGQFHLDKDGFLVNASNYNVTGFGADASGQIIPNIPVNLR 141 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + S + G++ R + + N ++YT Sbjct: 142 LPTADM----TPNPTTSFMTGVNLDARADVVTDPF---------------NVANPDTYTH 182 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ G N + D V L + SF+ Sbjct: 183 STSGEIFDSFGNSHILNLYFQKTAASTWGVYTAVDGTVVDPSTGLSGTDSPITLSFN--- 239 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P + + + Q+ S Sbjct: 240 PSGIMTSTGSSTINVAASVLGAGVSPLAFELDLTRSTQFGSKFGVNVMSQDGFASGRLAG 299 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +++ + Y ++ + +AG + L N W E S + Sbjct: 300 YSISDDGQIRASYSNNVTRTVGQLVLAGFSNPNGLKPLGSNQ--WGETAESGLPLVGTPE 357 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V + S V+L EL LI ++ Y + K I D ++QT++ Sbjct: 358 TGVLGSLQSSAVEESNVDLTTELVTLIMTQRVYQANAKTIETQDAVMQTIMNI 410 >gi|300312833|ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] gi|300075618|gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 50/483 (10%), Positives = 119/483 (24%), Gaps = 75/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55 F + + + AS+ I N+ NA + + + N VT Sbjct: 2 SFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVTV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + ++A+ F + ++ + + + + Y Sbjct: 62 ANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPR----YGRNGQFQLNKDGYL 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S + T + + L+I + T V+ Sbjct: 118 INPSMNGAYLTGYPAG------------------TNGGDPVPLKIDTATLPATATTRVST 159 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D + S + + N + + G Sbjct: 160 KVNLDSRKSVPTVSPFDPANPNSYSNSTGATVYDSLGNPYSLQTFYVKG----------- 208 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T S + ++ + ++ L+ + + Sbjct: 209 ----AATGTPPSTTWSVYATLDGKTIINAPPATGPQLLGTLRFDATGALTASTGMSLNLS 264 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L I+ + Q S + L Sbjct: 265 TLAK--------------------------GGATFPGPIALGYAGSTQTGSAFANLAQSQ 298 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ +I Y + + + L N + Sbjct: 299 DGMPPGTLSSFSIGKDGSIIGAYSNQQTRVMGQIVLVNFANPHGLQPIGNNL--YQASEA 356 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + S + + F + V+L EL +I ++ Y +++ I D +LQTL Sbjct: 357 AGSALVGTPTTGAFGALQGRAVEQSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTL 416 Query: 476 LEG 478 + Sbjct: 417 VSL 419 >gi|90577344|ref|ZP_01233155.1| flagellar hook protein [Vibrio angustum S14] gi|90440430|gb|EAS65610.1| flagellar hook protein [Vibrio angustum S14] Length = 408 Score = 117 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 51/474 (10%), Positives = 115/474 (24%), Gaps = 67/474 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + + + Q +I NI N + T + + + Sbjct: 2 SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFSAVYNGMQAGGVEVA---AISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S G R L + DH + ++ + + L Sbjct: 59 NFDKTGSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFNSDKDNNIVSNNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + L V N I + Sbjct: 119 YTV---------------------------------DANNNLQAGAVDNLKITTASLQAK 145 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D + L + S I + N +S + +++++ + S Sbjct: 146 ATDDLAFVAN-LDARSSVINPATNPFDPNATDSFNSSYTSKVYDSLGNPHTVTQYFSKRE 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + N + + + +E+ Sbjct: 205 EYDPNSP----------------------------NTTANRWDVNVVVDGDDANITTEEI 236 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + I+ I Q+ ++ + + Sbjct: 237 IFNTDGTLQSPTAPFAVNFNPAGADAANINIDIAGTTQFGADFGVSTNAPNGYTSGELAG 296 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L++ N W++ S + S Sbjct: 297 VRVEDNGMVFATYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 354 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EL L+ +++Y + K I +DK+ Q+L V Sbjct: 355 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 408 >gi|298487857|ref|ZP_07005897.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157582|gb|EFH98662.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 441 Score = 117 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + R ++NL + ++ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTASWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|313634367|gb|EFS00963.1| flagellar hook-associated protein FlgK [Listeria seeligeri FSL N1-067] Length = 479 Score = 117 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 61/482 (12%), Positives = 133/482 (27%), Gaps = 36/482 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47 M L FN + + + A +NI N + Y+R+ + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + + + + N P+ + Sbjct: 60 YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +KN + ++ + N ++++ + E + +L + Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +L +N AI A + +D L+QRD +L +S GIS NN V + G L Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236 Query: 228 FETVPRDINFEKMNSYTV----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + +G + +S + + +A ++ + + Sbjct: 237 VVQGDETTEITSTRTASGFEFSVGGQTLHMPEGSISASVRVNQNEIKSYQAKIETFSNGL 296 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + + I +K A + +++ + L Sbjct: 297 AKALDDIQVKNVNKIMDDLQKIGDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356 Query: 344 YRSNPSFLRDGGSVS---------------KKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + G+ + W + + + Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWTINPAISNNAENKQFLGVIAADIAS 416 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T + I + + S S + +SES S+ GVN+ EE+ Sbjct: 417 LKTDKNIEGTTFPNFMDGIITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476 Query: 449 SF 450 + Sbjct: 477 TN 478 >gi|330943214|gb|EGH45621.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. pisi str. 1704B] Length = 686 Score = 117 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 53/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L + ++ + + + +D + ++ ++ Sbjct: 62 SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + +++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R ++K++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T N + Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 34/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + +S + + T Sbjct: 378 RRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGAAGISVALTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKSSTPMKLVMGAAN 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S++ + G + G + I + S +F Sbjct: 498 SSGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410 + ++ + ++ + +L +++ Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVAGLQTAKTVGVINGGVGTSLSGAYASTVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + V + S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|32490790|ref|NP_871044.1| hypothetical protein WGLp041 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165996|dbj|BAC24187.1| flgE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 410 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 124/474 (26%), Gaps = 65/474 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + N N+A+Q I NI N+ + + V Sbjct: 2 SFIQGINGINSAAQALDVIGNNIANSQTIGFKSSYVSFSDIFSGSMVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + ++ S ++ + S + + + Sbjct: 50 -------------LGSQLSNVTQNFASGSMVTGSKNLDMAISGNGFFRLSDSGGKIYFTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 Q N + + +A + S++ + T +N + Sbjct: 97 NGEFKLNSHRQIVNLQNKFLTGYQARGNPPSIDSGSSIENIIIPSTSMNP---VVSTEGE 153 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + DV I I + + + + + Sbjct: 154 IHGNLKSDVDVPKNSIFNIKNPKSYNFTTQLEAYDSLGKKHVIKIFFVKQEAQGNWMVHG 213 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 E++PI D + +N S + Sbjct: 214 YDETSPIVDDSKNIKTNPIL-----------------------------------ISFDE 238 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 +I+ LD + + QY S+ + +N Sbjct: 239 NGNLKKSENSNKYISIDGSSLDGSDPLKVEINLEEMTQYSSDNQINYQKINGHGVGKFND 298 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 N++ +I +Y + + +A N+ L N WLE S + + Sbjct: 299 YNVSDSGKIIANYSNGQTQLIAQIAMANFTNNLGLTPNGENC--WLESAESGPAIIGLSE 356 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F IS + V++ EL ++ + +Y + + I D++LQ L+ Sbjct: 357 TGSFGRISGQKLESSNVDISNELVKMMTQQSNYQSNAQTIKTQDQLLQILVNMK 410 >gi|241113584|ref|YP_002973419.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861792|gb|ACS59458.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 430 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 53/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 1 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + + N + Sbjct: 61 QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + + + L+ V Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAVASSSAYFSGNLNSEATVVTDTTT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ + Q+ L+ S + V + G T + + Sbjct: 181 LPSANTASVTDDTQKMSLVAYDSLGGTVQYDYYFTKTGVTTDASGAVTGSTWEVAV-YRN 239 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T ++ S P D V V++ A + I D V L Sbjct: 240 ADASTGSTTSFPYSSDAVSVATLSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLSS 299 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 FS Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + K P+A + + L + N S Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGLSGVT 369 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429 Query: 480 K 480 + Sbjct: 430 R 430 >gi|289627763|ref|ZP_06460717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651647|ref|ZP_06482990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] gi|330866422|gb|EGH01131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 441 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFTQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + R ++NL + ++ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|148980302|ref|ZP_01815989.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145961321|gb|EDK26631.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 408 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 54/474 (11%), Positives = 120/474 (25%), Gaps = 67/474 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + N ++ + +I NI N + T + Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAGGVEVVG---VSQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G R L + +D + + + S L Sbjct: 59 NFEKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAALQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D L + V + A + Sbjct: 119 YSVDGNN-------------------------------NLLLGSVGTVQISTASLQARET 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D+ +F+ D Q + S N+ +S Sbjct: 148 DSIEFVANLDAREQVPASAFDYSDSSTYNH------------------SYTTPVYDSLGN 189 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + F+ G + V I + + P + Sbjct: 190 PHTVSQYFVKGASNDWDVHILVDGKAIDGADALVPAASPTATDT-------------ANF 236 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + G + + ++ + Q+ S+ ++ + S + Sbjct: 237 TFNADGTISSGGNYSVSFDPANGANSVTVNIDLSAVTQFGSDFVVSKNSPNGSTSGDYAS 296 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A + +++ + WL+ S + L Sbjct: 297 VRMENDGRIFATYTNGQSQLQGQVVLADFASPQNMIK--TSDTAWLQSFSSGTPVLGTAG 354 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 VF ++ V+L EL L+ +++Y + K I +D++ Q L V Sbjct: 355 SGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANTKSISTSDQLTQALFNVV 408 >gi|54297182|ref|YP_123551.1| flagellar hook protein FlgE [Legionella pneumophila str. Paris] gi|53750967|emb|CAH12378.1| Flagellar hook protein FlgE [Legionella pneumophila str. Paris] Length = 437 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 52/482 (10%), Positives = 126/482 (26%), Gaps = 58/482 (12%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56 FN A + +++ I NI N+ + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +++ L ++ + F L + + + + E+Y Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKVYTRAGQFKLNNENYIV 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + L + D+ + ++ +++ A+ +S S+ N Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANIPPRASSNVSVGVNLSSQSKAPNV- 170 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + N +Y S G + ++ Sbjct: 171 ----------------------DWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + S + V+ + + A QN + Sbjct: 209 DSTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 S ++ +P I + +S + + Q+ S + + Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSNPLSLSIDLSDSTQFGSPFAVQSTFNN 316 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + + + +A +L W E S Sbjct: 317 GYTTGSLAGLDIDDSGVIYGRYTNGQSLSMGQIQLANFADPESLQNLGN--TNWAETTSS 374 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + I+ V+L EL LI ++++ + + I D + QT++ Sbjct: 375 GQPLISAPGSGGLGLINSGRLEESNVDLTSELVNLISAQRNFQANAQTIRTGDAITQTII 434 Query: 477 EG 478 Sbjct: 435 NI 436 >gi|86153170|ref|ZP_01071375.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni HB93-13] gi|85844055|gb|EAQ61265.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. jejuni HB93-13] Length = 608 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 55/514 (10%), Positives = 145/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ + + + S D N + + Sbjct: 61 AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKINGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S +++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 59/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A D+ A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ LI+ + SY + K++ D+ML TLL Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|57505236|ref|ZP_00371165.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter upsaliensis RM3195] gi|57016372|gb|EAL53157.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter upsaliensis RM3195] Length = 608 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 61/514 (11%), Positives = 161/514 (31%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + A + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFATLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ L D N + + + Sbjct: 61 AIESIVRLHDEHAYFKLKNASTQQEYTGYLGQVLEEISQRF-PDLKNKGILNNLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ +++ + + ++ N + ++KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVNATKTLAESINEAHSTLKKIQQKVNDDIKSTVEEINRIGEEI 179 Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A D A++ D+RD L +S+++ TI + Sbjct: 180 AHINKQIYGEEALPTDHANELRDRRDELELTLSKLVSAVASKNEIVQNNRFEQTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 HYNLSIEGFSIVDGVNFHPLKLD---YDDKNKSYSIYYQTPDEKIHDLTAKLKGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDP----------------- 306 L +R + ++ + + L+ ++ LI + Sbjct: 297 LDLRGRDYDKLEGAYDNGILQGYIDSLNTFSKTLITETNNLYAGSAKNSVTSDYLEGLTG 356 Query: 307 -IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + I D K + + ++I ++ N + + N Sbjct: 357 DVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMNQIKANTDDNGNKNN 416 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL---EKNRSDSHDLH 422 ++ + DS + + +F A V+L + N G Sbjct: 417 QDDVDDFINASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSGKDASDI 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + + + S ++ GV+ +++ +I+++ Sbjct: 477 RVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQ 510 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 4/257 (1%) Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 G R I + + N + + +IKA D+ Sbjct: 355 TGDVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMNQIKANTD--DNG 412 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 Q+ +D+ + +G + ++D S + Sbjct: 413 NKNNQDDVDDFIN--ASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSG 470 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S+ S + + D+ N F G +T+ E Sbjct: 471 KDASDIRVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQYDKVSFYNKDGTIDELTMEE 530 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 Y R G + + +++ +H + ++N + Y + GVN EEL+ LI+ + SY + Sbjct: 531 YYRKFTGKIASDGENNNVIHKSNMTLYNSVYAEYQSKSGVNTNEELAALIQWQSSYGAAA 590 Query: 463 KLIMFTDKMLQTLLEGV 479 K++ D+ML TLL Sbjct: 591 KIVSTVDQMLDTLLGLK 607 >gi|330889085|gb|EGH21746.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 441 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFTQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + R ++NL + ++ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISNPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|254461659|ref|ZP_05075075.1| FlgK flagellar hook-associated protein 1, putative [Rhodobacterales bacterium HTCC2083] gi|206678248|gb|EDZ42735.1| FlgK flagellar hook-associated protein 1, putative [Rhodobacteraceae bacterium HTCC2083] Length = 1431 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 119/339 (35%), Gaps = 22/339 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--------------MTTISPE 48 + ++ + ++ + + +NI NA+ + Y RR+ + + + Sbjct: 1 MASLLDIGRSAVSAQREALNVTGQNIVNANTEGYRRREASLTEVSDIKSELTSVMSQTGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + R + + ++ + L+++ + ++ Sbjct: 61 GVKLGEIRRAYDSFLSESKRGATARFESSDAF--VKKLEQLEDTILPTDGDLGVTLTAFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DSL + + I+ V +FNT+A + + +EIE+ ++ + + Sbjct: 119 DSLSEVAAQPGDRAPRALAIEVGHTVSNSFNTTAMMLNDLGEGTFQEIEMRLAEASQNIE 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L +N ++ + H LD+RD + +S I+ ++ + ND+ + G+++ Sbjct: 179 VLGKLNAQLRSSNFGANPPHSLLDERDRFIDTLSGILPVNVTIGERNDVELRL--GSSVA 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V K S +T + F G S + +++ L+ Sbjct: 237 GPVILTGADAKTLSAMMTDQGAVAFRIG---SGQIVPQLESAELRGLVDAF-ETTQRAIL 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +LDE+AR + + + + G + + Sbjct: 293 ELDELARNFSTQMNRQHAQGVDLDGDLGRELFSTAQFTP 331 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 37/373 (9%), Positives = 109/373 (29%), Gaps = 14/373 (3%) Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++ + + + + ++ + ++I A +L E Sbjct: 1068 AVVGGQLSGQGPVAVADETAQQFGLGATQSKASLQGREILAGLADGEYQFDVDLNGIEHE 1127 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 ++V + F A + + V + +S + + V S+ Sbjct: 1128 VSVAVEDGTFAITLPQSAQGLISAQIVSTSSGQSALSLSVLQSQMGALSVSPSEAAQKLG 1187 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ N + + +D V G A +R + +P + Sbjct: 1188 FKVGTVDLTVQNGILNARSTGGVAVDIVA----------GGVSSAESYVRLNDIPDEELI 1237 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + +E + S+ G + + + Sbjct: 1238 VVMGGQGAKRLAAEFETGPVMSDADRGSAQFRIEMIDAETGRVELFDLDSGASIATRTSN 1297 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYAR 405 + + ++ G + + + D +A N + + R Sbjct: 1298 GVTHFNVSGQNIEFSGFAETGDSFELATGQRAPGDSRNMDVLAAYGQNRAGITSFQDDFR 1357 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + + ++ ++ V++ + S GV + +E + L+ +Q+Y + +++ Sbjct: 1358 NIASEVGATLEAARLTNLSNEAVYDAAVAAESELSGVKMDDEAAQLMSQQQAYQAAARIL 1417 Query: 466 MFTDKMLQTLLEG 478 ++ T+L+ Sbjct: 1418 QTARELFDTILQI 1430 >gi|71736953|ref|YP_275563.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484949|ref|ZP_05638990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71557506|gb|AAZ36717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325093|gb|EFW81162.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] gi|320329352|gb|EFW85345.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|331011042|gb|EGH91098.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 441 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + R ++NL + ++ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 >gi|323697478|ref|ZP_08109390.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. ND132] gi|323457410|gb|EGB13275.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans ND132] Length = 711 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 91/276 (32%), Gaps = 12/276 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ + + + Q NI N + + Y RR V Sbjct: 6 NSILDMGRWALFASQAQLQVTGENIANVNTEGYSRRSVNLEEGTYIDYSPGQLGTGVKAT 65 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 M + + SS L E + ++ ++ + +S+ +S Sbjct: 66 EVVRSFDEMVEAMYLQQSSLSNMWGNLFEQLQGVEDLL-NESSDSGVSDALSQYFNSWNE 124 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S+ +TV+++A ++ + ++ + E+ +++ + ++ + Sbjct: 125 VSQRPDNYGARQTVVNDAATLITTLKAVETNLSLMQERINSEVASQVAEANSLMEDIADL 184 Query: 174 NDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N I+ ++A+ D+R ++ ++E++ + TI + V T G TL + Sbjct: 185 NKEIQIHDVPGQNNANALYDERARKVRALAELVDVKTIDNGGGNFTVLTQSGQTLVDGAS 244 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + T + F + N Sbjct: 245 SFSLDFRSATKTTDLRPDSTFEGNIYFDGNDDYEYT 280 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 48/393 (12%), Positives = 110/393 (27%), Gaps = 10/393 (2%) Query: 90 MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 SA ++ + + S + + + + + + ++I Sbjct: 325 FSAREYDDRVNVEGLQIWFGSATDSQGSPTGTFVDGDRFIISPHQGLYWVQNTSHAEEIT 384 Query: 150 ADADKEIELEISNLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 E L N K+++ + + + + + + + Sbjct: 385 PQLHFNGEENTERLTGGSIAALLSFRDNYVGKYRSKLDELSGTVIWETNRRHSQGAGLQA 444 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + + + G+ D + + + S + + + Sbjct: 445 FTVADGTYGVDYIDKALGSDSTGLAFGDKLQSGSSFMYIYNASTGLLASSAALDFDGSGG 504 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 +I L +RD+ + ++ +D A + Sbjct: 505 TFNPEIHTLEDVRDAFNRTYAGAINATIVNNKLRLEAEDGYTFAFGTDTAGLYAGLGLNT 564 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 K S I + + + G + Sbjct: 565 FFKGDDANSMAINEKITSDLD-------YLATGHVNGAGEMNTGDNTTALSMYALREVSV 617 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 T+ T+L+Y +G + + + + Q + N +++ GVNL E Sbjct: 618 TTSTAFEGTTSQTILDYYNGIVGNVGTDTNRAQFNQNFYQTLANDLNDRQQEVSGVNLDE 677 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 E+S LI+ + SY + KLI D+MLQT+L Sbjct: 678 EMSDLIRYQASYTAAAKLITTADEMLQTILSLK 710 >gi|315639201|ref|ZP_07894363.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter upsaliensis JV21] gi|315480527|gb|EFU71169.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter upsaliensis JV21] Length = 608 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 60/514 (11%), Positives = 161/514 (31%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + A + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFATLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L S+ L D N + + + Sbjct: 61 AIESIVRLHDEHAYFKLKNASTQQEYTGYLGQVLEEISQRF-PDLKNTGILNNLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ +++ + + ++ N + ++K++ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVNATKTLAESVNEAHSTLKKVQQKVNDDIKSTVEEINRIGEEI 179 Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A D A++ D+RD L +S+++ TI + Sbjct: 180 AHINKQIYGEEALPTDHANELRDRRDELELTLSKLVSAVASKNEIVQDNRFEQTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 HYNLSIEGFSIVDGVNFHPLKLD---YDDKNKSYSIYYQTPDEKIHDLTAKLKGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDP----------------- 306 L +R + ++ + + L+ ++ LI + Sbjct: 297 LDLRGRDYDKLEGAYDNGILQGYIDSLNTFSKTLITETNNLYAGSAKNSATSDYLEGLTG 356 Query: 307 -IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + I D K + + ++I ++ N + + N Sbjct: 357 DVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMRQIKANTDDNGNKNN 416 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL---EKNRSDSHDLH 422 ++ + DS + + +F A V+L + N G Sbjct: 417 QDDVDDFINASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSGKDASDI 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + + + S ++ GV+ +++ +I+++ Sbjct: 477 RVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQ 510 Score = 89.7 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 4/257 (1%) Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 G R I + + N + + +IKA D+ Sbjct: 355 TGDVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMRQIKANTD--DNG 412 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 Q+ +D+ + +G + ++D S + Sbjct: 413 NKNNQDDVDDFIN--ASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSG 470 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S+ S + + D+ N F G +T+ E Sbjct: 471 KDASDIRVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQYDKVSFYNKDGTIDELTMEE 530 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 Y R G + + +++ +H + ++N + Y + GVN EEL+ LI+ + SY + Sbjct: 531 YYRKFTGKIASDGENNNVIHKSNMTLYNSVYAEYQSKSGVNTNEELAALIQWQSSYGAAA 590 Query: 463 KLIMFTDKMLQTLLEGV 479 K++ D+ML TLL Sbjct: 591 KIVSTVDQMLDTLLGLK 607 >gi|209547530|ref|YP_002279448.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538774|gb|ACI58708.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 430 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 56/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 1 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + + + + N + Sbjct: 61 QTSVRQAISQQGDISYTTSDYDLAISGDGFFIVQSADGTPVLTRAGDFSVDSDGNLVNGA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + + + L+ V Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAVASTSAYFSGNLNSEATVVTDTTT 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ A Q+ L+ S + V S G T + + Sbjct: 181 LPSANTSAVTDDTQKMSLVAYDSLGGTVQYDYYFTKTSVTTDSAGAVTGSTWEVAV-YRN 239 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ T + S P D V V++ A + A I D V L Sbjct: 240 ADATTGGTTSFPYSSDAVSVATLSFDADGQLTSAADTDIVDPVTAQTITMDYSDFTQLAS 299 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 FS Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + K P+A + + L + N +S Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGQSGVT 369 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429 Query: 480 K 480 + Sbjct: 430 R 430 >gi|149191153|ref|ZP_01869411.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148834991|gb|EDL51970.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 408 Score = 117 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 67/474 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + N ++ + +I NI N + T + Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAGGVEVVG---VSQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G R L + +D + + + S L Sbjct: 59 NFEKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAALQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D L + V + A + Sbjct: 119 YSVDGNN-------------------------------NLLLGSVGTVQISTASLQARET 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D+ +F+ D Q + S N+ T +++++ + Sbjct: 148 DSIEFVANLDAREQVPAAAFDYSDSSTYNHSYT------TPVYDSLGNPHTVSQYFVKGA 201 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +++ N + + + VP G + S Sbjct: 202 SNDWNVHVLVDGQAINAADALVPAGS-------------------------PTTTDSANF 236 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + G + + ++ + Q+ S+ ++ + + Sbjct: 237 TFNADGTIASGGNYSVSFDPANGANGVTVNIDLSSVTQFGSDFVVSKNSPNGYTSGDYAS 296 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L++ + WL+ S + L Sbjct: 297 VRMENDGRIFATYTNGQSQLQGQVVLADFAAPQNLIK--TSDTAWLQSFSSGTPVLGTAG 354 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 VF ++ V+L EL L+ +++Y + K I +D++ Q L V Sbjct: 355 SGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANTKSISTSDQLTQALFNVV 408 >gi|330975982|gb|EGH76048.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 686 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 133/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ +TT S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R D L + ++ + + + + ++ ++ Sbjct: 62 SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLL--SDSATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + +++ + + L Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R ++K++E++G+ + N N + + + + Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ S + + ++ S + G I LL+ R+ V+ N+L Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T N + Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 34/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + + +S + + T Sbjct: 378 RRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGAAGISVALTDAK 437 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 SN N S + A L+ + + Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSNIYDSTQTADLRNALKSSTPMKLVMGAAN 497 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + S++ + G + G + I + S +F Sbjct: 498 SSGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410 + ++ + ++ + +L +++ Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVAGLQTAKTVGVINGGVGTSLSGAYASTVSV 617 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + V + S + GV+L EE S LIK +Q Y S+++I Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677 Query: 471 MLQTLLEGV 479 + TL+ + Sbjct: 678 IFSTLINSL 686 >gi|330830297|ref|YP_004393249.1| flagellar hook-associated protein FlgK [Aeromonas veronii B565] gi|328805433|gb|AEB50632.1| Flagellar hook-associated protein FlgK [Aeromonas veronii B565] Length = 667 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 126/384 (32%), Gaps = 7/384 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENKN 61 + + + + NI N +++ YVR T+ + + + + Sbjct: 3 SDLLGIGSSGVLAQQRLLQTTSNNIVNVNSQGYVRERTLVYTNTIGLGTGDIKTQRVIND 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +S L +E L + S +NS I+ S S +++ +E Sbjct: 63 YMQGEVRRDTS--AYHASLTHYEQLAGVDSLLGDTSNSVGAAITSYFKSFHSANESPAEI 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 K V+ +V F+T + ++ K + IE E + L+ + +N AI Sbjct: 121 GGRKVVMTELSGMVNRFHTLSAQLDKQSDTLNTRIEDETKQVNSLLTSINDLNQAIIRTQ 180 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S + DQRD ++++SE + I T+ + N M+V S G +L Sbjct: 181 GSPEENLMLFDQRDEAIRQLSEKMDIRTVAQPNGSMLVNMSTGHSLILDGGVAQFKVIAG 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + + + + + G + L + R + + + +L ++A + + Sbjct: 241 DPDSRDQELQLTLGDNQATIDHDTF--GGAMGGLFKAR-TDLEPTKRELGQLAVAMADAM 297 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 ++++ + + +N G I + + + Sbjct: 298 NQQNRLGMDLDNEIGGDIFTLPTSKGLPYGNNTGTVGANVSFVPGKGTSVTPFDYEVRFS 357 Query: 362 LWNVKNLAGYPDLINHYCDSFNKN 385 + N + Sbjct: 358 SATGYEVFSLDKSGNRTSVATGTT 381 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 5/230 (2%) Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 +G G G + + Q+ ++ + D Sbjct: 441 TNNGGGADIKLGGVFNTGAGSG---FGTNSLSPTAPQVVKIDANGNYQVFQADGTTLIGT 497 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + + + N G + S + L N Sbjct: 498 APASSKGQNLMSAIVNPFPAGAAVYANPKQAPGYEFSITGTVNANDSFKLSYNSNGFADN 557 Query: 373 DLINHYCDSFNKNFIFDPVAGINTN--VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + NK+ + G TN +T + + + N S + L ++ Sbjct: 558 SNGLVLAELQNKDLVRKSTNGGTTNDKMTFNQAYSGLVMEVGNNTSQAKTLLKANESKLI 617 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + GVNL+EE + LI+ +QSY S +++ + TLL V+ Sbjct: 618 QSTGIFESVSGVNLEEEAANLIRFQQSYAASAQIVSTAKTIFDTLLSSVR 667 >gi|157736472|ref|YP_001489155.1| flagellar hook-associated protein FlgK [Arcobacter butzleri RM4018] gi|157698326|gb|ABV66486.1| flagellar hook-associated protein FlgK [Arcobacter butzleri RM4018] Length = 636 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 60/453 (13%), Positives = 123/453 (27%), Gaps = 30/453 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52 MSL FN AQ + + ++ NI N D Y +R T + + V V Sbjct: 1 MSLFGTFNVAQTGLSASRYGIETVSNNIANKDTDGYKKRVTDLSEIGQMGSSITGRGVNV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + L + E + A + + I+ ++E Sbjct: 61 DGVSRVTSQYLYDNYTKEYTKTSYYDKLTNMLGNIEKVFA-ETDTAGLSVDINNYFTAVE 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + I + + +V N V++ ++ E++ + + L E+ Sbjct: 120 QLRSNPNSQIYKSYLQSQGQALVDNLQRLYSSVEQQQSIEKVELKTNVKEVNSILKEIAD 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N + + +D LD+RD L K+S+ + + N ++ + Sbjct: 180 INGKL---ENYTNSTNDLLDKRDALELKLSQYVNVDINRDNGYEIKI------------- 223 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++S T+ E + D V + +L D + D Sbjct: 224 --GGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAAYDANDV 281 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + L ++ + D + + + ++ N Sbjct: 282 IKYTL---NNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRALAFKINNDPKL 338 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + +N + D DS + AG T Sbjct: 339 SQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKANEFTGTISIVRYDATNA 398 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 ++ + VNL Sbjct: 399 VQEREALYKNESQSTTAESDVVLKILEQNVNLS 431 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/434 (9%), Positives = 120/434 (27%), Gaps = 15/434 (3%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + + + + ++ L Q ++ ++ + + + Sbjct: 216 DNGYEIKIGGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAA 275 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 D ++ N + + + N ++ + + D + Sbjct: 276 YDANDVIKYTLNNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVT--MDNLTRALAFKIN 333 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 V K + N + Sbjct: 334 NDPKLSQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKANEFTGTISIVRY 393 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 R+ ++ + T + I V+ + GS + + + + + Sbjct: 394 DATNAVQEREALYKNESQSTTAESDVVLKILEQNVNLSSGSIKAQVENLSSSSPNNK-IQ 452 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + LD +A + + + ++ + + + + Sbjct: 453 SYLDNLDSLAATFSDIYDQYIQVG----------KSEYVYGQNAANDYNGTPKGEIVSVG 502 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + ++ + Y I D D A +L E+ Sbjct: 503 LFSGTSVKTLAFNKNAVNDLKQEQIEYLATIQWKTDLSFDGKGQDSTA--TNTTSLSEFF 560 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 RN+ + + ++ + I +Y+N V V+ +E+ L+K++ +Y+ + ++ Sbjct: 561 RNTKVNVSSDTENAKYSKEVQANIAQTIGTTYNNIVKVDEDDEMVNLMKLQAAYSANAQM 620 Query: 465 IMFTDKMLQTLLEG 478 I D+M++ +L Sbjct: 621 ITAVDEMIKVILGL 634 >gi|15964432|ref|NP_384785.1| flagellar hook protein FlgE [Sinorhizobium meliloti 1021] gi|307311574|ref|ZP_07591215.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] gi|20141447|sp|Q9X5Y0|FLGE_RHIME RecName: Full=Flagellar hook protein flgE gi|15073609|emb|CAC45251.1| Flagellar hook protein [Sinorhizobium meliloti 1021] gi|306899591|gb|EFN30220.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] Length = 406 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 45/480 (9%), Positives = 106/480 (22%), Gaps = 74/480 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N S + +++ NI NA+ Y R T + + Sbjct: 1 MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSY----- 55 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +S Q + S + + + Sbjct: 56 ----------NSGGVQTEVRYSISQQGATTFTTSASDLAIDGG------GFFIVEGANGQ 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + + N S + +A + + ++ + I Sbjct: 100 EYLTRAGSFVPDSEGNLVNASGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIAAG 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + Sbjct: 160 STKGSMGANLP----------------------------------------------SGA 173 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 V++ S ++ + G L+I D Sbjct: 174 PVGDVSTTSLVVYDSQGNTRILDFNYEKTGANAWTLEIVDRASGDALTVPPVTLAFNAAG 233 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 P + + + I+ Q + + Sbjct: 234 ELTTSPATVVANGALIV-----PPPATGAVVGSITIDFSKTTQLGYAFNADGGSIDGNAP 288 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +A + + L + N S Sbjct: 289 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLRPESGNVYSQ--GVDSGVII 346 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I + V++ EEL+ +I+ +++Y ++K+ ++L+ L+ + Sbjct: 347 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 406 >gi|23092321|gb|AAN08646.1| FlgK [Aeromonas hydrophila] Length = 664 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 48/367 (13%), Positives = 118/367 (32%), Gaps = 7/367 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSENKN 61 + + + + NI N +++ YVR T+ + Sbjct: 3 SDLLGIGTSGVMAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNSVGLGTGDMLTERVINA 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +S +E L + +NS I+ + + ++ ++ Sbjct: 63 YAQGEVRRDTS--AYFASATRYEQLSNTDTLLGDTSNSVGAAITSYFKAFHTANEAPADI 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 KT + +V F+T + ++ K + I E + ++ + +N AI Sbjct: 121 AGRKTTLSELSGMVNRFHTLSAQLDKQTDTINTTIGDETKRVNGLINSINDLNQAIIRTQ 180 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 S + DQRD ++++SE + I T+ + N M++ S G +L Sbjct: 181 GSPEENLMLFDQRDEAIRQLSEKMEIRTVPQANGSMLINMSTGHSLVLNGGVAQFSVVPG 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + + + ++ + G + L R+ + + +L ++A + + Sbjct: 241 --NPDSRESELQLTAGTNKTSINESTIGGGMGGLFSARND-LEPAKRELGQLAAAMADAM 297 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 ++++ + + +N G + Q S + + Sbjct: 298 NQQNRLGMDLDNELGGDLFSLGVSDGLPYDQNTGTGAAKVNFVPGKGSEVTTFDYEVQFS 357 Query: 362 LWNVKNL 368 + Sbjct: 358 GATGYEV 364 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 19/199 (9%), Positives = 50/199 (25%) Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 +++ P + ++ Sbjct: 456 NTSTGSGFGTNTLDPTAPQVVKVDNSGNYEVYAADGTTLIGVAPASSKGQNLMAAIESPL 515 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + +P Y + + L + + Sbjct: 516 GGPKVYANPTQSPGYEFSITGTVQPKDSFTLSYNQDGFADNANGLALAELQNKDLVRKST 575 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 N +T E + + N S + L ++ + + + GV+L+++ + Sbjct: 576 NTGTSNDKMTFNEAYSGLVTGVGNNTSQAKTLLQANEAKLTQSTNIFESVSGVSLEKKAA 635 Query: 450 FLIKVEQSYNISNKLIMFT 468 LI+ +QSY S +++ Sbjct: 636 NLIRYQQSYAASAQVVSTA 654 >gi|85712254|ref|ZP_01043305.1| flagellar hook protein [Idiomarina baltica OS145] gi|85693881|gb|EAQ31828.1| flagellar hook protein [Idiomarina baltica OS145] Length = 466 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 58/483 (12%), Positives = 122/483 (25%), Gaps = 29/483 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 FN A + ++A + N+ N + + Sbjct: 2 SFNIALSGISSAQKDLDVTANNVANVRTTGFKGSRAEFADVFANNIFSGSDQQTGNGSAT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 S + L+ +++ F A ++ D + + +SY Sbjct: 62 ASVAQQFSQGTLNFTQNSLDMAISGNGFFATTSGIAQQDFT----YTRAGAFKLNDDSYI 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L +D+A Q+ + +A +I A E L Sbjct: 118 VNNQGRFLHGFPVDSASGATQSTSLAASGPIRIPDSAGAPSATENQYQSFNLDARAP--- 174 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 D + + D S I + ++ M Y ++ Sbjct: 175 --------GIDVSNGFNPEDPTSYTSSTSTTIYDSLGESHVMTTYYVKRNAADVGGQENV 226 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++NP G + + + G + R Sbjct: 227 WDVYNTVDGQMVDTNP--SQGYTGAPSYEPSPGDGVDNTVSSQRIVFDQSGSPVGVPNPG 284 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 P + + NV + Q+ S+ S Sbjct: 285 GYNLDSDTFPPASISLANVLSNGADTSQNVQIFYRDRLDQGGDTAPTQFASDFSVNLLEQ 344 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++A + Y + + + L + W E Sbjct: 345 DGTTVGRLTNIDIAEDGLISASYSNGDVQYLGKVALVRFANEQGLTQLGDA--SWSESQS 402 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + VF I S V+L +EL LI ++++ +++ + + + Q + Sbjct: 403 SGIATSGEANSGVFGTIEASALENSNVDLTKELVDLISAQRNFQANSRSLEINNSLQQNI 462 Query: 476 LEG 478 L+ Sbjct: 463 LQI 465 >gi|114777912|ref|ZP_01452826.1| probable flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1] gi|114551699|gb|EAU54251.1| probable flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1] Length = 575 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 136/452 (30%), Gaps = 21/452 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + N A + + + NI NA+ Y R+ V V Sbjct: 2 IFDSLNIAASSLQTQQKSINVVSHNIANANTAGYSRQVADIATLTPESVGGLSLGRGVNV 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 M + L + S + + + N + S + Sbjct: 62 TGISRIVDPMINSALSNNGSQMNYWTTQNTGLNSVANVFG-SLQNTGLASALDNFFLSWQ 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + V E ++ N + ++++ ++ AD +I+ +I + + + Sbjct: 121 QLANNPQDSAQQFNVRTKGETLITNLGSMSQQLSAAQSSADGQIDSQIQQANKLIDTIAA 180 Query: 173 VNDAIKFKT----ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ I+ + +S A+D DQRD ++ ++ ++ + I NN +++ T+ G L Sbjct: 181 LSTQIRKQENALSSSAGTANDLRDQRDQAVRSLANLLPVQQISDNNGGLLLQTASGDLLT 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T+ + + + G I L+ +RD+ + + + Sbjct: 241 QDGVARHLA------RGTAIGGGFAGLVIAQTGQAVNIGQSGSIGGLIDLRDNKLGGYMS 294 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q++ +A L S ++ A ++ + S S Sbjct: 295 QINSLAANLAFSVNQIHASAASATTDTTMTAGQPSNVALALNDPAQSAAFANQIVSGSFK 354 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + N+ + S N + + + +S Sbjct: 355 IHVYNATGTATPAGGTAINITAGTTTMADVITSLNAVTGISASMDAGSRLNITAATGSSF 414 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + S + + +T Sbjct: 415 ALSNDTSNTLAAYEVNSYFTGSSAATLNLSTS 446 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 111/410 (27%) Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 S +L+ + AL + ++ +S + LRD + ++L+ + + + DN Sbjct: 166 SQIQQANKLIDTIAALSTQIRKQENALSSSAGTANDLRDQRDQAVRSLANLLPVQQISDN 225 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 ++ + Q A + T I + Sbjct: 226 NGGLLLQTASGDLLTQDGVARHLARGTAIGGGFAGLVIAQTGQAVNIGQSGSIGGLIDLR 285 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 ++ + +I+ + N ++ T +N ++ Sbjct: 286 DNKLGGYMSQINSLAANLAFSVNQIHASAASATTDTTMTAGQPSNVALALNDPAQSAAFA 345 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + G + + + + + V S S N Sbjct: 346 NQIVSGSFKIHVYNATGTATPAGGTAINITAGTTTMADVITSLNAVTGISASMDAGSRLN 405 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 G A + ++ + N S + + Sbjct: 406 ITAATGSSFALSNDTSNTLAAYEVNSYFTGSSAATLNLSTSIQASPAAIHTGRVDPLTST 465 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 N + + + + +L + + S + Sbjct: 466 ISSSDNSAAIAIMQLQNQAVSFDGSLSSSLHNRTTAVSTQYGNDVATSLQQRQYRTAEAD 525 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ GVN EEL +IK +++Y S K+I T++M+ +LL ++ Sbjct: 526 SLNAQRQAISGVNTDEELVSMIKFQRAYEASAKIITTTNQMMDSLLGLIR 575 >gi|52841451|ref|YP_095250.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628562|gb|AAU27303.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 437 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 51/482 (10%), Positives = 124/482 (25%), Gaps = 58/482 (12%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQR 56 FN A + +++ I NI N+ + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGSNAVGGGVKLS 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +++ L ++ + F L + + + + E+Y Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + L + D+ + ++ +++ A+ +S S+ N Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANITPRASSNVSVGVNLNSQSKAPNV- 170 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + N +Y S G + ++ Sbjct: 171 ----------------------DWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + S + V+ + + A QN + Sbjct: 209 DSTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 S ++ +P I + ++ + + Q+ S + + Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + + +A +L W E S Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTAS 374 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + I+ V+L EL LI ++++ + + I D + QT++ Sbjct: 375 GQPLISAPGSGGLGLINSGRLEESNVDLTGELVKLINAQRNFQANAQTIRTGDAITQTII 434 Query: 477 EG 478 Sbjct: 435 NI 436 >gi|254516989|ref|ZP_05129047.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] gi|219674494|gb|EED30862.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] Length = 429 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 41/483 (8%), Positives = 104/483 (21%), Gaps = 66/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F+ A + N A+ I NI N+ + V+ Sbjct: 2 AFSTAISGINAATADLGVISNNIANSSTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++++ F L + E + Sbjct: 62 AGVTQEFGQGNITFTNNSLDLAINGNGFFQL-------SVEGAIEYTRAGNFQVDREGFL 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + L +D +V +I+ + + S N Sbjct: 115 VSNQNSRLQGFQVDAGGDVTGQLGDI-------------QIDTSLIDPNATASVSLTSNL 161 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + E Sbjct: 162 DSREVSPGTG----------------------------------FGGAAAPFTEYDAFAA 187 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + ++ D + K + + + QN + Sbjct: 188 TPTSPSPADFNATTSTTIYDSLGNPHVLSLYYVKTANANEWNVFSLIDGVSQNAGAPVTL 247 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + + Q+ + + Sbjct: 248 NFASNGQFTAASLTDIPIAGWDPLNTDGSSTGALSPASFNVDLAQTTQFGTAFAVSSVVQ 307 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + Y + ++ +A N L W+E Sbjct: 308 DGFSAGQLRGLEIDESGVAFARYTNGESRALGQIALASFNNQNGLQPVGD--TNWVETFS 365 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S S ++ + + V + +EL LI ++++ + ++I D + QT+ Sbjct: 366 SGSPNVGEPGTSGLGVVQSAALEDSNVEITQELVDLIVAQRNFQANAQVIQAEDAITQTV 425 Query: 476 LEG 478 + Sbjct: 426 INL 428 >gi|77165838|ref|YP_344363.1| hypothetical protein Noc_2375 [Nitrosococcus oceani ATCC 19707] gi|254433154|ref|ZP_05046662.1| conserved domain protein [Nitrosococcus oceani AFC27] gi|76884152|gb|ABA58833.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207089487|gb|EDZ66758.1| conserved domain protein [Nitrosococcus oceani AFC27] Length = 425 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 54/483 (11%), Positives = 119/483 (24%), Gaps = 70/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------ 59 FN + + N AS NI NA + R + ++ Sbjct: 2 AFNTSLSGLNAASSDLDITANNIANASTTGFKRSRGEFADIFAVSSFGRSQTAVGSGVLL 61 Query: 60 ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L +++ + AL +++DD E Y Sbjct: 62 NKTAQQFEQGNLDFTQNSLDLAISGRGLFALSPSLNSDDL----VYSRAGAFSVDKEGYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + +++ ++ + + ++S S+ ++ Sbjct: 118 VNSSGQYLRTFPTNANGTATAASLSNSHPLRLPTSAGTPQATSQVSIGANLPSDAAALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 LD D S + + N++ +Y T Sbjct: 178 -------------ASLDLLDASTYTASTSETVYDSLGNSHISTLYFLKDTNGINQWAVYH 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + I ++ + + Sbjct: 225 SLDGTLANINGGTAGAGGIQYGTLNFDATGILTG-------------------------- 258 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 S P + + + N + + Q S + Sbjct: 259 ---------------SVPDPLITDPLALNNGANDIAMRLDFAANNTTQVASPFNVAVLNQ 303 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 +++ + +Y + N +A L + N W E Sbjct: 304 DGFTSGRLTGLDISNTGIIQANYSNGQNSTLGKIALAQFPNEQGLRQLGNN--AWAETVS 361 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I + V+L EL LI ++++ + K I + T+ Sbjct: 362 SGTALAGEAGVGSFGLIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTVTDTI 421 Query: 476 LEG 478 + Sbjct: 422 INI 424 >gi|327480020|gb|AEA83330.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 59/558 (10%), Positives = 129/558 (23%), Gaps = 87/558 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55 FN + AS+ NI NA + + + + T Sbjct: 2 SFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVLM 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------------ 103 + ++ ++ +A+ F + + Sbjct: 62 SNISQQFNQGNINYTQNALDLAINGNGFFQVSNNGAVSYTRAGYFGTDREGFLVDNFGYK 121 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + +N L + A + NT+ ++A A + + Sbjct: 122 LQGFPVDNNGNLQNGVVGNLQVQTTNQAPKATSQINTAFNLNSTLKAPATWQASYDGVID 181 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT-- 221 + + T + + A +A D L S + IV + D+ T Sbjct: 182 KVYRDNFTTESALVPLLPAGGTNAARGQAYMDALASSPSLTVYDQAIVDHMGDITSSTVE 241 Query: 222 --------------------------SDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 +DG L + F + T S ++ D Sbjct: 242 EVGQKLAGAIAAAELAAVEIAKAASGADGVKLLALRTANATFNPADPTTYNSSTSLNIYD 301 Query: 256 GVVVSSNQG----------------------SAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + G + + ++ +L M Sbjct: 302 SQGNAHVMTQYFVKTAPNTWTMNVLVDGVRPNFDSDGAQYSKVPFAYNLSFDANGKLSAM 361 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-------------NKLCQGISETICV 340 + G+ + +G + + Sbjct: 362 TAADVVVGGNPVSTPTALGGALGVIAFAPGDWVPVSVDASGAATPNRADNPKGFTFDMRN 421 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 QY S + + + Y + +K +A L Sbjct: 422 ATQYASAFAVNSVAQDGYTTGELAGLEIDDTGVIFARYTNGQSKVQGQIILANFANVQGL 481 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + W++ S + + V L ++L LI +++Y Sbjct: 482 TPVGK--TQWVQSFESGEPVVGTPGSGTLGALQAGALEDSNVELSDQLVNLIVAQRNYQA 539 Query: 461 SNKLIMFTDKMLQTLLEG 478 + K I + QT++ Sbjct: 540 NAKTIETESAITQTIINL 557 >gi|154252984|ref|YP_001413808.1| hypothetical protein Plav_2542 [Parvibaculum lavamentivorans DS-1] gi|154156934|gb|ABS64151.1| protein of unknown function DUF1078 domain protein [Parvibaculum lavamentivorans DS-1] Length = 454 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 55/491 (11%), Positives = 115/491 (23%), Gaps = 48/491 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS A S I NI N+ + R DT T V Sbjct: 1 MSFFGSMTTAITGIRAQSSALGHISDNIANSQTIGFKRTDTNFQDIVTASTSRNHLPGAV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFE----ALKEMMSADDHYNNSPTHYISKLRD 109 N + A F + + N + Sbjct: 61 LAAPSFTNNVQGSIDASEVPTHMAINGSGFFVVSARVATVDGNPVFDNVNYYTRRGDFSM 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N L ID + V + + + +S Sbjct: 121 DKYGYLVNGGGYTLQGLAIDPV---------TGNPVGDTPSRIQINRDFLAARTTSTISY 171 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + K A A+ L ++++ IS + + T ++ Sbjct: 172 KANLPAWPKTVNADPAIANSELLTVGRFTPALADLSVISAANEDIFLDNSLSGGAVTGYD 231 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + N + + + + +S+ + D V + Q+ Sbjct: 232 ELGAPANVQFRWAKIDNEDGGGDTWNLFYKTSDSATGAT-----------DKWVNVGQDY 280 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + L + V L N + + Sbjct: 281 AFDGQGRLTPAVDSTTITGLTVNGVS----------LGNVTLDHGASNVTQFEDDNGTVK 330 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ + Y + + +A N + L + Sbjct: 331 TTELDQNGYPSGELVSIAVSENGRITGTYSNGKTVDLAQVSLATFNASDKLKKL------ 384 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + I S V++ +E S LI +Q+Y +++ D Sbjct: 385 -DGTAFAATQESGEPMLGGGGDIIASAREASNVDIADEFSKLIVTQQAYTAGTRIVTTAD 443 Query: 470 KMLQTLLEGVK 480 ++++ L + Sbjct: 444 ELIRETLNMKR 454 >gi|330972413|gb|EGH72479.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 101/478 (21%), Gaps = 43/478 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSN 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D VV + Sbjct: 122 MKLQGYNVDANGAVVTGALS------------------------------------DLRV 145 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 AS + + + + + T ++T ++ Sbjct: 146 NASNLEPKATTTITNSANLNSTTALPTVATFDATDTNSYNVKYSTPTYDTQGNAHTLDQY 205 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T T+ + + S+ S P + V + + A + + Sbjct: 206 FVKTGTNTWSMYSLMDGRSISDPTSTAPDKNDLTFDSSGNLVTTAGGSVPTDSANIKFNA 265 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G I + Q S L+ + Sbjct: 266 DGTFAVSNWVPGVQVGTGTTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYAT 325 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + N+ +L Y + ++ + L + W E S Sbjct: 326 GQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPV 383 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441 >gi|300114799|ref|YP_003761374.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] gi|299540736|gb|ADJ29053.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] Length = 425 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 118/483 (24%), Gaps = 70/483 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------ 59 FN + + N AS NI NA + R + + ++ Sbjct: 2 AFNTSLSGLNAASSDLDVTAHNIANASTTGFKRSRSEFADIFAVSSFGRSQTAVGSGVLL 61 Query: 60 ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L +++ Q AL ++ D E Y Sbjct: 62 NKTAQQFEQGNLDFTQNSLDLAISGQGLFALSPSLNDKDL----VYSRAGAFSVDKEGYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + +++ ++ + + IS S+ ++ Sbjct: 118 VNSSGQYLRTFPTNENGTATAASLNNSQPLRLPTSAGTPQATSRISIGANLPSDTAALDP 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 LD D S + + N++ +Y T Sbjct: 178 V-------------NLDLLDTSTYTASTSETVYDSLGNSHISTLYFLKDTNGTNQWAVYH 224 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + ++ + A+ Sbjct: 225 SLDGTLANINGGTAGAGGVQYGTLNFDATGALTG-------------------------- 258 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 S P + + + N + + Q S + Sbjct: 259 ---------------STPDPLATDSIALNNGANDIALTLDFAANNTTQVASPFNVAALNQ 303 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 +++ + +Y + N +A L + N W E Sbjct: 304 DGFTSGRLTGLDISKTGVIQANYSNGQNSTLGKVALAQFPNEQGLRQLGNN--AWGETVS 361 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S S F I + V+L EL LI ++++ + K I + T+ Sbjct: 362 SGSALAGEAGVGSFGTIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTITDTI 421 Query: 476 LEG 478 + Sbjct: 422 INI 424 >gi|54294163|ref|YP_126578.1| flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|53753995|emb|CAH15466.1| Flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|307609977|emb|CBW99506.1| flagellar hook protein FlgE [Legionella pneumophila 130b] Length = 437 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 49/482 (10%), Positives = 121/482 (25%), Gaps = 58/482 (12%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56 FN A + +++ I NI N+ + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +++ L ++ + F L + + + + E+Y Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + L + D+ + I A + + ++ Sbjct: 116 NANNQRLTGLLTDSNGAITGASGDLRINTANITPRASSNVSVGVNM-------------- 161 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + N +Y S G + ++ Sbjct: 162 -------------NSQSKAPNVDWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + S + V+ + + A QN + Sbjct: 209 DPTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 S ++ +P I + ++ + + Q+ S + + Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + + +A +L W E S Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTSS 374 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + I+ V+L EL LI ++++ + + I D + QT++ Sbjct: 375 GQPLVSAPGSGGLGLINSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTII 434 Query: 477 EG 478 Sbjct: 435 NI 436 >gi|251772436|gb|EES53003.1| probable flagellar hook protein FlgE [Leptospirillum ferrodiazotrophum] Length = 458 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 65/490 (13%), Positives = 133/490 (27%), Gaps = 50/490 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------ 54 M +L+ A + + + I NI N + + + Sbjct: 1 MGILSSMYVANSGLSAMGTDMSVIGNNISNMNTNGFKAGRAVFANIYGQTLAGKSNAVGP 60 Query: 55 --------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 S + S+A+ F + + A Sbjct: 61 SQPGSGVYVESIEPLFTQGSVQTTSNALDLAIQGNGFFSFRNRQGAI------LYGRNGA 114 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 L + IL + D +++ + I A + + I+ Sbjct: 115 LSLDRNGRIVDQGGHILQGYMADARGKILPKVRDLSVPQSTIPPKASQNVYSRIN----- 169 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 ++ + K + + D L + + V T DG T Sbjct: 170 ------LDANMTEKLKTGKTFSKSSNIFDSLGIEHLLTYKFHPTNQVGVWAVEATLDGAT 223 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + SYT S P+ I G+V S + Sbjct: 224 LTKGGGS-------ISYTPASGGKPMTIKGMVASVAFDGNGNVETVNYGGSPVSQSSDGV 276 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 QN + MA + LFI + + + G ++ + QY Sbjct: 277 QNVVYTMAL----------ADKAKTPVNLSLFIPKAGQKVADNSKDGTTQQVLDLTQYAE 326 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + + K + + ++ + + N V+ N L+ N Sbjct: 327 PSTTIEETQDGYKAGDLSNIAIDRAGRIVGSFSNGTEHNLGAIAVSTFNNPNGLVSVGAN 386 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + E S ++ Q + + V+L ++ +I E+ Y + +I Sbjct: 387 L--YKESIGSGIANIGRAGQGGRGQVLANSLEQSNVDLGRQMIDMISAERGYQANASVIS 444 Query: 467 FTDKMLQTLL 476 ++++ TLL Sbjct: 445 ADNQLMNTLL 454 >gi|312882659|ref|ZP_07742396.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369620|gb|EFP97135.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] Length = 435 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 42/481 (8%), Positives = 116/481 (24%), Gaps = 60/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N V Sbjct: 4 YISLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSIFTHAKTTPGQGVQASK 63 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + ++Y Sbjct: 64 VAQQFHEGSSIYTNNPMDLRINGTGFFAVAKDRLTPTTNE---LTRNGAFHLNKDNYMVT 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ S+ + I + + + Sbjct: 121 SNDEFLLGYQVNKDTGDVLSYEPSS---------------IMIPKEFGKPKQTANIEVGV 165 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D D S I + + M Y T T Sbjct: 166 NLPANAPLRDPALFDYTDPETYNRSTSSTIYDSMGQSYKMTTYYLKDQTQPNTWQTYYTV 225 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + +L Sbjct: 226 TDTDGEKPINIVGGDATSPTGQTGHTMKFNNDGTLASL---------------------- 263 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + P A+ + Q +S + Q+ + + Sbjct: 264 --------NSGQDIVSEPLGAGANPVNLNGADPTQTLSFGLDSATQFAAPFELTKFDEDG 315 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 316 ATTGFLTKVDFDENGSVLGTYSNGENVILGRVAMVRVANEQGLDK--KGGTQWDATQFSG 373 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I +++ +EL LI+ ++++ +++ + + Q +L+ Sbjct: 374 DKIWGESNKGSFGTIRSGTLEQANIDMTQELVDLIQAQRNFQANSRALEVHNTTQQNILQ 433 Query: 478 G 478 Sbjct: 434 I 434 >gi|300693344|ref|YP_003749317.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum PSI07] gi|299075381|emb|CBJ34676.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum PSI07] Length = 642 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 58/407 (14%), Positives = 132/407 (32%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIGATGLRVADINLQVTGNNIANASTPGYSRQEAVQTENTPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + ++ L S + + +D N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQASTSAADQLNSLVSGLDSYLSD--SNSGLGSALTGFFNAADS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN A ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAVAGQMNSLSTQVNTQVQTQVNSVNSTAQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + + +Y +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKTSVVQTGDGQYNIYVGNGQALVQGN 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S V+ + S + G + L+Q R + + QN L Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSAAGPSVAASSSNTGTGSLTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 YDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGAMNSG 406 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/457 (7%), Positives = 104/457 (22%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKTSVVQTGDGQYNIYVGNGQALVQGNQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVTIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + + Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSAAGPSVAASSSNTGTGSLTATITNANAGQGYDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T + Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGAMNSGDSFLVRPTANAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + + + + + + + S + + L Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGSPLASAINLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GNVTVTVNGTSTTYSGTAPYTQGATYSFNGIQMSLTGTPASNDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + +L N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDGGTTSLGSAWTNLVTQVGIQASQASANLTSQKALLASSTSQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y S K++ + + +LL Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639 >gi|114762177|ref|ZP_01441645.1| flagellar hook protein FlgE, putative [Pelagibaca bermudensis HTCC2601] gi|114545201|gb|EAU48204.1| flagellar hook protein FlgE, putative [Roseovarius sp. HTCC2601] Length = 432 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/489 (10%), Positives = 127/489 (25%), Gaps = 66/489 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ + N + + + ++I NI N+ Y R +T T + + Sbjct: 1 MTISSSLNAGVSGLAGNASRLSAISDNIANSSTYGYRRVETDFTALVMSSGSQRAYTAGG 60 Query: 61 NMFDKVL--------HAHSSAIGQQRLLQSFEAL-KEMMSADDHYNNSPTHYISKLRDSL 111 D + + S+A + + R Sbjct: 61 TAIDNLRLIDEGGAIVSTSNATDLAVDGIGMLPVASQAQYEATGEPELLLTSTGSFRIDE 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 Y + + L + + ++ ++ + + Sbjct: 121 NGYLASENGYYLMGWPAALDGSIPPYPRDTINGLEPVKFSLSLTGDPTTAVDMAL----- 175 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + A+ + ++ D + S I + V Sbjct: 176 NLPATETQAGAAGDAEYLEIEYFDNVGISQSISITFTPT--------------------V 215 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + S + I ++ + + G + + ++ + Sbjct: 216 PATGISNEWSMVMTDSAQDGAVIGDYTITFDATT----GAGGTIATVVETTGGAYNAGTG 271 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G E D A + +K + + V S L Sbjct: 272 LFTVDVAGGPIEFDIGATGTTGGLSQLGDSFAPISISKDGSSVGNMVSVEVDENGYVSAL 331 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D G + + +L Y +I +F + + + L + G + Sbjct: 332 YDSGQSQVLYQIPLVDLPNYNGMIAVDGSTFRPSP-------ESGSFFLWDAGDGPTGSV 384 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + ++ +EL+ +I+ +++Y+ + K+I D+M Sbjct: 385 KSYARQ---------------------ESATDIAQELTDMIRTQRAYSSNAKVIQTVDEM 423 Query: 472 LQTLLEGVK 480 LQ + Sbjct: 424 LQETTNMKR 432 >gi|296122953|ref|YP_003630731.1| flagellar hook-associated protein FlgK [Planctomyces limnophilus DSM 3776] gi|296015293|gb|ADG68532.1| flagellar hook-associated protein FlgK [Planctomyces limnophilus DSM 3776] Length = 566 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 140/431 (32%), Gaps = 22/431 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MSL A S NI NA+ K +VR T V Sbjct: 1 MSLNGALAVASRSLEIFSASVQVSSNNIANANTKGFVRDAVSLTPAGSYQTGSLLVGSGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V R + + +HA + + + E + + + ++ S Sbjct: 61 LAVGVRQQLDTYLESRIHAANGDAASSTIKSATWQRLEATLG-ELGDEDLSTALNDFVAS 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + + + + +V + + +V +R + ++ ++ R ++++ Sbjct: 120 LQTLTGAPDSAGQRQITLQETQALVSHITSLRGKVDDLRTTLNDQLTSQVDEANRLINQI 179 Query: 171 TVVNDAIKFKTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I A+ DA +R + ++SE+I + I R + + +Y+ + Sbjct: 180 VNLNPKISALEANGLNQSDAGALRVERLNAINRLSELIPVKAIERPSGQVDLYSGSEYII 239 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + T ++ ++ + G+I+ ++ RDS++ F Sbjct: 240 LD------GYTQNLEVTPATDGTFGVLNVQTTITKASVTNGGGEIQGTIESRDSILGGFT 293 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A LI + + + D + L + + Q+ S Sbjct: 294 KQLDQLASGLIYEANRIHSQGEGLTGYSTVTGTYQVADANAALNTSAAG-LNFPVQHGSF 352 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL-EYARN 406 +R+ S +L G + N + A + + L A Sbjct: 353 TIKVRNLTSGETTESKISIDLDGLGTDTTLNDVVASLNAVGQVSAQVTADGQLQINAAAG 412 Query: 407 SIGWLEKNRSD 417 + S Sbjct: 413 YELRFGADSSG 423 >gi|238755324|ref|ZP_04616667.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473] gi|238706460|gb|EEP98834.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473] Length = 427 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 46/476 (9%), Positives = 110/476 (23%), Gaps = 54/476 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F L++ + Sbjct: 62 NDGTPTTTNRRLDLAISQSGFFRLED----------------------------SSGGIS 93 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +E + + A + +N ++ Sbjct: 94 YARNGQFRLDENRNIVSQQGLHLTGYPATGTPPTVQQGANPVPLTIPQGMIAAKATTAGT 153 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + D D N + T F+++ Sbjct: 154 MVVNLNSSHDVIDAAK-----------TFDPNKPDTYSFVNNITTFDSLGNSHVVSMYFV 202 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + D ++ A + + + + Sbjct: 203 KTANNTWDVYSKDTSAKLTDP----------AKPFDPADPAAAAKRGTMNFNNEGVLTGT 252 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + A ++ + D + Q + S + Sbjct: 253 KDTAGAASAAPFTLNIPMGALNGADANVAGFALNMAGAMQQNTGSDSVSAQTQTGYAAGE 312 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + + L N W E S + + Sbjct: 313 FTGFQIEKDGSVVGTYSNQQKQLLGQIVLTNFANPEGLSPQGDNV--WKETGSSGAAIIG 370 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 371 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 426 >gi|313200563|ref|YP_004039221.1| flagellar basal body flae domain-containing protein [Methylovorus sp. MP688] gi|312439879|gb|ADQ83985.1| flagellar basal body FlaE domain protein [Methylovorus sp. MP688] Length = 402 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 59/473 (12%), Positives = 124/473 (26%), Gaps = 73/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I N+ NA+ + + N Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANA--------------- 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G + ++ + + N I+ + S N + Sbjct: 47 ---LNGSGTGSAGIGVKVADIQRQFTQGNITNTENPLDIAINGNGFFRLS-NSGAITYSR 102 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ +S + AD + ++ L+++ + + + + ++K Sbjct: 103 NGQFQLDKAGYIVTSSGERLTGYVADTNGALQTGA------LTDIKISSADLAPQASTKV 156 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + LD R +L S T + VY S G S Sbjct: 157 NDVFNLDSRSAVLPIASFNPADPTTYTQVVPISVYDSQGNPHTLQSYLIKTAANTWSVRT 216 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + + ++ + + +A+ Sbjct: 217 TVDGGTTAVGSSTLTFDTNGLLTGTTTQAVTLA--------------------------- 249 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 Q I+ + Q+ S+ S + Sbjct: 250 -------------------PPTVPASQAITIDFASSTQFGSDYSLNSQVQDGYASGRLSS 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + A +I Y + K +A L N E + + Sbjct: 291 FSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLSALGNNQFA--ETADAGVPVIGKAG 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S + V+L EL +I ++ Y + + I D++LQTL+ Sbjct: 349 TGGLGTLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVNL 401 >gi|186477704|ref|YP_001859174.1| flagellar hook-associated protein FlgK [Burkholderia phymatum STM815] gi|184194163|gb|ACC72128.1| flagellar hook-associated protein FlgK [Burkholderia phymatum STM815] Length = 657 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/410 (12%), Positives = 122/410 (29%), Gaps = 18/410 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 +F+ + N A + +NI N Y + S V+ Sbjct: 3 SNLFSIGLSGLNAAQWGLTTTGQNISNQATPGYSVERPVYAESSGQYTGSGYLGSGVSTT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L+ S G + A M + I+ L++ Sbjct: 63 TVQRQYSQYLTTELNNAQSQSGSLNSYYNLIAQLNNMVGSPTS--GISSAITSYFTGLQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S + ++ I NA+ + N + + ++R + + ++ + + + S++ + Sbjct: 121 VANDASNPAMRQSAISNAQSLADQINAAGDQYDQLRTNVNTQLGDTVKQINTYSSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ +A + LDQRD+ + +S+++G+ + + + V+ +G L Sbjct: 181 NAQIQSLSAQGQPPNQLLDQRDLAVSNLSQLVGVQVV-QGDTGYSVFMGNGQPLVVADKS 239 Query: 234 DINFEKMNSYTVTSESNPI-----FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T + S G+I L+ R + + Sbjct: 240 FNLTTVTSPADPTETAVAYAGLSSLAGTTTPQILPDSTPLGGQIGGLMTFRSQTLDPAEA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + + G + + Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLNGNKGGALFTVGNPTVYANANNTGGATLGATLSNPSQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + N + + I ++G Sbjct: 360 PVSGDYSLAYDGTNYTLTNRDTGQVVGQASSLTSPIGGIQFNLSGTMNAG 409 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/441 (8%), Positives = 108/441 (24%), Gaps = 2/441 (0%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + +V + + L +S ++ L + Sbjct: 215 QVVQGDTGYSVFMGNGQPLVVADKSFNLTTVTSPADPTETAVAYAGLSSLAGTTTPQILP 274 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + L ++ + + Q +A + + Sbjct: 275 DSTPLGGQIGGLMTFRSQTLDPAEAQLGAIATSFAAQVNAQNALGIDLNGNKGGALFTVG 334 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + S+ + D+ D ++ + + ++ Sbjct: 335 NPTVYANANNTGGATLGATLSNPSQPVSGDYSLAYDGTNYTLTNRDTGQVVGQASSLTSP 394 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQ 277 L T+ +F + + DG ++++ V G Sbjct: 395 IGGIQFNLSGTMNAGDSFTVEPTRGALNGFALTTSDGSAIAASSPVLVSTGTANTGTSTV 454 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + +V + + S + Sbjct: 455 TQGTVSSGYTLPSTSTTLTYNSATGSLSGFPVGSTVTIDGTPPTSYNITATTTPVPYNPA 514 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + +A P ++ + + + N Sbjct: 515 TGASMTITGAAINNVSLQITGSPANGDTYTIAPNPAGGKDGRNAQLISNLVTAKSMGNGT 574 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 +TL + N + + + + + I+ + GVN+ EE + L++ +Q Sbjct: 575 LTLTDSYANYVNDIGNQTNQVQTSNKAQSALVTQITTAQQAISGVNINEEAANLLQYQQL 634 Query: 458 YNISNKLIMFTDKMLQTLLEG 478 Y ++K+I + QT+L Sbjct: 635 YQANSKVIQTAQTLFQTILGI 655 >gi|225871951|ref|YP_002753405.1| flagellar hook-associated protein FlgK [Acidobacterium capsulatum ATCC 51196] gi|225791881|gb|ACO31971.1| flagellar hook-associated protein FlgK [Acidobacterium capsulatum ATCC 51196] Length = 472 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 75/495 (15%), Positives = 154/495 (31%), Gaps = 50/495 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 S+ FN A + + N+ NA+ Y R + + V Sbjct: 3 SIGTAFNIATGALEADQAALSIVSNNVANANTTGYTREVPVWQMADSIQINGITYGDGVN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--------SPTHY 103 + +S+ + + L + A S + + + + + Sbjct: 63 MTGPQSQRSPVLQQSLDQQTQAQSDSAARLSALQQVQGVFSSSISTSSSSTSSTVGISQD 122 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +S + + N ++ L + V+ A + +FN++A+++ A D + ++ + Sbjct: 123 LSSFFSAWSALEANPTQTSLRQGVLSAAANLTSDFNSAAQQLSSQAASVDHQSAGLVTQI 182 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 +++ +N I + DA D R + ++S ++G++ I N + + T+ Sbjct: 183 NNLTAQIAKLNTQIS-SQSPNSDAGSLEDARATAISQLSALVGVNQIQNQGNSLTLTTTS 241 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G L + F D G G + LL +RD + Sbjct: 242 GAVLVSGSQSFAL------SSGLVNGVTHFFDSNNNDITAGLTGAGGSLGGLLTVRDQDI 295 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P Q+ LD +A L + + ++ ++ PG I Q Sbjct: 296 PQMQSALDTLAYSLGSAVNTQNEAGSDASGNPGTAIFSLPTSATGAATQI---------- 345 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + +A S I + T Y Sbjct: 346 ---------------SVIMTDPNKVAAAASGDGSQNGSNATAVANLATQQIVSGDTPTNY 390 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + L SD + Q + + GV+L EE + L +EQ+Y ++K Sbjct: 391 YSAFMTSLGSLVSDVQSQNSFQQASVTQLQNQIGSLSGVSLNEEAASLETLEQAYQAASK 450 Query: 464 LIMFTDKMLQTLLEG 478 ++ L Sbjct: 451 TFTVLSNVMTAALNL 465 >gi|293395583|ref|ZP_06639866.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] gi|291421902|gb|EFE95148.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] Length = 411 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 110/476 (23%), Gaps = 70/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V +N Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATAGFKSGSVSFADMFAGSQVGLGVKVAGITQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + A+ F +++ + + N+ Sbjct: 62 NGGTTTSTNRALDVAITENGFFRMQD------SDGGIFYSRNGQFKLDENRNLVNMQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ I + N + S V N Sbjct: 116 LTGYPAAGTPP----------TIQQGADPVPLSIPEGMMNAKSTTSGSMVANLKSTHSVP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + N + T ++++ N Sbjct: 166 ANG------------------------TFDPNKSDSYNYVNTITTYDSLGNAHNVNAYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ + DG V + K +L + + Sbjct: 202 KTADNKWDVYTQDGSVTGAPAA------KAGSLNFNASGALTETLDA------------- 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 Q + S + + Sbjct: 243 ------SGVATADFNLTIPMSAKDGAPAQNFTLSFAGSMQQNVGSDSVSKVAQNGYTAGE 296 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +N + ++ Y + + +A + L N W E S + Sbjct: 297 YNNFQIEKDGTVVGIYSNQQKQVLGQIVLANFSNPEGLASKGDNV--WQETGASGQPRVG 354 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F +++ V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 355 TAGGGGFGNLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 410 >gi|117621121|ref|YP_857337.1| flagellar hook-associated protein FlgK [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562528|gb|ABK39476.1| flagellar hook-associated protein FlgK [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 666 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 48/367 (13%), Positives = 119/367 (32%), Gaps = 7/367 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT--QRSENKN 61 + + + + NI N +++ YVR T+ + + Sbjct: 3 SDLLGIGTSGVMAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNANGLGTGDMLTERVINA 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +SA A + + D +NS IS + + ++ ++ Sbjct: 63 YAQGEVRRDTSAFYASSTRYQQLANTDSLLGDT--SNSVGAAISSYFEGFHTANEAPADI 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 KT + +V F+T + ++ K + I E + ++ + +N AI Sbjct: 121 SGRKTTLSQLSGMVNRFHTLSAQLDKQTDTINTTIGDEAKRVNSLINSINDLNQAIIRTQ 180 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + DQRD ++++SE + I T+ ++N M+V S G +L Sbjct: 181 GTPEENLMLFDQRDEAIRQLSEKMEIRTVPQDNGSMLVNMSTGHSLVLNGSVAQLSVVPG 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + ++ + G + L R+ + + +L ++A + + Sbjct: 241 NPDAREP--ELQLNMDPNKITLNNKDIGGGLGGLFSARND-LEPSKRELGQLAAAMADAM 297 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 ++++ + + +N G + Q + + + Sbjct: 298 NQQNRLGMDLDNELGGDLFSLGSSDGLAYSQNTGSGAAKVSFVPGKGTEVTTFDYEVQFS 357 Query: 362 LWNVKNL 368 + Sbjct: 358 SATGYEV 364 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 54/212 (25%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +S+ P + ++ Sbjct: 455 TNTGAGSGFGTNSLNPASPQVVKIDGSGNYQVYAADGTTLIGVAPASSKGQNLMAALESP 514 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + T P Y + + + L + + Sbjct: 515 LGGPKVYATPAQTPGYEFSITGKVEAKDSFTLSYNTDGFADNANGLALADLQNKDLVRKS 574 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 N +T E + + + S + + + + GV+L+EE Sbjct: 575 SNAGTSNDKMTFNEAYSSLVTGVGNTASQAKSQLKADETKLTQSRGIFESVSGVSLEEEA 634 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI+ +QSY S +++ + TLL V+ Sbjct: 635 ANLIRYQQSYAASAQIVSTAKTIFDTLLSSVR 666 >gi|156934440|ref|YP_001438356.1| flagellar hook protein FlgE [Cronobacter sakazakii ATCC BAA-894] gi|156532694|gb|ABU77520.1| hypothetical protein ESA_02271 [Cronobacter sakazakii ATCC BAA-894] Length = 409 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 53/476 (11%), Positives = 115/476 (24%), Gaps = 72/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D V + F L + + + +S N+ Sbjct: 62 GDGVTTNTGRKLDVAISQNGFFRLLD------SNGGVFYSRNGQFKLDEKSNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +Q I L I + S+ T N + ++ Sbjct: 116 VTGYPATGTPPTIQQGAD--------------PIPLTIPTAQMPASQTTSANFVMNLNSS 161 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A D + S + + + N +++ +Y + ++ Sbjct: 162 DDVPAQSPFDPANSSTFNKSVPLTVYDSLGNEHNLKLYY---------------VKTADN 206 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ + G + ++ + + + +FS Sbjct: 207 QWDVYNNDTSVSGSTPTKLTSLTFSDSGALTSITNAAPAGSQQVPISVASLNGSAAFTFS 266 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 Q L + K Sbjct: 267 MNLTGTT--------------------------------QQNSGANVLLTSNQNGYKPGD 294 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ +Y + ++ +A L N W S L Sbjct: 295 LVGYQVNEDGSLVGNYSNEKSQLLGQIVLANFANPEGLSSQGDNV--WSASTASGVALLG 352 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 353 SAGTGNFGKLTSGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 408 >gi|323967017|gb|EGB62443.1| fagellar hook-basal body protein [Escherichia coli M863] gi|327253475|gb|EGE65113.1| flagellar hook protein flgE [Escherichia coli STEC_7v] Length = 401 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T Sbjct: 160 SSDPLPSVKGFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPK 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++S+ + G I Sbjct: 220 GTANPATTLLFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|153951647|ref|YP_001398768.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. doylei 269.97] gi|152939093|gb|ABS43834.1| putative flagellar hook-associated protein FlgK [Campylobacter jejuni subsp. doylei 269.97] Length = 608 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 56/514 (10%), Positives = 148/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + L + S+ + + + S D N + + Sbjct: 61 AIESIVRLHDEYSYYKLKSASNQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + + E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINKIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A S A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALSTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSVVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + A Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NNDVDDHINASFNYDAKTGDGLFQINAKSGYKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S +++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 127/392 (32%), Gaps = 6/392 (1%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 ++ D+ + + T + S+E +S + I + + ++ ++++ + Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSV--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 D +I + L K++ D LD + + + Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 S+ + + G R I + + + + + N Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +I A + A + + N+++ + I D + Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFNYDAKTGDGLFQINAKSGYKVAIEDKGTNFA 459 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G + + S L D +V + D+ N + Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 F G N+T+ EY R G + + +++ ++ ++ ++N + Y + GVN EE Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L LI+ + SY + K++ D+ML TLL Sbjct: 576 LVALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607 >gi|27380964|ref|NP_772493.1| hypothetical protein bll5853 [Bradyrhizobium japonicum USDA 110] gi|27354130|dbj|BAC51118.1| bll5853 [Bradyrhizobium japonicum USDA 110] Length = 627 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 57/453 (12%), Positives = 143/453 (31%), Gaps = 18/453 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-----TMTTISPENVTVVTQ 55 M L + A + + + N+ N+ YV + T Sbjct: 1 MGLSSALASAMSGLRANQAALSIVSSNVANSQTPGYVVQTPNQIEVTTGDFGSTAMTTGV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 E + L + G + + + + + + ++K +L++ S Sbjct: 61 SRELDSYVLNQLRTETGGSGYADQMANILKQLQSVYGTPGNSGTLETALNKFTTALQALS 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + A+ + Q N + + +Q +R++ ++++ + ++ +N Sbjct: 121 TSAGASSAQTVALGAAQALAQQLNVTTKGIQSLRSNVEQDLGTSAQQANASMQQIADINT 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV---- 231 ++ +A+ A +DQRD + +S+ + + +N +YT+ G L Sbjct: 181 KLQGLSANDPSAATLMDQRDQAINTLSKYVDVRVTTDGSNQANIYTTTGIQLVGAGLASQ 240 Query: 232 ---------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 ++ + + N +G V + V G+I A L++RD Sbjct: 241 FTFASAGALSATSLYDMDPAKSGVGALNIRLPNGSQVDVVANNVVSSGQIAADLKLRDQT 300 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + QNQ+D++A + + S+K P F D N Sbjct: 301 LVQAQNQIDQLAATMSSALSDKTTAGSTVSGPPAGFDMDLAGAAPGNTVNITYTDTTTNT 360 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q + + D ++ + N + + + + ++ + Sbjct: 361 QRQVTLVNVTDPAALPLQNATNANPMRIGVNFSGGMGAIASALNTALSGSHLSFSAAPSP 420 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 ++ + N + + ++ Sbjct: 421 ATATTLRVTDDNTGLAKVNSSSISKTISSLTSG 453 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 97/331 (29%), Gaps = 1/331 (0%) Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 +R + + +I L +S + D ++ Sbjct: 296 LRDQTLVQAQNQIDQLAATMSSALSDKTTAGSTVSGPPAGFDMDLAGAAPGNTVNITYTD 355 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 +T +V +D L + N ++ +S + S Sbjct: 356 TTTNTQRQVTLVNVTDPAALPLQNATNANPMRIGVNFSGGMGAIASALNTALSGSHLSFS 415 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +R + +++ + S G + G Sbjct: 416 AAPSPATATTLRVTDDNTGLAKVNSSSISKTISSLTSGNPQLAVFTDGGQALYTGAITAS 475 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G++ I VN Q S+P+ L + + + + S++ Sbjct: 476 GSQMTGLAGRIAVNTQLVSDPTRLSVYNTSPVTPAGDTTRSDYLYSQLTNAVFSYSPTTG 535 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 A ++ Y + + + + L VV + + +++T VNL E Sbjct: 536 LGS-ANQPFTGSVSNYLQQFLSIQGNAATQATQLQQGQSVVVSTLQAKFNSTSSVNLDSE 594 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S LI+++ +Y + ++ M+ TL++ Sbjct: 595 MSNLIQLQNAYAANAHVMSVVQSMMNTLIQA 625 >gi|205373385|ref|ZP_03226189.1| flagellar hook protein FlgE [Bacillus coahuilensis m4-4] Length = 426 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 123/478 (25%), Gaps = 52/478 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + NA + I NI N + + + Sbjct: 1 MLRSMYSGISGMKNAQTKLDVIGNNIANVNTYGFKKGRVTFQDLMNQTMSGATTPTENR- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +Q L A +++S + + +N ++ Sbjct: 60 --------GGQNAKQIGLGGTIASIDIISTQGSLQTTGRSLDVAISGDGYFVVRNGQNEM 111 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + +Q +ADA+ I+ S+ T+ + T Sbjct: 112 YTRAGNFYLDSNGSLVDGNGNLIQGYQADANGVIDYGGMTDIVIDSDSTMAPRSTSEVTF 171 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + V D + NS Sbjct: 172 NGNLKASAPIYDATNATTQAATADGRVTVD------YSVKDSLGSDIPLKVTFTKTASNS 225 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + T ++ S GK+ Sbjct: 226 WDTTISYTDTLGATQTITGPALSFSSDGKL------------------------------ 255 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + Q I Q+ S+ S + + + + Sbjct: 256 ----DPATVTTLANINLPVNNINPGAVSPQAIDIDFAQITQFDSSTSANINTINGNSEGY 311 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ Y + + +A + LL N+ N S + Sbjct: 312 LESFTISSSGEINGIYSNGEVQAISQLVMATFSNAGGLLSQGGNTFT--ASNNSGLPNYG 369 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ I V+L EE + +I ++S+ + ++I +D++LQ L+ + Sbjct: 370 IANEG-RGAIQSGSLEMSNVDLSEEFTEMITAQRSFQANTRIITTSDEILQELVNLKR 426 >gi|261253614|ref|ZP_05946187.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] gi|260937005|gb|EEX92994.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] Length = 434 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 42/484 (8%), Positives = 116/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 A + + A + NI NA+ + + V Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + + ++Y Sbjct: 63 VAQ---QFHEGSSIYTNNPMDLRIGGTGFFAVAKDRLTPTSNE---LTRNGAFHLNKDNY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ V ++ + + I + + Sbjct: 117 MVTANDEFLLGYQVNKDTGDVLSY---------------EPSPINIPKEFGKPKQTANIE 161 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + D D S I + + + Y T T Sbjct: 162 VGVNLPAGGELKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTY 221 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + G + +L Sbjct: 222 YTVTDSAGEKPLNITGGDATSPTGHIGHTMKFNNDGTLASL------------------- 262 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 N + P A+ ++ + Q +S + Q+ + + Sbjct: 263 -----------NNGQNIVSEPLGTGANPVELNGADVNQTLSFGLQDATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 EDGATTGFLTKVDFDENGSVLGTYSNGENIILGRVAMVRVANEQGLDK--KGGTQWDSTQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F IS +++ +EL LI ++++ +++ + ++ Q Sbjct: 370 FSGDKIWGESNKGSFGSISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|148358806|ref|YP_001250013.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|296106851|ref|YP_003618551.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] gi|148280579|gb|ABQ54667.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|295648752|gb|ADG24599.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] Length = 437 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 51/482 (10%), Positives = 125/482 (25%), Gaps = 58/482 (12%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56 FN A + +++ I NI N+ + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +++ L ++ + F L + + + + E+Y Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + L + D+ + ++ +++ A+ +S S+ N Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANITPRASSNVSVGVNLNSQSKAPNV- 170 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + S N +Y S G + ++ Sbjct: 171 ----------------------DWVGGASPASDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + S + V+ + + A QN + Sbjct: 209 DPTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 S ++ +P I + ++ + + Q+ S + + Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + Y + + +A +L W E S Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTSS 374 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ V+L EL LI ++++ + + I D + QT++ Sbjct: 375 GQPLVSAPGSGGLGLVNSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTII 434 Query: 477 EG 478 Sbjct: 435 NI 436 >gi|207108518|ref|ZP_03242680.1| flagellar hook-associated protein FlgK [Helicobacter pylori HPKX_438_CA4C1] Length = 267 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 13/246 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51 +L+ N + NI NA ++ Y R+ + T V Sbjct: 3 GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + S D S + +S Sbjct: 63 VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN + + + E + N + + ++ A +E++ I + S++ Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181 Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +N IK +K A++ D+RD L + E++G + + + D E Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241 Query: 230 TVPRDI 235 + +I Sbjct: 242 SYNLNI 247 >gi|303249022|ref|ZP_07335267.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489608|gb|EFL49548.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 519 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 50/520 (9%), Positives = 122/520 (23%), Gaps = 46/520 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSEN 59 + + + S A+ N+ N Y + + Sbjct: 2 SAIWTGVSGLLSYSTGIANTGNNLANTGTTGYKSSRLLFADMISEMAGGTSDGSQIGTGV 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLESYSKN 117 + + + S I + + + + + + Y Sbjct: 62 QVGSVSMTTSTGSPISASQSMDMAINGERGYFVVKKPGTDKTYYTRDGAFNFDVNGYLTT 121 Query: 118 LSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + +D A + T +V D +I+ S + + + N Sbjct: 122 ETGLNVQGWAVDQTAVTAAKRTGTVLSQVPTTGTLTDIQIKDYTSAAQATSAVTMITNLD 181 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIS--------------TIVRNNNDMVVYTS 222 + + + + S I + T V Sbjct: 182 GQTEPGTLDATDPYFSMFKRYNADNSPPISNTAYSAPIKVYDSEGGTHTLTTYYSKVSDE 241 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV------------------VVSSNQG 264 +G +E + + +S T + + + G Sbjct: 242 NGKEYWEYMVTMPPEDDGSSTTSGTSKAGVLMIGTLTFSAQGELENETAFTPSGSDPTDL 301 Query: 265 SAVPKGKIKALLQ----IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 ++ + + N L V S + S I Sbjct: 302 ASWTQASLDGSGNPKLNATFRSASNSSNILSSQPIVYKDGLSSSNASWSASAPATAADIG 361 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 Y ++ ++ + + + Sbjct: 362 TLTSANAGFNSANTKNAATCTSNYSTSSYTASSTQDGYASGTLLSTSVDENGVISGTFSN 421 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +A L N + S L + VF+ +S + Sbjct: 422 GQTIELFVVGLADFVNPTDLYREGNNLLS--ATKESGDASLGRANSGVFDSVSGYTLESS 479 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E+ LI +++++ ++K++ D+M+Q LE + Sbjct: 480 NVDMATEMVNLITLQRAFQSNSKVVTTADEMMQKALEIKR 519 >gi|323976551|gb|EGB71639.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 401 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T Sbjct: 160 SSDPLPSVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPK 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++S+ + G I Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|83816398|ref|YP_446735.1| flagellar hook-associated protein FlgK [Salinibacter ruber DSM 13855] gi|83757792|gb|ABC45905.1| flagellar hook-associated protein FlgK [Salinibacter ruber DSM 13855] Length = 600 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 55/462 (11%), Positives = 140/462 (30%), Gaps = 22/462 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----------------RRDTMT 43 MS+ ++F+ ++ + +NI NA+++ Y + Sbjct: 1 MSVNSLFDIGSTSLRAVGEKIDATSQNIANAESEGYRRRRVSLSSRSVAATGLYASNGAQ 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 ++ V V M + S+ R + E A + S + Sbjct: 61 DVTSSGVGVEQFERVRDGMLVGARNEARSSESAAREEGRVLGVLEGALA-TDTDASLSAS 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + L D + + N + ++V+ A ++ F + + ++ + K + + Sbjct: 120 LQGLADGFSNLANNPESQGVRESVLGRARQLTDTFGRLDQRLGELTSSTTKALASNVEKA 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L ++ +N+ I+ A + DQRD ++++S+++ + ++ + T D Sbjct: 180 NGLLDKVASLNEQIESARAGGSPDYAAEDQRDQTVKELSKLLPVEAQENRSDGYTL-TVD 238 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G T+ + + + GV + G LL + Sbjct: 239 GMTVVQGDDATTLSTENKNDPSKPTRVEFGDTGVAFDPGEEGGGEIGAQARLLNDTLTGK 298 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 Q++LD +A ++ + + G + + + Sbjct: 299 QSVQDRLDTLADSVVEKVNTAHRKGADQNGDTGENFFVDKSRTAGNIELNVDGPKDIAAV 358 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + +G ++ + + + V+ I+ + L Sbjct: 359 ATPALGTPEGNETAVTIGQGDFGDSSGAGNIEDRLTVGPDGSASTVEVSSISPDGNLPGG 418 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + + N S S GV++ Sbjct: 419 VEGGTFDITVEDNANTGELDF---TINRPDGSTSAQTGVDVS 457 >gi|54308097|ref|YP_129117.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46912523|emb|CAG19315.1| putative flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 435 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 41/486 (8%), Positives = 117/486 (24%), Gaps = 66/486 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 FN + + + + + NI NA+ + T + V Sbjct: 2 GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ + + F A+ + + N + + Sbjct: 62 SVVAQ---QFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNSN---LTRNGAFHLNKD 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L +D + V ++ A +V ++I Sbjct: 116 NQIVNSEGQYLLGYGVDQETDQVTSYEPQAMKVPDQFGQPRASTSIDIG----------- 164 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + +++ D D S + + + + Y + Sbjct: 165 ----VNLPASAEAKDATLFDFNDSNSYDKSTSVSMYDSLGQPYKLSTYYVKDNSAPNRWS 220 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + +N + G + + Sbjct: 221 VYYTGTDATGEKPINITNGGTTAANGHQGSTLDFNTDGSVAQINN--------------- 265 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + ++ D + D + + Sbjct: 266 -GQPILSEALGADGAGLDLNGADETQTLTMNFDSPTQYAAPFEIR--------------K 310 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ ++ Y + N + + L+ + W Sbjct: 311 FSENGATTGYLAKVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVS--KGGTQWAT 368 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + SQ F + +++ +EL LI ++++ +++ + +++ Sbjct: 369 GQDSGAAIWGEASQGAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRALEVDNQLQ 428 Query: 473 QTLLEG 478 QT+L+ Sbjct: 429 QTILQI 434 >gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae SmR1] gi|167731109|emb|CAP19667.1| flagellar hook-filament junction protein 1 [Herbaspirillum seropedicae] gi|300074143|gb|ADJ63542.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 56/420 (13%), Positives = 136/420 (32%), Gaps = 15/420 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53 +F+ Q+ A A+ NI N Y R++ + + + V Sbjct: 3 TNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQVN 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + +K A +S L + + ++ + + + ++++ Sbjct: 63 EIKRVYNDFLNKQ--ALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + ++V+ A +V ++ ++ A + +I ++++ F +++ + Sbjct: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 Query: 174 NDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N AI T +D LDQRD ++ ++++++ I+T+ ++ + V+ G +L Sbjct: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQL 290 + V+ I G S+ S G + LL+ R + QN L Sbjct: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A + +F+++ + + G + + T + Sbjct: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 D + L+ I G + Sbjct: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 34/394 (8%), Positives = 79/394 (20%), Gaps = 6/394 (1%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L + +F L + P + + + + Sbjct: 357 SALTTSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAA 416 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 S I I+ + + N + + Sbjct: 417 GNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTS 476 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN------FE 238 D+ + V + + + G T+ + F+ Sbjct: 477 LDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFD 536 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + T+TS + G + ++ + P K I V Sbjct: 537 YKSGMTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTKPT 596 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 P + G + I+ + + Sbjct: 597 TLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAI 656 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N + + A + + + ++ Sbjct: 657 SGQPGNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEI 716 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 + + + I + GVN EEL+ +I Sbjct: 717 NVTNTAEKARLTAIQNQQQSESGVNQDEELAHMI 750 >gi|238752866|ref|ZP_04614331.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] gi|238708905|gb|EEQ01158.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] Length = 411 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/477 (10%), Positives = 108/477 (22%), Gaps = 74/477 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A + ++Q ++I NI N+ K + T P V V Sbjct: 2 SFSIANTGLSAVTEQLSTISNNIANSATKGFKASRTEFASMYAQSQPLGVAVSGVSQSIN 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D + +A+ F +K + N S Sbjct: 62 K--DGSIDRTGNAMDLAIAGNGFFVVKN------SNGDEAYTRAGMFTSDKSGMLVNGSG 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D A + + ++ + + + + Sbjct: 114 MKLQGYPVDAAGNIQTGI------ISDLKVSTAGLPAKASTQIDFMANLPAGAAVPLAAF 167 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 S D++ + + ++ N + Sbjct: 168 DKSNPDSY-NNMSMSTVYDSLGREHAVAQYFVKNAPPPPPGPLAPPAPIVSEWTVYTAID 226 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + S+ + D V + + G Sbjct: 227 GVIPANNPSHTLVFDVSGVLTLGNNMAISGGYG--------------------------- 259 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 I Q+ SN + Sbjct: 260 -------------------------SPGAAPYSIDVDYAGTTQFDSNFLPTTNKSDGYTS 294 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N + + + + + +A L A+N W ++S + Sbjct: 295 GSKNGERIENDGSVYATFSNGERMLQGRLVLANFANPNGL--AAQNGTTWSATSKSGAAL 352 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 L + I V+L EL L+ +++Y + K+I D M+ L + Sbjct: 353 LGEAGSGMLGSIEAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 409 >gi|118474675|ref|YP_891310.1| flagellar hook-associated protein FlgK [Campylobacter fetus subsp. fetus 82-40] gi|118413901|gb|ABK82321.1| flagellar hook-associated protein FlgK [Campylobacter fetus subsp. fetus 82-40] Length = 617 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 50/407 (12%), Positives = 120/407 (29%), Gaps = 26/407 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + N A Q +NI N ++ Y R+ + + + Sbjct: 1 MGIFDSLYTGASGLNAAQLQIQVTGQNITNINSDYYTRQRVVQSATTPLHTSPGDVGMGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + T + L ++ Q D + I + Sbjct: 61 RIDTIIRIHDEFTFDKLKTATTNKENTAYKQQVLQEIAQRF-PDLKDTGLLKDIENYFGA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 +++ + E +++ + N ++ +++ + + +++++L + + R ++ Sbjct: 120 WNNFASHPYESAQKTNLLNLTSTLTNRLNDTSSQLKTVHNNINEQVKLAVDEINRIGKQI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222 +N I+ + +A+D D+RD L ++ I+ IST + + + Sbjct: 180 ADLNAQIQKVETGTTQNANDLRDKRDQLELTLANILNISTFKNDISSNSTFGGTLTDQGR 239 Query: 223 ------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 DG TL + V N N + + S + GK+ A+L Sbjct: 240 NYNLNIDGITLIDGVNFHPLTLDTNGNKDGFT-NIYYELNDGTRVDMASKINSGKLGAML 298 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 +R + D M + N A + + Sbjct: 299 DLRGRTMGDNGEVKDGMITEFRNNLDTFAKTLIIQTNNIYASAAQEGMSSTDLSQMKPNT 358 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 T+ Q + +F + + ++ + Sbjct: 359 TLQNFDQNVQSGNFDVIIYNSQGVEVARKTINVNSSTTMDDTKQGNS 405 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 62/479 (12%), Positives = 147/479 (30%), Gaps = 20/479 (4%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 N+ S Q ++ NI N + + I+ + ++ + + + Sbjct: 147 LNDTSSQLKTVHNNI-NEQV-----KLAVDEINRIGKQIADLNAQIQKVETGTTQNANDL 200 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 ++ L+ A +S + +S + + L D +Y+ N+ L V + Sbjct: 201 RDKRDQLELTLANILNISTFKNDISSNSTFGGTLTDQGRNYNLNIDGITLIDGVNFHPLT 260 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + N N I + + +++++ +++ + + + + Sbjct: 261 LDTNGN--KDGFTNIYYELNDGTRVDMASKINSGKLGAMLDLRGRTMGDNGEVKDGMITE 318 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 L ++ + I T + S + N + + Sbjct: 319 FRNNLDTFAKTLIIQTNNIYASAAQEGMSSTDLSQMKPNTTLQNFDQNVQSGNFDVIIYN 378 Query: 254 IDGVVV---------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 GV V S+ I D ++ Sbjct: 379 SQGVEVARKTINVNSSTTMDDTKQGNSIVGDFNSDTDDNNNGNLNDDVNDFFTAKFNYDE 438 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL-- 362 G+ P + +++K + S ++ S++ Sbjct: 439 KTGLGHLSFSPLFSSGEYTMAIEDKGTNFPGVFGMSQFFEGDSASNIKIESSLASDTSKI 498 Query: 363 -WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 N + G + N + ++ F G + T+ Y R + + L Sbjct: 499 KGNKAPVDGDNSMANAMINLQYQSLNFYANDGTIRSETITGYYRYLTTDIASKTESVNAL 558 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ ++ + + GVN+ EEL LIK + SY + K++ +KML+TL+ + Sbjct: 559 NNTNLSLYKSVNAEFQSISGVNMDEELGNLIKFQSSYGAAAKIVTTVEKMLETLIGMKQ 617 >gi|302185583|ref|ZP_07262256.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 105/478 (21%), Gaps = 40/478 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRIEFADQYAQSIRGTSGGTSVGSGVT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + +S + Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTGNSLDLAINGNGFFMLSNKGDSLYTRAGAFHTDKDGYVVNSSG 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D V+ +L + + + S +++ + Sbjct: 122 MNLQGYNVDANGTVM----------------VGSSGDLRVDSSNQLASPTSMITNTANLN 165 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S D + + + N + M Y Sbjct: 166 STSAIPTVTPFDATNSKTYNDTYSTTVFDSQGNEHRMESYF-----------AKNGTNSW 214 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Y++ N V +N + G + + N + Sbjct: 215 TMYSLIDGRNISNPASTVPDANNLTFDSSGSLIINTGTTPTSPSPSANVAVNADGTFKVT 274 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G + + + GI + + Q S + Sbjct: 275 NWVPAIQTGTGNSAT------WGPNGAAGVASGIQLDMTASTQTASATGRSAQAQNGYAA 328 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ L Y + +K + L W E S Sbjct: 329 GQIKDMSVDASGKLFASYTNGQSKVIGQVSLTSFANVQGLAP--AGGTNWRETFSSGIPG 386 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +++ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 387 TGAPQSGTLGYVTGQALEESNVDLTLELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 444 >gi|296103611|ref|YP_003613757.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058070|gb|ADF62808.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 399 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 54/473 (11%), Positives = 116/473 (24%), Gaps = 76/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++ + + A++ + NI N+ + T + Sbjct: 2 GFSQGLSGLSAAAKALDVVGNNIANSQTVGFKAGSVSFADIFAGSTGMGV---------- 51 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + N + + G+ Sbjct: 52 ----------------QVAGVSQNFGDGALMNGASALDMGISGRGFFRMVDEAGSVFYGR 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ N + D I + + A + + + Sbjct: 96 NGQFEQDQNGFIVNKTNGLFLTGYQATDGVINPGAQVGPIRIPTDDMPPAASTKGSVAGN 155 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D ++I + +N T +++ + +T Sbjct: 156 LKSDD------------KVIPATPAFDPDNADTYNYVSEVTATDSLGNKHAIKVYYVHTA 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 E +DS P E Sbjct: 204 EGEWKA-------------------------HAQDSTAPGAAGGWSEQTLKFGTDGKLTA 238 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P+ N + A +LD Q S+ D +N Sbjct: 239 PVTLNIKGAAYNGSAALDLNLDLN-----------ITQNASDTQVKLDEIDGQAPGKFNS 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++I Y + + +A L + N W E ++S L Sbjct: 288 YQVSDTGEVIAIYSNGKRQTVAQVVLADFANAGGLEQQGNNL--WAETSQSGQPFLGTSG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F IS + + VNL +E+ +I +++Y +++ I ++LQTL+ Sbjct: 346 SGSFGDISGNMLESSNVNLGDEMVNMIVYQRNYQSNSQTIKTQSEVLQTLVNL 398 >gi|145298497|ref|YP_001141338.1| flagellar hook-associated protein FlgK [Aeromonas salmonicida subsp. salmonicida A449] gi|142851269|gb|ABO89590.1| flagellar hook-associated protein FlgK [Aeromonas salmonicida subsp. salmonicida A449] Length = 666 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/384 (11%), Positives = 119/384 (30%), Gaps = 7/384 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSENKN 61 + + + + NI N +++ YVR T+ + Sbjct: 3 SDLLGIGTSGVLAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNSVGMGTGDMLTDRVINT 62 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +SA + +++ D +NS ++ + + ++ ++ Sbjct: 63 YAQGEVRRDTSAYYASASRYEQLSNTDILLGD--ASNSVGAAVTSYFKAFHTANEAPADI 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 KT + +V F+T + ++ K + I E + ++ + +N AI Sbjct: 121 AGRKTTLSELSGMVNRFHTLSAQLDKQTDTINTTIGDETKKVNNLINSINDLNQAILRTQ 180 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + DQRD ++++SE + IST+ + N M+V G +L Sbjct: 181 GTPEENLMLFDQRDEAIRQLSEKMEISTVPQANGSMLVNMRTGHSLVLNGGVAQFSVVSG 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + + + + G + L R+ + + +L ++A + + Sbjct: 241 NPDSRESELQLTMGANKTTISD--KDIGGGVGGLFSARND-LEPSKRELGQLAAAMADAM 297 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + ++ + + +N G + Q + + + Sbjct: 298 NRQNRLGMDLDNELGGDLFSLASSDGLAYEQNTGTGAAKVSFVPGKGTEVTTFDYEVQFS 357 Query: 362 LWNVKNLAGYPDLINHYCDSFNKN 385 + N + Sbjct: 358 SATGYEVFSLDKDGNRTSLATGST 381 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 55/211 (26%) Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 +++ P + ++ Sbjct: 456 NTGTGSGFGTNTLDPAVPQVVKIDGSGNYEVYAADGTTLIGVAPASSKGQDLMASIESPL 515 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + P Y + + L + + Sbjct: 516 GGPKVYADPTQAPGYEFSITGTVRANDSFTLSYNQDGFADNANGLALAELQNKDLVRKST 575 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 N +T E + + + + L ++ N + + + GV+L+EE + Sbjct: 576 NAGTSNDKMTFNEAYSGLVTGIGNQTNQAKTLLKANETKLNQSTSIFESVSGVSLEEEAA 635 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI+ +QSY S +++ + TLL V+ Sbjct: 636 NLIRYQQSYAASAQVVSTAKTIFDTLLSSVR 666 >gi|301051140|ref|ZP_07197970.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] gi|300297161|gb|EFJ53546.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] Length = 401 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNKWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++S+ +P G I Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTKDIPPGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|283850852|ref|ZP_06368138.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283573775|gb|EFC21749.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 551 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/553 (9%), Positives = 128/553 (23%), Gaps = 79/553 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47 L + S + ++I N+ N + + T Sbjct: 4 GLGTSMWSGVSGLLANSTKMSTIGNNLANVNTVGFKGARTDFMDLMSANIGTAAGDKQIG 63 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL-------KEMMSADDHYNNSP 100 V V T S + L S+++ F + + + Sbjct: 64 RGVRVGTVVS---DYSQGGLETTSNSLDMAINGNGFFMVKQKSQVGSNGKMLNTGNQTNY 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDN-------AEEVVQNFNTSAREVQKIRADAD 153 + Y + +D A V + + E+Q IR Sbjct: 121 YSRAGNFSFDSDGYLVTPQGLAVQGWKVDQERIDAANASGTVLSQTPVSGEIQDIRLSQF 180 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK--------ISEII 205 S++ + + A ++ + + + D + Sbjct: 181 TSPAKATSSVTLITNLDSDTKSASTRSASNANYYYAMTESWDGTQDPAMPSTAYSYQTTV 240 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS----S 261 + + + + Y + + + SN G + + Sbjct: 241 KVYDENGSPHTLTTYYDKVADVNGKEYWEYTVTCAPNEDGRVASNGTPFGGTEAAGLLMT 300 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + G ++ + D + N ++V + Sbjct: 301 GTMTFDSSGSMENMSAYTMKASNATPGDFDATQWTAADVSNGYPVFTANFKSVSNASFTN 360 Query: 322 GIKDLDNKLCQGISETICVN----------------------------------PQYRSN 347 + N I Y ++ Sbjct: 361 STNNPLNIALNFGISNIAGFSAGASGSSLATAGHDPANLVHFNPSTMKVNSNVTTNYATS 420 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 S + + L N ++ L + + + +A L N Sbjct: 421 SSTVFSSQNGYTSGLLNNVSVDADGILTGSFSNGQTQKLWALALANFTNLQGLSREGSNL 480 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 S + + IS + + V++ E+ +I ++ + ++K I Sbjct: 481 YA--ATLESGQGTTNRANTGSVGSISGNTLESSNVDMATEMVSMILTQRGFEANSKTITT 538 Query: 468 TDKMLQTLLEGVK 480 D ML +++ + Sbjct: 539 VDSMLSEVIQLKR 551 >gi|57169005|ref|ZP_00368134.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter coli RM2228] gi|305432258|ref|ZP_07401421.1| flagellar hook-associated protein FlgK [Campylobacter coli JV20] gi|57019671|gb|EAL56360.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter coli RM2228] gi|304444606|gb|EFM37256.1| flagellar hook-associated protein FlgK [Campylobacter coli JV20] Length = 608 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/514 (11%), Positives = 145/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 TV + + L S+ + + + S D N + + Sbjct: 61 TVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ ++ ++ + ++ N + + KI+ + +I+ + + R E+ Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 +N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGVNFHPLKLD---YDDKNKAYSIYYETPDEKVRDLTAKINGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPI--------------AG 309 L +R D ++ + + L+ A+ +I + Sbjct: 297 LDLRGRNYSKSEGKYSDGIIQGYMDSLNTFAKTMINETNNLYASSAKSSVTSDYLPGLTE 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N N A Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITVDVNTTMEDIMRQITANTDDNGNNNA 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + + Sbjct: 417 NDDVDDHINASFSYDAKTGDSLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTNASDI 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S ++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASLNGVDSGNDMANKIIQLQ 510 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 S+ + ++ + D+ N F G N+T+ E Sbjct: 471 TNASDIKVKDSILNDPSTVRASLNGVDSGNDMANKIIQLQYDKVNFYNEDGTIDNLTMEE 530 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 Y R G + + +++ ++ +Q ++N + Y + GVN EEL+ LI+ + SY + Sbjct: 531 YYRKLTGKIGSDGENNNVVNASNQTLYNSVYSEYQSKSGVNTNEELAALIQWQSSYGAAA 590 Query: 463 KLIMFTDKMLQTLLEGV 479 K++ D+ML TLL Sbjct: 591 KIVTTVDQMLDTLLGLK 607 >gi|323705438|ref|ZP_08117013.1| fagellar hook-basal body protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535340|gb|EGB25116.1| fagellar hook-basal body protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 424 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/478 (8%), Positives = 106/478 (22%), Gaps = 54/478 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + + I NI N + + ++ Sbjct: 1 MLRSMYSAVSGLKANQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQDN-- 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L + ++ + S +S + + + Sbjct: 59 ------GGGTNPQQIGLGVAIASIDTLFSNGGSQRTDNPTDLSIDGNGFFIVNNGGANLY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + I D + + + + A Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVMGWISQDGKTVNTDTGNLSPISIKNWSSTSPASTKTIQ 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + LD + +S + I ++ + + NF+ N Sbjct: 173 LGGN----LDAGTSVGSSVSYNVTIYDSQGGSHVATIQFTKQDNAGNWNATITNFDGTNL 228 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + F V+ Sbjct: 229 STPVTIGTITFDSSGVI----------------------------------------QQP 248 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 V + + I+ + Y + + Sbjct: 249 APPASPVGIFTVGVSSLPITNTNATLGDGTNITVDLSKLTMYSNPTDIRELSKDGNSAGS 308 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ Y + Y + + +A L + ++ S + Sbjct: 309 IESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTM--FINTVNSGDPMIG 366 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I V+L E + +I ++ + + K+I +D++LQ L+ ++ Sbjct: 367 AANTGTRGTIDPGTLEMSNVDLANEFANMITTQRGFEANAKVITTSDEILQDLVNLIR 424 >gi|148256817|ref|YP_001241402.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp. BTAi1] gi|146408990|gb|ABQ37496.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein) [Bradyrhizobium sp. BTAi1] Length = 611 Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 58/442 (13%), Positives = 139/442 (31%), Gaps = 20/442 (4%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQRSENKNMFDK 65 + + + I N+ NA+ YV + + + V + Sbjct: 1 MSGLRSTQAALSIISSNVANANTPGYVAQNPNQIEVASGGFGSTVMTTGVNRQLDLFVQN 60 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L +S + + + + + + ++ +L+S S N S Sbjct: 61 QLRTETSGGAYADQIANILKQLQSVYGTPGGSGTLETSLNNFTTALQSLSNNPSNQSAQS 120 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + A+ + Q N + + +Q +R++ +++I ++ +S++ +N ++ S Sbjct: 121 VAMSAAQGLAQQLNATTKGIQTLRSNVEQDIGNSVTQANAAISQIATLNTQLQGLNTSDP 180 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------------FETVP 232 + DQRD + +S+ + I + +N + V+T+ G L T+ Sbjct: 181 LSATLQDQRDNAINTLSKYVDIRVVSDGSNGVSVFTNSGVQLVGAGLSSQFTFSSPGTLD 240 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + N +GV + + + G+I A L++RD + Q Q+D+ Sbjct: 241 ATSQYNSNPTKSGVGQLNIKLSNGVSLDVVSNNLLNSGQIAADLKLRDQTLVQAQTQVDQ 300 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +A + + S+K P F L + + Sbjct: 301 LAATMASALSDKTTAGTAVAGPPAGFDVSTTGLLAGNTINLTYTDSSNVQRQVKIVNVND 360 Query: 353 DGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + G + + N + N + T L + Sbjct: 361 PAALPLQNATNANPSYVGVDFSLGMASVVSQLNSALGSAHLQFSNPSGTTLRITDDGTSQ 420 Query: 411 LEKNRSDSHDLHMKSQVVFNHI 432 + + + Sbjct: 421 ATVKSASATTTVQTLASGSAQL 442 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 100/337 (29%), Gaps = 4/337 (1%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + ++ D+ + + + + + + + D L Sbjct: 277 SGQIAADLKLRDQTLVQAQTQVDQLAATMASALSDKTTAGTAVAGPPAGFDVSTTGLLAG 336 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + I T N V + + N S + + + Sbjct: 337 NTINLTYTDSSNVQRQVKIVNVNDPAALPLQNATNANPSYVGVDFSLGMASVVSQLNSAL 396 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 L+I D + + S + ++ + Sbjct: 397 GSAHLQFSNPSGTTLRITDDGTSQATVKSASATTTVQTLASGSAQLPVFTDGGA---LYT 453 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G G++ + VNP ++P+ L + + + + + Sbjct: 454 GTITASGSQMTGLAGRLNVNPALLNDPTKLSTYSTSPQTAAGDSTRPDFLFAQLTSATFT 513 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 ++ A T+ Y + + + + L VV + + E +++T G Sbjct: 514 YSPKTGLGSAAQ-PFQGTVSGYLQQVVSQQGSASTLATQLSQGQSVVVSTLKEKFNSTAG 572 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ E+S LI+V+ +Y+ + ++ M+Q+LL+ Sbjct: 573 VNMDSEMSNLIQVQNTYSANAHIMSVVQSMMQSLLQA 609 >gi|27464952|gb|AAN63049.1| flagellar component FlgE [Vibrio vulnificus] Length = 434 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 120/481 (24%), Gaps = 60/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RS 57 + + + A + NI NA+ + N V Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLVTNAKTTPGGGVQANQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + S ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNE---LTRNGAFHLSKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D V ++ + + E + A+ Sbjct: 120 ANDEYLLGYQVDPLSGDVASY-------EPQPLNIPAEFGKPKQTSNVTVGVNLPARGAL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K A D D S I ++ + + Y T T Sbjct: 173 KDPQA--------FDFEDPDTYNRSTSSTIYDLMGQSYKLTTYYLKDQTQPNTWQTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + +L Sbjct: 225 TDSQGEKPLNIAGGDATNATGHIGHTVKFNNDGTLASL---------------------- 262 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + P A I Q I+ + + Q+ + + Sbjct: 263 --------NNGQPIISDPLGAGAVPIDMNGGDPTQTIAFDLNSSTQFAAPFELTKFDEDG 314 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + Y + N + + L + + W N S Sbjct: 315 ATTGFLTKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWNSTNNSG 372 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F +S +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 373 DKIWGESNKGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 Query: 478 G 478 Sbjct: 433 I 433 >gi|313650466|gb|EFS14873.1| flagellar hook-associated 1 domain protein [Shigella flexneri 2a str. 2457T] gi|332758242|gb|EGJ88565.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri 4343-70] gi|332759634|gb|EGJ89939.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri 2747-71] gi|332761428|gb|EGJ91712.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-671] gi|332767690|gb|EGJ97883.1| flagella basal body rod family protein [Shigella flexneri 2930-71] gi|333005757|gb|EGK25275.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-218] gi|333008286|gb|EGK27760.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-272] gi|333019422|gb|EGK38705.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-304] gi|333019776|gb|EGK39048.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-227] Length = 274 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDTFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMP 230 >gi|170683341|ref|YP_001744104.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300938641|ref|ZP_07153370.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|170521059|gb|ACB19237.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300456426|gb|EFK19919.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 401 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++S+ + G I Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|58039489|ref|YP_191453.1| flagellar hook-associated protein 1 FlgK [Gluconobacter oxydans 621H] gi|58001903|gb|AAW60797.1| Flagellar hook-associated protein 1 FlgK [Gluconobacter oxydans 621H] Length = 509 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 79/507 (15%), Positives = 162/507 (31%), Gaps = 28/507 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + + A + N A N+ NA Y++ + + R+ Sbjct: 1 MGLNSALSIATSGLNAVQNAMAVASNNVSNAGTSGYIKENANVQSTVAGNMGTGVRTAAT 60 Query: 61 NMFDK---------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + ++ L + AL+ SA + + + + L+ +L Sbjct: 61 TLATNEQVQKALYAQNADVAAYTATSNSLSNITALQGSTSATSGSSGTLSDELGNLQSAL 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S + TVI A Q+ NT A Q R A + +S++ L+ + Sbjct: 121 TSLTSTPDSASAQSTVISAASTFAQSVNTLASAYQTQRQTAQDTVVSSVSDINTDLTTIG 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ I + D +QR L +S + +S N DM + T++G TL Sbjct: 181 ALSTKIMNLKSIGQDTAALENQRYTALSSLSSELSVSWSESANGDMTISTANGVTLPTRD 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSS---------------NQGSAVPKGKIKALL 276 ++S S S+ S+ + + + G + A + Sbjct: 241 TSSTQGATVSSTWPLSTSSAQISVSSTYSATSADSSIPAITLNGRDVTADLTGGTLGANI 300 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPGLFIADGIKDLDNKLCQ 332 +RD+ +P Q QLD + + S++ + + Sbjct: 301 TLRDTTLPTMQAQLDSLTSTVATRLSDQGMPLFTSGTDGDVPGTSRTDLTPTGSVGFSQV 360 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + S ++ K + + S N Sbjct: 361 MSVSSTYSDDPSKLLDSSTSGTQTIQKVLSYGFGTTSDSAGTSQTAAPSTNLGLTGTLST 420 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 G N ++ A + SD+ SQ ++ + S T V++ E++ ++ Sbjct: 421 GYTGNQGIISLATSLTAKQAATASDASSGLALSQTTQTSLTSNLSGTSTVSVDTEMANIV 480 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +Y + K++ M LL + Sbjct: 481 TLQNAYAANAKVVSTVQTMFSALLSAI 507 >gi|254258855|ref|ZP_04949909.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1710a] gi|254217544|gb|EET06928.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1710a] Length = 419 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 54/413 (13%), Positives = 127/413 (30%), Gaps = 19/413 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + VT + L+A + + A I+ Sbjct: 60 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ Sbjct: 118 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + LL R + Sbjct: 237 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + A + S + ++ Sbjct: 357 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSST 409 >gi|239628984|ref|ZP_04672015.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519130|gb|EEQ58996.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 541 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 42/541 (7%), Positives = 114/541 (21%), Gaps = 74/541 (13%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------NVTVVTQRSENK 60 + I NI N + + T +Q Sbjct: 1 MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATSGDNNRGGTNASQVGYGA 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL-ESYSKNL 118 + L+ SA+ E + + L+ + Sbjct: 61 QLAGIDLNMERSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDYKSGNLVDA 120 Query: 119 SEDILGKTVIDNAEEVVQNFN-----TSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + D + + S Q ++ I++ + Sbjct: 121 NGYTVLGVTGDPLGKAASSDKIHLSIPSKNNAQSSSTQEINGVKYTITSQNATGDANVSI 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLL--QKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + D + + +IS+ +++ N M S Sbjct: 181 SFKLDETLPDGADVVVQPSEFNTSSIVVRISDKASFASLSDFNEKMNSAISRANNGTPHP 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-------GKIKALLQIRDSVVP 284 + + T + + + + G IK + V Sbjct: 241 AGNFTITAQPAQTGGFTGKELMGENFGIKPGEQIFNDTYKDSGIFGGIKPSSTSTEPVFT 300 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + + + K + +F ++ + + ET Sbjct: 301 ASGDVEYTIVKAGTSPDAWKLTATVKKDGKTRIFEGQISENSTSANSVWLKETGTPPSGE 360 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS--------FNKNFIFDPVAGINT 396 + + + N + + Sbjct: 361 EAGQYIEVKHPGYTAIEDYFKINPTADTTVAAGSITAATNSRDLGLGSKAFTLTDGSAGG 420 Query: 397 NVTLLEYARNSIGW-------------------------------------LEKNRSDSH 419 V+L + + S Sbjct: 421 TVSLSDAGVTILANGIIEANHPNLGKIQIGRIDLVTFDNPYGLEGVGNSYFKATGNSGDA 480 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + S V++ E + +I ++ + ++++I +D +L+ L+ Sbjct: 481 KACKAGEDGTGALKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDSILEELVNLK 540 Query: 480 K 480 + Sbjct: 541 R 541 >gi|300024588|ref|YP_003757199.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526409|gb|ADJ24878.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] Length = 417 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 45/480 (9%), Positives = 114/480 (23%), Gaps = 63/480 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + + + S + ++ NI N + Y V + + Sbjct: 1 MGLYGLMTTSISGMAVQSDRMGTVADNIANVNTTGYKEASAEFATLVAEGHVASYVPGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + H + + +P + S N + Sbjct: 61 STIARRAVTHQGDLSYTNSPTDLAVSGNGFFMVQSPSGTPYLTRAGSFISTNGELVNAAG 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + N + + K N + L V+ ++ Sbjct: 121 FTLLGYDLLNGGSSSVINSAAGLVPVGTANLGLKATPSTSGNFQVNLPSDAAVSTSLPSA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 A+ D ++ + + + Sbjct: 181 NAAGADFAG--------------------------------KTSIITYDNLGHKVTLDIY 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ T ++ D S+ G G Sbjct: 209 SAKTGPNQWEVSVYDNAGASAGGGFPYAAGS----------------------------- 239 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + ++ ++ + Q + + + Sbjct: 240 QLTTQALTFSGTTGKLTSPSPATLSVNVPNGATLNFNMGNTTQLAGAYIPVDASANGNGP 299 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + ++ + Y D + P+A + + L + N S Sbjct: 300 SAVDRLEISAQGIVTAVYADGSRVDAFKIPLANVASPDNLTAISGNVFAT--NKESGDLQ 357 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L + I V+L EL+ +++ ++SY ++K+ ++L L+ V+ Sbjct: 358 LGTANSGSLGKIVSGALEKSSVDLASELTTMVEAQRSYTANSKVFQTGTELLDVLVNLVR 417 >gi|300311352|ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae SmR1] gi|300074137|gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 47/483 (9%), Positives = 114/483 (23%), Gaps = 63/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55 F + + N A++ I N+ NA + + N V+ Sbjct: 2 GFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVSV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + ++ + F L ++ + + Y Sbjct: 62 PAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSP----MYGRNGQFQLDKSGYI 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S + + ++ D + + ++ + ++ Sbjct: 118 VNPSMNGAYLMGWAAGAQGGDPVP--------LQIDTSSIPATPTTTISTKVNLDSRLSV 169 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + L + + T + T++ + Sbjct: 170 PTTTPFNAADPTSYNSSTGVDLYDSLGNPYSMQTYYVKAAPTGTPPTTTWTVYAKIDNTT 229 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + QI + + N L Sbjct: 230 LNNGATPAVPVALGT----------------MTFDSTGTMTQINGAAISPTNNTLTISTA 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L I+ + + Q S L Sbjct: 274 QLATVAKA-----------------------GGVFAAPINISYSGSTQTGSAFVNLAQVQ 310 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ +I Y + KN + L N + + Sbjct: 311 NGMPPGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGNNL--YQASSA 368 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + S + + F + V+L EL +I ++ Y +++ I D +LQTL Sbjct: 369 AGSPLVGKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTL 428 Query: 476 LEG 478 + Sbjct: 429 VSL 431 >gi|146281771|ref|YP_001171924.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] gi|145569976|gb|ABP79082.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] Length = 438 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 42/476 (8%), Positives = 98/476 (20%), Gaps = 43/476 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSENKNM 62 FN A + N AS NI N + + Sbjct: 2 TFNVALSGLNAASTDLNVTGNNIANVGTTGFKASRAEFADLYATSMLGSGGNAVGSGVTT 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D I + + + E Y N Sbjct: 62 ADIAQQFTQGNITNTGNSLDLAISGNGYFMVSNNGSMLYTRAGAFKTDDEGYVINSEGYN 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L ++ ++V T+ + Sbjct: 122 LQGYGVNANGDIVSGVTTN------------------------------------LKVDS 145 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + L + + +T ++ S L++T + Sbjct: 146 SNQAPNATSSVVETLALNSNSSVPNNTPFDASDSSTYNWSTSVPLYDTQGNSHTMTQYFV 205 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 +++ + ++ S + + ++ + + Sbjct: 206 KDDSNQWTMYTLIDGRNPADPTSTEAYEVSIGFTASGALDLTSLASTDFDVNADGTLTLN 265 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P + I S Sbjct: 266 TWVPATVTDSTTSPVTWGSNGAAASASGISIDLRNISQ--TNTSFAVLSSPVQDGYTTGQ 323 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + Y + +K +A + L W + S + Sbjct: 324 LSGLSIDDTGMMFATYTNGQSKVIGQVVLANFTNSQGLASVGG--TAWAQTLASGEPAIG 381 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V+L +L LI +++Y + K + + QT++ Sbjct: 382 TPGSGTLGSLQSGALEDSNVDLTAQLVNLIVAQRNYQANAKTVETESAIAQTIINL 437 >gi|304392493|ref|ZP_07374433.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] gi|303295123|gb|EFL89483.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] Length = 423 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 44/485 (9%), Positives = 114/485 (23%), Gaps = 67/485 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57 MSL + + + S + +++ N+ N D Y + T + V + Sbjct: 1 MSLYGMMRTSVSGMQAQSNRLSTVADNVANVDTTGYKKYSTEFAQLVRPGASSGVDSSLG 60 Query: 58 ENKNMFD-KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYS 115 + D + + + + + S + + Sbjct: 61 SGGVLTDARQHISQQGNVSYTQSSTDIAINGNGFFVVEDSGGSNSLTRAGSFVADASGFL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + ++ + AD I ++ Sbjct: 121 VNAGG----------------------QRLKGVAADDQGNFPASIGSISALEPVSVDKQA 158 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 T + + S + T V N+ T ++ + Sbjct: 159 LAAVPTQNGRFVPNLPAN--------SVAVTGDTPVDNSAASTFAHKTSLTAYDNLGDAK 210 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + ++ T D S G + Sbjct: 211 VIDIYSTPTGPLTWEMTAFDASTASPTGGFPYASAALGT--------------------- 249 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + N + + + + Q ++ S + Sbjct: 250 ---------STLTFDPANGQLAAGSPDTLTFTVPNGRPVDLALAGTTQLAADYSIVTADL 300 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + G L Y D ++ P+A + + + +L Sbjct: 301 DGAPPASMEGIVVDGEGVLSARYSDGSLRDLYRIPLAAVVSPDRMDS--DTGTVFLANTE 358 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + V L +EL+ +I+ ++ Y ++K+ ++ + Sbjct: 359 SGDIRVDFAGTGSNGVLISGALEQSNVELADELTDMIRAQRGYTANSKVFQTGADLMDVI 418 Query: 476 LEGVK 480 + + Sbjct: 419 VNLRR 423 >gi|302874597|ref|YP_003843230.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690792|ref|ZP_07633238.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|302577454|gb|ADL51466.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 474 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 49/489 (10%), Positives = 115/489 (23%), Gaps = 26/489 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + I NI N + T S Sbjct: 1 MIKGMYSGITGLKANQTKLDVIGNNIANVGTTAFKSSSIRFTDSLYQNMTSASAPGYN-- 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +G +K + + + S L +++ + Sbjct: 59 -----------LGGTNPSVVGLGVKVSAVTTNMTQGNLQNTGSNLDCAIDGDGFFMVATG 107 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T + + ++ ++ + + +T Sbjct: 108 PLPTGNEFGVTLDTLSHSIINGNGMGVNYTRDGSFSLDADGNLLSNSGYRILGYPLQETG 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV-----YTSDGTTLFETVPRDINF 237 + D+ + + GI+ M + + TL T Sbjct: 168 LGISSVDYAANGNCNFVDANSPYGITAATDTLVPMKIPNKVAIAATRNTLDATGAPVGLA 227 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + T++ I I+ + + V +V P ++ Sbjct: 228 MTYTGSSTTTDKPDITINNADNTYVGDTDVTIKIFFNDKYQDTTVTPPMTTPRYVISING 287 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + D N + G D+ T N Sbjct: 288 SDAVAVADADTINIKMADGSTKTLSQLDIVLNNAPTDPATPADIQAAAKNSWQFTVNADG 347 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK---- 413 K N+ + D ++ V L + N Sbjct: 348 EKAIKN--FNIEKNGVIKGVLQDGRVTVLGQLAMSTFKNTVGLQKLGNNLYNVSANSGEP 405 Query: 414 --NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + ++ F V+L E+ + +I +++ ++K+I +D++ Sbjct: 406 IIRSSVGTEKDRSNEDAFGSCVNGVVEMSNVDLAEQFTEMIVASRAFQANSKIITTSDEI 465 Query: 472 LQTLLEGVK 480 LQ L++ + Sbjct: 466 LQELVQLKR 474 >gi|323495377|ref|ZP_08100454.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323310300|gb|EGA63487.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 434 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/484 (8%), Positives = 115/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 A + + A + NI NA+ + + V Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + + + ++Y Sbjct: 63 VAQ---QFHEGSSIYTNNPMDLRISGTGFFAVAKDRLSPTTNE---LTRNGAFHLNKDNY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ V ++ + + I + + Sbjct: 117 MVTANDEFLLGYQVNKDTGDVLSY---------------EPSPINIPKEFGKPKQTANIE 161 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + D D S I + + + Y T T Sbjct: 162 VGVNLPAGGELKDPALFDYTDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTY 221 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G + +L Sbjct: 222 YTVTDSAGEKPLNILGGDATAPTGHVGHTMKFNNDGTLASL------------------- 262 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 N + A+ ++ + Q +S + Q+ + + Sbjct: 263 -----------NNGQNIVSEALGTGANPVELNGADVNQTLSFGLQDATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 EDGATTGFLTKVDFDENGSVLGTYSNGENIILGRVSLVRVANEQGLDK--KGGTQWDSTQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F IS +++ +EL LI ++++ +++ + ++ Q Sbjct: 370 FSGDKIWGESNKGSFGTISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|126441590|ref|YP_001057329.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 668] gi|134283597|ref|ZP_01770296.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 305] gi|217425071|ref|ZP_03456567.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 576] gi|226199842|ref|ZP_03795393.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei Pakistan 9] gi|237810468|ref|YP_002894919.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei MSHR346] gi|238562529|ref|ZP_00440322.2| flagellar hook-associated protein FlgK [Burkholderia mallei GB8 horse 4] gi|251767452|ref|ZP_02267340.2| flagellar hook-associated protein 1 [Burkholderia mallei PRL-20] gi|254188065|ref|ZP_04894577.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei Pasteur 52237] gi|254201902|ref|ZP_04908266.1| flagellar hook-associated protein 1 [Burkholderia mallei FMH] gi|254207237|ref|ZP_04913588.1| flagellar hook-associated protein 1 [Burkholderia mallei JHU] gi|254295821|ref|ZP_04963278.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 406e] gi|126221083|gb|ABN84589.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 668] gi|134245006|gb|EBA45101.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 305] gi|147747796|gb|EDK54872.1| flagellar hook-associated protein 1 [Burkholderia mallei FMH] gi|147752779|gb|EDK59845.1| flagellar hook-associated protein 1 [Burkholderia mallei JHU] gi|157805698|gb|EDO82868.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 406e] gi|157935745|gb|EDO91415.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei Pasteur 52237] gi|217392091|gb|EEC32117.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 576] gi|225928193|gb|EEH24229.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei Pakistan 9] gi|237506435|gb|ACQ98753.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei MSHR346] gi|238522496|gb|EEP85940.1| flagellar hook-associated protein FlgK [Burkholderia mallei GB8 horse 4] gi|243062745|gb|EES44931.1| flagellar hook-associated protein 1 [Burkholderia mallei PRL-20] Length = 714 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 65/501 (12%), Positives = 146/501 (29%), Gaps = 50/501 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 48 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 106 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + VT + L+A + + A I+ Sbjct: 107 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 164 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ Sbjct: 165 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 224 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 225 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 283 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + LL R + Sbjct: 284 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 343 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334 Q QL +A + ++ + + PG + Sbjct: 344 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 403 Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 T Y L D + S + + + D Sbjct: 404 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 463 Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + T L ++ + + + +S Y G Sbjct: 464 TVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 519 Query: 446 EELSFLIKVEQSYNISNKLIM 466 +YN ++K + Sbjct: 520 -------TTTLAYNAASKTLS 533 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S V+ + + A + + L + + + + + + Sbjct: 390 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 449 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +L T +F + + + +G +++ + + Sbjct: 450 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 509 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 QL L + + K + + Sbjct: 510 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 569 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395 + + V ++ D N ++ + + + N Sbjct: 570 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 629 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + S + I+++ + GVN EE + L++ + Sbjct: 630 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 689 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 Q Y + K+I + + QT+L Sbjct: 690 QLYQANAKVIQTANSVFQTVLGL 712 >gi|90411005|ref|ZP_01219019.1| flagellar hook protein [Photobacterium profundum 3TCK] gi|90328218|gb|EAS44529.1| flagellar hook protein [Photobacterium profundum 3TCK] Length = 435 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/486 (8%), Positives = 116/486 (23%), Gaps = 66/486 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52 FN + + + + + NI NA+ + T + V Sbjct: 2 GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + ++ + + F A+ + + N + + Sbjct: 62 SVVAQ---QFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNNN---LTRNGAFHLNKD 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N L +D + V ++ A +V ++I Sbjct: 116 NQVVNSEGQFLLGYGVDQETDQVTSYEPQAMKVPDQFGQPRASTNIDIG----------- 164 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + +++ D D S + + + + Y + Sbjct: 165 ----VNLPASAEAKDATLFDFNDSNSYDKSTSVTMYDSLGQPYKLSTYYVKDNSAPNRWS 220 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + +N + G + + Sbjct: 221 VYYTGTDATGEKPINITNGGTTAANGHQGSTLDFNTDGSVAQINN--------------- 265 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + +I + D + + Sbjct: 266 -GQPIISEALGAGGAGLDLNGADEAQTLTMQFDSPTQYAAPFEIR--------------K 310 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ ++ Y + N + + L+ + W Sbjct: 311 FSENGATTGYLAKVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVS--KGGTQWAT 368 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + SQ F + +++ +EL LI ++++ +++ + +++ Sbjct: 369 GQDSGAAIWGEASQGAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRALEVDNQLQ 428 Query: 473 QTLLEG 478 QT+L+ Sbjct: 429 QTILQI 434 >gi|260767769|ref|ZP_05876704.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260617278|gb|EEX42462.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|315179399|gb|ADT86313.1| flagellar hook protein FlgE [Vibrio furnissii NCTC 11218] Length = 434 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/484 (8%), Positives = 112/484 (23%), Gaps = 66/484 (13%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 + + + A + NI NA+ + V Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + +Y Sbjct: 63 VAQ---QFHEGSSIYTNNPMDLRISGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNNY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ D + E + L Sbjct: 117 MVTSNDEYLLGY--------------------QVNPDTGDVLSYEPAPLNIPAEFGKPKQ 156 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + D D ++ ++ Y L + + Sbjct: 157 TSNIEVGVNLPANGDLKDPTLFDFTDPDTYNRSTSSTIYDSMGQAYKLTTYYLKDQTQPN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 E G +++ + D + N ++ Sbjct: 217 TWQTYYTVTDKEGEKPLNITGGDATTASGQVGHT------MKFNNDGTLASLNNGQPIVS 270 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L G + + + Q +S + Q+ + + Sbjct: 271 EPLGGGTNPVNLNGADVN-------------------QVLSFGLDAATQFAAPFELTKFD 311 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 312 EDGATTGFLTKIDFDENGSVLGTYSNGENITLGRVALVRVPNEQGLDK--KGGTQWDSTQ 369 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F I+ +++ +EL LI ++++ +++ + +++ Q Sbjct: 370 FSGDKIWGESNKGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQN 429 Query: 475 LLEG 478 +L+ Sbjct: 430 ILQI 433 >gi|283955071|ref|ZP_06372574.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 414] gi|283793438|gb|EFC32204.1| flagellar hook-associated protein FlgK, putative [Campylobacter jejuni subsp. jejuni 414] Length = 608 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 57/514 (11%), Positives = 149/514 (28%), Gaps = 63/514 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + + Q A+ NI NA+ Y R+ + T + Sbjct: 1 MGIFGTLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L S+ + + + S D N + + Sbjct: 61 AVESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKNLENYNKA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 ++ N +E+ T++ ++ + ++ N + + KI+ D +I+ ++ + + E+ Sbjct: 120 WNDFASNPNENATKITLVKASQTLTESINNTFTTLDKIQKKVDNDIKNTVNEINKIGEEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215 ++N I + A A++ D+RD L +S+++ +TI + Sbjct: 180 AIINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPRH 239 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + + + + + + G++ A Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKINGGQLGAQ 296 Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309 L +R D ++ + + LD A+ +I + + G Sbjct: 297 LDLRGRNYSKNEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + V + + N + ++ N + Sbjct: 357 DIPLVNYDRTIQPGSFDIIIYDDKGDKKLTKTITIDVNTTMNDIMSQINANTDDNNNKNS 416 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422 + D + IN + Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDI 476 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455 + N S +++ GV+ +++ +I+++ Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 74/222 (33%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + I + + + D + + G + Sbjct: 386 TKTITIDVNTTMNDIMSQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKS 445 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 I+D S + S+ + + + D+ N Sbjct: 446 GFKVAIEDKGTNFAGAFSIGGFFSGTDASDIKVKDSILNDPSTVRASSNGVDSGNDMANK 505 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + F G N+T+ EY R G + + +++ +++ ++ ++N + Y Sbjct: 506 IIQLQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNLSNETLYNSVYSEYQ 565 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + GVN EEL+ LI+ + SY + K++ ++ML TLL Sbjct: 566 SKSGVNTNEELAALIQYQSSYGAAAKIVSTVNQMLDTLLGLK 607 >gi|157146226|ref|YP_001453545.1| flagellar hook protein FlgE [Citrobacter koseri ATCC BAA-895] gi|157083431|gb|ABV13109.1| hypothetical protein CKO_01983 [Citrobacter koseri ATCC BAA-895] Length = 401 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q I+ ++ +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PGPITIPNTLMAAKATTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + ++ ++ N V T T + Sbjct: 160 SSDELPSKTPFDPSDADSYNKKGTVTVFDSQGNAHDVNVFFVKTQDNTWEVHTMDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T T + F + ++ S + + G I Sbjct: 220 ATPTLSTTMEFNENGMLVSGGSANIVTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPASFSLSFLNSMQQNTGANNIVATNQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGKLTNGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|297517866|ref|ZP_06936252.1| flagellar hook protein FlgE [Escherichia coli OP50] Length = 401 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMATKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|324007916|gb|EGB77135.1| flagellar hook protein FlgE [Escherichia coli MS 57-2] Length = 401 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNHWDVYTLDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++S+ + G I Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|238799107|ref|ZP_04642563.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] gi|238717054|gb|EEQ08914.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] Length = 420 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 109/476 (22%), Gaps = 61/476 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + + N+ Sbjct: 62 NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIFYARNGQFKLDADRNIVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L I + + T Sbjct: 116 LTGYPA-------------------------TGTPPTIQQGANPIPLSIPQDMISARATD 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + D I+ + + + T ++T+ Sbjct: 151 SGSMVANLTSTHD--------IVPATPAFDPDKPATYSFVNNMTTYDTLGNRHEINVFYV 202 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S + D S+ A ++ +Q + G+ S Sbjct: 203 KRTESSTTGNSWDVYTRDSSANPAQTAPLLRGSMQFDTN-----------------GALS 245 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 A Q S + + Sbjct: 246 SVTNGANPPSTTDFTLTIPMGIVNGATAGPFALSVAGTKQQNTGTDSIVSQNQTGYAAGE 305 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y +S + +A L N W E S + L Sbjct: 306 FTGFQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNV--WKETRASGNPMLG 363 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 364 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 419 >gi|27363705|ref|NP_759233.1| flagellar hook protein FlgE [Vibrio vulnificus CMCP6] gi|37679147|ref|NP_933756.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|320157109|ref|YP_004189488.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] gi|27359821|gb|AAO08760.1| Flagellar hook protein flgE [Vibrio vulnificus CMCP6] gi|37197889|dbj|BAC93727.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|319932421|gb|ADV87285.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] Length = 434 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 120/481 (24%), Gaps = 60/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N V Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + S ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNE---LTRNGAFHLSKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D V ++ + + E + + A+ Sbjct: 120 ANDEYLLGYQVDPLSGDVASY-------EPQPLNIPAEFGKPKQTSNVTVGVNLPASGAL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K A D D S I + + + Y T T Sbjct: 173 KDPQA--------FDFEDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + +L Sbjct: 225 TDSQGEKPLNIAGGDATNATGHIGHTVKFNNDGTLASL---------------------- 262 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + P A I Q I+ + + Q+ + + Sbjct: 263 --------NNGQPIISDPLGAGAVPIDMNGGDPTQTIAFDLNSSTQFAAPFELTKFDEDG 314 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + Y + N + + L + + W N S Sbjct: 315 ATTGFLTKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWNSTNNSG 372 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F +S +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 373 DKIWGESNKGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 Query: 478 G 478 Sbjct: 433 I 433 >gi|333004892|gb|EGK24412.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri VA-6] Length = 274 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDTFITNQLRAVQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMP 230 >gi|322435945|ref|YP_004218157.1| flagellar hook-associated protein FlgK [Acidobacterium sp. MP5ACTX9] gi|321163672|gb|ADW69377.1| flagellar hook-associated protein FlgK [Acidobacterium sp. MP5ACTX9] Length = 469 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 66/494 (13%), Positives = 149/494 (30%), Gaps = 51/494 (10%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-------- 53 SL ++++ ++ + N+ N + Y R+ + VT+ Sbjct: 3 SLSSLYDLSRGALQADQVALTTTANNVANQNTVGYTRQVVTFASGADRVTLSDGAIASAN 62 Query: 54 ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYI 104 T S + ++ + + + + E + + + I Sbjct: 63 APEATVSSARDRVLEQRVQQQTQLQAGTSAQATALSQLEAVFSISGSSATVGSTQIGTAI 122 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 SL + + N S+ + V+ A + Q FN A+++ + A + + ++ + Sbjct: 123 DGFFSSLTALTSNPSDSSTRQAVLTAAGTLAQAFNAGAQQISSVAAGINSGVASSVTAVN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + + +N I + DA DQR + ++S+ IG+ I +N + + T+ G Sbjct: 183 SLTATIAGLNAQI-QSQSPNTDAGALEDQRQTAIAQLSQYIGLDQISTESNGIALTTASG 241 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 TL ++ ++ + + G I L + + Sbjct: 242 ATLVSGTKSY--------DISSAVVGGSAKIYDSTGADITAGITGGSIGGQLAAQGGALT 293 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 LD +A + + + ++ N I Sbjct: 294 TASTALDALAYRIATAVNTQNEAGLNGSGSAAGAIFTV---------------------- 331 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 PS +V +A ++ T+ Sbjct: 332 ---PSSSAGAAGALVVSATSVNAIASAGSGEGVTGNTNALALAAIATGTDANGATIDGSF 388 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + S Q ++ + V+L EE + L + ++SY+ + KL Sbjct: 389 AALLSQVGSSSSSLQAQSTAQQATLTALTSQRDSLSAVSLDEEAANLSQYQRSYDAAAKL 448 Query: 465 IMFTDKMLQTLLEG 478 D + T L Sbjct: 449 FSIVDSVTVTALNL 462 >gi|253996319|ref|YP_003048383.1| flagellar hook protein FlgE [Methylotenera mobilis JLW8] gi|253982998|gb|ACT47856.1| flagellar basal body FlaE domain protein [Methylotenera mobilis JLW8] Length = 421 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 108/476 (22%), Gaps = 60/476 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---M 62 F + + N AS+Q I N+ NA+ + + N S+ + Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVSNANTVGFKQSRAEFADVFANSITGGGGSQIGIGTNL 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 I + + + + + + Sbjct: 62 ATVAQQFTQGNITATNNSLDIAINGNGFFRMSSGGAVTYTRNGQFQLDKQGFIVDSASKR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L D ++ A D +I +N + Sbjct: 122 LTGYAADANGNILSG------------AAVDLQINTADIQPVATTKIEGTINLDSRNNPM 169 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D T N+ + VY S G + + Sbjct: 170 PAAPVFSSTDP---------------TTYNNSTAVTVYDSLGNSHTLQNFFRKTAANVWD 214 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + PI G Q+ + + + Sbjct: 215 IYTTVDGAPIPASGAAT----------------------------AQMTFTGTGVSPTIT 246 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P G + + + Q+ S S Sbjct: 247 PTAPATGIPSVTFTPMNTATTPVANGAANVTTTIDYSKSTQFGSAFSINALSQDGFTSGR 306 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + N A ++ Y + +KN ++ L N W S Sbjct: 307 LSGFNTASDGTIVGRYSNGQSKNLGRVVLSSFTNPNGLQSLGGN--AWAVSASSGPALTG 364 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + S V+L EL +I ++ Y + + I D++LQTL+ Sbjct: 365 APGSGLLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTLVNL 420 >gi|209545589|ref|YP_002277818.1| flagellar hook-associated protein FlgK [Gluconacetobacter diazotrophicus PAl 5] gi|209533266|gb|ACI53203.1| flagellar hook-associated protein FlgK [Gluconacetobacter diazotrophicus PAl 5] Length = 503 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 76/508 (14%), Positives = 173/508 (34%), Gaps = 33/508 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M LL+ + A + N Q + N+ N+ YV + + V + Sbjct: 1 MDLLSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTT 60 Query: 61 NM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + +S L + ++ SAD + + ++ +L Sbjct: 61 QLSVNKALMAALYGQNAQVASLTATNNSLAAVSDIQGSTSADAGSTTTLADELGNVQSAL 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + + V A+ + + + R DA+ + +S++ L++L Sbjct: 121 TTLTSTPTNSASQSAVYSAAQSLTTTIQSLSSTYTAQRQDAENSVVSTVSSVNYDLTQLG 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ I AS D +QR ++ +S + ++ + DM+V T+DGT L Sbjct: 181 QLSQQIMSLRASGGSTADVENQRLQVMSSLSSELSVTFSETSTGDMIVRTADGTELPTRP 240 Query: 232 PR-------------------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + +SY ++N ++ ++ + + G + Sbjct: 241 DQIGENDSTVTLPTSTWPLSTSGSTITPSSYYQAGDTNSTISGIMLNGTDITAHLTGGTL 300 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 A + +RDS P Q QLD + L FS+ + + Sbjct: 301 GANITLRDSTYPTMQAQLDSFSSTLATRFSDAGLSLFTDGTGAVPATDPTAETPSGIVGL 360 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ + ++ +S F +++G + + + Sbjct: 361 SSVISVDTSAPLTTDGDTSTITAVLSTAFGTASTDVSGSLEAPSSGLGPEG-----NLST 415 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 G + L+ A + D+ D + V + S +N GVN+ +++S ++ Sbjct: 416 GYSGTQGLVALATSLTSAQGAVIGDATDDLTSATSVQTTLQTSVANVSGVNVDDQMSTVV 475 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +Y + K++ M LL+ ++ Sbjct: 476 ALQNAYAANAKVVTAVQTMFTALLDAIQ 503 >gi|148976394|ref|ZP_01813100.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145964217|gb|EDK29473.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 434 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 43/473 (9%), Positives = 120/473 (25%), Gaps = 44/473 (9%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67 A + + A + NI NA+ + + + Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFG---------------DVYSNSLF 47 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + G + Y+ N + + T Sbjct: 48 TNAKTTSGGGAQASQVAQQ--------------------FHEGSSIYTNNPMDLRVSGT- 86 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 + E+ ++ + + + + L + + Sbjct: 87 ----GFFAVAKDRMVPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAP 142 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 + K +E I + + N D+ + +T R + +S + Sbjct: 143 KPLDIPAEFGKPKQTENIEVGVNLPANGDLKDPAAFNFKDADTYNRATSSTVYDSMGQSY 202 Query: 248 ESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + ++ + + + L I Q + + Sbjct: 203 KLTTYYLKDQTQPNTWQTYYTMTDETGEKPLNITGGDATNAQGHVGHTMKFNNDGTLASL 262 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + P A+ I Q + + + Q+ + + + Sbjct: 263 NSGQPINSDPLGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTGFLTK 322 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + Y ++ Y + N + + L + + W N S + Sbjct: 323 IDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDK--KGGTQWDSTNDSGDKIWGESN 380 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 381 KGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433 >gi|323498420|ref|ZP_08103416.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] gi|323316493|gb|EGA69508.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] Length = 438 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 120/484 (24%), Gaps = 62/484 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54 A + + A + NI NA+ + V Sbjct: 3 YVALSGISAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAAK 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + F A+ + + ++Y Sbjct: 63 VAQ---QFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNE---LTRNGAFHLNKDNY 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 +++ L ++ V ++ + + I + + + Sbjct: 117 MVTANDEFLLGYQVNGDTGDVLSY---------------EPSPINIPKEFGKPKQTSNIE 161 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + D D S I + + + Y L + + Sbjct: 162 VGVNLPAGGELKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYY-----LKDQTQAN 216 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 E + G + G + ++ + N + Sbjct: 217 TWQTYYTVTDSAGEKPINIVGGDATTPT-------GHVGHTMKFNNDGTLASLNNGQNIV 269 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 +G DP A N + Q +S + Q+ + + Sbjct: 270 SGPLGGTGPDDPNAINLNG--------------ADVTQTLSFGLSDATQFAAPFELTKFD 315 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ Y + N + + L + + W Sbjct: 316 EDGATTGFLTKVDFDENGSVLGTYSNGENITLGRVAMVRVANEQGLDK--KGGTQWDSTQ 373 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ F I+ +++ +EL LI ++++ +++ + ++ Q Sbjct: 374 FSGDKIWGESNKGSFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQN 433 Query: 475 LLEG 478 +L+ Sbjct: 434 ILQI 437 >gi|254503336|ref|ZP_05115487.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] gi|222439407|gb|EEE46086.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] Length = 421 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 111/478 (23%), Gaps = 61/478 (12%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 + N S + ++ NI N+ Y R +T + S K Sbjct: 1 MRTGVSGMNAQSSKLGAVADNIANSSTTGYKRAETEFASQVLAQGGGSYNSGGVQAHTKY 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT----HYISKLRDSLESYSKNLSEDI 122 + ++ + + Y N + Sbjct: 61 AISDQGSMSFTTSKLDLAVDGNGFFIVSDSTGAGASQALTRAGSFVPDGQGYLVNTAGMY 120 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L I N N + + + + L + ++ + +A Sbjct: 121 LQGYPITNGNAPSVVANGLGGL---------EPVNITQNQLEATPTSTATLHANVDEDSA 171 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A+ + + + N + VY + T T ++ Sbjct: 172 IVAAANLPSANAATAEYSHKTSMVVYDNLGNEVTLDVYYTKTTDTPPTTDWEVTVYNAAD 231 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + P + S+ Q + + + Sbjct: 232 RDPATGGFPYGAANIGTSTIQFDTTTG-----------------------QRTGAVTAVN 268 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P G + + + + Sbjct: 269 ITVPNGGTYDIDLENSTYT-----------------------DAGFTVTNVDADGNAPSS 305 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 L + Y + + P+A + + L + N + S + Sbjct: 306 VEKVEFGEDGTLYSIYTNGDRRPIYKIPLADVPSPDKLDPVSGNI--YRPSIDSGDVRVG 363 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ V+L EL+ +I+ +++Y ++++ ++Q L+ V+ Sbjct: 364 FPGDGGLGELAVGALEGSNVDLANELTSMIESQRTYTANSQVFKAGSDLMQELVNLVR 421 >gi|71906391|ref|YP_283978.1| flagellar hook protein FlgE [Dechloromonas aromatica RCB] gi|71846012|gb|AAZ45508.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Dechloromonas aromatica RCB] Length = 442 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 51/483 (10%), Positives = 117/483 (24%), Gaps = 53/483 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQ---- 55 F + + N +S+ NI NA + T + V Sbjct: 2 AFQQGLSGLNTSSKALDVTSNNIANASTVGFKSASTHFADVYAASLAGGGASQVGIGVSA 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + S+++ F + + + Y Sbjct: 62 SAIAQQFTQGNITTTSNSLDIALNGNGFFRMTQ-------DGAVRYTRNGQFHLDSTGYI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N +++ L D ++V + + I + + ++ + Sbjct: 115 VNDNKENLTGYAADAQGKIVASTPSG-------IKVDTAPISPQATGATSDGVRFSLNLN 167 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + + D S + + + N + M +Y V + Sbjct: 168 STDKVPGTAWTSPTGTNVPDTSTYNYSNAVTVYDTLGNAHTMTMYFVKSAPTAAEVLANP 227 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + G L DS Sbjct: 228 TTTGAWDVHYQVDGTSEANVGGSP---------------LRMTFDSTGAYLAPTTPATLA 272 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 V + + N + QY S+ + Sbjct: 273 VNLNGVATNLSTPANVVTNSATSPLSFAMNFAGS------------TQYGSDFAIASKTQ 320 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + Y + +N +A L+ N ++E Sbjct: 321 DGYASGQLSSLTIGDNGVIQGVYSNGQTRNMAQIVLANFQNPNGLMSIGNN--DYIETAD 378 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + F + V+L EL +I +++Y + + I D+++QTL Sbjct: 379 SGQSMIGTPNTGTFGVLQSGAVEDSNVDLTAELVNMIVQQRNYQANAQSIKTQDQIMQTL 438 Query: 476 LEG 478 + Sbjct: 439 VNI 441 >gi|168699687|ref|ZP_02731964.1| probable flagellar hook-associated protein [Gemmata obscuriglobus UQM 2246] Length = 562 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 61/446 (13%), Positives = 134/446 (30%), Gaps = 23/446 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRS 57 + + + A + I +N+ NA Y R D + V + + Sbjct: 1 MTNSYAIGTSAIATAQKALDLIGQNVANATTPGYHRVDPQLVSRTTGPNVTGVDIGSVTR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + + G+ L E A + + +E + Sbjct: 61 YSLPAVRTAVLTGNGDQGRYTALLDTNRQIETALAT--GQGGVGDKLESFFNQVEELTAR 118 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +T++ A ++ N +A ++ ++R+D ++I + + + + +N I Sbjct: 119 PDSLASRRTILTAATDLSNQLNATAGDIDRLRSDLGRKIGATVDQVNTLATRIASLNTQI 178 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K A+D DQRDV + +S++I + + N + V + D + Sbjct: 179 LTKENRGLTANDLRDQRDVAIDDLSKLIDVKIVEVPNGQINVISGDSAVVVGEFANRFTV 238 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + I S+ G + +Q ++ +P + +LD +A L Sbjct: 239 SQNANDD---------IVITDTSAAATRTFRSGSLAGDVQSFNTDIPALRARLDTLAGQL 289 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I ++ S + L + + ++ + +V Sbjct: 290 IQKVNQVQATGLGSTPITSLSGTNQASSVTA----PLNAAGLPFSVQAGTLTVSVTNNNV 345 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S N + T+ TL A+ + + + Sbjct: 346 SPATRTNTAVAINPATQSLTDIATALSAVPGLTATVNATSNTLDIQAQAGFSF---DFAG 402 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVN 443 L V N + +GVN Sbjct: 403 RDTLPAGPGAVANTDTSGLLVALGVN 428 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 41/444 (9%), Positives = 115/444 (25%), Gaps = 6/444 (1%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS-FEALKEMMSADDH 95 RR +T + + + + + + + + Q L + +L + ++ Sbjct: 124 SRRTILTAATDLSNQLNATAGDIDRLRSDLGRKIGATVDQVNTLATRIASLNTQILTKEN 183 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + +++ SK + I+ + + + Sbjct: 184 RGLTANDLRDQRDVAIDDLSKLIDVKIVEVPNGQINVISGDSAVVVGEFANRFTVSQNAN 243 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ I++ + + D + D L ++ + + Sbjct: 244 DDIVITDTSAAATRTFRSGSLAGDVQSFNTDIPALRARLDTLAGQLIQKVN-QVQATGLG 302 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + GT +V +N + + V + + + Sbjct: 303 STPITSLSGTNQASSVTAPLNAAGLPFSVQAGTLTVSVTNNNVSPATRTNTAVAINPATQ 362 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + L + + + + + G + N G+ Sbjct: 363 SLTDIATALSAVPGLTATVNATSNTLDIQAQAGFSFDFAGRDTLPAGPGAVANTDTSGLL 422 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + VN + + + + + VA Sbjct: 423 VALGVNGLFVGSSAASIRVSPTISADPTLLAAGRTGEVGDGTNLERLGAVRDVQAVA--- 479 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + L + + DL ++ TVGV+ EEL L+ + Sbjct: 480 -TRTLTQDFADIAATLGSSINSFDDLQTTQTSALRELATQEQATVGVDTNEELLKLLAFQ 538 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 + ++K + + + L + Sbjct: 539 RMIQGASKYLSVVNTSMDALFNII 562 >gi|116626495|ref|YP_828651.1| hypothetical protein Acid_7458 [Candidatus Solibacter usitatus Ellin6076] gi|116229657|gb|ABJ88366.1| protein of unknown function DUF1078 domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 421 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 47/483 (9%), Positives = 115/483 (23%), Gaps = 67/483 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPENVTVVTQRS 57 + F+ A + + + + N+ N + + RD +T + Sbjct: 1 MFTSFSTALSALSATATAVDVVGNNLANLNTPGFKTNVVYFRDLVTQSLGAGLGETQVGF 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + LL + A + N+ + K Sbjct: 61 GTGRPLTIRQFTQGAIQSSTGLLDAAVQGDGFFVAKNAQGNTVYTRAGNFQVDDAGNLKT 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + + + + + + ++ V A Sbjct: 121 NTGESVQGW-------------------------TSLDSTTGVLDTNGAIGDIVVPVGAA 155 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K AS D + S+ + + L + Sbjct: 156 KQPIASTGFTLDLNLNSSAAAEDTSKFSDTIKVYD-------SLGESHILTVHFQKTDAS 208 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + S +V E G ++ G L P + + L Sbjct: 209 QWSYSVSVPGEDLSGGTAGTPTDIGASGSLTFGADGQL------TSPAAGSVIGLDITGL 262 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + G I + + Sbjct: 263 ASGAADMHLDWNPRTDNGGGRITQFGQPSSASASSQNGSAAAQLIR-------------- 308 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 LA ++ Y D +A + +L+ N + R+ Sbjct: 309 --------VGLADGGKMLAQYSDGQQVVVGQVAMASVRNPESLIAVGNN--NYQASARTA 358 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + I V++ +E + LI +++ Y ++++I D++ Q + Sbjct: 359 TPAIGLPNTGGRGDIVGGAIEASTVDIAKEFTNLIVLQRGYQANSRVITTVDELSQETIN 418 Query: 478 GVK 480 + Sbjct: 419 LKR 421 >gi|258592496|emb|CBE68805.1| putative Flagellar hook protein flgE [NC10 bacterium 'Dutch sediment'] Length = 412 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 43/477 (9%), Positives = 104/477 (21%), Gaps = 67/477 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + F+ A I NI NA+ Y + Sbjct: 2 STFSTAITGLKAYQTDLGVIGNNIANANTTGYKASRAQFSEL------------------ 43 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + ++ + D + + + + + Sbjct: 44 -----------LVQTIEGATPPSDSTGGIDPMQIGAGVIVGGILNIQTQGAIEPTGRSSD 92 Query: 125 KTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + + + V DA+ + + L+ + ++ + A+ Sbjct: 93 LAIQGEGFYVLSNGESQIYTRVGSFELDANGNLVDAGTGLKVQGID-GDIHIPLGSNEAA 151 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + + + + + + ++ T G +N Sbjct: 152 GTTEVELVGNLNASDADDPITLTENESTLETSFFIIDTLGGK-------HQVNVTFSVPG 204 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 + + + + + G+I + Sbjct: 205 SANTGLWDYAVSAASNDTGVFTGASAGQI-----------------------QFASGGNV 241 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 S I Q S + + S Sbjct: 242 LSITGPGSGGG----IFTFNPGNAAASAQEFSIDFDALTGFAALSSVSMKQQDGVPPGSL 297 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 ++ + Y + +A + LL A E S + Sbjct: 298 TSFTVSNDGMVNGIYSNGLVTEMDTLKLASFSNPAGLLRLANGQFA--ETPNSGVAQYGV 355 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EL LI ++ Y + ++I +++ QT L ++ Sbjct: 356 AGTGGRGTIVAGALEQSNVDLGTELVNLIIAQRGYEANAQVISVANQIQQTTLNLLR 412 >gi|302185576|ref|ZP_07262249.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae 642] Length = 686 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 53/417 (12%), Positives = 131/417 (31%), Gaps = 17/417 (4%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------NVTV 52 ++ + + N +S +I N N D Y R+ +TT S + T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGTGYIGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L ++ + + + +S ++ Sbjct: 62 SDVRRIYNSYLDTQLQTTTALSADAVAYSGQASKTDTLL--SDSATGIATQLSDFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N ++ + + A + FN+ A ++ + + ++ + + + + Sbjct: 120 GIATNATQSSDRSSFLTQANALSARFNSIASQLSSQNDNVNAQLANFTTQVNELTNTVAS 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I +A + LD R +++++E++G+ N N V + + + Sbjct: 180 LNKQITQASAGNGTPNTLLDSRSEAVRQLNELVGVKVSENNGNYDVYTGTGQALVSGSTA 239 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + + + ++ S V G I LL+ R V+ N+L Sbjct: 240 YKMSTAPSAADPLQYNVQIAY---GQTQTDVSSVVTGGSIGGLLRYRSDVLVPAANELGR 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A VL + + +S+ G + I D + I +T + + Sbjct: 297 TAMVLSDQVNSQMSQGIDSKGNFGSNLYSSINGADAITQRSIGKTTNSAGSGNLDVTIGD 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + +S + D ++ Sbjct: 357 TSKLTADDYEVTFNDASNFTVRRLPNGESVGTGSLADNPPKQFEGFSVSLNGNTLAA 413 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 44/444 (9%), Positives = 108/444 (24%), Gaps = 17/444 (3%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 Y + T + ++ ++ + + + + + S + Sbjct: 260 YGQTQTDVSSVVTGGSIGGLLRYRSDVLVPAANELGRTAMVLSDQVNSQMSQGIDSKGNF 319 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 +N + + S K + G + + + + Sbjct: 320 GSNLYSSINGADAITQRSIGKTTNSAGSGNLDVTIGDTSKLTADDYEVTFNDASNFTVRR 379 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + S L++ + + + + + + I + + Sbjct: 380 LPNGESVGTGSLADNPPKQFEGFSVSLNGNTLAAGDIFKVTPTRNGASGISVVLTDAKDI 439 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + +N+ + S V ++ V G + + Sbjct: 440 AAAAPLTATAGTSNSGTGGFTQPVLNTKSDIYNSTQTADLRNAVKNSTPMKVVMGAVSST 499 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 Q+ A + + G+ + I D Sbjct: 500 ---------GVQSYTLLNASGGAVLDQNGNAVGGSIIQGQSNKLKLSIGYTDTTTTPSSK 550 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + +P AG D N + + Sbjct: 551 TAFELEMTISGSPVANDTFSIGMTG--------AGSSDNRNALAVVGLQTAKTVGATNGS 602 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 +L + + + S + + V S + GV+L EE S LIK + Sbjct: 603 VGTSLSGSYADLVSVVGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIKYQ 662 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 Q Y S+++I + TL+ + Sbjct: 663 QYYTASSQIIKAAQTIFSTLINSL 686 >gi|162147480|ref|YP_001601941.1| flagellar hook-associated protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786057|emb|CAP55639.1| putative flagellar hook-associated protein [Gluconacetobacter diazotrophicus PAl 5] Length = 503 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 75/508 (14%), Positives = 172/508 (33%), Gaps = 33/508 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M LL+ + A + N Q + N+ N+ YV + + V + Sbjct: 1 MDLLSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTT 60 Query: 61 NM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + +S L + ++ SAD + + ++ +L Sbjct: 61 QLSVNKALMAALYGQNAQVASLTATNNSLAAVSDIQGSTSADAGSTTTLADELGNVQSAL 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + + V A+ + + + R DA+ + +S++ L+++ Sbjct: 121 TTLTSTPTNSASQSDVYSAAQSLTTTIQSLSSTYTAQRQDAENSVVSTVSSVNYDLTQIG 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ I AS D +QR ++ +S + ++ + DM+V T+DGT L Sbjct: 181 QLSQQIMSLQASGGSTADVENQRLQVMSSLSSELSVTFSETSTGDMIVRTADGTELPTRP 240 Query: 232 PR-------------------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + +SY ++N + ++ + + G + Sbjct: 241 DQIGENDSTVTLPTSTWPLSTSGSTITPSSYYQAGDTNSTISGITLNGTDITAHLTGGTL 300 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 A + +RDS P Q QLD + L FS+ + + Sbjct: 301 GANITLRDSTYPTMQAQLDSFSSTLATRFSDAGLSLFTDGTGAVPATDPTAETPSGIVGL 360 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ + ++ +S F +++G + + + Sbjct: 361 SSVISVDTSAPLTTDGDTSTITAVLSTAFGTASTDVSGSLEAPSSGLGPEG-----NLST 415 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 G + L+ A + D+ D + V + S +N GVN+ +++S ++ Sbjct: 416 GYSGTQGLVALATSLTSAQGAVIGDATDDLTSATSVQTTLQTSVANVSGVNVDDQMSTVV 475 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +Y + K++ M LL+ ++ Sbjct: 476 ALQNAYAANAKVVTAVQTMFTALLDAIQ 503 >gi|254182133|ref|ZP_04888730.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1655] gi|184212671|gb|EDU09714.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1655] Length = 714 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 65/501 (12%), Positives = 146/501 (29%), Gaps = 50/501 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 48 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 106 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + VT + L+A + + A I+ Sbjct: 107 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 164 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ Sbjct: 165 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 224 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 225 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 283 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + LL R + Sbjct: 284 NASYQLATVASPSDPSELTIVSKGVAGSAQPGATQYLPDVSLTGGALGGLLAFRSQTLDP 343 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334 Q QL +A + ++ + + PG + Sbjct: 344 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 403 Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 T Y L D + S + + + D Sbjct: 404 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 463 Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + T L ++ + + + +S Y G Sbjct: 464 TVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 519 Query: 446 EELSFLIKVEQSYNISNKLIM 466 +YN ++K + Sbjct: 520 -------TTTLAYNAASKTLS 533 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S V+ + + A + + L + + + + + + Sbjct: 390 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 449 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +L T +F + + + +G +++ + + Sbjct: 450 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 509 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 QL L + + K + + Sbjct: 510 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 569 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395 + + V ++ D N ++ + + + N Sbjct: 570 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 629 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + S + I+++ + GVN EE + L++ + Sbjct: 630 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 689 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 Q Y + K+I + + QT+L Sbjct: 690 QLYQANAKVIQTANSVFQTVLGL 712 >gi|218663527|ref|ZP_03519457.1| flagellar hook-associated protein FlgK [Rhizobium etli IE4771] Length = 291 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 149/284 (52%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N Q+I NN QQ + + NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y+S +++L++++ + S Sbjct: 61 TALLAQYLQSNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLSAFQEALQTFATSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + A+++ + NT++ VQ IRA+AD EI ++S L LS+ N+A+K Sbjct: 121 TTSAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA+ D LD+R+ LL++IS I+G++++VR+NNDM +Y SDGT LFETVPR + Sbjct: 181 TATGTDMSSALDEREKLLKQISSIVGVNSVVRDNNDMALYASDGTVLFETVPRTVTSAST 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 +Y +E+ P + ++ALLQ+RD Sbjct: 241 ATYVAGTEAMPSISTRCTRCPAKIDDERLRSLQALLQLRDESPD 284 >gi|254227983|ref|ZP_04921413.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262396035|ref|YP_003287888.1| flagellar hook protein FlgE [Vibrio sp. Ex25] gi|151939479|gb|EDN58307.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262339629|gb|ACY53423.1| flagellar hook protein FlgE [Vibrio sp. Ex25] Length = 398 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 48/474 (10%), Positives = 113/474 (23%), Gaps = 77/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S G R + D+ + +++ S L Sbjct: 59 NFDKDGSISGTGRAMDLAINGGGFFVTKDNMGQTLYTRSGVFATDKDNFVTANSGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + L +V N + + + Sbjct: 119 YSV---------------------------------DSNNNLMTGSVGNIQVSTSSLNAK 145 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D S I T ++ +S T +++++ + + T Sbjct: 146 ATDGL-DFVANFDASASAIDKTVTPFNPDDPNSFNSSYTTKVYDSLGNSHTVTQYFTKTA 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ + V K +L Sbjct: 205 SNSWEVNVQVDGGATPVTTVPVTFDKDGSL------------------------------ 234 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + + Q+ + + + Sbjct: 235 --------SSPTAPFNVSFPAAGANAMSVDINLKGSTQFGAKFGVSTNSPNGYTSGELAG 286 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + G + Y + ++ +A L + + W + S + + Sbjct: 287 VRVEGNGMVYATYTNGQSQLQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPITGVPG 344 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V+L EL L+ +++Y + K I +DK+ Q L V Sbjct: 345 SGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|86146155|ref|ZP_01064481.1| flagellar hook protein [Vibrio sp. MED222] gi|218708804|ref|YP_002416425.1| flagellar hook protein FlgE [Vibrio splendidus LGP32] gi|85836102|gb|EAQ54234.1| flagellar hook protein [Vibrio sp. MED222] gi|218321823|emb|CAV17792.1| Flagellar hook protein flgE [Vibrio splendidus LGP32] Length = 434 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 38/481 (7%), Positives = 117/481 (24%), Gaps = 60/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTPGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + + ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINE---LTRNGAFHLNKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L + ++ + + L Sbjct: 120 ANDEFLLGY--------------------DVDPNSGEVLSYAPKPLDIPAEFGKPKQTEN 159 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D D + ++ ++ Y L + + Sbjct: 160 IEVGVNLPANGDLKDPATFDFKDPDTYNRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQ 219 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 T E G +S + D + + ++ + Sbjct: 220 TYYTMSDETGEKPVNITGGDATNSAGHVGHT------MKFNNDGTLASLNSGQPILSDPI 273 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + Q ++ + + Q+ + R Sbjct: 274 GAGENAIDLNGADP-------------------TQVLNFGLDSSTQFAAPFELSRFDEDG 314 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + Y ++ Y + N + + L + + W N S Sbjct: 315 ATTGFLTKIDFDEYGSVLGSYSNGENVILGRVGLVRVPNEHGLDK--KGGTQWDSTNASG 372 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 373 DKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432 Query: 478 G 478 Sbjct: 433 I 433 >gi|254437430|ref|ZP_05050924.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198252876|gb|EDY77190.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 1436 Score = 113 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 52/416 (12%), Positives = 119/416 (28%), Gaps = 22/416 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + ++F ++ N Q +NI NA+ + Y RRD + Sbjct: 1 MASLFEIGRSAINAQRQALNVTGQNIVNANTEGYRRRDANLTEVFGVQSELNSMTSQVGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + L+ + +A + ++ Sbjct: 61 GVKLGVVNRAYDAFLTDTKRVSVGRFEASDAFVG--KLESLENAILPNDGDLGAVMTAFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + L S ++ ++ V FN +A + + +EIE+ + + R L Sbjct: 119 EQLRQVSAEPGDNAPRSAAVEMGHTVANAFNNTANLLGGLAEGTVEEIEIRLVEVNRNLE 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L+V+N ++ + + +D+RD +L +SE+I ++ + D V T Sbjct: 179 ALSVLNGQLRASNIGANPPNSLMDERDRILDNLSEVIPLNVSIGGRFDAEVRLGGSTAGP 238 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + G S + G ++ L+ Sbjct: 239 IILSGEDAKNLTVVASEQGSIMLRIGSGQ-----IVSQLEAGSLRGLVDAH-GTTQRAVM 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +LD +AR + + + + G + + + + Sbjct: 293 ELDALARDFTQKMNAQHSQGIDLDGQLGRELFSVVDFEVSARTVNQGDAEASIYLVPGRA 352 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 L D + + + + V G + ++ +A Sbjct: 353 DRLSDMQMTYDAKRGQWQLSNETGETLGTGRGRIELDGAVIDVTGTPEDGDVISFA 408 Score = 36.5 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 28/287 (9%), Positives = 68/287 (23%), Gaps = 17/287 (5%) Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 +S I + + G P + S + Sbjct: 1153 LSAEIDFDASTGLSIITLTSQQAGADAMVITPSSVATNLGFKLAAAELSVENGQLFARST 1212 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + G A + L M S + I + Sbjct: 1213 NGSAVDIKSGGTSAAGSYLHLTDIPDEELLVMMGLEGAKRLSAQYEIGVPVSAEDREPES 1272 Query: 321 DGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 ++ +D+ + + S + + +G Sbjct: 1273 FRVQMMDDNSGRVELFDNASGASIATRMSSGFARFNVSDQMVELSGFAESGDSFEFITGQ 1332 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK----------SQVVF 429 S + D + + ++ + ++ V Sbjct: 1333 RSAGDSRNMDMLLAFGQQGSDRRSFQDDFRTIAAGA------GATLEAARMTLSSNEAVR 1386 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + S GV+L EE + L+ +Q++ + +++ +M TL+ Sbjct: 1387 DAAVASEGELSGVSLDEEAAKLMSQQQAFQAAARILQTAREMFDTLI 1433 >gi|254508422|ref|ZP_05120542.1| flagellar hook protein [Vibrio parahaemolyticus 16] gi|219548632|gb|EED25637.1| flagellar hook protein [Vibrio parahaemolyticus 16] Length = 438 Score = 113 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 44/471 (9%), Positives = 116/471 (24%), Gaps = 36/471 (7%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67 A + + A + NI NA+ + + ++F Sbjct: 3 YVALSGISAAQLDLNTTSNNIANANTFGFKESRAEFGDV-----------YSNSLFTNAK 51 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + Q++ Q F + + + + + + +E Sbjct: 52 TTPGGGVQAQKVAQQFHEGSSVYTNNPMD--LRISGTGFFAVAKDRLTPTTNELTRNGAF 109 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 N + + N ++ D + E S + + + Sbjct: 110 HLNKDNYMVTANDEYLLGYQVNGDTGDVLSYEPSPINIPKEFGKPKQTSNIEVGVNLPAG 169 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D D ++ ++ Y L + + Sbjct: 170 GDLKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQANTWQTYYTVTDSAG 229 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 E + G + G + ++ + N + + +G DP Sbjct: 230 EKPVNILGGDATTPT-------GHVGHTMKFNNDGTLASLNSGNNIVSGPLGGTGPDDPN 282 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 A N D Q+ + + + + Sbjct: 283 AINLNGADVSQTLSFGLDSA--------------TQFAAPFELTKFDEDGATTGFLTKVD 328 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ Y + N + + L + + W S ++ Sbjct: 329 FDENGSVLGTYSNGENITLGRVAMVRVANEQGLDK--KGGTQWDSTQFSGDKIWGESNKG 386 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I+ +++ +EL LI ++++ +++ + ++ Q +L+ Sbjct: 387 SFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQNILQI 437 >gi|222823431|ref|YP_002575005.1| flagellar hook-associated protein FlgK [Campylobacter lari RM2100] gi|222538653|gb|ACM63754.1| flagellar hook-associated protein FlgK [Campylobacter lari RM2100] Length = 609 Score = 113 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 48/444 (10%), Positives = 124/444 (27%), Gaps = 24/444 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 M + + A Q + NI NA+ Y R+ + + Sbjct: 1 MGIFDSLYTGVSGIKAAEIQINTTGNNISNANAVFYTRQRAVQSSGMSIDRGGLHLGTGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + T + + L ++ L D D+ Sbjct: 61 QIDTIKRLHDEHSYYELKNATTQQNYTNYLGQILQEASQRF-PDMQGTGILQDYKNYYDA 119 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 +++ N S+ ++++A + QN + +++ K++ +++I + + E+ Sbjct: 120 WNNFASNPSDGASKIDLVNSANVLAQNIQKTLQDLDKMQQTVNEQIRQTVDEINNIGQEI 179 Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218 +N ++ + +A+ D+RD L ++S+++ ++ Sbjct: 180 ANINKQLENEEVLPTDNANQLRDRRDELELRLSKLVDAVAWKGKSSQDSTLESTMTDSGR 239 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 Y + K++ + + S + G++ A L + Sbjct: 240 YYDLSIQGFSIVNGSSFHPLKLDDNNQNGFYQIYYEVNDENRYDLTSKISGGQLGAQLDL 299 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 R + + ++ A K + L +T Sbjct: 300 RGRNYDGNHDTYSDGILQEYKDMLNTFTKTLITQTNNVYAQAATEKVNSDDLKGLKPDTS 359 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 ++ K + + + I D G N Sbjct: 360 LMSYDRNIQAGSFDLTVYNEKGDPVATRTIKIDVNTTIEDIIKQINADIDDNHDGKPGND 419 Query: 399 TLLEYARNSIGWLEKNRSDSHDLH 422 L +Y + + ++ S + ++ Sbjct: 420 -LNDYFKAFYHYDGQSDSGNFQIN 442 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 61/389 (15%), Positives = 118/389 (30%), Gaps = 5/389 (1%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 S D ++ T S++ +S + + + + R Sbjct: 225 SQDSTLESTMTDSGRYYDLSIQGFSIVNGSS--FHPLKLDDNNQNGFYQIYYEVNDENRY 282 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D +I + L + + + D L+ L + + Sbjct: 283 DLTSKISGGQLGAQLDLRGRNYDGNHDTYSDGILQEYKDMLNTFTKTLITQTNNVYAQAA 342 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 N + T + R+I + + +P+ + + N Sbjct: 343 TEKVNSDDLKGLKPDTSLMSYDRNIQAGSFDLTVYNEKGDPVATRTIKIDVNTTIEDIIK 402 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +I A + P N L++ + + D + + N Sbjct: 403 QINADIDDNHDGKPG--NDLNDYFKAFYHYDGQSDSGNFQINGLKKGYKISFKDKGTNFP 460 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + N Q S+ + + + + G D+ N N+ F Sbjct: 461 GALNVSSF-FNGQDASSINVNSSIRNDPNTLKASSNGVDGNNDIANAMLQLQNQKVNFYN 519 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 G ++TL Y R G + N + H + VFN Y + GVN EEL+ Sbjct: 520 KDGTVDSLTLDGYYRKFTGKIASNAESNSFAHATNMTVFNTAYAEYQSKSGVNTNEELAA 579 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 LI+ + SY + K++ D+M++TLL Sbjct: 580 LIQYQASYGAAAKIVTTVDQMIETLLGLK 608 >gi|89072315|ref|ZP_01158894.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89051847|gb|EAR57299.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 398 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 47/474 (9%), Positives = 104/474 (21%), Gaps = 77/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + + + Q +I NI N + T + + + Sbjct: 2 SFDIALSGLDATNIQLNTISNNIANVSTSGFKESRTEFSAVYNGMQAGGVEVA---AISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S G R L + D + + Sbjct: 59 NFDKTGSITGTGRPLDLAISGSGFFVTKDLTGQTLYTRSGVFGSDKD------------- 105 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 I ++ +++ + L V N I + Sbjct: 106 --------------------NNIVSNNGAKLQGYTVDANNNLQAGAVGNLKITTASLPAK 145 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + ++ + I+ N D + + Sbjct: 146 ATDELAFVANLDARSSVIDPAINPFDPNATDSFNSSYTSKVYDSLGNPHTVTQYFTKTNA 205 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + +DG + + Sbjct: 206 NEWQVNVVVDGAATPTQTQNV--------------------------------------- 226 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + I+ I Q+ +N + + Sbjct: 227 VFNTDGTLQSPTAPFAVNFIPAGADAANINIDIAGTTQFGANFGVSTNAPNGYTSGELAG 286 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L++ N W++ S + S Sbjct: 287 VRVEDNGMVFAAYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 344 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EL L+ +++Y + K I +DK+ Q+L V Sbjct: 345 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398 >gi|224825164|ref|ZP_03698270.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] gi|224602835|gb|EEG09012.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] Length = 419 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 45/483 (9%), Positives = 105/483 (21%), Gaps = 76/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS-------- 57 F + + AS+Q + N+ NA + R + + + Sbjct: 2 GFQQGLSGLAAASKQLEVVGNNVANASTNGFKRSRSEFADMYGSSLYGVSNAQAGIGVRT 61 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ +++ + + + F LK + + Y Sbjct: 62 AEVSQLFDQGNINSTGNNLDLAISGKGFFVLKS---PSAASSQDAYSRNGAFQVDANGYL 118 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L N + ++ + + Sbjct: 119 VNGDGYKLQGYAAQNG-------------------------------VIQYTATPVDLQF 147 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D + IS ++ + + +L T Sbjct: 148 QTSLISPTATSNVDLGVNLNSSAMVISPTPTVNPTDTSTYNSATSVKVYDSLGNTHDLSF 207 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 F K ++ ++ Sbjct: 208 YFVKGTPTATGTDWTVNLYVDGTAVTSPAGPQT--------------------------- 240 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + G N+ + + + + Q+ S+ Sbjct: 241 -LSFDTNGVLTSGGVLSNIQYTATTPNGSTTPMTIA---TVDLSKSTQFNSSFGVNSLSA 296 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + N+ + Y + +A L N + + Sbjct: 297 DGNAPGTLTSTNINNQGIIEATYSNGKTVAIGQVALANFTNVQGLQSMGGNLWKDVASST 356 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + I V+L EL +I ++ Y + + I D +LQTL Sbjct: 357 GGAKV-GAPMSADLGEIQSQALEQSNVDLNSELVDMIVAQRFYQANAQSIKTEDTILQTL 415 Query: 476 LEG 478 + Sbjct: 416 INL 418 >gi|17548572|ref|NP_521912.1| flagellar hook-associated protein FlgK [Ralstonia solanacearum GMI1000] gi|17430820|emb|CAD17502.1| probable flagellar hook-associated protein 1 [Ralstonia solanacearum GMI1000] Length = 642 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 58/407 (14%), Positives = 133/407 (32%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIGATGLRVADINLQVTGNNISNASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + +A L S + + +D N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQAASSAADQLNSLVSGLDTYLSD--SNSGLGSALTSFFNAADS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN + ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAISGQMASLSNQVNTQVQTQVNSVNSTTQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + ++ +Y +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGN 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S V+ + S + G + L+Q R + + QN L Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAVSADVNTQNKEGMDLNGKLGTDLFSTAGPSVAASSSNTGTGALTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 YDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASG 406 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 34/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGNQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVTIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + + Sbjct: 303 AAVSADVNTQNKEGMDLNGKLGTDLFSTAGPSVAASSSNTGTGALTATITNANAGQGYDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T ++ Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASGDSFLVRPTVNAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 S + + + + + + S + + L Sbjct: 423 TLTSDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGSPLASAVSLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GSVTVTVNGTATTYSGTAPYTQGATYSFNGIQMSLTGTPAANDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + N ++ N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQASQASANLTSQKALLASSTSQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y S K++ + + +LL Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639 >gi|260768782|ref|ZP_05877716.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260616812|gb|EEX41997.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 397 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 51/474 (10%), Positives = 110/474 (23%), Gaps = 78/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N ++Q+ +I NI N + T + + Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNGQQAGGVQVMG---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S R L D + + + L Sbjct: 59 NFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D + + + A Sbjct: 119 YTVDGNN-------------------------------NLLAGSMGPLKVDMSSLEAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + DF D + I ++ YT T ++++ + + T Sbjct: 148 NKVDFAANLDDRVDAIDTKENPFDPKNVDSYNNSYT---TPVYDSKGNEHTLTQYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + I S+ + L + Sbjct: 205 DNTWEIHSIVDGDTSTLTTTPATFDSKGNLTSATAYTI---------------------- 242 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I+ + QY S+ ++ + + Sbjct: 243 -----------------SASAAGADTLNITVDMTNLSQYGSDFVVSKNNPNGYTSGSFTD 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + + +A N L++ ++ W + S + Sbjct: 286 IRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQ--TSNTAWTQTYGSGQPVYGIPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F ++ V+L EL L+ +++Y + K I D+++ +L V Sbjct: 344 SGQFGELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397 >gi|239906284|ref|YP_002953024.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] gi|239796149|dbj|BAH75138.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] Length = 518 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 52/519 (10%), Positives = 125/519 (24%), Gaps = 45/519 (8%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENK 60 + + SQ A+ N+ N + Y + + + +Q Sbjct: 2 SSIWTGVSGLLTYSQGIATTGNNLANVNTVGYKSSRMLFADMISTMAGGTSDGSQIGTGV 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKE---MMSADDHYNNSPTHYISKLRDSLESYSKN 117 + L ++ E + D + + + Sbjct: 62 QVGSIALQTEVGSLQDASNSTDLAITGERGYFVVKDAANDKTYYTRAGDFNFDKNGNLMS 121 Query: 118 LSEDILGKTVIDNAEEVVQNFNT----------SAREVQKIRADADKEIELEISNLRRFL 167 + + +D + N + ++ D + + + Sbjct: 122 ATGCNVQGWAVDQDAILKAKRNNVILSEVPTTGTVTDITIKDFTIDPQATGTMEVVTNLD 181 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S+ +V + +D + V I I + VY S + Sbjct: 182 SQSSVGELDATDPYFTMFKNYDATNDTPVADSDYQATIKIYDSNGVAHTATVYYSKTSDN 241 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGV-----------------VVSSNQGSAVPKG 270 + ++ ++ GV + GS Sbjct: 242 SGKEYWEYMVTVPPEEDGSATTSGTTKAGVLMVGTLTFSAQGVLENQTAFTPNGSDPTSL 301 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLI---------GSFSEKDPIAGNSENVPGLFIAD 321 + S VP F + S D + I Sbjct: 302 SNWTQASLTSSGVPEFSATFKSASNGSALPSQTIAFKTGLSATDGSWNSGSAANAGAIGT 361 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + Y ++ K N+ + + + Sbjct: 362 NAALNIGYNPSSTLNAVYCTTNYATSSYTQTSSQDGYAKGEMTATNVDENGVIWGSFTNG 421 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 K +A L N + S + + VF+ I+ + + Sbjct: 422 QTKALYVLALADFTNPTDLYRNGNNLLSP--TTESGKATVGRANSGVFDSIAGNTLESSN 479 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E+ LI ++++ ++K++ + +++T L+ K Sbjct: 480 VDMASEMVNLIINQRAFQANSKVVTTAESLMETALQIKK 518 >gi|73539450|ref|YP_299817.1| flagellar hook protein FlgE [Ralstonia eutropha JMP134] gi|72122787|gb|AAZ64973.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Ralstonia eutropha JMP134] Length = 417 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 44/476 (9%), Positives = 104/476 (21%), Gaps = 63/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F + + N A+ I NI N++ Y + T S ++ Sbjct: 2 GFGQGVSGINAAAANLDVIGNNIANSNTVGYKASTAQFADVYAGTKIGLGTTVNSVVQSF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A + ++ S + + + + N Sbjct: 62 TQGNIQATNRSLDVAITNGSGF-----FRLVGTDGSVHFSRNGQFARTDDGRIVNAQGLQ 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + Q K Sbjct: 117 LTGFPPAGSGGGALPQPLVVSSAQMPPKPTGN------------------------IKVG 152 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D+ + T + S+ T+++++ Sbjct: 153 YNLDSRSSVPATAFSSTAADPTATPPTPAALPTSDMYSYSNSMTVYDSLGNSQQLVAYFG 212 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + D + ++ V G L + + + + + Sbjct: 213 KSSSGPTVTGGTDWTMNVTDAAGNVMGGSPITLAFDSNGKLTSTSPATITLTKTMTN--- 269 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q+ S+ + Sbjct: 270 -------------------------GASDLSMKLDLAGTTQFGSDNDVMSPSQDGYASGA 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + G + Y + + +A L N W S + Sbjct: 305 LLGFAIEGDGTVRASYSNEQTQVLGQVVLASFGNPEGLKPEGGN--TWAATGASGEAIVG 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L EL LI +++Y + K I ++++ +L+ Sbjct: 363 APG-GARGQLLSSAVEASNVDLSGELVNLIVAQRNYQANAKTIETQNQVMNSLMNM 417 >gi|239906013|ref|YP_002952752.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] gi|239795877|dbj|BAH74866.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] Length = 550 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 46/549 (8%), Positives = 110/549 (20%), Gaps = 72/549 (13%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQR 56 L + S + +I N+ N + + T V Sbjct: 4 GLGTSMWSGVSGLLANSTKMGTIGNNLANVNTYGFKGARTDFMDLMSANVGTAAGVKQIG 63 Query: 57 S------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-------NNSPTHY 103 + L S + F +K+ + + Sbjct: 64 RGVRVGTIVSDYSQGGLETTSENLDMAISGNGFFMVKQKSQVGSNGKMLNTGNTTTYYTR 123 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAE------------------------------- 132 + Y + +D Sbjct: 124 AGDFSFDSDGYLVTPQGLAVQGWKVDQDRIDAASASGTVLSQVPVTGEIQDIRLTQFTSP 183 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + T ++ + + A+ D Sbjct: 184 AKATSSVTMVTQLDSDTTTQNTRTAGTNYYYAMTEQWDGTASPAMPSTAYGYQSTLKVYD 243 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTS----------------DGTTLFETVPRDIN 236 + + + + T T + + Sbjct: 244 ENGSPHTLTVYYDKVVSEDGKDYWEYCVTCDPSEDGRVDSAGNPIAGTETAGLLMTGTMT 303 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 F+ S S + + + + + Sbjct: 304 FDSSGSLENMSAYTLQASNATGGPFDATQWAAASVKNGYPVFTANFKSVSDASFTDSPNA 363 Query: 297 LIGSFSEKDPIAGNSENVPGLFI-----ADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 L +F+ + + A +L + V Y ++ S + Sbjct: 364 LNIAFNVGISNTTGFQPGATGTLLSAAAAHDPDELVSFNPSTTKVNSTVTTSYATSSSTV 423 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + L ++ L + + + +A L N Sbjct: 424 FSSQNGYTSGLLTSVSVDSDGILTGTFSNGQTQKLWALALANFTNLQGLSRQGSNLYA-- 481 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + IS + T V+L E+ +I ++ + ++K I D M Sbjct: 482 ATLDSGQGTTNRANTGSVGSISGNTLETSNVDLATEMVSMILTQRGFEANSKTITTVDSM 541 Query: 472 LQTLLEGVK 480 L +++ + Sbjct: 542 LSEVIQLKR 550 >gi|283850813|ref|ZP_06368099.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. FW1012B] gi|283573736|gb|EFC21710.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. FW1012B] Length = 709 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 45/415 (10%), Positives = 129/415 (31%), Gaps = 16/415 (3%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSE 58 ++ + + NI N D + Y ++ +T V Sbjct: 10 IGRSALSTSQAALQVTGNNIANVDTEGYSKQTLITKDGSYVSGSAGQLGSGVVAQEVVRS 69 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + +A + + L + + + + ++ + +S L + N Sbjct: 70 HDQFIEAQYLQRGTARDRFQTLYAGLSSMQNL-VNESNSKGVNASLSNLFGDWGDLTGNT 128 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 +T++D+ ++ + + + ++++R+ AD+ I ++ + + ++ +N I Sbjct: 129 DSAATRQTMLDDTNTLLGLYRSMSSSIEQLRSQADQAIAADVETVNQLAKDIADLNKQIN 188 Query: 179 FKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD--I 235 + + D RD ++++S ++ ++ I ++ V T+ G T+ + + Sbjct: 189 STQVDGQNIPNGLYDARDKKIRELSALVDVNVIDNGRGNLTVNTNAGQTIVDGMVSYEFK 248 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + ++S+S D ++ ++K + F+ LD Sbjct: 249 YEQGKTVRQLSSDSITAGSDVQAYYEGSDTSEYTLRVKTSGGLGGVGGATFEASLDGGKT 308 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + + + T+ + P Sbjct: 309 WLTNDDGTVATFQADGDTGKVKVGDLDVWFGSTTDPTDATGTLEEGDTFTLVPKKALYWY 368 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDS--FNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + G F+F + TL A++ + Sbjct: 369 TTAGTPVNVTPQQYGDGTDNPSRLTGGSLTGTFLFRDEELGSYQKTLDAMAKSLV 423 Score = 99.7 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 F D L + ++ + +G Sbjct: 541 TGSSFRFGDDSSGALAALGVNTLLTGSTAGDVAVNSVVASDTNKVCVGHVGADGLLASGD 600 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 +K+ F + TL EY +G + + +++ + Sbjct: 601 NTTAKALAALEDKDISFYVTGQAPVSQTLGEYYSGLVGKIGSDTANASYQASYQSTLAAQ 660 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + GVNL EEL+ +IK + SY + KLI D++++T+L Sbjct: 661 LDAAQLSASGVNLDEELTNMIKFQHSYQAAAKLISTADQLMETVLGLK 708 >gi|225181603|ref|ZP_03735044.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167711|gb|EEG76521.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] Length = 408 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 39/479 (8%), Positives = 103/479 (21%), Gaps = 72/479 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + N + I NI N + + + Sbjct: 1 MQRSLFTGVSGLRNHQTKMDVIGNNIANVNTTAFKAGRVRFQD----------------I 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + S+ + + ++ S ++ Sbjct: 45 LSQNIRGASAPQD---GRGGINPAQVGLGMSVASIDTIHTPGSLQSTGR------PTDLA 95 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + F + L +N + Sbjct: 96 IQGSGFFVMSDGANEFYSRDGAFSLGSDGDLVNGANGFKPLGWQADAFGNINTNGPLQPL 155 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV-VYTSDGTTLFETVPRDINFEKMN 241 + H+ + L S + ++ I + VY S G + + Sbjct: 156 NIPLGHNVTTRATENLTFSSNLDSLAEIGTEHMAESLVYNSQGGSHLVEIIFTKTGSNTW 215 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + + + G Sbjct: 216 EWEASGITGNETVSGQGTIEFDE------------------------------------- 238 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + A I D+D ++ Q + + Sbjct: 239 -------FGNLLQATGDAAISITDIDGADDISMAVDFNNMSQVVGHSNAQVRYQDGFPAG 291 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + Y + +A + L++ A N + + S + Sbjct: 292 ELTEFTIGKTGVISGIYTNGLVVELGQIALASFDNPEGLMKAAGNM--YQVSSNSGQARV 349 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L E + +I + + ++++I +D +LQ ++ + Sbjct: 350 GGAGLEGRGVIETGTLEMSNVDLSYEFTEMITTSRGFQANSRVITTSDDLLQEVVNLKR 408 >gi|157371207|ref|YP_001479196.1| flagellar hook protein FlgE [Serratia proteamaculans 568] gi|157322971|gb|ABV42068.1| flagellar basal body FlaE domain protein [Serratia proteamaculans 568] Length = 407 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V +N Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S A+ F +++ + + N+ Sbjct: 62 KGGTTTGTSRALDVAISGNGFFRMQDQ------DGGVFYSRNGQFKLDENRNLTNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q N Sbjct: 116 LTGYPAAGTPPTIQQ----------------------------------GANPVPLSIPE 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +A V K + + + + T ++++ N Sbjct: 142 GMMNAKASTSGTMVANLKSTHKVPDNKTFDPAKQDSYNYVNTITAYDSLGNAHNINAYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ DG + G+ S + Sbjct: 202 KTDENKWQVYTQDGSAAPVDAGTM-----------------------------TFDTSGN 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q S S + Sbjct: 233 LTGTTSKQGTAAEFSMLVPMSAKDGAPAQNLSLSFAKSMQQSVSADSVSKVSQDGYGAGE 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y + + +A + L N W E S + Sbjct: 293 YTNFQINNDGTVVGIYSNQQTQVLGQIVMANFSNPEGLSSQGDNV--WQETGASGQPRVG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 351 IAGGGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 406 >gi|26247216|ref|NP_753256.1| flagellar hook protein FlgE [Escherichia coli CFT073] gi|227886566|ref|ZP_04004371.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300974380|ref|ZP_07172592.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|26107617|gb|AAN79816.1|AE016759_90 Flagellar hook protein flgE [Escherichia coli CFT073] gi|227836770|gb|EEJ47236.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300410623|gb|EFJ94161.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|307553078|gb|ADN45853.1| flagellar hook protein FlgE [Escherichia coli ABU 83972] gi|315291070|gb|EFU50433.1| flagellar hook protein FlgE [Escherichia coli MS 153-1] Length = 401 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNKWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++S+ + G I Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|299068738|emb|CBJ39977.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum CMR15] Length = 642 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 133/407 (32%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIGATGLRVADINLQVTGNNISNASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + +A L S + + +D N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQAASSAADQLNSLVSGLDTYMSD--SNSGLGSALTSFFNAADS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN + ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAISGQMASLSNQVNTQVQTQVNSVNSTTQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + ++ +Y +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGN 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S VS + S + G + L+Q R + + QN L Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAVSADVNTQNKEGMDLNGKLGSDLFSTAGPSVAASSSNTGTGALTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 YDYQVKYSGGSYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASG 406 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGNQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + + Sbjct: 303 AAVSADVNTQNKEGMDLNGKLGSDLFSTAGPSVAASSSNTGTGALTATITNANAGQGYDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T ++ Sbjct: 363 QVKYSGGSYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASGDSFLVRPTVNAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 S + + + + + + + + + L Sbjct: 423 TLTSDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSPVSLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GSVTVTANGTSTTYSGTAPYTQGATYSFNGIQMSLSGTPAANDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + N ++ N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQASQASANVTSQKALLASSTSQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y S K++ + + +LL Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639 >gi|74311638|ref|YP_310057.1| flagellar hook protein FlgE [Shigella sonnei Ss046] gi|157157539|ref|YP_001462310.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|191168462|ref|ZP_03030250.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|193064513|ref|ZP_03045593.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194438060|ref|ZP_03070153.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209918330|ref|YP_002292414.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218694610|ref|YP_002402277.1| flagellar hook protein FlgE [Escherichia coli 55989] gi|253773900|ref|YP_003036731.1| flagellar hook protein FlgE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161182|ref|YP_003044290.1| flagellar hook protein FlgE [Escherichia coli B str. REL606] gi|256018667|ref|ZP_05432532.1| flagellar hook protein FlgE [Shigella sp. D9] gi|260843316|ref|YP_003221094.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|260854559|ref|YP_003228450.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|260867439|ref|YP_003233841.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|293433366|ref|ZP_06661794.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300816778|ref|ZP_07096998.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300821143|ref|ZP_07101292.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300902467|ref|ZP_07120449.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300922602|ref|ZP_07138702.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300928372|ref|ZP_07143906.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|301304985|ref|ZP_07211087.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|301328554|ref|ZP_07221615.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|309798070|ref|ZP_07692445.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|331667476|ref|ZP_08368340.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331676867|ref|ZP_08377563.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332279736|ref|ZP_08392149.1| flagellar hook protein FlgE [Shigella sp. D9] gi|73855115|gb|AAZ87822.1| flagellar hook protein [Shigella sonnei Ss046] gi|157079569|gb|ABV19277.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|190901481|gb|EDV61242.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|192927765|gb|EDV82379.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194422996|gb|EDX38990.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209911589|dbj|BAG76663.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218351342|emb|CAU97048.1| flagellar hook protein [Escherichia coli 55989] gi|253324944|gb|ACT29546.1| flagellar basal body FlaE domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973083|gb|ACT38754.1| flagellar hook protein E [Escherichia coli B str. REL606] gi|253977297|gb|ACT42967.1| flagellar hook protein E [Escherichia coli BL21(DE3)] gi|257753208|dbj|BAI24710.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|257758463|dbj|BAI29960.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|257763795|dbj|BAI35290.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|291324185|gb|EFE63607.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300405499|gb|EFJ89037.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300421079|gb|EFK04390.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300463630|gb|EFK27123.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|300526442|gb|EFK47511.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300530552|gb|EFK51614.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300839703|gb|EFK67463.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|300844946|gb|EFK72706.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|308118353|gb|EFO55615.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|313848602|emb|CAQ31597.2| flagellar hook protein FlgE, subunit of Flagellum [Escherichia coli BL21(DE3)] gi|315253877|gb|EFU33845.1| flagellar hook protein FlgE [Escherichia coli MS 85-1] gi|323156883|gb|EFZ43017.1| flagellar hook protein flgE [Escherichia coli EPECa14] gi|323163758|gb|EFZ49577.1| flagellar hook protein flgE [Escherichia coli E128010] gi|323165584|gb|EFZ51371.1| flagellar hook protein flgE [Shigella sonnei 53G] gi|323175693|gb|EFZ61287.1| flagellar hook protein flgE [Escherichia coli 1180] gi|323185801|gb|EFZ71162.1| flagellar hook protein flgE [Escherichia coli 1357] gi|323947622|gb|EGB43626.1| fagellar hook-basal body protein [Escherichia coli H120] gi|323962675|gb|EGB58253.1| fagellar hook-basal body protein [Escherichia coli H489] gi|323973335|gb|EGB68524.1| fagellar hook-basal body protein [Escherichia coli TA007] gi|324017420|gb|EGB86639.1| flagellar hook protein FlgE [Escherichia coli MS 117-3] gi|324117353|gb|EGC11260.1| fagellar hook-basal body protein [Escherichia coli E1167] gi|331065061|gb|EGI36956.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331075556|gb|EGI46854.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332102088|gb|EGJ05434.1| flagellar hook protein FlgE [Shigella sp. D9] Length = 401 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|84388091|ref|ZP_00990987.1| flagellar hook protein [Vibrio splendidus 12B01] gi|84377158|gb|EAP94028.1| flagellar hook protein [Vibrio splendidus 12B01] Length = 434 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 40/481 (8%), Positives = 114/481 (23%), Gaps = 60/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57 A + + A + NI NA+ + Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + + ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINE---LTRNGAFHLNKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L + ++ + + L Sbjct: 120 ANDEFLLGY--------------------DVDPNSGEVLSYAPKPLDIPAEFGKPKQTEN 159 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D D Q ++ ++ Y L + + Sbjct: 160 IEVGVNLPANGDLKDPAAFNYQDADTYNRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQ 219 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 E G ++ + D + N + L Sbjct: 220 TYYTMSDENGEKPVNITGGDATNAQGHVGHT------MKFNNDGTLASLNNGQPINSEAL 273 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D + Q + + + Q+ + + Sbjct: 274 GAGANPIDLNGADP-------------------TQVLKFGLDSSTQFAAPFELTKFDEDG 314 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + Y ++ Y + N + + L + + W N S Sbjct: 315 ATTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDK--KGGTQWDSTNDSG 372 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 373 SKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432 Query: 478 G 478 Sbjct: 433 I 433 >gi|300918678|ref|ZP_07135259.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] gi|300414172|gb|EFJ97482.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] Length = 401 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ V N + T + Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFVSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|300722682|ref|YP_003711972.1| flagellar hook protein [Xenorhabdus nematophila ATCC 19061] gi|139522504|gb|ABO77656.1| FlgE [Xenorhabdus nematophila] gi|297629189|emb|CBJ89785.1| flagellar biosynthesis; hook protein [Xenorhabdus nematophila ATCC 19061] Length = 398 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 111/476 (23%), Gaps = 83/476 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V +N Sbjct: 2 SFSQAVSGLNAAASNLDVIGNNISNSATFGFKSSSAAFADVFSGSEVGLGVKVSGMVQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ N + + + N+ Sbjct: 62 KDGSTTTTNRKLDMAINQGGFFRMQD------SNGNILYSRNGQFKMDEDRNLINMQGMK 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L V V I D + + + Sbjct: 116 LTGYPA------VNGEIQIGGAVGPISIPTDMLDAKATTEITLKANLS------------ 157 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S I+ + S +F+++ + Sbjct: 158 -------------------SMETAITGEFDPDKKDTFNYSAPLQVFDSLGNQHDINVFFV 198 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ +D V + G+++ + +P F+ ++ + + Sbjct: 199 KTDNNKWTAHALDRSVAGAKP---QELGELEFNTSGQMKDIPPFKFEVPALNGSAAAQIN 255 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + G + Sbjct: 256 IELNGSKQQSIAQNSISPPKQDGYAAGHFTDYRVDDDGKIYGVYSNDQKQVLGQIVLANF 315 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N + LA D + E + + S + Sbjct: 316 ANPEGLAAQGDNVWA------------------------ESGASGSSVIGVAGSGN---- 347 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ V++ +EL +I +++Y + + I D++LQTL+ Sbjct: 348 ------LGNLISGALEASNVDMSQELVNMIVSQRNYQSNAQTIKTQDQILQTLVSM 397 >gi|163802603|ref|ZP_02196495.1| flagellar hook protein E [Vibrio sp. AND4] gi|159173686|gb|EDP58505.1| flagellar hook protein E [Vibrio sp. AND4] Length = 437 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/471 (8%), Positives = 114/471 (24%), Gaps = 37/471 (7%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67 + + ++A + NI NA+ + N Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNS------------LFSNA 50 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 Q + + ++ + + + E + +E Sbjct: 51 KTTPGGGAQASQVAQQFHEGSSIYTNNPMDLRISGT-GFFSVAKERLTPQQNEMTRNGAF 109 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 N + + N ++ D+ + E + + Sbjct: 110 HLNKDNYMVTANDEFLLGYQVDPDSGEVASYEPQAINIPAEFGKPKQTENIEVGVNLPAN 169 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 D D ++ ++ Y L + + Sbjct: 170 ADLKDPAQFDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQNQPNTWQTYYTVTDKDG 229 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 E +G S + IK + + Q + + D Sbjct: 230 EKPLNVANGDAASP---TGHVGHTIKFNNDGTLASLNSGQPITSVAMGDPATNTTPVDLN 286 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + E Q ++ + Q+ + + + + Sbjct: 287 GADPE-------------------QTLNFGLNSATQFAAPFELTKFDEDGATTGFLTKVD 327 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 +++ Y + N + + L + + W S + ++ Sbjct: 328 FDENGNVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQNSGAKVWGESNKG 385 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F IS +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 386 SFGTISNGTLEQSNIDMTQELVDLISAQRNFQANSRALEVDNQLQQNILQI 436 >gi|28897552|ref|NP_797157.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|153839685|ref|ZP_01992352.1| FlgE [Vibrio parahaemolyticus AQ3810] gi|260364611|ref|ZP_05777213.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|260878284|ref|ZP_05890639.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|260898114|ref|ZP_05906610.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|5361008|gb|AAD42915.1|U12817_9 polar flagellar FlgE homolog [Vibrio parahaemolyticus] gi|28805764|dbj|BAC59041.1| polar flagellar FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|149746795|gb|EDM57783.1| FlgE [Vibrio parahaemolyticus AQ3810] gi|308086119|gb|EFO35814.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|308090147|gb|EFO39842.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|308115102|gb|EFO52642.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|328473453|gb|EGF44301.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329] Length = 437 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + E+Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKENYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + +L + Sbjct: 225 TDKSGEKPLNVAGGDAQTPTGHIGHTMKFNNDGTLASLNSGN-------------PITSV 271 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + Q+ + + Sbjct: 272 ALGDPATNTTPLDMNGADPAQTLNFGLGAA--------------TQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|281178185|dbj|BAI54515.1| flagellar hook protein FlgE [Escherichia coli SE15] Length = 401 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++S+ + G I Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|269961599|ref|ZP_06175961.1| flagellar hook protein [Vibrio harveyi 1DA3] gi|269833640|gb|EEZ87737.1| flagellar hook protein [Vibrio harveyi 1DA3] Length = 437 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/481 (8%), Positives = 118/481 (24%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + ++A + NI NA+ + + N Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + +N + G + +L Q Sbjct: 225 TDKGGEKPLNVANGDAATPTGHVGHTMKFNNDGTLASLN--------NGQPITSVALGDP 276 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + D + Q ++ + Q+ + + Sbjct: 277 ATNANPVDLNGADP-------------------AQTLNFGLGSATQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|260901953|ref|ZP_05910348.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|308106765|gb|EFO44305.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] Length = 437 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + E+Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKENYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGMNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + +L + Sbjct: 225 TDKSGEKPLNVAGGDAQTPTGHIGHTMKFNNDGTLASLNSGN-------------PITSV 271 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + Q+ + + Sbjct: 272 ALGDPATNTTPLDMNGADPAQTLNFGLGAA--------------TQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|253998488|ref|YP_003050551.1| flagellar hook protein FlgE [Methylovorus sp. SIP3-4] gi|253985167|gb|ACT50024.1| flagellar basal body FlaE domain protein [Methylovorus sp. SIP3-4] Length = 402 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/473 (10%), Positives = 111/473 (23%), Gaps = 73/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I N+ NA+ + + N Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANA--------------- 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G + ++ + + N I+ + S + + Sbjct: 47 ---LNGSGTGSAGIGVKVADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRN 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + I + + + +++ L + + I + Sbjct: 104 GQFQLDKAGY------------IVTSSGEHLTGYVADSNGALQTGALTDIKINSADLAPQ 151 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + + ++ Sbjct: 152 ASTKVSDVFN-----------------------------------------LDSRSAVLP 170 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + +P +G L + + S + Sbjct: 171 IASFDPADPTTYTQVVPISVYDSQGNPHTLQSYLIKTAANTWDVRTTVDGGTTAVGSSQL 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N + Q I+ + Q+ S+ S + Sbjct: 231 TFDTNGLLTGTTTQTVTLAPPTVPAAQSITVDFASSTQFGSDYSLNSQVQDGYASGRLSS 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + A +I Y + K +A L N E + + + Sbjct: 291 FSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLAALGNNQFA--ETSDAGVPVIGKAG 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S + V+L EL +I ++ Y + + I D++LQTL+ Sbjct: 349 TGGLGVLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVNL 401 >gi|153834474|ref|ZP_01987141.1| FlgE [Vibrio harveyi HY01] gi|156973586|ref|YP_001444493.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|148869170|gb|EDL68202.1| FlgE [Vibrio harveyi HY01] gi|156525180|gb|ABU70266.1| hypothetical protein VIBHAR_01289 [Vibrio harveyi ATCC BAA-1116] Length = 437 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/481 (8%), Positives = 118/481 (24%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + ++A + NI NA+ + + N Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + ++Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKDNYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + +N + G + +L Q Sbjct: 225 TDKGGEKPLNVANGDAATPTGHVGHTMKFNNDGTLASLN--------NGQPITSVALGDP 276 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + D + Q ++ + Q+ + + Sbjct: 277 ATNTNPVDLNGADP-------------------AQTLNFGLGSATQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|242277990|ref|YP_002990119.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] gi|242120884|gb|ACS78580.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens DSM 2638] Length = 694 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 15/241 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L +F+ + NA + N+ N Y RR + S T+ Sbjct: 2 LGNIFSIGRGAMQNAQIGLSVHGNNVANLKTPGYRRRTVIQDESMSIREGRWSYGTGATI 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + R ++ + S + ++ E + + + + + + Sbjct: 62 DSIRRNLSQFLERGVLDKSPEFSRWNAEAGNLSMVEKFF-VESKDAGIAKSMGDMWAAWQ 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S + N ++ A++ ++ ++++ + ++ E+ + EL Sbjct: 121 SLADNPQLGANRVALVGAAQKFTAQLSSVVGDLRRQQDLITTHLKQEVGKANDAIKELAE 180 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + + LD+RD++L+ +S ++ IS + ++V +G L E Sbjct: 181 LNKQI----IANPNDNTLLDRRDIVLRGLSSLVDISVQEEPSGQVIVSLGEGQKLVEGAK 236 Query: 233 R 233 Sbjct: 237 A 237 Score = 93.2 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 45/394 (11%), Positives = 114/394 (28%), Gaps = 9/394 (2%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL-GKTVIDNAEEVVQNFNTSAREVQ 146 E + N++ T K S + + L + + + + Sbjct: 308 EKLFTAGGQNDAVTVGGVKFWFGKAGSSASAATTQLKDGDRFTLTPKSEVRWYKNTSTSE 367 Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 I A + E + + A + + + + ++ Sbjct: 368 SISPLAGNDGERRLKGGSIAGLLRARDEKIGSYIEKLNAFAKSIAWEVNRAHSQGAGLVN 427 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + + + + + ++ + + + V SS Sbjct: 428 HANTIGTYEVRDSTVPLAKSNLPYADKLTSGSFSMAFYSATTGKKVSVSAVDFSSIPPGK 487 Query: 267 VP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + +L +RD++ F + + S N +A Sbjct: 488 KNFDPAVHSLENVRDAINASFPGKAQAVITDGKLSIKGLGDNRFQFSNDTSGVLA--GLG 545 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 ++ + +I V+ ++PS + + + G K Sbjct: 546 INTFFEGHDAASIKVHESIEADPSKI-----GAAHVNGAGEVNKGDNATARAVAALTGKK 600 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + G +T + +Y + + + + +D+ SQ V + + + GV++ Sbjct: 601 NVNFKSGGTSTESSFNDYYSSLVATVGSDAADAKANLSISQTVLKGLVDKQESVGGVSID 660 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE+ + ++SY + +LI ++M TLL Sbjct: 661 EEMDIIASYQRSYRTAAQLIKTANEMFDTLLSLK 694 >gi|260774938|ref|ZP_05883839.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] gi|260609193|gb|EEX35351.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] Length = 434 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/471 (8%), Positives = 115/471 (24%), Gaps = 40/471 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67 A + + A + NI NA+ + + ++F Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDV-----------YSNSLFTHAK 51 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + ++ Q F + + + + + + +E Sbjct: 52 TTPGQGVQAAKVAQQFHEGSSIYTNNPMDLRVSGT--GFFAVAKDRLAPTTNELTRNGAF 109 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 N + + N ++ D + E S + + + Sbjct: 110 HLNKDNYMTTANDEFLLGYQVNKDTGDVLSYEPSPINIPKEFGKPKQTSNIDVGVNLPAG 169 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 + D ++ ++ Y L + + Sbjct: 170 GELKDPALFDFSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQNQANTWQTYYTVTDSAG 229 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 E + G + + D + N + ++ L + + Sbjct: 230 EKPINIVGGDATAPTGHVGHT------MRFNNDGTLASLNNGQNIVSEPLGTGATPVELN 283 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + +S + Q+ + + + + Sbjct: 284 GADVNQA-------------------LSFGLQDATQFAAPFELTKFDEDGATTGFLTKVD 324 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ Y + N + + L + + W S + ++ Sbjct: 325 FDENGSVLGTYSNGENIILGRVALVRVPNEQGLDK--KGGTQWDSTQFSGNKIWGESNKG 382 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F IS +++ +EL LI ++++ +++ + ++ Q +L+ Sbjct: 383 SFGTISSGVLEQANIDMTQELVDLISAQRNFQANSRSLEVHNQTQQNILQI 433 >gi|285018209|ref|YP_003375920.1| flagellar hook protein flge [Xanthomonas albilineans GPE PC73] gi|283473427|emb|CBA15932.1| probable flagellar hook protein flge [Xanthomonas albilineans] Length = 407 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 45/476 (9%), Positives = 111/476 (23%), Gaps = 74/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + A+ NI N + + R+ + Sbjct: 2 GFNTSLSGIKAANTDLNVTANNIANVNTTGFKSSRAEFADQFTVSGYGLARNAVGSGVRV 61 Query: 66 VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I + + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRNLDLAISGSGFFTLSNNGARVYSRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + ++ S + + Sbjct: 122 LQVFPPT-----ANGNGFAVGTLSDLQLQTTDSPPNPTSTVNLMFTLPGN---------- 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ ++T NN + ++ GTT+++++ Sbjct: 167 -------------------AQPPTVTTFDPNNANSYNSSTGGTTVYDSLGVSHIQTSYFV 207 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T T ++ V++ S + L D + Sbjct: 208 KTATPNQWQVYNYIDGVAAGGASTLQFSGSGMLTSPADGKI------------------- 248 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + + QY + Sbjct: 249 ----------------TLGSFTPSTGAGPLNLTLNVTGSTQYGETFALRGASQDGYASGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ + Y ++ +K ++ L N W E + S + Sbjct: 293 LNSISIDSSGVIFARYSNNADKALGQVAMSNFVNPQGLTSLGDN--AWAESSGSGAPRTG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + + V+L E+L +I ++++ ++++I D++ QT++ Sbjct: 351 VAGSSDFGSVQSGALESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTVINI 406 >gi|15801193|ref|NP_287210.1| flagellar hook protein FlgE [Escherichia coli O157:H7 EDL933] gi|15830708|ref|NP_309481.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|168747148|ref|ZP_02772170.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|168758631|ref|ZP_02783638.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|168767735|ref|ZP_02792742.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|168773921|ref|ZP_02798928.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|168783606|ref|ZP_02808613.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|168790011|ref|ZP_02815018.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|168802021|ref|ZP_02827028.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|195935466|ref|ZP_03080848.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024] gi|208809224|ref|ZP_03251561.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208814886|ref|ZP_03256065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208822570|ref|ZP_03262889.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209395987|ref|YP_002269922.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|254792458|ref|YP_003077295.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14359] gi|261227019|ref|ZP_05941300.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256253|ref|ZP_05948786.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK966] gi|291282096|ref|YP_003498914.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|12514614|gb|AAG55822.1|AE005317_11 flagellar biosynthesis, hook protein [Escherichia coli O157:H7 str. EDL933] gi|13360918|dbj|BAB34877.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|187770405|gb|EDU34249.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|188018069|gb|EDU56191.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|188999079|gb|EDU68065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|189354568|gb|EDU72987.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|189363151|gb|EDU81570.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|189370482|gb|EDU88898.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|189375951|gb|EDU94367.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|208729025|gb|EDZ78626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208731534|gb|EDZ80222.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208738055|gb|EDZ85738.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209157387|gb|ACI34820.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|209773378|gb|ACI85001.1| flagellar hook protein FlgE [Escherichia coli] gi|209773382|gb|ACI85003.1| flagellar hook protein FlgE [Escherichia coli] gi|209773384|gb|ACI85004.1| flagellar hook protein FlgE [Escherichia coli] gi|209773386|gb|ACI85005.1| flagellar hook protein FlgE [Escherichia coli] gi|254591858|gb|ACT71219.1| flagellar hook protein [Escherichia coli O157:H7 str. TW14359] gi|290761969|gb|ADD55930.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|320189759|gb|EFW64415.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC1212] gi|320637527|gb|EFX07327.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. G5101] gi|320643088|gb|EFX12289.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. 493-89] gi|320648546|gb|EFX17201.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. H 2687] gi|320653860|gb|EFX21934.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659340|gb|EFX26909.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. USDA 5905] gi|320664475|gb|EFX31626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. LSU-61] gi|326339298|gb|EGD63112.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1125] gi|326344741|gb|EGD68489.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1044] Length = 401 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q + + + K Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|209773380|gb|ACI85002.1| flagellar hook protein FlgE [Escherichia coli] Length = 401 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPA 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q + + + K Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|145297454|ref|YP_001140295.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142850226|gb|ABO88547.1| lateral flagellar hook protein LfgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 397 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 111/473 (23%), Gaps = 78/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ + +Q+ + I N+ NA + V + + Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAI-YGVEMNNVSQNFDR--NG 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + F LK+ + + +Y + L Sbjct: 59 DVMRTGKGLDLAISGSGFFVLKD------SNGQTSYTRAGMFQRDASNYLTTANGTRLQG 112 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++A E+ + A Sbjct: 113 YTTNDAGELQSGVV-------------------------------GDIQVKAGSLPAKAS 141 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D +F+ I+ + N S + +++++ + + T Sbjct: 142 DQLEFVANLKADASIITPPPPPAPAFDPNKSETFSYSQSSKVYDSLGTEHTVTQYFVKTG 201 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + V G+ + L ++ Sbjct: 202 ANAWDVHYTFNGAVVPPVGAKMNFDLNGKLDIAASTIPASL------------------- 242 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + QY S+ + R+ + Sbjct: 243 -----------------ALAPAGASPIALQLDMSRVSQYASDFNATRNQSNGYAAGDLTG 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + N +A L++ N+ W + S L Sbjct: 286 VKVDADGGVYATFTNGQNLLQGQVVMANFTNPNGLIQ--TNNTTWQQSFSSGQPVLGAPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + V+L EL L+ +++Y + K I DKM Q L Sbjct: 344 TGTMGSLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQVLFNS 396 >gi|76809667|ref|YP_331888.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1710b] gi|167892419|ref|ZP_02479821.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 7894] gi|167909135|ref|ZP_02496226.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 112] gi|76579120|gb|ABA48595.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1710b] Length = 667 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 65/501 (12%), Positives = 145/501 (28%), Gaps = 50/501 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + VT + L+A + + A I+ Sbjct: 60 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ Sbjct: 118 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ ++ G + LL R + Sbjct: 237 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 356 Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 T Y L D + S + + + D Sbjct: 357 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 416 Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + T L ++ + + +S Y G Sbjct: 417 TVLPTRGALDGFSLAIANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 472 Query: 446 EELSFLIKVEQSYNISNKLIM 466 +YN ++K + Sbjct: 473 -------TTTLAYNAASKTLS 486 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S V+ + + A + + L + + + + + + Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +L T +F + + + +G +++ + + Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLAIANGSAIAAASPVLAAGVATNSGTGVISQGS 462 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 QL L + + K + + Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395 + + V ++ D N ++ + + + N Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + S + I+++ + GVN EE + L++ + Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 Q Y + K+I + + QT+L Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665 >gi|291276682|ref|YP_003516454.1| putative flagellar hook-associated protein [Helicobacter mustelae 12198] gi|290963876|emb|CBG39712.1| putative flagellar hook-associated protein [Helicobacter mustelae 12198] Length = 606 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 54/431 (12%), Positives = 121/431 (28%), Gaps = 35/431 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 + + NI NA N+ Y R ++ V Sbjct: 3 GIFTSLGTSYTGLQANQLMVDVTGNNISNASNEFYSRERVLSAPEKSLLIGGNLVGRGVD 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + + + + A + D + + + ++ Sbjct: 63 IQAVQRIHNDFVFDRYSKAAEAYSFAETEFNHLEEASSFF-PDVDDLGIMSDLKEYFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + SKN S + + + A+ Q+ +V ++ A ++E+ + + + + Sbjct: 122 KDISKNPSYSAQKQVLAEKAKVFTQHLKDVRSKVVDLQKKASDDLEIRVKEINDIGAHIA 181 Query: 172 VVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217 +N IK A+ DQRD L K+ E++G + + D Sbjct: 182 KLNKEIKVMEDKEIYKRANTLRDQRDELEFKMRELLGGNVFKDKLASQGRLDRDSADFDE 241 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276 S G L + + ++ N +++ G + GKI AL+ Sbjct: 242 DYLFSIGRGLNIVDGGTFHPIVLQKDNNSAGLNRVYLQGYDFKPIEITDKLVSGKIGALI 301 Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + N LD AR I + + + + + Sbjct: 302 DLYNDGHNGTKVGKFQNYINMLDTFARSFIEASNAIYAQSATHRIESAPLELEDNVAFGD 361 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y ++ + + + + D +KN + Sbjct: 362 TNYNLKQGSFDLV-VYDADGNEVVKKSVQISDITTMRDVVNQINANTDDNGDHNSKNDVD 420 Query: 389 DPVAGINTNVT 399 D N + Sbjct: 421 DFFRAYYNNKS 431 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 77/261 (29%), Gaps = 10/261 (3%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + G T + + ++ + I + + + + Sbjct: 356 NVAFGDTNYNLKQGSFDLVVYDADGNEVVKKSVQISDITTMRDVVNQINANTDDNGDHNS 415 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + V F K + G+ +++ + I Sbjct: 416 KNDVDDFFRAYYNNKSKRFIIEPTKSVNGFSVAIRDHGTNFPGVFGINSFFEGDSAANIE 475 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 +N Y+ + + +R + + G ++ N + F + Sbjct: 476 LNYAYQKDATTIRTW----------MAPVTGNFEIANMMQQMQYDDIEFYDNKFDIKKMK 525 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L E+ L + + + + + + + V++ EE+ LIK + Y+ Sbjct: 526 LSEFYEFIATKLATDTQSAQTTMNTKKALLESAKKEHLSISQVSVDEEMVNLIKFQSGYS 585 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + K+I DKM+ TLL + Sbjct: 586 ANAKVITAIDKMIDTLLSIKQ 606 >gi|115522799|ref|YP_779710.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisA53] gi|115516746|gb|ABJ04730.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris BisA53] Length = 589 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 77/428 (17%), Positives = 149/428 (34%), Gaps = 16/428 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + A + Q + NI NAD Y + T +V Sbjct: 1 MSLDIARSIAVSSLMVTQVQISVTSSNISNADTTGYTVKTASQTSEVTSGVGTGTSVTGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA----DDHYNNSPTHYISKLRDSL 111 S + K L S +G S + + DD S + I+ ++ Sbjct: 61 TSNVDKLLMKSLVQAISGLGAADSTNSMLERLQALYGSTSDDDGSGTSLANSIAAFETAI 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S + L + + + ++ +Q +R+DAD+ I + ++ L+ + Sbjct: 121 ASLAATPGSASLQANAVSALDSLASQLRETSSGIQDLRSDADQSIASAVDDVNEQLNAIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N IK AS D DQR+ LQ+I+ I +S + ++ DM +YTS G L ++ Sbjct: 181 SLNAQIKQAAASNQPTGDLEDQRNTALQEIASRINVSYFISSSGDMQIYTSSGQALLDSS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVV----VSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++++ ++ ++ + G ++ S + G + AL+ +RD+ +P Q Sbjct: 241 VHELSYTTASTVAASTTYSTTPPSGFSGILVNGTDITSQISSGSVGALITLRDTTLPAAQ 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENV---PGLFIADGIKDLDNKLCQGISETICVNPQY 344 QLD++A L S + + + G L ++ T Sbjct: 301 AQLDQLATTLADSLNAVSNLGTSLPPPQTLTGTTAVTSSTALSATGSVRVAVTDQSGALA 360 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 L +V + + + + V+ N ++ Sbjct: 361 SYADLDLASYTTVGALVTAINGISGLSASIDSSGHVVIAASSSSNGVSIGNMTASVGSDG 420 Query: 405 RNSIGWLE 412 + WL Sbjct: 421 ASLSDWLG 428 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 93/297 (31%), Gaps = 5/297 (1%) Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 Q D L +++ + + + + + T + + + T Sbjct: 294 TTLPAAQAQLDQLATTLADSLNAVSNLGTSLPPPQTLTGTTAVTSSTALSATGSVRVAVT 353 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 S + + D + S A+ + + + Sbjct: 354 DQSGALASYADLDLASYTTVGALVTAINGISGLSASIDSSGHVVIAASSSSNGVSIGNMT 413 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + ++ + + +S I +P S S + Sbjct: 414 ASVGSDGASLSDWLGLNDLVTATGASDFKLSAAILADPSKLQTSSL----DSAATLTTGG 469 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHM 423 +G +++ + + F V G+ + +L +YA I + S + D + Sbjct: 470 TVLSSGSATIVDKLSSALTGSSSFAAVGGLGSTTGSLADYASALIAKVAAQASAAGDAYT 529 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q + ++ + ++ GVNL EE + L ++ Y +++LI + M L+ V+ Sbjct: 530 AKQTTRSTLASAMASQSGVNLDEETAKLSTLQNQYAAASQLIQAVNAMFDALISAVQ 586 >gi|149201615|ref|ZP_01878589.1| FlgK flagellar hook-associated protein 1 [Roseovarius sp. TM1035] gi|149144663|gb|EDM32692.1| FlgK flagellar hook-associated protein 1 [Roseovarius sp. TM1035] Length = 1335 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 46/395 (11%), Positives = 100/395 (25%), Gaps = 10/395 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENK 60 ++ + + + NI N D Y RRD + V VV R Sbjct: 1 MVDLMDIGRGGVLAYRTALGVTGENIANVDTAGYRRRDAVMQEVGVGGGVDVVDIRRAFD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S +G S E + D+L+ S+ + Sbjct: 61 GLVAARSRDAQSTLGAAETHLSHVQALEDRLL--PGEGGLPDLLDGFFDALDGLSQVPED 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + V+ + A + + + +E + LS L V + + Sbjct: 119 QGLRQAVLSAGTALAGGVADLAEGIDVLTRNVREETAQTVERANTVLSGLAEVQEQLAQV 178 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + + LDQRD LL ++E++ I + + V + + Sbjct: 179 T-DERARNPLLDQRDRLLVNLAELVAIDVEMDDAGRATVRLG-----ADGSGPMVLERGR 232 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + + + + +G + L + + LD A + Sbjct: 233 AGRIEVGTAGRYTVTSADTKAVEVQTTLRGGMLGGLANAAGAMAQAASDLDLWASRMAEE 292 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + G + + V Sbjct: 293 INAVHAQGLTPTGGRGGALFSVSGWEATPGALMRGTGAASVTITDATVMPAGPLTLVQDA 352 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + ++ + + + ++G+ Sbjct: 353 PSGLWQARDAAGQVLATGEQTLSLPGLRIEMSGVP 387 >gi|149188066|ref|ZP_01866361.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148838054|gb|EDL54996.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 432 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 62/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGAQPSK 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + + ++ + + F A+ + + +SY Sbjct: 63 IAQQFHEGSSISTNNPMDLRISGTGFFAVSKDRLVPQQNE---LTRNGAFHLNKDSYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L ++ V ++ + + I + + + Sbjct: 120 SNDEFLLGYEVNKDTNEVVSY---------------EPRPINIPPEFGKPKQTANIEIGV 164 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 D D S I + + M Y T T Sbjct: 165 NLPANGDLKDPALFDFTDPETYNRSTSSTIYDSMGQSYKMTTYYVKDQTQQNTWQSYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + G + +L + V Sbjct: 225 TDGQGEKPVNIAGGDATTPTGHVGHTMRFNNDGTLASLNNGQPIVTTDL----------- 273 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + D Q+ + + Sbjct: 274 -------GANGIDMNGADPAQTLSFSLDSA--------------TQFAAPFELTKFQEDG 312 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + +++ Y + N + + L + + W S Sbjct: 313 ATTGFLTKVDFDEQGNVLGTYSNGENVTLGRVAMVRVANEQGLDK--KGGTQWDSTTASG 370 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 371 AKIWGESNKGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430 Query: 478 G 478 Sbjct: 431 I 431 >gi|78219159|gb|ABB38508.1| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 527 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 49/534 (9%), Positives = 108/534 (20%), Gaps = 81/534 (15%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQRSENKNMFDKVLHA 69 + NI N + + + + V + + Sbjct: 1 MNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQVGRGVGIGTIYGDFSQGSFET 60 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + A + F A+ + + R E Y + +L I+ Sbjct: 61 TTEATDLAIGGRGFFAV-----SPKGEETAYYTRAGNFRFDKEGYLVDPHGYVLQGWQIE 115 Query: 130 -----------------------------NAEEVVQNFNTSAREVQKIRADADKEIELEI 160 ++ D + Sbjct: 116 TPRPSLATSTAGSVSSTSKIKGAGVPKDIQLPGFTAEPKHTSNVTIISNLDDASGGDNST 175 Query: 161 SNLRRF--------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVL--------- 197 + LSE + AH+ D + Sbjct: 176 NAANPMFALFNSWDGTAEPPLSENSFAYQTTIKVYDEGGTAHNLTIYYDQVASDTISGEG 235 Query: 198 --LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 + I+ + + + + + F+ S P Sbjct: 236 SGQKHWEYIVTMDPADEQRSINGIDFKGTPAAGMLMAGTLTFDSSGQLIDQSAFTPGSSA 295 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDS---------VVPIFQNQLDEMARVLIGSFSEKDP 306 + + V P L DP Sbjct: 296 TGSMKDLSNWNPTTFSTNGYPMFVANFSGISNASYVTPNPDPAAQPYIMELNLGLKNSDP 355 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 S V + L + + S Sbjct: 356 STWASAGVSNASLVGTNVANLPSLGNQAERQSSATTSFSGSSSTPTRYQDGYTFGFLQNV 415 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L Y + + + + L N E N S + Sbjct: 416 TVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGNLFS--ESNASGLAAPGPANA 473 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + V+L +E +I ++ + ++K+I TD ML+ +++ + Sbjct: 474 NGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVITTTDTMLEVVIQMKR 527 >gi|307721502|ref|YP_003892642.1| flagellar hook-associated protein FlgK [Sulfurimonas autotrophica DSM 16294] gi|306979595|gb|ADN09630.1| flagellar hook-associated protein FlgK [Sulfurimonas autotrophica DSM 16294] Length = 626 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 44/412 (10%), Positives = 122/412 (29%), Gaps = 16/412 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 S+ + + + A + NI NA+N+ Y R+ +T+ V Sbjct: 3 SIFNTLSIGYSGLSTAQVGINTTGHNIANAENEGYTRQRVVTSAANPLITSAGDVGNGVE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + N ++ SS + + +++ + Sbjct: 63 VQDIKRVFDNFVFDRYNSISSDKEYSDFERQTLEELSTYF-PEVDGVGIKADLAEYYNMW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++++ N D + + E + ++ + +V ++ + ++ I+ + +L Sbjct: 122 QTFADNPDNDSIKVALAKQTETLTEHITQTQNQVLNLQMQVNDQLSANITEVNSLAQQLA 181 Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N +I + A+D D+R+++ + +S +IG + S+ T Sbjct: 182 DLNISIDTAESGGGYSANDLRDKRNIIEKSLSRLIGAEVNQGQLESNIQIDSNSNT---R 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + +P+ I+ + + L+ + + + + Sbjct: 239 TGSYTLSVNGFNLVDGNTFHPLHIEKGTNPYGFYELSYERQDGTLIPLEEKINGGKIGAI 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + I + S V +++ N + Sbjct: 299 FNLRGGAIDTTSGMPTDGVLQNVVADFDAFAKGL-IESTNNLYAKSARSKMESNNINLNP 357 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 S S ++ Y N ++G++ + ++ Sbjct: 358 ASSLVSSSLNINPGSFDMIVYDIDGNEVAKRTIDINAATSMSGVSGSNSIQG 409 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 43/445 (9%), Positives = 119/445 (26%), Gaps = 8/445 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 T S + R + + + + + Q +L + + + Y S Sbjct: 186 SIDTAESGGGYSANDLRDKRNIIEKSLSRLIGAEVNQGQLESNIQIDSNSNTRTGSYTLS 245 Query: 100 PTH----YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + N + + + ++ I Sbjct: 246 VNGFNLVDGNTFHPLHIEKGTNPYGFYELSYERQDGTLIPLEEKINGGKIGAIFNLRGGA 305 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 I+ + + V + F ++ + + + I ++ Sbjct: 306 IDTTSGMPTDGVLQNVVADFD-AFAKGLIESTNNLYAKSARSKMESNNINLNPASSLVSS 364 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + + + + ++ + + + + + A Sbjct: 365 SLNINPGSFDMIVYDIDGNEVAKRTIDINAATSMSGVSGSNSIQGQIIANKDDNSDANAN 424 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 I D + + ++ + + + V L + G+ Sbjct: 425 NDIDDYINFNYTPSATGDTKLELSMDTLAESQGYTFAIVDNLLDGKFASGTNFAGAIGLG 484 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + AG + +++ F V+ Sbjct: 485 SFFEGTNAR--DIKLNSQYSNNPTGLHAGYSSNAGDNRVALDMVQQQFESYKF-KVSNEE 541 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + T + ++ + + + + FN Y++ V++ EE++ LIK + Sbjct: 542 YDATTYGMFDITSTFVGISTNSAITRNETVSTQFNATEMEYNSITKVSIDEEMTNLIKYQ 601 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 SY + K+I D+M+QTLL + Sbjct: 602 TSYGAAAKVITTVDQMMQTLLGIKQ 626 >gi|315180485|gb|ADT87399.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 397 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/474 (10%), Positives = 110/474 (23%), Gaps = 78/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N ++Q+ +I NI N + T + + Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNGQQAGGVQVMG---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S R L D + + + L Sbjct: 59 NFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D + + + A Sbjct: 119 YTVDGNN-------------------------------NLLAGSMGPLKVDMSSLEAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + DF D + I ++ YT T ++++ + + T Sbjct: 148 NKVDFAANLDDRVDAIDTTENPFDPKNVDSYNNSYT---TPVYDSKGNEHTLTQYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + I S+ + L + Sbjct: 205 DNTWEIHSIVDGDTSTLTTTPATFDSKGNLTSATAYTI---------------------- 242 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I+ + QY S+ ++ + + Sbjct: 243 -----------------SASAAGADTLNITVDMTNLSQYGSDFVVSKNNPNGYTSGSFTD 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + + +A N L++ ++ W + S + Sbjct: 286 IRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQ--TSNTAWTQTYGSGQPVYGIPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F ++ V+L EL L+ +++Y + K I D+++ +L V Sbjct: 344 SGQFGELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397 >gi|308050024|ref|YP_003913590.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632214|gb|ADN76516.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 407 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/474 (10%), Positives = 105/474 (22%), Gaps = 68/474 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + SQ +I NI N + T N Sbjct: 2 SFNIALSGLRSTSQDLNTISNNIANVSTPGFRGSRTEFASVYAGGQGGGVAVAN----VS 57 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ + + Y + L Sbjct: 58 QNFNTGGDVLYTGRELDMAISGSGFFMTNNQGTTTYTRSGMFAQDKDGYVVDSHGGKLQG 117 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + +++ D +++ S V+N Sbjct: 118 YQVGPNGQLLTGAV------------TDLQVQTGSLPANATTSMGLVLN----------- 154 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 LD R+ + + ++ N +Y S G T Sbjct: 155 -----LDSRNDAVDPANFDPADASTYHALNSTKIYDSLGNEHNLTQYYMKTGPNQWEVRY 209 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + S S + + Q+ + L+ + Sbjct: 210 ELDGTDVTAYASDTSITFDS--------------NGALVGGQDLTLNIPDNLVDADGNPI 255 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 IS + Q+ S+ + + Sbjct: 256 LDG--------------------SSALDISLSFNGATQFGSDFAVASMRQDGYSSGELSG 295 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + L Y + ++ +A L + W S Sbjct: 296 IRIDDNGMLYGVYTNGQDQLQGQVILANFANPNGLQQVGN--TAWTATFASGQPVTGAAG 353 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V+L EL L+ +++Y + K+I DK+ Q L + Sbjct: 354 TGTMGSLTAGAIEGSNVDLTGELVNLMTAQRNYQSNAKVISTQDKLTQALFSAI 407 >gi|331657138|ref|ZP_08358100.1| flagellar hook protein FlgE [Escherichia coli TA206] gi|331055386|gb|EGI27395.1| flagellar hook protein FlgE [Escherichia coli TA206] Length = 401 Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNHWDVYTLDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++SN + + G I Sbjct: 220 GTANPATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|221215578|ref|ZP_03588541.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD1] gi|221164566|gb|EED97049.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD1] Length = 698 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/394 (12%), Positives = 123/394 (31%), Gaps = 19/394 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 40 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 98 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L+ + G S A + I+ Sbjct: 99 NTVTVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 156 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ + +T I NA+ + + ++ +R + ++ +S + + +++ Sbjct: 157 LQNVANNAADPTVRQTAISNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 216 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + ++ V+ + G L Sbjct: 217 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVA 275 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ +++ G + LL R + Sbjct: 276 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDP 335 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q +L +A + ++ + + G + + + Sbjct: 336 AQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSFSN 395 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 ++ D + + + A + Sbjct: 396 ASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 429 Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + K A Q +A + + + ++ F Sbjct: 334 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSF 393 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238 AS+ D+ D +++ S + N + D + T+ F Sbjct: 394 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 453 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + +G +++ ++ + V +Q + Sbjct: 454 VLPTRGALDGFQLATSNGSAIAAASPVVTSAASTNAGTATITQGPVSAGYQVPATTLTYD 513 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355 P I + + + + + Sbjct: 514 AATKSLSGFPAGTTVTIAGTPPQTVTIASSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 573 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y N ++ + + + N VTL + + + Sbjct: 574 LSGAPADGDTFQIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 633 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I+ + + GVN EE + L++ +Q Y + K+I + QT+ Sbjct: 634 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 693 Query: 476 LEG 478 L Sbjct: 694 LGL 696 >gi|331682578|ref|ZP_08383197.1| flagellar hook protein FlgE [Escherichia coli H299] gi|331080209|gb|EGI51388.1| flagellar hook protein FlgE [Escherichia coli H299] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++S+ + + G I Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q + + + K Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|94968673|ref|YP_590721.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] gi|94550723|gb|ABF40647.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] Length = 409 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/474 (8%), Positives = 110/474 (23%), Gaps = 68/474 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 F+ + +S A+I N+ N + Y + + + ++ Sbjct: 4 FSIPLSGLTASSTALATIANNLANQNTIGYKQTRALF---------------RDLFYQQI 48 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 S Q + + ++ + D +N ++ Sbjct: 49 GQTGSGDPIQVGAGTMIGTIDTNFTDGSVSPTGVPTDVAIMGDGFFVAQQNGNDIYTRAG 108 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + A + + S L +N ++ Sbjct: 109 NFKVGADGTLRTQDGAVVLG----------YQAVDGKVTTGSGLGALNLGQGQVSSPSAT 158 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + ++ + + +L F K + T Sbjct: 159 T------------SLQLTTNLNASAKVGDSYNTSLKVYDSLGGVHVVTFTFTKTGTNTWD 206 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 +++ +G V + + L ++ D + + ++ D Sbjct: 207 YDASLPTGEGTVSLPSGSHTLTFDSDGKLTTPSSNINFDLTGLSDGASDMKGVTWKLYDA 266 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 G Q ++ + + Sbjct: 267 TGG-----------------------------SSMTQMAADSATPATAQDGYGSGMLQNF 297 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 N+ + + + +A L + +N ++ S L Sbjct: 298 NIGADGTIEGTFSNGKTSIIGQIAIASFPNVQGLRKVGQN--AYVGTLASGQAALGAPGS 355 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V++ E S LI ++ Y + K+I D++ Q + + Sbjct: 356 GGRGTLGGGALELSNVDMATEFSNLIVAQRGYQANAKVITTFDEITQDTINLKR 409 >gi|222084885|ref|YP_002543414.1| flagellar hook protein [Agrobacterium radiobacter K84] gi|221722333|gb|ACM25489.1| flagellar hook protein [Agrobacterium radiobacter K84] Length = 425 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 48/481 (9%), Positives = 113/481 (23%), Gaps = 57/481 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + A++ NI N+ Y + T + + S Sbjct: 1 MSIFGSMKTAISGMNAQANRLATVSDNIANSSTTGYKQASTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYSKNLS 119 + + + + N + Sbjct: 61 ETTVRYAISQQGTVSATTSSTDLAIQGNGFFVVQSAAGQTFLTRSGDFSADASGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + V S + + ++ L+ + Sbjct: 121 GFTLMGYSSASGAPSVVVNGFSGMVPINVTPSGTSVAATTVGSMTGNLNSNATIAT---- 176 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S G + T +++ + F+ Sbjct: 177 ----------------------SSSTGYLPSENTYPVTTDTSKSSITGYDSQGNAVTFDI 214 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T + + + + ++ S P + Sbjct: 215 YYTKTADNTWDVQVYNQADLVASPTSGGP---------------------------LYSS 247 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + + + Q I+ + Q ++ S + Sbjct: 248 AAVGSTEMTFDDDGALVSGGTFDLSFTSGSTTQSIAMDMTGFTQVATDFSATGKMDGQAP 307 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 +A + Y DS K P+A + + +L + N S Sbjct: 308 NP-VTSVTIAKDGTVSAVYKDSSTKELYRIPLATVASPDSLTLESGNVYS--ANGDSGVT 364 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I V+L EL+ +I ++SY ++K+ +L L+ Sbjct: 365 VTGWPQSGGLGYIQSGALEESNVDLATELTNMITAQKSYTANSKVFQAGSDLLDVLVNLQ 424 Query: 480 K 480 + Sbjct: 425 R 425 >gi|308186399|ref|YP_003930530.1| Flagellar hook-associated protein 1 (HAP1) [Pantoea vagans C9-1] gi|308056909|gb|ADO09081.1| Flagellar hook-associated protein 1 (HAP1) [Pantoea vagans C9-1] Length = 550 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/551 (10%), Positives = 146/551 (26%), Gaps = 77/551 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + + A ++ NI N Y R+ T+ + V + Sbjct: 1 MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTVLAQANSTLQGNSYYGNGVNI 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L S+ + + + S + + +L+ Sbjct: 61 TGVQREYDAFIATQLRGSSAN--YSAVSTQHSQISNIDDLLSTSTTSLSTSLQGFFTNLQ 118 Query: 113 SYSKNLSEDILGKTV-------IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + N ++ +++ + + Q N V + K++ S + Sbjct: 119 NVVSNANDPSARQSMLSNAQGLVSQFQTSAQYLNNMQNSVNADIGSSIKQVNTITSQIAD 178 Query: 166 F------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + +++ + + + Q+D ++ G++ + + Sbjct: 179 LNQQIGKLSTANGAAPNDLLDKRDQLVNTLNNVVGVTVSQQDGGGYTVAMANGLTLVNGD 238 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + +V + + T ++ + N + G++ Q + + ++ Sbjct: 239 KSHDLVAMNSSSDPTRTTIGYVDKQAGNVEIPEKLITTGSLGGLLAFRTQDLDLAQNQLG 298 Query: 274 ALLQIRDSVVPIFQNQ--------------------LDEMARVLIGSFSEKDPIAGNSEN 313 L + Q + S + + + Sbjct: 299 QLAAAFTTSFNDVHKQGFDSNGDQGVDFFNIGSPLVVSNSKNSTAASVTAEWTDTSALKA 358 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-------------------- 353 DG + + I + N + D Sbjct: 359 TNYNVSFDGTNWTATRASDSTAAAITQSTDASGNTTLSFDGLKLTVGATPAPAAKDSFLV 418 Query: 354 ------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 +S + A + K + N TL + Sbjct: 419 KPVQNVVNDMSVAITNESQVAAAGAVGGESDNRNAQKLLALQDAKLVGGNATLSQAYATI 478 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + S + V + ++E + GVNL EE + L K +Q Y + +++ Sbjct: 479 VSSVGNKTSSLETTSDTQKSVVSQLTERQQSVSGVNLDEEYANLTKYQQYYMANAQVLQT 538 Query: 468 TDKMLQTLLEG 478 + L+ Sbjct: 539 ASTVFNALINI 549 >gi|193069470|ref|ZP_03050424.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|192957218|gb|EDV87667.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|323174795|gb|EFZ60410.1| flagellar hook protein flgE [Escherichia coli LT-68] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKTGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|170694400|ref|ZP_02885554.1| flagellar hook-associated protein FlgK [Burkholderia graminis C4D1M] gi|170140823|gb|EDT08997.1| flagellar hook-associated protein FlgK [Burkholderia graminis C4D1M] Length = 657 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 60/440 (13%), Positives = 131/440 (29%), Gaps = 23/440 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + + V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGFLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT + L+ S+ S + + I+ ++ Sbjct: 61 VTVTRQYSQYLTTQLNNAQSSSSSLATYNSLISQLNNLVGSPTA--GLASAITGYFTGMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N S +T + A+ + N + ++ +R + ++ +S + + ++ Sbjct: 119 NVSNNASSLATRQTAMSGAQTLANQINAAGQQYDALRESVNTQLSNTVSQINSYTQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LDQRD+ + +S++IG+ + +N V+ S+G L Sbjct: 179 LNGQISAASTQGQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGSYGVFMSNGQPLVSGGN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + S + G + LL R + + Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQILPDSKIDGGTLGGLLAFRSQTLDPAE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TICVNP 342 QL +A + ++ + V G + Q + Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLNVSFANPA 357 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q + L G+ + + G ++ + N + G + V Sbjct: 358 QPTTGDYTLAYNGTGYTLTDNSTGTVVGSAANLSQPINGLNFSTTGTMNPGDSFTVEPTR 417 Query: 403 YARNSIGWLEKNRSDSHDLH 422 A NS + + S Sbjct: 418 GALNSFATVTTDGSAIAAAS 437 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/442 (8%), Positives = 101/442 (22%), Gaps = 3/442 (0%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + V + + L S L + A Sbjct: 214 QVVNSNGSYGVFMSNGQPLVSGGNSFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQILP 273 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + L ++ + + Q +A + + Sbjct: 274 DSKIDGGTLGGLLAFRSQTLDPAEAQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVG 333 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + + F ++ D+ + +++ + + N Sbjct: 334 GPTVYANTQNTGNASLNVSFANPAQPTTGDYTLAYNGTGYTLTDNSTGTVVGSAANLSQP 393 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ---GSAVPKGKIKALL 276 + T+ +F + + + DG +++ GSA + Sbjct: 394 INGLNFSTTGTMNPGDSFTVEPTRGALNSFATVTTDGSAIAAASPVLGSAASTNTGTGAI 453 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + + Sbjct: 454 SQGTVTAGYTMPSSTTTLTYNGTGLTGFPVGSTVTVAGSPATTYPITSATTVVPYSSATG 513 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + N ++ + + + Sbjct: 514 ASLTINNTTAGQMDKVSVTISGVPSAGDKFTIGPNSGANNDGRNALALSNLSTAKSMNGG 573 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 VTL N + + + + I+ + + GVN+ EE + L++ +Q Sbjct: 574 TVTLTGAYANYVNDIGNQTNQIQTSSTAQASLVTQITTAQQSVSGVNINEEAANLLQYQQ 633 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 Y ++K+I + QTLL Sbjct: 634 LYQANSKVIQTAQTLFQTLLGI 655 >gi|153951334|ref|YP_001397315.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938780|gb|ABS43521.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] Length = 545 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 59/545 (10%), Positives = 136/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D N + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYNTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S I K + N+ + Y Sbjct: 61 YGSGAASSQVVFEQGSPIASDGEFDVALQGKGFFGVLEADGNAYYTRNGSFKRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F TV A Sbjct: 121 DSYGNFVLGTMNPVFTGMNYSDRVAGLMGDYLNTGTPVNNGFTVNSNNPFSIGTTVSQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI----------STIVRNNNDMVVYTSDGT- 225 IK + + + I + + + VV S G Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTITEVVKVDLDPSKFNVTKTEDGKYVVSGSVGKE 240 Query: 226 -------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQESDNIQYKAIAQIYDSNRNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSTELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|78067830|ref|YP_370599.1| flagellar hook-associated protein FlgK [Burkholderia sp. 383] gi|77968575|gb|ABB09955.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 660 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 123/392 (31%), Gaps = 19/392 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS + N + N A + NI NA Y + + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGNNISNAATPGYSVQRPVYAEASSQYSGSGYMPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L+ + G + A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNTAQTQGGALSTWYTLVAQLNNYIGSPTA--GISTGITSYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I NA+ + N + ++ +R + ++ +S + + +++ Sbjct: 118 LQNVANNASDPSVRQTAISNAQTLANQLNAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + LDQRD+ + +S + GI + RN++ V+ S G L Sbjct: 178 AQLNQQIAAASSQGQPPNQLLDQRDLAVSNLSGLTGIQVV-RNDSGYSVFMSGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ S++ G + LL R + Sbjct: 237 DKSYQLAAVTSPSDPSELTVVSQGIAGAKPQGPNQPLPDSSLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + G + Sbjct: 297 AQAQLGAIATSFAAQVNAQNALGIDLSGNKGGNLFTTPSPTVYANQGNTGNASLSVSFAN 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 ++ D + + + A + Sbjct: 357 ASQPTTSDYTLSFDGANYTLTDRASGAVVDQK 388 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 41/444 (9%), Positives = 106/444 (23%), Gaps = 5/444 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + S +V + + L A +S L + + + Sbjct: 215 QVVRNDSGYSVFMSGGQPLVVADKSYQLAAVTSPSDPSELTVVSQGIAGAKPQGPNQPLP 274 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + L ++ + + Q +A + Sbjct: 275 DSSLSGGTLGGLLAFRSQTLDPAQAQLGAIATSFAAQVNAQNALGIDLSGNKGGNLFTTP 334 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + ++ F AS+ D+ D +++ + + + M V Sbjct: 335 SPTVYANQGNTGNASLSVSFANASQPTTSDYTLSFDGANYTLTDRASGAVVDQKAGPMPV 394 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + + T + + ++ S Sbjct: 395 SLGGLNFSIPSGSMSAGDKFTVLPTRGALNGFGLATTSALAIAAASPAVTSAASTNTGTG 454 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + L + K + N + Sbjct: 455 KITLGGVTSGYQVPTTKLTYDATAKTLTGFPVGTTVTIGTTPPTSVTINNPTDTVPYDPA 514 Query: 340 VNPQYRSNPSFLRDGGSV-----SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + V + + Y + ++ + + + A Sbjct: 515 AGATMTMSGTAAGALNGVSVTLSGAPATGDSFTIGPYAGGTSDGSNALALSKLVNAKAFG 574 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 N TL + + + + + I+E+ + GV+ EE + L++ Sbjct: 575 NGTTTLTGAYASYVNGIGNTTTQLKSSSAAQTGLIGQITEAQQSVSGVSTNEEAANLMQY 634 Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478 +Q Y + K+I + QT+L Sbjct: 635 QQFYQANAKVIQTAATLFQTVLGL 658 >gi|259908806|ref|YP_002649162.1| flagellar hook-associated protein FlgK [Erwinia pyrifoliae Ep1/96] gi|224964428|emb|CAX55937.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae Ep1/96] Length = 551 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 74/550 (13%), Positives = 156/550 (28%), Gaps = 73/550 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + +S + NI N Y R+ T+ S V Sbjct: 1 MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQ----------------------QRLLQSFEALKEMM 90 + E +K L A S+ +Q + + Sbjct: 61 SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMMSGTTNTLSTTIQDLFKSLQTL 120 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLS-----EDILGKTVIDNAEEVVQNFNTSAREV 145 +++ ++S + K + + + + L +V E+V A Sbjct: 121 ASNASDSSSRQAVLGKAEGLVNQFKATDTYLTNVDSGLNTSVKSTVEQVNNYAKQIANVN 180 Query: 146 QKIR----------------------ADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 Q+I + +K + + +S +++ N + Sbjct: 181 QQIAKLKGAGAGSEPNDLLDKRDLLVSQLNKLVGVNVSQQDGGSYSISIGNGISLVQGDR 240 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNS 242 D I+ + ++ + + G L + ++ Sbjct: 241 FEQLAAVPSSADPARTTIANVDSVTGAKTEIAESQFTSGSLGGLLAFRHDLEGVRNQIGQ 300 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIG 299 + S+ V S+ K+ A+ + D + Sbjct: 301 LALALGSSFNTQHQAGVDSDGDKGEAFFKLGNPSAMSNSLNKGNASLSVAYDASKTGDVK 360 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------CVNPQYRSNPSFLRD 353 + + K + S NV L +KD+D + ++ ++ Sbjct: 361 ASNYKMTLENGSWNVVRLSDNSKVKDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYIIKP 420 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF----IFDPVAGINTNVTLLEYARNSIG 409 SV N+ + A +S N+N IN TL + + + Sbjct: 421 VSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYASLVA 480 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + V ++ + GVNL EE S L + +Q Y + +++ Sbjct: 481 DVGNKTSSLEATNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQTAS 540 Query: 470 KMLQTLLEGV 479 + Q+LL V Sbjct: 541 TLFQSLLTAV 550 >gi|91225873|ref|ZP_01260842.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269965424|ref|ZP_06179543.1| flagellar hook protein [Vibrio alginolyticus 40B] gi|91189523|gb|EAS75799.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269829903|gb|EEZ84133.1| flagellar hook protein [Vibrio alginolyticus 40B] Length = 437 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 40/481 (8%), Positives = 112/481 (23%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + E+Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNE---LTRNGAFHLNKENYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D + V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVDPSSGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + G + +L + + Sbjct: 225 TDKEGEKPLNVAAGDAQTPTGHVGHTMKFNNDGTLASLNN-------------GQPITSV 271 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + Q+ + + Sbjct: 272 ALGDPATNTTPVDMNGADPAQTLNFGLGSA--------------TQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|221199746|ref|ZP_03572789.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD2M] gi|221208649|ref|ZP_03581649.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD2] gi|221171460|gb|EEE03907.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD2] gi|221179985|gb|EEE12389.1| flagellar hook-associated protein FlgK [Burkholderia multivorans CGD2M] Length = 698 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 48/394 (12%), Positives = 123/394 (31%), Gaps = 19/394 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50 MS + N + N A + +NI NA Y + + P+ V Sbjct: 40 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 98 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L+ + G S A + I+ Sbjct: 99 NTVTVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 156 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N ++ + +T + NA+ + + ++ +R + ++ +S + + +++ Sbjct: 157 LQNVANNAADPTVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSAVSQINTYTAQI 216 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + ++ V+ + G L Sbjct: 217 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVA 275 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ +++ G + LL R + Sbjct: 276 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDP 335 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q +L +A + ++ + + G + + + Sbjct: 336 AQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYADTRNQGDATLSVSFSN 395 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 ++ D + + + A + Sbjct: 396 ASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 429 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + K A Q +A + + + ++ F Sbjct: 334 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYADTRNQGDATLSVSF 393 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238 AS+ D+ D +++ S + N + D + T+ F Sbjct: 394 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 453 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + +G +++ ++ + V +Q + Sbjct: 454 VLPTRGALDGFKLATSNGSAIAAASPVVTSAASTNAGTATITQGPVGAGYQVPATTLTYD 513 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355 P I + + + + + Sbjct: 514 AATKSLSGFPAGTTVTIAGTPPQTVTIASSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 573 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y N ++ + + + N VTL + + + Sbjct: 574 LSGAPADGDTFTIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 633 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I+ + + GVN EE + L++ +Q Y + K+I + QT+ Sbjct: 634 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 693 Query: 476 LEG 478 L Sbjct: 694 LGL 696 >gi|94312669|ref|YP_585878.1| flagellar hook protein [Cupriavidus metallidurans CH34] gi|93356521|gb|ABF10609.1| flagellar hook protein [Cupriavidus metallidurans CH34] Length = 415 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/476 (8%), Positives = 99/476 (20%), Gaps = 65/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN---KNM 62 F + + N A+ I NI NA+ + + + N ++ Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGFKQSTAQFADVYAGSKIGLGTRVNSVVQSF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + + + + + + N S Sbjct: 62 TNGNISSTGRNLDVAISNGNGF-----FRLASTDGGVYYSRNGQFQRLDDGRLVNASGLQ 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + T+A V + + Sbjct: 117 VTGYPAG----------TTAGGVAPQPIVISNAQMPPQATTNIKAQFQLDSRSTVPTNAF 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + S + + + N + Y P + Sbjct: 167 VSTPGATPPVLPNSTMFNYSTAMTVYDSLGNKQQLTAYFGKSIPATTPAPPNAFGGTDWD 226 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 VT S + L Sbjct: 227 MNVTDASGNV--------------------------------------------LQTVKL 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + + Q+ ++ + Sbjct: 243 SFDANGMLKAPSATTMPTVTLPAANGAAAMTATLDLSGTTQFGADNDPKSIVQNGFTSGS 302 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++ + + K+ +A L N W S L Sbjct: 303 LLGFSVQSDGTILGSFSNEQTKSLGQIAMAAFGNAEGLKPEGNNV--WSATGASGQELLG 360 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +L LI +++Y + + I D ++QTL+ Sbjct: 361 VAG-GSMGTLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 415 >gi|255022062|ref|ZP_05294068.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] gi|254968548|gb|EET26104.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] Length = 661 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 57/432 (13%), Positives = 119/432 (27%), Gaps = 14/432 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----------N 49 MSL + + + ++ NI N + YV +P Sbjct: 1 MSLNGILQVGLSGVLASENALQTVSNNIANENTPGYVSEVANLATNPSQPTTFPGGLGEG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + +S + + + + IS Sbjct: 61 VQTASISRNFSKFAQTQFMNATSMAAASSGEVNTLQQLSSLFPVTSGQSGLSSAISNFYA 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + ++ S N S ++V+ A+ + + S + ++ ++++ + + S+ Sbjct: 121 AFQTLSTNPSSIPDRQSVLSQAQSLTAQYQNSINTIASVKNGLVQQMQQSVGTINALSSQ 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L +N +I + + LD + L ++S+ IGI+TI ++ ++V T G TL + Sbjct: 181 LAKINQSILATPSGSSIPNSLLDSQAAALDQLSKQIGINTITTSDGTLIVTTKSGATLVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + I N + + G + L + V Q Q Sbjct: 241 GSQSMKLAVQAGGQFQQPGQGGIVY--QPTGQNLTAKIAGGALGGALSAQARVN-QIQLQ 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +A+ ++ + + + G I + + Sbjct: 298 LGLLAQGIVAVTNSQQAKGVDLNGNFGAPIFSVQGPEVFPADTNQGNALITASVTDLSSV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 WNV N A F V T + + G Sbjct: 358 PPTTFTLEYNGSQWNVINDANGTSQTLTASSGGTLQFGGMTVQVSGTAAAGDSFLLDPAG 417 Query: 410 WLEKNRSDSHDL 421 Sbjct: 418 ATAGAFQTVMTD 429 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 85/317 (26%), Gaps = 2/317 (0%) Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + +++L+ V + + D + G + + Sbjct: 347 ITASVTDLSSVPPTTFTLEYNGSQWNVINDANGTSQTLTASSGGTLQFGGMTVQVSGTAA 406 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 G + T ++ F + S K + Sbjct: 407 AGDSFLLDPAGATAGAFQTVMTDPNQIAAAFPYVASPGTVSSSGGLVNKNIGTESLSSGT 466 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V N +A V G + + S + + G+ S + + Sbjct: 467 VVSTGNYGSGVAVVPSGIAPQSLSLTFTSATQYNILTSGGVVIASGSWGGPGSTAVVIPY 526 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 S S + ++ + D N ++ + Sbjct: 527 PSNGLASGSAMSFSWDGGQPVAGDSFTFSSGAPGDNANAVTMAQVSDQAVLQNG--SINQ 584 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + + V + + + SN GVNL EE + ++ Q+Y ++ Sbjct: 585 TIADLSSTYGNFTQVAKQSQSAANAVLSQATTALSNISGVNLNEEAAQVVNYTQAYQAAS 644 Query: 463 KLIMFTDKMLQTLLEGV 479 +I T+ + Q+LL+ V Sbjct: 645 AIIQTTNTLFQSLLQAV 661 >gi|115353111|ref|YP_774950.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria AMMD] gi|115283099|gb|ABI88616.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria AMMD] Length = 665 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 58/414 (14%), Positives = 129/414 (31%), Gaps = 19/414 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS + N + N A + +NI NA Y + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L++ S G S A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I NA+ + + ++ +R + ++ +S + + S++ Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTSQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + RN++ V+ + G L Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ + +++ G + LL R + Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFAVANPAVYSNQGNTGTASLSVSFAN 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + D + + + A + + + A + N Sbjct: 357 AAQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 61/235 (25%) Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T + + V +S+ K A+ + D ++ L G + Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKIAQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + + + + Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + + Y + ++ + + + TL + + S Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYAKYVNAIGNTASQLKSSSA 608 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663 >gi|168764488|ref|ZP_02789495.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501] gi|189365520|gb|EDU83936.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501] Length = 401 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNQVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q + + + K Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|90423517|ref|YP_531887.1| hypothetical protein RPC_2013 [Rhodopseudomonas palustris BisB18] gi|90105531|gb|ABD87568.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 464 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 53/489 (10%), Positives = 124/489 (25%), Gaps = 34/489 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53 MS+ A N A + S +I NI NA + R DT N V Sbjct: 1 MSITAAINTAISGMAAQSYAIGNISGNIANAHTPGFKRIDTSFADLVSNQGPKRTLAGPV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + L A F + + S S + Sbjct: 61 LAEARFTTSVQGPLTATGVGTNMAINGSGFFTVMQRESG---SAQSVYTRRGDFAVDKQG 117 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNF--NTSAREVQKIRADADKEIELEISNLRRFLSELT 171 Y N + L +D V + A R + + + + + Sbjct: 118 YLVNGTGGYLLGNNLDPVSGRVTSSGLIKIANTTLPGRQTTRIDYAANLPKVPTTTASVG 177 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + +A D + +++ + +Y + G+ + Sbjct: 178 GDSSPYTVASAVVIDPTLTAPDLTKKVVGAAQVPAFLDKSLMGPSLTMYMAGGSPASLST 237 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + T + ++ + S +VP + Sbjct: 238 RWAKVQDAAATATPPKNAIWNLFYASSSTAAKDSDWVNVGSAFSFDSAGKLVPPAHATV- 296 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + ++ +A + + S + N + Sbjct: 297 ---------------SSSGAVSLKIPQVAVDGVSVGDITMNLGSSGLTQNAASAGTVTTN 341 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 +++G ++ + + + V L + + Sbjct: 342 ALAQDGYASGSLKSLSVSGDGTIVGSFSNEMTASVATAGVVNFMNPNGLRPTSGG--NYE 399 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + I ++ + S L+ +Q+Y+ + K++ ++M Sbjct: 400 QSRDSGAPLAGLNG----GTIVGGNIEGSNSDVAGQFSKLVATQQAYSANVKVMTTANQM 455 Query: 472 LQTLLEGVK 480 + LL V+ Sbjct: 456 MADLLNAVR 464 >gi|161503735|ref|YP_001570847.1| flagellar hook protein FlgE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865082|gb|ABX21705.1| hypothetical protein SARI_01820 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 402 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 110/476 (23%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ A I + + + VN + Sbjct: 116 LTGYPATGTPP----------TIQQGANPAPITIPNTLMAAKSTTTASMQVNLN-----S 160 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + D + + N +DM VY V + + + Sbjct: 161 TDPVPTKAFNPADADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPTAT 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + F + ++ S + G I Sbjct: 221 APTAASTTLKFNENGILESGGTVNITTGTING---------------------------- 252 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 253 -------------------------ATAATFSLNFLNSMQQNTGANNIVATNQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|171322357|ref|ZP_02911181.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria MEX-5] gi|171092319|gb|EDT37688.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria MEX-5] Length = 665 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 57/414 (13%), Positives = 130/414 (31%), Gaps = 19/414 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS + N + N A + +NI NA Y + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L++ S G S A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I NA+ + + ++ +R + ++ +S + + +++ Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + RN++ V+ + G L Sbjct: 178 AQLNQQITAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ + +++ G + LL R + Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLAGKPGGNLFAVANPAVYSNQGNTGNASLSVSFAN 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ D + + + A + + + A + N Sbjct: 357 ASQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 63/235 (26%) Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T + + V +S+ K A+ + D ++ L G + Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + + + + + Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTIMSTTQPAPAGVMNGVTVTLSGAPSDG 548 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + + Y + ++ + + + TL N + + S Sbjct: 549 DAFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLKSSSA 608 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663 >gi|53717921|ref|YP_106907.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei K96243] gi|53724572|ref|YP_104805.1| flagellar hook-associated protein FlgK [Burkholderia mallei ATCC 23344] gi|121601252|ref|YP_994298.1| flagellar hook-associated protein FlgK [Burkholderia mallei SAVP1] gi|124385698|ref|YP_001028053.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC 10229] gi|126448312|ref|YP_001082860.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC 10247] gi|126451511|ref|YP_001064571.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1106a] gi|167717670|ref|ZP_02400906.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei DM98] gi|167736711|ref|ZP_02409485.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 14] gi|167813810|ref|ZP_02445490.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 91] gi|167822327|ref|ZP_02453798.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 9] gi|167843917|ref|ZP_02469425.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei B7210] gi|167900916|ref|ZP_02488121.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei NCTC 13177] gi|242314954|ref|ZP_04813970.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1106b] gi|254174885|ref|ZP_04881546.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC 10399] gi|254197004|ref|ZP_04903428.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei S13] gi|254359739|ref|ZP_04976010.1| flagellar hook-associated protein 1 [Burkholderia mallei 2002721280] gi|52208335|emb|CAH34268.1| putative flagellar hook-associated protein [Burkholderia pseudomallei K96243] gi|52427995|gb|AAU48588.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC 23344] gi|121230062|gb|ABM52580.1| flagellar hook-associated protein 1 [Burkholderia mallei SAVP1] gi|124293718|gb|ABN02987.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC 10229] gi|126225153|gb|ABN88693.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1106a] gi|126241182|gb|ABO04275.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC 10247] gi|148028953|gb|EDK86885.1| flagellar hook-associated protein 1 [Burkholderia mallei 2002721280] gi|160695930|gb|EDP85900.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC 10399] gi|169653747|gb|EDS86440.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei S13] gi|242138193|gb|EES24595.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei 1106b] Length = 667 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 63/498 (12%), Positives = 144/498 (28%), Gaps = 49/498 (9%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V+ V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + L+A + + A I+ L++ Sbjct: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ + Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVGNAS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+ ++ G + LL R + Q Sbjct: 240 YQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-------------- 334 QL +A + ++ + + PG + Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGTQ 359 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 T Y L D + S + + + D + Sbjct: 360 PTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTVL 419 Query: 395 NTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T L ++ + + + +S Y G Sbjct: 420 PTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG------- 472 Query: 449 SFLIKVEQSYNISNKLIM 466 +YN ++K + Sbjct: 473 ----TTTLAYNAASKTLS 486 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S V+ + + A + + L + + + + + + Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +L T +F + + + +G +++ + + Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 462 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 QL L + + K + + Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395 + + V ++ D N ++ + + + N Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + S + I+++ + GVN EE + L++ + Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 Q Y + K+I + + QT+L Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665 >gi|71280733|ref|YP_268222.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] gi|71146473|gb|AAZ26946.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] Length = 554 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 45/558 (8%), Positives = 119/558 (21%), Gaps = 91/558 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + N A + NI N + + + V Sbjct: 2 SFNIALSGLNAAQKDLDVSSNNIANVNTVGFKESRAEFVDVYASSLLAAGKTKVGDGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++A+ F A + + + + + + +++ Sbjct: 62 ADVAQQFSQGSIQFTNNALDLAITGNGFFATVPELGSLETS----YTRAGQFKLNSDNFV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQ----------------------------- 146 N L ++ ++A ++ Sbjct: 118 VNSQGGHLLGFPVNPDGSSASVSLSTAEPIRIPTESGTPTKTSEVDVRMNLPAGAGYITS 177 Query: 147 -----KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +K A + D + Sbjct: 178 APANFDPEDPLTFNSSTSVTIFDSLGKSHIMTYFFVKDDPAVAPNQWMMFASVDGKPIDL 237 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 ++ + + + + Sbjct: 238 ADDPTVQATAEAAVVTAQANVATAQASVVTSQTTLNTTQATLNTEEANVITAQATYDAIV 297 Query: 262 NQGSAVPKGKIKALLQIRDSVV--------------PIFQNQLDEMARVLIGSFSEKDPI 307 +A + A++ RD+ + N L + + + E Sbjct: 298 GVPTAAQDATLAAVIATRDAAIITRDAALNAQTVSETNLTNSLAIASTAISATTPESGTG 357 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + + + ++P+ N Sbjct: 358 TKGARLTYNSSGDFISQSPSPTNGGIRTVDFSSHLPNGADPTQTVKVDFNLDTAGPNPNE 417 Query: 368 LAGYPDLI---------------------------NHYCDSFNKNFIFDPVAGINTNVTL 400 + Y + ++ + L Sbjct: 418 PTQFASNFEVTALNQDGLAVGRLTGIEIGVDGLVRATYSNGTSQPLSRIAMVNFANEQGL 477 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + W E S F I+ S VNL EL LI ++++ Sbjct: 478 SQTGGS--NWKESLVSGKALAGEAGSGTFGTINSSALEQSNVNLTTELIDLISAQRNFQA 535 Query: 461 SNKLIMFTDKMLQTLLEG 478 +++ + +++ QT+L+ Sbjct: 536 NSRALEVDNQLNQTILQI 553 >gi|167917171|ref|ZP_02504262.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei BCC215] Length = 667 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 63/498 (12%), Positives = 144/498 (28%), Gaps = 49/498 (9%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V+ V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + L+A + + A I+ L++ Sbjct: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ + Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAARQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I ++ + LDQRD+ + K+S++ G+ + ++N + V+ S G L Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVGNAS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+ ++ G + LL R + Q Sbjct: 240 YQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-------------- 334 QL +A + ++ + + PG + Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGTQ 359 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 T Y L D + S + + + D + Sbjct: 360 PTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTVL 419 Query: 395 NTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 T L ++ + + + +S Y G Sbjct: 420 PTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG------- 472 Query: 449 SFLIKVEQSYNISNKLIM 466 +YN ++K + Sbjct: 473 ----TTTLAYNAASKTLS 486 Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%) Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S V+ + + A + + L + + + + + + Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 +L T +F + + + +G +++ + + Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 462 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 QL L + + K + + Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395 + + V ++ D N ++ + + + N Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 TL + + S + I+++ + GVN EE + L++ + Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 Q Y + K+I + + QT+L Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665 >gi|161614600|ref|YP_001588565.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168237259|ref|ZP_02662317.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244776|ref|ZP_02669708.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449419|ref|YP_002045176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736988|ref|YP_002114176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161363964|gb|ABX67732.1| hypothetical protein SPAB_02350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407723|gb|ACF67942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712490|gb|ACF91711.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289882|gb|EDY29243.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336442|gb|EDZ23206.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 403 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 53/476 (11%), Positives = 106/476 (22%), Gaps = 78/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q A + I N T + I + Sbjct: 116 LTGYPATGTPPTIQQGANPA--------------PITIPNTLMAAKSTTTASMQINLNST 161 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + + N +DM VY V + + + Sbjct: 162 DPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + +F + S + G I Sbjct: 222 APAAPSTTLVFNANGTLQSGGTVNITTGTING---------------------------- 253 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 254 -------------------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGD 288 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 289 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 346 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 347 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402 >gi|74317652|ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] gi|74057147|gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] Length = 405 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 109/483 (22%), Gaps = 90/483 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55 F + + N A++ I N+ NA + + N V Sbjct: 2 SFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVKV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + ++ + F + D+ + + Y Sbjct: 62 AQVAQQFTQGNITSTNNPLDMAINGGGFFRM-------DNGGEIAYQRNGQFQLDKNGYI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L + + + L + Sbjct: 115 VNPTGGKLTGYTANASGVLSTGAPA----------------------------PLAINTA 146 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + S+ +A LD L S + T ++ VY S G Sbjct: 147 DLTPQATSEVNAVLNLDSTGTALPAASFDMNDPTTYHSSTAASVYDSLGNQHTLQTYYVK 206 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + S+ PI G VS+ + Sbjct: 207 TAAGTWNVYAASDGTPIPAAGTPVSTLTFNGSGALTGGG--------------------- 245 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + Q+ S S Sbjct: 246 ----------------------QFTVTAPVTTGANPITAAFDFTGTTQFGSAFSVNTLNQ 283 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N+ ++ Y + + +A L + N W E Sbjct: 284 DGYTSGRLAGFNIGADGTILGRYTNGQSAVLGQVVLANFANPNGLQQMGNNL--WTETAT 341 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + S V+L EL +I ++ Y + + I D +LQTL Sbjct: 342 SGTPLVGTPDSGGLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKSQDAVLQTL 401 Query: 476 LEG 478 + Sbjct: 402 VNL 404 >gi|310767296|gb|ADP12246.1| flagellar hook-associated protein FlgK [Erwinia sp. Ejp617] Length = 551 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 69/550 (12%), Positives = 141/550 (25%), Gaps = 73/550 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A + + +S + NI N Y R+ T+ S V Sbjct: 1 MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQ----------------------QRLLQSFEALKEMM 90 + E +K L A S+ +Q + + Sbjct: 61 SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMMSGTTNTLSTTIQDLFKSLQTL 120 Query: 91 SADDHYNNSPTHYISKLRDSLESYSK------------NLSEDILGKTVIDNAEEVVQNF 138 +++ ++S + K + + N S + V + A+++ Sbjct: 121 ASNASDSSSRQAVLGKAEGLVNQFKATDTYLTNVESGLNTSVKSTVEQVNNYAKQIANVN 180 Query: 139 NTSA-------------------------REVQKIRADADKEIELEISNLRRFLSELTVV 173 A ++ + IS Sbjct: 181 QQIAKLKGAGAGSEPNDLLDKRDLLVSQLNKLVGVNVSQQDGGSYSISIGNGISLVQGDR 240 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + + +S A + D + +EI + ++ + D + + + Sbjct: 241 FEQLAAVPSSADPARTTIASVDSVTGAKTEIAESQFTSGSLGGLLAFRHDLDGVRNQIGQ 300 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + T D G+ SV D Sbjct: 301 LALALGSSFNTQHQAGVDSDGDKGEAFFKLGNPSATSNSLNKGNASLSVAYDASKTGDVK 360 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 A + + + D D K ++ ++ Sbjct: 361 ASNYKMTLENGSWNVVRLSDNSKVKDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYIIKP 420 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF----IFDPVAGINTNVTLLEYARNSIG 409 SV N+ + A +S N+N IN TL + + + Sbjct: 421 VSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYASLVA 480 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + V ++ + GVNL EE S L + +Q Y + +++ Sbjct: 481 DVGNKTSSLEATNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQTAS 540 Query: 470 KMLQTLLEGV 479 + Q+LL V Sbjct: 541 TLFQSLLTAV 550 >gi|149173751|ref|ZP_01852380.1| probable flagellar hook-associated protein [Planctomyces maris DSM 8797] gi|148847281|gb|EDL61615.1| probable flagellar hook-associated protein [Planctomyces maris DSM 8797] Length = 558 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 138/406 (33%), Gaps = 25/406 (6%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQRSEN 59 A+ +NI NA Y+R + + I+ V + + + Sbjct: 2 AKQSLEIFGTGIQVAGQNISNAGTPGYIREELVLNPSAPYRQGALITGTGVEISGIQQQI 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + +H+ ++ + E + + + ++ ++ + S Sbjct: 62 DQFLETRIHSANTDFSSIDERNTIFKQLENELR-ELTDGDLSTGLNNFLSTINNVVNQPS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + VI+ AE+ + ++ + ++R +E +S + ++ +N I Sbjct: 121 SIPDREFVINEAEKFAADISSLRLRLNELREVQSVNVENLVSEANDLIDKIVDLNPKISK 180 Query: 180 KTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 AS DA QR L ++SE+I I R++ + V+T + + + Sbjct: 181 LEASGLLQSDAGALRSQRYEALNRLSELIPIRYRERSDGAIDVFTGSDYLVLAGTSQKLQ 240 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + V + + + G++K +++ RD ++ F +QLD A Sbjct: 241 LDTDTDRGVVVHEVLLT------QTQSNISRTGGELKGIIEGRDDILGGFVDQLDTYASN 294 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 LI F++ + + A D L +S +++N + + Sbjct: 295 LIFEFNKIHASGEGTAGFQQVTSASRALDSTATLNSELSGL-----PFQANHGSFQIKVT 349 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + N + D I + + +A +N++V+ Sbjct: 350 NKSTGITNTVTVNVDLDGIGSDTTLDSLASTINGLANLNSSVSTDG 395 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/329 (10%), Positives = 99/329 (30%), Gaps = 3/329 (0%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 A ++++L+ R + ++ + + + ++ RD +L + + Sbjct: 233 AGTSQKLQLDTDTDRGVVVHEVLLTQTQSNISRTGGELKGIIEGRDDILGGFVDQLDTYA 292 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 ++ S T + ++ T+ SE + + S Sbjct: 293 SNLIFEFNKIHASGEGTAGFQQVTSASRALDSTATLNSELSGLPFQANHGSFQIKVTNKS 352 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 I + + + I + + I + + + AD N Sbjct: 353 TGITNTVTVNVDLDGIGSDTTLDSLASTINGLANLNSSVSTDGRLSISADADYEFKFSND 412 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 ++ + S + VS+ + G + ++ + Sbjct: 413 TSGALAAIGINTLFTGGDSSDIDVNSVVSQNQQFLAT---GQGAGPSDGSNAVLLAAFSE 469 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 ++L + + L ++ + L +Q + + GV++ EE Sbjct: 470 KPIDSLGGISLDNFYEKIVSNLAQSSASEGALAEGAQTFRDSLMSQREQFSGVSIDEETI 529 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ ++++ + +L+ D++ LL Sbjct: 530 NVLTYQRAFQSAARLVSTIDELFTILLNI 558 >gi|254230140|ref|ZP_04923535.1| FlgE [Vibrio sp. Ex25] gi|262394939|ref|YP_003286793.1| flagellar hook protein FlgE [Vibrio sp. Ex25] gi|151937333|gb|EDN56196.1| FlgE [Vibrio sp. Ex25] gi|262338533|gb|ACY52328.1| flagellar hook protein FlgE [Vibrio sp. Ex25] Length = 437 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 40/481 (8%), Positives = 112/481 (23%), Gaps = 57/481 (11%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57 + + + A + NI NA+ + N Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + F A+ + + E+Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNE---LTRNGAFHLNKENYMVT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D + V ++ + + E + N + Sbjct: 120 ANDEFLLGYQVDPSSGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 K T D D S I + + + Y T T Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + G + +L + + Sbjct: 225 TDKEGEKPLNVAAGDAQTPTGHVGHTMKFNNDGTLASLNN-------------GQPITSV 271 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + Q+ + + Sbjct: 272 ALGDPATNTTPVDMNGADPAQTLNFGLGSA--------------TQFAAPFELTKFDEDG 317 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ Y + N + + L + + W S Sbjct: 318 ATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ F I+ +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 Query: 478 G 478 Sbjct: 436 I 436 >gi|170703622|ref|ZP_02894363.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria IOP40-10] gi|170131468|gb|EDT00055.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria IOP40-10] Length = 665 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 57/414 (13%), Positives = 130/414 (31%), Gaps = 19/414 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS + N + N A + +NI NA Y + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L++ S G S A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I NA+ + + ++ +R + ++ +S + + +++ Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLGDQLKAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + RN++ V+ + G L Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ + +++ G + LL R + Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFTVANPAVYSNQGNTGNASLSVSFAN 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ D + + + A + + + A + N Sbjct: 357 ASQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 62/235 (26%) Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T + + V +S+ K A+ + D ++ L G + Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + + + + Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + + Y + ++ + + + TL N + + S Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNGIGNTASQLKSSSA 608 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663 >gi|152997582|ref|YP_001342417.1| hypothetical protein Mmwyl1_3580 [Marinomonas sp. MWYL1] gi|150838506|gb|ABR72482.1| protein of unknown function DUF1078 domain protein [Marinomonas sp. MWYL1] Length = 565 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 57/565 (10%), Positives = 136/565 (24%), Gaps = 94/565 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVT 54 FN A + ++ + NI NAD + + + V+ Sbjct: 2 GFNTALSGIKASADYLSVTGNNIANADTTGFKKSRIEFDDLYNTSVLGAGSGNNIGSGVS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFE----------------ALKEMMSADDHYNN 98 ++ L + + F L E + N Sbjct: 62 VSKVSQEFSSGNLSYTDNNLDLAIDGSGFFVIDAGIANAYTRAGNFKLDENGFLVTNSGN 121 Query: 99 SPTHYISKLRDSLESYSK-------NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + + + + + E + N + ++ + + Sbjct: 122 NVQGFNAVDGVVGGNLADLKIPTDRIPPEPTTSMGLKVNLDSKNEDVPPFIKAIFDPNDP 181 Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + V K + + + H +D + + Sbjct: 182 DTYNFTQTQGVVDGNGQSHIVTYYYAKGELPNTYKVHATVDGNLTDDAGLPFLAETYATF 241 Query: 212 RNNNDMVVYTSDGT-----TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-- 264 Y DG +L P + N + + T + + G +++ Sbjct: 242 NTAEGGTDYNGDGVEEAPFSLLYVGPNEPNSVDVATGTKAPLAVSGTLGGAAITATLTPE 301 Query: 265 -------------------------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + +N E+ + G Sbjct: 302 EIRDSSIVSREAFDPLNPDTYSYGNTRTTYDSLGESHTLGYYFIKQGENNTYELRVTMDG 361 Query: 300 SFSEKDPIAGNSENVPGLFIAD--------------------------GIKDLDNKLCQG 333 S DP G A ++ +D + Sbjct: 362 EESFVDPTTGEDARYLEKNTAVSFDAAGNLMGVYRGISPLGIEQPVPLEVRGIDPTNRER 421 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 I++ + + + + LI +Y + +A Sbjct: 422 ITQLDLAGSTQFALANTDTFEQNGFSAGELQGVSFDSDGLLIANYTNQQTATLGQIALAT 481 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 ++ L+ W+ S D+ + I+ V+L EL LI+ Sbjct: 482 FDSTDGLMPSGHTM--WVATKTSGPADIGRPNSATLGKIAGGALEESNVDLTAELVALIE 539 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +++Y ++K + + + QT++ Sbjct: 540 AQRNYQANSKTLETENTVTQTIINL 564 >gi|200390428|ref|ZP_03217039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602873|gb|EDZ01419.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 403 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 43/473 (9%), Positives = 100/473 (21%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + R + + T Sbjct: 97 NGQFK--------------LDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNT 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + ++ + P F ++ + Sbjct: 143 LMAAKSTTTASMQINLNSTDPV------------------------PSKTPFSVSDADSY 178 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + K K + L + + Sbjct: 179 NKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGIL 238 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + G + Q + + + K Sbjct: 239 ESGGTVDIETGEIN-------GATKATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402 >gi|222147589|ref|YP_002548546.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734577|gb|ACM35540.1| flagellar hook protein [Agrobacterium vitis S4] Length = 418 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 51/482 (10%), Positives = 117/482 (24%), Gaps = 66/482 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59 MSL N A + + + +++ N+ N+D Y R T ++ + T S Sbjct: 1 MSLSGSMNTAVSGLQAQASKLSTVGDNVANSDTTGYKRVSTAFSSLVVGSSGSGTYNSGG 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNL 118 + + + S + Y N Sbjct: 61 VQTTTVNSISEEGSYQSSTSETDLAIKGDGYFVVQDEAGSVFLTRAGDFKADDNGYMVNS 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + L +N E A + +I+ + + L N Sbjct: 121 AGYTLLGYSYENGEP--------ASVINGFEGLEPVKIQDNSISANATTNALIEGNLKSS 172 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 S ++++ ++ Sbjct: 173 EPIVSGDLPDSNSAS-----------------------ATWSFKSSMVAYDSLGNANQYD 209 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + T +E + G + + DS Sbjct: 210 IYYTKTADNEWQADIFRTSEATDETNFPYTNGVLGSTTLTFDSD---------------- 253 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 ++ + ++ + + + + + SV+ Sbjct: 254 ------GTVSSGGTFTFTDSTTSAPQTIEVDMSTMTQLNSANSSEGDVDGNGASAASSVT 307 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N+ N Y + D + +N + + + Sbjct: 308 VNSSGNIVATYQDGSTANLYKVALATVASPDNMKSVNGT-----------AYQVTADAGT 356 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F I+ T V+L EL+ +I+ ++SY+ ++K+ ML TL+ Sbjct: 357 VVVGFANTGSFGSINSKTLETSNVDLATELTNMIQSQRSYSANSKVFQTAADMLDTLISL 416 Query: 479 VK 480 + Sbjct: 417 KR 418 >gi|218549196|ref|YP_002382987.1| flagellar hook protein FlgE [Escherichia fergusonii ATCC 35469] gi|218356737|emb|CAQ89365.1| flagellar hook protein [Escherichia fergusonii ATCC 35469] Length = 401 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDIAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T A++ Sbjct: 116 LTGYPAAGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTAAMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T T + Sbjct: 160 SSDPLPTVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTKDNTWQVYTQDSSDAA 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + F ++ + + + G I Sbjct: 220 SQATQATTLEFNANGMLVKGETANITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------AVPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQASGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|126444045|ref|YP_001061246.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134280998|ref|ZP_01767708.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|167725930|ref|ZP_02409166.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167905090|ref|ZP_02492295.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|254182894|ref|ZP_04889487.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] gi|254299686|ref|ZP_04967135.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|125657218|gb|ABN48706.1| flagellar hook protein FlgE [Burkholderia pseudomallei] gi|126223536|gb|ABN87041.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134248020|gb|EBA48104.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|157809637|gb|EDO86807.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|184213428|gb|EDU10471.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] Length = 395 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 38/474 (8%), Positives = 102/474 (21%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N + Q +I NI NA+ + Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMV------------------ 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 G Q ++ + + + + + + +K+ +L Sbjct: 44 --------AGTQANGTYIGSITQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSMLFT 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + ++ + + Sbjct: 96 RFGYFQRDADGYIVDGFGRRAQGYGASGAYGDIRVPTDTEPAKASDSLEYVGNLSADWAA 155 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D+ D S + + + + Y G Sbjct: 156 PKNPNFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVIA 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G G++ A D + Sbjct: 204 YYAMDGEIVGGNTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I Q + + + + Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGETTTTVNRDNGYAAGVPGE 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L ++ Y + + +A L W S + + Sbjct: 284 VMLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLSAVGD--TAWRASAASGNPLIGSAG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ +EL ++ +++Y ++K++ ++M+Q L++ + Sbjct: 342 SGALGKVVAGSLELSNADVTQELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395 >gi|288962673|ref|YP_003452967.1| flagellar hook protein [Azospirillum sp. B510] gi|288914939|dbj|BAI76423.1| flagellar hook protein [Azospirillum sp. B510] Length = 427 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 58/488 (11%), Positives = 116/488 (23%), Gaps = 69/488 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTV 52 MSL + + S + A+I NI N+ Y R + + + Sbjct: 1 MSLYSAMRSGVSGMAAQSSRLAAISDNISNSQTVGYKRATVDFSTLVTAPGDRTSYSASG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V + D L S+ F + + Y Sbjct: 61 VQSNLHYQMQQDGTLLGTGSSTDMAISGDGFFVVGNRATGTPDYA---LTRAGSFLPDDG 117 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + +N + L +D + + ++ + Sbjct: 118 GFLRNTAGQYLQGWKLDPNGNLG---------------AVNTTRFDDLKTINVGNLAYGG 162 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 T + + I N +V S T Sbjct: 163 SRTTKMGLTGNLPAQATAGTNFTTTTTFYDSLGEAKDIQLNWKMIVPPDSAATPTPIDGK 222 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ +YTVT Sbjct: 223 WELTVTPPGNYTVTPTG----------------------------------------PQS 242 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + +G + + F + + + Q R + + Sbjct: 243 ITFASVGPNAGMMVDGSGNPLGSLPFTITSQTSTTSPTPDSFTLNVSDITQLRGDYVP-Q 301 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 +K N+ G L Y + + PVA + L A+ + Sbjct: 302 ITADGAKAGRVTSVNVDGTGKLWALYDNGARQALYQVPVANVTNPDGL--VAQTGNTFTL 359 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + L + + S V++ EL LI+ +++Y+ S L+ TD+M+ Sbjct: 360 GRDSGTLTLSAGNSGKAGSVVGSALEQSNVDIATELVSLIETQRAYSSSATLVRTTDEMV 419 Query: 473 QTLLEGVK 480 + + Sbjct: 420 EETTRLKR 427 >gi|291558205|emb|CBL35322.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 503 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 41/505 (8%), Positives = 117/505 (23%), Gaps = 47/505 (9%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISP--------------ENVTVVTQRSENKNMFDKV 66 I NI N + + T V K Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + S + + D N + + +++ Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNMVLGV 120 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRRFLSELTVVNDAIKFKTAS 183 D + + + + +A + + ++ + I Sbjct: 121 SGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGGTYPLTVSADTATPDGNISVGFTV 180 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS- 242 + ++ +++Q + + + + G ++ +P + + Sbjct: 181 GESDYAYMSGNKLVVQLNEKNDYTNLNDLEDAVTRACENGGVSIEGVLPLHFELDTVPPA 240 Query: 243 --YTVTSESNPIFIDGVVVSSNQG------------------------SAVPKGKIKALL 276 T+ +N + +D ++ K L Sbjct: 241 ADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLRYSKNAADTTAKWSDNGLT 300 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + Q + + + + G D L G + Sbjct: 301 ISVCPGATVADIQAAVDKAAGSNEKYQLKVTSTDWDAANGALETLLATDGKVGLAGGSNN 360 Query: 337 TICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 Q N + + + + + + + Sbjct: 361 FFSDMVQLLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGVHSVHGIIMLGRIDIVTFD 420 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L + + W E S +++ + + V+L +E S +I + Sbjct: 421 NPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQ 478 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++++I +D ML+ ++ + Sbjct: 479 RGFQANSRIITTSDTMLEEIVNLKR 503 >gi|292670487|ref|ZP_06603913.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] gi|292647897|gb|EFF65869.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] Length = 506 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 53/510 (10%), Positives = 120/510 (23%), Gaps = 54/510 (10%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS-----------------------PENVTVVTQRS 57 I NI N + + V+V Sbjct: 1 MDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAASPGTTIGGTNPKQVGLGVSVGGI-- 58 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-------------THYI 104 + D + + + +K N + ++ Sbjct: 59 -DTIFSDGSVQSTGKNTDLALTGNALFVVKRGDQTYYTRNGAFEFDAKGNYVLPSSGLHV 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + SK +E VID + + + + A+ S+ R Sbjct: 118 QGWMNKTTNNSKVSTEGAAENIVIDAGRIMGPEQTDTVSYSENLDANTPIITGYSFSDPR 177 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + + TAS+ S I + Y S G Sbjct: 178 TTPPTPHARTTSGMYITASQAQPVTLSLSDGTKQTVTSGTYTIGRSMPKVTSFGYYDSSG 237 Query: 225 T--------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 T+ + K S + NP + ++ + Sbjct: 238 NKHEGLLILEKADSRTVTYQDADGNSVTKRASTWIARVGNPTARNTGGSTTTHTLSSATL 297 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +R V+ L + + ++ NS + Sbjct: 298 AFDENGVLRAGVLGGTSPNLTHDTDSPVTPPAVPPAVSANSIENATFTATHSNAVSSPQS 357 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + ++ + ++ + Y + + Sbjct: 358 ITVQFANNESPLTQYAGYDTVKAAANGYASGSLASVSVDSTGVITGTYTNGVRRAEAQIG 417 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 VA + L + + + S I+ S V++ ++ S Sbjct: 418 VAKFSNPSGLTKIGGSLYQESNNSNSKVVRAQTVESTGAK-ITPSALEMSNVDIADQFSD 476 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I ++ + ++K+I D+ML+TL+ + Sbjct: 477 MIITQRGFQSNSKVITVGDEMLETLINMKR 506 >gi|207728352|ref|YP_002256746.1| flagellar hook-associated protein 1 [Ralstonia solanacearum MolK2] gi|206591598|emb|CAQ57210.1| flagellar hook-associated protein 1 [Ralstonia solanacearum MolK2] Length = 642 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 130/407 (31%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + +A Q + S N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTGFFNAADS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + ++ VY +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S VS + S + G + L+Q R + + QN + Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSVG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSIAAPSVAPSSSNTGTGALTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGSQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSVGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + N+ Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSIAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T + Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + + + + + + + + + + L Sbjct: 423 TLTADYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAINLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + N ++ N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSQASANLTSQKSLLASSTAQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y + K++ + + +LL Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639 >gi|163744346|ref|ZP_02151706.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] gi|161381164|gb|EDQ05573.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] Length = 422 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 52/485 (10%), Positives = 120/485 (24%), Gaps = 68/485 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + S + +I NI NA+ Y R + Sbjct: 1 MSITSALQIGVSGLQANSSRVQNISSNIANANTVGYRRTFSEFVT--------------- 45 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 G + + + + + + T ++ D S+N ++ Sbjct: 46 -----------QNTGSTQAGVLTDVRANISTNGNIVGTNSTTDLAVQGDGFFVVSRNAND 94 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 I + A N ++ Sbjct: 95 PIESNYYLTRAGSFT-----------------------------------PDQNGDLRNS 119 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + +ST+ + + S + VP Sbjct: 120 AGYFLSGFPTDAAGNTGSVSSTSYNDLSTVNIASYQVQGTPSSSVGVSGNVPAQETGPGT 179 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 S + G + + + I D + + + Sbjct: 180 TGTAFESTLRYVNQLGGSDALTLSWTPGAVDNEWTVSITDEAGTNYGDATVNFTDSGADA 239 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKL-----CQGISETICVNPQYRSNPSFLRDGG 355 S G P + G T Q+ + + Sbjct: 240 GSPASYTPGTLPIDPATGVVTLSITNGGTPQALEIDFGAPGTFGGMTQFSGDYTPPAFTD 299 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ ++ L + + + P+A + + + ++ Sbjct: 300 DGTETGSLERAEMSDSGVLFGVFDNGQRRALFQVPLANVANPDQMRSV--DGNAYVATRD 357 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + L I+ + V++ +EL+ LI+ +++Y+ S K+I +D+ML Sbjct: 358 SGAVSLGNPMLNGLGSINSNALEGSNVDIAQELTDLIQTQRAYSSSAKIITTSDEMLSET 417 Query: 476 LEGVK 480 L + Sbjct: 418 LNIKR 422 >gi|172061965|ref|YP_001809617.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria MC40-6] gi|171994482|gb|ACB65401.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria MC40-6] Length = 665 Score = 110 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 58/414 (14%), Positives = 129/414 (31%), Gaps = 19/414 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 MS + N + N A + +NI NA Y + P+ V Sbjct: 1 MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 VT + + L++ S G S A + I+ Sbjct: 60 NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + N S+ + +T I NA+ + + ++ +R + ++ +S + + S++ Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTSQI 177 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N I ++ + +DQRD+ + +S + G+ + RN++ V+ + G L Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236 Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + S+ + +++ G + LL R + Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q QL +A + ++ + + PG + Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFAVANPAVYSNQGNTGNASLSVSFTN 356 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + D + + + A + + + A + N Sbjct: 357 AAQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 62/235 (26%) Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T + + V +S+ K A+ + D ++ L G + Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQTG 488 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + + + + Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + + Y + ++ + + + TL N + + S Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLKSSSA 608 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663 >gi|302343058|ref|YP_003807587.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639671|gb|ADK84993.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 452 Score = 110 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 41/475 (8%), Positives = 110/475 (23%), Gaps = 27/475 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 F + + SQ + N+ N++ Y + Sbjct: 4 TSFFNGVSGLKSFSQGLNIVADNLANSNTYGYKSSRAEFADVLY---------RELSYTG 54 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L +GQ + S + + + + + ++ L G Sbjct: 55 SDLTTEIDQVGQGATVWSHQLMNQGAIQETGRTLDLAIDGNGFFTVKNLDTEELYYTRAG 114 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + +D + + + E + NL + + Sbjct: 115 QFGVDGVVGQEGFIIN-DQGYRLQGFAIGDDGEPIVGNLIDLQIPVENLPGEATTIVGLG 173 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + + + + ++T + S TT+++ Sbjct: 174 VNLNPADTRVNQ----------VATDIDPEVSGTYNYSSSTTVYDANGDTHQISVYYQRV 223 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V ++ ++ + + Sbjct: 224 DDYAGTVPEGGQTVWKASTFETQDGEQVA-------NPADPANTFYLHFTDTGALAGVTD 276 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 A S + GL + G Q S + + Sbjct: 277 STGATVSADSIGLTMDFGEAGQQAITLDFAPAAGQATTQVAEGYSTSTNTQDGFAEGGLE 336 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 ++ + +Y + + + + L N + Sbjct: 337 SVAVSEDGFVTAYYSNGEMVDVGVVALTTFASPGNLRREGDNLWAYDADAGEIWVGQPTD 396 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + I + T V+ E+ +I ++++ S+K + +D+M++T + Sbjct: 397 EEFAMGAIEDQSLETSTVDTATEMMNMIIYQRAFQASSKTVTTSDEMIKTAINMK 451 >gi|296283217|ref|ZP_06861215.1| flagellar hook protein FlgE [Citromicrobium bathyomarinum JL354] Length = 412 Score = 110 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 58/468 (12%), Positives = 117/468 (25%), Gaps = 64/468 (13%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSENKNMFDKV--LHAHSS 72 A++ NI N + Y + + + + + M K L A SS Sbjct: 1 MATVADNITNINTVGYKGAEADFRTLVTDGRLKSSYSAGGVAAAPRAMISKQGLLQAASS 60 Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 F + AD R + Y +N L +D Sbjct: 61 QTDLGIDGGGFFVTRTGSGADSGIA---FTRAGAFRPDEQGYLRNTGGYFLQGWRLDTTG 117 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + + +N + + Sbjct: 118 GYTST--------GGVSELEPVRLSGLTGTATATTRLTARINLQSTQEPFTGA-YAAGDM 168 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 L S I + + + +T P E + +N + Sbjct: 169 ATGALEPHFSRTFEIFDAQGGGHQVTMG------FVKTGPNQWVSEIYGDPADVTAANGL 222 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G V + GS AL Sbjct: 223 LASGNVAFNPDGSLDLANSSPALF------------------------------------ 246 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + A+ L G + + Q+ S+ + + ++ Sbjct: 247 GTLNVSWANQAGSSPINLNLGSQDGLDGLTQFGSSSALIASSTDGGMLNNLVSVEVSKDG 306 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + D ++ P+A L N + +S + + ++ I Sbjct: 307 IVSAVFDDGTSRPVFQLPMATFANPDGLSRLPGN--AYTVSQQSGNVAIGRPGELGSGTI 364 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S V+L +E + +I+ +++Y+ S+K+I D MLQ + + Sbjct: 365 SAGTLEASNVDLAQEFTNMIRFQRAYSASSKIITTVDDMLQEVSALKR 412 >gi|255030434|ref|ZP_05302385.1| flagellar hook-associated protein FlgK [Listeria monocytogenes LO28] Length = 435 Score = 110 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 62/446 (13%), Positives = 138/446 (30%), Gaps = 42/446 (9%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + N P+ + + + +KN + Sbjct: 3 LTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQAT 61 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ + N ++++ + + I +L + +L +N AI A Sbjct: 62 NTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GNA 119 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +D L+QRD LL ++ GIS NN V + G L Sbjct: 120 GSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS--- 176 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T T+ +DG ++ +P+G I A +++ + + +Q +++ + L + Sbjct: 177 -TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNGLAKALD 229 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------QYRSNPSFLRDGG 355 + N I D ++ N + + + + Sbjct: 230 DIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTIGGVD 289 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------------------ 397 + I + S K + + N Sbjct: 290 HPVDTLGTSTYVTDVNDFSIPIFAQSSGKWILNPAITSNADNKPFLGVIAADIASLKTDK 349 Query: 398 ----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 T + I + + S S + ++ES S+ GVN+ EE++ +++ Sbjct: 350 NIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQ 409 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 + Y + K + + M++ LL + Sbjct: 410 YQSYYVANTKAMNTVNDMMKALLAML 435 >gi|188592117|ref|YP_001796715.1| flagellar hook protein flge [Cupriavidus taiwanensis LMG 19424] gi|170938491|emb|CAP63478.1| FlgE: Flagellar hook protein [Cupriavidus taiwanensis LMG 19424] Length = 414 Score = 110 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 46/473 (9%), Positives = 110/473 (23%), Gaps = 60/473 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+ I NI NA+ Y + + N + Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNS--VVQ 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + L + + + + N+ + Sbjct: 60 SFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQVTG 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 A ++ A I + ++ Sbjct: 120 YPAGVAGGAGVQPQPLVISNAQMEPRATSSIT-------------AKFQLDSRATVPTQA 166 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + S I + + N ++ Y + + Sbjct: 167 FASSAGSPPTSNMFNYSTAINVYDSLGNKQQLMAYFAKVADSAVAPVHPTVAGGTDWQMY 226 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ N + G V+ + Sbjct: 227 VTDVNGNAVGGAPVTLAFDN---------------------------------------- 246 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 AG ++ + ++ + + Q+ ++ + + Sbjct: 247 --AGALQSPAAGAVTLTQPAVNGAQAMAMKLDLSGTTQFGADNDVKQLSQNGYTSGSLLG 304 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ G + +Y + K +A L N W S L + Sbjct: 305 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNV--WSATGSSGQPLLGVAG 362 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +L LI +++Y + + I D ++QTL+ Sbjct: 363 -GSLGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 414 >gi|157164728|ref|YP_001466716.1| flagellar hook-associated protein FlgK [Campylobacter concisus 13826] gi|157101468|gb|EAT97207.2| flagellar hook-associated protein FlgK [Campylobacter concisus 13826] Length = 623 Score = 110 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 47/408 (11%), Positives = 114/408 (27%), Gaps = 16/408 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + + N A Q ++ NI NAD+ Y R+ + + S V Sbjct: 4 IFMSLGTGVSGLNAAQVQISTTGNNITNADSNYYTRQRVVQSASPAMNTVPGGVGTGTQV 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L SS + Q D +N I + + Sbjct: 64 DTVTRLHDEFAYSRLKYSSSNLENTGYKQRILQEATKYF-PDLKDNGMVKDIQEYFAAWN 122 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 +++ N E +I+ A + + N S++ + + D+ I++ I+ + ++ Sbjct: 123 NFASNPDEGAQKVNLINKASVLTASINRSSKMLYDMHTQIDETIKININEINSLGKQIAN 182 Query: 173 VNDAIKFKTASKH-----DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +N I+ + +A+D D+RD L +S+++ + + + + Sbjct: 183 INKQIQRVESGADAGIKINANDLRDKRDELELAMSKLVNTAVYKSDLKSESRIDTGISDQ 242 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +I + E + + + +I +I + + Sbjct: 243 GRYYNLNIGGVSIVDGVNFHEISMSSTESGQYTKIYYEREDGRRIPMEEKITNGKIGAAL 302 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + FS+ + ++ Sbjct: 303 DLRGRNYEPDNDKFSDGIIQKYIDNLNTFSKTLITSTNNVYAESAVEISNSDPISYLEND 362 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + S+ + + + + D G + Sbjct: 363 KTLMNHDNSIRNGSFEAIVYDNKGNVVAKKTIEINGTTTMNDTKYGNS 410 Score = 93.2 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 91/290 (31%), Gaps = 5/290 (1%) Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR----DINFEKMNSYTVTSESNP 251 L+ + + S + +N+D + Y + TL ++ Sbjct: 334 TLITSTNNVYAESAVEISNSDPISYLENDKTLMNHDNSIRNGSFEAIVYDNKGNVVAKKT 393 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 I I+G ++ + ++ + + D + Sbjct: 394 IEINGTTTMNDTKYGNSVVQDFNSNSDDNNDNNMLNDVDDFFEASYFYDKNTHQGTFALI 453 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + I D + + + ++ K K + G Sbjct: 454 PKQAQGLYSISIVDHGTNFPGVVGINRFFSGTNSNTIGINQNFTQDHTKLRAYSKPVVGN 513 Query: 372 PDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ N + F ++ + T+ Y R + + ++ +H + + Sbjct: 514 NEVANKMIQLQYQKQTFYSSGTALDRDETIEGYYRYFTTDMASDTEANNTIHDTNTSLQR 573 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +T GV+ EEL+ LI+ + SY + K+I D+ML TLL + Sbjct: 574 TAEEEFQSTSGVDTNEELTNLIRFQASYGAAAKIITTVDQMLDTLLSLKQ 623 >gi|254504553|ref|ZP_05116704.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii DFL-11] gi|222440624|gb|EEE47303.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii DFL-11] Length = 631 Score = 110 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 61/413 (14%), Positives = 131/413 (31%), Gaps = 16/413 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54 M L + N A + +Q NI NAD Y ++ + + Sbjct: 1 MGLTSALNTAVFGISFNQRQIDVTASNIANADTAGYSKKTVSANAYFDGDGNVAGIVTNE 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + +F + + +S + +L +L S Sbjct: 61 ISRIINEEIQSDYFNSLADTNYGKQIAAFTDRLDDIFGTIGDQSSLSALAGELTGALSSL 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ A+ + + NTS +++ +R +AD+ + + + LS + ++ Sbjct: 121 VNQPGNYAAQQEVVAAADAMARELNTSYQQIADLRQEADEALARQTETVNSLLSNIESID 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 AI+ T + + + D+RD L++++S + ++ N + + T +G LF Sbjct: 181 AAIRDATQAGVSSSEMEDERDRLVEQLSGYLDLNVSKTTTNTLFIQTKNGQPLFSDGEAA 240 Query: 235 INF----------EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 ++ N+ T+ F +S + G + A +++RD V+ Sbjct: 241 TLAFQSTNRLGADQQGNAIVATTAGGAQFDIVPAGASGRDRTTGTGLMVATMELRDDVLI 300 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 Q QLD +A L +FS + + P + L + + T Sbjct: 301 EAQKQLDTIAAELSLAFSNVTQASTAATVGPDTGFDLPVSGLQSGNTINLEYTDSAGQSQ 360 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + D + + G Sbjct: 361 TITLMAVSDPTLLPLANTATTNPNDTVVGIDISSGTPATYITNIIAALGTAAP 413 Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 51/446 (11%), Positives = 132/446 (29%), Gaps = 10/446 (2%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTH 102 + V+ E + +++ + + F K + +D Sbjct: 186 ATQAGVSSSEMEDERDRLVEQLSGYLDLNVSKTTTNTLFIQTKNGQPLFSDGEAATLAFQ 245 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 ++L + + + + I A ++ T + D + Sbjct: 246 STNRLGADQQGNAIVATTAGGAQFDIVPAGASGRDRTTGTGLMVATMELRDDVLIEAQKQ 305 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 L +EL++ + + + D V + I + + Sbjct: 306 LDTIAAELSLAFSNVTQASTAATVGPDTGFDLPVSGLQSGNTINLEYTDSAGQSQTITLM 365 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV-------SSNQGSAVPKGKIKAL 275 + + N V + + + ++ V L Sbjct: 366 AVSDPTLLPLANTATTNPNDTVVGIDISSGTPATYITNIIAALGTAAPDLQVSNDGSDNL 425 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + DS ++ ++ + S + + + +N + Sbjct: 426 RILGDSTTVPNATTVESLSANITPSATTDQGLGLSIFVDQRNGTETFTDAPENGGQRVGY 485 Query: 336 ET-ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 I VNP ++ S L D + N A Y ++ + Sbjct: 486 ANGISVNPALLADSSLLVDYQTTPAANSENDPARAQYLLNALTNETAYFDPEAGMGSSSS 545 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 T+L+Y ++ + +D+ + + +++ Y + VNL E++FL+++ Sbjct: 546 PFQGTVLDYINQTVAYQGNQAADAKTYSDSKEALTLNLAVRYEESYSVNLDAEMAFLVQL 605 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 E +Y+ + +++ + ++Q LL V+ Sbjct: 606 ENAYSANARVMQTINDLMQELLNVVR 631 >gi|291532057|emb|CBK97642.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3] Length = 503 Score = 110 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 41/505 (8%), Positives = 115/505 (22%), Gaps = 47/505 (9%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISP--------------ENVTVVTQRSENKNMFDKV 66 I NI N + + T V K Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + S + + D N + + +++ Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNMVLGV 120 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SK 184 D + + + + +A + L+ + + Sbjct: 121 SGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGSTYPLTVSADTATPDGNISVGFTV 180 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI----NFEKM 240 ++ + L+ +++E + + + + +G + V Sbjct: 181 GNSDYAYMSGNKLVVQLNEKNDYTNLTDLEDAVTRACENGGVSIDGVLPLHFELDTVPPA 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQG------------------------SAVPKGKIKALL 276 T+ +N + +D ++ K L Sbjct: 241 ADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLRYSKNAADTTAKWSDNGLT 300 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + Q + + + + G D L G + Sbjct: 301 ISVCPGATVADIQTAVDKAAGSNEKYQLKVTSTDWDAANGSLETLLATDGKVGLAGGSNN 360 Query: 337 TICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + N + + + + + + + Sbjct: 361 FYSDMVELLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGIHSVHGIIMLGRIDIVTFD 420 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L + + W E S +++ + + V+L +E S +I + Sbjct: 421 NPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQ 478 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++++I +D ML+ ++ + Sbjct: 479 RGFQANSRIITTSDTMLEEIVNLKR 503 >gi|83718065|ref|YP_438389.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|167614837|ref|ZP_02383472.1| flagellar hook protein flgE [Burkholderia thailandensis Bt4] gi|257141422|ref|ZP_05589684.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|83651890|gb|ABC35954.1| flagellar hook protein flgE [Burkholderia thailandensis E264] Length = 395 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 39/474 (8%), Positives = 102/474 (21%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N + Q +I NI NA+ + Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMV------------------ 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 G Q ++ + + + + + + +K+ +L Sbjct: 44 --------AGTQANGTYIGSITQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSMLFT 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + ++ + + Sbjct: 96 RFGYFQRDADGYIVDGFGRRAQGYGTGGAYGDIRVPTDTEPAKASDSLEYVGNLSADWDA 155 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D+ D S + + + + Y G T Sbjct: 156 PKNPTFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVTT 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G G++ A D + Sbjct: 204 YYAMDGEIVGGSTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I Q + + + + Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGETTTTVNRDNGYAAGVPGE 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L ++ Y + + +A L W S + + Sbjct: 284 VTLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLTAVGD--TAWRASAASGNPLIGSAG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ +EL ++ +++Y ++K++ ++M+Q L++ + Sbjct: 342 SGALGKVVAGSLELSNADVTKELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395 >gi|238785497|ref|ZP_04629480.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] gi|238713599|gb|EEQ05628.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] Length = 419 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 62/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + + F +++ + + + N+ Sbjct: 62 NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIFYARNGQFKLDADRNIINMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L I + + T Sbjct: 116 LTGYPA-------------------------TGTPPTIQQGANPIPLSIPQDMISAKATT 150 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + D++ + N+M + + G V E + Sbjct: 151 SGSMVANLTSTHDIVPATPAFDPDKPATYSFVNNMTTFDTLGNRHEINVFYVKRTESSTA 210 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ ++ AL + + P Sbjct: 211 GNSWDVYTRDSSANPAQTAALRGSMQFDTNGALSTVTNGANPASTTDFTL---------- 260 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 Q S + + Sbjct: 261 ----------------TIPMGVVNGATAAPFTLSVAGTKQQNTGTDSIVSQNQTGYAAGE 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ Y +S + +A L N W E S + L Sbjct: 305 FTGFQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNV--WKETLASGNPMLG 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 363 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 418 >gi|222147375|ref|YP_002548332.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734365|gb|ACM35328.1| flagellar hook protein [Agrobacterium vitis S4] Length = 411 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 56/480 (11%), Positives = 108/480 (22%), Gaps = 69/480 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N + + S + SI NI N Y +T + T T Sbjct: 1 MSLASAMNSSVSGLTAQSNKLTSIGDNISNTSTTGYKGTETAFSSLVNGGTTSTT--TQT 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 L + SS + +++ + + Y N S Sbjct: 59 VSQSGDLESTSSETDLAIDGDGYFVVQD------DEGDVFLTRQGDFEIDEDGYLVNSSG 112 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L DN E E KI + L V Sbjct: 113 YTLLGYSYDNGEPASVINGFDGLEPVKIDTSEVTASATTTGEVSGNLESDEEVVSGDTPS 172 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S ++ ++ Sbjct: 173 SNSADATFTA-------------------------------KSSIVTYDEQGASTQYDIY 201 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T E + + L + Sbjct: 202 FTKTDDDEWEVSIYRNDEANDDDDGT----------------------SFPYDNGELGST 239 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D + + T + + + + S Sbjct: 240 TLTFDSAGELEDGSTSTLSFTDSETGLTIDLDFSDITQT------ATSTSIEGSANGSAA 293 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + D + +A + + L E + S + Sbjct: 294 SSSSDYTIGSDGVISTVSSDGTTTDTYKIALATVASPDNLEEVGG--TAYKVDADSGTVV 351 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F I S + V+L ELS +I +++Y+ ++K+ ML T++ V+ Sbjct: 352 VGFAGTGSFGTIESSTLESSNVDLASELSDMIAAQRAYSANSKVFQTAADMLDTVINMVR 411 >gi|218689029|ref|YP_002397241.1| flagellar hook protein FlgE [Escherichia coli ED1a] gi|218426593|emb|CAR07421.1| flagellar hook protein [Escherichia coli ED1a] Length = 401 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTLDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +F V++SN + + G I Sbjct: 220 GTANPATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|160939658|ref|ZP_02087006.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC BAA-613] gi|158437449|gb|EDP15213.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC BAA-613] Length = 550 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 42/550 (7%), Positives = 109/550 (19%), Gaps = 83/550 (15%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------NVTVVTQRSENK 60 + I NI N + + T +Q Sbjct: 1 MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATGGDNNKGGTNASQVGYGA 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE-SYSKNL 118 + L+ SA+ E + + L+ + Sbjct: 61 QLAGVDLNMGRSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDNNSGNLVDA 120 Query: 119 SEDILGKTVIDNAEEVVQNFN-----TSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + D + Q + IE I++ + + Sbjct: 121 NGYTVLGVTGDPLGKAAGADKIHLSIPGKNNAQSANSQTINGIEYTITSQNTTSAANVTI 180 Query: 174 NDAIKFKTASKHD----AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D + + D + + I + + + + ++ Sbjct: 181 SFRLDDTLPDGADIVVKSGELKDSSITVSVNKNAIFTSLSDFNSKMNAAITRANNGKAHP 240 Query: 230 TVPRDINFEKMNSYTVTS--------------ESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 I + TS F D + + Sbjct: 241 AGDFTITAVPADKIFKTSLTGEELLGENFGIKAGVQKFTDAADIKDGIFGGLKPSSTSTE 300 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + S ++ L ++ K + + + Sbjct: 301 PKFTASGKVSYEMTLQAATDTEPAAWIIKATVESDDGSKRYFTGKVSENSTSANSVWLKE 360 Query: 336 ETICVNPQYRSNPSFLRDGGSVS--------KKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + L+ G + ++ N Sbjct: 361 DGTTPLNDQPGQYIELKHPGYAAINDACKDLATGDLTKTDVGTITAATNSNDLGLKSKNF 420 Query: 388 FDPVAGINTNVTLLEYARNSIGW------------------------------------- 410 +V L + Sbjct: 421 TLTNGSEGGDVALSGVGVTILSNGIIEATHPDLGKIQIGRIDLVTFDNPYGLEGVGNSYF 480 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S L + + S V++ E + +I ++ + ++++I +D Sbjct: 481 KTTANSGDPKLCQAGENGTGALKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDS 540 Query: 471 MLQTLLEGVK 480 +L+ L+ + Sbjct: 541 ILEELVNLKR 550 >gi|83747648|ref|ZP_00944684.1| FlgK [Ralstonia solanacearum UW551] gi|207739731|ref|YP_002258124.1| flagellar hook-associated protein 1 [Ralstonia solanacearum IPO1609] gi|83725700|gb|EAP72842.1| FlgK [Ralstonia solanacearum UW551] gi|206593113|emb|CAQ60019.1| flagellar hook-associated protein 1 [Ralstonia solanacearum IPO1609] Length = 642 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 130/407 (31%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + +A Q + S N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTGFFNAADS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + ++ VY +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S VS + S + G + L+Q R + + QN + Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSVG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGSQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSVGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + N+ Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T + Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + + + + + + + + + + L Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAINLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + N ++ N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSQASANLTSQKSLLASSTAQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y + K++ + + +LL Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639 >gi|332187911|ref|ZP_08389644.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] gi|332012072|gb|EGI54144.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] Length = 430 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 49/483 (10%), Positives = 119/483 (24%), Gaps = 66/483 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55 F + + + + I N+ N + + + + Sbjct: 2 SFYTSLSGLQASQTDMSVISHNLANVGTNGFKKSRAEFADVMAANFSTDPFKQVGSGTVV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ + + + S+A+ F ++ A + +Y Sbjct: 62 KANRQEFKEGNYTSTSNALDLAISGDGFFTVQ----AGGTTGTLNYTRNGSFQVDTNNYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L +D V N +Q +++ Sbjct: 118 TDTQGNRLQVFPVDKDGNVTSFGNDGLTSLQLPPTSGTPVATKKVTLDINL--------- 168 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 +++ D+ ++ + I N + Y + + +P D Sbjct: 169 -----SSTATAPTGAFDRTNMGTYNNTTQTKIFDTSGNAMTLTNYY-----VRKPLPVDA 218 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N + +S G +Q Sbjct: 219 NGNAVQPADGSSTWLVYSYVG-------------------------------DQQMTTNG 247 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 AGN D + + Q ++ + Q S S Sbjct: 248 GSTAPVEMTFNAAGNMTTPAAPVAFDNFTPRTSVISQPLTVDYRGSSQSGSIFSVNSRTQ 307 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 L + ++ + + + VA L + + W Sbjct: 308 DGKAVGLLSGVSVGEDGLITASFSNGETAALGKVAVATFVNMPGLRQEGNSY--WEATGM 365 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + ++ + I S V++ EEL LI ++++ + K + + ++ QT+ Sbjct: 366 SGAAKFGTANEGAYGAIRSSTIEGSNVDITEELVNLIAAQRNFQANAKALDTSSQISQTI 425 Query: 476 LEG 478 Sbjct: 426 FNI 428 >gi|301023263|ref|ZP_07187060.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] gi|300397108|gb|EFJ80646.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] Length = 401 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S +N T+F++ + Sbjct: 166 SVKA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D + A+ L A ++ S Sbjct: 202 KTGDNNWQVYTQDSSDPTGTADHAMT---------------------LVFNANGVLTSNP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ G + Q + + + K Sbjct: 241 TENITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|254559637|ref|YP_003066732.1| flagellar hook protein flgE [Methylobacterium extorquens DM4] gi|254266915|emb|CAX22714.1| putative Flagellar hook protein flgE [Methylobacterium extorquens DM4] Length = 460 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + S ++I NI N+ Y R DT + +Q + + Sbjct: 1 MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60 Query: 61 NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109 + + Q F A+ + + + Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D I A I + + + Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + DA V + +S + T++ Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + +++ D + + ++V NQ Sbjct: 234 ASGAPVSVQSRWAKVAAADTGAGTSDTWNLFTADKTSVNG------------------NQ 275 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +FS + + + + +S + + Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGAVTLDLSGGLTQYAAASGTVT 335 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + N + + Y + VA L + Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVDVAQFVNPDGLKP--DSLGN 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + +K V + ++ E S +I +Q+Y+ + +++ Sbjct: 394 YQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449 Query: 470 KMLQTLLEGVK 480 M+ LL ++ Sbjct: 450 TMISDLLNVIR 460 >gi|289606849|emb|CBI60984.1| unnamed protein product [Sordaria macrospora] Length = 336 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 93/292 (31%), Gaps = 16/292 (5%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPE 48 MS + + + + + NI NA YVRR T + Sbjct: 35 MSEERMSDLLSIGASGVRAYQSALTTTSDNIANAGTTGYVRRTTSLAEVGVGSSRQITGS 94 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 VTV + + +S + + + A E + + T ++ Sbjct: 95 GVTVTGVARSADIYRSQEVRQSNSDVSRSDGGIVWMARIEDAL----TSRALTDRMTAFF 150 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 +S + S + S D +++++ AE V Q F+ + + + A+ + +S L + Sbjct: 151 NSATTLSADPSADAPRRSMLEAAESVAQAFSGTIGALDETAANLALNADNAVSKLSNNAA 210 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L +ND + + LDQRD +L ++SE+ I + V Sbjct: 211 VLARINDGLSRVSKGSAGEAQLLDQRDRMLDEMSEMTDIDVNFDTTGRVTVRAGGADGPL 270 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + + + G G + +I D Sbjct: 271 LVHGIEASTVRFERDEDGAPVFTTMRGGTETILIPRGGSLAGMVDGAKRISD 322 >gi|82702453|ref|YP_412019.1| flagellar hook protein FlgE [Nitrosospira multiformis ATCC 25196] gi|82410518|gb|ABB74627.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 406 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/484 (10%), Positives = 109/484 (22%), Gaps = 89/484 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55 F + + N AS+ I N+ N + + + N V Sbjct: 2 SFQQGLSGLNAASKNLDVIGNNVANTNTVGFKQSQAQFADMFANSLSGGGGTQAGIGVKL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + ++ F L + + + Y Sbjct: 62 AGIAQQFSQGSITVSNNPFDIAISGAGFYRLSD-------QGTISYSRNGQFHPDKDGYI 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N S L + ++ ++ T +R + + + + Sbjct: 115 VNSSGLRLTGYMANSTGQINTGTPT------DLRLSTADLPPVTTTRVNALV-------- 160 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 LD R L + + ++ + VY S G + + Sbjct: 161 --------------NLDSRGAPLSAAAFDLMDPATYHSSTSLSVYDSLGNSTPLSTYFVK 206 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + +S + + G + L +V Sbjct: 207 TAANSWDVFAANNGSLL---NGGLSIGTLNFLSNGSLDPLSSSSFNVTAPV--------- 254 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 Q+ SN Sbjct: 255 ------------------------------TTGASPLAFDIDFANTTQFGSNFGINALSQ 284 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + Y + + +A L N W E Sbjct: 285 DGYASGQLTGFSIGEDGIVSGSYSNGKFLSMGQIALANFANPQGLQAVGNN--TWKESAA 342 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + + V L EL +I ++ Y + + I D++LQT+ Sbjct: 343 SGAALVAAPATGGLGVLQAGAVEDSNVELTSELVNMITAQRVYQANAQTIKTQDQILQTV 402 Query: 476 LEGV 479 + Sbjct: 403 VNLK 406 >gi|91204389|emb|CAJ70889.1| similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 532 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 54/537 (10%), Positives = 123/537 (22%), Gaps = 62/537 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + I N+ N + Y + + + + Sbjct: 1 MGLGGALYAGVTGIRSHQSWLDVIGNNLSNINTYGYKSSRLLFSDLISQDKGSGGVNPMQ 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQ-----SFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + SS Q L F + + N + + + Sbjct: 61 IGMGVKVGSISSLFSQGTLEATNNEFDFAIQGDGFFVLNGGNKNFFSRVGTFATDASNQL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + SA + + E S+ + + + Sbjct: 121 VDSTTGYQILDSSGKTITIPYGSSVSATKTSTMTLTGTLESTPSSSSGEVLILSSALTSS 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-----DGTTLFET 230 ++ A+ + LD ++II IS + V + DGTT+ + Sbjct: 181 SVA---ATGATTLNALDTNTTDYTSGTDIITISYTEPDGTSGSVDFTYGAANDGTTVDDL 237 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + ++ + + S +L S Sbjct: 238 LAYINTNAFGDTTGTAGDGSAFATLSSSGKIIVTSTTAGEDELSLSISDSSTATGTWTNY 297 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------- 342 A S + D + + TI + Sbjct: 298 SLKASTYTTSTTIYDSQGTGHNVTLSFIKKNDGEWDMRASMPSADGTITTDTISAITFND 357 Query: 343 ---------------------------------------QYRSNPSFLRDGGSVSKKFLW 363 Q S S+ + Sbjct: 358 DGSLKSSGDTTLTFKFDGITTSQTVKFKLGTFGKTDGIYQSGKGSSVTASEQDGSESGSF 417 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + ++ + Y + + +A L N + S Sbjct: 418 SSFSVDTDGTMYALYSNGTSSKIAQLQLATFGNVQGLRRSGDNLYEQ--TDSSGEPLYTT 475 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I Y V++ EL+ LI ++ + +++++I D++L + + Sbjct: 476 GGTGSAGDIYNGYLEASNVDMTSELTSLIMAQRGFQLNSRVISTADEVLAEAVNLKR 532 >gi|167576662|ref|ZP_02369536.1| flagellar hook protein flgE [Burkholderia thailandensis TXDOH] Length = 395 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/474 (8%), Positives = 105/474 (22%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N + Q +I NI N++ + Sbjct: 2 SFNIALSGINAINSQLNTISHNIANSNTYGFKAGRANF---------------------- 39 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G Q + + + + + + + +K+ L Sbjct: 40 ----ATMVAGTQANGTYIGSTTQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSTLFT 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + R + + ++ + + Sbjct: 96 RVGYFKRDADGYIVDGFRRRAQGYGASGAYGDIRVPTDTEPAKASDSLEYVGNLSADWDA 155 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D+ D S + + + + Y G T Sbjct: 156 PKNPTFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVTT 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G G++ A D + Sbjct: 204 YYAMDGEIVGGSTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I Q P+ + + + Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGEPTTTVNRDNGYAAGVPGE 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L ++ Y + + +A L W S + + Sbjct: 284 VTLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLTAVGD--TAWRASAASGNPLIGSAG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ +EL ++ +++Y ++K++ ++M+Q L++ + Sbjct: 342 SGALGKVVAGSLELSNADVTKELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395 >gi|15606898|ref|NP_214279.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] gi|6225343|sp|O67711|FLGE_AQUAE RecName: Full=Flagellar hook protein flgE gi|2984140|gb|AAC07675.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] Length = 482 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/489 (10%), Positives = 130/489 (26%), Gaps = 44/489 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 +L F A + + N+ NA+ + + + V V Sbjct: 1 MLRSFYNAITGMDVSRFALDVTSDNLANANTVGFKKSRPIFQDMVSQVVVGLNTTTGTVK 60 Query: 54 --------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 S K ++ L++++ N + Sbjct: 61 TTTFGAGAVVDSTQKVWTIGSFKQTEITTDLAIEGKALFILRDVL-----TNQTYYTRDG 115 Query: 106 KLRDSLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + R + E Y N + + ++ E E Q + +NL Sbjct: 116 RFRINREGYLINPNGLYVQGFKVNPVTGEVTGTQLEDIRVETQIPPKATGEIYFNPPTNL 175 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI-SEIIGISTIVRNNNDMVVYTS 222 + + ++ L D L +++ ++I + T + + Sbjct: 176 DERAPIIDQTTTPFNPLDSFTYNYRYTLTIYDSLGREVPADIYFVKTGTNQWKVYFLASL 235 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV----VVSSNQGSAVPKGKIKALLQI 278 + D + + + ++ I +G +++ K + Sbjct: 236 KERYINVDWNGDDDKTDIVFLDLFNDQVHIADNGTFSTLPTFASKTLEFDPSTGKLVYIP 295 Query: 279 RDSVVPIFQNQLDEMARVL--------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +V NQ + L I ++ + G + + Sbjct: 296 GGDIVQDTANQKFYLEVDLTPESGPSEINDPNDTESYLNKLGAKLGSETNKIKIYVGEGI 355 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 Q Q+ ++ D ++ L ++ L+ ++ Y + Sbjct: 356 LQNNVIQNSYITQHAADFVVTMDQDGYARGELIDLYVLSEDGVVVGVYSNGETLPTYRLA 415 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A L++ N ++ + + N I + V++ +E Sbjct: 416 LAQFTDPEELVKKGSNLYASVKT-----PTILLPGGS--NKIRSAVVEMSNVDIAKEFIN 468 Query: 451 LIKVEQSYN 459 LI +++Y Sbjct: 469 LITAQRTYQ 477 >gi|86747894|ref|YP_484390.1| flagellar hook-associated protein [Rhodopseudomonas palustris HaA2] gi|86570922|gb|ABD05479.1| Flagellar hook-associated protein [Rhodopseudomonas palustris HaA2] Length = 588 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/422 (18%), Positives = 151/422 (35%), Gaps = 16/422 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL + A + Q + N+ NAD Y + + V++ Sbjct: 1 MSLDIARSIAVGSLMASQVQISVASSNVSNADTTGYSVKTANQVATTSGGAGTGVSITGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYISKLRDSL 111 S + K + A +S +G + ++ + + S + ++ L ++ Sbjct: 61 TSSVDKLLMKSVIAATSELGAAEIDDTYLDRLQALYGSTSGANDTGTSLANTLASLESAV 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S + S L V+ +++ ++ +Q +RADAD EI ++ + L + Sbjct: 121 TSLAGTPSSASLQANVVSALDDLASQLRETSSGIQSLRADADAEIAADVDEVNTALKTID 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +ND IK AS + D DQR+V LQ ++ + IS V ++ DM VYTS G L ++ Sbjct: 181 DLNDQIKQAAASGNSTADLEDQRNVALQTVAGKMNISYFVSSSGDMQVYTSGGQALVDSS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVS---SNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++F +S +S + ++ + S + G+I AL +RD+ +P Q Sbjct: 241 AHLLSFTAASSVKASSTYDGTSSGLSGITLNGVDVTSQISSGEIGALFDLRDTELPAAQA 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QLD++A L S + + + I + Sbjct: 301 QLDQLATTLADSLNTASNAGTSLPPPA----TLTGTTAVTSSTALSATGIVRIAVADQSG 356 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + G + + G + + + G V + E Sbjct: 357 NLVSYGDLDLSSYATVGDLVDGINAISGLSAAIDSSGKLVISATGSGNGVAINEMTGAVG 416 Query: 409 GW 410 Sbjct: 417 AD 418 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 46/417 (11%), Positives = 123/417 (29%), Gaps = 19/417 (4%) Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQ 136 L++ + L + + NS + +L++ + ++ + + Sbjct: 174 TALKTIDDLNDQIKQAAASGNSTADLEDQRNVALQTVAGKMNISYFVSSSGDMQVYTSGG 233 Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196 + A + +N S + D RD Sbjct: 234 QALVDSSAHLLSFTAASSVKASSTYDGTSSGLSGITLNGVDVTSQISSGEIGALFDLRDT 293 Query: 197 LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256 L + ++ + ++P + T ++ + I Sbjct: 294 ELPAAQAQLDQLATTLADSLNTASNAG-----TSLPPPATLTGTTAVTSSTALSATGIVR 348 Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 + V+ G+ V G + + N + ++ + S G+ V Sbjct: 349 IAVADQSGNLVSYGDLDLSSYATVGDLVDGINAISGLSAAIDSSGKLVISATGSGNGVAI 408 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNP------------SFLRDGGSVSKKFLWN 364 + + L V SN + + + Sbjct: 409 NEMTGAVGADGAGLSDYFGLNDLVTGTGASNFAVRSDILANSGLFQVTTLDDSATLTTGS 468 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHM 423 AG D+++ + ++ F G+ + + +YA + + + + + + Sbjct: 469 KVLTAGSSDVVDGLYSALTESRSFGASGGLGSTTGSFADYAADIVSNVASKATSAATTYT 528 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ + ++ GVNL EE + + ++ Y +++LI ++M +L+ V+ Sbjct: 529 AKSTTQSSLANALTSQSGVNLDEETAKISSLQNQYTAASQLIQVINEMFSSLMTAVQ 585 >gi|283833630|ref|ZP_06353371.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291071313|gb|EFE09422.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 411 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 43/474 (9%), Positives = 103/474 (21%), Gaps = 66/474 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGAASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + R + + T Sbjct: 97 NGQFK--------------LDENRNIVNMQGLQLTGYPATGTPPTVQQGANPAPITIPNT 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + ++ + P F+ ++ T Sbjct: 143 LMAAKSTTTASMQINLNSTDKV------------------------PAKTPFDPSDADTY 178 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + K ++ + Sbjct: 179 NKKGTVTVFDSQGNAHDMNIFYVKNAQSNTWEVHTQDASTGDPAQSAGFMRFNENGVFLG 238 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLC-QGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 A + G I ++ + Q + + + K Sbjct: 239 ISATATGAPAGTDIQITTGQINGADAADFSLSFLNSMQQNTGANNIVATNQNGYKPGDLV 298 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + ++ +Y + + +A N L N W S L Sbjct: 299 SYQINNDGTVVGNYSNEQKQVLGQIVLANFANNEGLASQGDNV--WAATQSSGVALLGTA 356 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 357 GEGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 410 >gi|82544458|ref|YP_408405.1| flagellar hook protein FlgE [Shigella boydii Sb227] gi|81245869|gb|ABB66577.1| hook protein [Shigella boydii Sb227] gi|320186977|gb|EFW61690.1| Flagellar hook protein FlgE [Shigella flexneri CDC 796-83] gi|332094030|gb|EGI99082.1| flagellar hook protein flgE [Shigella boydii 3594-74] Length = 402 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|300696919|ref|YP_003747580.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum CFBP2957] gi|299073643|emb|CBJ53163.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum CFBP2957] Length = 642 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 131/407 (32%), Gaps = 15/407 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 ++ N A A NI NA Y R++ + T + + V V Sbjct: 3 SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + + +A Q + S N+ ++ ++ +S Sbjct: 63 TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTSFFNASDS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N S + + A + FN ++ + + +++ +++++ ++ + Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180 Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ND I A+ A+D DQRD L+Q +++ I S + ++ +Y +G L + Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGS 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + Y T S VS + S + G + L+Q R +V+ QN + Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNVLTPAQNSVG 299 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + + ++ + G + +N Sbjct: 300 RLAAAVTADVNTQNKEGMDLNGNLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQG 359 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + V + + + + + G + Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + R + + + + +++ Q Q + + + Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGSQS 242 Query: 99 SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ L K+ + + + + + + Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNVLTPAQNSVGRLA 302 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++ E +N + S + ++ I + + N+ Sbjct: 303 AAVTADVNTQNKEGMDLNGNLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261 V Y+ T+ + T + Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + + + + + + + + + + L Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAVNLTYSGGSLSGFP 482 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G + Q + + ++ ++ Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + N ++ N + + S + + + + + G Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSRASTNLTSQKSLLASSTAQQQSVSG 602 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VNL +E L+K +Q+Y + K++ + + +LL Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639 >gi|222032829|emb|CAP75568.1| flagellar hook protein flgE [Escherichia coli LF82] gi|312945638|gb|ADR26465.1| flagellar hook protein FlgE [Escherichia coli O83:H1 str. NRG 857C] Length = 401 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +F V++SN + + G I Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|323190588|gb|EFZ75860.1| flagellar hook protein flgE [Escherichia coli RN587/1] Length = 401 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 108/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDIIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + + +D + A L A ++ S Sbjct: 202 KTGDNHWDVYTLDSSDPTGTANPATT---------------------LVFNANGVLTSDP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 KD + Q + + + K Sbjct: 241 TKDITTAAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|240137459|ref|YP_002961930.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] gi|240007427|gb|ACS38653.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] Length = 460 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + S ++I NI N+ Y R DT + +Q + + Sbjct: 1 MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60 Query: 61 NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109 + + Q F A+ + + + Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D I A I + + + Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + DA V + +S + T++ Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + +++ D + + ++V NQ Sbjct: 234 ASGAPVSVQSRWAKVAAADTATGTSDTWNLFTADKTSVNG------------------NQ 275 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +FS + + + ++ +S + + Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGEVTLDLSGGLTQYAAASGTVT 335 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + N + + Y + VA L + Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLGN 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + +K V ++ E S +I +Q+Y+ + +++ Sbjct: 394 YQQTVASGEPIVGLKDSTVVGA----NVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449 Query: 470 KMLQTLLEGVK 480 M+ LL ++ Sbjct: 450 TMISDLLNVIR 460 >gi|218528943|ref|YP_002419759.1| hypothetical protein Mchl_0913 [Methylobacterium chloromethanicum CM4] gi|218521246|gb|ACK81831.1| protein of unknown function DUF1078 domain protein [Methylobacterium chloromethanicum CM4] Length = 460 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 54/492 (10%), Positives = 119/492 (24%), Gaps = 44/492 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + S ++I NI N+ Y R DT + +Q + + Sbjct: 1 MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60 Query: 61 NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109 + + Q F A+ + + + Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D I A I + + + Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180 Query: 170 LTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + + DA + + + VYT+ G + Sbjct: 181 NAASTQGLLSAFSDGTDARVTPANGATTGSVSQANAQSFIDNSIAGPALTVYTASGAPVS 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + N D V+ NQ S G+ Sbjct: 241 VQSRWAKVAAADTAAGTSDTWNLFTADKTSVNGNQASWTNIGQ----------------- 283 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +FS + + + ++ +S + Sbjct: 284 ---------AFTFSPSGQMTAPTGKTVPISNLTVDSVNVGEVTLDLSGGLTQYAAASGTV 334 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + N + + Y + VA L + Sbjct: 335 TTNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLG 392 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + S + +K V + ++ E S +I +Q+Y+ + +++ Sbjct: 393 NYQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTA 448 Query: 469 DKMLQTLLEGVK 480 M+ LL ++ Sbjct: 449 QTMISDLLNVIR 460 >gi|78776765|ref|YP_393080.1| flagellar hook-associated protein FlgK [Sulfurimonas denitrificans DSM 1251] gi|78497305|gb|ABB43845.1| Flagellar hook-associated protein [Sulfurimonas denitrificans DSM 1251] Length = 628 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 59/416 (14%), Positives = 130/416 (31%), Gaps = 24/416 (5%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 S+ + + + A ++ NI NA+++ Y R+ +T Sbjct: 4 SIFNSLSIGYSGLSAAQAGVSTTSHNITNAESEGYTRQRVVTAAATPVNMAPGNVGNGTQ 63 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 ++ N S+ + + + + Sbjct: 64 IMDIARIFDNFVYDRYTGISAEKEYSDFTKQTLETLSTYF-PEIDGVGIKSDLQDYYNMW 122 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++++ N D + ++ E + ++ ++ +++ + ++++ + + EL+ Sbjct: 123 QTFADNPDNDAIKLSLAKQTEALSNGIISTQNKIYDLQSTLNTQLKVNVDEVNLLAKELS 182 Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N +I+ A A+D D+R+ + ++++IG +I G Sbjct: 183 KINISIEVAEAGDTFTANDLRDKRNSIELSLAKLIGADSI------------SGQINSNI 230 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + EK SYT++ I G + S L R V I ++ Sbjct: 231 IINSASNEKNGSYTLSVNGFNIVDGGTYHPIHISSDKNSNGFYELSYERQDGVLIAMDEK 290 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 R+ D I GNS P + D N + E+ + S Sbjct: 291 IPGGRIGAILDLRGDKIEGNSSGTPSNGTLQKVLDELNAFATTLIESTNNLYASSATKSM 350 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 S++ NL + + N V IN T+ A + Sbjct: 351 SSKNISINPTLPILDSNLNIRAGAFDIVIYDIDGNESARRVININNLTTMNGVAGS 406 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 4/234 (1%) Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 N ++GV S++ + K ++ + F + + + Sbjct: 396 NLTTMNGVAGSNSIQGQIIDQKDDNADANANNDIDDFMQFHWATYQGGGNALELVMDSSY 455 Query: 310 NSENVPGLFIAD---GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + D + + + + + Sbjct: 456 GAKGYTFSIEDNLKTNQFDSGSNFAGALGLSRFFDGDSAKDIGLNSALRDNPTNIKAGKT 515 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + +G L + +N+ F+ V + T+ + ++ + Sbjct: 516 SSSGDNTLALNMIQQQFENYSFE-VGKLKYESTIYGMFDVVATEVGIRTKEAILNNQTIT 574 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 FN YS+ V++ EEL+ LIK + SY ++K+I D+M+QTLL + Sbjct: 575 AQFNATELEYSSISKVSIDEELTNLIKYQTSYGAASKIITTIDQMMQTLLGIKQ 628 >gi|322616547|gb|EFY13456.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620512|gb|EFY17376.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622506|gb|EFY19351.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629657|gb|EFY26432.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632623|gb|EFY29369.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636882|gb|EFY33585.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641580|gb|EFY38218.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644070|gb|EFY40616.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650030|gb|EFY46448.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653955|gb|EFY50278.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658487|gb|EFY54749.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663345|gb|EFY59547.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670079|gb|EFY66219.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674857|gb|EFY70948.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676673|gb|EFY72740.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682595|gb|EFY78614.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686652|gb|EFY82631.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195766|gb|EFZ80942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198342|gb|EFZ83446.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203174|gb|EFZ88204.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209177|gb|EFZ94114.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209681|gb|EFZ94610.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217863|gb|EGA02578.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222151|gb|EGA06535.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224923|gb|EGA09181.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229665|gb|EGA13788.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232890|gb|EGA16986.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240625|gb|EGA24667.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242939|gb|EGA26960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250256|gb|EGA34145.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252631|gb|EGA36469.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258841|gb|EGA42494.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261030|gb|EGA44623.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266939|gb|EGA50424.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269980|gb|EGA53429.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 403 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N A + Sbjct: 97 NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + ++ + T ++ T++++ + T Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D ++ + L ++ S + Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIIATNQNGYKPGDLVS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402 >gi|167579496|ref|ZP_02372370.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis TXDOH] Length = 667 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/461 (12%), Positives = 131/461 (28%), Gaps = 32/461 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V+ V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + L+A + + A I+ L++ Sbjct: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ + Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I ++ + LDQRD+ + K+S+ G+ + N V+ + G L Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQFAGVQVVP-TNGSYSVFLAGGQPLVVGNAS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S +++ G + LL R + Q Sbjct: 240 YQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI---------- 338 QL +A + ++ + + PG + + S + Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGGPIVYANQGNTSSSTLSASIANGAQ 359 Query: 339 ----CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 Y + L D + S + D + Sbjct: 360 PPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTVL 419 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 T L ++ + + S + Sbjct: 420 PTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQ 460 Score = 87.0 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 45/427 (10%), Positives = 106/427 (24%), Gaps = 9/427 (2%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + S + S + S T + S + + ++ Sbjct: 239 SYQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQ 298 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG + A +V + + + S T+ Sbjct: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGGPIVYANQGNTSSSTLSASIANGA 358 Query: 181 TASKHDAHDFLD-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 D D + L + + + + N + +L T +F Sbjct: 359 QPPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTV 418 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + +G +++ + + QL L Sbjct: 419 LPTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQGAVSAGYQLPAGTTTLTY 478 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + S K + + + + V Sbjct: 479 NASSKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPTKGASLTISSTTQPAPSGVMN 538 Query: 360 KFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ D N ++ + + + N TL + + Sbjct: 539 GVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAI 598 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + I+++ + GVN EE + L++ +Q Y + K+I + + Sbjct: 599 GNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSV 658 Query: 472 LQTLLEG 478 QT+L Sbjct: 659 FQTVLGL 665 >gi|56413836|ref|YP_150911.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362759|ref|YP_002142396.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128093|gb|AAV77599.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094236|emb|CAR59741.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 110/473 (23%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N A + Sbjct: 97 NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + ++ + T ++ T++++ + T Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D ++ + L ++ S + Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S + L Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGAALLGTAG 349 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402 >gi|163850383|ref|YP_001638426.1| hypothetical protein Mext_0950 [Methylobacterium extorquens PA1] gi|163661988|gb|ABY29355.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 460 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + S ++I NI N+ Y R DT + +Q + + Sbjct: 1 MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60 Query: 61 NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109 + + Q F A+ + + + Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D I A I + + + Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + DA V + +S + T++ Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + +++ D + + ++V NQ Sbjct: 234 ASGAPVSVQSRWAKVAAADTAAGTSDTWNLFTADKTSVNG------------------NQ 275 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +FS + + + + +S + + Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGAVTLDLSGGLTQYAAASGTVT 335 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + N + + Y + VA L + Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLGN 393 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + +K V + ++ E S +I +Q+Y+ + +++ Sbjct: 394 YQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449 Query: 470 KMLQTLLEGVK 480 M+ LL ++ Sbjct: 450 TMISDLLNVIR 460 >gi|315296707|gb|EFU56002.1| flagellar hook protein FlgE [Escherichia coli MS 16-3] gi|320196442|gb|EFW71065.1| Flagellar hook protein FlgE [Escherichia coli WV_060327] Length = 401 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNTFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +F V++SN + + G I Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|307318929|ref|ZP_07598360.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] gi|306895343|gb|EFN26098.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] Length = 402 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/480 (9%), Positives = 111/480 (23%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N S + +++ NI NA+ Y R T + Sbjct: 1 MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSM-------------- 46 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S E + + ++ + Sbjct: 47 -------ILPSGNGSYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQ 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + + N + + +A + + ++ + I Sbjct: 100 EYLTRAGSFVPDSEGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIATG 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + G + + +VVY S G T + Sbjct: 160 STKGSMGANLP-------------SGAAVGDVSTTSLVVYDSQGNTRILDFNYEKTGANA 206 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 S V ++ + ++ N + Sbjct: 207 WSVEVVDRTSSTVLGTQTLNFNADGS---------------------------------- 232 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + A ++ + Q + + Sbjct: 233 --------LTATPATLTTSAMTALPGTGANLSALTIDLTKTTQLGYAFNADGGNIDGNAP 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +A + + L + N S Sbjct: 285 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLRPESGNVYSQ--GVDSGVII 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I + V++ EEL+ +I+ +++Y ++K+ ++L+ L+ + Sbjct: 343 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 402 >gi|194432446|ref|ZP_03064733.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|194419333|gb|EDX35415.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|332092817|gb|EGI97885.1| flagellar hook protein flgE [Shigella dysenteriae 155-74] Length = 401 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 109/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D + A+ L A ++ S Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ G + + Q + + + K Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASKGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|134297191|ref|YP_001120926.1| flagellar hook-associated protein FlgK [Burkholderia vietnamiensis G4] gi|134140348|gb|ABO56091.1| flagellar hook-associated protein FlgK [Burkholderia vietnamiensis G4] Length = 655 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 126/408 (30%), Gaps = 18/408 (4%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56 N + N A + +NI NA Y + P+ V VT + Sbjct: 6 MNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEESGQYTASGYLPQGVNTVTVQ 65 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L+A S G Q S A + I+ L++ + Sbjct: 66 RQYSQYLSDQLNAAQSQGGAQSTWYSLVAQLNNYVGSPTA--GISTAITNYFTGLQNVAN 123 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S+ + +T I NA+ + + ++ +R + ++ +S + + S++ +N Sbjct: 124 NASDPSVRQTAISNAQILADQLKATGQQYDALRQSVNTQLTSTVSQINTYTSQIAQLNQQ 183 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I ++ + LDQRD+ + +S + G+ + RN++ V+ + G L Sbjct: 184 IGAASSQGQPPNQLLDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVADKSYQL 242 Query: 237 FEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S + S+ S +++ G + LL R + Q QL Sbjct: 243 AAVASSSDPSELTVVSQGIAGANPKTPDQSLPDASLSGGTLGGLLAFRRQTLDPAQAQLG 302 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + ++ + + PG + Sbjct: 303 ALATSFAAQVNAQNALGVDLSGNPGGSLFAVAPATVFANQGNTGNAALSVSFTNPAQPTT 362 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D + + + A + + + + N Sbjct: 363 GDYTLSFDGTNYTLADRASGSVIGQSTSMPASLGGLQLSFSSGAMNAG 410 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 33/419 (7%), Positives = 97/419 (23%), Gaps = 2/419 (0%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + DK + A + + + + S + Sbjct: 235 VADKSYQLAAVASSSDPSELTVVSQGIAGANPKTPDQSLPDASLSGGTLGGLLAFRRQTL 294 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + + + ++ F ++ N A+ Sbjct: 295 DPAQAQLGALATSFAAQVNAQNALGVDLSGNPGGSLFAVAPATVFANQGNTGNAALSVSF 354 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + S V + + + G L + ++ Sbjct: 355 TNPAQPTTGDYTLSFDGTNYTLADRASGSVIGQSTSMPASLGGLQLSFSSGAMNAGDQFT 414 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + ++ ++ +V + ++ + Sbjct: 415 VLPTRGALTGFGLATTSGAAIAAASPVVASASTTNIGTGKIVSNGVSSGYQIPATKLTYD 474 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR--DGGSVSK 359 + + ++G + + L Sbjct: 475 AATNSLSGFPVGTTVTIAGTPPTSVTIANPTDSVPYNASQGAKMTMSGTLNGVTVTLSGA 534 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ Y + ++ + + + TL N + + S Sbjct: 535 PSDGDSFSIGPYAGGTSDGANALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLK 594 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 595 SSSAAQTSLVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAQTLFQTVLGL 653 >gi|59712481|ref|YP_205257.1| flagellar hook protein FlgE [Vibrio fischeri ES114] gi|197335363|ref|YP_002156700.1| flagellar hook protein [Vibrio fischeri MJ11] gi|24459277|gb|AAL86630.1| FlgE [Vibrio fischeri ES114] gi|59480582|gb|AAW86369.1| flagellar hook protein FlgE [Vibrio fischeri ES114] gi|197316853|gb|ACH66300.1| flagellar hook protein [Vibrio fischeri MJ11] Length = 432 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/481 (9%), Positives = 114/481 (23%), Gaps = 62/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQRS 57 A + A + + N+ NA+ + + Sbjct: 3 YVALSGLAAAQKDLNTTSNNLANANTYGFKESRAEFGDVYSSSLFSNAKTTTGGGAQTTK 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + Q F A+ + S E+Y Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGQGFFAVAKDRLQPATNELS---RNGAFHLDNENYVTT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D V ++ A ++ +EI + Sbjct: 120 SNDEFLLGYEVDPESGNVSSYEPKALKIPDQFGKPKPTENVEIG---------------M 164 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 D D S + + M Y T + Sbjct: 165 NLPATEVPKDPALFDMNDPDTYNKSTSVTTYDSLGQPYKMTTYYVKDATQPNRWNVFYSS 224 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + S G+I + + N +A Sbjct: 225 TDTDGEKPVNINGG------------DSTNAAGQIGHSIIFNNDGTTQSINAGQPVATTT 272 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 +G N D + R Sbjct: 273 LGE------NGLNLNGADPSQTLTMKFDNPTQFSAPFEMR--------------RFSEDG 312 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ +++ Y + + + + L + W S Sbjct: 313 ATTGYLSKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQ--NGGTQWSTTQASG 370 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +Q F I +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 371 AAIWGEANQGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRSLDVHNQLQQNILQ 430 Query: 478 G 478 Sbjct: 431 I 431 >gi|11386807|sp|P57422|FLGE_BUCAI RecName: Full=Flagellar hook protein flgE gi|25403598|pir||E84969 flagellar hook protein flgE [imported] - Buchnera sp. (strain APS) gi|10039011|dbj|BAB13045.1| flagellar hook protein flgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 405 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60 A + + I NI NA Y R + N V S + Sbjct: 2 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 N + +L + + F L + + + + N+ Sbjct: 62 NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 115 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L ++ N + L + + N I Sbjct: 116 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 149 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + R+ + + + + + E + N ++ Sbjct: 150 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 209 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 N +TV ESN + +S + G++ Sbjct: 210 NKWTVNVESNDSDDKETIKNSFDLTFNDDGEL---------------------------- 241 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + K Q S+ S+ + + Sbjct: 242 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 287 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++I YC+ + ++ L + N ++ Sbjct: 288 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 346 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S V+L +EL +I +++Y + + DK++ TL+ Sbjct: 347 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 404 >gi|254473478|ref|ZP_05086875.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] gi|211957594|gb|EEA92797.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] Length = 397 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 47/479 (9%), Positives = 108/479 (22%), Gaps = 84/479 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + N + + N S + +++ NI NA+ Y R T + + S Sbjct: 1 MGLYGIMNTSVSGMNAQSNKLSTVADNISNANTVGYKRYKTAFSSLVGSGGTSGHESGIV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 N A + S N Sbjct: 61 NTTVVQTVRQQGAFNFTSRGTDLAINGKGFFQVQDSQGSTYYTRAGDFVLDKNGQMVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + ++++ S + + Sbjct: 121 GYKLLSAG-------------------------GAPVTVDLNTPVWQASSEGELGVNLAS 155 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T + A + D +S +N N + + ++ Sbjct: 156 STPVRTGAPSYPGNFD-------YKTSVSAYDQNGNVVKIDLVYSKIGQNMTGSTVDDST 208 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ P+ + V + + + G L + + + + Sbjct: 209 WKVQAYNQDTPPVELANVDLVFDGDGTLQTGSPDELAFTVPNGETLTLDLSKTVTAGDKF 268 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S ++ D + + I + + SNP L+ Sbjct: 269 SVNKVDVDGYGPSTIKTIRIEADGRVFGVYEGSAEKLLDQIQIVNFSNPDGLQAKSGNVY 328 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + A Sbjct: 329 AATDASGDPA-------------------------------------------------- 338 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + V+L EL+ +++ +++Y+ + K+ + ++LQ L Sbjct: 339 -VGFPGDNGFGSLYSGAVEGSNVDLAAELTEMVQAQRTYSANTKVFNASSELLQELNNL 396 >gi|161526179|ref|YP_001581191.1| flagellar hook-associated protein FlgK [Burkholderia multivorans ATCC 17616] gi|189349105|ref|YP_001944733.1| flagellar hook-associated protein FlgK [Burkholderia multivorans ATCC 17616] gi|160343608|gb|ABX16694.1| flagellar hook-associated protein FlgK [Burkholderia multivorans ATCC 17616] gi|189333127|dbj|BAG42197.1| flagellar hook-associated protein 1 [Burkholderia multivorans ATCC 17616] Length = 659 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 46/391 (11%), Positives = 121/391 (30%), Gaps = 18/391 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVNTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L+ + G S A + I+ L++ Sbjct: 63 TVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTGLQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ + +T + NA+ + + ++ +R + ++ +S + + +++ + Sbjct: 121 VANNAADPTVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINTYTAQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I ++ + +DQRD+ + +S + G+ + ++ V+ + G L Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVADKS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+ +++ G + LL R + Q Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +L +A + ++ + + G + + + ++ Sbjct: 300 KLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSFSNASQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 D + + + A + Sbjct: 360 PTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 390 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + K A Q +A + + + ++ F Sbjct: 295 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSF 354 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238 AS+ D+ D +++ S + N + D + T+ F Sbjct: 355 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 414 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + +G +++ ++ + V +Q + Sbjct: 415 VLPTRGALDGFQLATSNGSAIAAASPVVTSAASTNAGTATITQGPVSAGYQVPATTLTYD 474 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355 P I + + + + + Sbjct: 475 AATKSLSGFPAGTTVTIAGTPPQTVTITSSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 534 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y N ++ + + + N VTL + + + Sbjct: 535 LSGAPADGDTFRIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 594 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I+ + + GVN EE + L++ +Q Y + K+I + QT+ Sbjct: 595 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 654 Query: 476 LEG 478 L Sbjct: 655 LGL 657 >gi|144900940|emb|CAM77804.1| Possible flagellar hook-associated protein 1 [Magnetospirillum gryphiswaldense MSR-1] Length = 554 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 84/554 (15%), Positives = 192/554 (34%), Gaps = 76/554 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVV 53 MSL A + A NI NAD + Y + + V ++ Sbjct: 1 MSLTLALGSATASLRTIQSELALAANNIANADTEGYSVKSATKVNTTTGGSGIGTGVDII 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFE----ALKEMMSADDHYNNSPTHYISKLRD 109 S+ K + +SA + + + +++ D + + +++L Sbjct: 61 GISSKVDANLLKSIITATSANAEAATDADYLDRLAEILGQLTSSDSGGGTLSASLTELSA 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +LE + D L + + + ++ +VQ +RA+AD IE ++++ L Sbjct: 121 TLEELAATPESDTLKTQAVLQLTDAAASLRDTSAQVQDLRAEADDGIESAVASVNESLHA 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +ND+I + D DQR VL+ ++S + IS + M +YT G L Sbjct: 181 IDSLNDSIVLAQSRGESTADLEDQRMVLVAQLSTQMDISYYTGEDGAMTIYT-GGQPLLN 239 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD--------- 280 + +++++ N+ T + F + + ++V G I AL+++RD Sbjct: 240 SSVHELSYQASNTVTSETVYPGGFDAITLNGQDITTSVKSGTIAALVELRDDTLPAVQDQ 299 Query: 281 --SVVPIFQNQLDEMARVLIGSFSEKDPIAG-----------------------NSENVP 315 ++ ++Q++ ++ S + ++ + Sbjct: 300 LDTIATDLRDQMNALSNQGSASPAPQNLTGTVAGLAGTDAIAGTGTLRVGLVDSDGSAQT 359 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG----- 370 I + L ++ V+ ++ + + S + ++ G Sbjct: 360 LTDIDMSTITSVDDLLGALNAIAGVSASLDADGQLVVESTDASLGIALSGGDVGGKSVSG 419 Query: 371 ----------YPDLINHYCDSFNKNFIFDPVAGINTNVTLLE---------------YAR 405 S + V + N L+ A Sbjct: 420 YFGLNDMLTGDGAEDLFVSASLTADPSLLAVGSLGDNGIGLDGGALAQAMADAIDTSAAT 479 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + + + + + +++S+S+ GVN+ EE + + ++E +Y+ S +++ Sbjct: 480 DLVADIGAKSKAADSVATSRETTLTALTDSFSSRYGVNIDEETAHISELENAYSASAQVL 539 Query: 466 MFTDKMLQTLLEGV 479 +M +LL V Sbjct: 540 SAIQEMFDSLLNAV 553 >gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 49 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N A + Sbjct: 96 NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 143 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + ++ + T ++ T++++ + T Sbjct: 144 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D ++ + L ++ S + Sbjct: 204 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 244 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 245 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 291 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 349 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|150395503|ref|YP_001325970.1| flagellar hook protein FlgE [Sinorhizobium medicae WSM419] gi|150027018|gb|ABR59135.1| flagellar basal body FlaE domain protein [Sinorhizobium medicae WSM419] Length = 402 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/480 (9%), Positives = 111/480 (23%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N S + +++ NI NA+ Y R T + Sbjct: 1 MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFS---------------- 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S E + + ++ + Sbjct: 45 -----SMILPSGNGAYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQ 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + + N + + +A + + ++ I Sbjct: 100 EYLTRAGSFVPDSEGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASKGLIAAG 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + V + ++ VY S G T + Sbjct: 160 STTGSMGANLPSGAAVGDISTTSLV-------------VYDSQGNTRILDFNYEKTAANA 206 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 S V ++ + ++ N + Sbjct: 207 WSVEVVDRTSSTVLGTQTLNFNADGS---------------------------------- 232 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + A ++ + Q + + Sbjct: 233 --------LTATPATLTTSAMASLPGTGANLSALTIDLTKTTQLGYAFNADGGSIDGNAP 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y + +A + + L + N S Sbjct: 285 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLKPESGNVYSQ--GVDSGVII 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I + V++ EEL+ +I+ +++Y ++K+ ++L+ L+ + Sbjct: 343 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 402 >gi|16760053|ref|NP_455670.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764533|ref|NP_460148.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142176|ref|NP_805518.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179694|ref|YP_216111.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167553035|ref|ZP_02346785.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994041|ref|ZP_02575133.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264030|ref|ZP_02686003.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467129|ref|ZP_02700971.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822620|ref|ZP_02834620.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442954|ref|YP_002040431.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197250199|ref|YP_002146866.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265088|ref|ZP_03165162.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245171|ref|YP_002215960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204930842|ref|ZP_03221715.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353085|ref|YP_002226886.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857315|ref|YP_002243966.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161844|ref|ZP_03347554.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424680|ref|ZP_03357445.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582037|ref|ZP_03363863.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648926|ref|ZP_03378979.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865505|ref|ZP_03387624.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584319|ref|YP_002638117.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911003|ref|ZP_04654840.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289806609|ref|ZP_06537238.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828580|ref|ZP_06546405.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392287|sp|P0A1J1|FLGE_SALTY RecName: Full=Flagellar hook protein flgE gi|60392288|sp|P0A1J2|FLGE_SALTI RecName: Full=Flagellar hook protein flgE gi|25511789|pir||AB0640 flagellar hook protein FlgE [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47673|emb|CAA36022.1| flgE protein (AA 1-403) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419694|gb|AAL20107.1| hook protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502347|emb|CAD08301.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi] gi|29137806|gb|AAO69367.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127327|gb|AAX65030.1| flagellar biosynthesis, hook protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401617|gb|ACF61839.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630413|gb|EDX49039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213902|gb|ACH51299.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243343|gb|EDY25963.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939687|gb|ACH77020.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204320301|gb|EDZ05505.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272866|emb|CAR37795.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322416|gb|EDZ10255.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328054|gb|EDZ14818.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341012|gb|EDZ27776.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347322|gb|EDZ33953.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709118|emb|CAR33451.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468846|gb|ACN46676.1| flagellar hook protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246388|emb|CBG24197.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992951|gb|ACY87836.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157718|emb|CBW17210.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912164|dbj|BAJ36138.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086383|emb|CBY96156.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223795|gb|EFX48858.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714164|gb|EFZ05735.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129447|gb|ADX16877.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623708|gb|EGE30053.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628165|gb|EGE34508.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988068|gb|AEF07051.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 403 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N A + Sbjct: 97 NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + ++ + T ++ T++++ + T Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E D ++ + L ++ S + Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402 >gi|82777309|ref|YP_403658.1| flagellar hook protein FlgE [Shigella dysenteriae Sd197] gi|309788143|ref|ZP_07682749.1| flagellar hook protein flgE [Shigella dysenteriae 1617] gi|81241457|gb|ABB62167.1| hook protein [Shigella dysenteriae Sd197] gi|308923995|gb|EFP69496.1| flagellar hook protein flgE [Shigella dysenteriae 1617] Length = 402 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKAATTLKFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAINGAEPATFSLSFPNS--------------MQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|328543140|ref|YP_004303249.1| flagellar hook-associated protein FlgK [polymorphum gilvum SL003B-26A1] gi|326412886|gb|ADZ69949.1| Flagellar hook-associated protein FlgK [Polymorphum gilvum SL003B-26A1] Length = 617 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 65/445 (14%), Positives = 148/445 (33%), Gaps = 15/445 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 M L + + A + +Q N+ NA+ Y + + + Sbjct: 1 MGLTSALHTALFGLSYNQKQIDVTAANVANANVAGYTTKSVSAHVYFDNGGNVSGILSTE 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + + + ++ + + ++S +S L L + Sbjct: 61 IRRQVNEAIQSAYWGSLADANYSKTVAAYTERLDEIFGTIDNSSSLPSLMSDLTAGLSTL 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V+ A+ + + N+S +Q +R + D I +++ + + L ++ +++ Sbjct: 121 VNTPDSYAARQEVLSVADTLARQLNSSYELLQSMRQETDSLIRMQVGEVNQLLGQIELID 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPR 233 + I+ A + + +DQRD L+++S IS + + + T +G L+ + Sbjct: 181 EKIEAAKAVGANTANLVDQRDRYLEQLSGYADISITQDGSGGLQINTRNGQMLYGDGHAS 240 Query: 234 DINFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++F+ + I + + G++ G + ALL++RD + Q QLDE Sbjct: 241 SLSFDPTGTLGAGQPGGGITVTTYGGTRYDLGASSSSGSLMALLELRDDALVQAQAQLDE 300 Query: 293 MARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 +A L + SE + L + + T V Sbjct: 301 IAAQLSLAFSNVTVASEDATDGTDVGYELDLSGLQPGNTVSLRYVDSAGTTQTVTFVAVE 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYAR 405 +PS L G+ + V + + Y D + L+ Sbjct: 361 DPSLLPLDGATTPTAGDTVYGIDISGGVPAGYVTQIIAALSATDLNVSDDGLGNLVVLGD 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFN 430 + + S + + + Sbjct: 421 TGTNTVVSSLSGNVTVTDPANQGLG 445 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 47/431 (10%), Positives = 114/431 (26%), Gaps = 5/431 (1%) Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA-LKEMMSADDHYNNSPTHYISKLRDS 110 V + + D+ L S + Y + +S Sbjct: 189 VGANTANLVDQRDRYLEQLSGYADISITQDGSGGLQINTRNGQMLYGDGHASSLSFDPTG 248 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + S + ++R DA + + ++ + LS Sbjct: 249 TLGAGQPGGGITVTTYGGTRYDLGASSSSGSLMALLELRDDALVQAQAQLDEIAAQLSLA 308 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLF 228 D LD + + + + + + V L Sbjct: 309 FSNVTVASEDATDGTDVGYELDLSGLQPGNTVSLRYVDSAGTTQTVTFVAVEDPSLLPLD 368 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + S V + L+ + D+ + Sbjct: 369 GATTPTAGDTVYGIDISGGVPAGYVTQIIAALSATDLNVSDDGLGNLVVLGDTGTNTVVS 428 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + + + + G + +I +NP ++P Sbjct: 429 SLSGNVT--VTDPANQGLGLALFVDAGNGMSLYTGALEGGGQKTGFAGSIRLNPAVINDP 486 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S L +V + Y G T+L+Y + Sbjct: 487 SQLVIYETVPAANSGKDSSRPQYLLDALATTTITFDPAAGIGSGGDPFKGTMLDYVNQVV 546 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + + + ++++ Y + V++ EL+FLI+++ +Y + +++ Sbjct: 547 AFQGEQSEKAVLTSQAHETITSNLAIRYEESYAVDVDAELAFLIELQNAYAANARVMQAA 606 Query: 469 DKMLQTLLEGV 479 +M LL V Sbjct: 607 KEMFDVLLNSV 617 >gi|237752943|ref|ZP_04583423.1| flagellar hook-associated protein FlgK [Helicobacter winghamensis ATCC BAA-430] gi|229375210|gb|EEO25301.1| flagellar hook-associated protein FlgK [Helicobacter winghamensis ATCC BAA-430] Length = 608 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 57/461 (12%), Positives = 133/461 (28%), Gaps = 46/461 (9%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51 LL+ N NI NA+N+ Y R+ ++ + + Sbjct: 3 GLLSSLNTPYTGLTGHQVMVDVTGNNIANANNEFYSRQVVRSSAQTPLWKQNYALGQGLN 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 ++T + SS S + + ++ Sbjct: 63 ILTVERVHDEYSFMRYKKASSEKTFYDTSFSGLKEASAYY-PEVDGVGIYKDLQSYFNAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + S + + + A+ + +N + + ++ ++ + E+++ + + R ++ Sbjct: 122 KDLSTKAGDPAQKIALAEQAKTLTKNIQETRKSLEYLQQRLNDEMKVAVDEVNRLGEQIA 181 Query: 172 VVNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217 ++N I + A+D D RD +I+ +IG +N + D Sbjct: 182 ILNKQIAEYENQDMNKKANDLRDLRDQYEFEINNLIGCDVFKQNVQGSACVDKDIADFDD 241 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + G NS + ++ + +++ +GK+ ALL Sbjct: 242 DYTLTIGGKSIVDGTSFHPLVLDNSENPSGIYTIKYLRSDHKPYDLTNSLNQGKVGALLD 301 Query: 278 IRD-----------SVVPIFQNQLDEMARVLIGSFSEKD---------PIAGNSENVPGL 317 + + ++ N LD A +I + + + L Sbjct: 302 LIRTEDVLNCNGTLGKLQVYINDLDTFANGIIEATNNIYAESSQRSAKSDQLTLDARDAL 361 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + + L + + NV + + +N Sbjct: 362 TTSGYNVREGTFKVVMYDKDGKELGAREVTINNLTTMQDIVNQLNGNVDDN-KDGNPLND 420 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + D F + D T+ E SI N + + Sbjct: 421 FDDRFQAVYNNDSKTFSITSKNPAEDIFISIQDNGTNFAGA 461 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 81/275 (29%), Gaps = 2/275 (0%) Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 I + ++ L + N T + DG + + + + Sbjct: 333 IEATNNIYAESSQRSAKSDQLTLDARDALTTSGYNVREGTFKVVMYDKDGKELGAREVTI 392 Query: 267 VPKGKIKALLQIRDSVVPIFQN--QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 ++ ++ + V ++ L++ ++ + P I I+ Sbjct: 393 NNLTTMQDIVNQLNGNVDDNKDGNPLNDFDDRFQAVYNNDSKTFSITSKNPAEDIFISIQ 452 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + SN + + + G + N Sbjct: 453 DNGTNFAGAFGVNRFFDGNDASNIELAQQYREDPTLIRAYREAVDGNFVIANKMQQLQFD 512 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 F G T+ Y R G + + + V++ + Y V++ Sbjct: 513 KITFTDYKGEQREETISGYFRYIAGKVASETQATQTTQSTKEAVYSATKQEYKALCEVSV 572 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +EL LI+ + Y+ + K+I D+M+ TLL Sbjct: 573 DDELVNLIRFQSGYSANAKMITTIDEMINTLLGIK 607 >gi|306814075|ref|ZP_07448248.1| flagellar hook protein FlgE [Escherichia coli NC101] gi|305852712|gb|EFM53160.1| flagellar hook protein FlgE [Escherichia coli NC101] Length = 401 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNTFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +F V++SN + + G I Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|83720978|ref|YP_440808.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis E264] gi|167617593|ref|ZP_02386224.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis Bt4] gi|257140541|ref|ZP_05588803.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis E264] gi|83654803|gb|ABC38866.1| flagellar hook-associated protein 1 [Burkholderia thailandensis E264] Length = 667 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 57/461 (12%), Positives = 131/461 (28%), Gaps = 32/461 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V+ V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + L+A + + A I+ L++ Sbjct: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ +T + NA+ + + ++ ++R + ++ ++ + + S++ + Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I ++ + LDQRD+ + K+S+ G+ + N V+ + G L Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQFAGVQVVP-TNGSYSVFLAGGQPLVVGNAS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S +++ G + LL R + Q Sbjct: 240 YQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI---------- 338 QL +A + ++ + + PG + + S + Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGSPIVYANQGNTSSSTLSASIANGAQ 359 Query: 339 ----CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 Y + L D + S + D + Sbjct: 360 PPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTVL 419 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 T L ++ + + S + Sbjct: 420 PTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQ 460 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 46/427 (10%), Positives = 107/427 (25%), Gaps = 9/427 (2%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + S + S + S T + S + + ++ Sbjct: 239 SYQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQ 298 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG + A +V + + + S T+ Sbjct: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGSPIVYANQGNTSSSTLSASIANGA 358 Query: 181 TASKHDAHDFLD-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 D D + L + + + + N + +L T +F Sbjct: 359 QPPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTV 418 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + +G +++ + + QL L Sbjct: 419 LPTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQGAVSAGYQLPAGTTTLTY 478 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + S K + +S + + V Sbjct: 479 NASSKTLSGFPVGTTVTIAGTPPTSINITSATTPVSYDPTKGASLTISSTTQPAPSGVMN 538 Query: 360 KFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ D N ++ + + + N TL + + Sbjct: 539 GVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAI 598 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + I+++ + GVN EE + L++ +Q Y + K+I + + Sbjct: 599 GNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSV 658 Query: 472 LQTLLEG 478 QT+L Sbjct: 659 FQTVLGL 665 >gi|302037613|ref|YP_003797935.1| flagellar hook protein FlgE [Candidatus Nitrospira defluvii] gi|300605677|emb|CBK42010.1| Flagellar hook protein FlgE [Candidatus Nitrospira defluvii] Length = 407 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/480 (9%), Positives = 113/480 (23%), Gaps = 73/480 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M +L A ++ I NI N + + Sbjct: 1 MGILTSMFTAVTGLSSYGNAMGVIGNNIANVGTAGFKSSRATFSD--------------- 45 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 S Q L ++ S T ++ + Sbjct: 46 --LISSSLGGGSGSDQIGLGVFLNDVQTNFSQGSMTTTGNTFDLAIDGNGFYLVRNTSGA 103 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + + Q ++S +Q +AD + I I + Sbjct: 104 NFYSRAGQFKVDSLGQVVDSSGALLQGYQADTNGNITSTIGGI----------------- 146 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + ++ V T+ L Sbjct: 147 -----------------------------TLTSSAVPPVATTSAEILGNLNANATAPTAA 177 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 S T T+ N S+ G + ++ + Sbjct: 178 FSITDTTSYN--------FSTGMTFYDSLGNSHQMQLYFRKTAANAWGVYSQIDGGAAAA 229 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + A + G Q ++ + Q+ + Sbjct: 230 QTNMTFNASGAVTAGGTQTVTATLTNGATTPQAMTVDLSSLTQFGAASGVASQTQDGYSS 289 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + ++ ++ + + + ++ L+ N +LE S + Sbjct: 290 GTLDRISVDKEGRVMAQFTNGETRALAQVVLSRFTNPDGLVNVGDNH--FLETVESGAAL 347 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V+L +E +I ++++ +++ I +D+MLQ L+ + Sbjct: 348 AGAPTINGLGRVLSGTVEQSNVDLGKEFVDMIITQRAFQANSRAITTSDEMLQELVNLKR 407 >gi|149182512|ref|ZP_01860985.1| flagellar hook protein [Bacillus sp. SG-1] gi|148849772|gb|EDL63949.1| flagellar hook protein [Bacillus sp. SG-1] Length = 396 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/474 (9%), Positives = 120/474 (25%), Gaps = 78/474 (16%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 + N + I NI N + + + D + Sbjct: 1 MYSGISGMKNFQTKLDVIGNNIANVNTYGFKKGRVT-------------------FKDTM 41 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 S A Q ++ + + ++ + SL+S + L I G Sbjct: 42 NQTISGASAAQEARGGRNPMQVGLGSTLSTIDTIHT-----QSSLQSTGRPLDLAINGDG 96 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + Q ++ + +++ + + + VN + Sbjct: 97 YFVVKQGDAQFYSRAGNFYLDDNGTLVNGDGMKVQSYENGVLQDIKVNVNAQLPAKITES 156 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 F + + + + I+ + + + + + + F N T Sbjct: 157 ISMFGNLSNDAVGNEPFVQQINVVTNDGKQITLDMKLTPQGTPSTKWGMEFINQNGDTPL 216 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + + G V Sbjct: 217 NSAAYVLDFGNPV----------------------------------------------- 229 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + P ++ + S D + Sbjct: 230 ---DPAANPPNVDLPYTDSNGITQNLNVTMDYTQLTNLGGDLSAAADPDGNTAG-SLESF 285 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 N+ ++ Y + + +A + L + N + + S + ++++ + Sbjct: 286 NIGSMGEINGVYSNGEITTIGYLALAKFSNPSGLTKAGGN--SFQQSVNSGTPNVNVAGE 343 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 344 G-RGTIVSGSLEMSNVDLSEEFTEMISAQRGFQANTRIITTSDEILQELVNLKR 396 >gi|262166282|ref|ZP_06034019.1| flagellar hook protein FlgE [Vibrio mimicus VM223] gi|262025998|gb|EEY44666.1| flagellar hook protein FlgE [Vibrio mimicus VM223] Length = 421 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/471 (9%), Positives = 110/471 (23%), Gaps = 66/471 (14%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVTQRSENKNMFDKVL 67 + NI NA+ + + V + Sbjct: 3 LNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQ---QFHEGSS 59 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 ++ + + F A+ + SY +++ L Sbjct: 60 IYTNNPLDLRIAGTGFFAVAKDKIVPQQNE---LTRNGAFHLDKNSYMVTANDEFLLGY- 115 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 ++ D+ + E + A A+ Sbjct: 116 -------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPAN 156 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 + D + ++ ++ Y L + + T Sbjct: 157 GELKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQPNTWQTYYTVTDKTG 216 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 E + G S + D + N + L G + D Sbjct: 217 EKPINVVGGDATSPGGHVGHT------MRFNNDGTLASLNNGQPIVTEPLGGGTNPVDLN 270 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + Q +S ++ Q+ + + + + Sbjct: 271 GADV-------------------SQTLSFSLDSATQFAAPFELTKFDQDGATTGFLTKID 311 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ Y + N + + L + + W S ++ Sbjct: 312 FDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQFSGDKIWGESNKG 369 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F IS +++ +EL LI ++++ +++ + + + Q +L+ Sbjct: 370 SFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 420 >gi|218704484|ref|YP_002412003.1| flagellar hook protein FlgE [Escherichia coli UMN026] gi|293404360|ref|ZP_06648354.1| flgE [Escherichia coli FVEC1412] gi|298380140|ref|ZP_06989745.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300899595|ref|ZP_07117834.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218431581|emb|CAR12460.1| flagellar hook protein [Escherichia coli UMN026] gi|291428946|gb|EFF01971.1| flgE [Escherichia coli FVEC1412] gi|298279838|gb|EFI21346.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300356866|gb|EFJ72736.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 401 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D + A+ L A ++ S Sbjct: 202 KTGDNNWQVYTQDSSDPTGTADHAMT---------------------LVFNANGVLTSNP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + Q + + + K Sbjct: 241 TANITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVVTTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|121612241|ref|YP_999769.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157414368|ref|YP_001481624.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81116] gi|167004743|ref|ZP_02270501.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81-176] gi|87249055|gb|EAQ72017.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157385332|gb|ABV51647.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81116] gi|307747010|gb|ADN90280.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1] gi|315931630|gb|EFV10595.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 327] Length = 545 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227 IK + + + + + + + T DG + Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|167574701|ref|ZP_02367575.1| flagellar hook protein flgE [Burkholderia oklahomensis C6786] Length = 395 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 115/474 (24%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N + Q +I NI N + Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANF---------------------- 39 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G Q ++ + + + + ++ +K+ +L Sbjct: 40 ----ATMVAGAQPNGTYIGSITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYT 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V ++ L +L V N K + Sbjct: 96 RVGIFQRAADGYMVDGFGR------------RVQGYAANGVLGDLQVPNTVEPAKASDSI 143 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + L + + T ++ VY S G T Sbjct: 144 EYAGNLSADWKVPKNPKFDKDDDTSFNHSVSTTVYDSLGRKHVVTQYFVKQPAPSTDIDT 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G + GK+ Sbjct: 204 YYAMDNELVGGATPAKQTLKFDENGKL--------------------------------- 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P +A + ++ Q + + + + Sbjct: 231 -------TEPTAPVALDLGTPAGAGKLVVNVNYTGVMQVGGDSTTTTNNQNGYAAGTPGE 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ +++ Y + + +A + L W S + Sbjct: 284 PSIDEKGNVVVQYSNGQKRTVGTVALAAFASADGLTAVGD--TAWKASTASGNPLYGTPG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F+ ++ + ++ EL ++ +++Y ++K+I ++M+Q+L++ + Sbjct: 342 SGMFSKLATASLEMSNADVTRELVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395 >gi|302387788|ref|YP_003823610.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198416|gb|ADL05987.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 533 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 51/536 (9%), Positives = 134/536 (25%), Gaps = 67/536 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------------- 43 + I NI N + Y Sbjct: 4 SMFAGVAGLRTHQSKMDIIGNNIANVNTWGYKAASMSFKDTMYQTTSSSSGGSTKTGGYG 63 Query: 44 -TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-------- 94 T + + VT S + + + ++ + F + M++ Sbjct: 64 GTNAGQVGYGVTTGSISYDFGKGGMAPSANGLDCMIDGTGFFIVGPMINGGSLPLGEEDA 123 Query: 95 -HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 + + K + Y + S + + +F+T+A KI +D Sbjct: 124 LKSSGLYLSRVGKFQVDGNGYLTDDSGNYVYGFTRTGDLTDSTSFDTTALTPLKIPTKSD 183 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI------ 207 + + + + +A A + + D Sbjct: 184 MSKVSDKNATDKIADAKKKLEEARALFNAMDAELGNARDAYIAANDNYKTKYTAAGVDTA 243 Query: 208 --------STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP-------- 251 + + + + + + + +++K NS + +++N Sbjct: 244 KADMDAKKTAMDDAYRLWLEDKDNAAAKTDYLAKKTDYDKANSEFIVAQANVRKVTALAA 303 Query: 252 --IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + V++ + A + S+ + + Sbjct: 304 AKVTELNDAVTAYTTAYSAYIMSDASTDPNYETKKTAYTTAKAALDKIQTELSKIEDKSP 363 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN-- 367 + D + +++ + + G + + L + N Sbjct: 364 EGLRDSAKQVVDAATAKLAAAKTAVENAEKTLTTAQNSATSIAVGNAGADDTLATLTNYK 423 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL---LEYARNSIGWLEKNRSDSHDLHMK 424 + ++ + +AG+ L Y + Sbjct: 424 IQTDGTVVGTSEEGVTIVVGKIALAGVQNTGGLEKDSGYYYTLGANTGN------VSVYE 477 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +Y V+L E++ +I ++ + ++K+I TD+ML L+ + Sbjct: 478 GGGTDGRILGNYLEQAKVDLATEMTEMITTQRGFQANSKIITVTDQMLDELVNMKR 533 >gi|167567750|ref|ZP_02360666.1| flagellar hook protein flgE [Burkholderia oklahomensis EO147] Length = 395 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 39/474 (8%), Positives = 109/474 (22%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N + Q +I NI N + Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANF---------------------- 39 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + G Q ++ + + + + ++ +K+ +L Sbjct: 40 ----ATMVAGAQPNGTYIGSITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYT 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + N + Sbjct: 96 RVGIFQRAADGYMVDGFGR----------------------RVQGYAANGVLGDLQVPNT 133 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 +S + + + D ++ +S Sbjct: 134 VEPAKASDSIEYAGNLSADWKVPKNPKFDKDDDTSF----------NHSVSTTVYDSLGR 183 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 F+ S++ + E+ + Sbjct: 184 KHVVTQYFVKQPAPSTDIDTYYAMDN--------------------ELVGDAAPAKQTLK 223 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P +A + ++ Q + S + + Sbjct: 224 FDENGKLTEPTAPVALDLGTPAGAGKLVVNVNYTGVMQVGGDSSTTTNNQNGYAAGTPGE 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ +++ Y + + +A + L W S + Sbjct: 284 PSIDEKGNVVVQYSNGQKRTVGTVALAAFASADGLTAVGD--TAWKASTASGNPLYGTPG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +F+ ++ + ++ EL ++ +++Y ++K+I ++M+Q+L++ + Sbjct: 342 SGMFSKLATASLEMSNADVTRELVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395 >gi|86154050|ref|ZP_01072251.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842464|gb|EAQ59678.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 545 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227 IK + + + + + + + T DG + Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGIAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|91210228|ref|YP_540214.1| flagellar hook protein FlgE [Escherichia coli UTI89] gi|117623262|ref|YP_852175.1| flagellar hook protein FlgE [Escherichia coli APEC O1] gi|215486285|ref|YP_002328716.1| flagellar hook protein FlgE [Escherichia coli O127:H6 str. E2348/69] gi|218557958|ref|YP_002390871.1| flagellar hook protein FlgE [Escherichia coli S88] gi|237706938|ref|ZP_04537419.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|312968850|ref|ZP_07783057.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|91071802|gb|ABE06683.1| flagellar biosynthesis, hook protein [Escherichia coli UTI89] gi|115512386|gb|ABJ00461.1| flagellar biosynthesis, hook protein FlgE [Escherichia coli APEC O1] gi|215264357|emb|CAS08714.1| flagellar hook protein [Escherichia coli O127:H6 str. E2348/69] gi|218364727|emb|CAR02417.1| flagellar hook protein [Escherichia coli S88] gi|226898148|gb|EEH84407.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|294491293|gb|ADE90049.1| flagellar hook protein FlgE [Escherichia coli IHE3034] gi|307627454|gb|ADN71758.1| flagellar hook protein FlgE [Escherichia coli UM146] gi|312286252|gb|EFR14165.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|315287369|gb|EFU46780.1| flagellar hook protein FlgE [Escherichia coli MS 110-3] gi|323953238|gb|EGB49104.1| fagellar hook-basal body protein [Escherichia coli H252] gi|323957900|gb|EGB53612.1| fagellar hook-basal body protein [Escherichia coli H263] Length = 401 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +F V++SN + + G I Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|156976141|ref|YP_001447047.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|156527735|gb|ABU72820.1| hypothetical protein VIBHAR_04912 [Vibrio harveyi ATCC BAA-1116] Length = 399 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 49/474 (10%), Positives = 110/474 (23%), Gaps = 76/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + DH ++ + L Sbjct: 59 NFDKNGSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +DN + + + +I++ S+L ++ + Sbjct: 119 YSVDNNANL--------------QTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A D D S + L + F K + Sbjct: 165 QAIYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ G + + + P Sbjct: 209 QVNVEVDGAPTTPATAQTVQFNTDGTLASPTGSFNVAFPAA------------------- 249 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I ++ + Q+ + + + Sbjct: 250 ----------------------GANAMSIDISLNGSTQFGAAFGVSTNNPNGYTSGELAG 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L + + W + S + + + Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTAWTQSFSSGAPIMGVPG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V+L EL L+ +++Y + K I DK+ Q L V Sbjct: 346 TGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|28952050|ref|NP_240159.2| flagellar hook protein FlgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681699|ref|YP_002468085.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471395|ref|ZP_05635394.1| flagellar hook protein FlgE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624542|gb|ACL30697.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086078|gb|ADP66160.1| flagellar hook protein FlgE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086649|gb|ADP66730.1| flagellar hook protein FlgE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087235|gb|ADP67315.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087754|gb|ADP67833.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 408 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60 A + + I NI NA Y R + N V S + Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 N + +L + + F L + + + + N+ Sbjct: 65 NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L ++ N + L + + N I Sbjct: 119 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 152 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + R+ + + + + + E + N ++ Sbjct: 153 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 212 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 N +TV ESN + +S + G++ Sbjct: 213 NKWTVNVESNDSDDKETIKNSFDLTFNDDGEL---------------------------- 244 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + K Q S+ S+ + + Sbjct: 245 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 290 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++I YC+ + ++ L + N ++ Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 349 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S V+L +EL +I +++Y + + DK++ TL+ Sbjct: 350 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 407 >gi|324113871|gb|EGC07845.1| fagellar hook-basal body protein [Escherichia fergusonii B253] gi|325497616|gb|EGC95475.1| flagellar hook protein FlgE [Escherichia fergusonii ECD227] Length = 401 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 106/473 (22%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N I+ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDIAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + N + Sbjct: 97 NGQFKLDENRNLVNMQGLQLTGYPAAGTPPTIQQ------------GANPTNISIPNTLM 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + S+ + +N T+F++ + T Sbjct: 145 AAKTTTTAAMQINLNSSDPLPTVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTK 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + Q+ D ++ + E + Sbjct: 205 DNTWQVYT---------------------------------QDSSDAASKATAATTLEFN 231 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + I + Q + + + K Sbjct: 232 ANGMLVKGETANITTGAINGAVPAT--FSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQASGVALLGTAG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|295678051|ref|YP_003606575.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1002] gi|295437894|gb|ADG17064.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1002] Length = 664 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 54/411 (13%), Positives = 124/411 (30%), Gaps = 18/411 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53 + N + N A + NI NA Y + + V+ Sbjct: 3 SNLLNIGLSGLNAAQWGLTTTGENISNASTPGYTMETPVFSEVGGNYTGSGYLPMGVSTD 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T L+ S + + + IS L++ Sbjct: 63 TVTRAYSQYLTTELNTAQSWSSSLGTYNTMISQLNNLVGSPT--GGIASAISGYFTGLQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S +T I A+ + N + ++ ++RA + ++ ++ + F +++ + Sbjct: 121 VANDASSVSTRQTAISAAQTLANQINAAGQQYDQLRASVNTQLSDAVTQINTFTAQIASL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I ++ + LDQRD+ + +S++IG+S + ++N ++ S+G L Sbjct: 181 NTQITQASSQGQPPNQLLDQRDLAVSNLSQLIGVSVV-QDNGSYSLFMSNGQPLVLAGNS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +S + + ++V G + LLQ R + + Sbjct: 240 FNLGTATSSGDPSELSVQYLGQAGAKATPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + G + Q ++ Sbjct: 300 QLGAIATSFAAQVNAQNELGLTLNGTAGGALFTVGSPTVYANSQNSGTATLGVSFANASQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D + + + + + + + VA N Sbjct: 360 PTTGDYTLSYNGSAYTLTDNQTGSIVGSAADLTNPIGGLQFSVASGTMNAG 410 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/427 (8%), Positives = 98/427 (22%), Gaps = 19/427 (4%) Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L +S+ L + + S T L + + + Sbjct: 241 NLGTATSSGDPSELSVQYLGQAGAKATPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEAQ 300 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + +F ++ + + + N S Sbjct: 301 -----LGAIATSFAAQVNAQNELGLTLNGTAGGALFTVGSPTVYANSQNSGTATLGVSFA 355 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 +A L S + ++ + +S+TV Sbjct: 356 NASQPTTGDYTLSYNGSAYTLTDNQTGSIVGSAADLTNPIGGLQFSVASGTMNAGDSFTV 415 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + ++ A + + I Q + + + Sbjct: 416 EPTRGALNGFALTTTAASAIAAAAPVLASASTSNTGSATITQGTVSAGYSAPTSTSTITY 475 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--- 362 P + + + + + + + Sbjct: 476 TAGTGLTGFPIGSVVTVAGSPSTSYTINTATDAVPYSPNSGATLTITNPTNSTSAGVMNN 535 Query: 363 -----------WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + N ++ + + TL + + + Sbjct: 536 VTVTISGTPADGDSFTIGPNTGATNDGRNAQLLSNLTKAQVLAGGTATLTNAYASYVNNI 595 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + I+ + + GVN+ EE + L++ +Q Y ++K+I + Sbjct: 596 GNQATQIQAMATTQTSLVTQITSAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTL 655 Query: 472 LQTLLEG 478 QTLL Sbjct: 656 FQTLLGI 662 >gi|86149558|ref|ZP_01067788.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839826|gb|EAQ57085.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] Length = 545 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227 IK + + + + + + + T DG + Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVFTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|16129039|ref|NP_415594.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|89107922|ref|AP_001702.1| flagellar hook protein [Escherichia coli str. K-12 substr. W3110] gi|170080727|ref|YP_001730047.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188492271|ref|ZP_02999541.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238900330|ref|YP_002926126.1| flagellar hook protein [Escherichia coli BW2952] gi|256023226|ref|ZP_05437091.1| flagellar hook protein FlgE [Escherichia sp. 4_1_40B] gi|300950171|ref|ZP_07164116.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|300954384|ref|ZP_07166838.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|301029709|ref|ZP_07192763.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|301644988|ref|ZP_07244954.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307137711|ref|ZP_07497067.1| flagellar hook protein FlgE [Escherichia coli H736] gi|331641620|ref|ZP_08342755.1| flagellar hook protein FlgE [Escherichia coli H736] gi|2494529|sp|P75937|FLGE_ECOLI RecName: Full=Flagellar hook protein flgE gi|1787316|gb|AAC74160.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|85674830|dbj|BAA35885.2| flagellar hook protein [Escherichia coli str. K12 substr. W3110] gi|169888562|gb|ACB02269.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188487470|gb|EDU62573.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238861108|gb|ACR63106.1| flagellar hook protein [Escherichia coli BW2952] gi|260449784|gb|ACX40206.1| flagellar basal body FlaE domain protein [Escherichia coli DH1] gi|299877397|gb|EFI85608.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|300318620|gb|EFJ68404.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|300450518|gb|EFK14138.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|301076717|gb|EFK91523.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|309701348|emb|CBJ00649.1| flagellar hook protein FlgE [Escherichia coli ETEC H10407] gi|315135708|dbj|BAJ42867.1| flagellar hook protein FlgE [Escherichia coli DH1] gi|315618246|gb|EFU98836.1| flagellar hook protein flgE [Escherichia coli 3431] gi|323937816|gb|EGB34080.1| fagellar hook-basal body protein [Escherichia coli E1520] gi|323942545|gb|EGB38712.1| fagellar hook-basal body protein [Escherichia coli E482] gi|331038418|gb|EGI10638.1| flagellar hook protein FlgE [Escherichia coli H736] gi|332342622|gb|AEE55956.1| flagellar hook protein FlgE [Escherichia coli UMNK88] Length = 402 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|307310146|ref|ZP_07589796.1| fagellar hook-basal body protein [Escherichia coli W] gi|306909864|gb|EFN40358.1| fagellar hook-basal body protein [Escherichia coli W] gi|315060354|gb|ADT74681.1| flagellar hook protein [Escherichia coli W] gi|320200972|gb|EFW75556.1| Flagellar hook protein FlgE [Escherichia coli EC4100B] gi|323379085|gb|ADX51353.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 402 Score = 107 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + Q + + + K Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|331662482|ref|ZP_08363405.1| flagellar hook protein FlgE [Escherichia coli TA143] gi|284920899|emb|CBG33962.1| flagellar hook protein FlgE [Escherichia coli 042] gi|331060904|gb|EGI32868.1| flagellar hook protein FlgE [Escherichia coli TA143] Length = 402 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKATTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + Q + + + K Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|225375330|ref|ZP_03752551.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM 16841] gi|225212819|gb|EEG95173.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM 16841] Length = 550 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 40/550 (7%), Positives = 115/550 (20%), Gaps = 72/550 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------ISP 47 ++ A + + I NI N + + + + Sbjct: 1 MMRSMYSAVSGLKTHQTRMDVIGNNIANVNTVAFKSSSVTFSDILYQTTSNASGANATTG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE----MMSADDHYNNSPTHY 103 Q + S+ + L + ++ + + Sbjct: 61 TGGVNAKQIGLGTTAAATKVSITSAGASETTGNPFDIRLTDKNSTNFFIVNNGSENVFTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-- 161 S + +T + + E Sbjct: 121 SGSFYVDGSGNLCMSSTGYTVMGWQVDETTGEIRKDTVSALRIMQEKNLTSAPEATTQAT 180 Query: 162 ----------------------NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 N L AIK + D + Sbjct: 181 IAGVLDENDTDVKNDAGRVMNLNFYDNLGYQYTAKFAIKSTGTDGKYTVELTSVLDSNNK 240 Query: 200 ----KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 +++ + + + + ++ D +E + + Sbjct: 241 NIIADLNKQQIAQIFGNYDANATLGQYSLSKDYKYNDADQTYEDSTGKKFKPSATDSTVF 300 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 + ++ I ++V N + + + + E Sbjct: 301 EEQGNPTNKVSITDIFSGITTTIANNVKNNTNNYQLAFDAQTGHATLTGEQTSYDLEFDT 360 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 I + + ++ N + S + K+ G Sbjct: 361 SSGKFKSIGGENPSVMLNMAALSSGLINTNGNFQNITVDFSQCLNYENGGKSTIGADAGA 420 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS---------- 425 + I+T+ + N L + + + Sbjct: 421 VDGTTGKGRKLGAMTGIFIDTSGRIYGTYDNGNTELLGQIAVAQFSNASGLEKVGESCYR 480 Query: 426 ---------------QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + ++ V+L E + +I ++ + ++++I +D Sbjct: 481 TTLNSGEFDGIGVEISADGSSMTTGELEMSNVDLSSEFTSMITTQRGFQANSRVITTSDT 540 Query: 471 MLQTLLEGVK 480 +L+ L+ + Sbjct: 541 LLEELVNLKR 550 >gi|57237057|ref|YP_178069.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88597731|ref|ZP_01100964.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|205356434|ref|ZP_03223198.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561735|ref|YP_002343514.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165861|gb|AAW34640.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88190035|gb|EAQ94011.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359441|emb|CAL34223.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345621|gb|EDZ32260.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|315929148|gb|EFV08373.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 305] Length = 545 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227 IK + + + + + + + T DG + Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|153831673|ref|ZP_01984340.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269960116|ref|ZP_06174492.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] gi|148872183|gb|EDL71000.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269835087|gb|EEZ89170.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] Length = 399 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 49/474 (10%), Positives = 110/474 (23%), Gaps = 76/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + DH ++ + L Sbjct: 59 NFDKNGSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +DN + + + +I++ S+L ++ + Sbjct: 119 YSVDNNANL--------------QTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A D D S + L + F K + Sbjct: 165 QAVYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ G + + + P Sbjct: 209 QVNVEVDGAPTTPATAQTVQFNTDGTLASPTGSFNVAFPAA------------------- 249 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I ++ + Q+ + + + Sbjct: 250 ----------------------GANAMSIDISLNGSTQFGAAFGVSTNNPNGYTSGELAG 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L + + W + S + + + Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTAWTQSFSSGAPIMGVPG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ V+L EL L+ +++Y + K I DK+ Q L V Sbjct: 346 TGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|302387756|ref|YP_003823578.1| flagellar hook-associated protein FlgK [Clostridium saccharolyticum WM1] gi|302198384|gb|ADL05955.1| flagellar hook-associated protein FlgK [Clostridium saccharolyticum WM1] Length = 680 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 59/481 (12%), Positives = 133/481 (27%), Gaps = 59/481 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 S + F AQ + + + +NI N + K Y ++ Sbjct: 4 STFSGFTIAQLAMSASQRALDVTGQNIANINTKGYTKQQLDLVSLNLRGGEVVSTGPASK 63 Query: 47 -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + D + +G Q + + + +S Sbjct: 64 IGYGVEITGISQIRDPFLDVQYRNQIAKVGTADAHQGTLDQLADIFDETDKDA-LKKALS 122 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-ISNLR 164 L SL+ S N + V + ++ + + E+ +R + +E I + Sbjct: 123 DLSSSLDKLSSNANNGEFDSIVRSRCQVLLNYIHQKSSELTSVREETISGLEKTDIPTVN 182 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 LS++ +NDAI + A + DQR++ L +++ + IS + Sbjct: 183 GLLSDIGELNDAIWKSQVLGNPALELQDQRNLKLDELASYLPISVSYKEVTISSDTRLSY 242 Query: 225 TTL----------------FETVPRDINFEKMNSYTVTSESN-----------PIFIDGV 257 + ++ E+ + P D Sbjct: 243 PVVKFIGSDGMTYNLTAGEHGENTASLSSERNKGIDGNYNGHISISLIPASDFPSNTDVS 302 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSV------------VPIFQNQLDEMARVLIGSFSEKD 305 + ++ + +G +K L+ + + + ++ D + +F++ + Sbjct: 303 PLKTDITGYLKEGSLKGLVDVLNKSGELDNPATDYRGIGYYEKSFDAFVQTFAETFNKLN 362 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVSKKFLW 363 V G+ K+L + + +I + N + G Sbjct: 363 TNTFPYTGVTGVPANGVPKELTSTGSEKAEYSISFLNSTGNFLNKEKININGQTYTFGDG 422 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + P L +K P +N T + + S + Sbjct: 423 TGGTVEIGPSLEGSLVKLVDKLNTDAPNMTVNGASTPGSWNYQASTGKLIWTSTAPLTAG 482 Query: 424 K 424 Sbjct: 483 T 483 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/417 (10%), Positives = 109/417 (26%), Gaps = 15/417 (3%) Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + S + + + + +S + +S L+ + Y K S L + Sbjct: 265 NTASLSSERNKGIDGNYNGHISISLIPASDFPSNTDVSPLKTDITGYLKEGSLKGLVDVL 324 Query: 128 IDNAE-EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + E + +K + + L T V + Sbjct: 325 NKSGELDNPATDYRGIGYYEKSFDAFVQTFAETFNKLNTNTFPYTGVTGVPANGVPKELT 384 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE-KMNSYTV 245 + + S ++ N N DGT + + + Sbjct: 385 STGSEKAEYSISFLNSTGNFLNKEKININGQTYTFGDGTGGTVEIGPSLEGSLVKLVDKL 444 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +++ + ++G + GK+ + + Sbjct: 445 NTDAPNMTVNGASTPGSWNYQASTGKLIWTSTAPLTAGTE--------INSTSIQAGDGT 496 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + P + + + I ++ + +N + + N Sbjct: 497 KFSLTYKADPLNIKNFDLFKTSDGSKIFTASNIKISDDWMNNTIHIISSHDENAGSTAND 556 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-----LLEYARNSIGWLEKNRSDSHD 420 + L + + +T + N + S + Sbjct: 557 NIIRMIKSLTEERDFKYEYTYKDKNGIPQTGTITYYNGNFSQCYSNLENIQGIDSSANKA 616 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + V + S GV+L EE L++ ++SY + +L+ D++L L+ Sbjct: 617 ILSNHISVLKQTANSKDAVSGVSLDEEGINLMQFQRSYTAAARLMTTLDEVLNVLIN 673 >gi|157373207|ref|YP_001471807.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157315581|gb|ABV34679.1| flagellar basal body FlaE [Shewanella sediminis HAW-EB3] Length = 398 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 49/474 (10%), Positives = 119/474 (25%), Gaps = 77/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI N+ Y + + + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGYRGGRSEFSAVYNGGQAGGVNVMS---TSQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S + R L ++ + Y + + + L Sbjct: 59 NFSMGGSLVYTGRELDMGIQGDGFFVLSGQDGSTLYSRAGMFSQDADGYITDPAGNRLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ + ++Q + ++ + + + + Sbjct: 119 YPVGAGGQLQTGNVS---DLQVQSGSLPAKATTDVGVVSNLDASMEPI-----------D 164 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D D+ S + + + N + + Y + + Sbjct: 165 QTTTPFDPDDISSYHSSGTVAVYDSLGNEHALTQYY-----------------VKTNDSP 207 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + +DG V +N+ KG + + ++ Sbjct: 208 SEWNVHYMMDGKDVGTNKLEFDDKGALTGGENVTLNLGTP-------------------- 247 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + QY S+ S + N Sbjct: 248 ---------------------GGAAPMSLDLSYKNSTQYASDYSNSSLTQNGYTSGELNG 286 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L + Y + + +A N L ++ W N + + + Sbjct: 287 VRLDDNGMVYGTYTNGQEQIQGQVVLADFNNPNGLTPV--SNNAWAATNAAGQPIVGAPT 344 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 345 TGTLGSVSGGYLEGSNVDTTAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 398 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 242 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 301 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N Sbjct: 302 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 355 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q+ + I + + + +N Sbjct: 356 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 399 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 400 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 441 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 442 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 481 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 482 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 527 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + + +A N L N W S L Sbjct: 528 LVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 585 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L T + Sbjct: 586 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 641 >gi|311280017|ref|YP_003942248.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] gi|308749212|gb|ADO48964.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] Length = 402 Score = 107 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 106/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D A+ F L D + + + N+ Sbjct: 62 TDGTTTNTGRALDVAISQNGFFRLV------DSNGSVYYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L Sbjct: 116 LTGYPATGT----------------------------------------------PPTIQ 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ K + + + + + T T ++ + + +S Sbjct: 130 QGANPVALNVPNTLMAAKTTTTAAMQINLNSTDKTPTVTPFDATKADSYNKKGSVTVYDS 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + N F+ + + + + ++ L V I + Sbjct: 190 QGNAHDMNVYFVKSADNTWDVYTQDSSTNAVSPTTPSTTLTFDTNGNLLSGGTVNITT-- 247 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 Q + + + + K Sbjct: 248 --------------------GTVNGATPATFALSFANSMQQNTGSNNIVATNQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLQSEGDNV--WSATKSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|167835119|ref|ZP_02462002.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis MSMB43] Length = 667 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 52/410 (12%), Positives = 125/410 (30%), Gaps = 18/410 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53 + N + N A + +NI NA Y + + P+ V+ V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L+A + + A I+ L++ Sbjct: 63 TVQRQYNQYLSDQLNAAQTQGNALSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N ++ +T + NA+ + ++++ ++R + ++ + + + S++ + Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAASQQYSQLRQSVNSQLTDSVKQINSYTSQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N+ I ++ + LDQRD+ + +S++ G+ + ++N V+ + G L Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVV-QSNGSYSVFLAGGQPLVVGNMS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S +++ G + LL R + Q Sbjct: 240 YQLAAVASKSDPSELTIVSNGIAGANPQGSPQYLPDASLSGGTLGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + + PG + S Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFAVGSPTVYANQGNTSGATLTASIADGTQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + A + S + T+ Sbjct: 360 PPSSDYSLSYDGSKYTLTDRATGSVVGTATSTSTPPTMTIGGLNLSLTST 409 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 77/257 (29%), Gaps = 4/257 (1%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D T+ T F + + + +++ A+ +G + A Q+ Sbjct: 413 GDAFTVLPTRGALEGFALATANGSAIAAASPVLAAAAPTNSGTGAISQGSVSAGYQLPSG 472 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + N + + + D IS T Sbjct: 473 TTTLTYNASSKTLSGFPVGTTVTIAGTPPTSIDITSATTPVPYDPSKGASMTISSTTQPA 532 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 P N + G+ + + + G D ++ + + + N TL Sbjct: 533 PSGVMNGVSVSLSGTPADGDQFTIGANKGTNDG----RNALALSQLVNSKTMNNGTATLT 588 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + S + I+++ + GVN EE + L++ +Q Y + Sbjct: 589 GAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQAN 648 Query: 462 NKLIMFTDKMLQTLLEG 478 K+I + + QT+L Sbjct: 649 AKVIQTANSVFQTVLGL 665 >gi|332088750|gb|EGI93862.1| flagellar hook protein flgE [Shigella boydii 5216-82] Length = 401 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 109/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLYVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D + A+ L A ++ S Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ G + + Q + + + K Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|148926857|ref|ZP_01810535.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] gi|145844434|gb|EDK21542.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] Length = 545 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 56/545 (10%), Positives = 135/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162 + + + T+ + + + + +++ Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204 + +L N + D I S+ Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 S + + +G T+ T+ ++NF+ + N I +D +S+ Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNEFDLKGLDENSIKLDTAQISTE 300 Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|318604252|emb|CBY25750.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] Length = 397 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 54/472 (11%), Positives = 115/472 (24%), Gaps = 78/472 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + ++Q +I NI N+ K + T Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMY------------------ 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S +G S K+ + + ++ + Sbjct: 44 ---AQSQPLGVGVSGTSQSIKKDGSIDRTGNAMDLAISGNGFFV----VKNSSGDEAYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ N S ++Q ADA ++ I + + Sbjct: 97 AGMFTTDKNGVLVNASGMKLQGYPADAAGNVQTGI--------------VSDLKISTVGL 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + S + + +T ++++ R+ + Sbjct: 143 PAKATSKLGFMANLPASAKQPTNATFSIGSKDSYNFMSTSTTYDSLGREHLLTQYFVKQA 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + D + L ++ S + K Sbjct: 203 GAGDWKV-----------------------HYAVDGAANSGAHDLKFDTSGVLTSGNSKT 239 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G GI T Q+ + N Sbjct: 240 ITGG--------------YTPVGADNYGIDITYTGTTQFHAEFLPAPSKSDGYTAGTKNG 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + + +A L +N W +RS + L Sbjct: 286 ERIENDGSVYATFSNGKQMLQGKLVLANFANPNGL--ATQNGTTWSVTSRSGAPLLGSPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +I V+L EL L+ +++Y + K+I D M+ L + Sbjct: 344 TGLLGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395 >gi|88811801|ref|ZP_01127055.1| flagellar hook protein [Nitrococcus mobilis Nb-231] gi|88791192|gb|EAR22305.1| flagellar hook protein [Nitrococcus mobilis Nb-231] Length = 400 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 44/473 (9%), Positives = 101/473 (21%), Gaps = 75/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F A N AS N+ N+ + V T + Sbjct: 2 SFETALTGLNAASADLDVTGNNVANSATTGFKSSRAEFADIYALSNVGTAQ--------- 52 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ N + + Sbjct: 53 --------------------------TSIGQGVRLAAVTQQFTQGQFDFTGNTLDLAVNG 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + Q R + + N + S + + + Sbjct: 87 TGFFALNANGTTAYSRNGAFQLDRDGFIVDADGHRLNGYQAGSNGAISGALGDLQVNIGN 146 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + + I T + S TT+++ +D Sbjct: 147 VAPQATANIGLSANLDARAATIPTAFDAADPATYNFSTSTTVYDAQGKDHFATLYFQKQS 206 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + + V + + Sbjct: 207 DNVWDIYADGDDGTGAKDPATVTFDSRGEFVSATGATT---------------------- 244 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + IS QY S + Sbjct: 245 ----------------YSFNYAGAGTSNISVDYSSLTQYGSVFDVKELSQDGFSTGQFTN 288 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + L+ + + ++ ++ + +L + W E S + Sbjct: 289 LGVEDDGRLLARFTNGQSQTLGQIALSRFPSPQSLQQIGD--THWAETFASGAPVTAAPG 346 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I VNL E+L +I ++++ ++++I D++ Q++L Sbjct: 347 SSGVGTIQGGALEKSNVNLTEQLVHMITAQRNFQANSQMISTQDQITQSILNI 399 >gi|320173529|gb|EFW48725.1| Flagellar hook protein FlgE [Shigella dysenteriae CDC 74-1112] Length = 402 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S +A Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKTATT---------------------------------- 227 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G N + + Q + + + K Sbjct: 228 LEFNANGTLVNGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFATLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|167585200|ref|ZP_02377588.1| flagellar hook-associated protein FlgK [Burkholderia ubonensis Bu] Length = 656 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 50/408 (12%), Positives = 121/408 (29%), Gaps = 18/408 (4%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56 N + N A + NI NA Y + + P+ V VT + Sbjct: 1 MNLGISGLNAAIWGLTTTSNNIANAATPGYTIERPVYAEASGQYTGSGYLPQGVNTVTVQ 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L++ + G + A + I+ L++ + Sbjct: 61 RQYSQYLSDQLNSAQTQGGALSTWNTLVAQLNNYVGSPTA--GISTAITNYFTGLQNVAN 118 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 ++ + +T + NA+ + + + +R + ++ ++ + + +++ +N Sbjct: 119 KAADTSVRQTAMSNAQVLADQLKAAGAQYDALRQSVNTQLSATVAQINTYTTQIAQLNQQ 178 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + + +DQRD + +S + GI + RN+ V+ + G L Sbjct: 179 IATAGSQGQPPNQLMDQRDQAVSNLSSLAGIQVV-RNDQGYSVFMAGGQPLVVADKSYTL 237 Query: 237 FEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 +S + S+ + +++ G + LL R + Q QL Sbjct: 238 AAVTSSSDPSELTIVSQGIAGANPPGPNQALPDASLSGGTLGGLLAFRRQTLDPAQAQLG 297 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A + ++ + + PG + + Sbjct: 298 AIATSFAAQVNAQNALGVDLSGNPGGNLFSTGSPTVFANQANTGNATLNVSFANPSQPTT 357 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D + + + A + + + + N Sbjct: 358 SDYSLSYDGAKYTLTDRANGSVVGTSTSMPGSIGGLNFSFSSGTMNAG 405 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 41/425 (9%), Positives = 98/425 (23%), Gaps = 5/425 (1%) Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 +K+ + + S + Q + S + + + + Sbjct: 231 ADKSYTLAAVTSSSDPSELTIVSQGIAGANPPGPNQALPDASLSGGTLGGLLAFRRQTLD 290 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ LG A V N ++ + + +N + Sbjct: 291 PAQAQLGAIATSFA-AQVNAQNALGVDLSGNPGGNLFSTGSPTVFANQANTGNATLNVSF 349 Query: 178 KFKTASKHDAHDFLDQRDVL----LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + + S + +++ + + S GT Sbjct: 350 ANPSQPTTSDYSLSYDGAKYTLTDRANGSVVGTSTSMPGSIGGLNFSFSSGTMNAGDSFT 409 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + +N I + S G K + I Sbjct: 410 VLPTRGALGGFSLATANGSAIAAASPVAVSASGTNTGTGKITQGAVTAGYQIPAGGTTLT 469 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + S + + + Sbjct: 470 YDATTNTLSGFPAGTTVTIAGTPPTTVPIAGPTTAVPYTPATGATMTMTGTAAGAINGVT 529 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + Y + ++ + + N TL N + + Sbjct: 530 ITLSGTPSTGDTFKIGPYSGGTSDGSNALALSQLVTAKTLGNGTTTLTGAYANYVNGIGN 589 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + I+++ GVN EE + L++ +Q Y + K+I + Q Sbjct: 590 TASQLKSSNAAQTALVGQITKAQQEVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQ 649 Query: 474 TLLEG 478 T+L Sbjct: 650 TVLGL 654 >gi|261856360|ref|YP_003263643.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] gi|261836829|gb|ACX96596.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] Length = 418 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 44/483 (9%), Positives = 109/483 (22%), Gaps = 77/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 FN + N A + NI NA++ + V Sbjct: 2 SFNTSITGLNAAQKDLDVTSNNIANANSTGFKSSRAQFGDIYAVSAYGNSKTATGQGVLT 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L ++++ Q F S L + + + Sbjct: 62 EAVQQQFTQGSLQFTNNSLDLAISGQGFF----TFQPTLDSLQSVYSRAGALGANKDGFI 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L + + SA+ +Q A + ++ + TV Sbjct: 118 VNTNGQYLKALPVSANGTLQSTSLASAKPIQLPVAAGAPKATTLVTQSFNLPASATVP-- 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + T + ++ +++++ Sbjct: 176 ---------------------------TVTPFDTTQATPDPASYTQANSQQVYDSLGNTH 208 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 T ++ +Q + Sbjct: 209 TLTSYYVKTANPNEWNVY--------------------------------YQVDTQTPIQ 236 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + +T + QY + + Sbjct: 237 GPSTLTFDANGQLPTTPAPFAVTATAASLGTGAAPLNINVQTQGDSTQYNAPFNMAAQSQ 296 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ + Y + N +A + L + N W E Sbjct: 297 DGNTTGQLTGVSVGSNGLIQASYSNGQNIPLGMVALANFSNPQGLKQVGNN--SWAESVD 354 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + F I V+L ++L LI ++++ + + I ++ Sbjct: 355 SGAPTAGQPGTGTFGLIQGGALEQSNVDLTQQLVNLITAQRNFQANAQAIQTDKTATDSV 414 Query: 476 LEG 478 + Sbjct: 415 INI 417 >gi|228964720|ref|ZP_04125827.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar sotto str. T04001] gi|228794970|gb|EEM42469.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar sotto str. T04001] Length = 287 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 85/284 (29%), Gaps = 16/284 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + + A ++IE ++ R + Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L N I A + LD+RD ++ ++S+ I + N + L Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVLT 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + S V + + + K KI Sbjct: 237 VNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAKI 280 >gi|188580157|ref|YP_001923602.1| hypothetical protein Mpop_0889 [Methylobacterium populi BJ001] gi|179343655|gb|ACB79067.1| protein of unknown function DUF1078 domain protein [Methylobacterium populi BJ001] Length = 460 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 51/492 (10%), Positives = 119/492 (24%), Gaps = 44/492 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + S ++I NI N+ Y R DT + +Q + + Sbjct: 1 MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDARSQTAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----------ADDHYNNSPTHYISKLRD 109 F ++ ++ + + + A+ N + Sbjct: 61 AAFSELTNSVQGNKVSTGVSTNMALDGQGFFVVRKKTTDAGGAESFSNANLFTRRGDFAP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D I A I + + + Sbjct: 121 DKDGYLVNGAGAYLVGASLDPVTGQTTGTGPIKISNAIIPAKPTTTITYSANLPKSPATT 180 Query: 170 LTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + + D + + + VYT+ G + Sbjct: 181 NAASTGGLLSAFSDGTDPRVTPANGATTGTVSEANAQSFIDNSIAGPALTVYTASGAPVS 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + N D V+ NQ S G+ Sbjct: 241 VQSRWAKVAAADTATGTSDTWNLFTADKTSVTGNQTSWTNIGQ----------------- 283 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +FS + + + ++ +S + Sbjct: 284 ---------AFAFSASGQMTAPTGKTVPINNLTVDGVNVGQVTLDLSGGLTQYAAASGTV 334 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + N + + Y + VA L + Sbjct: 335 TTNDLKQNGYASGSLNSVEVGDNGLISGKYSNGSVIGLARVEVAQFVNPDGLKPDS---- 390 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 L + + + + + ++ E S +I +Q+Y+ + +++ Sbjct: 391 --LGNYEQTVASGEAINGLKDSTVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTA 448 Query: 469 DKMLQTLLEGVK 480 M+ LL ++ Sbjct: 449 QTMISDLLNVIR 460 >gi|157147102|ref|YP_001454421.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] gi|157084307|gb|ABV13985.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] Length = 396 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 52/479 (10%), Positives = 116/479 (24%), Gaps = 89/479 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 FN A + N ++Q +I NI N+ + + P V V Sbjct: 2 SFNIATSGLNAITEQLNAISNNIANSGTVGFKSGRAEFSSLYAESQPLGVGVSGVTQSIT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + ++ + Sbjct: 62 R------------------------------GGNISTTGNALDLAISDSGFFMVRDSTGT 91 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + N +Q +A+ EIE+ S Sbjct: 92 TAYTRAGYFGTDSSGNLINNLGMYLQGYPVNANGEIEVGTIGNLTISSGSIPAKATDSLD 151 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + DA + K S + + +F+++ R+ + Sbjct: 152 FTANLDARAAEPETAPFNPKDSTSYNNTYTTQ--------------VFDSLGREHTLNQY 197 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T + + + D +P ++ + ++ S Sbjct: 198 FVKTGENTWQVHYY-----------------------MDDVEIPDSSQAIEFTEQGVLKS 234 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + L I QY S+ S ++ S Sbjct: 235 PVGLTNLTTSISGAADLSIDLSYNGT---------------SQYGSDFSVSKNNSSGYAS 279 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + + + +A L ++ W++ S + Sbjct: 280 GERTGQAIDEDGSVYATFSNGERMLQGQLVLANFANPNGLAS--KDGTTWVQTASSGAPL 337 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + V+L EL L+ +++Y + K+I D M+ L + V Sbjct: 338 TGTPGTGLLGSVKSGALESSNVDLTSELVGLMTAQRNYQANTKVISTNDNMMNALFQAV 396 >gi|307731356|ref|YP_003908580.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1003] gi|307585891|gb|ADN59289.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1003] Length = 657 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 120/411 (29%), Gaps = 18/411 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + S V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT + L+ S+ S + + I+ ++ Sbjct: 61 VTVTRQYSQYLTTQLNDAQSSSSSLATYNSLISQLNNLIGSPTA--GIASAITSYFTGMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N S +T + A+ + N + ++ +R + ++ +S + + ++ Sbjct: 119 NVSNNASSLATRQTAMSGAQTLANQINAAGQQYDALRQSVNTQLNNTVSQINSYTQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LDQRD+ + +S++IG+ + +N V+ S+G L Sbjct: 179 LNGQINAASTQDQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGAYSVFMSNGQPLVSGGN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + S + G + L+ R + + Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQDLPDSKIEGGTLGGLVAFRSQTLDPAE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL +A + ++ + V G + Q + Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLSVSFADAT 357 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + + + + S N + G Sbjct: 358 QPTTGDYTLAYNGSSYTLTDNSTGKVVGSASNLSQPINGLNFSTTGTMNAG 408 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 41/421 (9%), Positives = 100/421 (23%), Gaps = 2/421 (0%) Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + + D ++ + S + + Sbjct: 236 GNSFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQDLPDSKIEGGTLGGLVAFRSQTLDP 295 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 +E LG + A V N + ++ A + + ++ + Sbjct: 296 AEAQLGAIAVSFA-SQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLSVSFA 354 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + + + N + + + TT E Sbjct: 355 DATQPTTGDYTLAYNGSSYTLTDNSTGKVVGSASNLSQPINGLNFSTTGTMNAGDSFTVE 414 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + + +S A +V + Sbjct: 415 PTRGALNSFATATTDAAAIAAASPVLGAAASTNTGTGAISSGTVTAGYTMPSSTTTLTYN 474 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSV 357 G+ P+ I + S + + Sbjct: 475 GTGLTGFPVGSTVTVAGSPATTYPITSATTVVPYSSSTGATLTINNTTAGQMNNVSVTIS 534 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + N ++ + + + VTL N + + + Sbjct: 535 GVPAAGDKFTIGPNTGANNDGRNALALSNLSTAKSMNGGTVTLTGAYANYVNDVGNQTNQ 594 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I+ + + GVN+ EE + L++ +Q Y ++K+I + QTLL Sbjct: 595 IQTSSKAQASLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTLLG 654 Query: 478 G 478 Sbjct: 655 I 655 >gi|218886714|ref|YP_002436035.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757668|gb|ACL08567.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 690 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 60/448 (13%), Positives = 135/448 (30%), Gaps = 17/448 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51 SL ++FN + +NA + N+ NAD Y R+ T Sbjct: 3 SLNSIFNIGSSALSNAQIGISVTSNNLANADVTGYSRQTVQYTTGPTVSSGGYTYGSGAE 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDS 110 V + ++SS + S + E + D + + S Sbjct: 63 VAEITRHFSYTVESQYLSYSSDASMWETITSALSSIETLFDDSDDEGYDLSTALDAFWTS 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L++ + + + + AE + N+++ ++ ++ + +IE ++ ++ L+ L Sbjct: 123 LDALAADPESEAARTELTGYAETLTALINSTSDSLEAVQTGLNTQIEQQVGDINDLLNTL 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N + AS + LD + L+ ++ + +S + ++ + VYT +G TL + Sbjct: 183 ADLNSQL----ASDPENATLLDSQATALRDLATYLDLSVVYNSDGQVTVYTGEGQTLVQG 238 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + T + S F + + + + + ++ L Sbjct: 239 GNTCTLAYEGPQATQSLTSASTFDGQIYFEGGSSHEIALEFVTSGSADGSASAATYKVSL 298 Query: 291 DEMARVLIGSFSEK--DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 D L +G + V ++ + + Sbjct: 299 DGGETWLTDDSGNALLFTASGADDKVTVAGVSIWFGSATDSGAAAGGTLAVGDDFTVMAK 358 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + + S K ++ S + TL A Sbjct: 359 SGVYWYQTTSGKVNVTPVDVTASDSNNRLSGGSLAGLLATRDQYVGSYLETLDAAAEELA 418 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESY 436 + S L S V + + + Sbjct: 419 WQVNYVHSQGAGLTSFSSVTAENSTGNA 446 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 46/411 (11%), Positives = 104/411 (25%), Gaps = 10/411 (2%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 G S K + + + + S ++ + ++ Sbjct: 282 SGSADGSASAATYKVSLDGGETWLTDDSGNALLFTASGADDKVTVAGVSIWFGSATDSGA 341 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + + + V + S L Sbjct: 342 AAGGTLAVGDDFTVMAKSGVYWYQTTSGKVNVT---PVDVTASDSNNRLSGGSLAGLLAT 398 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 RD + E + + S G L N+ T ++S+ + Sbjct: 399 RDQYVGSYLETLDA-AAEELAWQVNYVHSQGAGLTSFSSVTAENSTGNAATPLADSSLAY 457 Query: 254 IDGVVVSSNQGSAVPKGKI------KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 D + + S + + + ++ + + + Sbjct: 458 ADRLGSGTLSISVYDDDTGEVSTLSSIAIDPASDSLQDVADAINTTFSGQLTASINNGQL 517 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + A L L + + S L D V+ + Sbjct: 518 TIAAADDMSFQFAGDTSGLLAALGINTFFSGSDAGTITVSDSVLNDSNRVNAGVVDASGE 577 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + + + TL + + + S H Sbjct: 578 ALSGDSTCANDLAALADTKVTLNIGSGSVSKTLSKQLAALASTVGTDVDTSARKHTYYST 637 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + + GVN EEL L K +QSY+I+ +LI + M T+L Sbjct: 638 LADNADDMQQSISGVNSDEELLNLTKYQQSYSIAAQLIQVANSMFDTILSL 688 >gi|219682260|ref|YP_002468644.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621993|gb|ACL30149.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086655|gb|ADP66736.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087241|gb|ADP67321.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 543 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 53/548 (9%), Positives = 158/548 (28%), Gaps = 81/548 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54 + + N A + N + + I N + + + +N V V Sbjct: 1 MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57 Query: 55 QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ +Q ++ L++++ +N + ++ +E Sbjct: 58 IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 +++ + + +V ++++ + D + + + + E+ + Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174 Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ K ++QRD L+ +++ +IGI I ++N + ++G ++ + Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ S V+ +P + ALL+ R + +N++ Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333 ++ S + I + G I + + Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQPEVIASSSNRSSSKVSAKWLVISDAKN 353 Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 TI +N + G N N Sbjct: 354 TNYVIYFKDKNFIVTRLSDHSTIQPKVHVENNKTLFTFDGIECSIEGENADNDIYMIKPY 413 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLE-----------YARNSIGW-------------- 410 + + + ++ L + N + Sbjct: 414 SKTLEELELLINPNEPFAYSSTDDLNNPNRNNAIIINKFYNNVLVDHKETLDQAYQKFSQ 473 Query: 411 -LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + + + + ++++E + L ++ Y + K++ + Sbjct: 474 SISHKCNALEEEVPFKRNMIGILENKKMSISN-DMEQEYAELNYEQECYLANVKVLQTAE 532 Query: 470 KMLQTLLE 477 +L ++E Sbjct: 533 NILNEIIE 540 >gi|110641252|ref|YP_668982.1| flagellar hook protein FlgE [Escherichia coli 536] gi|191172366|ref|ZP_03033907.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300982621|ref|ZP_07176205.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|110342844|gb|ABG69081.1| flagellar hook protein FlgE [Escherichia coli 536] gi|190907250|gb|EDV66848.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300307086|gb|EFJ61606.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|324013350|gb|EGB82569.1| flagellar hook protein FlgE [Escherichia coli MS 60-1] Length = 401 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +F V++SN + + G I Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q + + + K Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|187734244|ref|YP_001880752.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] gi|187431236|gb|ACD10510.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] Length = 402 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIVNSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + Q + + + K Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|219682254|ref|YP_002468638.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621987|gb|ACL30143.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 408 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60 A + + I NI NA Y R + N V S + Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 N + +L + + F L + + + + N+ Sbjct: 65 NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L ++ N + L + + N I Sbjct: 119 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 152 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + R+ + + + + + E + N ++ Sbjct: 153 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 212 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 N +TV ESN + +S + G++ Sbjct: 213 NKWTVNVESNDSDDKETINNSFDLTFNDDGEL---------------------------- 244 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + K Q S+ S+ + + Sbjct: 245 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 290 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ ++I YC+ + ++ L + N ++ Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 349 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S V+L +EL +I +++Y + + DK++ TL+ Sbjct: 350 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 407 >gi|157160603|ref|YP_001457921.1| flagellar hook protein FlgE [Escherichia coli HS] gi|170020528|ref|YP_001725482.1| flagellar hook protein FlgE [Escherichia coli ATCC 8739] gi|312971213|ref|ZP_07785391.1| flagellar hook protein flgE [Escherichia coli 1827-70] gi|157066283|gb|ABV05538.1| flagellar hook protein FlgE [Escherichia coli HS] gi|169755456|gb|ACA78155.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] gi|310336415|gb|EFQ01601.1| flagellar hook protein flgE [Escherichia coli 1827-70] Length = 402 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLKFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|229096239|ref|ZP_04227212.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29] gi|228687199|gb|EEL41104.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29] Length = 407 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 108/478 (22%), Gaps = 71/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + NI NA Y ++ M + + Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + A S +S +M Y++ Sbjct: 46 YNNSIGAKSDGKYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGG---------------- 89 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ ++ R ++ Sbjct: 90 -KTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG------------------ISSDYYITNT 130 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +S I G I + TS GT + + Sbjct: 131 EGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGEKQITQD-- 188 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + V N G+ + + + Sbjct: 189 --------------LPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQG 234 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + ++ P D I+ + + ++ + Sbjct: 235 AGGNMTFDAVGNPNPKEQRANIPFDGGS---INLDLSHLTNHPTDKTLSVTDVDGRAAAT 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +A ++ Y D K+ VA L++ + N + L Sbjct: 292 VKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 350 ASGQNGAGKVRGGAQEGANVDLSIEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 >gi|311086083|gb|ADP66165.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 543 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 54/548 (9%), Positives = 158/548 (28%), Gaps = 81/548 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54 + + N A + N + + I N + + + +N V V Sbjct: 1 MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57 Query: 55 QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ +Q ++ L++++ +N + ++ +E Sbjct: 58 IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 +++ + + +V ++++ + D + + + + E+ + Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174 Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ K ++QRD L+ +++ +IGI I ++N + ++G ++ E Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIENN 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ S V+ +P + ALL+ R + +N++ Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333 ++ S + I + G I + + Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQPEVIASSSNRSSSKVSAKWLVISDAKN 353 Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 TI +N + G N N Sbjct: 354 TNYVIYFKDKNFIVTRLSDHSTIQPKVHVENNKTLFTFDGIECSIEGENADNDIYMIKPY 413 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLE-----------YARNSIGW-------------- 410 + + + ++ L + N + Sbjct: 414 SKTLEELELLINPNEPFAYSSTDDLNNPNRNNAIIINKFYNNVLVDHKETLDQAYQKFSQ 473 Query: 411 -LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + + + + ++++E + L ++ Y + K++ + Sbjct: 474 SISHKCNALEEEVPFKRNMIGILENKKMSISN-DMEQEYAELNYEQECYLANVKVLQTAE 532 Query: 470 KMLQTLLE 477 +L ++E Sbjct: 533 NILNEIIE 540 >gi|86151187|ref|ZP_01069402.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841534|gb|EAQ58781.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 545 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + + S NI N + + D + + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +V+ S + K N+ R Y Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIG-ISTIVRNNNDMVVYTSDGT---------- 225 IK + + + + + + + T DG Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240 Query: 226 -------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYNSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|332162901|ref|YP_004299478.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667131|gb|ADZ43775.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863351|emb|CBX73474.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 397 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 55/472 (11%), Positives = 116/472 (24%), Gaps = 78/472 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + ++Q +I NI N+ K + T Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMY------------------ 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S +G S K+ + + ++ + Sbjct: 44 ---AQSQPLGVGVSGTSQSIKKDGSIDRTGNAMDLAISGNGFFV----VKNSSGDEAYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ N S ++Q ADA ++ I + + Sbjct: 97 AGMFTTDKNGVLVNASGMKLQGYPADAAGNVQTGI--------------VSDLKISTVGL 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + S +T + +T ++++ R+ + Sbjct: 143 PAKATSKLGFMANLPASAQQPTNTTFSVGSKDSYNFMSTSTTYDSLGREHLLTQYFVKQA 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + D + L ++ S + K Sbjct: 203 GAGDWKV-----------------------HYAVDGAANSGAHDLKFDTSGVLTSGNSKT 239 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G GI T Q+ + N Sbjct: 240 ITGG--------------YTPVGADNYGIDITYTGTTQFHAEFLPAPSKSDGYTAGTKNG 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + + +A L +N W +RS + L Sbjct: 286 ERIENDGSVYATFSNGKQMLQGKLVLANFANPNGL--ATQNGTTWSVTSRSGAPLLGSPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +I V+L EL L+ +++Y + K+I D M+ L + Sbjct: 344 TGLLGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395 >gi|291536012|emb|CBL09124.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] Length = 551 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 44/553 (7%), Positives = 116/553 (20%), Gaps = 77/553 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ A + + I NI N + + + Sbjct: 1 MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103 V + S A + ++ + + Sbjct: 61 TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + ++ ++ + Sbjct: 121 AGSFYVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQA 179 Query: 164 RR----------------------------------------------FLSELTVVNDAI 177 + ++N Sbjct: 180 NVSGIIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDG 239 Query: 178 KFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + D D + L S++ + V + T E Sbjct: 240 TTFYDPETSKVDLSDIFGAKTTNATLGTYSQVQSGYYYDSAKDKFYVGSDATGTELEWDA 299 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 F++ N+ T T ++ + S G K I V + Sbjct: 300 TTSTFKEKNAPTNTHSLKQVYGISDAMVSKIGGGQAKAAIAKGTLTISGDVTDYAIDFST 359 Query: 293 MARVLI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 S ++ + + N + +D + + + Sbjct: 360 KDGTFTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTG 419 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 G K ++ + Y + + VA L + N Sbjct: 420 SIDDGVTGKGKKLGAMIGISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENC 479 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 N + + + + ++ V+L E + +I ++ + ++++I Sbjct: 480 YRTT-LNSGEFDGIGDEISADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITT 538 Query: 468 TDKMLQTLLEGVK 480 +D +L+ L+ + Sbjct: 539 SDTLLEELVNLKR 551 >gi|303248690|ref|ZP_07334944.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489946|gb|EFL49872.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 549 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 44/548 (8%), Positives = 118/548 (21%), Gaps = 71/548 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQR 56 L + S + SI N+ N + + T V Sbjct: 4 GLNTAMWSGVSGLMANSTKMTSIGNNLANVNTYGFKSARTDFVTLMSATIGTASGVDQVG 63 Query: 57 S------ENKNMFDKVLHAHSSAIGQQRLLQSFEAL-------KEMMSADDHYNNSPTHY 103 + L + F + + Sbjct: 64 RGVRVGSVVTDYSQGGLEITGTNTDMAINGNGFFMVKQKSSVGSNGKMLNTGNQTMYYTR 123 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDN-------AEEVVQNFNTSAREVQKIRADADKEI 156 Y + + + +D A + +++ I D+ Sbjct: 124 AGDFHFDENGYLSSTTGLAVQGWKVDQDKIDTATASGTTLSSTPITGQIRDIVLDSYSSP 183 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ--------KISEIIGIS 208 ++ + + A AS + D + + Sbjct: 184 AKATTSTTVITNLDSDSVSATTRNLASGGSFYAMSASWDGTKDPAMASTAYDYQTTVKVY 243 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----NQG 264 + + + VY + + + + + G ++ Sbjct: 244 DANGSPHTLTVYYDKIKNDNGKEYWEYSVTCDPAEDGRVDLLSNALAGTQMAGLLMVGTM 303 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE--------------------- 303 + G ++ + + + S Sbjct: 304 TFDSSGSMENMSAYTLKASNATAGAFNSNLWSVANISSSGYPEFTANFKSVSNGSFTDQG 363 Query: 304 -----------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + G + L + + V Y ++ S + Sbjct: 364 NATSISLNLGMRCTTGWATGTTLGDIDPTDMTTLGSFNPAQLKINSNVTTNYATSSSTVF 423 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + L ++ L + + + +A L + Sbjct: 424 TSQNGYTAGLLTSVSVDSDGVLTGTFSNGVSLQLWVLALANFTNLQGLNNAGNSLYT--A 481 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + IS + + V++ E+ +I ++ + ++K I D ML Sbjct: 482 TLESGEGTTNRPNSGSVGSISGNTLESSNVDMAAEMVSMIVTQRGFEGNSKTITTVDTML 541 Query: 473 QTLLEGVK 480 +++ + Sbjct: 542 SEIIQLKR 549 >gi|315123658|ref|YP_004065662.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017380|gb|ADT65473.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 544 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 55/543 (10%), Positives = 131/543 (24%), Gaps = 67/543 (12%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60 F + + S NI N + + D + + Sbjct: 2 NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61 Query: 61 --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +V+ S + K N+ R Y + Sbjct: 62 SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + T+ + + + + +++ F T AIK Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227 + + + + + + + T DG + Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241 Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261 + +FE + +SN + + G+ +S Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301 Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G L + V+P + + A I + N+ Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAIGNPTEGNM 361 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357 +++ + TI ++ + + + Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQDG 421 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + N++ ++ + + N + L N + Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGDA 481 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + V + V+L ELS LI +++++ S+K I +D+M+Q + Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 Query: 478 GVK 480 + Sbjct: 542 MKR 544 >gi|331652129|ref|ZP_08353148.1| flagellar hook protein FlgE [Escherichia coli M718] gi|331050407|gb|EGI22465.1| flagellar hook protein FlgE [Escherichia coli M718] Length = 402 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S A Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKIATT---------------------------------- 227 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 228 LEFNANGTLVDGAMANNIATGAINGADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|284925346|gb|ADC27698.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 544 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 55/543 (10%), Positives = 132/543 (24%), Gaps = 67/543 (12%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60 F + + S NI N + + D + + Sbjct: 2 NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61 Query: 61 --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +V+ S + K N+ R Y + Sbjct: 62 SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + T+ + + + + +++ F T AIK Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227 + + + + + + + T DG + Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241 Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261 + +FE + +SN + + G+ +S Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301 Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G L + V+P + + A I + N+ Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEGNM 361 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357 +++ + TI ++ + + + Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQDG 421 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + N++ ++ + + N + L+ N + Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDA 481 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + V + V+L ELS LI +++++ S+K I +D+M+Q + Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 Query: 478 GVK 480 + Sbjct: 542 MKR 544 >gi|296274397|ref|YP_003657028.1| hypothetical protein Arnit_2873 [Arcobacter nitrofigilis DSM 7299] gi|296098571|gb|ADG94521.1| protein of unknown function DUF1078 domain protein [Arcobacter nitrofigilis DSM 7299] Length = 913 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 12/222 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 +L N AQ+ A + + NI N + + Y +R T+ + VTV Sbjct: 1 MLDSLNIAQSGLKAAQTAVENTMNNIANVNTEGYKKRVVETSETDQLPGSKLGRGVTVGN 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ Q L + E + + + + K ++ES Sbjct: 61 TIRITSEYLYDNIIKQNTKESYQSELSTMLGNIEDVF-KETDTAGFSTDLDKYFQTMESI 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N + ++ + ++VV + N ++ A + + +++ + L ++ +N Sbjct: 120 RANPNNEVYKNQLKITGQKVVDDLNNLYDGIENQEAVFQQSLTEDVNQINSKLEQIQNIN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 IK H +++ LD+RD+L ++IS I+ + Sbjct: 180 LEIKK---QGHASNELLDKRDLLEKQISTYANITVSRDPDFY 218 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 54/437 (12%), Positives = 125/437 (28%), Gaps = 27/437 (6%) Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK-------LRDSLESYSKNLSEDI 122 ++A + +L E ++ S + ++ S E+ + N Sbjct: 478 EAAAALFGVNQEYTLSLTETSGSNTSNITSVLNVVNDGKDITQSFEVSTENTNSNPLVSA 537 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS------ELTVVNDA 176 + + ++ + A I + + + + Sbjct: 538 IPTVNPATGATQASGTTQVSS-IKSLSAVDGSSITHTVELKNTTTTAQVMKVSFSDDTGS 596 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T D + + I S NN V T + T + Sbjct: 597 YFDLTPKFIPDSITYDAQTGEITIPPGIKSFSFTTDTNNLAPVNTDQTYSFSITDNAAPS 656 Query: 237 ----FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +S + ++ + A I +L Q + ++ Sbjct: 657 GLTPVTMTSSIVINNKEGVVSNSIYKNEKRSDLANSAVSITSLDQPITLTSGKLKAIVEN 716 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + ++ A ++ + + D+ + + + Sbjct: 717 LTTDSGKNKFQEYKDALDAFAKTFVDMTSSYIKNDDGTYVNGEIATDSDIRVADDIDLFS 776 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF---------DPVAGINTNVTLLEY 403 + KF +V D + +++N F D V+ + Y Sbjct: 777 GSSVRTMKFNSDVVGSLKQKDYDYLASNQWSENISFLGYGQDKSNDKVSSDTETTSFSGY 836 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N + +++ S + V ++ SY V+ EE+ LIK + +Y+ + K Sbjct: 837 MQNLRINISRDKESSDSTVETQKAVSESMNNSYDLVTKVDNDEEMINLIKFQSAYSANAK 896 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D+ML+TLL + Sbjct: 897 MITTVDEMLKTLLGIKR 913 >gi|315637837|ref|ZP_07893027.1| flagellar hook protein [Campylobacter upsaliensis JV21] gi|315482078|gb|EFU72692.1| flagellar hook protein [Campylobacter upsaliensis JV21] Length = 545 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/545 (9%), Positives = 133/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + S NI N + + + + + + Sbjct: 1 MMGAFYNGISGVKTNSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K++ S + + K + + Sbjct: 61 YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162 + + + T+ + + + + + +++ Sbjct: 121 DSYGNFVLGTMNPAFQGITYSDRVAGLMGDYLNTGTPVNNGFTVNSNDKFTLGTTGSQGA 180 Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204 + +L N K + + K+ S+ Sbjct: 181 LQVPINMYLPPKVTQNVQWKGNLNTSTKTEVVTIDLNSGNFKLEKTADGKFKVSGSVSKN 240 Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 S + + +G + T+ +D+NF +++ + +D +S+ Sbjct: 241 EVFSAKENDRILLNFIDKNGVKQSFEATLDKDLNFVSKELDLKGLDADSVKLDSAQISTE 300 Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQL-------DEMARVLIGSFSEKD 305 G L + ++P + + A+ + Sbjct: 301 QQKANKDILEAPIYNADGSKSTLRLTLERILPQVGDTMVYKATAQIYNAKGEAVGEPTEG 360 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---------- 355 + N + + + T S S + Sbjct: 361 SMTFNQHGALLSNDIKSVNNPEGGAINIDLGTPYDPNIAGSGYSGIYIQAGKEKSVITRH 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ + +LI + + + L+ N + Sbjct: 421 DGIAEGFFDQYRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 EASFIMKDGEIVNTAKFKGGFLEQSNVDLSMELSNLIVTQRAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + K Sbjct: 541 INMKK 545 >gi|315057484|gb|ADT71813.1| Flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni S3] gi|315926889|gb|EFV06255.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926904|gb|EFV06270.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 544 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 55/543 (10%), Positives = 132/543 (24%), Gaps = 67/543 (12%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60 F + + S NI N + + D + + Sbjct: 2 NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61 Query: 61 --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +V+ S + K N+ R Y + Sbjct: 62 SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + T+ + + + + +++ F T AIK Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227 + + + + + + + T DG + Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241 Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261 + +FE + +SN + + G+ +S Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301 Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G L + V+P + + A I + N+ Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEGNM 361 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357 +++ + TI ++ + + + Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQDG 421 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + N++ ++ + + N + L+ N + Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDA 481 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + V + V+L ELS LI +++++ S+K I +D+M+Q + Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 Query: 478 GVK 480 + Sbjct: 542 MKR 544 >gi|239817165|ref|YP_002946075.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] gi|239803742|gb|ACS20809.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] Length = 404 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 101/474 (21%), Gaps = 73/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++ + + A+ I NI N+ + V Sbjct: 2 GFSQGISGLSAAAANLDVIGNNIANSGTVGFKSGAATFQDVYAGSRVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + + +S ++ L + S +++ Sbjct: 50 -------------LGVAVSGIVQNFTQGSVQTSSRPLDVAILNGDGFFRLSSPSGEVMYS 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + +A + +A+ Sbjct: 97 RNGQFTRDKDGFIVNAAG-----------------------------LRLTGYGVSATGG 127 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 V +S + N D T T N+ Sbjct: 128 LDGGTPGPLQVQTTAMSPKATTAINATFNLDARGTVPTKTPFSATDSATFNYSNALGPVF 187 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 S NP + V + + G + S D Sbjct: 188 DSLGNPHELGVFFVKTGANAWDVYGAADG----------------SALNGGAPISTMSFD 231 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + + + + + Q+ + Sbjct: 232 GNGNLLTPAGGKLTLPTMNFGNGSVALNATVDLSGTTQFGNVNEIKTLKQDGYTSGTLTS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + + + + L N W E S Sbjct: 292 FSINPDGTITGKFSNEQTTLMGQVVLTSFANPNGLEPMGENV--WGETLASGQPLTGTPG 349 Query: 426 QVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ V+L EL LI ++SY + + + D+++QTL+ Sbjct: 350 AGTKQGSLASGALEASNVDLTSELVNLIVAQRSYQANAQTVKTQDQVVQTLINI 403 >gi|209695762|ref|YP_002263692.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238] gi|208009715|emb|CAQ80019.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238] Length = 432 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 40/481 (8%), Positives = 113/481 (23%), Gaps = 62/481 (12%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQRS 57 A + + A + + N+ NA+ + + Sbjct: 3 YVALSGLSAAQKDLNTTSNNLANANTFGFKESRAEFGDVYSSSLFSNTKTTTGGGAQTTK 62 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + + Q F + + + E+Y Sbjct: 63 IAQQFHEGSSIYTNNPMDLRISGQGFFGVAKDRLQP---GTNELSRNGAFHLDKENYVTT 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 +++ L +D V ++ A ++ N I Sbjct: 120 SNDEFLLGYDVDPESGNVSSYQPKALKIPDQFG-----------------KPRATENVDI 162 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D ++ ++T + T Sbjct: 163 GMNLPASEVPKDPALFDMNDPDTFNKSTSVTTYDLLGQPYKMTTYY-------------- 208 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + T + N + + A Q+ S+V + Sbjct: 209 --VKDATQPNRWNVFYSSTDTEGEKAVNINAGDATNAAGQVGHSIVFNNDGTTQSVNAGQ 266 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + N D + R Sbjct: 267 PVTTTPLGANGLNMNGADTQQTLTMKFDNPTQFSAPFEMR--------------RFSEDG 312 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ +++ Y + + + + L + W S Sbjct: 313 ATTGYLSKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQ--NGGTQWSTTQASG 370 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +Q F I +++ +EL LI ++++ +++ + +++ Q +L+ Sbjct: 371 AAIWGEANQGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430 Query: 478 G 478 Sbjct: 431 I 431 >gi|224417868|ref|ZP_03655874.1| flagellar hook-associated protein FlgK [Helicobacter canadensis MIT 98-5491] gi|253827207|ref|ZP_04870092.1| flagellar hook-associated protein [Helicobacter canadensis MIT 98-5491] gi|313141411|ref|ZP_07803604.1| flagellar hook-protein FlgK [Helicobacter canadensis MIT 98-5491] gi|253510613|gb|EES89272.1| flagellar hook-associated protein [Helicobacter canadensis MIT 98-5491] gi|313130442|gb|EFR48059.1| flagellar hook-protein FlgK [Helicobacter canadensis MIT 98-5491] Length = 609 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 44/450 (9%), Positives = 115/450 (25%), Gaps = 21/450 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENV 50 LL+ N ++ NI NA+N+ Y R+ ++ + + Sbjct: 3 GLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYSRQVVRSSAQTPLQTSSNYVIGQGL 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +++ + S + + + ++ Sbjct: 63 NIISVERVHDEYTFSRYKKASMEKTYYEKSFEGLKEASSYY-PEVDGVGIYNDLQNYFNA 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S + + + A + N +++ + ++ + E+++ + + R ++ Sbjct: 122 WKDLSTKSGDSAQKIALAEQASTLANNISSTRDRLVNLQQSLNNELKVAVDEVNRLGEQI 181 Query: 171 TVVNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N I A+D D RD +I+ +IG + + Sbjct: 182 AQLNKKIAEYEYQELNQKANDLRDLRDQYEFEINNLIGCDVFKQGVKGSACVDENIADFD 241 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + I + + T K L + Sbjct: 242 DGYTLTIGGKAIVDGTSFHPLTLDNSQNPSGIYTIKYLRSDHKEYNLTNAINEGKVGAIL 301 Query: 289 QLDEMARVL-----IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 L VL +G N + + + I Sbjct: 302 DLIRTEDVLDCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLSAKSDTLNINSQDA 361 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + G + + + I++ + + N N+ + Sbjct: 362 LVTSDYNINSGSFKVVMYNKQGQEIGSRSVNIDNLTSMQDVLDQLNANIDDNGNMNASDD 421 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + ++ +DS + S+ I Sbjct: 422 FDD--RFVATFNNDSKTFTITSKNPSEEIY 449 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 135/492 (27%), Gaps = 34/492 (6%) Query: 11 QNICNNASQQF----ASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSENKNMF 63 ++ + +++ NI ++ R S N V V + + Sbjct: 128 KSGDSAQKIALAEQASTLANNIS--STRD---RLVNLQQSLNNELKVAVDEVNRLGEQIA 182 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 L+ + Q L Q L+++ + N+ + ++ + Sbjct: 183 --QLNKKIAEYEYQELNQKANDLRDLRDQYEFEINNLIG-CDVFKQGVKGSACVDENIAD 239 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + ++ + + I LR E + N + K + Sbjct: 240 FDDGYTLTIGGKAIVDGTSFHPLTLDNSQNPSGIYTIKYLRSDHKEYNLTNAINEGKVGA 299 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D D D + I+ + N ++ T++ + + +NS Sbjct: 300 ILDLIRTEDVLDCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLSAKSDTLNINSQ 359 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 S+ G S +G+ + + Q+ LD++ + + + Sbjct: 360 DALVTSDYNINSG---SFKVVMYNKQGQEIGSRSVNIDNLTSMQDVLDQLNANIDDNGNM 416 Query: 304 KDPIAGNSENVPGLFIADGIKDLD--NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + V + N + + R S Sbjct: 417 NASDDFDDRFVATFNNDSKTFTITSKNPSEEIYISIQDDGTNFAGALGINRFFAGNSADN 476 Query: 362 LWNVKNLAGYPDLINHY--------------CDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + LI Y F G T+ Y R Sbjct: 477 IELAEPYKSDATLIRAYREPVDGNFEVANLMQQLQYDKITFTSQDGTQQEETISGYFRYI 536 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 G + + + V+ I + Y V++ +EL LIK + Y+ + K++ Sbjct: 537 AGKVSSQTESTQITLETKEAVYISIKQEYKAISEVSVDDELINLIKYQSGYSANAKMVST 596 Query: 468 TDKMLQTLLEGV 479 D+ML TLL Sbjct: 597 IDEMLNTLLGIK 608 >gi|148269402|ref|YP_001243862.1| hypothetical protein Tpet_0257 [Thermotoga petrophila RKU-1] gi|147734946|gb|ABQ46286.1| protein of unknown function DUF1078 domain protein [Thermotoga petrophila RKU-1] Length = 623 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/388 (9%), Positives = 94/388 (24%), Gaps = 21/388 (5%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + G + V + Sbjct: 254 EEAGVYAESQVITATTDGSISGSTALPDGTYQAIVLDSSGNVVYNGTTTVSGGSFTINDS 313 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI---VR 212 +N L ++++ ++ + R + + Sbjct: 314 DITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSPRYT 373 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + T++ R N + + + D S G + Sbjct: 374 TAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGSGYV 433 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 L+ +S PI LD + G AG Sbjct: 434 AGLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGDGVV 477 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 I+ Q+ + + + + + ++I + + +A Sbjct: 478 TITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALA 537 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N L E + ++ S + + V+L EE + +I Sbjct: 538 VFNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFTKMI 595 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I D++L L+ + Sbjct: 596 VAQRGFQANARVITTADQILNELVNIKR 623 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/439 (9%), Positives = 99/439 (22%), Gaps = 19/439 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + NI N + + T ++ Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETML----AQTIKAGRSP- 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L ++ ++M+ N ++ D S S Sbjct: 56 ---QENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ +VQ A D E + + + +L + Sbjct: 113 TRAGAFTLDSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNKPIGDLVISAGMTMPAKK 172 Query: 183 SKHDAHDFLDQR----DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + + +++ GI+ VR + + + + Sbjct: 173 TSNVRFEGNLNSKLGPGSFVITLTDENGINHDVRVWFEKTQSDLGTDPFSSSQRYTMKID 232 Query: 239 KMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 N T + +F + GV S +A G I + D Sbjct: 233 IDNDGTADVDGYMVFNEFGRVEEAGVYAESQVITATTDGSISGSTALPDGTYQAIVLDSS 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + N ++ I N ++ ++ Sbjct: 293 GNVVYNGTTTVSGGSFTINDSDITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPR 352 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 F+ Y + Y N ++ + E +N+ W Sbjct: 353 FYESDNPTNFVQTDYTSPRYTTAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWR 412 Query: 412 EKNRSDSHDLHMKSQVVFN 430 S + Sbjct: 413 AYTDSGEPISLIDEDGGSG 431 >gi|218778868|ref|YP_002430186.1| hypothetical protein Dalk_1015 [Desulfatibacillum alkenivorans AK-01] gi|218760252|gb|ACL02718.1| Flagellar hook protein FlgE [Desulfatibacillum alkenivorans AK-01] Length = 693 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/379 (10%), Positives = 92/379 (24%), Gaps = 7/379 (1%) Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + S + G + + V AD +I Sbjct: 322 TNATATWSITNGLANYPSASVSGNANSFEVDLDGNGTTDISGTVAGGGMTADATGSFDIY 381 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 L++ + + + ++ ++ Y Sbjct: 382 PPNGMLAQTWDGTATPPLGDGAYEYQAIL-----KVYDSLGNTHDLTVYYDKGDNEGEYE 436 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 T + R + T ++ + V++ V ++ Sbjct: 437 FIVTVAPDEDERGGGTTGLPDIDTTIDNGAGLLARGVLTFTSDGEVSNVEMWEFNSDGTD 496 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + S N L + + Sbjct: 497 WSIDNADNWTALNPDNSSHISSDGYFYINPSFAEDLTSPMELNLGMAYDGTAWVQESLST 556 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 QY S + + + +++ + Y + K +A N L Sbjct: 557 TQYASAGNTTYQATTGYGVGDLDGISVSSDGVITGSYSNGQIKPLFRIALAKFNNVQGLQ 616 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + +N S + I+ + V+L E +I ++ Y + Sbjct: 617 KMGQNMFA--ATRNSGDAITNKPGTNGLGTITSNSLEQSNVDLANEFVKMITTQRGYQAN 674 Query: 462 NKLIMFTDKMLQTLLEGVK 480 +K+I TD++LQ ++ + Sbjct: 675 SKVITVTDQLLQEVINLKR 693 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 32/389 (8%), Positives = 76/389 (19%), Gaps = 22/389 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + + N I NI N + + + Sbjct: 1 MSLSSALFSGISGMNTLGNSMTVIGDNIANVSTVGFKSSRVTFQDVLAQTVSTQSGTGQL 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 L + SA + F +++ ++ N + R Sbjct: 61 GRGAAMGDITGIFSQGSLESTDSATDLAIGGEGFFVVRD----PENVNLEYFTRAGEFRF 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N S ++ + + I ++ + + Sbjct: 117 DEDGNFVNPSGYLVRGWTL-------DQKGNEEGSIGDIILNSFTSPPEATDKVTLITNL 169 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + D D + I + T V + + Sbjct: 170 DSDGEDNSLDADVKTASLGTVSLSGDAVNHPIYLTLNNQTAVNTDVSQFAVAWNSGAGAW 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + + I +D + G Sbjct: 230 SITHGATEYPAAVISGDAAGFTIDLDNDGTADITGRTGGSLTADGAGSFDIEAPGALGVV 289 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 V G ++ + G++ + +N Sbjct: 290 TQGGDAVNNNIMVTVSDSEAILAMASGFEVSWTNATATWSITNGLANYPSASVSGNANSF 349 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + G+ + V D + Sbjct: 350 EVDLDGNGTTDISGTVAGGGMTADATGSF 378 >gi|146311246|ref|YP_001176320.1| flagellar hook protein FlgE [Enterobacter sp. 638] gi|145318122|gb|ABP60269.1| flagellar basal body FlaE domain protein [Enterobacter sp. 638] Length = 404 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 110/476 (23%), Gaps = 77/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + + ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKIGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F + + + + + N+ Sbjct: 62 NDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNIVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q A K + + A Sbjct: 116 LTGYPVAGTPPTIQTGANPQAITIPNTLMAAKSTTTASQQIN------------LNSTDA 163 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + D D + + N ++M ++ T + S Sbjct: 164 APSKAFNVADTSDPDSYNKKGTVTVYDSQGNAHNMNLFYVKDTAANSWKVYSQDASVPGS 223 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + GV+ + + + +P ++ + Sbjct: 224 AATLATTLTFSASGVLTA------------GGQVNVTTGTIPGATPATFALSFANSMQQN 271 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + K Sbjct: 272 T------------------------------------------GANNIVATNQNGYKPGD 289 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + N+ +A N L N W S L Sbjct: 290 LVSYQINDNGTVVGNYSNEQNQVLGQIVLANFANNEGLKSEGDNV--WTATQSSGVALLG 347 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 348 TAGTGNFGSLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 403 >gi|187925754|ref|YP_001897396.1| flagellar hook-associated protein FlgK [Burkholderia phytofirmans PsJN] gi|187716948|gb|ACD18172.1| flagellar hook-associated protein FlgK [Burkholderia phytofirmans PsJN] Length = 657 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 52/411 (12%), Positives = 121/411 (29%), Gaps = 18/411 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + S V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L+ S+ + + + I+ L+ Sbjct: 61 TTVTRQYSQYLTTELNNAQSSGSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N S +T + A+ +V N + ++ +R + ++ +S + + ++ Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYTQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + +DQRD+ + +S++IG++ + +N V+ S+G L + Sbjct: 179 LNGQITQASTQGQPPNQLMDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSGN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + + S + G + LL R + + Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAAAPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL +A + ++ + G + Q Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFANPA 357 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + + + + S N + G Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGSVVGSATNLSQPINGLNFSTTGTMNAG 408 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/361 (9%), Positives = 91/361 (25%), Gaps = 3/361 (0%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + V N + + A + + +N + Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAN 355 Query: 180 --KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + + L + + S + + S T+ + Sbjct: 356 PAQPTTGDYTLAYNGTTYTLTDNSTGSVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + +A + Q + N ++ Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLGAAASSNTGTGTITQGTVTAGYTMPNSTTTLSYDG 475 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 G P T+ +N + + S Sbjct: 476 TGLSGFPVGSTVTVAGSPATTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISG 535 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + N ++ + + A VTL N + + + Sbjct: 536 APA-AGDKFTIGPNTGATNDGRNALALSNLSTAKALAGGTVTLTGAYANYVNNIGNQTNQ 594 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I+ + + GVN+ EE + L++ +Q Y ++K+I + QT+L Sbjct: 595 IQTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILG 654 Query: 478 G 478 Sbjct: 655 I 655 >gi|329901230|ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] gi|327549162|gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] Length = 407 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/473 (9%), Positives = 106/473 (22%), Gaps = 68/473 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ N+ N+ + Sbjct: 2 GFQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADV------------------- 42 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 +L ++ S + + S N + + Sbjct: 43 ----------------YASSLTGGGASQVGIGTSVATVAQQFTQGNVTASNNPLDLAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + Q ++ + + LT + A+ Sbjct: 87 GGFFRLSTGGAITYSRNGQFQ---------LDKNGGIVNSNGAHLTGFGVSATGVLATGT 137 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ ++ D+ + SE + + + + T+ T + R + +S Sbjct: 138 PSNLVINTADLAPKTTSE-VKLLVNLDSRETTPKTTTFSATDPTSYNRSTSVSVFDSLGN 196 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + F+ +S + S Sbjct: 197 SHVLQSYFVRTSPTASTWDVYGTADG---------------------ASLTPALIGSLSF 235 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + + Q+ S + Sbjct: 236 NTDGGLTTAQPFSATLPTTVTPGASALTLKFDLTGTTQFGSTFGLNTQSQDGYTSGKLSG 295 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + Y + + ++ L N W E S + + Sbjct: 296 FATGADGVITGRYTNGKSATLGQVVLSNFTNPNGLQNLGNNV--WSETAASGGPLVGTPN 353 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L EL +I ++ Y + + I D++LQTL+ Sbjct: 354 SGNLGVLQSSAVEDSNVDLTAELVNMITAQRFYQANAQTIKTQDQVLQTLVNL 406 >gi|188534170|ref|YP_001907967.1| flagellar hook protein FlgE [Erwinia tasmaniensis Et1/99] gi|188029212|emb|CAO97084.1| Flagellar biosynthesis, hook protein [Erwinia tasmaniensis Et1/99] Length = 402 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 50/476 (10%), Positives = 100/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + + E N+ Sbjct: 62 GDGTTTTTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDAERNIVNMQGLK 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ N Sbjct: 116 LTGYPATGTPPTVQ----------------------------------AGANPVALSVPT 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A ++ T + N+ T F+++ Sbjct: 142 TAMSARATTTAAMTANLNSTDSSKDLTKLNINDSTTYNAKSAMTTFDSLGNAHTVNLYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +D ++ + + L + V L Sbjct: 202 KTADNNWTVHPVDSSTGTAGTNTNLVFDANGQLTTPANGQVSYSMGAL------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + Q +F K Sbjct: 250 ----------------------NGSTAQPGMTISLAGSLQQNNGKSTFGNPTQDGYKPGE 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ Y + + ++ L N W + S Sbjct: 288 LTSYQINDDGTLVGSYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSATSSSGQALTG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 TAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|330501137|ref|YP_004378006.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] gi|328915423|gb|AEB56254.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] Length = 395 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 119/474 (25%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + ++Q +I NI NA + T + + + + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEFGSIYADSQAMGV----EVLATT 57 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ N + + Sbjct: 58 QSISQGGSLVTTGRSLDLAISGGGFFVTRGGNG---------------------DVSYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + A++ N + + +Q DA + + + A Sbjct: 97 AGVFGADKDNNIVNAAGQTLQGYPVDAAG---------NLQVGAMGDLQLQTANLPARAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D F+ D ++ + + + ++ T +F++ ++ + T Sbjct: 148 DTLAFVMNLDS-----NQTVPATAPFDPADVNTYNSTYTTKIFDSQGKEHTLTQYFIKTG 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + G + Sbjct: 203 DNAWDVRYYQGNTAVGGP---------------------------------------QAL 223 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N + L I+ + QY S+ + S Sbjct: 224 TFGTNGTLTAPAGPVNVGFALPGVDPMAIAIDYSNSSQYGSDFVVTTNRASGYAAGEQTG 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + +Y + +A L + + W+E S + + + Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKDV--SGTAWVETADSGAALIGVPG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F + V+L ++L L++ +++Y + K++ ++ Q L + Sbjct: 342 VGPFGALVAGSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKELTQVLFGAI 395 >gi|153948570|ref|YP_001399634.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|152960065|gb|ABS47526.1| flagellar hook protein flgE [Yersinia pseudotuberculosis IP 31758] Length = 402 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 56/477 (11%), Positives = 112/477 (23%), Gaps = 83/477 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A N ++Q +I NI N+ K + T P VTV Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFASMYAQSQPLGVTVSGVSQ--N 59 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D + F ++E + R ++ Y N Sbjct: 60 IGKDGQKDKTGMGLDLAISGGGFFVVREN------SGDKAYTRAGMFRSDVDGYLVNGQG 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L D+A + + +L+I+N T ++ + Sbjct: 114 MKLQGYPADDAGNIQAGIIS----------------DLKINNAGVPAKASTNLDFMANLE 157 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + D + + + + + Y T P Sbjct: 158 AGATVPSVTTFNAGDQNSYNFTTTSTVYDSLGREHAVAHYFIKSATTTSAAPNQWTVRHS 217 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 TV + + + SA G + + Sbjct: 218 IDGTVATAHHTLQFTNTGALIPSSSAKLTGTFNPAGAADYDIDIDYTGTTQLNQGFTTTR 277 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 +G Sbjct: 278 NKSDGYTSGVKNGER--------------------------------------------- 292 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + + +A + L+ +N W E N+S + Sbjct: 293 -------IESDGSVYATFSNGERMLQGKVVLANFASPSGLVT--QNGTSWSESNKSGAAL 343 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 L + + V++ EL L+ +++Y S K+I D M+ L + Sbjct: 344 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 400 >gi|229029434|ref|ZP_04185517.1| Flagellar hook protein flgE [Bacillus cereus AH1271] gi|228731893|gb|EEL82792.1| Flagellar hook protein flgE [Bacillus cereus AH1271] Length = 409 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/478 (8%), Positives = 106/478 (22%), Gaps = 69/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + NI NA Y ++ M + + Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + +S +M Y++ Sbjct: 46 YNNSIGSKGDNKYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGG---------------- 89 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +++ ++ R ++ Sbjct: 90 -KTQAAMEGNGFFVVGDSAGGNMEFTRKGTFG------------------ISSNYYITNT 130 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +S I G I + T+ GT + + Sbjct: 131 EGQYVFAYPANAATGEVDLSGIPGPLQIPMGTAIGGIQTTKGTIKGNIPVNESKITQDLP 190 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + +++ Q + D + Sbjct: 191 FYDDAGNTWTMRVEFTKTNDHEYTY-----------------KVQRRNDSAKDPKFEEVT 233 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G I+ + ++ + Sbjct: 234 GAGSTGTLKFDKVGNPDPVQQGAAIPFNGGTINLDFSQLTNHPTDKTLSVTDVDGRAAAT 293 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +A ++ Y D K+ VA L++ + N + L Sbjct: 294 VKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALG 351 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 352 ASGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 409 >gi|227820875|ref|YP_002824845.1| flagellar hook protein FlgE [Sinorhizobium fredii NGR234] gi|227339874|gb|ACP24092.1| putative flagellar hook protein FlgE [Sinorhizobium fredii NGR234] Length = 404 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/480 (7%), Positives = 112/480 (23%), Gaps = 76/480 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N + + +++ NI N+ Y R T + Sbjct: 1 MSLYGTMRTGVSGMNAQANRLSTVAENIANSSTTGYKRASTEFSSM-------------- 46 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 SS + + ++ D + Sbjct: 47 -------ILPSSNGSYNSGGVETSVRYSISDQGSTTYTTSASDLAIDGDGFFIVQGANGQ 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + L + ++ N + + +A + + ++ + Sbjct: 100 EYLTRAGAFVQDDSGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTEVNLASDGLTAAG 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + ++ VY + G T + Sbjct: 160 STAGAMGANLPSGAANGDVSTTSLV-------------VYDTQGNTRILDFNYTKVADNQ 206 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + ++ + + + Sbjct: 207 WELDIVDRTSATSLGTATLDFDADG----------------------------------- 231 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + I+ Q ++ + + Sbjct: 232 -----VLTTSPATLTLDGTLISPITGTGAELNNITIDFTETTQLGTSFTPDGGSIDGNAP 286 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + Y + + +A + + L+ + N S Sbjct: 287 SKVSGYQIDTDGVVYIKYANGELEPRYRIALASVQSPDKLVPESGNVYSQ--GVDSGVIV 344 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I + V++ +EL+ +I+ +++Y ++K+ ++L+ L+ + Sbjct: 345 TGFAGSGSFGEILSGALESSNVDIADELTSMIESQRNYTANSKVFQTGSELLEVLVNLKR 404 >gi|163803169|ref|ZP_02197052.1| flagellar hook protein [Vibrio sp. AND4] gi|159173069|gb|EDP57902.1| flagellar hook protein [Vibrio sp. AND4] Length = 399 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/474 (9%), Positives = 107/474 (22%), Gaps = 76/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D+ ++ + L Sbjct: 59 NFDKNGSVTGTGRAMDLAINGSGFFVTKDNMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ + +I++ S+L ++ + Sbjct: 119 YSV--------------DNNANLQTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D D S + L + F K + Sbjct: 165 QTVYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ G + Sbjct: 209 QVNVEVNGAPTTPATAQTVQFNTDGTLA-------------------------------- 236 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + I ++ + Q+ ++ + + Sbjct: 237 ---------SPTGSFNIAFPAAGANAMSIDISLNGSTQFGASFGVSTNNPNGYTSGELAG 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L + + W + S + + + Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTSWTQSFSSGAPIMGVPG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ V+L EL L+ +++Y + K I DK+ Q L V Sbjct: 346 TGTLGNLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|90422393|ref|YP_530763.1| flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] gi|90104407|gb|ABD86444.1| Flagellar hook-associated protein [Rhodopseudomonas palustris BisB18] Length = 588 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 79/430 (18%), Positives = 150/430 (34%), Gaps = 22/430 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + A + N Q + NI NAD Y + + + Sbjct: 1 MSLDIARSIAVSSLMNTQVQISVTSSNISNADTTGYTVKTANQAAVVNAGTGAGTVITGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA----DDHYNNSPTHYISKLRDSL 111 S + K L SA+G + + + DD S + I+ L ++ Sbjct: 61 TSTVDKLLMKSLIQADSALGAADTNNDYLDQLQALYGSTADDDSSGTSLANTIAALETAI 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S S S L V+ +++ ++ +Q +R++AD+EI + ++ L + Sbjct: 121 TSLSATSSSAALQANVVSALDDLATQLRDTSSGIQDLRSNADQEIATAVDDVNEQLQTIA 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +N AIK A+ D D+R+ +Q I+ + IS + + DM VYT+ G L +T Sbjct: 181 NLNAAIKLAAAAGQSTADLEDKRNTAVQDIATKMNISYFISSTGDMQVYTASGQALVDTR 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +++F ++ T +S + V + + + G+I AL+ +RDS +P Q Sbjct: 241 AHELSFTASSTVTASSSYSATSSSTLSGVTVNGVDVTAQISSGEIGALIALRDSELPAAQ 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QLD++A L S + + L + R Sbjct: 301 AQLDQLATQLADSLNTVSNTGTSLPPPA---------TLTGTTAVAADTALDATGTVRIA 351 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + G + + + D I+++ + Sbjct: 352 VADQSGTLVSYADLDLSSYATVGDLVSAINGISGLSASIDSDGHLTISSSSSNGVAVNEM 411 Query: 408 IGWLEKNRSD 417 + + Sbjct: 412 TSSVGSDGKG 421 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 95/294 (32%), Gaps = 6/294 (2%) Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 Q D L ++++ + + + + T + D + Sbjct: 297 PAAQAQLDQLATQLADSLNTVSNTGTSLPPPATLTGTTAVAADTALDATGTVRIAV-ADQ 355 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + + +SS I + + S+ + + + + Sbjct: 356 SGTLVSYADLDLSSYATVGDLVSAINGISGLSASIDSDGHLTISSSSSNGVAVNEMTSSV 415 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + + + + + I N + S + Sbjct: 416 GSDGKGLSDWLGLNDLVTATGASDFAVRSDILANSGLL----QVATLDSSDTLTTGSQVL 471 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 AG ++N + + FD V G+ + + +YA + + S + D + Q Sbjct: 472 SAGSATVVNALYSALTDDITFDAVGGLGSSTGSFADYASTIVSAVAAKASTAEDTYTAKQ 531 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + ++ GVNL EE + L ++ Y+ +++LI ++M +LL+ V+ Sbjct: 532 TAQSTFASALASQSGVNLDEETARLSTLQNQYSAASQLIQAINEMFSSLLQAVQ 585 >gi|119503644|ref|ZP_01625727.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] gi|119460706|gb|EAW41798.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] Length = 410 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/473 (11%), Positives = 112/473 (23%), Gaps = 65/473 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + A I NI NA + + Sbjct: 2 AFSTAISGIKAAQANLDVISNNIANASTVGFKASRAQFAEIYASSVSGG----------- 50 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + F + D + IS + S + G Sbjct: 51 --SNAGQGVELTEIRAEFSQ-----GSLDFTGSGLDLAISGNGFFIVSNAGASEYTRAGS 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D + S +Q + + D I Sbjct: 104 FQVDRDGFLTN---ESGNRLQGYQGNTDGVITG--------------------------- 133 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ ++ +T+V V + E VP F + + Sbjct: 134 --------------ELGDLFIDTTLVDPKVTSKVTITSNLDSREAVPTTATFAPTDPTSY 179 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 S ++ D + S K ++ SV + + Sbjct: 180 NSTTSTTIYDSLGNSHVLQLYYVKQSAANTWKVHTSVDGGTPPAATTITFD-SDGTLATN 238 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 S P + S I Q S+ S Sbjct: 239 SANAISITTPANELLSASGVATGAAALAYSVDILATTQLGSDFSVNSAIQDGYGAGQLIS 298 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 Y + ++ +A N L + ++E S ++ + Sbjct: 299 FEFDDSGTAFARYTNGQSRAIGQVALASFRNNNGLQPVGGS--NYVESFGSGGPNIGVPG 356 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I S V++ +EL LI ++++ + ++I D+ Q ++ Sbjct: 357 NSGRGNIQSSAVEQANVDITQELVNLIVAQRNFQANAQVISTEDQATQAVINL 409 >gi|283955493|ref|ZP_06372988.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] gi|283792954|gb|EFC31728.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] Length = 545 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 136/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVTQR 56 ++ F + S NI N + + D TI+ ++ Sbjct: 1 MMNSFYNGISGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + V+ S + K N+ + Y Sbjct: 61 YGSGSASSNVVFEQGSLVASDSEFDVALQGKGFFGVLGADGNAYYTRNGSFKRDANGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T+ + + + + +++ F T A Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTLVNNGFTVNSNNSFGIGTTASQGA 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227 IK + + + + + + T DG + Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPGKFNITKTEDGKYVVSGSVSKE 240 Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261 + +FE + +SN + + G+ +S Sbjct: 241 DVFSAKVGDRIILNFTDDNGVKKSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVMLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + +++ ++ + + N + L N + Sbjct: 421 DGVAEGFFKQYDISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKNGQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|303248233|ref|ZP_07334496.1| flagellar hook-associated protein FlgK [Desulfovibrio fructosovorans JJ] gi|302490371|gb|EFL50282.1| flagellar hook-associated protein FlgK [Desulfovibrio fructosovorans JJ] Length = 696 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/435 (9%), Positives = 112/435 (25%), Gaps = 14/435 (3%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSEN 59 ++ + NI N D + Y ++ + V Sbjct: 11 GRSGLTASQAALQVTGNNIANVDTEGYSKQSVVLVDGNYITSSPGQLGSGVVAQEVVRSY 70 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + S + + L + + ++ N +S + + N + Sbjct: 71 DALTQSQYLSQISVRDRWKALYNGLTSIQSYF-NESNTNGANAALSTVFGDWGDLTANTA 129 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + +T++++ ++ + + A ++ +A D I +++ L + ++ +N I Sbjct: 130 DTATRQTMLEDTNTLLSIYRSMASSLEDQKAALDTAITDDVATLNQLAKDVADINRQINQ 189 Query: 180 KTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + D RD ++ I+ ++ ++ + D VYT G T+ + Sbjct: 190 HQIDGKSIPNGLYDLRDSKVENIASMVDVNVVDNGKGDYTVYTKSGQTIVDGTEAYSFDY 249 Query: 239 KMNSYTVTSESNPIFIDGVVV--SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 K + + + S ++ + Sbjct: 250 KQGQTVRQLSAASLAANSDAQCYYEGTDSHEYTVRVVNTGGVGTGATFKVSLDGGHSWLT 309 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + V + +++ S+ + L + Sbjct: 310 DANGNTAIYQAEDTTGKVKVGDLDIWFGQMNDSGTAPTSDLNAGDTFTLVPKKALYWHTT 369 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + A D + + L+ NS+ W Sbjct: 370 AGTEENVTPQLHADGTDDERRLTGGALAGALLLRDENLAGYQDSLDATVNSMVWEINRIH 429 Query: 417 DSHDLHMKSQVVFNH 431 V Sbjct: 430 SQGAGLTNFSSVQGT 444 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 8/279 (2%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T+ ++ S G L + ++S + G ++S Sbjct: 417 TVNSMVWEINRIHSQGAGLTNFSSVQGTYGVVDSNAALGSNQAGLTYGNRLASGAAMIYV 476 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 L + L++ + +FS + + + + + Sbjct: 477 YDANGNLASSDGIWMDPTATTLNDFVTSINTAFSGTLNASVVNGRLAISAASGYSFQFGD 536 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--------WNVKNLAGYPDLINHYCD 380 ++ S S + V+ + +G Sbjct: 537 DSSGILAALGVNTLLTGSTASDVAINSVVTGDTNRVNVGHVGTDGLTASGDNTTAKSMTG 596 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +K F N T+ Y +G + + + ++ + + I + + Sbjct: 597 LADKKVDFFVTGKATANQTISGYYGAMVGQVGADTASANYQATYQTALASQIKDQKLSIS 656 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GV+L EEL+ LIK + +Y + KLI D + QT+L Sbjct: 657 GVSLDEELTNLIKFQHAYQAAAKLISTADSLFQTVLGLK 695 >gi|295110886|emb|CBL27636.1| Flagellar hook-associated protein [Synergistetes bacterium SGP1] Length = 442 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 49/437 (11%), Positives = 124/437 (28%), Gaps = 17/437 (3%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + T T D L + S G +++ D ++ T Sbjct: 14 TAVSGPTTGTATQFYVESKDHRLISISDVEGSLAKRMGIVNKASVVTIDVEETDTLTTIR 73 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +K+ + ++ + + + + ++ + + + Sbjct: 74 NKINEKYQAELGITAPEEWVHASLKQDSDQSWYLTIASDVPGEAQRITLMGGADGNDQVL 133 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 R L + + T + V G+ + +N Sbjct: 134 RRLGLMRLEQIGTVSATDKTPVYREVAAISTVAEDASFTFNGVRYLSSDNRFKE------ 187 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDS 281 +P ++ + ++ + + V G IKAL + RD Sbjct: 188 ---ARRIPASGGSSDYSASKLAQVEEGMWFNLKHAGSTAITVRHHVRSGTIKALEEARDG 244 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++P Q QL+++ L+ + K L + + + VN Sbjct: 245 IIPNLQGQLNDLTWGLVNHVNAYQYSGYGIGGDITTTGVAFFKPLGTRT--RAASNLSVN 302 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 ++ + + G+ + ++G ++ + +T+ Sbjct: 303 DAVVADNALI---GAAMGRKNAAGVAVSGVSGGSGDGSNALRMANLASARVLKGGTMTIR 359 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + + + + + I GVNL EEL +I + + + Sbjct: 360 GVYDAMLSQVGSKAAHAQLMSTAQDSLAEQIGLQREAVSGVNLDEELMDMITLNRCFGAM 419 Query: 462 NKLIMFTDKMLQTLLEG 478 ++ + D+ML ++ G Sbjct: 420 SRYVTTVDEMLNAIING 436 >gi|330818578|ref|YP_004362283.1| flagellar hook-associated protein FlgK [Burkholderia gladioli BSR3] gi|327370971|gb|AEA62327.1| flagellar hook-associated protein FlgK [Burkholderia gladioli BSR3] Length = 661 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 49/404 (12%), Positives = 114/404 (28%), Gaps = 16/404 (3%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 + N + N A + +NI N Y + SP VT V Sbjct: 3 SNLLNLGLSGINAALWGINTTGQNISNQATPGYSVERPVFAESDGQYTPNGFSPSGVTTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L++ ++ + A + IS L++ Sbjct: 63 TVQRQFSQYLSDQLNSANTTASALSSYSALVATLNNYVGNPSA--GIGAAISSYFSGLQT 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N +T + + + N + + +R +++++ ++++ +++ + Sbjct: 121 VANNAGNQSTQQTALAAGQTLASQINAAGAQFDALRTQVNQQLQSSVTSVNALTAQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + + LDQRD + +S+ +G+ + N + V +G L Sbjct: 181 NQQISAAGSQGQPPNQLLDQRDQAVASLSQYVGVQVT-QVNGNYNVSIGNGQPLVVGNNS 239 Query: 234 DINFEKMNSYTVTS---ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ + + S+V G I LQ R + + QL Sbjct: 240 YQLSTAPSAADPSELSLTVQGTVNGAATTTVVPDSSVTGGSIGGALQFRTQTLDPAEAQL 299 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 +A + ++ + + G + + + Sbjct: 300 GAIAVSFAAQTNAQNALGVDLNGKVGGNLFNLPTPTTITNANNTGNATLTAAFDNAQQPP 359 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 D + + N + G Sbjct: 360 TSDFTLSYDGTTYTLTNKTTGTVAGTANSLPATLGGLKLSATGT 403 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 50/449 (11%), Positives = 104/449 (23%), Gaps = 6/449 (1%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD- 94 YV NV++ + L SA L + + + Sbjct: 211 YVGVQVTQVNGNYNVSIGNGQPLVVGNNSYQLSTAPSAADPSELSLTVQGTVNGAATTTV 270 Query: 95 -HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 ++ I + V A+ QN + + Sbjct: 271 VPDSSVTGGSIGGALQFRTQTLDPAEAQLGAIAVSFAAQTNAQNALGVDLNGKVGGNLFN 330 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I+N + + + + L K + + + Sbjct: 331 LPTPTTITNANNTGNATLTAAFDNAQQPPTSDFTLSYDGTTYTLTNKTTGTVAGTANSLP 390 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + S T+ I + + S G V + + + Sbjct: 391 ATLGGLKLSATGTMQPGDSFTIEPTRGALNSFGVVSGATIASGAPVFAQKTATNTGTGAI 450 Query: 274 ALLQIRDS----VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + I + A+ D Sbjct: 451 TAGSVTTGYQIPSSTTTLTYNAASKSLTGFQVGTTVTIGTTPPTTVAITDANTQVPYDAS 510 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 ++ T V P +N + + G N ++ + + Sbjct: 511 KGATLTITSTVQPPTDTNLMNNVTVSVSGAPADGDTFTIQGGSSGTNDGRNAQLLSALAT 570 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 A + TL + + + + V + I+ + GVN EE Sbjct: 571 SKAFDGGSTTLSAAYSSYVNNVGNAAASLSARSSVQAGVVSQITTQQQSVSGVNQNEEAV 630 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L++ +Q Y + K+I + TLL Sbjct: 631 NLMQYQQMYQANAKVIQTASTLFSTLLGI 659 >gi|192289145|ref|YP_001989750.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris TIE-1] gi|192282894|gb|ACE99274.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris TIE-1] Length = 587 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 86/424 (20%), Positives = 162/424 (38%), Gaps = 17/424 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL + A + Q + NI NAD Y ++ S VTV Sbjct: 1 MSLNIARSIAFSGLAATQVQISVTSANISNADTTGYTKKTAGQASSVTGGVGTGVTVTGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109 S + K L A +S +G S+ + S + ++ L Sbjct: 61 TSSVDKLLLKSLIAANSDLGAADTTNSYLTSLQQFYGSSTSATSTSTGTSLANTLASLES 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + + L V+D + V ++ +QK+R++AD++I + ++ + + Sbjct: 121 ALSSLASTPTSSALQSNVVDALDSVTSQLRETSSGIQKLRSNADQDIASAVGSVNDDVQK 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N AIK A+ D D+R+ LQ +S + +S +N D+ VYT+ G L + Sbjct: 181 IADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQMNVSYYTASNGDLQVYTATGQALVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +++ S + + G++++ + S + GKI AL+ +RD +P Q+ Sbjct: 241 STAHPLSYTTTASVSAVTSYGSGGFSGIMLNGVDVTSQITSGKIGALVALRDQTLPAAQS 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QLDE+A+ L S + L +S T V + Sbjct: 301 QLDELAQQLAVSLNAVSNGQTTLPAPASL-----TGTATLSSSDALSATGSVRLAVTDSS 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L G + +V +L + ++ S + + A + + +S+ Sbjct: 356 GRLVSYGDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGVSIGELSSSV 415 Query: 409 GWLE 412 G Sbjct: 416 GSAG 419 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 43/418 (10%), Positives = 112/418 (26%), Gaps = 9/418 (2%) Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 S+ +Q L + S K +L+ S Sbjct: 168 ASAVGSVNDDVQKIADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQ-MNVSYYTASNG 226 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + +++ ++N + Sbjct: 227 DLQVYTATGQALVDSTAHPLSYTTTASVSAVTSYGSGGFSGIMLNGVDVTSQITSGKIGA 286 Query: 190 FLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + RD L ++++ + +S +N + T T+ S Sbjct: 287 LVALRDQTLPAAQSQLDELAQQLAVSLNAVSNGQTTLPAPASLTGTATLSSSDALSATGS 346 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + + A+ + I + ++A + Sbjct: 347 VRLAVTDSSGRLVSYGDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGV 406 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + + F + + + + L + + Sbjct: 407 SIGELSSSVGSAGEGFSDYFGLNDLVTATGASDIAVRSDILSGKSSLSLATLSAAAVLTT 466 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDL 421 + + N D+ + F V G+ + ++A + + S + Sbjct: 467 GSSVLSSDGASAANALYDALTGSTSFKAVGGLAAVTGSFADFASTIVSSVAGKASLASST 526 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + S S+ GVNL EE + L +++ Y +++LI + M L+ V Sbjct: 527 YSVKEAAQSTYANSLSSQSGVNLDEESARLSELQNKYTAASQLIQAINAMFTALVSAV 584 >gi|187926954|ref|YP_001893299.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|241665283|ref|YP_002983642.1| flagellar hook protein FlgE [Ralstonia pickettii 12D] gi|187728708|gb|ACD29872.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|240867310|gb|ACS64970.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 402 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 56/473 (11%), Positives = 118/473 (24%), Gaps = 72/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + +GQ + + + N + + Sbjct: 47 LVGASDNQVGQGVEVTRVSQ--------------------SFTQGNVTITGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + +R Q ++ ++ T N ++ Sbjct: 87 TGFYRMVDTASGQVSYSRNGQFQ------------TDKNGYIISATGQNLTGYGVDSTGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D T P F NS T Sbjct: 135 VNTAVLTNLQIPVNDLAPLATTNTAFGINLDAA----------ATAPTTTPFSPTNSATF 184 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + DG + + + + ++ + Sbjct: 185 NHSVSEQVYDGTGTAHMLTNYYVRTATGW-------------DVYSQVDGNNPTGGNPVT 231 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + NS + + T N + Sbjct: 232 TLTFNSNGQLTSTPSKIAVSFAGMSIASMDFTGTTQYGGGYNDTAPGVTQDGYATGRLAS 291 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + +A L N W+E + S + +L Sbjct: 292 YSVGTDGTITARYSNGRTATLGQIAMANFKAPEGLQNIGGNQ--WVETSNSGAPNLGTPG 349 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L +EL +I ++SY + + I D +LQTL+ Sbjct: 350 MGSFGLLQSSAVEQSNVDLSQELVNMIIAQRSYQANAQTIKTQDTILQTLVTM 402 >gi|283955452|ref|ZP_06372950.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] gi|283793079|gb|EFC31850.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] Length = 544 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 56/543 (10%), Positives = 136/543 (25%), Gaps = 67/543 (12%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSE 58 F + S NI N + + D + ++ Sbjct: 2 NSFYNGVSGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTVTTQSTNPAQGGYG 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + V+ S + K NN+ + Y + Sbjct: 62 SGSASSNVVFEQGSFVASDSEFDVALQGKGFFGVLGADNNAYYTRNGTFKRDANGYLVDS 121 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN---------------- 162 + + T+ + + + + +++ Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNDSFSIGTTASQQAIK 181 Query: 163 --LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN----- 215 + +L N + D I++ +V + Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVNLDPNKFNITKTEDGKYVVNGSVSKEDV 241 Query: 216 -----------DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN-- 262 + T+ T+ ++NF+ + N I +D V +++ Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNKLDLKGLDENSIKLDTVQIATEQQ 301 Query: 263 --------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G L + + V+P + + A I + N+ Sbjct: 302 KANKDILESDIYNADGSKSTLRVLLERVLPQEGDNIQYKAIAQIYDSNGNAVGDPTEGNM 361 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357 +++ + TI ++ + S + Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGTPYDASKPGSGYGGIYIKEGVEKNVVTQQDG 421 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + N++ +I + + N + L N + + Sbjct: 422 VAEGFFKQYNISDDGSIIAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGNA 481 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + V + V+L ELS LI +++++ S+K I +D+M+Q + Sbjct: 482 SFIMKNGQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 Query: 478 GVK 480 + Sbjct: 542 MKR 544 >gi|39933725|ref|NP_946001.1| flagellar hook-associated protein 1 FlgK [Rhodopseudomonas palustris CGA009] gi|39647572|emb|CAE26092.1| possible flagellar hook-associated protein 1 (HAP1, FlgK protein) [Rhodopseudomonas palustris CGA009] Length = 587 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/424 (20%), Positives = 164/424 (38%), Gaps = 17/424 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL + A + Q + NI NAD Y ++ S VTV Sbjct: 1 MSLNIARSIAFSGLAATQVQISVTSANISNADTTGYTKKTAGQASSVTGGVGTGVTVTGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109 S + K L A +S +G S+ + + S + ++ L Sbjct: 61 TSSVDKLLLKSLIAANSDLGAAGTTNSYLTSLQQLYGSSTSATSTSTGTSLANTLASLES 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + + L V+D + V ++ +QK+R++AD++I + ++ + + Sbjct: 121 ALSSLASTPTSSALQSNVVDALDGVTSQLRETSSGIQKLRSNADQDIASAVGSVNDDVQK 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N AIK A+ D D+R+ LQ +S + +S +N D+ VYT+ G L + Sbjct: 181 IADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQMNVSYYTASNGDLQVYTATGQALVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +++ S + + G++++ + S + GKI AL+ +RD +P Q+ Sbjct: 241 STAHPLSYTTTASVSAATNYGSGGFSGIMLNGVDVTSQITSGKIGALVALRDQTLPAAQS 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QLDE+A+ + S + L + D +S T V + Sbjct: 301 QLDELAQQFVVSLNAVSNGQTTLPAPASLTGTATVSSADA-----LSATGSVRLAVTDSS 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L + +V +L + ++ S + + A + + +S+ Sbjct: 356 GKLISYSDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGVSIGELTSSV 415 Query: 409 GWLE 412 G Sbjct: 416 GSAG 419 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 46/418 (11%), Positives = 107/418 (25%), Gaps = 9/418 (2%) Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 S+ +Q L + S K +L+ S Sbjct: 168 ASAVGSVNDDVQKIADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQ-MNVSYYTASNG 226 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + +N ++N + Sbjct: 227 DLQVYTATGQALVDSTAHPLSYTTTASVSAATNYGSGGFSGIMLNGVDVTSQITSGKIGA 286 Query: 190 FLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + RD L ++++ +S +N + T TV S Sbjct: 287 LVALRDQTLPAAQSQLDELAQQFVVSLNAVSNGQTTLPAPASLTGTATVSSADALSATGS 346 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + + A+ + I + ++A + Sbjct: 347 VRLAVTDSSGKLISYSDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGV 406 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + + + + L S + Sbjct: 407 SIGELTSSVGSAGEGFSDCFGLNDLVTATGASDIAVRSDILSGKSSLSLATLSSAAALTT 466 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDL 421 + + N D + F V G+ + + A + + S + Sbjct: 467 GSSVLSSDGASAANALYDVLTGSTSFKAVGGLAAVTGSFADIASTIVSSVSGKASQASST 526 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + S S+ GVNL EE + L +++ Y +++LI + M L+ V Sbjct: 527 YSAKEAAQSTYANSLSSQSGVNLDEESARLSELQNKYTAASQLIQAINAMFTALVSAV 584 >gi|57505769|ref|ZP_00371695.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016042|gb|EAL52830.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 545 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 52/545 (9%), Positives = 134/545 (24%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ F + S NI N + + + + + + Sbjct: 1 MMGAFYNGISGVKINSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60 Query: 61 ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K++ S + + K + + Sbjct: 61 YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162 + + + T+ + + + + + +++ Sbjct: 121 DSYGNFVLGTMNPAFQGITYSDRVAGLMGDYLNTGTPVNNGFTVNSNDKFTLGTTGSQGA 180 Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204 + +L N K + + K+ S+ Sbjct: 181 LQVPINMYLPPKVTQNVQWKGNLNTNTKTEVVTIDLNPGNFKLEKTADGKFKVSGSVSQN 240 Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 S + + +G + T+ +D+NF +++ + +D V +S+ Sbjct: 241 EVFSAKENDRILLNFIDKNGVKQSFEATLDKDLNFVSKELDLKGLDADSVKLDSVQISTE 300 Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQL-------DEMARVLIGSFSEKD 305 G L + ++P + + A+ + Sbjct: 301 QQKANKDILEAPIYNADGSKSTLRLTLERILPQVGDTMVYKATAQIYNAKGEAVGEPTEG 360 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---------- 355 + N + + + T S S + Sbjct: 361 SMTFNQHGALLSNDIKSVNNPEGGAINIDLGTPYDPNIAGSGYSGIYIQAGKEKSVITRH 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ + +LI + + + L+ N + Sbjct: 421 DGIAEGFFDQYRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + V + VNL ELS LI +++++ S+K I +D+M+Q Sbjct: 481 EASFIMKDGEIVNTAKFKGGFLEQSNVNLSMELSNLIVTQRAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + K Sbjct: 541 INMKK 545 >gi|316936120|ref|YP_004111102.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris DX-1] gi|315603834|gb|ADU46369.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris DX-1] Length = 587 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/421 (20%), Positives = 161/421 (38%), Gaps = 16/421 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL + A Q + NI NA Y + + T+ Sbjct: 1 MSLNIASSIALGSLMTTQVQISVTSSNISNASTTGYTVKTANQSATVTGGVGTGTTITGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLES 113 S + K L +SA+G S+ + + D N S ++ L +L S Sbjct: 61 TSTVDKLLLKSLVQATSALGSANTTNSYLDQLQALYGTSGDSSNTSLADTLTTLEQALSS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + S L VI + + F ++ +Q +R+DAD+ I+ + ++ L+ + + Sbjct: 121 LSSDPSSSSLKANVISALDTLATRFRDTSSGIQDLRSDADQSIDDAVDDVNEQLNLIAGL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I+ +AS D DQR+ +Q+I+ + +S + ++ DM +YT G L ++ Sbjct: 181 NAQIRLASASGQATGDLEDQRNTAVQEIASRMNVSYFISSSGDMQIYTGSGRALLDSTVH 240 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++++ + T ++ + G + + + G I AL+ +RD+ +P Q Q Sbjct: 241 ELSYTPAATVTSSTTYSASSTGGFSGITVDGVDVTGQISSGSIGALIVLRDTTLPAAQAQ 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD++A L S + + L + D ++ T V Sbjct: 301 LDQLATELADSLNAVSNLGSALPPKSTLTGITAVTASDA-----LNGTGTVRIAVTDQKG 355 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L G + V +L + I+ S + + VA ++N + S+G Sbjct: 356 ALVSYGDLDLASYATVGDLVNAVNGISGLSASIDSSGHVVIVASSSSNGIAIANMTGSVG 415 Query: 410 W 410 Sbjct: 416 D 416 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +P + + T + N + V+ +G+ V G + + Sbjct: 318 LGSALPPKSTLTGITAVTASDALNGTGTVRIAVTDQKGALVSYGDLDLASYATVGDLVNA 377 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 N + ++ + S + +S + + + D L + V + Sbjct: 378 VNGISGLSASIDSSGHVVIVASSSSNGIAIANMTGSVGDDSLGLSDYLGLNDVVTATSAA 437 Query: 347 NPSFLRDGGSVSK------------KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + S + AG + + + F V G+ Sbjct: 438 DFKVAAGLLADSSKLPTSSLSSASSLTAGSTVLSAGSSTVTDALYSALTGTTNFAAVGGL 497 Query: 395 NTN-VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + +YA I + S + D + Q + +S + S+ GVN+ EE + L Sbjct: 498 GASDSSFADYAAEIIAHVATIASAAEDAYTAKQTAQSTLSSALSSQSGVNVDEETAKLSN 557 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ Y + +LI ++M LL V+ Sbjct: 558 LQNQYAAAAQLIQAINEMFDALLSAVQ 584 >gi|297516687|ref|ZP_06935073.1| flagellar hook-associated protein FlgK [Escherichia coli OP50] Length = 247 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 90/249 (36%), Gaps = 14/249 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSNLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +ND I T + ++ LDQRD L+ ++++I+G+ V++ + ++G +L + Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238 Query: 231 VPRDINFEK 239 Sbjct: 239 STARQLAAV 247 >gi|305432527|ref|ZP_07401689.1| flagellar hook protein [Campylobacter coli JV20] gi|304444566|gb|EFM37217.1| flagellar hook protein [Campylobacter coli JV20] Length = 545 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/545 (10%), Positives = 141/545 (25%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50 ++ F + S NI N + + D + Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------- 103 S A + F + + N Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 104 -------ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + S + L ++ V F ++ + I A + + Sbjct: 121 DSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNSGFTVNSNDAFNIGTTASQGV 180 Query: 157 ------ELEISNLRRFLSELTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEI 204 + + + +N +K + D + V+ +S+ Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDPAKFNVQKTEDGKYVVSGSVSKE 240 Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 S + + +G T+ T+ ++NF+ + N I +D +S+ Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|217976240|ref|YP_002360387.1| flagellar hook protein FlgE [Methylocella silvestris BL2] gi|217501616|gb|ACK49025.1| flagellar basal body FlaE domain protein [Methylocella silvestris BL2] Length = 414 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/481 (9%), Positives = 111/481 (23%), Gaps = 68/481 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + + + + +++ NI N+D Y + T + + Sbjct: 1 MSLFSALTASVSGMAAQANKLSTVSDNIANSDTTGYKQAMTEFENLISQAGTSSYNASGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + N S + N + Sbjct: 61 ATVVRYNISEHGNLKSTTSSTDLAIQGNGFFLVGDANGSVFLTRAGNFKPDATGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + + + + + + L+ N I Sbjct: 121 GFTLLGYSASSGNSSSAGLSGL------EPVNIFGDGLKAVPSTTGKLTANLNSNADIVT 174 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + V + ++ + + + Sbjct: 175 GSLPSANVAG---------------------------SVYTSKTSLVTYDNLGNAVKLDV 207 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S T T+ + + G + Sbjct: 208 YYSKTGTNTWEASIYNAADAAPGGGFPYSGAALA-------------------------- 241 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 N G L ++ + Q S + + Sbjct: 242 ------TQTLNFSASDGSLTGQSSISLSVPGGANVAIDLSGTTQLASAFEVSAATTNGNA 295 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 +++ L + + K P+A + + + A + + S Sbjct: 296 PSAVQSVSISPDGTLSEVFVNGTQKAIFTIPLATVASVDNMTSLAGDVFSD--NSLSGPI 353 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + F I + V+L +L+ +I ++SY ++K+ ++L TL + Sbjct: 354 LVGDPGLGGFGSIQSEKLESSTVDLASQLTDMIVAQRSYESNSKVFQTGSELLSTLNNML 413 Query: 480 K 480 K Sbjct: 414 K 414 >gi|57169039|ref|ZP_00368167.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] gi|57019584|gb|EAL56274.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] Length = 545 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 58/545 (10%), Positives = 140/545 (25%), Gaps = 67/545 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50 ++ F + S NI N + + D + Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------- 103 S A + F + + N Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 104 -------ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + S + L ++ V F ++ + I A + + Sbjct: 121 DSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNSGFTVNSNDAFNIGTTASQGV 180 Query: 157 ------ELEISNLRRFLSELTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEI 204 + + + +N +K + D + V+ +S+ Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDPAKFNVQKTEDGKYVVSGSVSKE 240 Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 S + + +G T+ T+ ++NF+ + N I +D +S+ Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300 Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G L + V+P + A I + Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGENIQYKAIAQIYDSNGNAVGNPTEG 360 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355 N+ +++ + TI ++ + + + Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVAKNIVTQQ 420 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N++ ++ + + N + L+ N + Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + V+L ELS LI +++++ S+K I +D+M+Q Sbjct: 481 DASFIMKDGQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540 Query: 476 LEGVK 480 + + Sbjct: 541 INMKR 545 >gi|312879594|ref|ZP_07739394.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] gi|310782885|gb|EFQ23283.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] Length = 554 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/388 (11%), Positives = 99/388 (25%), Gaps = 27/388 (6%) Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + V D A T + D + + ++ + + + + Sbjct: 169 SDDTPPVTEVYDVAYTNGNLVFTGQTNGEAWSYPVDASMTYDSFSVSKTTAPNAGDYNIL 228 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP----- 232 + D S T+ + V G Sbjct: 229 VDFGEKTGNTMPLYLLIDNGTPPPSVAEYTVTLNDDGTFASVTQVTGPVFAGLTVDITDN 288 Query: 233 -RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQN 288 +NF+ +S + + + + S++ + L + V P + Sbjct: 289 KYGVNFKFRDSAPGAQQVTALTVSQKISSTHSTKLDVYDTLGNPHTLEVVWSKVAPNRWD 348 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL----------------DNKLCQ 332 S + + G + G DL D Sbjct: 349 WNAFFPSEPTLVLSGTNGRGTLVFDTAGKITSGGTADLRVPFSVIGAEDSVIKLDFDGTG 408 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 E I QY S + + ++ + Y + N+ +A Sbjct: 409 MDKELIDGVTQYGSGFTTKGYYQDGYAMGVLEDYAVSADGTVSGVYSNGKNQPLYQVALA 468 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L++ E S + + I S V+L +E LI Sbjct: 469 LFANPQGLVKEGDTVFS--ESANSGMAQVMTPMEGGAGKIMGSNLEMANVDLSQEFVNLI 526 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I +D++L+ L+ + Sbjct: 527 VAQRGFQANARVITTSDQVLEELINLKR 554 >gi|218528727|ref|YP_002419543.1| flagellar hook protein FlgE [Methylobacterium chloromethanicum CM4] gi|218521030|gb|ACK81615.1| flagellar basal body FlaE domain protein [Methylobacterium chloromethanicum CM4] Length = 403 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 57/480 (11%), Positives = 126/480 (26%), Gaps = 77/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ V + N S + +++ NI+NA Y R + + N Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L S G + + ++ + S Sbjct: 59 GAVETTLRRSVSEGG------------------PIASTNSDKDLAIQGNGFFVVSDAAGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + N + + A+ ++ + V Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + V + IG + +++ V R + + Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + F+D S++ G+ + S + N Sbjct: 209 MTKTAANTWSVEFLDPAPPSTSLGTTSVTFDGNGKITGSASTLVKVPN------------ 256 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 I + Q N + L S Sbjct: 257 ------------------------------GGSIPVDLRGLTQLSGNHN-LSGTADGSSP 285 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y D K P+A + + L A N S Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q + V++ EL+ +I+ + Y ++K+ M +++L+TL+ + Sbjct: 344 IGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403 >gi|326386936|ref|ZP_08208550.1| Flagellar hook-associated protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208616|gb|EGD59419.1| Flagellar hook-associated protein [Novosphingobium nitrogenifigens DSM 19370] Length = 454 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 62/490 (12%), Positives = 132/490 (26%), Gaps = 50/490 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 + + + A +NI NA YVRR Sbjct: 2 TSNLLSIGASGARAAQIALDVTGQNIANASTDGYVRRAANNVELVSPSGWSAPNDISLAG 61 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VTV + +S + + E N+ I ++ Sbjct: 62 VTVSGITRNADIYTQAEVRRTASDTARGNATVTGLTNVETAV----ENSGVFTTIGNFQN 117 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + ++ L V+ + F +A + + D EI +S + S+ Sbjct: 118 ALTSLKQTPNDTSLRAAVMQAGSAMTSAFQIAATSLSSTQQDLQGEIGDGVSQVNTLASQ 177 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L +N + ++ L D + I + N SDG+ Sbjct: 178 LATINLKLSTTASAASADAGSLTTSDRASLMDKRDQLLGQISQYANVATTLNSDGSANVN 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T T S V ++ G A Q + + Sbjct: 238 LGGVSGPPLVTGATTNTLSSTTASDGTVSLAMGTAPVTLSGGSIAGQQASLTKLNQISTD 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD +A + + + + + G + Sbjct: 298 LDSLAATIANTVNTQQANGADLSGTTGAALFS---------------------------- 329 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 G+ + + + + N ++ + N + Sbjct: 330 -----GTTAATLSMATTDGSKIAAAAAGSVANSNDATNLTALSSALSTANPAGTMNNILY 384 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + + + + + S S++ GV+L E L++ +Q++ S K++ Sbjct: 385 DISGSVKTATTTRDTLKTLSDAAAASLSSSAGVDLNTEAVNLVRFQQAFQASGKVMQTAS 444 Query: 470 KMLQTLLEGV 479 + T+L Sbjct: 445 DIFTTMLNLK 454 >gi|308186393|ref|YP_003930524.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] gi|308056903|gb|ADO09075.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] Length = 418 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 44/476 (9%), Positives = 113/476 (23%), Gaps = 63/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + AS I NI N+ + V + +N Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + +L N Sbjct: 62 NDGATTTTSRGLDVALSGNGFFRMTD------SSGGVFYSRNGQLTLDANRNLVNTQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +Q Sbjct: 116 VTGYPASGSPATIQ---------------------------------------------- 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + G+ + + + T+ T ++ + +S Sbjct: 130 AGANPVALKIPTTQMSARATTTAGLVANLNSTDTTPTVTTFSTANADSYNKKTTATVFDS 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + F+ +S + + R + + Sbjct: 190 QGNDHALDMYFVKDTTSNSWTVHTIDGNTGTSAGDFR------MAFDTSGKLTSVSKLDA 243 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ ++ GL + G + + Q +F Sbjct: 244 TGAVVSTTTDGTVGLTLNVGGANGAVANQPINLSMLGSLQQNTGATTFGSPTQDGYAPGD 303 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + ++ + L N W + S + Sbjct: 304 LTSYAINDDGTITGSYSNQKTQLLGQIVLSSFSNPEGLESKGDNV--WQASSASGQAAIG 361 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F ++ + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 362 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 417 >gi|261313951|ref|ZP_05953148.1| flagellar hook-associated protein FlgK [Brucella pinnipedialis M163/99/10] gi|261302977|gb|EEY06474.1| flagellar hook-associated protein FlgK [Brucella pinnipedialis M163/99/10] Length = 201 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 92/201 (45%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A++ S+Q + + RNI A + +Y RR P V Sbjct: 1 MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +SA L + + D+Y+ SP+ I LRD+L++Y+ + S Sbjct: 61 EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 LG +V+ A+ + N R+VQ +R DAD+EI ++N+ L++ N + Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180 Query: 181 TASKHDAHDFLDQRDVLLQKI 201 T D D+LDQRD LL+++ Sbjct: 181 TRMGRDVSDYLDQRDALLKQL 201 >gi|253688972|ref|YP_003018162.1| hypothetical protein PC1_2595 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755550|gb|ACT13626.1| protein of unknown function DUF1078 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 405 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/473 (9%), Positives = 97/473 (20%), Gaps = 70/473 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N AS I NI N+ + V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ + ++S I+ + Sbjct: 50 -------------MGVKVASVLQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSVYYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 R + + + T Sbjct: 97 NGQFMLNG---------------RNIVNAQGMQLTGYPVAGTPPVVQTGADPVPLTIPDG 141 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D + + + T Sbjct: 142 DMLANRTTTASIKANLKSSDSVP-----------------------ANSWATTPGGEGTY 178 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 S++ DG N K + E + Sbjct: 179 NSKTALTTYDGQGNVHNYTLYFVKTANNTWQTYAKDDAVT-----PATYQNAGTLNFEAN 233 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 ++ + + + + + Q + S+ + Sbjct: 234 GALSSTGATAHTPFTINMTGTNGAAGGTFTLDLTGSVQQNTEYSYKSPTQNGFGPGSLTG 293 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ Y + + +AG L N W E S + + Sbjct: 294 YAINDDGTIVGSYSNGQKQALGQILLAGFANPEGLSPEGDN--AWSETASSGQAVVGLAG 351 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 352 SGNLGKLVGKSTEMSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 404 >gi|170748125|ref|YP_001754385.1| flagellar hook protein FlgE [Methylobacterium radiotolerans JCM 2831] gi|170654647|gb|ACB23702.1| flagellar basal body FlaE domain protein [Methylobacterium radiotolerans JCM 2831] Length = 407 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 50/480 (10%), Positives = 114/480 (23%), Gaps = 73/480 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L V + + N S + ++ NI+N + Y R T + + + + + + Sbjct: 1 MGLYGVLHAGVSGMNAQSNRLGTVADNIQNQNTTGYKRASTEFSSLLIDPSPGSYDAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + E + T + + ++ Sbjct: 61 DTVVRHRISE-----------------EGTGTATNSPTDLTIKGNGFFVVKDGSGRSYLT 103 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 V ++V + + + + +++L + Sbjct: 104 RAGNFVVDGQTGDLVNAAGMRLQGYSLANGEPSVSLNSFDGMMNVNVAKLAMKTSPSTAG 163 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + D + + I Y + G + Sbjct: 164 TLEGNLFSDTPIATNPPGYSLKSSITT------------YDNLGHPFKADLYFAKTANNT 211 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T S P G + A + VP Q ++ Sbjct: 212 WQVTAYDASLPGNYPGTPLGGPTTLTFNAFGQIAGAPKLNFTVPNGQPFTLDL------- 264 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + Sbjct: 265 -----------------------------------SPLSQVADVAQVSDIKARSVNGNAA 289 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + Y D + PVA + + L A N S Sbjct: 290 SAVEGADIDTDGTVYAIYRDGSRRAAFRIPVASVGSPDNLTPRAGNVFDV--NPESGPAQ 347 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + HI V+L EL+ +I+ + +Y ++K+ +ML+ L+ + Sbjct: 348 IGFANVGGRGHIQSKMLENSTVDLGNELATMIEAQTTYGANSKVFQTGSEMLELLVNLKR 407 >gi|238762359|ref|ZP_04623330.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] gi|238699344|gb|EEP92090.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] Length = 397 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 57/472 (12%), Positives = 117/472 (24%), Gaps = 78/472 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + ++Q +I NI N+ K + T + Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSATKGFKSGRTEFSSMY------------------ 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S +G S KE + + ++ + Sbjct: 44 ---AQSQPLGVGVSGTSQSIRKEGSIDRTGNAMDLAISGNGFFV----VKNSNGDEAYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N S ++Q ADA I+ Sbjct: 97 AGMFTTDNNGLLVNASGMKLQGYSADATGNIQT--------------------------G 130 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L K S + + ++ + ++ +S Sbjct: 131 TIGDLKISTSGLPAKASSKLDFMANLPASDTPPTNRIFSPSNEDSYNYMSTSTAYDSLGR 190 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 F+ S + DSV+ + L ++ S + ++ Sbjct: 191 EHLLTQYFVKSSAPSE-----------WKVHTALDSVLKTGSHDLKFDTSGVLTSGNTQN 239 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I Q++S + + N Sbjct: 240 ISGT--------------YSPAGADNFSIDINYTGTTQFQSAFLPTVNKSNGYTAGTKNG 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + + +A L A+N W ++S + L Sbjct: 286 ERVESDGSVFATFSNGERMLQGKLALANFANANGL--AAQNGTTWSATSKSGAALLGAPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I V+L EL L+ +++Y + K+I D M+ L + Sbjct: 344 TGLLGGIEVGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395 >gi|310767290|gb|ADP12240.1| flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 402 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + + N+ Sbjct: 62 NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ N A Sbjct: 116 LTGYPATGTPPTVQT----------------------------------GANPVALSVPA 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A ++ + + N+ T F+++ Sbjct: 142 TAMAAKATTTAAMTANLNSTDAVKNYANLNINDSTTYNAKSSMTAFDSLGNAHTVNLYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +D ++ + + L+ + V QL Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNSNGQLVTPNNGQVSFTMGQL------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N Q +F K Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ Y + + ++ L N W S Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSASAASGQALSG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|291538503|emb|CBL11614.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 547 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 44/549 (8%), Positives = 112/549 (20%), Gaps = 77/549 (14%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------ISPENV 50 A + + I NI N + + + V Sbjct: 1 MYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATGTGGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHYISKL 107 + S A + ++ + + Sbjct: 61 NAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTRAGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-- 165 + + ++ ++ + Sbjct: 121 YVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQANVSG 179 Query: 166 --------------------------------------------FLSELTVVNDAIKFKT 181 + ++N Sbjct: 180 IIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDGTTFY 239 Query: 182 ASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 D D L +++ N V +++ T E Sbjct: 240 DPATSQVKLEDVFGSKTADATLGTYNQVQSGYYYDATQNKFYVGSNNNGTELEWDAITST 299 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 F++ N+ T T ++ + S G K I V + Sbjct: 300 FKEKNAPTNTHSLKQVYGISDAMVSKIGGGQAKAAIANGTLTISGDVTDYAIDFSTKDGT 359 Query: 297 LI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 S ++ + + N + +D + + + Sbjct: 360 FTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTGSIDD 419 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G K ++ + Y + + VA L + N Sbjct: 420 GVTGKGKKLGAMIGISIDNNGLIKGTYDNGNTEILGQIAVAQFANASGLEKVGENCYRTT 479 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + ++ V+L E + +I ++ + ++++I +D + Sbjct: 480 LNSGEFDGIGVEISADG-SSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITTSDTL 538 Query: 472 LQTLLEGVK 480 L+ L+ + Sbjct: 539 LEELVNLKR 547 >gi|323527706|ref|YP_004229859.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001] gi|323384708|gb|ADX56799.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001] Length = 657 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 131/449 (29%), Gaps = 23/449 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + + V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGYLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT + L+ S+ S + + I+ ++ Sbjct: 61 VTVTRQYSQYLTTQLNNAQSSSSSLSTYNSLISQLNNLVGSPTA--GIASAITSYFTGMQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N S +T + A+ + N + ++ +R + ++ +S + + ++ Sbjct: 119 NVANNASSLATRQTAMSGAQTLANQINAAGQQYDALRESVNTQLSNTVSQINSYTQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LDQRD+ + +S++IG+ + +N V+ S+G L Sbjct: 179 LNGQINAASTQGQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGAYSVFMSNGQPLVSAGN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + S + G + L+ R + + Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAPPQDLPASKIEGGTLGGLVAFRSQTLDPAE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TICVNP 342 QL +A + ++ + V G + Q + Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGSPTVYANTQNTGNASLSVSFANAA 357 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q + L GS + + G ++ + N + AG + V Sbjct: 358 QPTTGDYTLAFNGSSYTLTDNSTGTVVGSASNLSQPINGLNFSMTGTMNAGDSFTVEPTR 417 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 A NS + S Sbjct: 418 GALNSFATATTDASAIAAASPVLGAAATT 446 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/442 (8%), Positives = 105/442 (23%), Gaps = 3/442 (0%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + +V + + L S L + A + Sbjct: 214 QVVNSNGAYSVFMSNGQPLVSAGNSFNLGTAPSTGDSSELSVQYLGQAGANPAAPPQDLP 273 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + L ++ + + Q +A + + Sbjct: 274 ASKIEGGTLGGLVAFRSQTLDPAEAQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVG 333 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + ++ F A++ D+ + +++ + + +N Sbjct: 334 SPTVYANTQNTGNASLSVSFANAAQPTTGDYTLAFNGSSYTLTDNSTGTVVGSASNLSQP 393 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ---GSAVPKGKIKALL 276 ++ T+ +F + + D +++ G+A + Sbjct: 394 INGLNFSMTGTMNAGDSFTVEPTRGALNSFATATTDASAIAAASPVLGAAATTNTGTGAI 453 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + + Sbjct: 454 SPGTVTAGYTMPSSTTTLTYNGTGLTGFPVGSTVTVAGSPATTYSITSATTVVPYSSSTG 513 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + + N ++ + + + Sbjct: 514 ASLTINNTSAGQMNNVSVTISGVPAAGDKFTIGPNTGANNDGRNALALSNLSTAKSMNGG 573 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 VTL N + + + + I+ + + GVN+ EE + L++ +Q Sbjct: 574 TVTLTGAYANYVNEIGNQTNQIQTASTAQASLVTQITTAQQSVSGVNINEEAANLLQYQQ 633 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 Y ++K+I + QTLL Sbjct: 634 LYQANSKVIQTAQTLFQTLLGI 655 >gi|146305250|ref|YP_001185715.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina ymp] gi|145573451|gb|ABP82983.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 395 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 45/474 (9%), Positives = 122/474 (25%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + ++Q +I NI NA + T ++ +Q + + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEF----GSIYADSQAMGVEVLATT 57 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ + ++ + + + Sbjct: 58 QSISQGGSL---------------------VTTGRSLDLAISGGGFFVTRGSNGDVSYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + A++ N + ++Q DA + + + A Sbjct: 97 AGVFGADKDNYIVNAAGLKLQGYPVDAAG---------NLLVGAMGDLQLQNANLPARAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D+ F+ D ++ + + + ++ T +F++ ++ + T Sbjct: 148 DSLAFVMNLDS-----NQSVPTAAPFDPADVNTYNSTYTTKVFDSQGKEHTLTQYFVKTG 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + Sbjct: 203 DNAWEAHYYADGAAVGGP---------------------------------------QAL 223 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N + L I+ + QY S+ + S Sbjct: 224 TFGTNGSLTAPVGPVAVGFPLPGVDPMNIAIDYSNSSQYGSDFVVTSNRASGYAAGEQTG 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + +Y + +A L + W+E S + + + Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKNV--SGTAWVESAESGAALIGVPG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F + V+L ++L L++ +++Y + K++ ++ Q L + Sbjct: 342 VGPFGELVAGSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKELTQVLFGAI 395 >gi|188579925|ref|YP_001923370.1| flagellar hook protein FlgE [Methylobacterium populi BJ001] gi|179343423|gb|ACB78835.1| flagellar basal body FlaE domain protein [Methylobacterium populi BJ001] Length = 402 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 54/480 (11%), Positives = 124/480 (25%), Gaps = 78/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ V + N S + +++ NI+NA Y R + + N Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L S G + + ++ + S Sbjct: 59 GAVETTLRRSVSEGG------------------PIASTNSDKDLAIQGNGFFVVSDAAGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + N + + A+ ++ + V Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S + + + V S I + +++ V + + + Sbjct: 161 STSATISGNLSFETPVYDPATSTI-------------GYSKKNSLKVYDNVGQPVTLDVQ 207 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + F + ++ G+A + S + N Sbjct: 208 MTKTAANTWSVKFFNPADATTPVGTATVAFDGNGKVTSGGSTLVQVPN------------ 255 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + I + Q + + L S Sbjct: 256 ------------------------------GREIKVDLGGLTQLSGDHA-LSGTADGSSP 284 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y D K P+A + + L A N S Sbjct: 285 TSVSGTAFGEDGTVYAVYSDGTRKAAFKVPLADVASPDNLSPRAGNVFTT--SAESGDIQ 342 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V++ EL+ +I+ + Y ++K+ M +++L+TL+ + Sbjct: 343 IGFAGAGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 402 >gi|259908812|ref|YP_002649168.1| flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224964434|emb|CAX55943.1| Flagellar biosynthesis, hook protein [Erwinia pyrifoliae Ep1/96] gi|283478794|emb|CAY74710.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 402 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + + N+ Sbjct: 62 NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ N A Sbjct: 116 LTGYPATGTPPTVQT----------------------------------GANPVALSVPA 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A ++ + + N+ T F+++ Sbjct: 142 TAMAAKATTTAAMTANLNSTDAVKNYANLNINDSTTYNAKSSMTAFDSLGNAHTVNLYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +D ++ + + L+ + V QL Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNANGQLVTPNNGQVSFTMGQL------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N Q +F K Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ Y + + ++ L N W S Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSASAASGQALSG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|333004885|gb|EGK24405.1| flagellar hook protein flgE [Shigella flexneri VA-6] Length = 399 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 49/477 (10%), Positives = 110/477 (23%), Gaps = 84/477 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + D +S + + + +++ N + L Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGTCAMANNIATGAINGAEPATFSLSFLN 261 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 S + N + + + K Sbjct: 262 SMQQNTGAN--------------------------------------NIVATTQNGYKPG 283 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + ++ +Y + + +A N L N W S L Sbjct: 284 DLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALL 341 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L T + Sbjct: 342 GTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTRVNL 398 >gi|119389100|pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) gi|119389101|pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk) Length = 463 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 46/348 (13%), Positives = 111/348 (31%), Gaps = 4/348 (1%) Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 L + + + + AD + + + SL++ N Sbjct: 3 YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQTLVSNA 60 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + + +I AE +V F T+ + ++ + I ++ + + ++ +ND I Sbjct: 61 EDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 Query: 179 FKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 121 RMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQL 180 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 +S T + + + G + LL R + +N L ++A Sbjct: 181 AAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALA 240 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 +F+ + +++ G + +T+ + + + Sbjct: 241 FADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYK 300 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + D+ K I + T + Sbjct: 301 IVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 348 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/318 (10%), Positives = 74/318 (23%), Gaps = 11/318 (3%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI- 201 ++ + ++ + + +S + D I Sbjct: 146 NKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIE 205 Query: 202 --------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 + G+ T + D T L + K + Sbjct: 206 IPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFS 265 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 I VV SN +A + A ++ DS + D + Sbjct: 266 IGSPVVYSNSNNADKTVSLTA--KVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATK 323 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + + +++ + P + + ++ + + L D Sbjct: 324 DADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVD 383 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + N T + + + S V + Sbjct: 384 TGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLY 443 Query: 434 ESYSNTVGVNLQEELSFL 451 + + GVNL EE L Sbjct: 444 KQQQSVSGVNLDEEYGNL 461 >gi|110805093|ref|YP_688613.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] gi|110614641|gb|ABF03308.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] Length = 402 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q+ + I + + + +N Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L T + Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401 >gi|315301954|ref|ZP_07872952.1| flagellar hook-associated protein FlgK [Listeria ivanovii FSL F6-596] gi|313629677|gb|EFR97812.1| flagellar hook-associated protein FlgK [Listeria ivanovii FSL F6-596] Length = 444 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 65/443 (14%), Positives = 136/443 (30%), Gaps = 29/443 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47 M L FN + + + A +NI N + Y+R+ + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQAIYSDGGLLGGNKQTG 59 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + + + + N P+ + Sbjct: 60 YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +KN + ++ + N ++++ + E + +L + Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 +L +N AI A + +D L+QRD +L +S GIS NN V + G L Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S Q +P+G I A +++ + + +Q Sbjct: 237 VVQGDETTEITSTRTAS----------GFEFSVSGQTLHMPEGSISASVRVNQNEINSYQ 286 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ + L + + N I D ++ N + +S + Q Sbjct: 287 AKIETFSNGLAKALDDIQVKNVNKTMDDLQKINDALQANPN-DEKLLSNREELLRQLEKF 345 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLEYARN 406 P R G ++ + + G +N D F+ + IN +T + Sbjct: 346 PGVTRSGDTIDIGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWMINPTITNNAENKQ 405 Query: 407 SIGWLEKNRSDSHDLHMKSQVVF 429 +G + + + F Sbjct: 406 FLGVIAADIASLKTDKNIEGTTF 428 >gi|27378814|ref|NP_770343.1| flagellar hook-associated protein [Bradyrhizobium japonicum USDA 110] gi|27351963|dbj|BAC48968.1| flaN [Bradyrhizobium japonicum USDA 110] Length = 582 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 90/423 (21%), Positives = 163/423 (38%), Gaps = 20/423 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55 MSL A + + Q + NI NAD Y + T S VTV Sbjct: 1 MSLDITRLIAFSGLSATQVQISVTSSNISNADTTGYTTKTANQTSSVTNGVGTGVTVTGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109 S + K L +S +G ++ + + S + ++ L Sbjct: 61 TSTVDKLLLKSLIGATSELGAADTSNTYLTSLQKLYGSTSTSDSSSTGTSLANTLADLES 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + S L + +VV ++ +QK+R++ADK+I + ++ + L + Sbjct: 121 ALSSLASTPSSASLQSNAVSALNDVVSQLRETSSGIQKLRSNADKDIASSVDDVNKDLQQ 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + VN IK AS D DQR+ LQ ++ + +S +N D+ VYT+ G L + Sbjct: 181 IANVNAEIKQVAASGQSTADLEDQRNTALQDVASKMNVSYFTASNGDLQVYTTSGQALVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + I++ + + ++ I ++GV + S + G I AL+ +RD +P Q+Q Sbjct: 241 SSAHTISYTTAANVSSSTSFGAISVNGVDI----TSQITSGDIGALVTLRDKTLPAAQSQ 296 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD++A+ + + A + L + D +S T V+ Sbjct: 297 LDQLAQQFTSALNSVSNSASSVPPPTSLTGTTAVASTDA-----LSATGTVHIAATDQSG 351 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L + V +L + I+ S + N A + N + +S+G Sbjct: 352 NLVSYADLDLSSYATVGDLVTAINGISGLSASVDSNGHLTISATGSGNGVAINEMTSSVG 411 Query: 410 WLE 412 Sbjct: 412 SSG 414 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 49/451 (10%), Positives = 123/451 (27%), Gaps = 9/451 (1%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + ++ + + ++ + Sbjct: 130 SSASLQSNAVSALNDVVSQLRETSSGIQKLRSNADKDIASSVDDVNKDLQQIANVNAEIK 189 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 D + + L + V + + + A Sbjct: 190 QVAASGQSTADLEDQRNTALQDVASKMNVSYFTASNGDLQVYTTSGQALVDSSAHTISYT 249 Query: 159 EISNLRRFLSELT-VVNDAIKFKTASKHDAHDFLDQRD-------VLLQKISEIIGISTI 210 +N+ S VN + D + RD L ++++ + Sbjct: 250 TAANVSSSTSFGAISVNGVDITSQITSGDIGALVTLRDKTLPAAQSQLDQLAQQFTSALN 309 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 +N+ V T V + + + + A Sbjct: 310 SVSNSASSVPPPTSLTGTTAVASTDALSATGTVHIAATDQSGNLVSYADLDLSSYATVGD 369 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + A+ I + N ++ G+ + + + + + Sbjct: 370 LVTAINGISGLSASVDSNGHLTISATGSGNGVAINEMTSSVGSSGEGLSDYFGLNDIVTG 429 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + + S+ L S S + + +G ++N+ D+ + F Sbjct: 430 TSAADIAVKSSFLSGSSELPLATLDSSSTLTVGSRVLSSGSATVVNNLYDTLTGSRSFAS 489 Query: 391 VAGIN-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 G+ + + +YA + + S + + + + ++S S+ GVNL EE + Sbjct: 490 AGGLAESTGSFADYAATIVSDVASKASQASSAYTAKETAQSTYADSLSSQSGVNLDEESA 549 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L ++ Y+ ++ LI + M LL V+ Sbjct: 550 RLSTLQNKYSAASALIQAINTMYSALLNAVQ 580 >gi|309779447|ref|ZP_07674208.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] gi|308921688|gb|EFP67324.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 56/473 (11%), Positives = 113/473 (23%), Gaps = 71/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVSVTKVSQ--------------------AFTQGNVTITGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + R Q ++ ++ T N ++ Sbjct: 87 SGFYRMVDQGSGQVSYTRNGQFQ------------TDKNGYVISATGQNLTGYGVDSTGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + + ++ + +T N D T T N Sbjct: 135 VNTAVLTKLQIPVNDLAPLATTNTAFAINLDAAATVPTTTPFSATNSATFNHSVSEQ--- 191 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ V G + D P N + + G + Sbjct: 192 ------VYDGTGTAHMLTNYYVRTGTGWNVYSQVDGNNPTGGNPVTSLTFNTSGQLTSSP 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + P + QY + Sbjct: 246 SKVAVAFGTP-------------TGMSISNIDFTGTTQYGGGYNDTTVTQDGYATGRLAS 292 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + +A L N W+E + S + L Sbjct: 293 YSVGTDGTITGRYSNGRTSVLGQIAMANFKAPEGLQNIGGNQ--WVETSNSGAPGLGTPG 350 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D +LQTL+ Sbjct: 351 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSL 403 >gi|297569153|ref|YP_003690497.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] gi|296925068|gb|ADH85878.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] Length = 806 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 37/386 (9%), Positives = 98/386 (25%), Gaps = 6/386 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + ++ + + +F + + + Sbjct: 427 ADGEFLSQLANQFGAVSAGIDADGRLTLRAPGGASRMAITGIDFVDAIADFTTVNPFGSG 486 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + + T + D + + I Sbjct: 487 AVNVSSTKKEVVAPVQTYSAPYDTTTDTDPPSLISAATRWDAVYVDGNPDPAIDFDGDPA 546 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + T DGT L FE TV + + + V + + + + Sbjct: 547 ISYAIMTRDGTLLEGEYSN---FEASPDSTVQGFLDHLSNEYDVDAYIDNTGRLVIRDRV 603 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 D + + I ++ D + + G +G + + Sbjct: 604 ADPGGDEASQLNFRIMAYTDMEEIFGPADMDDFG-DFHVISGSPERNGSQTGTAVDNRFG 662 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 QY ++ + + + ++ + ++ + +A Sbjct: 663 DTEAMFTTQYANSSTTIYQDQNGFAAGFLQSVSVDTAGIITGNFSNGQVLMQAKVALADF 722 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L + N + +S + I+ + V+L E +I Sbjct: 723 ANLQGLHKVGGNI--FRATTQSGAPVTGEPGTNGLGEIAPNSLEMSNVDLGTEFVKMITT 780 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++K+I TD+ML L+ + Sbjct: 781 QRGFQANSKMITTTDEMLNELINIKR 806 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 34/347 (9%), Positives = 75/347 (21%), Gaps = 22/347 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + + + + NI N + + + + + Sbjct: 1 MSLSGSLYAGISGLSTMGNGMSVLGDNIANVNTVAFNSSRSTFQDVLSQSVSTAAGTAQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + + S+ + F M+ D + R Sbjct: 61 GRGVTLTTVDGLFAQGSFESTSTPTDMAIGGEGFF----MLRGGDSAEADMFTRAGEFRF 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQ------NFNTSAREVQKIRADADKEIELEISNL 163 + + + +D ++ + S VQ + D ++ + Sbjct: 117 DQHGFLTSPGGHFVQGWSVDKNTGQIEGTIGDIRMDRSTPPVQTEQIDLIVNLDARVDQA 176 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + A A+ + L D I + N + TSD Sbjct: 177 SASTLYDSWNGTADDPIAATNYQYTTSLKVYDSKGVARDVTIYFDRTAKENEWEFLVTSD 236 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + + NP + + + G I + Sbjct: 237 PAA-DRRELSEAEKQTYAPDEQYNYQNPAHRGAGALMYGKINFDNNGNITTIDTWDVPAD 295 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + N P + D Sbjct: 296 GRVDPDRTTNRSNRLDDSGNYPVFDANFTGDPQTIALNFGARSDGSS 342 >gi|296157449|ref|ZP_06840284.1| flagellar hook-associated protein FlgK [Burkholderia sp. Ch1-1] gi|295892221|gb|EFG72004.1| flagellar hook-associated protein FlgK [Burkholderia sp. Ch1-1] Length = 657 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + + S V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIENPVYAESGGQYTGSGYLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L+ S+ + + + I+ L+ Sbjct: 61 TTVTRQYSQYLTTELNNAQSSGSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N S +T + A+ +V N + ++ +R + ++ +S + + ++ Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYSQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LDQRD+ + +S++IG++ + +N V+ S+G L + Sbjct: 179 LNGQIAQASTQGQPPNQLLDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSAN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + + S + G + LL R + + Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAAAPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL +A + ++ + G + Q Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFADPT 357 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + + + + S N + G Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAG 408 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 34/360 (9%), Positives = 87/360 (24%), Gaps = 1/360 (0%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + V N + + A + + +N + Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAD 355 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T + + + N + + + TT E Sbjct: 356 PTQPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + ++ +A + +V + G Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLAAAAASNTGTATITQGTVTAGYTMPNSTTTLSYDG 475 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSVS 358 + P I + + + + + Sbjct: 476 TGLSGFPAGSTVTVAGTPPTTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISN 535 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + N ++ + + A VTL N + + + Sbjct: 536 APAAGDKFTIGPNTGATNDGRNALALSNLSTAKAMSGGTVTLTGAYANYVNNIGNQTNQI 595 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN+ EE + L++ +Q Y ++K+I + QT+L Sbjct: 596 QTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILGI 655 >gi|17548566|ref|NP_521906.1| flagellar hook protein FlgE [Ralstonia solanacearum GMI1000] gi|17430814|emb|CAD17496.1| probable flagellar hook protein flge [Ralstonia solanacearum GMI1000] Length = 401 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 51/473 (10%), Positives = 105/473 (22%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + R Q ++ ++ T N A+ Sbjct: 87 TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYGVDATGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D T T N Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAAGTVPTTTPFSATNSATFNHSVSEQVYD 194 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + V Sbjct: 195 GT-------------------------GTSHMLTNYYVRTAAGWDVYSQVDGANPTGGNP 229 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + L + + + QY + Sbjct: 230 VTSLTFNSSGVLTSSPSKVAVAFAGMSIANMDFTGTTQYGGGFNDTTVSQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + L N W+E S + + Sbjct: 290 YSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGAPQMGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D +LQTL+ Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSM 400 >gi|163850123|ref|YP_001638166.1| flagellar hook protein FlgE [Methylobacterium extorquens PA1] gi|163661728|gb|ABY29095.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 403 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 54/480 (11%), Positives = 126/480 (26%), Gaps = 77/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ V + N S + +++ NI+NA Y R + + N Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L S + + ++ + S Sbjct: 59 GAVETTLRRSVSE------------------GGPIASTNSDKDLAIQGNGFFVVSDAAGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + N + + A+ ++ + V Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + V + IG + +++ V R + + Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + F D +++ G+ + S + N Sbjct: 209 MTKTAANTWSVEFFDPAAPTTSLGTTNVTFDGNGKVNGGGSALVNVPN------------ 256 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + I + Q + + L + S Sbjct: 257 ------------------------------GRSIPVDLGGLTQLSGDHN-LSGTANGSSP 285 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y D K P+A + + L A N S Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q + V++ EL+ +I+ + Y ++K+ M +++L+TL+ + Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403 >gi|158422271|ref|YP_001523563.1| flagellar hook protein FlgE [Azorhizobium caulinodans ORS 571] gi|158329160|dbj|BAF86645.1| flagellar basal body FlaE protein [Azorhizobium caulinodans ORS 571] Length = 430 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 51/482 (10%), Positives = 108/482 (22%), Gaps = 54/482 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N S + +I NI N++ Y + T + + + S + Sbjct: 1 MSLYGTLRTSVSGMNAQSNKLGTISDNIANSNTTGYKKATTDFSSLIVDSSTSEYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNL 118 N + + S T S D+ N Sbjct: 61 NTKISYDISKQGTTTSSTSATDMMVNGDGFFVVQDGGGSTYLTRAGSFTVDATTGNLVNT 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + L I V N++A I S N Sbjct: 121 AGYTLMGYDISKGNNVTPVVNSTAG-------MVPVNIGSIALAAVPTTSGTMTANLQST 173 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 S + +++ + + L + Sbjct: 174 SAVVSGATPGG-------------NTAAATYTYKSSVSVYDNLGNQVVLDVYFTKTAAAN 220 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + T + ++ + P L Sbjct: 221 PAATPPTTGGWEMAIYNQADATTGGTTPFPYSS-----------------------SALA 257 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 D G + N ++ + S Sbjct: 258 TQTLTFDSTGQLLTPATGKVSLTVPNGQTMNFDISTMTQLS-------NDYSIKAPTNGS 310 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + N PVA + + L + N + S + Sbjct: 311 PATSASDIKVNSQGIVYAVDGNGNTTNLYRIPVATVKSPDNLTPVSGN--AYQVTQESGA 368 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I + V++ EL+ +I ++ Y ++K+ +L L+ Sbjct: 369 MQIGLSGSAGVGTIKSNTLENSNVDVASELTDMIVAQRDYTANSKVFQTGTDLLDVLMNL 428 Query: 479 VK 480 + Sbjct: 429 KR 430 >gi|292487939|ref|YP_003530814.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292899158|ref|YP_003538527.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291199006|emb|CBJ46117.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291553361|emb|CBA20406.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312172060|emb|CBX80317.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 402 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + + N+ Sbjct: 62 NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ N A Sbjct: 116 LTGYPATGTPPAVQT----------------------------------GANPVALSVPA 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A ++ + + N+ T F+++ Sbjct: 142 TAMTAKATTTAAITANLNSTDAVKNYANLNINDTTTYNAKSSMTTFDSLGNAHTVNLYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +D ++ + + L+ + V QL Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNANGQLVTPNNGQVSFTMGQL------------ 249 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N Q +F K Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + L+ Y + + ++ L N W S Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQLLGQIVLSNFANPEGLKSEGDNV--WSSTAASGQALSG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >gi|116694219|ref|YP_728430.1| flagellar hook protein FlgE [Ralstonia eutropha H16] gi|113528718|emb|CAJ95065.1| flagellar hook protein [Ralstonia eutropha H16] Length = 408 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/473 (9%), Positives = 99/473 (20%), Gaps = 66/473 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N A+ I NI NA+ Y + + N + Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNS--VVQ 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + L + + + + N+ + Sbjct: 60 SFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQVTG 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 A + + +K Sbjct: 120 YPAGVAGGAGVQPQ-------------------------PLVISNAQMEPRATSNITAKF 154 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + S + + + VY S G + Sbjct: 155 QLDSRATVPTQAFASAAGSPPTSNMFNYSTAINVYDSLGNKQQLMAYFAKSAGAPTVAGG 214 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + + AL + + Q Sbjct: 215 TDWRMYVTDVNGNAVGGAPVTLAFDNAGALQSPAAGAITLSQ------------------ 256 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + Q+ ++ + + Sbjct: 257 ------------------PAANGAQAMAMKLDLTGTTQFGADNDVKQLSQNGYTSGSLLG 298 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ G + +Y + K +A L N W S + + Sbjct: 299 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNV--WSATGASGQALVGVAG 356 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +L LI +++Y + + I D ++QTL+ Sbjct: 357 -GSMGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 408 >gi|254559268|ref|YP_003066363.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] gi|254266546|emb|CAX22310.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] Length = 403 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 54/480 (11%), Positives = 127/480 (26%), Gaps = 77/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ V + N S + +++ NI+NA Y R + + N Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L S + + ++ + S Sbjct: 59 GAVETTLRRSVSE------------------GGPIASTNSDKDLAIQGNGFFVVSDAAGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + N + + A+ ++ + V Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + V + IG + +++ V R + + Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + F D +++ G+ + S + N Sbjct: 209 MTKTAANTWSVEFFDPAAPTTSLGTTNVTFDGNGKVNNGGSALVDVPN------------ 256 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + I+ + Q + + L + S Sbjct: 257 ------------------------------GRRITVDLGGLTQLSGDHN-LSGTANGSSP 285 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y D K P+A + + L A N S Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q + V++ EL+ +I+ + Y ++K+ M +++L+TL+ + Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403 >gi|21672604|ref|NP_660671.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008456|sp|Q8K9K6|FLGE_BUCAP RecName: Full=Flagellar hook protein flgE gi|21623235|gb|AAM67882.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 409 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 54/487 (11%), Positives = 118/487 (24%), Gaps = 86/487 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------TV 52 MS++ N + + NI NA + + + Sbjct: 1 MSIIETIN----GLMINNDYIDIVSNNIANASTIGFKSSTPSFFDIVSHSFYSNQIIKSG 56 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V + +N D VL + + + F + + Sbjct: 57 VGISNLVQNFSDGVLVQTNRDLDLGIVQDGFFRVLD------SKGYVYYTRNGHFLLDKN 110 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N L + N + K L + + + Sbjct: 111 KNIVNGQGMYLT------GQNQFDLKNNLNSISNLEPINLRKSDLLSAKATSQIKLKADL 164 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +ND + + + SEI I+ +N N + S Sbjct: 165 INDFSSTNSITGKND----------DISNSEIHDITIYDKNENPHKLNISFNQIDDHQWK 214 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +I Q+ D +P + D Sbjct: 215 LNI-----------------------------------------QLNDEKIPDNEIINDN 233 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + ++ I L+ L + ++ P + + Sbjct: 234 FILKFDSEGNLISNSSLQIKSKNSKNIILDPITLN--LECFLEKSETNMPSIELSQNGYT 291 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G + L N + + Y + +P + ++ W Sbjct: 292 KGFLKHFEILNNGEIIGQYTNEEEQKIGQIFLAKFINPEKLKPESGSI---------WSA 342 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + F + + + V+L +EL +I +++Y S + D+++ Sbjct: 343 THESGQEKIGAAGDQGFGSLYTKFLESSNVDLNKELINMIIAQRNYQSSAQAFKTEDRII 402 Query: 473 QTLLEGV 479 TL+ Sbjct: 403 NTLVNLK 409 >gi|91785627|ref|YP_560833.1| flagellar hook-associated protein FlgK [Burkholderia xenovorans LB400] gi|91689581|gb|ABE32781.1| Flagellar hook-associated protein [Burkholderia xenovorans LB400] Length = 657 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52 + + N + N A + +NI NA Y + S V+ Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + L+ S+ + + + I+ L+ Sbjct: 61 TTVTRQYSQYLTTELNNAQSSSSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S N S +T + A+ +V N + ++ +R + ++ +S + + ++ Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYSQQIAQ 178 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I + + LDQRD+ + +S++IG++ + +N V+ S+G L + Sbjct: 179 LNGQIAQASTQGQPPNQLLDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSTN 237 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 ++ + + S + G + LL R + + Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAATPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL +A + ++ + G + Q + Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFADAT 357 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 D + + + + + + S N + G Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAG 408 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/360 (9%), Positives = 87/360 (24%), Gaps = 1/360 (0%) Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + V N + + A + + +N + Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAD 355 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T + + + N + + + TT E Sbjct: 356 ATQPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + ++ +A + +V + G Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLAAAAASNTGTATITQGTVTAGYTMPNSTTTLSYDG 475 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSVS 358 + P I + + + + + Sbjct: 476 TGLSGFPAGSTVTVAGTPPTTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISN 535 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + N ++ + + A VTL N + + + Sbjct: 536 APAAGDKFTIGPNTGATNDGRNALALSNLSTAKAMSGGTVTLTGAYANYVNNIGNQTNQI 595 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+ + + GVN+ EE + L++ +Q Y ++K+I + QT+L Sbjct: 596 QTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILGI 655 >gi|240145497|ref|ZP_04744098.1| flagellar basal body and hook protein [Roseburia intestinalis L1-82] gi|257202312|gb|EEV00597.1| flagellar basal body and hook protein [Roseburia intestinalis L1-82] Length = 551 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/553 (7%), Positives = 112/553 (20%), Gaps = 77/553 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ A + + I NI N + + + Sbjct: 1 MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103 V + S A + ++ + + Sbjct: 61 TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + ++ ++ + Sbjct: 121 AGSFYVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQA 179 Query: 164 RR----------------------------------------------FLSELTVVNDAI 177 + ++N Sbjct: 180 NVSGIIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDG 239 Query: 178 KFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + D D + L S++ +N V + T Sbjct: 240 TTFYDPETSKVDLSDIFGAKTTNATLGTYSQVQSGYYYDSASNKFYVGSDANGTEISWNQ 299 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 +F + T ++ + S + I V + Sbjct: 300 ATNSFTDGKNPATTYSLKQVYGIPDAMVSKIANKQATAAIANGTLTISGDVTDYAIDFST 359 Query: 293 MARVLI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 S ++ + + N + +D + + + Sbjct: 360 KDGTFTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTG 419 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 G K ++ + Y + + VA L + N Sbjct: 420 SIDDGVTGKGKKLGAMIGISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENC 479 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 N + + + + ++ V+L E + +I ++ + ++++I Sbjct: 480 YRTT-LNSGEFDGIGDEISADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITT 538 Query: 468 TDKMLQTLLEGVK 480 +D +L+ L+ + Sbjct: 539 SDTLLEELVNLKR 551 >gi|154250212|ref|YP_001411037.1| hypothetical protein Fnod_1537 [Fervidobacterium nodosum Rt17-B1] gi|154154148|gb|ABS61380.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 770 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 98/347 (28%), Gaps = 5/347 (1%) Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTV-VNDAIKFKTASKHDAHDFLDQRD 195 +F + + IR D I L+ + D S D + D Sbjct: 426 SFEYTQGKYGVIRTVRDSVSGNVIGTYNVLLTNGANTIYDDNFISGNSYIDEIYQPSKVD 485 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 ++ + N VV T D Y + ++ + Sbjct: 486 MITIPGAGEPRFYEADNPTNFSVVSFKSPFYTTSTQVYDSLGNPYTLYIDFVKLASVYGN 545 Query: 256 GVVVSSNQGSAVPKGKIKAL--LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 + + + IK L + L + + DP G Sbjct: 546 HENAWAFRIRSASGENIKYLSNYDTATEITGGTCGVLRFDKTGRLLGVNSFDPSTGRISE 605 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + + I + Q+ + + + + +++ D Sbjct: 606 GENVDAILFNAGENGDGIVKIKLDLNSMTQFAALADAFVKNQDGNAQGVLESFSISENGD 665 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 +I + + +A N LLE + G E S + + S+ F + Sbjct: 666 IIGSFTNGLVDVLGKVALATFNNPAGLLELGNSLYG--ESANSGTARIGQPSKGGFGSLV 723 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + LI ++ + + + I D++LQ ++ + Sbjct: 724 AGALEMSNVDLSEEFTKLIIAQRGFQANARTITTADQILQEVVNLRR 770 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/453 (6%), Positives = 98/453 (21%), Gaps = 21/453 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + Q+ + NI N + + + + +++R+ + Sbjct: 1 MMRSLYSGVSGLQGFQQEIDVVSNNISNVNTIGFKGARVTYATNFSQILDMSRRATDNTG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + E + Sbjct: 61 GTNPKQIGYGIRVASIDKIMNQGSFQNTGKKTDLAIQGEGFFILSNGQRQFFTRAGNFDL 120 Query: 110 SLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L + L V + + + + + + I+ + + + + Sbjct: 121 DLNGTIVQPTTGLKLQGWVAEVDPMSGRRYVDTNKPISNIQISSGLSMAAKQTTRMTMAG 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L KF A ++ + + + + + + D Sbjct: 181 NLDARVGPEKFVIAINGYGGRTINTKVSFERDFGALQDTFSDYQVYLGKIDANLDDKVDG 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + F + + + G ++ G +++ + + + Sbjct: 241 KVYIKFDKFGNVVNAGAIKQKLSGTASGGALTLTNPIQQQDGNYLFIIRDSNGKIVDTLS 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + V SEK + + + SN Sbjct: 301 RNVLNGSVTEAITSEKLVDGQTYSVEIAAST---QEVVPLDMQFDYQTVASTANGQLSNN 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 ++ + D+ V + + + + Sbjct: 358 FTVQYVVENLDGTPVAIAPQNITSSGTQSISDAALTPGTQYRVKVMING----KVFGSEV 413 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + ++ +Q + I + G Sbjct: 414 VTATTDGANGRISFEYTQGKYGVIRTVRDSVSG 446 >gi|327478809|gb|AEA82119.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 396 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/474 (10%), Positives = 112/474 (23%), Gaps = 79/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + ++Q +I NI N+ + T + + Sbjct: 2 SFNIALTGLSAVNEQLNTIGNNIANSGTVGFKSSRTNFGSLYAETQAMGVEVIG---TTQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + R L + + +SY N Sbjct: 59 SISQGGALTSTNRTLDLAISGGGFFVTRASNGDVGYTRAGIFGTDKDSYITN-------- 110 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + +Q ADA + + A Sbjct: 111 --------------SLGQRLQGYPADATG---------NLQTGTVGDLQLRSGGIPARAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 DA F+ D + + ++ T L+++ ++ + T Sbjct: 148 DALSFVANLDANQEVP------TVAFDPQAADSYNSTYTTKLYDSQGKEHTLTQYFVKTG 201 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + N + + A+ L Sbjct: 202 DNSWNAHYYVDGTALAGAPQALTFDSAGVLAA---------------------------- 233 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P +A I QY S S + + Sbjct: 234 ---------PIGSVALAAPLTGGVAPLAIQLDYSGTSQYGSEFSVTNNRATGYAAGEQTG 284 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + +A L + W E S + L Sbjct: 285 MSVEKDGKVYATYSNGERMLQGQVVLASFVNAEGLKNI--SGTAWTETAASGAAMLGAPG 342 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ + V+L ++L L++ +++Y + ++I ++ Q L + Sbjct: 343 VGQYGTLASGALESSNVDLTQQLVGLMEGQRNYQANTQVISTNKELTQVLFNAI 396 >gi|331646334|ref|ZP_08347437.1| flagellar hook protein FlgE [Escherichia coli M605] gi|330910890|gb|EGH39400.1| flagellar hook protein FlgE [Escherichia coli AA86] gi|331045086|gb|EGI17213.1| flagellar hook protein FlgE [Escherichia coli M605] Length = 401 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + +N N + KT + Sbjct: 97 NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L+ D L + +N T+F++ + T Sbjct: 153 SMQLNLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + L A ++ S + Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|187924404|ref|YP_001896046.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] gi|187715598|gb|ACD16822.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] Length = 410 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/473 (8%), Positives = 111/473 (23%), Gaps = 64/473 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + + + AS I NI NA+ + + Sbjct: 2 SYQTGLSGLSAASTDLDVIGNNIANANTVGFKSSTAQFA---------------DMYANA 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 V+ A ++ +G + ++ S I+ + S N + Sbjct: 47 VMTAANNQVG---IGTRLSTAEQDFSNGTFSKTDRPLDIAINGNGFFQLSNNGALVYSRN 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + +A+ + + + ++ ++ + + ++ Sbjct: 104 GVFHLDKS---GVIENAQGLPLMGYSPGPDGKMNTGSVGPLMVSSASLPPTATKTISAAF 160 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + S+ + ++ +++ ++ + Sbjct: 161 NLD-------------SQDPVPTNPFNPSDPASYSYGQPMSVYNSLGGSQSTNVYFVKKA 207 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T + G + P G + + + Sbjct: 208 TGSYDVYGTSGNPPA--PVGPNPSGSMGTITFDTSGHLTS-------------------- 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N L + Q ++ + QY + Sbjct: 246 ------PNASALTFNIPNAADNGATTQSLTLNLTGTTQYAGKNGVTALLPDGNSSGQLTG 299 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ L Y + +A + L N S + + Sbjct: 300 FSVGEDGTLTGSYSNGATLVLGQVALATFSNPNGLANMGNNLYAQTG--DSGAAQVSSPG 357 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +L LI +++Y +++ I + Q L+ Sbjct: 358 STNHGVLLGGQTEDSNVDLTHQLVDLITAQRNYQANSQTIKTQQTVDQALINL 410 >gi|87119676|ref|ZP_01075573.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] gi|86165152|gb|EAQ66420.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] Length = 565 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 60/568 (10%), Positives = 128/568 (22%), Gaps = 100/568 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPENVT 51 FN A + ++ + NI N+D + + V+ Sbjct: 2 GFNTALSGIKASADALSVTGDNIANSDTTGFKQSRIEFGDLYNTSVVGAGSNNTIGSGVS 61 Query: 52 VVTQRSENK----NMFDKVLHAH-----------SSAIGQQRLLQSFEALKEMMSADDHY 96 V D L R + +D Sbjct: 62 VNNIAQAFSAGNIAYTDNNLDLAVDGTGFFVLNLGGTQAYTRAGDFKLDADGFLVTNDGA 121 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 N + + + + ++ I + D + + + S I D D Sbjct: 122 NVEGYNAVDGIVGGNLENLQVPTDRIAPQATSDI-QLQINLDSESNDVPPFIEEDFDPND 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHD------AHDFLDQRDVLLQKISEIIGISTI 210 + N+ I +K D H +D + I Sbjct: 181 PETYDFTQTQAVADAAGNNHIVTYYYAKSDLPNTYQVHASVDGAATDDTGAAWIPEQYVT 240 Query: 211 VRNNNDMVVYTSDGTT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 + + DG L + T + ++GV ++ Sbjct: 241 FNGPEEGKDFNLDGIPEDPFQLLYMGAAKPTTAGVTGLVQTPIAVTGTLNGVAITDTMQG 300 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-- 323 A I + D P + L + E+ + + + Sbjct: 301 ANVVSPISVAREAFDPSDPATYT--YGNTKTLYDALGEEHTLGYYFIKQGENNTFEMVVT 358 Query: 324 --------KDLDNKLCQGISETICVNPQYRSNPSFLRD---------------------- 353 + ++ I + + V N S + Sbjct: 359 VDGKTEYEDPITGEMTSYIPDDVVVTFDTAGNISSVAQGFPPFAVTQPITLEIKGFDPTN 418 Query: 354 -----------------------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 LI Y + Sbjct: 419 REAVIPIDMNGSTQFALSSSDVFMQDGFTAGELQGVMFDEDGFLIATYTNQQTSVLGQIA 478 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A + L W+ + S ++ + + + V+L EL Sbjct: 479 LATFDNTDGLTP--SGDTSWVASSDSGQANVGKPNTGTLGSVQGAALEESNVDLTSELVA 536 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI+ +++Y ++K + + + QT++ Sbjct: 537 LIEAQRNYQANSKTLETENTVTQTIINL 564 >gi|242308880|ref|ZP_04808035.1| flagellar hook-protein FlgK [Helicobacter pullorum MIT 98-5489] gi|239524544|gb|EEQ64410.1| flagellar hook-protein FlgK [Helicobacter pullorum MIT 98-5489] Length = 609 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 49/457 (10%), Positives = 121/457 (26%), Gaps = 35/457 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50 LL+ N ++ NI NA+N+ Y R+ + + + Sbjct: 3 GLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYTRQVVRSAAQTPLLVSSNYAIGQGL 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +T + S S + + + ++ Sbjct: 63 DTLTVERVHDEFTFSRYKKASMEKTYYDTSFSGLKEASSYY-PEVDGVGIYNDLQNYFNA 121 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + S + + + A + N + + + ++ + E+++ + + R ++ Sbjct: 122 WKDLSTKAGDSAQKIALAEQASTLANNISATRERLVNLQQRLNDELKVAVDEVNRLGEQI 181 Query: 171 TVVNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRN------------NND 216 +N I A+D D RD +I+ +IG + + Sbjct: 182 AQINKKIAEYENQQLNQKANDLRDLRDQYEFEINNLIGCDVFKEGLKGSACVDENIADFE 241 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + G NS + + ++ N +++ GK+ A+L Sbjct: 242 EGYTLTIGGKSIVDGTSFHPLTLDNSQNESGIYSIKYLRSDHKEFNLTNSLSDGKVGAIL 301 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + N +V I + N + D Sbjct: 302 DLIRTEDVLTCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLEARSDALNINIQDA 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + + ++ N+ G ++ + N D N Sbjct: 362 LTTSGYNINNGSFKVVMYNKQGEEIGTRTVNIDGLTNMQSILDQL---NANVDGNGDANA 418 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + +D+ + S+ I Sbjct: 419 SNDFDDRF------VATFNNDTKTFAITSKNPAEEIY 449 Score = 90.5 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 62/192 (32%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 N ++ + +F+ + P I I+D + SN Sbjct: 417 NASNDFDDRFVATFNNDTKTFAITSKNPAEEIYISIQDNGTNFAGAFGVNRFFDGNDASN 476 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + G ++ N F G N T+ Y R Sbjct: 477 IQLAQSYKNDPTLIHAYREAVDGNFEVANMMQQLQYDKITFTDSEGNIQNETISGYFRFI 536 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + V+ I + Y V++ +EL LIK + Y+ + K++ Sbjct: 537 ASKVASQTESTQITQETKEAVYVSIKQEYKAISEVSVDDELVNLIKYQSGYSANAKMVST 596 Query: 468 TDKMLQTLLEGV 479 D+ML TLL Sbjct: 597 IDEMLNTLLGIK 608 >gi|78062976|ref|YP_372884.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77970861|gb|ABB12240.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 414 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 53/469 (11%), Positives = 99/469 (21%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + A+ I NI NA+ + + N Sbjct: 6 GLSGLAGAANHLDVIGNNIANANTVGFKQGRANFADMYANSV------------------ 47 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 +S Q + ++++ + + I+ + S N V Sbjct: 48 ATSTNTQIGIGTRLVSVQQQFGQGTINSTKSSLDIAINGNGFFQMSNNGVTTYSRDGVFH 107 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N Sbjct: 108 RDKSGA-------------------------------IVDAQNRNLMGYAAGPGGAINTA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 IS + N + + VP F ++ T S Sbjct: 137 ATVPLQAPTSNISPQATTKITGQFNLNS----------QDKVPAKTPFNAGDNTTYNYNS 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + + K N S G Sbjct: 187 SIQVYDSLGGAQQVSMYFTKNAAGTWQAYAGVQGQTPTNLGTVTFDASGRISSTTSAATG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + Q+ ++ Sbjct: 247 QPTPSLGQFAFSIPNASGGANPQNLTLDLGGTTQFGGKSGVNNLAQDGFASGTLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 L +Y + + +A N L N ++E S + Sbjct: 307 TDGKLTGNYSNGQSAVLGLIALANFNNPNGLENIGGNQ--YVETAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L EL LIK ++ Y + + I + QTLL Sbjct: 365 GTLQGSALENSNVDLTTELVNLIKAQRDYQANAQTIKTQQTVDQTLLNM 413 >gi|281411901|ref|YP_003345980.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] gi|281373004|gb|ADA66566.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] Length = 755 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 48/451 (10%), Positives = 120/451 (26%), Gaps = 24/451 (5%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 Y DT + N ++ + + + ++ S + + D Sbjct: 323 YSADDTRNVTASSNGSISDTTTLSDGTYQAIVLDSSGNVVYNGTTTVSSGSFTISDPDIV 382 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 N+ T +S D+ + +S + + N + + Sbjct: 383 SGNNYTVILSSNSDAQTITAIGISGTTTLSDGTYQTIVLDSSGNVVYNGTTTVSGGSFTI 442 Query: 156 IELEISNLRRFLSELTVVND---AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI-- 210 + +I+ + L N+ ++ ++ + R + + Sbjct: 443 NDSDITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSP 502 Query: 211 -VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + T++ R N + + + D S Sbjct: 503 RYTTAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGS 562 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G + L+ +S PI LD + G AG Sbjct: 563 GYVAGLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGD 606 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 I+ Q+ + + + + + ++I + + Sbjct: 607 GVVTITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQI 666 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A N L E + ++ S + + V+L EE + Sbjct: 667 ALAVFNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFT 724 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I ++ + + ++I D++L L+ + Sbjct: 725 KMIVAQRGFQANARVITTADQILNELVNIKR 755 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 34/433 (7%), Positives = 103/433 (23%), Gaps = 14/433 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + NI N + + + Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGR------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q L ++ ++M+ N ++ D S S Sbjct: 54 -SSQENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ +VQ A D E + + + +L + Sbjct: 113 TRAGAFTLDSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNKPIGDLVISAGMTMPAKK 172 Query: 183 SKHDAHDFLDQR----DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + + +++ GI+ VR + + + + Sbjct: 173 TSNVRFEGNLNSKLGPGSFVITLTDENGINHDVRVWFEKTQSDLGTDPFSSSQRYTMKID 232 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 N T + +F + V A + + ++ + + + Sbjct: 233 IDNDGTADVDGYMVFNEFGRVEEAGVYAESQTMTAIGISGTTTLSDGTYQTIVLDSSGNV 292 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 +G+ ++ + + S+ + L DG + Sbjct: 293 VYNGTTTVSSGSFTISDPDIVSGNNYTVILYSADDTRNVTASSNGSISDTTTLSDGTYQA 352 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + ++ + + I + + +I + + + + Sbjct: 353 IVLDSSGNVVYNGTTTVSSGSFTISDPDIVSGNNYTVILSSNSD--AQTITAIGISGTTT 410 Query: 419 HDLHMKSQVVFNH 431 +V + Sbjct: 411 LSDGTYQTIVLDS 423 >gi|144900942|emb|CAM77806.1| flagellar hook protein FlgE precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 430 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 53/480 (11%), Positives = 120/480 (25%), Gaps = 50/480 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ N A S + I N+ N+ Y T Sbjct: 1 MSLMGAMNSAVTALKAQSTALSIISDNLSNSSTTGYKANTTSFKT--------------- 45 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + S A G + + + + + + Sbjct: 46 -LVTQSYSSTSYASGGVTASVRQNVAAQGVISGTSNSTDLALDGDGFFVVSYGATGEETF 104 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ + N +Q D+ + I Sbjct: 105 FTRDGEFEIDSAGFMCLGNY---YLQGWETDSSGNV--------------------IAGS 141 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T S R + + I + + + +F+ + Sbjct: 142 TNSSSTLSAVNVNRFTGTAEATSAETIQANLPADAATGDVVTATMEVFDALGVSHTVTMS 201 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 T +E D V+ S + L D + + + + Sbjct: 202 YEKTAANEWELSLSDPVLSSDTATDSGDITGGPFTLTFADGALTSITD------AGGVAT 255 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 E ++ IA + + + + + S G + Sbjct: 256 ELEFSITGFSTGASDIATIAIDVGQGTSGTGSLTQFSSNSDDP---DISITSITGDGVEY 312 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + + H+ + + VA L + + + S Sbjct: 313 GALSSVEVDKKGVIWAHFDNGQDIAIYKLAVADFTNANGLENQGYGV--YQQTSASGDFT 370 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LH + I+ S + V+ +E + +I +Q+Y+ ++++I M L+ V+ Sbjct: 371 LHEAGEDGVATITPSALESSTVDTSDEFTRMIVAQQAYSAASQVISTASDMFDDLMAAVR 430 >gi|254248705|ref|ZP_04942025.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124875206|gb|EAY65196.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] Length = 414 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + L Sbjct: 66 QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + L+ + + K Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTSNIAPRATSRITGQFNLNAQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D + I + + + + +Y + G + Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKGAAGTWQAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + G++ + Q Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY Sbjct: 256 ------------AFSIPSTTGGANPQNLTLDLGGTTQYGGKDGVSNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQVSAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S VNL EL LI +++Y + + I + Q LL Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQALLNL 413 >gi|304397204|ref|ZP_07379083.1| fagellar hook-basal body protein [Pantoea sp. aB] gi|304355353|gb|EFM19721.1| fagellar hook-basal body protein [Pantoea sp. aB] Length = 418 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/476 (9%), Positives = 111/476 (23%), Gaps = 63/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + AS I NI N+ + V + +N Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + +L N Sbjct: 62 NDGATTTTSRGLDVALSGNGFFRMTD------SSGGVFYSRNGQLTLDANRNLVNTQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +Q Sbjct: 116 VTGYPASGSPATIQ---------------------------------------------- 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + + G+ + + + + T ++ + +S Sbjct: 130 AGANPVALRIPTEQMPARATTTAGLVANLNSTDTTPSVPTFSTANADSYNKKTTATVFDS 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + F +S + + R + + Sbjct: 190 QGNDHALDMYFAKDTASNSWTVRTIDANTGLSAGDFR------MAFDTSGKLTSVSKLNA 243 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + ++ GL + G + + Q +F Sbjct: 244 NGTVASTTTDGTVGLTLNVGGANGAVANQPITMSMLGSLQQNTGATNFGSPTQDGYAPGD 303 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + ++ + L N W + S + Sbjct: 304 LTSYAINNDGTITGSYSNQKTQLLGQIVLSSFSNPEGLQSKGDNV--WQASSASGQAAIG 361 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F ++ + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 362 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 417 >gi|161777623|ref|YP_427619.2| flagellar hook protein FlgE [Rhodospirillum rubrum ATCC 11170] Length = 460 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 53/487 (10%), Positives = 123/487 (25%), Gaps = 37/487 (7%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ------ 55 SL + N A + N S ++I N+ N+ Y + + Sbjct: 3 SLSSSLNVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGV 62 Query: 56 --RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + V+ + + + + +++ Y + + Sbjct: 63 VASATQNVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELY----YTRAGDFYPNADG 118 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 N + L D + N S ++ I S + Sbjct: 119 DLVNSNNYYLQGYPTDRNGVPLTNTGNSGASLETINLAGATGAAKATSEMSIQAVLPAQA 178 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 D ++ + + ++ + D Sbjct: 179 TAGDSTAVPPVAAYTSSSDVEIYDSLGVAHTMTVKWTKMSDTKWTMTLYDPK-------- 230 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + T + V +N G I ++ D + + L Sbjct: 231 ---LSSDMTGDATGAISSTTTGVTDVPANAGPPATSHGIAVDVEFTDQGLLKTPSVL--- 284 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + P A N IA + + + + + Sbjct: 285 -------ALKITPDASNGTGAAISEIALNLGTAGKANGLSTYSNEDSDGKPAVDLKKVVQ 337 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + N + AG + ++ + + P+A + L + + Sbjct: 338 DGVTYGTYYSNTISKAGL--VYANFTNGISYPIYQVPLAMFSNVNGLEAV--SGTAYSAT 393 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +S + +S + V+ E S LI +Q+Y+ + ++I +M Q Sbjct: 394 VKSGTPTYVTAGTGGSGGVSSGSVESSTVDTAAEFSKLIVSQQAYSAATQIISSNQEMFQ 453 Query: 474 TLLEGVK 480 L+ + Sbjct: 454 NLISAKR 460 >gi|291617020|ref|YP_003519762.1| FlgE [Pantoea ananatis LMG 20103] gi|291152050|gb|ADD76634.1| FlgE [Pantoea ananatis LMG 20103] Length = 415 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 66/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + AS I NI N+ + V + +N Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F L A + N Sbjct: 62 NDGSTTTTSRGLDVALSGNGFFRLTNSAGAVS------YSRNGQFTLDQNRNLVNTQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + Sbjct: 116 VTGYPASG----------------------------------------------VPPTIQ 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + + + + + + T T T ++ Sbjct: 130 SGANPVAIKIPTTQMPANATTTANQVAKLNSTSAALDDTKFSATDPTTYSAKNTITMYDT 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + F+ + KI + S V +Q + ++ S Sbjct: 190 QGNSHSLDLYFVKTADNT---------WKIHGIDSTAGSNVGNYQMSYNANGQLTGVSSL 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q +F + Sbjct: 241 DATGNVVAGSTTASTATVTIPGVNGANGTTVALNFVGSLQQNTGATTFGNATQNGYAPGD 300 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A + L N W E N S + Sbjct: 301 LTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNV--WAETNASGQAAVG 358 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F ++ + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 359 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 414 >gi|170751912|ref|YP_001758172.1| flagellar hook-associated protein FlgK [Methylobacterium radiotolerans JCM 2831] gi|170658434|gb|ACB27489.1| flagellar hook-associated protein FlgK [Methylobacterium radiotolerans JCM 2831] Length = 627 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 130/431 (30%), Gaps = 19/431 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57 MSL + + + +N+ NA YV+R T + V + Sbjct: 1 MSL-NAISTSAAGLAATQAAINIVSQNVANAGTAGYVKRTLSTVANGPNNSGVAIGQITR 59 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 L +S + + + S ++ +SL+ + N Sbjct: 60 SFDAAALNQLRLETSGAAYTSTKSGIATQLDALYGVPGSSTSLDGTLNTFTESLQELAAN 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + TV+ NA V N++A VQ +R + ++ + S LS + +N I Sbjct: 120 PTSAAARTTVLGNASAVASLINSAAGTVQNLRTGLEAQLGTDTSAASTILSNIATLNGKI 179 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI-- 235 + T S D DQRD + +S + + T+ + + + V T G TL + Sbjct: 180 QNTTDS-TALTDLQDQRDQAINSLSSYMDVQTVPQRDGTVSVMTQSGVTLVDRGNAATLS 238 Query: 236 -----------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + + G + + G + A +++RD +P Sbjct: 239 FDGRGVLGPNATYSTDPAQRTVGTITATLPGGGKIDLGAPGVLRSGSLAAEIEMRDQTLP 298 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 Q QLD++A L + + S + ++ + N Sbjct: 299 QAQRQLDDLAAGLSTALTNTATTGTYSGTDTQISVSTMKPGNTITFPVTDNTGAVRNVTL 358 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ + ++ + L + F+ + L + Sbjct: 359 VASATSSGTIVPAAQTTDSSGLTLTFNASGGPSTYAA-AIQSAFNTFNASGSAYKLPTLS 417 Query: 405 RNSIGWLEKNR 415 + + Sbjct: 418 ATPVSSTGTSA 428 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 49/411 (11%), Positives = 113/411 (27%), Gaps = 16/411 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 S + D + + + +YS + ++ +G + Sbjct: 219 SVMTQSGVTLVDRGNAATLSFDGRGVLGPNATYSTDPAQRTVGTITATLPGGGKIDLGAP 278 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 A + + + +R L +L TA+ Q V K Sbjct: 279 GVLRSGSLAAEIEMRDQTLPQAQRQLDDLAAGLSTALTNTATTGTYSGTDTQISVSTMKP 338 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 I V T T+ + T+T ++ ++ Sbjct: 339 GNTITFPVTDNTGAVRNVTLVASATSSGTIVPAAQTTDSSGLTLTFNASGG--PSTYAAA 396 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 Q + + ++ + L + + + V + Sbjct: 397 IQSAFNTFNASGSAYKLPTLSATPVSSTGTSATLTLGAAGKVAGAASASVSAVSASDLNT 456 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G L + ++ + S + +V+ N L + Sbjct: 457 GNPSLAMFVDGSGNKLYTGSFDGGSQLTGFAQRITVNGALSGNTAALTATSATDTSASGA 516 Query: 382 FNKNFIFDPVAGINT--------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + A T + +++ +A++ + N S++ L Q Sbjct: 517 RAQKLFTALTATPQTFSSSSGIGGVSAPYSTSVIGFAQDIVSTQGANASNASALDATQQT 576 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + +S GVN+ +E+S LI ++ +Y + +++ ML LL+ Sbjct: 577 ALSTAQSRFSAGAGVNIDQEMSNLIALQTAYGANARVLTAARDMLTQLLQI 627 >gi|83747654|ref|ZP_00944690.1| FlgE [Ralstonia solanacearum UW551] gi|207728346|ref|YP_002256740.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|207739737|ref|YP_002258130.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] gi|83725706|gb|EAP72848.1| FlgE [Ralstonia solanacearum UW551] gi|206591592|emb|CAQ57204.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|206593119|emb|CAQ60025.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] Length = 401 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 59/473 (12%), Positives = 113/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + R Q ++ ++ T N A+ Sbjct: 87 TGFYRMVDTSSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D TVP F NS T Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFTINLDAA----------GTVPTTTPFSATNSATY 184 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + DG S + + + Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTAAGWDVYSTVDGAAPTGGNPV-------------- 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + L + + S QY + Sbjct: 231 -TSLTFNSSGVLTSSPSKVAVAFTGMSIASMDFTGTTQYGGGFNDTSVTQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + L N W+E S S + Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D++LQTL+ Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400 >gi|255521665|ref|ZP_05388902.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J1-175] Length = 357 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 26/341 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L+QRD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 +++ + L + + N I D +K N Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPND 327 >gi|331672596|ref|ZP_08373385.1| flagellar hook protein FlgE [Escherichia coli TA280] gi|331070239|gb|EGI41605.1| flagellar hook protein FlgE [Escherichia coli TA280] Length = 401 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + +N N + KT + Sbjct: 97 NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L+ D L + +N T+F++ + T Sbjct: 153 SMQINLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + L A ++ S + Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|327393471|dbj|BAK10893.1| flagellar hook protein FlgE [Pantoea ananatis AJ13355] Length = 415 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 66/476 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + AS I NI N+ + V + +N Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F L A + N Sbjct: 62 NDGSTTTTSRGLDVALSGNGFFRLTNSAGAVS------YSRNGQFTLDQNRNLVNTQGLN 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + Sbjct: 116 VTGYPASG----------------------------------------------VPPTIQ 129 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + + + + T T T ++ Sbjct: 130 TGANPVAIKIPTTQMPANATTTANQVAKLNSTSAALDDTKFSATDPTTYSAKNTITMYDT 189 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + F+ + KI + S V +Q + ++ S Sbjct: 190 QGNSHSLDLYFVKTADNT---------WKIHGIDSTAGSNVGNYQMSYNANGQLTGVSSL 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q +F + Sbjct: 241 DATGNVVAGSTTASTATVTIPGVNGANGTTVALNFVGSLQQNTGATTFGNATQNGYAPGD 300 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A + L N W E N S + Sbjct: 301 LTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNV--WAETNASGQAAVG 358 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F ++ + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 359 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 414 >gi|311694361|gb|ADP97234.1| flagellar hook protein FlgE [marine bacterium HP15] Length = 632 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 50/419 (11%), Positives = 114/419 (27%), Gaps = 12/419 (2%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ G L +F + S N SP + +SL+ +++ Sbjct: 222 LSASATTTATFDGTPALDDAFISGASSFSFSLDINGSPLTLDTSNINSLQDLVDSINNSS 281 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + A +V ++ + + ++ ++ TV D Sbjct: 282 ------ETAISASIVTGGGGSDVLRVIHNQGETLDFTFADGNGNGDTGTVEGDVNVTADR 335 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S D + + I ++ + + TT+++++ + Sbjct: 336 SVAGITSTTADNDFEVAFNASPIRVTNQFNPLDQRTYNHATSTTIYDSLGNSHELTQFFV 395 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQNQLDEMARVLIG 299 + N + + V + G R D + + Sbjct: 396 KNPS-PGNGVGVSEWSVYAQIDGEFVGGTDVTPYTARFDQDGALQSIDGDPSGEIVIDDW 454 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + D ++ P + + QY + + Sbjct: 455 IPKDSDGQPNGADGPPAAGEVVVTPIPEPPTTSAFVINLSGTTQYGAAFGVNDQQQNGYT 514 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +++ L Y + ++ +A N L W+E S Sbjct: 515 TGRLSGLDVSDQGVLFARYTNGQSQALGQVALASFNNTNGLSPVGD--TSWVETFESGQP 572 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I S V+L EL LI +++Y + K I +D + QT++ Sbjct: 573 IIGAPDTGTLGSIKASSVEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 631 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 35/369 (9%), Positives = 80/369 (21%), Gaps = 19/369 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFD 64 FN + AS NI NA + + Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKGSKAQFGDLYASGFLSAGTNPIGDGVRV 61 Query: 65 KVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + I + ++ + E Y N Sbjct: 62 QDVKQSFGQGNISFTDNGLDMAIAGDGFFILNNGGEIRYSRAGQFGIDKEGYVTNNQNMR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKI--RADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + D + + R + + +L + + L + Sbjct: 122 VQGYTADEDGNLSGIRGDLQIATDNLAPRRTTNLDSDLNLDSRESVLETRVRDVGPLTLA 181 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + DV S ++ + T + + + Sbjct: 182 SIQGES-------FDVQYSDGSPAFNVNIDPAASAREAASTIN-----DAPGLSASATTT 229 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ T + FI G SS S G L + + + ++ + I + Sbjct: 230 ATFDGTPALDDAFISGA--SSFSFSLDINGSPLTLDTSNINSLQDLVDSINNSSETAISA 287 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + V + G + T+ + ++ S + + Sbjct: 288 SIVTGGGGSDVLRVIHNQGETLDFTFADGNGNGDTGTVEGDVNVTADRSVAGITSTTADN 347 Query: 361 FLWNVKNLA 369 N + Sbjct: 348 DFEVAFNAS 356 >gi|317047691|ref|YP_004115339.1| flagellar hook-basal body protein [Pantoea sp. At-9b] gi|316949308|gb|ADU68783.1| flagellar hook-basal body protein [Pantoea sp. At-9b] Length = 406 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 75/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + + AS I NI N+ + V + +N Sbjct: 2 SFSQAVSGLSAASSNLDVIGNNIANSATAGFKSSTIAFADLFAGSDVGLGTKVAAVIQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F + + + N Sbjct: 62 NDGTTTTTSRGLDVALSGNGFFRMTD------SSGAVYYSRNGQFTLDENRNLVNTQGLY 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +Q N Sbjct: 116 VTGYPASGSPATIQT----------------------------------GANPVALSIPT 141 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ A V + I T ++N T++++ D + Sbjct: 142 TQMSAKATTTATQVANLNSTSDIPSVTTFDSSNVDSYNAKSTMTVYDSQGNDHTLDMYYV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + +D +S + L Sbjct: 202 KTGDNAWTVHAVDSTTGASAGDFDLTFDSSGNL--------------------------- 234 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G + ++ + Q +F Sbjct: 235 ---TSVGGVTGATTVALSIDGTNGAAAGQSITLNMQGSLQQNTGTTTFGNPTQDGYAPGD 291 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A + L N W + S + Sbjct: 292 LTTYTINDDGTITGTYSNQQTQLLGQIVLASFSNPEGLQSEGDNV--WSATSSSGQAAIG 349 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 TAGTGTFGSLTAGALEASNVDLSQELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 405 >gi|332759635|gb|EGJ89940.1| flagellar hook protein flgE [Shigella flexneri 2747-71] gi|332767683|gb|EGJ97876.1| flagellar hook protein FlgE [Shigella flexneri 2930-71] Length = 402 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 104/476 (21%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q+ + I + + + +N Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGSNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L T + Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401 >gi|300693338|ref|YP_003749311.1| flagellar hook protein flge [Ralstonia solanacearum PSI07] gi|299075375|emb|CBJ34670.1| flagellar hook protein FlgE [Ralstonia solanacearum PSI07] Length = 401 Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 106/473 (22%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + R Q ++ ++ T N A+ Sbjct: 87 TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYGVDATGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D T T N Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFTINLDAAATVPTTTPFSATNSATFNHSVSEQVYD 194 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + V Sbjct: 195 GT-------------------------GTSHMLTNYYVRTATGWDVYSQVDGANPTGGNP 229 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + L + + + QY + Sbjct: 230 VTSLTFNSSGTLTSSPSKVAVAFAGMSIANMDFTGTTQYGGGFNDTTVSQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + L N W+E S S + Sbjct: 290 YSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D++LQTL+ Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400 >gi|261341494|ref|ZP_05969352.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288316290|gb|EFC55228.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 395 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/474 (9%), Positives = 122/474 (25%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + N ++Q +I NI N+ + + N + Sbjct: 2 SFDIAISGLNAINEQLGAISNNIANSGTVGFKSGRAEFASLYAEGQPLGVGVTN---VAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + L + D + ++ Sbjct: 59 SISKNGTVFASASSLDLAINGQGFFVMRDSSGTTAYTRAGYMQT---------------- 102 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + ++ + + TV N I + Sbjct: 103 -----------------DSNGNLVNNQGMYLQGYPVDANGVIQTGTVGNLTISSGSLPAK 145 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ +E + ++ + T +++++ R+ ++ T Sbjct: 146 ATSSLDFTANL---NANEEKPKTATFDPTDETSYNHTYATQVYDSLGREHTLKQYFVKTD 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + D + ++ +L+ + Sbjct: 203 DNTWQVHYY-----------------------MDDKSMGDAKDMTFNEQGILLKPNGAVN 239 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + + Q+ S+ S ++ G+ Sbjct: 240 LTAA----------------IPGADSISLDLNYNGTTQFGSDFSVSKNNGNGYASGERTG 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + + +A + L +N W + S + L Sbjct: 284 QTIDKDGSVYATFSNGERLLQGQVVLANFSNPNGLSS--QNGTTWTQTASSGAPLLGTPG 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ + VNL +EL L+ +++Y + K+I D M+ L + V Sbjct: 342 TGLLGALTSNTLEGSNVNLTDELVGLMTAQRNYQANTKVISTNDSMMTALFQAV 395 >gi|30062613|ref|NP_836784.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|161485924|ref|NP_706995.2| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] gi|30040859|gb|AAP16590.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|313650473|gb|EFS14880.1| flagellar hook protein flgE [Shigella flexneri 2a str. 2457T] gi|332758235|gb|EGJ88558.1| flagellar hook protein flgE [Shigella flexneri 4343-70] gi|333005591|gb|EGK25109.1| flagellar hook protein flgE [Shigella flexneri K-218] Length = 402 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 79/476 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q+ + I + + + +N Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L T + Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401 >gi|254457451|ref|ZP_05070879.1| flagellar hook-associated protein FlgK [Campylobacterales bacterium GD 1] gi|207086243|gb|EDZ63527.1| flagellar hook-associated protein FlgK [Campylobacterales bacterium GD 1] Length = 626 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/422 (11%), Positives = 125/422 (29%), Gaps = 16/422 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51 S+ + + N A + NI NA+ Y R+ +T Sbjct: 3 SIFNALHIGYSGLNVAQIGINTTGHNISNAEVDGYTRQRVITAAATPLQTYPGNVGNGAQ 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V+ + N S + +++ + Sbjct: 63 VMDIKRVFDNFVFDRYTDISETKEYSDFETKTLEELSTYF-PEIDGVGIKADLTEYYNMW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 ++++ N D + + + + Q+ + +V+ +++ + ++ + I+ + +L Sbjct: 122 QTFADNPDNDAIKLALATQTKTLTQHIAYTQTQVKSLQSQLNDQLAVNINEVNSIAKQLA 181 Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 +N +I+ A K A+D D+R+V+ + ++ +IG T + S T + Sbjct: 182 DLNKSIEIAEAGKTYTANDLRDKRNVMERSLARLIGAVTNAGQIESNIQVDSSSNTKTGS 241 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 +N + + +PI++ S+ + + L+QI + + + Sbjct: 242 YSVSVN---GFNIVDGNSFHPIYLSRENNSNGFYEVSYERQDGTLIQIAEKISGGVVGSI 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + S V + S T + + + Sbjct: 299 LNLRGASLDTTSGMPTDGVVQNVVAQMDAFAKGLIESTNNVYANSATKRMESNKL-DLNP 357 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + Y N + G+ + ++ I Sbjct: 358 TNSLVNSTLNVQTGSFEMIVYDIDGNVTTKREIVINQATTMTGVAGSNSIQGQIEAQIDD 417 Query: 411 LE 412 Sbjct: 418 NG 419 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 49/425 (11%), Positives = 119/425 (28%), Gaps = 3/425 (0%) Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R+ + +++ A ++A + +Q + + N + Sbjct: 205 RNVMERSLARLIGAVTNAGQIESNIQVDSSSNTKTGSYSVSVNGFNIVDGNSFHPIYLSR 264 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 +N S + ++Q + V + S + VV Sbjct: 265 ENNSNGFYEVSYERQDGTLIQIAEKISGGVVGSILNLRGASLDTTSGMPTDGVVQNVVAQ 324 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 F ++ + +++ T N+ + V T + + ++ Sbjct: 325 MDAFAKGLIESTNNVYANSATKRMESNKLDLNPTNSLVNSTLNVQTGSFEMIVYDIDGNV 384 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + + + + G A I + + F Sbjct: 385 TTKREIVINQATTMTGVAGSNSIQGQIEAQIDDNGDGNANNDINNFI--QFNWATFAGGG 442 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + D + + + + + S Sbjct: 443 NALELTLDPLAESRGYTFSMQDILKDTSYSSGSNFAGALGMSRYFDGDSAQSISLNYTLA 502 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + +AG + + + F F V + N T + Sbjct: 503 NNPTLITPGATPVAGDNVVALNMVQHQYEKFDFY-VGNQDFNTTTYAMFDIIATEVGTQT 561 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + +N Y++ V+L EE++ LIK + SY + K+I D+M+QTL Sbjct: 562 NAAILKNETITTQYNATELEYNSVSKVSLDEEMTNLIKYQTSYGAAAKIITTIDQMMQTL 621 Query: 476 LEGVK 480 L + Sbjct: 622 LGIKQ 626 >gi|217077695|ref|YP_002335413.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] gi|217037550|gb|ACJ76072.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] Length = 704 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 47/456 (10%), Positives = 119/456 (26%), Gaps = 24/456 (5%) Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT----H 102 V + + I Q +F S D +S + Sbjct: 251 GNVVQSGAIKQSLSATATTDGSLTLNNIQQDDGNYTFIIKDSNGSILDVQTSSVSSGNAT 310 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE--IELEI 160 S+ + +Y ++ D++ + +A ++ I++ + Sbjct: 311 ISSEKIVNGGNYIVEIANDVVDLQTPGYVLSTETPTSVAANQIDFTYNGTTTSSPIKVFV 370 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + L +N+ + S + + + + + + Sbjct: 371 RDGNGNLVGEYSLNNITNGTSYSLSGVFNPSGTYTIEVVREDTVNSVVVPGSGEPRFYEA 430 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + Y + ++ID V +S+N K ++R+ Sbjct: 431 DNPTNFAVSEFNSPFYTTSVQVYDTLGNAYTLYIDFVKLSANYYDGTDTFKNAWAFRVRN 490 Query: 281 ----------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + DP G + Sbjct: 491 ASGENIKYLSNYETGQEITSGTAGVMTFDESGRFTGIYAFDPSTGKVNRGESIDAIKFDA 550 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + I + Q+ + + + + ++A D+I + + Sbjct: 551 GENGDGEVKIKLNLTGITQFAATSDAYVTEQNGNAQGTLESFSIAENGDIIGTFSNGLTD 610 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A N LLE + E S + + V+L Sbjct: 611 KLGKVALAIFNNPAGLLEAGNSLYT--ESANSGGAIIRQPGFGGSGSLISGALEMSNVDL 668 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE + LI ++ + + +++ D++LQ ++ + Sbjct: 669 SEEFTKLIIAQRGFQANARVVTTADQILQEVVNLRR 704 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 45/443 (10%), Positives = 105/443 (23%), Gaps = 34/443 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 ++ Q + NI N + + V Sbjct: 1 MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60 Query: 51 --------TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V S +K M F LK+ Sbjct: 61 GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIQGDGFFILKD------GSGKIYYT 114 Query: 103 YISKLRDSLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + S L V + E + F + + + I+ A + + + Sbjct: 115 RAGNFDLDVNGTLVQASSGLKLQGWVAEPDPESGKRFVDTNKPISDIQISAGLSMAAKKT 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + L K + +D + + ++ + + + V Sbjct: 175 SYMTVANNLDARVGPSKTVMTLSGYGGNSVDVKILFDRESGALQEPFSDYQIYRAKVYSG 234 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 SD + E + F + +S + G +++ + Sbjct: 235 SDDSVDGEIYIKFDKFGNVVQSGAIKQSLSATATTDGSLTLNNIQQDDGNYTFIIKDSNG 294 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + Q ++ SEK GN + D + + Sbjct: 295 SILDVQTS--SVSSGNATISSEKIVNGGNYIVEIANDVVDLQTPGYVLSTETPTSVAANQ 352 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + N + V + N + Y S++ + +F+P + T+ Sbjct: 353 IDFTYNGTTTSSPIKVFVR-DGNGNLVGEYSLNNITNGTSYSLSGVFNP----SGTYTIE 407 Query: 402 EYARNSIGWLEKNRSDSHDLHMK 424 +++ + S + Sbjct: 408 VVREDTVNSVVVPGSGEPRFYEA 430 >gi|300696913|ref|YP_003747574.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] gi|299073637|emb|CBJ53157.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] Length = 401 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 57/473 (12%), Positives = 113/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + R Q ++ ++ T N A+ Sbjct: 87 TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D TVP F +S T Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAA----------GTVPTTTPFSATDSSTY 184 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + DG S + + + Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTASGWDVYSTVDGAAPTGGNPV-------------- 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + L + + + QY + Sbjct: 231 -TSLTFNSSGVLTSSPSTVAVAFTGMSIANMDFTGTTQYGGGFNDTSVTQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + L N W+E S S + Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D++LQTL+ Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400 >gi|218700421|ref|YP_002408050.1| flagellar hook protein FlgE [Escherichia coli IAI39] gi|218370407|emb|CAR18214.1| flagellar hook protein [Escherichia coli IAI39] Length = 400 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 55/473 (11%), Positives = 115/473 (24%), Gaps = 75/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + +N N + KT + Sbjct: 97 NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L+ D L + +N T+F++ + T Sbjct: 153 SMQINLNSSDPLPSVKA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + +D + A L A ++ S KD Sbjct: 205 DNNWDVYTLDSSDPTGTANPATT---------------------LVFNANGVLTSDPTKD 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 244 ITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + + +A N L N W S L Sbjct: 290 YQINDDGTVVGNYSNEQTQ-LLGIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 346 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 347 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 399 >gi|170735956|ref|YP_001777216.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818144|gb|ACA92726.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 414 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + L Sbjct: 66 QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + L+ + + K Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTSNIAPRATSKITGQFNLNAQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D + I + + + + +Y + + Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKNAAGTWQAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + G++ + Q Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY Sbjct: 256 ------------AFSIPNTTGGANPQNLTLDLGGTTQYGGKDGVNNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S VNL EL LI +++Y + + I + QTLL Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413 >gi|107026757|ref|YP_624268.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116692051|ref|YP_837584.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105896131|gb|ABF79295.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116650051|gb|ABK10691.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 414 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + L Sbjct: 66 QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + L+ + + K Sbjct: 126 AAGAGGMI----------------NTAQTVPLQAPTSNIAPRATSKITGQFNLNAQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D + I + + + + +Y + + Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKNAAGTWQAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + G++ + Q Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY Sbjct: 256 ------------AFSIPNTTGGANPQNLTLDLGGTTQYGGKDGVNNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S VNL EL LI +++Y + + I + QTLL Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413 >gi|284989548|ref|YP_003408102.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] gi|284062793|gb|ADB73731.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] Length = 408 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 116/478 (24%), Gaps = 70/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L N A + + NI + V ++ ++ Sbjct: 1 MLRSMNSAISGLRAHQTKLDVTGNNIA----------------NVNTVGYKASQTVFEDT 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +V+ S+ Q N ++ Sbjct: 45 LSQVVRNGSAPTAQAG------------------------------------GTNPAQVG 68 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 LG V Q + D + N + + + D Sbjct: 69 LGVKVAGITTNFEQGSAQNTGRSTDFMISGDGFFITQAGNEQLYTRAGSFSYDGAGNLVT 128 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D ++ I ++ + T V +++ N Sbjct: 129 PDGALLQGWMATDGVVNTNGPIRQLTVPFGDVMQPT------ETDNGAVVGNLSSAAANG 182 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V ++ G + D+ + +E Sbjct: 183 TGVQTQMTMYDALGKAHQISLSFTKTG----------DNTWNVVARDENEAVLASTAGPL 232 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 +P+AG F + ++ + Q+ + Sbjct: 233 AFNPVAGTLPAASRTFQITPDASMAGSWPGQVTIDLADLRQFGGPSGLTPARVDGNAMGS 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +L+G ++ Y ++ + +A L + + + + S + Sbjct: 293 LQSISLSGDGTVMGVYSNNLREPIGKLALATFANPGGLAKAGNS--SFRVGDNSGQPAIG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L EE + LI ++ + ++++I +D++LQ L+ + Sbjct: 351 EPGGGGRGSLVAGALEMSNVDLAEEFTGLIVAQRGFQANSRVISSSDEVLQDLVNLKR 408 >gi|313610113|gb|EFR85437.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL F2-208] Length = 389 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 110/341 (32%), Gaps = 26/341 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48 M L FN + + + A +NI N + Y+R+ T + Sbjct: 1 MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V + + + + N P+ + Sbjct: 60 GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + +KN + ++ + N ++++ + + I +L + Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDTAIQDLNSLIK 178 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +L +N AI A + +D L++RD LL ++ GIS NN V + G L Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNKRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 T T+ +DG ++ +P+G I A +++ + + +Q Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 +++ L + + N I D ++ N Sbjct: 287 KIETXXNGLAKALDDIQVKNVNKTMDDLQKINDALQANPND 327 >gi|149202208|ref|ZP_01879181.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] gi|149144306|gb|EDM32337.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] Length = 419 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/483 (11%), Positives = 107/483 (22%), Gaps = 77/483 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F+ A + N A + NI N + + Sbjct: 2 SFHTALSGLNAAQTDISVTSNNIANVGTLGFHGSRAEFADIYTTSPYSRPASQIGSGTEV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L A + + F ++ + D ++ + E + Sbjct: 62 SRIGVDFKQGSLTATGNVLDLSLQGPGFFQVR---TGPDAGADAGYTRAGAFGMNREGFV 118 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L TV +E T + +Q + + + N Sbjct: 119 TNAAGHFL--TVFPTSENGDTLSTTQTQRLQIPQQFGTPQATTAVD---------LSFNL 167 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 ++ A D Sbjct: 168 SLSNNGGLGAQAAIPAAAFD----------------------------------PADPTT 193 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + V S+ A+ G + + D V+ + L ++ Sbjct: 194 YAATTQIPVLDAAGRAVPAQAYFVMSDAPDALDGGLAYTVQLVVDGVITAPTDPLATLSF 253 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G D + + G + + + R Sbjct: 254 D----------AGGAQTGGLEAMNFDFGEQALSLSLGGSRVSEGPFGAIAVSQNGTRQLD 303 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 S + A Y + VA + L + Sbjct: 304 LSSVDVRQDGTVWASYGAET-------SVAVGQVAVANFSDIQGLGSIGSA--TYRASRE 354 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S L + F I V+L E+L LI +++Y S K + + T+ Sbjct: 355 SGDVRLGVPGTSGFGAIRAGSVERSNVDLTEQLVNLIMAQRNYQASAKALETNGTLADTV 414 Query: 476 LEG 478 L Sbjct: 415 LNI 417 >gi|187925761|ref|YP_001897403.1| hypothetical protein Bphyt_3791 [Burkholderia phytofirmans PsJN] gi|187716955|gb|ACD18179.1| protein of unknown function DUF1078 domain protein [Burkholderia phytofirmans PsJN] Length = 503 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 43/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70 I NI NA+ + N + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLAEVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119 + A+ F L S N + + + N + Sbjct: 77 NQALDVAINGNGFFQLSNNGSMVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + N + + + + + Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPTVTPALVAGSTLTTPGATITNTA 196 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + + + + + +G T+ Sbjct: 197 SGTNNDNYTVNFTSPTTYTVTDTTLGTTTAPATYTAGTAISLGNGQTITLNGTPATGDSV 256 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289 + T + + +S G + Sbjct: 257 AIAPTPVAFNQNSSSTYDYSTSTTVYDSLGGSQTVNMYFAKTAAGAWNVYAGTSTGTAQL 316 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G+ AG + P + + Q ++ I QY Sbjct: 317 IGHANFNSSGTLLSTTDAAGVATTTPFAYNFSIPTTDGSSTPQQLTLNIAGTTQYGGKDG 376 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + L +Y + +A + L+ N Sbjct: 377 VNSLQPDGYEAGTLTSFTIGADGTLTGNYSNRQTAALGQIALANFSNQNGLVNLGNN--E 434 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + S + + V+L EL LI +++Y + + I Sbjct: 435 FQQTSASGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQ 494 Query: 470 KMLQTLLEG 478 + QTL+ Sbjct: 495 TVDQTLINL 503 >gi|150021173|ref|YP_001306527.1| hypothetical protein Tmel_1293 [Thermosipho melanesiensis BI429] gi|149793694|gb|ABR31142.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 705 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 35/368 (9%), Positives = 89/368 (24%), Gaps = 4/368 (1%) Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + S ++ + +D + + V+ + + + LT + Sbjct: 340 ASTESGTVVSASQLDFTYNGSDITSNAKVFVRDSNGNLVAQYDFTSGLTNGTSYSLTGIF 399 Query: 175 D--AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 D + L + E + + YT+ Sbjct: 400 DPAESYTVEVYNGATINSLVVPGSGEPRFYEADNPTNFAVTEFNSPFYTTSVQVYDTLGN 459 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + K + + Sbjct: 460 AYTLYIDFVKLAANYNDGSADYKNAWAFRVRNATGENIKYLTNYDTGQEITSGTAGVMTF 519 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 DP G + + I ++ Q+ + Sbjct: 520 DESGRFTGLYAFDPTTGQINRGESIDAIKFDAAENGDGEVKIKLSLTGITQFAATSDAYV 579 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + + ++A D+I + + +A N LLE + Sbjct: 580 VNQNGNAQGTLESFSIAENGDIIGTFSNGLTDKLGKVALAIFNNPAGLLEAGNSLYTK-- 637 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S S + + V+L EE + LI ++ + + +++ D++L Sbjct: 638 SANSGSAIIRQPGFGGAGALISGALEMSNVDLSEEFTKLIIAQRGFQANARVVTTADQIL 697 Query: 473 QTLLEGVK 480 Q ++ + Sbjct: 698 QEVVNLRR 705 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/430 (8%), Positives = 87/430 (20%), Gaps = 41/430 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 ++ Q + NI N + + V Sbjct: 1 MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60 Query: 51 --------TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V S +K M F L++ + + Sbjct: 61 GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIRGDGFFILRDGV------GKTYYT 114 Query: 103 YISKLRDSLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI----E 157 + S L V + E + F + + + I+ A + Sbjct: 115 RAGNFDLDVNGTIIQPTSGLKLQGWVAEPDPESGKRFVDTNKPISDIQISAGLSMAAKKT 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH----------DAHDFLDQRDVLLQKISEIIGI 207 ++ + + I + D D +++ Sbjct: 175 TSMTVANNLDARVGPGKTVITLSGYGGNSVNVKIIYDRDKGGLQDPFSDYQIYRAKVYSG 234 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + + + Y G + + + S + DG + ++ Sbjct: 235 TDDNIDGEIYIKYDKFGNVVQSGAIKQQLSVTATTDGSLSLTGIGQEDGNYTFIIRDTSG 294 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 ++ +V + V+ + D LD Sbjct: 295 KILDVQTGSVSSGNVTVSSDQIKNGNNYVIEVAKDVVDLATPGFIASTESGTVVSASQLD 354 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + SN + + S +L G D Y Sbjct: 355 FTYNGSDITSNAKVFVRDSNGNLVAQYDFTSGLTNGTSYSLTGIFDPAESYTVEVYNGAT 414 Query: 388 FDPVAGINTN 397 + + + Sbjct: 415 INSLVVPGSG 424 >gi|206562843|ref|YP_002233606.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198038883|emb|CAR54845.1| flagellar hook protein 2 FlgE2 [Burkholderia cenocepacia J2315] Length = 414 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/472 (9%), Positives = 94/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + L Sbjct: 66 QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + L+ + + K Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTNNIAPRATSKITGQFNLNAQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D + I + + + + +Y + + Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKSAAGTWLAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + G+I + Q G + ++ Sbjct: 220 --------GQTPTNLGTVTFDASGRISSTTSAATGQPTPSLGQFAFSIPNTTGGANPQNL 271 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 272 T----------------------------LDLGGTTQYGGKDGVTNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQIAAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S VNL EL LI +++Y + + I + QTLL Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413 >gi|50120639|ref|YP_049806.1| flagellar hook protein FlgE [Pectobacterium atrosepticum SCRI1043] gi|49611165|emb|CAG74611.1| flagellar hook protein [Pectobacterium atrosepticum SCRI1043] Length = 405 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 120/476 (25%), Gaps = 76/476 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + + V S ++ Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGNVTFADMFAGSKVGMGVKVASVLQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + S + F L+ D ++ + Sbjct: 62 GNGTVTSSSRDLDIAISGGGFYRLQ------DTNGSTYYSRNGQFM-------------- 101 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L I NA+ + A ++ AD + L + + S+ +V + K++ Sbjct: 102 LNGRNIVNAQGMQLTGYPVAGTPPTVQTGADP-VPLTVPDGDMLASQTSVASIKANLKSS 160 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + S+ + + N T + + Sbjct: 161 DSVPTNAWATTPGAEGTYNSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSINPA 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +G + S+ Sbjct: 221 TYQNAGTLNFEANGALSSTGAT-------------------------------------- 242 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + + Q + S+ + Sbjct: 243 ------------AHTPFTLNLTGTNGAANGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGS 290 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L N W E S + Sbjct: 291 LTGFAINDDGTIEGSYSNGQKQALGQILLASFANPEGLSPEGDN--AWSETASSGQAVVG 348 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + + V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 349 LAGTGSLGKLIGKSTESSNVDLSKELVSMIVAQRNYQSNAQTIKTQDSILQTLVSL 404 >gi|220922287|ref|YP_002497589.1| flagellar basal body FlaE domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946894|gb|ACL57286.1| flagellar basal body FlaE domain protein [Methylobacterium nodulans ORS 2060] Length = 456 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 49/491 (9%), Positives = 115/491 (23%), Gaps = 46/491 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + A + + +I NI NA Y R DT V +Q S + Sbjct: 1 MDVFSALQTAVSGLKAQAFSLDNISGNIANAQTTGYRRIDTTFVDLLAEQPVKSQTSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-----------DHYNNSPTHYISKLRD 109 + ++ + + + + + + + Sbjct: 61 AAYSQLTNTLQGNLTSTGIGTNMALNGDGFFVVRIPGTDTAGQRSFSSENLYTRRGDFTV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + L +D Q + A A + + S Sbjct: 121 DKDGFLVNGAGSYLVGQSLDPLTGQTTGDGVIKISNQVLPAKATTALSYAAN----LPST 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 T A+ ++ G + + + Y+S G+ + Sbjct: 177 PTTTGSALLAALPGGDVRVLSGTASTPASVAAADTDGFLSSSISGGSLTAYSSTGSPVNL 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + ++ + N + +S + G P Sbjct: 237 QLRWAKVASADSTAGTSDTWNLFYAAQNGTTSASSTWKNVGTAFTFNASGQLTAPT---- 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + L S + + Sbjct: 293 ---------------------GGTLAIPNVTVDGTSLGTLTLDTGSGGLTQYGAANGQVT 331 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + Y + + V N L A + Sbjct: 332 TNTLQQNGYASGTLTALAVTSDGKITGTYSNGNDLALAQVGVVRFNAPDALR--AESLGN 389 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + +K V + E S LI +Q+Y+ + +++ Sbjct: 390 YARTADSGEPLIGLKGATVVG----GNVEQSNTDTANEFSKLIITQQAYSANTRVMSTAQ 445 Query: 470 KMLQTLLEGVK 480 +M+ L+ ++ Sbjct: 446 QMMTDLINIIR 456 >gi|161526186|ref|YP_001581198.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|189349098|ref|YP_001944726.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|160343615|gb|ABX16701.1| flagellar basal body FlaE domain protein [Burkholderia multivorans ATCC 17616] gi|189333120|dbj|BAG42190.1| flagellar hook protein [Burkholderia multivorans ATCC 17616] Length = 414 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 48/472 (10%), Positives = 94/472 (19%), Gaps = 66/472 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T + + Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S I + + + + +Y + Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNIYFVKSAAGTWEAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G G I + V P Sbjct: 220 --------GGKTNDLGTIQFDSSGAISGTTKAGTPVTP---------------------- 249 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 G F + Q ++ + QY Sbjct: 250 -----TEALGQFQFTVPNTDGSATPQTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLATF 304 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +Y + +A N L+ N E S + + Sbjct: 305 TIGTDGKVTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETAASGVPQISVPGS 362 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 363 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 414 >gi|171321838|ref|ZP_02910739.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] gi|171092876|gb|EDT38128.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] Length = 413 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 46/472 (9%), Positives = 98/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D V + + + L+ + T + + K Sbjct: 126 LSDKNGVV----------------NTAQTVPLQAPTTNISPTATTKITGQFNLNSQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S + + + + + +Y + Sbjct: 170 TKAPFDATDTSTYNYSTSVQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGATTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + I + G+ + + D Sbjct: 230 TFDSSGAIKTTTTGTPAVPTASVGQFQFTVPTTDGSTTP--------------------- 268 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY + Sbjct: 269 -------------------------QPLTLDLTGTTQYGGKDGVNNLAQNGYASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E S + Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYA--ETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|325529014|gb|EGD06027.1| flagellar hook protein FlgE [Burkholderia sp. TJI49] Length = 413 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 AI + + Y N L Sbjct: 66 QQFGQGAINATSSSLDVAINGNGFFQMSNNGAMTYTRDGTFQRDKNGYIVNAQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T + + Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDALP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S I + + + + +Y T + + T Sbjct: 170 TKTQFDPTDNTTYNYSTSIQVYDSLGGSQPVNMYFVKSATSGQWEAYAGVQGGSTTDLGT 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + V+ + + G+ + D L Sbjct: 230 VTFDSTGAIQSTVAPDGTATKSLGQFTFTIDNNDGSGTPQSLTL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +Y + +A N L+ N ++E S + Sbjct: 304 TIGNDGKVTGNYSNGQTATLGQIALANFNNPNGLVNIGGNQ--YVETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|254496887|ref|ZP_05109735.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] gi|254353906|gb|EET12593.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] Length = 437 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 48/476 (10%), Positives = 109/476 (22%), Gaps = 44/476 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---ISPENVTVVTQRSENKNM 62 +F+ + AS I NI N+ + + T + Sbjct: 2 IFDTGISGLQAASNNLDVIGNNIANSSTVGFKGSRANFGDIYSFGGYGSSGTTPGGGVML 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S + ++ + + + ++Y N S Sbjct: 62 TSIQQSFASGTMTSTNNTLDLAISGNGFFILNNQGATSYSRAGQFTLNNDNYITNSSGQF 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + D A + ++ + N + K T Sbjct: 122 LTGYLADAAGNITGASGNI---------------------------QVNMANLSPKATTL 154 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + ++ N M +Y S G + ++ + + Sbjct: 155 VSTGLNLNSQSKPPAADWSGGAAPVTDTYNNTTSMTIYDSLGNSHVLSMYFIMADSTATA 214 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + S + V+ + + N + A + Sbjct: 215 GQPDAASPVGQTNQWYVAFQIDNQDVP------------SIVTPGNSSNLFAANFNSDGT 262 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 +P I + +S + Q+ S + S Sbjct: 263 FTSVQDTTGTAIPTNLIPLSYTLTNGANPLSLSIDLSSCTQFGSPFAVQSANASGYTTGS 322 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + +A L + W S + Sbjct: 323 LAGLQVDAAGVISGSYSNGQTLAMGQIQLANFADLNGLQNIGN--VCWTATATSGQALIG 380 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + V++ EL LI ++ + + + I D + QT++ Sbjct: 381 TGGTGSFGTLLSGRLEESNVDITSELVDLIGAQRDFQANAQTIRAGDTITQTIINI 436 >gi|170751911|ref|YP_001758171.1| hypothetical protein Mrad2831_5543 [Methylobacterium radiotolerans JCM 2831] gi|170658433|gb|ACB27488.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 461 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 45/491 (9%), Positives = 116/491 (23%), Gaps = 41/491 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53 M L + + + + S ++I NI N+ Y R DT V Sbjct: 1 MDLFSALQTSVSGLQSQSYAISNISGNIANSQTTGYKRIDTSFVDLMSEKTPDREIAGSV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK----EMMSADDHYNNSPTHYISKLRD 109 +S+ N + + S Q F + + A Sbjct: 61 LAKSQLTNTLAGNIVSSSVPTNMAINGQGFFTVVQKTGDANGATTFGGTDLYTRRGDFAQ 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L + +D + + A A I Sbjct: 121 DKDGYLVNGAGGYLTGSNLDPITGQTTSIGPIKIGNATLPAQATTTITYA---------- 170 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + ++ + + ++ S G+ + + S+ Sbjct: 171 -ANLPSTPSTSASATSGSDLYNQNTAAVVTSGSGKTGVKVDSTQTGAVSTFMSNSIAGPS 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T ++ + + + + Sbjct: 230 LPVYTSTGAPLTLTTRWAKVQDATTTPAQPAVWNLYYSTNPSALSTSDWNNVGTAFTFDS 289 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + ++ + + G + S + + Sbjct: 290 TGKL-------------TSPSTNPIALGPVTMGDYTFPSLTMNLGSSGLTQYADTTGAAT 336 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + + V L Sbjct: 337 TNALTQNGNSSGTLTSVAVGPDGKVNGTFSNGSVVALASVGVVQFANADGLKADTNG--N 394 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +L+ S + IS + + ++ E S +I +Q+Y+ + +++ Sbjct: 395 YLQTVDSGPPLSGLNGS----TISGASNEQSNTDIASEFSKMIVTQQAYSANTRVMSTAQ 450 Query: 470 KMLQTLLEGVK 480 M+ LL ++ Sbjct: 451 TMMSDLLNVIR 461 >gi|296157456|ref|ZP_06840291.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] gi|295892228|gb|EFG72011.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] Length = 503 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 44/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70 I NI NA+ + N + + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119 + A+ F L S N + + + N + Sbjct: 77 NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + N + + + + + Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPAVTPTLVTGSTLTTPGATITNTA 196 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + + S + +G T+ Sbjct: 197 SGTNNDSYTVNFTTPTTYTVTDTTLGTTSAAATYTAGTAISLGNGQTITFNGTPATGDSV 256 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289 + T + + +S G + Sbjct: 257 AIAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWNVYAGTSTGTAQL 316 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G+ AG + P + + Q ++ I QY Sbjct: 317 IGHANFNSSGTLLGTTDAAGTATTTPFAYNFQIPTTDGSSTPQNLTLNIAGTTQYGGKDG 376 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + L +Y + +A + L+ N Sbjct: 377 VNSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--E 434 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + ++S + + V+L EL LI +++Y + + I Sbjct: 435 FQQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQ 494 Query: 470 KMLQTLLEG 478 + QTL+ Sbjct: 495 TVDQTLINL 503 >gi|254251191|ref|ZP_04944509.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124893800|gb|EAY67680.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 413 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 46/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASSALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + Y N L Sbjct: 66 QQFAQGTINTTNSSLDVAINGNGFFQMSNNGVITYTRDGTFQRDKNGYIVNSQGMNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + L+ + T + + K Sbjct: 126 AAGANGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S I + + + + +Y + Sbjct: 170 TKTPFDPTDNTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGTATDLGTI 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I G + + G+ + + D L Sbjct: 230 TFDTSGAISGTTLPGSTTPTTTLGQFQFTVPNTDGSATPQSLTL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY + Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQNGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L +Y + +A N L+ N ++E S + Sbjct: 304 TIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVAIGGNQ--FVETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|293409442|ref|ZP_06653018.1| flgE [Escherichia coli B354] gi|291469910|gb|EFF12394.1| flgE [Escherichia coli B354] Length = 401 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N A+ I NI N+ + V Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L + + + N ++ ++ + + Sbjct: 50 -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +E N ++ A + +N N + KT + Sbjct: 97 NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L+ D L + +N T+F++ + T Sbjct: 153 SMQINLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + L A ++ S + Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + Q + + + K Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + ++ +Y + + +A N L N W S L Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400 >gi|4928060|gb|AAD33398.1|AF129422_1 flagellar hook protein FlgE [Sinorhizobium meliloti] Length = 396 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 78/474 (16%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 + N S + +++ NI NA+ Y R T + Sbjct: 1 MRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSS--------------------- 39 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + S E + + ++ ++ L + Sbjct: 40 MILPSGNGSYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRA 99 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + N S + +A + + ++ + I + Sbjct: 100 GSFVPDSEGNLVNASGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIATGSTKGSM 159 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + G + + +VVY S G T + S V Sbjct: 160 GANLP-------------SGAAVGDVSTTSLVVYDSQGNTRILDFNYEKTGANAWSVEVV 206 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 ++ + ++ N + Sbjct: 207 DRTSSTVLGTQTLNFNADGS---------------------------------------- 226 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + A ++ + Q + + Sbjct: 227 --LTATPATLTTSAMTALPGTGANLSALTIDLTKTTQLGYAFNADGGNIDGNAPSKVAGY 284 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + Y + +A + + L + N S Sbjct: 285 QIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLKPESGNVYSQ--GVDSGVIITGFAGS 342 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I + V++ EEL+ +I+ +++Y ++K+ ++L+ L+ + Sbjct: 343 GDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 396 >gi|323527713|ref|YP_004229866.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] gi|323384715|gb|ADX56806.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] Length = 502 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 53/488 (10%), Positives = 107/488 (21%), Gaps = 32/488 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70 I NI NA+ + N + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS----KNLSEDILGKT 126 + A+ F L S N + + + S I+ Sbjct: 77 NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 N A + + + L + S T + Sbjct: 137 QTVPLSVPTANIAPKATTNISAGLNLNAQDPLMLGTPSVTASASNTGTLTSPGATITNTA 196 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + D V + T + + +L N + T Sbjct: 197 SGTNKDNYTVTFTSATAYTVTDTTLGTSTTGTYTAGSPISLGNGQTVTFNGVPGTGDSYT 256 Query: 247 SESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 P+ + S + + V + + Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWDVYAGVSTGTASLV 316 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 G+ AG + P +F + Q ++ I QY Sbjct: 317 GHANFNSSGTLLGTTDAAGTATTTPYVFNFSVPTTDGSSTPQALTLNISGTTQYGGKNGV 376 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + L +Y + +A + L+ N + Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--EF 434 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + ++S + + V+L EL LI +++Y + + I Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQT 494 Query: 471 MLQTLLEG 478 + QTL+ Sbjct: 495 VDQTLINL 502 >gi|291520179|emb|CBK75400.1| Flagellar hook-associated protein [Butyrivibrio fibrisolvens 16/4] Length = 199 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 16/188 (8%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPE 48 + +AS + N+ N + + YVR + Sbjct: 5 FGSLYVGASGLQSASHGLNTTANNLSNINTEGYVREQVVYEDRNYQKIGTAAISTQYRGL 64 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V V T DK + + + + + I + Sbjct: 65 GVQVGTIVHARDIFLDKAYRSENGRHSFYDASSEAVQEV-ITHLQESDGKAFEEAIENFQ 123 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ E ++K+ S+ + V+ A ++ + + + + +I ++ + Sbjct: 124 EAFEEFAKDPSDTVNQNLVLQKASLFLERTKAVEQGFEDYQTIINSKINEKLERINEIGK 183 Query: 169 ELTVVNDA 176 E+ +N Sbjct: 184 EMVELNKR 191 >gi|107023946|ref|YP_622273.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia AU 1054] gi|116691033|ref|YP_836656.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia HI2424] gi|170734367|ref|YP_001766314.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia MC0-3] gi|105894135|gb|ABF77300.1| Flagellar hook-associated protein [Burkholderia cenocepacia AU 1054] gi|116649122|gb|ABK09763.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia HI2424] gi|169817609|gb|ACA92192.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia MC0-3] Length = 643 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 50/440 (11%), Positives = 133/440 (30%), Gaps = 21/440 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 ++ N + N A + +NI NA Y + P+ V V Sbjct: 3 NSLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L+ + G S + I+ +++ Sbjct: 63 TVQRQYSQYLSDQLNGAQTQGGALSTWYSLVTQLNNYIGSPTA--GISTAITSYFTGMQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S+ + +T + NA+ + + ++ +R + ++ ++ + + +++ + Sbjct: 121 VANSASDSSVRQTAMSNAQTLANQITAAGQQYDALRQSVNTQLTSTVTQINAYTAQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I ++ + +DQRD+ + +S + G+ + ++ V+ S GT L Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSNLAGVQVVRNSDGY-SVFMSGGTPLVVADKS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+ +++ G + LL R + + Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGATPQGPNQFLSDASLSGGTLGGLLAFRSQTLDPAEA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + + G + + + Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLSGKVGGNLFSTGAPITYANQGNTGNAALSVSFANAAQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 D + + + A + NF F + + ++ R Sbjct: 360 PTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAGDKFTVQPTR 419 Query: 406 NSIGWLEKNRSDSHDLHMKS 425 ++ S+ + + Sbjct: 420 GALNGFGLTTSNGSAIAAAA 439 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/351 (10%), Positives = 96/351 (27%), Gaps = 14/351 (3%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + A + + + ++ + S + +Q + + Sbjct: 291 SQTLDPAEAQLGAIATSFAAQVNAQNALGIDLSGKVGGNLFSTGAPITYANQGNTGNAAL 350 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 S + ++ + Y TL + + + N F G + + Sbjct: 351 SVSFANAAQPTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAG 410 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 ++ + P + S + + + + A Sbjct: 411 DKFTVQPTRGALNGFGLTTSNGSAIAAAAPYVPSATTTNTGNGTIGGLSVTSATAAANAH 470 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--------------SKKFLWNVKN 367 + T+ N S + S + + Sbjct: 471 NYTITMGGTTAAPTYTVTDNTAVPPTTSAAQPYQSGSPITLTAGVTVTVSGTPAVGDTFK 530 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 +A N ++ + + + + N + TL N + + S Sbjct: 531 VAPNTGGTNDGSNALALSKLVNSKSFGNGSATLTGAYANYVNGIGNTASQLKSSSAAQTA 590 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+++ + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 591 LVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQTVLGL 641 >gi|115353118|ref|YP_774957.1| flagellar hook protein FlgE [Burkholderia ambifaria AMMD] gi|115283106|gb|ABI88623.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria AMMD] Length = 413 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 45/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALSSVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D V + + + L+ + T + + K Sbjct: 126 LADKNGVV----------------NTAQTVPLQAPTTNISPTATTKITGQFNLNSQDKVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S + + + + + +Y + Sbjct: 170 TKTPFDATDTSTYNYSTSVQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGATTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + I + G+ + + D Sbjct: 230 TFDSSGAIKSTTTGTPAVPTTSVGQFQFTVPTTDGSTTP--------------------- 268 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + Q+ Sbjct: 269 -------------------------QPLTLDLTGTTQFGGKDGVNNLAQDGYASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E S + Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYA--ETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|323137001|ref|ZP_08072081.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] gi|322397762|gb|EFY00284.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] Length = 417 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/485 (9%), Positives = 100/485 (20%), Gaps = 77/485 (15%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVT 54 S +FN + + S A+I NI N+ Y R T V+ Sbjct: 3 STFGLFNTSIMGMSAQSDALANISENIANSGTVGYKRATTHFLTVLSGFQGSNQFGGGVS 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 RS L S+ F + + + Sbjct: 63 TRSRYDITGQGALMHTGSSTDMAIRGNGFFVVSD------GAGGTFLTRAGSFVPDSSGR 116 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N + L A N + + S + Sbjct: 117 LVNAAGYYLMGFPAGPAAPTTSATNALSSMSIVQIRNDRLYANPTTSGV----------- 165 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 +S + +S T Sbjct: 166 --------------------------LSANLPVSAT----VVPAANLPSTNTAGAQFSAK 195 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + ++ + + + G + + Sbjct: 196 TSLTVYDNLGKPVVLDVYYAKTADNTWEMTMYDASGATSGGFPYASGPIATQTLTFNPAN 255 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + G + ++ + Q + Sbjct: 256 GSIASGGTLNFTVPGGAS---------------------VTLDMSNTTQLGAPFVVNNAT 294 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ L + +A + L Y N Sbjct: 295 VNGNAAGAIRQVQISSDGTLSYQLDNGQMVPAYLIGIANVAAPTELASYTGNVYT--ATG 352 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + F I+ + V+L ELS +I ++SY + + ++LQ Sbjct: 353 ASGPISVGAPGKGGFGDIASATLEASNVDLATELSTMIIAQRSYTANTQSFQVASEILQV 412 Query: 475 LLEGV 479 L Sbjct: 413 LNNLK 417 >gi|304438499|ref|ZP_07398439.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368582|gb|EFM22267.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 711 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 4/288 (1%) Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 R L ++ ++ + + + T DG + + M + Sbjct: 428 YRGRLNGDDGKVKSVTRTSKEEESVTLTTKDGQVFTGAINGEYTVGNMYYPPSVTTFTVY 487 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 G S + D ++ E++ L + + Sbjct: 488 DSLGGAHSIPLVFRKVGANEWDMSLGADDTYSYKEDNGTEVSAQLTKTRLKFSQTGHYVS 547 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + ++ + + ++ ++ QY + + ++ + + + + Sbjct: 548 GDATVSLSYKREGAEEPKPHKVTVSLGALTQYSGSST-IKAESDGNAEGVLKNVTIDSTG 606 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + Y + K +A N L N + + N S + ++ S + I Sbjct: 607 TITGVYSNGKIKAEAQLAIAQFNNPSGLTRAGGNF--FQQSNNSGAANVKTASDLGC-TI 663 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S V+L ++ S +I ++ + ++K+I D+ML+TL+ + Sbjct: 664 TPSALEMSNVDLADQFSDMIVTQRGFQSNSKIITVADEMLETLISMKR 711 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/402 (6%), Positives = 79/402 (19%), Gaps = 14/402 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ + + + NI N + Y + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVVGHNIANVNTVGYKASRVTFADTLYQTSSGASAPTGNLG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 N+ ++ + + + + Sbjct: 61 GINPKQIGLGMNVASIDTIFGDASAQGTGKNTDVALSGNGLFIVKNGSGTYYTRDGAFEF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + K E+ + L + Sbjct: 121 DAQGNYVLPGNGSFVQGWMARENGELVTTEQPGNITIKAGKSMQPEMTGAATYLNNLNAN 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A + + +S + V ++D+ Y Sbjct: 181 TKGYEIASIVAKYKDGTQKSLASYKQGNVGVMSLGTDKNRSVTLDDDVADYKFTTNDDLC 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + N I G+ + +N S + + + V Sbjct: 241 VPGATQGRALFKTTVTSLDPNGHNI-GLTLKNNPDSFSIQEQNGTTFSDIEFDVNTGGPY 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G S+ K L+ + +P Sbjct: 300 SIGQNFTISGEIDTNGVTTNGSDPGVTELTLKNAKILNPDGTTTLKTLTNKVKVKVPSPK 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 KF ++ + D+ ++++ D Sbjct: 360 DFTYQDGDRLKFGMSISKMEAETDVKAATPNTYSNGTKLDGN 401 >gi|299068732|emb|CBJ39971.1| flagellar hook protein FlgE [Ralstonia solanacearum CMR15] Length = 401 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 59/473 (12%), Positives = 112/473 (23%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ I N+ NA+ Y + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + R Q ++ ++ T N A+ Sbjct: 87 TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + ++ + +T N D TVP F NS T Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAA----------GTVPTTTPFSATNSATY 184 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + DG S + + + Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTGTGWDVYSTVDGAAPTGGNPV-------------- 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + L + + S QY + Sbjct: 231 -TSLTFNSSGALTSSPSKVAVAFTGMSIASMDFTGTTQYGGGFNDTSITQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + L N W+E S S + Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D +LQTL+ Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSM 400 >gi|206558976|ref|YP_002229736.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia J2315] gi|198035013|emb|CAR50885.1| flagellar hook-associated protein 1 (HAP1) [Burkholderia cenocepacia J2315] Length = 643 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 51/440 (11%), Positives = 132/440 (30%), Gaps = 21/440 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53 + N + N A + +NI NA Y + P+ V V Sbjct: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T + + L+ + G S + I+ +++ Sbjct: 63 TVQRQYSQYLSDQLNGAQTQGGALSTWYSLVTQLNNYIGSPTA--GISTAITSYFTGMQN 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S+ + +T + NA+ + + ++ +R + ++ ++ + + +++ + Sbjct: 121 VANSASDSSVRQTAMSNAQTLANQITAAGQQYDALRQSVNTQLTSTVTQINAYTAQIAQL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I ++ + +DQRD+ + +S + G+ + ++ V+ S GT L Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSNLAGVQVVRNSDGY-SVFMSGGTPLVVADKS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + S+ +++ G + LL R + Q Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGANPQGPNQFLSDASLSGGTLGGLLAFRSQTLDPAQA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + + G + + + Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLSGKIGGNLFSTGAPITYANQGNTGNATLSVSFANAAQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 D + + + A + NF F + + ++ R Sbjct: 360 PTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAGDKFTVQPTR 419 Query: 406 NSIGWLEKNRSDSHDLHMKS 425 ++ S+ + + Sbjct: 420 GALNGFGLATSNGSAIAAAA 439 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 40/351 (11%), Positives = 96/351 (27%), Gaps = 14/351 (3%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +A + + + ++ I S + +Q + + Sbjct: 291 SQTLDPAQAQLGAIATSFAAQVNAQNALGIDLSGKIGGNLFSTGAPITYANQGNTGNATL 350 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 S + ++ + Y TL + + + N F G + + Sbjct: 351 SVSFANAAQPTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAG 410 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 ++ + P + S + + + + A Sbjct: 411 DKFTVQPTRGALNGFGLATSNGSAIAAAAPYVPSATTTNTGNGTIGGLSVTSATAAANAH 470 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--------------SKKFLWNVKN 367 + T+ N S + S + Sbjct: 471 NYTITMGGTAAAPTYTVTDNTAVPPTTSAAQPYQSGSPITLTAGVTVTVSGTPAAGDTFK 530 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 +A N ++ + + + A N + TL N + + S Sbjct: 531 VAPNTGGTNDGSNALALSKLVNSKAFGNGSTTLTGAYANYVNGIGNTASQLKSSSAAQTA 590 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I+++ + GVN EE + L++ +Q Y + K+I + QT+L Sbjct: 591 LVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQTVLGL 641 >gi|241589579|ref|YP_002979604.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] gi|240868291|gb|ACS65950.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 401 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 58/473 (12%), Positives = 108/473 (22%), Gaps = 74/473 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + + AS+ +SI N+ N + Y + Sbjct: 2 GFQQGLSGLDAASKNLSSIGSNVANVNTVGYKKSTVQFG---------------DVYARS 46 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ A + IGQ + + + N + + Sbjct: 47 LVGATDNQIGQGVSVTRVSQ--------------------SFTQGNVTVTGNPLDIAING 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + R Q ++ F+ T N AS Sbjct: 87 MGFYRMVDSSSGQVSYTRNGQFQ------------TDKNGFVISATGQNLTGYGVDASGK 134 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 L + + + +T N + T T N Sbjct: 135 VNTAALTNLRIPVNDLVPQATRNTAFGVNLNAAAAVPGATPFSPTNSATFNHSVSEQVYD 194 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + A + + V S Sbjct: 195 GT-------------------------GAPHMMTNYYVRTGAGWKVYSQVDGTSPVSGNP 229 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + L + S QY + + Sbjct: 230 VTTLTFNSNGQLTSGSTKIAVSFPGMSINSIDFAGTTQYGGGYNDVMVKQDGYATGRLAS 289 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + Y + + F +A L N W+E S S +L Sbjct: 290 YSVGIDGTVTGQYSNGRSAVFGQIAMANFKAPEGLQNIGGNQ--WVETANSGSPNLGTPG 347 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + S V+L EL +I ++SY + + I D +LQTL+ Sbjct: 348 MGSFGLLRSSAVEQSNVDLSVELVNMIVAQRSYQANAQTIKTEDSLLQTLVSI 400 >gi|331667482|ref|ZP_08368346.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271] gi|331065067|gb|EGI36962.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271] Length = 218 Score = 100 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 14/220 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + ++ N A + N A + NI + + Y R+ T+ V V Sbjct: 1 MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L A + + + M + +S + SL+ Sbjct: 61 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + +I +E +V F T+ + ++ + I + + + ++ Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178 Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTI 210 +ND I T + ++ LDQRD L+ ++++I+G+ Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS 218 >gi|299822273|ref|ZP_07054159.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] gi|299815802|gb|EFI83040.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] Length = 411 Score = 100 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 105/478 (21%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y R+ + T+ + S Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKRQSVVFNDLLYQNTLGSVTSG---- 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A+ +A + + + Sbjct: 57 -----LYAGTNPMSFGSGTKIGAVITDYTAGSPTATGRNKDAALQGNGFFIAGDRSGGNA 111 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + A T + + A ++ +N AI + Sbjct: 112 VYTRDGSFAVSSDNFLTTQSGKYVMGYATDKNGNVID----GNLRPIQIPLNSAIPGEAT 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ I + ++ + V DG Sbjct: 168 KNAKLSGNIPTDWKGKDTLTSEISVYDDAGGSHKLQVELKDG------------------ 209 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T ++ + + + + N + G + + Sbjct: 210 -TRAADGSISYSYELKIDGNALTPARTGTLN------------------------YNAQG 244 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E A I D L + + S+ + Sbjct: 245 ELTNAAALENINVNQTIQGKNVSFDFDLSKMTNYETEQVFSPSSDGKGAATVKDFAVTDA 304 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + +I D + S Sbjct: 305 GYIAVSYSDGTIIPVAQLGVATFSNVDGLVKNGNGEYTPGL-----------SSGDPVFG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS + V+L +E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGASLEGSNVDLSQEFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|289670516|ref|ZP_06491591.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 229 Score = 99.7 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAYVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 I ++++ A D LDQRD L+ K+ G + ++++ M V+T+ G Sbjct: 180 GTI--GNSAQNAAPDMLDQRDALVTKLVGYTGGTAVIQDGGFMNVFTAGG 227 >gi|291613038|ref|YP_003523195.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] gi|291583150|gb|ADE10808.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] Length = 405 Score = 99.7 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 53/474 (11%), Positives = 115/474 (24%), Gaps = 72/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS+ I N+ NA + + + Sbjct: 2 GFQQGLSGLNAASKSLDVIGNNVANASTVGFKQSQAQFADVYASSMAG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S+ GQ + + + + + + + ++ N S Sbjct: 50 ------SSGGQAGIGTRVATVAQQFTQGNITTTNNSLDMAVSGSGFFRMDNNGS------ 97 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ K + + L + A + + Sbjct: 98 ---------ITFSRNGQFQLDKNGFIVNSQGYKLTGFLPNAAGAIVATTPADIQVSTADL 148 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + L + NN S +T+++++ T Sbjct: 149 LPKATANVTAGLNLDARSTVPAIAPFDPNNPATFNNSTSSTIYDSLGGPHVASLYFVKTA 208 Query: 246 TSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 T+ + +DG V + +A+ L +V Sbjct: 209 TNAWSSYLTVDGTQVGAGALTAMTFSSSGVLTAPAGAVTSAA------------------ 250 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 Q +S Q+ S Sbjct: 251 ------------------FTPAGGGAAQTLSINFSGTSQFGSTFGVNSLSQDGYTSGHMT 292 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + Y + K +A + L N W+E + S + + Sbjct: 293 GFSTGSDGIVTGRYSNGQTKTLAQVVLANFSNAQGLQPLGNNQ--WVETSTSGTPLVGAP 350 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L EL +I ++ Y + + I D++LQT++ Sbjct: 351 GSASLGVLQTSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTIVNL 404 >gi|212637785|ref|YP_002314310.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212559269|gb|ACJ31723.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 402 Score = 99.7 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 112/474 (23%), Gaps = 73/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI N+ + + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNV-------- 53 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + D S + + Sbjct: 54 -----------------MSTSQNFSMGGSLVYTGRQLDMGIQGDGFFVLSSQDGNTMYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + N + + + +Q L+ N+ + + Sbjct: 97 AGMFNQDADGFVTDPAGNRLQGY--SVSGTGNLQTGNVTDLQVQAGALPAKATSTIGLIS 154 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + +D D ++ +N ++S ++++ + + T Sbjct: 155 NLDARVDPIDPVVNP----------FDPDNAATYHSSSTVAAYDSLGNEHALTQYYVKTA 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + + D V G D Sbjct: 205 DNTWSVHY-----------------------MMDDVDVTPA-----------AGHQLTFD 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + ++ + QY S+ + + N Sbjct: 231 SDGMLTGGDSLTLNINDPAIIGGASTLNLALGYDKSTQYASDYNNSSLNQNGYTSGELNG 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L L Y + + +A N L+ + N W N + + + Sbjct: 291 IRLDESGMLYGTYTNGQEQLQGQVVLADFNNPNGLIPVSNN--AWTATNAAGQPIVGTPT 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 349 TGTLGSVASGYLEGSNVDTTAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 402 >gi|170694392|ref|ZP_02885546.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] gi|170140815|gb|EDT08989.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] Length = 502 Score = 99.7 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 52/488 (10%), Positives = 109/488 (22%), Gaps = 32/488 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70 I NI NA+ + N + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLSEVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV--- 127 + A+ F L S N + + + + Sbjct: 77 NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSTGVINTA 136 Query: 128 ------IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF-K 180 + A + A + D ++ LT I Sbjct: 137 QTVPLSVPTANIAPKATTNIAAGLNLNAQDPLMLGTPSVTAATTNAGTLTTPGATITNTA 196 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + D + +G ST + +G T+ Sbjct: 197 SGTNKDNYTVTFTSATAYTVTDTTLGTSTTGTYTAGSPISLGNGQTVTFNGVPATGDSYA 256 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQL 290 + T + + +S G + V + + Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDTLGGSQTVNMYFAKTAAGTWDVYAGVSTGTASLV 316 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 G+ +G + P +F + Q ++ I QY Sbjct: 317 GHANFNSSGTLLGTTDASGTATTTPYVFNFSVPTTDGSATPQALTLNIAGTTQYGGKDGV 376 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + L +Y + +A + L+ N + Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--EF 434 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + ++S + + V+L EL LI +++Y + + I Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQT 494 Query: 471 MLQTLLEG 478 + QTL+ Sbjct: 495 VDQTLINL 502 >gi|94264101|ref|ZP_01287900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455517|gb|EAT05707.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1058 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 36/422 (8%), Positives = 103/422 (24%), Gaps = 13/422 (3%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + A+ + + + I + Sbjct: 644 RRVIANGDTLRFTGTAADGTVINLGDADFVVGTTGAGDAIDDFITWFNEIFGADT----- 698 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + A + + E+ + + + + N + Sbjct: 699 VALEGGALAFTDDDEVLSVELAEYVNATKAQPLGAGDFESSSANIGGMTNVTTTKRELIS 758 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 D D D + N T + ++ + Sbjct: 759 RDRAFSTDSGDPPVISAGTSWDSVYDSEGNQVGNGTIRFEGTDHNGTSVEGSYPIDLNAD 818 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL------DEMARVLI 298 + + + G++ + D + ++ L ++A V Sbjct: 819 PVPTVQGLLDEISETLNADAHIDGAGRLVIRDWVSDGIGDDEKSALSFQITEYDLAGVDG 878 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 G+ ++ + + + + + QY ++ + + Sbjct: 879 GAPAQIFGPVATDFHAIAGSLEEDGSQRGTVVSRSFETEAMSTTQYANSSTTIYQDQDGF 938 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ + +Y + +A L + N + +S + Sbjct: 939 AAGFLQSVSVDTGGIITGNYSNGQVLMQAQVALADFANLQGLHKVGGNI--FRATTQSGA 996 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 M I+ + V+L E +I ++ + ++K+I TD+ML L+ Sbjct: 997 PVTGMPGTNGLGEIAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELINI 1056 Query: 479 VK 480 + Sbjct: 1057 KR 1058 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/415 (8%), Positives = 91/415 (21%), Gaps = 20/415 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + + + + NI N + + + Sbjct: 1 MSLSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAFNSSRATFQDVLSQSVATSAGVAQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + + S+A + F MM A + R Sbjct: 61 GRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFF----MMRASGSAEADMFTRAGEFRF 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + + + +D+A + ++ + S Sbjct: 117 DTQGNLTSPAGHFIQGWQVDSATGQSFGTIGD----INLSRSTPPVRTEQVEMIVNLDSR 172 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-DGTTLF 228 + F + + + I V D T Sbjct: 173 EQPASQQRLFDAWDGTNMAAVNPTAPIDDANYAYTTSIKVYDSKGAAHDVTIYFDSTPKD 232 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + V + + + + + + S + Sbjct: 233 NQWEFLVTCDPASDLRVLDDREKVIHAPDERYNYEEHEGAGALMYGTIDFDTSGAIKGMD 292 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + I + + F A+ D +++ + Sbjct: 293 AWNVPPDGKVDPAQTTNRITLDPADNYFSFGANFTGDEQDQMIDLNFGARFSSQLSNIRQ 352 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + G+ S N I+ + + V G + +Y Sbjct: 353 ILVTNEGAYSDANATTPINRETLWREIHDRNGNQMEGGDLITVTGYDNEGYARDY 407 >gi|168703389|ref|ZP_02735666.1| hypothetical protein GobsU_27906 [Gemmata obscuriglobus UQM 2246] Length = 430 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 56/480 (11%), Positives = 126/480 (26%), Gaps = 50/480 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL A+F + S I N+ N + Y + + Sbjct: 1 MSLNALF-VGSSGLTTNSSALDVIGNNLANINTTGYKDQRMVF---------------RD 44 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ + S+ G + + + + N + Sbjct: 45 VVYQTLSSGTSADAGT--------------GGVNPTQVGFGVGVGSIGTQFTQGNLNPTG 90 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + V ++ + A + +L + +F Sbjct: 91 RSLDVGLQGRGFFV----------MRNVEDVAYTRAGAFGVDSAGYLVDPGTGFRVQRFG 140 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + A + D + + + I T + G ++ + Sbjct: 141 PVGEGGASNAGDPQFQIPGNLDIQIPFGTGAAGIATTNID-YQGNLSSAMQVGEVATTAI 199 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Y S + + + ++N + Q+ + PI N ++ Sbjct: 200 QVYDAQSTARAVTVTFTKTAANTYTPSVLVSGADAAQVTLTGGPISFNSTGQIVGTANTP 259 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + N+ + L G+ Q+ + G S Sbjct: 260 VTLTLTLGANALPGINTAQTITLNLGTAGLTNGL-------TQFGGATTASAIGQDGSGF 312 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + + + N VAG N LL N + S Sbjct: 313 GTLTDVSIDADGIVQGKFTNGRTINLAQLAVAGFNNEDGLLRSGNNY--FRSSVASGEAL 370 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Q + + V++ E S LI ++ + ++ + I T+ LQ L ++ Sbjct: 371 IGLAGQGGRGSLMGGALESSNVDIAIEFSRLIVAQRGFQVNARTISSTNDTLQELANIIR 430 >gi|209521596|ref|ZP_03270294.1| flagellar hook-associated protein FlgK [Burkholderia sp. H160] gi|209497979|gb|EDZ98136.1| flagellar hook-associated protein FlgK [Burkholderia sp. H160] Length = 664 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 18/382 (4%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53 + N + + A + NI NA Y + + V+ Sbjct: 3 SNLLNIGLSGLSAAQWGLTTTGENISNASTAGYTMETPVYSEVGGTYTGSGYLPMGVSTD 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T L+ S+ + + IS L+S Sbjct: 63 TVTRAYSQYLTTELNNAQSSSSSLTAYNTMITELNNLVGSPTS--GIASAISGYFTGLQS 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + S +T I +A+ + N + + ++R+ + ++ ++ + + +++ + Sbjct: 121 VANSASSVSTRQTAISDAQTLANQINAAGEQYDQLRSSVNTQLSNTVTQINTYTAQIATL 180 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 N I + + LDQRD + +S+++G+S + ++N ++ S+G L Sbjct: 181 NTQITQASNQGQSPNQLLDQRDEAVANLSKLVGVSVV-QDNGSYSLFMSNGKPLVLAGNS 239 Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +S T + ++V G + LLQ R + + Sbjct: 240 FNLGTATSSGDPTELSVQYLGQAGATPAPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEA 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QL +A + ++ + G + Q + Sbjct: 300 QLGAIATSFAAQVNAQNELGLTLSGTAGGALFTVGSPTVYANSQNTGTATLAVSFANATQ 359 Query: 349 SFLRDGGSVSKKFLWNVKNLAG 370 D +++ + Sbjct: 360 PTTSDYTLSYNGSTYSLTDNET 381 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 39/364 (10%), Positives = 92/364 (25%), Gaps = 4/364 (1%) Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + S + + + V A+ + + F + Sbjct: 303 AIATSFAAQVNAQNELGLTLSGTAGGALFTVGSPTVYANSQNTGTATLAVSFANATQPTT 362 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + V+ + I + + + D T+ T Sbjct: 363 SDYTLSYNGSTYSLTDNETGKVVGTASNLTSPIDGLQFSVASGTMKAGDSFTVEPTRGAL 422 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 F + + + S+ V +G + A S I + Sbjct: 423 DGFALTTTSPSAIAAAAPVLASASTSNTGSMTVTQGTVSAGYSAPTSTSTITYTSGTGLT 482 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 +GS S + A + + + +N + Sbjct: 483 GFPVGSVVTVAGSPSTSYTISTATTAVPYSSSSGATLTITNPSASTSAGVMNNVTVT--- 539 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + N ++ + + TL + + + Sbjct: 540 -LSGTPANGDSFTIEPNTSASNDGRNAQLLSNLTSAQVLNGGTATLTGAYASYVNTIGNQ 598 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + I+ + + GVN+ EE + L++ +Q Y ++K+I + QT Sbjct: 599 TTQISTSATAQSTLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQT 658 Query: 475 LLEG 478 LL Sbjct: 659 LLGI 662 >gi|251789168|ref|YP_003003889.1| flagellar hook protein FlgE [Dickeya zeae Ech1591] gi|247537789|gb|ACT06410.1| flagellar basal body FlaE domain protein [Dickeya zeae Ech1591] Length = 405 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/473 (8%), Positives = 104/473 (21%), Gaps = 70/473 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N AS I NI N+ + + V Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRV------- 54 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ + + + S ++ + + Sbjct: 55 ------------------ASVLQDFTNGSINSTSRALDVAINGSGFYRLLNGNGSVVYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + R + + + ++ Sbjct: 97 NGQF--------------TLDSSRNIVNAQGLQLTGFPATGTPPAIQSGADPVGLSIPEN 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ ++ +T + T ++++ NF T Sbjct: 143 TMSAKATNIASIIANLNSSDSTNTWNATDPTNTSNYKGSITTYDSLGNAHNFALYFVKTA 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + D + + + + Sbjct: 203 ANNWDVYAQDTSITGAGFQGP-----------------------------TRLTFDTSGA 233 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + Q + S + Sbjct: 234 LVPTPPATAVTPVTLSMASLNGSAASTFTLAFTGSVQQNSGSNSTKTPTQDGYEPGELTG 293 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +++ +I Y + + +A L N W N S + Sbjct: 294 YSISNDGSVIGSYSNKRTQLLGQIVLANFANPEGLSPQGDNV--WAATNNSGQAVVGSAG 351 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ + + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 352 TGNFGNLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 404 >gi|254175270|ref|ZP_04881931.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] gi|160696315|gb|EDP86285.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] Length = 413 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/469 (10%), Positives = 109/469 (23%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + + N + Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPI---------- 55 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + ++++ S +++ + ++ + S N + Sbjct: 56 --------GIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGMFQ 107 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + ++ +N A+ Sbjct: 108 RDK-------------------------------NGYIVNSQGLNLMGYAANANGVINTA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 I+ + N + + VP F + + + Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K + L + G+ + AG Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + QY + ++ Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + +Y + +A N L+ N ++E S + Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|239815263|ref|YP_002944173.1| hypothetical protein Vapar_2278 [Variovorax paradoxus S110] gi|239801840|gb|ACS18907.1| protein of unknown function DUF1078 domain protein [Variovorax paradoxus S110] Length = 395 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 47/477 (9%), Positives = 103/477 (21%), Gaps = 84/477 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L S+ I N N + + Sbjct: 1 MLESIYVGMTGLLGYSRGLRVIANNTANINTPGFKSSSLQFADMFY-------------- 46 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + G + + ++ S + +LR + + Sbjct: 47 ----------SGGNLGGGSTSQNRDQVGFGLSTAGTSLSFKQGELRQTGNDLDMAVDGQG 96 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L N + + L + Sbjct: 97 LFALQDANGKTTYTRAGQFK------------------FDADGTLVSRVNGEKVMGLDDR 138 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 A Q L + S + +N + T G + + S Sbjct: 139 GGLVAITLAGQMMSLGRPTS---RVEFSGNLSNTVTEQTIGGIAVVDASGASHTLTMKFS 195 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++S ++ + S + + + + L FS Sbjct: 196 VVSAAQSGTTMKVELMEGTTVVSTGQMVFVGGKPTPETAKLQAAYAPAGQPPMALTLDFS 255 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + S D Sbjct: 256 ------------------------------------SDVVLFAGQTSLKVDSQDGIGPGA 279 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + +L +Y + +A ++ + N E+ ++ L Sbjct: 280 LSGTTFDADGNLTLNYSNGSTVKGARLALARFDSPDAVGSLGDN---QFEQLDENAWHLG 336 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + F +S V+L +E S L+ +++ Y S+++I + MLQ L Sbjct: 337 VAGEGAFGKVSAGRVEISNVDLSQEFSDLVIMQRGYQASSQIISTANDMLQELFSMK 393 >gi|167626155|ref|YP_001676449.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167356177|gb|ABZ78790.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 402 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/474 (10%), Positives = 115/474 (24%), Gaps = 73/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI N+ + + + N Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNVMN----TS 57 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ E + S Sbjct: 58 QNFSAGGSLTYTGRQLDMGIQGEGFFMLSGQDGS-------------------------- 91 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 FN +A A + + + +T + A Sbjct: 92 ----TTYARAGMFNQNADGFITDPAGSRLQGYPVGATGNLQTGNVTDLQVQAGALPAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D ++ I +T +++ ++S T ++++ ++ + T Sbjct: 148 STVGLISNLDARVE---TIDPAATPFDSDDASTYHSSSTVTAYDSLGKEHALTQYYVKTA 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + ++ G + G D Sbjct: 205 DNTWSVHYMMGDTDVTPAGGH----------------------------------QLNFD 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + ++ + + QY S+ + + N Sbjct: 231 SNGMLTGGQDLTLDITDPNIVGGASNMSLALSYDKSTQYASDYNNSSLSQNGYTSGELNG 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L L Y + + +A N L ++ W N + + + Sbjct: 291 IRLDDSGMLYGTYTNGQEQLQGQVVLADFNNPNGLEPV--SNNAWAATNAAGQPIIGTPT 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I+ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 349 TGTLGSIAGGYLEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402 >gi|46579854|ref|YP_010662.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str. Hildenborough] gi|120602680|ref|YP_967080.1| hypothetical protein Dvul_1636 [Desulfovibrio vulgaris DP4] gi|46449270|gb|AAS95921.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str. Hildenborough] gi|120562909|gb|ABM28653.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311234145|gb|ADP86999.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1] Length = 564 Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 36/442 (8%), Positives = 98/442 (22%), Gaps = 11/442 (2%) Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + ++ + A S+ + + + +A+ + + T ++ Sbjct: 126 GYVLQGWAIERSQNSLTSSAVTATSTTSKIKGSGVPVDIKLDGFTAEPQHTQNITLNVNL 185 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + S + + N + + + + + ++ E Sbjct: 186 DSNPGNDKSSSTTNPYFSLFETWNGQNPLTGTQPALAQ-SAFAYQSTIKVYDEAGTAHTL 244 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN---NDMVVYTSD 223 V+ + +++ D K R + Sbjct: 245 TVYFDQVDPDSVTNEPNGRKQWEYIVTMDPAEDKRVIAGTAMNTTRAAGLLMTGTLTFDT 304 Query: 224 GTTLFETVPRD-----INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 L + + + + P+ +V+ G + Sbjct: 305 TGQLVDQTAFTPFGQYTDTTPPWNEPTPNPGPPVTTPADLVNWQPTQMSSNGLPMMVANF 364 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + A A G Sbjct: 365 SGLTDSSVVGSPTAQNFLMELDLGLRSTNATTPWTSTPNAAAIGTDASLLPGLTSSQRQP 424 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 Y + S + + Y + + + + Sbjct: 425 SATTSYAGSSSTQFQKQDGYTFGFLQNITVDRDGIMQGKYSNGVTLDLYQVTLVDFTSKQ 484 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L N S + IS + V+L E +I ++ + Sbjct: 485 NLRREGGNLFS--GTRDSGDPLPGPANSNGLGAISSNSLEQSNVDLAREFVEMITTQRGF 542 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 ++K+I TD ML+ ++ + Sbjct: 543 QSNSKVITTTDTMLEVVVNMKR 564 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/442 (6%), Positives = 90/442 (20%), Gaps = 17/442 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL A + ++ + NI N + + + Sbjct: 1 MSLTASMWTGVSGLLAHGERMNVLGNNIANVNTVGFKGSRMDFEDFLNQDTYSAAGVTQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V+ + + + + + F ++K ++ R Sbjct: 61 GRGVSIGAIFGDYSQGAFQTTNESTDLAIQGRGFFSVK-----PKGTEDTYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y + +L I+ ++ + + +A + +++++ Sbjct: 116 DADGYLVDPHGYVLQGWAIERSQNSLTSSAVTATSTTSKIKGSGVPVDIKLDGFTAEPQH 175 Query: 170 LTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + + + +D + + L + + ++ ++ Sbjct: 176 TQNITLNVNLDSNPGNDKSSSTTNPYFSLFETWNGQNPLTGTQPALAQSAFAYQSTIKVY 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + K ++ Sbjct: 236 DEAGTAHTLTVYFDQVDPDSVTNEPNGRKQWEYIVTMDPAEDKRVIAGTAMNTTRAAGLL 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + G ++ + + ++ + P S+ Sbjct: 296 MTGTLTFDTTGQLVDQTAFTPFGQYTDTTPPWNEPTPNPGPPVTTPADLVNWQPTQMSSN 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + S +V + + P + A Sbjct: 356 GLPMMVANFSGLTDSSVVGSPTAQNFLMELDLGLRSTNATTPWTSTPNAAAIGTDASLLP 415 Query: 409 GWLEKNRSDSHDLHMKSQVVFN 430 G R S Sbjct: 416 GLTSSQRQPSATTSYAGSSSTQ 437 >gi|298530010|ref|ZP_07017412.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509384|gb|EFI33288.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 755 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 118/411 (28%), Gaps = 8/411 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 G+ + +++ ++ + + I +L ++ S + ++ + + Sbjct: 348 GEDYINADYDSENNTLNISVENEDDDGNNIDELSFEFQNLSSKTASELGVTSYKEGQPFS 407 Query: 135 VQNFNTSAREVQKIRADADK--EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 N A +D + +++ + ELT D ++ S + +F+ Sbjct: 408 AMWHNWDATNDDDPISDNRYAYQSTMKVYDENGTSYELTNYFDPVEIDDPSGNKHWEFMT 467 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 + + S + + G L + + E + T + Sbjct: 468 TVNPEHDNREGMED-SEKRGVLMTGALTFNPGGELIDQSAYTLGTEVYDDDTGEPIAGGD 526 Query: 253 F---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 F + +S + P L + Q EM L + + Sbjct: 527 FASDLSNWSLSDFSDNGYPVFTPNFLGIEGQNFTGAEGAQNIEMNFGLRNQTGNWEAGSA 586 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 S F + + + QY S+ + L + Sbjct: 587 ESPAELTEFGNTDFNFDNIAEFEETRREAQASTQYSSSSTTLMQNQDGYTTGFLQNIEID 646 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 L Y + + +A + L + N E S + Sbjct: 647 RNGVLTGRYDNGQVMDLYALTLADFHNEQGLRKEGGNLFS--ETRSSGPAMTGLAGTRGL 704 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS + V+L E LI+ E+ + ++K I TD ML +++ + Sbjct: 705 GEISSNSLEMSNVDLATEFVKLIQTEKGFQANSKTIQTTDTMLGIIMQMKR 755 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 55/215 (25%), Gaps = 21/215 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------- 49 M L + + ++ +I NI N + Sbjct: 1 MGLSSSMYTGVSGLKGHGEKMGTIGNNISNVSTVGFKGSRMHFEDFMSQDINTGAGVGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + L + + A F + + + + R Sbjct: 61 GRGVGVGAVMNDFSQGSLESTNEATDVAIGGDGFFQV-----SARGTDENLYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVI-----DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 E Y + + +++ + A++ + E+Q D + Sbjct: 116 DEEGYLVDPNNNVVQGWEVREDPPGVADDDEIIQTETGVEIQGAPGDIRLDDFQSPPEQT 175 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 R + ++ ++ + ++++ D+ Sbjct: 176 RKVDKMVNLDSRSEARSSNASTPLTGDDELGTEAN 210 >gi|295687866|ref|YP_003591559.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] gi|295429769|gb|ADG08941.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] Length = 571 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 78/412 (18%), Positives = 155/412 (37%), Gaps = 8/412 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSE 58 MSL ++ + A A Q A N+ NADN +Y R+ TT + + V+ T Sbjct: 1 MSLTSILSSAGAALTTAQYQIAVSQTNVANADNASYSRKTVTTTATTQTLAVSTATVTRA 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 K + ++A G+ ++ ++ + + + ++ + +L S + + Sbjct: 61 ADAYLAKTVDKTAAADGRDAVIDTYLQSYDASLGSVDGGDDVSSLLTAFQTALSSLASSS 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + V + + S +Q +R+ A+ EI + + L + +ND I Sbjct: 121 TSATKASAVSAASSLASSIQSLSGD-IQSLRSQANLEIGETVDTINSTLETIKTLNDQIV 179 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 TAS D D D+R + +S ++G+ST ++N ++VY G L +++ Sbjct: 180 STTASGGDVSDLEDRRAAAVTTLSSLMGVSTYKTSDNRVMVYAPGGEQLLGASVAKLSYN 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 +S + + V + +++ GK+ L+ +RD V+ Q+ LD++A LI Sbjct: 240 PSSSLSADTVYPGSISGVTVNGKDITTSLTSGKLGGLISLRDDVLVGEQDALDQLASTLI 299 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + S L A + D T V ++ + + Sbjct: 300 SQVNAAANSGSASPPPNSLTSAIAVSGSDAFNA-----TGSVRVAVTNSSGAVVSTQDID 354 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 V +L + I+ S + + A V L + + G Sbjct: 355 LSAYATVDDLIAGLNSISGLNASISNGKLTIAAASSTHGVALADVGASIGGE 406 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 54/430 (12%), Positives = 103/430 (23%), Gaps = 3/430 (0%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + RS+ + + +S + + L D Sbjct: 144 GDIQSLRSQANLEIGETVDTINSTLETIKTLNDQIVSTTASGGDVSDLEDRRAAAVTTLS 203 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 SL S + D E+++ AD IS + + Sbjct: 204 SLMGVSTYKTSDNRVMVYAPGGEQLLGASVAKLSYNPSSSLSADTVYPGSISGVTVNGKD 263 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +T + K + ++D L +++ + N+ + T Sbjct: 264 ITTSLTSGKLGGLISLRDDVLVGEQDAL-DQLASTLISQVNAAANSGSASPPPNSLTSAI 322 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 V F S V ++ + A I L I S + + Sbjct: 323 AVSGSDAFNATGSVRVAVTNSSGAVVSTQDIDLSAYATVDDLIAGLNSI--SGLNASISN 380 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G S G+ G D+ + S Sbjct: 381 GKLTIAAASSTHGVALADVGASIGGEGVSGYFGFNDVFSGDTAVDIAVSSTLTSDASKFP 440 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + G +LL YA + Sbjct: 441 AATMDATSALAVGQIAIASGGTGAANAIASALSTSTSFTAAGNLTAGQSSLLTYAAGFVS 500 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + + +N VNL EEL+ L +Q Y + +L Sbjct: 501 TAATTIAGAASQAETSSDAYAAAVDRLANLTTVNLDEELAMLETYQQVYQANAQLTSMVQ 560 Query: 470 KMLQTLLEGV 479 + L+ V Sbjct: 561 DLFDVLMNMV 570 >gi|222100886|ref|YP_002535454.1| hypothetical protein CTN_1912 [Thermotoga neapolitana DSM 4359] gi|221573276|gb|ACM24088.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 759 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/441 (8%), Positives = 108/441 (24%), Gaps = 2/441 (0%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 M + VT T S + + +++ + + + ++ Sbjct: 321 TVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSSGNVIYSGTVDVSGGNFTISDSD 380 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + I+ T + S+ Sbjct: 381 ITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVIVRDSSGNEVYNGTTTVSNGSFT 440 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 IS+ V T + + + + + Sbjct: 441 ISDSDITSGNDYTVTFLSSSLTIAPGAELVIPTSGEPRFYEADNPTNFVQVDYTSPRYTT 500 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 +L F ++ + T+ SES +++ + + Sbjct: 501 AVQVYDSLGNEYTVYYEFIRLGNTTIGSESFKNAWIWRAYTASGEPVTLVDENGSTGVGG 560 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 ++ + + V + + + L + I+ + Sbjct: 561 NNYIAGLVEFDESGRPVQYRGLYYDSGSSSYALSSDELRTIQFDTGQNGDGVVTITADLS 620 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 Q+ + + + + + ++I + + +A N Sbjct: 621 GITQFSGDSTVNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPAG 680 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L+E + + S + + V+L EE + +I ++ + Sbjct: 681 LMEVGNSLYAV--SSNSGVPKIGAPGSGGRGTLIPGALEMSNVDLAEEFTKMIVAQRGFQ 738 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + ++I D++L L+ + Sbjct: 739 ANARVITTADQILNELVNIKR 759 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 32/446 (7%), Positives = 77/446 (17%), Gaps = 16/446 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ N + NI N + + Sbjct: 2 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRAPQESVG 61 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T Q + + + + N Sbjct: 62 GTNPMQIGLGSQVASIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + + + Sbjct: 122 DSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNRPIGDLVISAGMTMPAKKTSNVRFEG 181 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N T + D V +K + +G + + + + Sbjct: 182 NLNSNVGPGSFTITLTDDSGVDHDVRVWFEKTAGDLGTDPFSSSQRYTMRIDVNNDGTAD 241 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + E ++ I + S + D+ + N Sbjct: 242 VSGYAVFNEFGRVEEAGIYADSQTITANGSITGSTSLSDGTYQA---VVLDNSGNVVYNG 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +++ + + + D+ L + + + S Sbjct: 299 TVDVSNGSYTISDPNIVGGNDYTVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSS 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 N N Y GI T L + Sbjct: 359 GNVIYSGTVDVSGGNFTISDSDITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVI 418 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISES 435 + + ++ ++ IS+S Sbjct: 419 VRDSSGNEVYNGTTTVSNGSFTISDS 444 >gi|300716218|ref|YP_003741021.1| flagellar biosynthesis, hook protein [Erwinia billingiae Eb661] gi|299062054|emb|CAX59170.1| Flagellar biosynthesis, hook protein [Erwinia billingiae Eb661] Length = 414 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 52/476 (10%), Positives = 111/476 (23%), Gaps = 67/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + + V + ++ Sbjct: 2 AFSQAVSGLNAASSNLDVIGNNIANSATVGFKSATVSFADMFADSKVGLGVKVAAVTQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + S + F + + + N Sbjct: 62 NDGTTTSTSRGLDVAISQSGFFRMTDT------SGAVYYSRNGQFTLDANRNIVNADGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L VQ + + + + V N T Sbjct: 116 LTGYPATGTPP----------TVQTGANPVALNVPTTAMSAKATSAAALVANLNSTDSTP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K A D + + + ++T N+ + T ++ Sbjct: 166 TKDWATTNTDLSSIDVDTYNSKATMTTYDSLGNEHNINLYYVKT----GDNSWKMYPVDG 221 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T S + + S+ A +Q+ + + + + Sbjct: 222 TTGQSAAGAGANTDGSYNVTFNSSGQMTSPTATVQLATATLNGSAAGTFNLNLAGSQQQN 281 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 GN K Sbjct: 282 TGTSTFGNPT------------------------------------------QDGYKPGD 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ Y + + +A L N W N S + Sbjct: 300 LTSYQINNDGTVVGTYSNEQTQTLGQIALANFANPEGLKSEGNNV--WSATNSSGQALVG 357 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L +EL +I +++Y + + I D++L TL+ Sbjct: 358 LAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 413 >gi|296535149|ref|ZP_06897378.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296264524|gb|EFH10920.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 436 Score = 98.9 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 36/480 (7%), Positives = 118/480 (24%), Gaps = 46/480 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL A + + ++ N+ N+ Y R DT T Sbjct: 3 MSLNGSLYAATSGLGAQTAAITNVSNNVANSQTTGYKRVDTAFAEQLSQSTAR------- 55 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + ++ + ++ ++ N + Sbjct: 56 --LNGSSTVSAAPVATVSRGGDISQVENPLALAISGNGLFA-------------VSRPAG 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + ++ + + ++ + + Sbjct: 101 TDANGNTVFSPTQFYTRNGDFSKTAEGYLVNTSGYALEGWPVANGAVNRGQLGLIQVDEA 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 A + Q + + S + + + TL T D ++ Sbjct: 161 PY----APEATTQIGIGANLPASGTETSYSTQVPVYDNLGIARSVTLNWTKTGDYQWQVN 216 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + S + G+ +P G + ++ ++ N A + +G Sbjct: 217 VVGPDGTTSAGTATLNFGDGAGTGNGMPSGTLDSITNATGALAASGFNGQGSAATLTVGD 276 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + Q + + Sbjct: 277 LFGAGSQPVAISLGTFGSTQGVTQYAGATYQQN------------------SVTANGAAP 318 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + +++ Y + ++ P+ L + + + Sbjct: 319 GAYTGVGIKENGEVVVSYDNGKSRTIAQVPIVTFQNADGLQR--EDGQAFTATQAAGQFR 376 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ S V++ E S +I +++Y+ +++++ ++ ++ ++ Sbjct: 377 VLAAGEQGTGTLATSSIEASNVDITSEFSKMIVAQRAYSANSRVLSTVSGLMSETVDMLR 436 >gi|295687864|ref|YP_003591557.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295429767|gb|ADG08939.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 425 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/485 (8%), Positives = 122/485 (25%), Gaps = 65/485 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL A + A + S+ ++I NI N+ Y D + + Sbjct: 1 MSLSAALSTAVSGLTAQSRALSAISENIANSSTTAYKTTDVYFQALVSGGKGSSTSTSAV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-----PTHYISKLRDSLESYS 115 + + + + + + Y Sbjct: 61 TAKSSQAMSVQGTVTSTSVATNVAIQDAGFFVVTSDPAGAASEDMYTRNGSFETNADGYL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N L D V+ + + I + + + + Sbjct: 121 INTEGFYLMGWPTDAEGNVLASNTNDLTGLSAINLSSIGGTAKATTEIEMSANVPA---- 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + ++T ++ + + V + G T +T Sbjct: 177 ------------------------DAAVGAALTTSMQMIDSLGVSHTVGQTWTKTADNTW 212 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + G + ++ D V F + + A Sbjct: 213 ELTLSDPVLTSDGTT--QSGTINGGPYTVVFNTDGSLGSVTPALDFTVTGFSSGAADSAV 270 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L ++ T + ++ Sbjct: 271 SL----------------------------DIGEVGGTDGVTQYASTSSTIGLEDVQTEQ 302 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ + ++ + + P+A + L + + E + Sbjct: 303 DGALYGELSGISIDSDGLVTANFDNGISLAIYQIPIATFSNPNGLTLV--SGTTYDENSA 360 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + L++ + + S ++ E + +I +Q+Y+ +++++ M +L Sbjct: 361 AGQVHLNLPGEGGAGSLVASALEGSTTDIATEFNKMIIAQQAYSAASQVVSSASDMFDSL 420 Query: 476 LEGVK 480 ++ V+ Sbjct: 421 IQAVR 425 >gi|53717914|ref|YP_106900.1| flagellar hook protein FlgE [Burkholderia pseudomallei K96243] gi|53724565|ref|YP_104798.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|67641538|ref|ZP_00440315.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|76810959|ref|YP_331879.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1710b] gi|121599135|ref|YP_994291.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124384593|ref|YP_001028060.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126449658|ref|YP_001082867.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|126453793|ref|YP_001064564.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1106a] gi|167001537|ref|ZP_02267332.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|167717660|ref|ZP_02400896.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167736703|ref|ZP_02409477.1| flagellar hook protein FlgE [Burkholderia pseudomallei 14] gi|167813802|ref|ZP_02445482.1| flagellar hook protein FlgE [Burkholderia pseudomallei 91] gi|167822318|ref|ZP_02453789.1| flagellar hook protein FlgE [Burkholderia pseudomallei 9] gi|167843908|ref|ZP_02469416.1| flagellar hook protein FlgE [Burkholderia pseudomallei B7210] gi|167892410|ref|ZP_02479812.1| flagellar hook protein FlgE [Burkholderia pseudomallei 7894] gi|167900908|ref|ZP_02488113.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|167909127|ref|ZP_02496218.1| flagellar hook protein FlgE [Burkholderia pseudomallei 112] gi|167917164|ref|ZP_02504255.1| flagellar hook protein FlgE [Burkholderia pseudomallei BCC215] gi|217424944|ref|ZP_03456440.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|226199793|ref|ZP_03795344.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|242315744|ref|ZP_04814760.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|254182140|ref|ZP_04888737.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|254188070|ref|ZP_04894582.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|254196353|ref|ZP_04902777.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|254201896|ref|ZP_04908260.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|254207230|ref|ZP_04913581.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|254259636|ref|ZP_04950690.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] gi|254295814|ref|ZP_04963271.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|254359732|ref|ZP_04976003.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|52208328|emb|CAH34261.1| putative flagellar hook protein [Burkholderia pseudomallei K96243] gi|52427988|gb|AAU48581.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|76580412|gb|ABA49887.1| Flagella basal body rod protein [Burkholderia pseudomallei 1710b] gi|121227945|gb|ABM50463.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124292613|gb|ABN01882.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126227435|gb|ABN90975.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106a] gi|126242528|gb|ABO05621.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|147747790|gb|EDK54866.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|147752772|gb|EDK59838.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|148028946|gb|EDK86878.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|157805870|gb|EDO83040.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|157935750|gb|EDO91420.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|169653096|gb|EDS85789.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|184212678|gb|EDU09721.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|217391964|gb|EEC31990.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|225928144|gb|EEH24180.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|238522489|gb|EEP85933.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|242138983|gb|EES25385.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|243062738|gb|EES44924.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|254218325|gb|EET07709.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] Length = 413 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/469 (10%), Positives = 108/469 (23%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + + N + Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPI---------- 55 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + ++++ S +++ + ++ + S N Sbjct: 56 --------GIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQ 107 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + ++ +N A+ Sbjct: 108 RDK-------------------------------NGYIVNSQGLNLMGYAANANGVINTA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 I+ + N + + VP F + + + Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K + L + G+ + AG Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + QY + ++ Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + +Y + +A N L+ N ++E S + Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|186477697|ref|YP_001859167.1| flagellar basal body FlaE domain-containing protein [Burkholderia phymatum STM815] gi|184194156|gb|ACC72121.1| flagellar basal body FlaE domain protein [Burkholderia phymatum STM815] Length = 501 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 55/498 (11%), Positives = 120/498 (24%), Gaps = 31/498 (6%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66 + AS I NI NA+ + + N M Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKQGAAQFADMYANSVATAVNNQIGIGTRMSQVE 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + Y N L Sbjct: 66 QNFSQGTISTDDIALHVAINGSGFFQMSNNGALTYSRNGVFQLDKNGYITNADGLKLMGY 125 Query: 127 VIDNAEEVVQN-------------FNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + + + +A ++L ++ S ++ Sbjct: 126 AANANGIINTAGTVPLQVPTANIPPTATKTITAGLNLNAQDALKLGTPSVTFTTSTGSLT 185 Query: 174 ND--AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF--- 228 N+ +I T + + ++ G ST + + + +G T+ Sbjct: 186 NNGVSITDATQGTNANTYTITFSSPTAYTVTSSDGTSTTGTYSANSPIKLGNGETITLAG 245 Query: 229 --------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 P + F+ NS T + ++ D + K + Sbjct: 246 TPATGDSLTVAPTALAFDPTNSATYSYSTSVPVYDSLGGEQQVDMYFVKTSAGSWDVYAG 305 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ G+ +GN + F + Q ++ I Sbjct: 306 KDGNVSTTKIGTAKFDTSGNLVSTLDSSGNPTSTLFAFNFSIPNSDGSATPQNLTLKIGG 365 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Q+ S + + +Y + +A L Sbjct: 366 TTQFGSKDGTNSLTQDGFAAGQLTNFTVGTDGIITGNYSNGQTAALGQVALATFANQNGL 425 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + N + S + + + V+L EL LI +++Y Sbjct: 426 INLGNNQ--FQATAASGVAVVAAPGSTNHGSLQGGATENSNVDLTSELVNLITAQRNYQA 483 Query: 461 SNKLIMFTDKMLQTLLEG 478 + + I + QTL+ Sbjct: 484 NAQTIKTQQTVDQTLINL 501 >gi|149375034|ref|ZP_01892807.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] gi|149360923|gb|EDM49374.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] Length = 618 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/406 (12%), Positives = 118/406 (29%), Gaps = 7/406 (1%) Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 ++E + E + + ++ ++ + +++ + I+NA+ Sbjct: 216 SASATTTYEGMSEADLNAAIAAGNFSFDLAVGGVTVPVDTTGVTDAASLVSAINNAQAPT 275 Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + + ++ I + S+ E TV D + Sbjct: 276 ISASLTGGNLRLIDNRGNNVTAGFTSDGPNQAPETTVGTVR-PQADREITDIASTSGATN 334 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 + + I I+ + + TT+++++ + N + + Sbjct: 335 LTDSWNARNIEITNQFNPLDQRTYNHATSTTVYDSLGNSHEMTQFYVKQPA-PGNGVGVS 393 Query: 256 GVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 V G + Q R D + + + + + D ++ Sbjct: 394 EWSVYLQIDGEFVAGTDQNPYQARFDQDGELQSVNGDPNGEILISDWTPKDADGTPNGAD 453 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 PG + + QY SN + + +++ Sbjct: 454 GPPGPGDNITTPIPEPPTTSAFVLDLGNTTQYGSNFGVNDQRQNGYATGRLSGLDVSDQG 513 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 L Y + +++ +A N L W+E S + I Sbjct: 514 VLFARYTNGQSQSLGQVALASFNNTNGLSPVGE--TTWVETFESGQPIIGAPDTGTLGSI 571 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S V+L EL LI +++Y + K I +D + QT++ Sbjct: 572 KASSIEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTVINL 617 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/392 (7%), Positives = 82/392 (20%), Gaps = 10/392 (2%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLHAH--SSAIGQQ 77 NI NA + + + + + I Sbjct: 3 LDVTGNNIANASTVGFKSSQAQFGDLYASGFLSAGTNPIGDGVRVQDVKQNFGQGNISFT 62 Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + ++ + + + N + V D+ + Sbjct: 63 DNGLDLAINGDGFFVLNNGGEVRYSRAGQFGIDKDGFVTNNQNMRVQGFVADDDGNLSGI 122 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 E + + +++ R V D + + Sbjct: 123 RGDLQIETDNLAPRRTTNLRSDLNLDSRETVLERRVADMGDYTAPAGATGFPSETFEITY 182 Query: 198 LQKISEIIGI-----STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 + I + + V+ DG + T + E + + + + Sbjct: 183 ADGSVVSVPINAAGATDFSAADVVDVLNGQDGLSASATTTYEGMSEADLNAAIAAGNFSF 242 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + V+ + + I ++ P L LI + S+ Sbjct: 243 DLAVGGVTVPVDTTGVTDAASLVSAINNAQAPTISASLTGGNLRLIDNRGNNVTAGFTSD 302 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN--VKNLAG 370 + ++ R+ ++ + N A Sbjct: 303 GPNQAPETTVGTVRPQADREITDIASTSGATNLTDSWNARNIEITNQFNPLDQRTYNHAT 362 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + +S + V + E Sbjct: 363 STTVYDSLGNSHEMTQFYVKQPAPGNGVGVSE 394 >gi|94267501|ref|ZP_01290900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451978|gb|EAT02688.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1069 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/409 (10%), Positives = 107/409 (26%), Gaps = 5/409 (1%) Query: 72 SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 S + + N + E+ + L++ L T Sbjct: 666 SGVAADGTDPGDLVFTVGAAGMVTIENLMDKLETHFSAGGETLTVALTDGALVFTDSSGT 725 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 + SA++ Q + I + + + ++ T H+ + Sbjct: 726 NLQINLEYGSAQKAQPLGTTEFTRSGARIGGMTNVSTTKKELISPVRAFTTEDHENRPPV 785 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 + + G ST + G ++ P + + TV + Sbjct: 786 ITAGTTWDAVFDRHGNSTHEGQTIEFAGTNRHGASI---EPVTYTINRDDGSTVQDFLDE 842 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + + G+ + + + FQ V E + Sbjct: 843 VSTALDADAFIDGAGRLVIRERVSDDLDFESELSFQISDYSNPAVPPDPSYEFFGPVETN 902 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + L + QY ++ + + ++ Sbjct: 903 YHAIAGSAEEDGSRLGMTASRRFEAEAMATTQYANSSTTIFQDQDGFAAGFLQSVSVDTA 962 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + +Y + +A L + N + +S + Sbjct: 963 GIITGNYSNGQVLMRAQVALADFANLQGLHKVGGNI--FRATTQSGAPVTGQPGTNGLGE 1020 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ + V+L E +I ++ + ++K+I TD+ML L+ + Sbjct: 1021 IAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELINIKR 1069 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 41/444 (9%), Positives = 103/444 (23%), Gaps = 18/444 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + + + + NI N + Y S + Sbjct: 1 MSLSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAYNASRATFQDVLSQSVATSAGSAQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 VT + + + S+A + F MM + R Sbjct: 61 GRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFF----MMRGSGSAEADMFTRAGEFRF 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + +D ++ + + + I NL + Sbjct: 117 DTQGNLINPAGHFIQGWQVDKDSGQIEGTI-GDINIGRATPPVPTDRIDMIVNLDSRIPR 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 T + + + D + + + + +D+ +Y D TT Sbjct: 176 ETTEQRLYEAWNGTNMTGVNPSPPIDANNFEYTTAVKVYDSKGAAHDVTIYF-DRTTQEN 234 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + V S + + + + + Sbjct: 235 QWEFLVTCDPSSDLRVLEGSELQTYAPSDRYDYEEHKGAGALMYGTVDFNTAGAIEQISA 294 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + + ++ + F A+ + + Q I + + Sbjct: 295 WNVPPDGKVEPSLDTNRVRLDATDNYYSFRANFTGEEEKVDEQMIELNFGARFTGQFDEL 354 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 R + + L + D+ V ++ Y + Sbjct: 355 RQRLVTNNGAYSEAHATTPINRETLWRNVYDANGNQMSGGDVIHVSG-FDNGGYYQELTY 413 Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433 N L+ + Sbjct: 414 TAVANVRVGDFLNKLGDAFGGTAT 437 >gi|283834455|ref|ZP_06354196.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291070002|gb|EFE08111.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 400 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 107/474 (22%), Gaps = 75/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI N+ Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANSGTVGYKSMTTQFSAMYAGTQAMGVSVAGSA---Q 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Sbjct: 59 SISTGGSMVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFVTDKNG-----------Y 107 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + + + + +Q ++++ + I + Sbjct: 108 IVNASGDYLQGYPVDDSGTLQT-----------------GTVTDIQIKTGNIPAQATDSM 150 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D D + + S + + D +V + N++ V Sbjct: 151 TFTANFDASDETIDRTSVPFDANNSDTYTDSYTTTVYDSLGNEHSVSQYFTKTGDNTWEV 210 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + GV ++ Sbjct: 211 QYTFDGEAQSGVPATTLTFDPNTG------------------------------------ 234 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + D ++ QY S+ S + + N Sbjct: 235 ------KLTDPTTPQTITFTTDEAAPISMTVDYSDCTQYGSDFSVTTNSATGYASATQNG 288 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + +A L + W++ S + + Sbjct: 289 VQVDDDGKVYATYSNGERMLQGQVVLATFPDENGLQAV--SGTAWVQTGESGTPLIGTPG 346 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V++ EL L+ +++Y + K+I + ++ Q L + + Sbjct: 347 SGSCGTLSSGMLESSNVDITNELVNLMTAQRNYQANTKVISTSTQLDQALFQAM 400 >gi|134297198|ref|YP_001120933.1| flagellar hook protein FlgE [Burkholderia vietnamiensis G4] gi|134140355|gb|ABO56098.1| flagellar basal body FlaE domain protein [Burkholderia vietnamiensis G4] Length = 413 Score = 98.6 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLGSVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 KQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D V + + L+ + T + + Sbjct: 126 AADKNGVV----------------STAQTVPLQAPTSNIAPTPTTKIVGQFNLNSQDVVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + D S I + + + + +Y + Sbjct: 170 TKTPFNATDSATYNYSTAIQVYDSLGGSQAVNMYFVKSAAGAWEAYAGVQGGTTTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I + ++ G+ + + D L Sbjct: 230 KFDSSGAITSTTLPASATPTASLGQFQFSVPTTDGSSTPQALTL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E S + Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLINLGGNQYA--ETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|237810461|ref|YP_002894912.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] gi|237503327|gb|ACQ95645.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] Length = 413 Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + + N Sbjct: 6 GLSGLVGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN------------- 52 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + S + + Sbjct: 53 ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + Q + ++ +N A+ Sbjct: 91 QMSNNGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 I+ + N + + VP F + + + Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K + L + G+ + AG Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + QY + ++ Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + +Y + +A N L+ N ++E S + Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|91794995|ref|YP_564646.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91716997|gb|ABE56923.1| flagellar basal body FlaE [Shewanella denitrificans OS217] Length = 402 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 42/474 (8%), Positives = 96/474 (20%), Gaps = 73/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + +Q +I NI N+ + + Sbjct: 2 SFNIALSGLQSTTQDLNTISNNIANSSTVGFRGGRSEFAAIYNGGQAGGVSV-------- 53 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + D ++ + Sbjct: 54 -----------------MSTTQNFTKGGSLTYTGRQLDMGIQGDGFFVLKGTDGANMYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + +Q A A I+ + A Sbjct: 97 AGMFHQDSQGFVVDPVGNRLQGYGASATGRIQ---------TGNAIDLQIQTASLAAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + I ++ +++ +S Sbjct: 148 TDVALVSNLDARVAVIDPLVTPFDATKSDTFH---------------SSNTVSVYDSLGT 192 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ N + + G D Sbjct: 193 EHAMIQYYVKTGPNDWNVHFMMDGKDV----------------------TPAAGHKMTFD 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 L + QY +N + Sbjct: 231 SNGVLQTGKTLNLAIADPTLLKGASALSFDIAYDKSTQYAANYNNSSLRQDGFTSGELKG 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L + Y + +A + L + N W+ N + + S Sbjct: 291 VRLDDNGLVYGTYTNGQELLQGQVALANFSNPNGLKPVSNN--AWIASNEAGQAIMGAPS 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 349 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNSI 402 >gi|126441055|ref|YP_001057322.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|126220548|gb|ABN84054.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 668] Length = 413 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 48/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + + N Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN------------- 52 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + S + + Sbjct: 53 ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + Q + ++ +N A+ Sbjct: 91 QMSNNGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 I+ + N + + VP F + + + Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K + L + G+ + AG Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGQTPTDLGSVKFSTAGTITGTSTPAG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + QY + ++ Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + +Y + +A N L+ N ++E S + Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|126176156|ref|YP_001052305.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|304412508|ref|ZP_07394114.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307307167|ref|ZP_07586905.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|125999361|gb|ABN63436.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] gi|304349150|gb|EFM13562.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306910406|gb|EFN40837.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 395 Score = 98.2 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 46/475 (9%), Positives = 110/475 (23%), Gaps = 82/475 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI NA + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTSGFRGGRSEFASIYNG---------------- 45 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 GQ + + + + N + + Sbjct: 46 ---------GQAGGVGVMSTSQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGNDGGAMYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + +Q +A +I+ + + A Sbjct: 97 AGMFHKDSEGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + I+ + ++ T++++++ + + T Sbjct: 148 TKVGLVSNLDARVD------PIAVAFDPKDINTYHSIGTTSVYDSLGTEHVVTQYYVKTA 201 Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 +E +DG + I Sbjct: 202 PNEWTVNYTLDGTPLPDKTTLKFDSKGIL------------------------------- 230 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + A + + + QY + + Sbjct: 231 --------DPATTKQAFDLALPNGASNLKFDINFDKSTQYAAKYNNSSLSQDGYTSGELK 282 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 L L Y + ++ +A + L + N W+ N + Sbjct: 283 GVRLDDNGMLYGTYTNGQDQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGSP 340 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S ++ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 341 STGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395 >gi|223039214|ref|ZP_03609504.1| flagellar hook protein [Campylobacter rectus RM3267] gi|222879575|gb|EEF14666.1| flagellar hook protein [Campylobacter rectus RM3267] Length = 543 Score = 97.8 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/543 (8%), Positives = 124/543 (22%), Gaps = 65/543 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 ++ + S NI N +N Y Sbjct: 1 MVRSLYNGVSGVKTQSFSMDVWAHNIANINNVGYTASIPEFKSIFYQTSFKAGNNPTQDQ 60 Query: 49 -NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + L + + + F + M S + Sbjct: 61 VGLGATGMTTALSFYKQGPLMKTDNVLDMAIGGKGFFGVTNGMDTYYTRAGSFGVNKDRY 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +++ L + S V + + +L+I ++ Sbjct: 121 LVTNQGNYVLGTQNTLTQVTPSQGAIEAFGRINSKAAVTQAYTPSADTTDLDIGDIGSQG 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--- 224 + K SK LD + + +N G Sbjct: 181 KIKLPEFLYLPTKPTSKVTFKGNLDSSLKTEPATLPLGAATYTSNIDNASRTINLRGRVT 240 Query: 225 --TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 T+ D+ + ID S + A ++ + Sbjct: 241 ADATITRPRKGDLITVTATDANGKTAEFSAPIDENGNWSISQKFENDFDLAAAPNLQAKI 300 Query: 283 VPI-------------------------------FQNQLDEMARVLIGSFSEKDPIAGNS 311 Q + + NS Sbjct: 301 KTTKEAANQEKFVTELLNADGTKNTLELTLTKRVPQGANGAVWDAAATVKDASGAVISNS 360 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + + I ++ + + G + + + G Sbjct: 361 KGELNFGLDGRLAGSTLSAIDNNGSQIKLDFGAPAAAGQIYSGVTSTAQAKSISIAQDGV 420 Query: 372 -------------PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 +++ + + ++ + L + N + + Sbjct: 421 REGILKDYYTNDSGNILAQFTNGQVRSVAKVALYHFQNEQGLAKMGDNIYSQSANSGAAF 480 Query: 419 HDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ I+ + V+L + L+ +I +++Y+ + K I +++MLQ +E Sbjct: 481 FYKDAGGKSIYGAKIASNTLEQSNVDLAQALTEIIVTQKAYDANAKSITTSNEMLQRAIE 540 Query: 478 GVK 480 + Sbjct: 541 LKR 543 >gi|119947177|ref|YP_944857.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] gi|119865781|gb|ABM05258.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] Length = 398 Score = 97.8 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/474 (9%), Positives = 101/474 (21%), Gaps = 77/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + N ++Q +I NI N + + Sbjct: 2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSG---ITQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S R L + + D+ +++ + + + L Sbjct: 59 NFDRNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + + + D S + + + T Sbjct: 119 -------------YTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTANFDARATPVAS 165 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A D D ++ + + T + + D + + + Sbjct: 166 AAFDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPVI 225 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + D + + A+ E D Sbjct: 226 EFTTEGLLADTSTIPILVSIPALGANLIAV---------------------------EID 258 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + GI + + G + N Sbjct: 259 LTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFPNP 318 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L + P +G+ +T Sbjct: 319 TALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLT-------------------------- 352 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + T V+L EL L+ +++Y + K I D++ + L V Sbjct: 353 --------SNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFNAV 398 >gi|170288059|ref|YP_001738297.1| hypothetical protein TRQ2_0255 [Thermotoga sp. RQ2] gi|170175562|gb|ACB08614.1| protein of unknown function DUF1078 domain protein [Thermotoga sp. RQ2] Length = 750 Score = 97.8 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/447 (9%), Positives = 105/447 (23%), Gaps = 29/447 (6%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 N T + + L S + N + + Sbjct: 322 TVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSSGNVIYSGTVDVSGGNFTISDSD 381 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS----------AREVQKIRADADK 154 + + S+ +I+ + + + Sbjct: 382 ITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVIVRDSSGNEVYNGTTTVSNGSFT 441 Query: 155 EIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + +I++ + + I + + + S Sbjct: 442 ISDSDITSGNDYTVTFLSSSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSPRYTT 501 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + + T++ R N + + + D S G + Sbjct: 502 AVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGSGYVA 561 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L+ +S PI LD + G AG Sbjct: 562 GLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGDGVVT 605 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 I+ Q+ + + + + + ++I + + +A Sbjct: 606 ITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALAV 665 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L E + ++ S + + V+L EE + +I Sbjct: 666 FNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFTKMIV 723 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I D++L L+ + Sbjct: 724 AQRGFQANARVITTADQILNELVNIKR 750 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 29/446 (6%), Positives = 77/446 (17%), Gaps = 14/446 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + NI N + + + S+ Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSSQENVG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + + N Sbjct: 61 GTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + + + Sbjct: 121 DSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNRPIGDLVISAGMTMPAKKTSNVRFEG 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N T + D V +K + +G + + + + Sbjct: 181 NLNSNVGPGSFTITLTDDSGVDHDVRVWFEKTAGDLGTDPFSSSQRYTMRIDVNNDGTAD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + F + + + + + D+ + N Sbjct: 241 VSGYAV-FNEFGRIEEAGIYAESQVITASTDGSITGSTSLSDGTYQAVVLDNSGNVVYNG 299 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +++ + + + D+ L + + + S Sbjct: 300 TVDVSNGSYTISDPNIVGGNDYTVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSS 359 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 N N Y GI T L + Sbjct: 360 GNVIYSGTVDVSGGNFTISDSDITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVI 419 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISES 435 + + ++ ++ IS+S Sbjct: 420 VRDSSGNEVYNGTTTVSNGSFTISDS 445 >gi|313624712|gb|EFR94667.1| flagellar hook protein FlgE [Listeria innocua FSL J1-023] Length = 411 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + +I ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNIKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|289523565|ref|ZP_06440419.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503257|gb|EFD24421.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 618 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 46/443 (10%), Positives = 125/443 (28%), Gaps = 8/443 (1%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ-RLLQSFEALKEMMSADDHYNN 98 T I N T+ + + + S ++ + +S ++ Sbjct: 182 STTVAIGGNNYTLAISEGSASDFLNISIGGSSYSMSLAGINQNTGLPKLSDVSPVTIGSD 241 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S T + L+ K+ + + + Q N + Q + Sbjct: 242 SYTLHFDDETGELQ--LKDPGNNNIVWKQQISGIMDYQILNFEGDDNQTRPYLVEFTDSG 299 Query: 159 EISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + R + + + + + D + + + ++ +G+ + Sbjct: 300 DGNMVMRLWGQNSTLAWTSFEVVVPVNADGTFAVPTGGIGISGLAGNVGLRLNSTEDGKG 359 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + ++ V + + S +++ + G + Sbjct: 360 LSVSASNDGSTYEVAATL--NQRTSSIHSTKIDIYDSMGNPHTIEVAFEKIGANEWRWRA 417 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + I + + E A + L D LD Sbjct: 418 WLPTESGIALSNNTGVIEFGSDGKLESGGTATVNIGFSSLGAEDASIKLDFSGESFGKSP 477 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I Q+ S+ + + + ++A ++ Y + N +A + Sbjct: 478 IDGVTQFGSSFTTKAYYQDGYQMGVLQDFSIASDGTVMGIYSNGRNSALYTLSLALFSNP 537 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L + ++ S + + ++ V+L EE S LI ++ Sbjct: 538 SGLEKI--GMTAFIPTANSGLPQVVTPKEGGAGSLAGGNLEMANVDLAEEFSRLIIAQRG 595 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + + ++I +D++L L+ + Sbjct: 596 FQANARVITTSDQVLDELINLKR 618 Score = 50.0 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 23/385 (5%), Positives = 78/385 (20%), Gaps = 30/385 (7%) Query: 20 QFASIVRNIENADNKNYVRRDTMTTI--------------SPENVTVVTQRSENKNMFDK 65 + NI N + + + + V + + Sbjct: 1 MLDVVGNNIANVNTMGFKKSTVTFQDLLYETSKGATAPRENIGGVNPMQIGLGTTVAAVE 60 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 +H+ + + + + Sbjct: 61 TIHSQ-GPLQYTGNRTDVAIQGDGYYVLNDGAQNVYSRAGNFVLDGNGNIVQSGTGYTLM 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS----------ELTVVND 175 + + ++ + +++ + + + + + N Sbjct: 120 GYKMSPDPQNPTQYVRGTQLVALNIPVGQKLSAKGTEVLGLQCNLDSRVDTYLPMGITNP 179 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A + + ++ IG S+ + + T L + Sbjct: 180 NFSTTVAIGGNNYTLAISEGSASDFLNISIGGSSYSMSLAGINQNTG----LPKLSDVSP 235 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +SYT+ + + +N + QI + Q + + Sbjct: 236 VTIGSDSYTLHFDDETGELQLKDPGNNNIVWKQQISGIMDYQILNFEGDDNQTRPYLVEF 295 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + + + + + ++ + N + Sbjct: 296 TDSGDGNMVMRLW-GQNSTLAWTSFEVVVPVNADGTFAVPTGGIGISGLAGNVGLRLNST 354 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCD 380 K + N ++ Sbjct: 355 EDGKGLSVSASNDGSTYEVAATLNQ 379 >gi|160901599|ref|YP_001567180.1| hypothetical protein Pmob_0108 [Petrotoga mobilis SJ95] gi|160359243|gb|ABX30857.1| protein of unknown function DUF1078 domain protein [Petrotoga mobilis SJ95] Length = 702 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 47/435 (10%), Positives = 105/435 (24%), Gaps = 37/435 (8%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + R + I L + P + Sbjct: 305 AGTATLTGSIRVTDSAGEAVYYDPEDIDISFDASGNPTITL--NIDGTPVNFTGPASTVG 362 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + L + + L + A + ++ +R I Sbjct: 363 EF-NDLLTTGITSGDYTLTGLRLTGASDADTIDGQGFTGLKSVREMIQPPSGGAIRFTDL 421 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + I + + D L + + + I N DGT Sbjct: 422 NNPTNFSEANYISPSVTTSTVVY------DSLGNPYNTYLKFTKIDANTWYWKAELEDGT 475 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L++ + ++E F +++ Q P G I + D Sbjct: 476 PLYK------STADGQLLDDSAEGVIAFDSNGNIAATQWKINPDGTIDQTIGDGDDGAAG 529 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 F E+ L S + +S Q+ Sbjct: 530 FWFDPAELGAALNPSVDPQSAAGAGP--------------------VNVSINFQELSQFF 569 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + S + + + +I + + +A N L Sbjct: 570 AENSIAVTEQDGNAQGTLESFAINTNGQIIGSFTNGLTAPLGQVALATFNNPEGLSATGN 629 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + S + + I+ V+L EE + +I ++ + +++ I Sbjct: 630 SMYAM--SSNSGLPQIGVSGVGGRGSINPGALEMSNVDLAEEFTNMIIAQRGFQANSRSI 687 Query: 466 MFTDKMLQTLLEGVK 480 D +L L+ + Sbjct: 688 TTADAILNELVNIKR 702 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/416 (8%), Positives = 91/416 (21%), Gaps = 33/416 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L N Q + NI N + Y + Sbjct: 1 MLRSMYSGITGLRNFQDQLDIVANNIANVNTVGYKGSRATFQTTLFQTLSAGNAPQNQLG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + ++ L S + + E Sbjct: 61 GTNPMQIGLGSQLASIDKLMTQGSPMSTGKA-TDLMIQGEGFFILSDGIGQYYTRAGNFT 119 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + + + + ++ + + I+ + + + + ++ R Sbjct: 120 RDYNGFFVDPASGMKLQGWTAKIDQEGNRTIDTNDPIGDIQISSGQVMAAKQTSFVRLAH 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L K + + + + +SE + F Sbjct: 180 NLNAGAGIQDTTIVVKSTTGENIPVKFSFKRDMSEENKDKNVYN----WTASVVGSEYKF 235 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 N N + E + V+ ++ ++ I +V + + Sbjct: 236 AVDDGSGNLTSTNQISGKVELDDTGNVISWVNYDEDGDPLAESKISIYDINGEIVDQYGD 295 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + L + + D + E I ++ NP Sbjct: 296 SVPVDINAGA--------------GTATLTGSIRVTDSAGEAVYYDPEDIDISFDASGNP 341 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + F + + DL+ S + + G + T+ Sbjct: 342 TITLNIDGTPVNFTGPASTVGEFNDLLTTGITSGDYTLTGLRLTGASDADTIDGQG 397 >gi|153011508|ref|YP_001372722.1| flagellar hook protein FlgE [Ochrobactrum anthropi ATCC 49188] gi|151563396|gb|ABS16893.1| flagellar basal body FlaE domain protein [Ochrobactrum anthropi ATCC 49188] Length = 426 Score = 97.8 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 48/481 (9%), Positives = 109/481 (22%), Gaps = 85/481 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 30 MSLYGMMRTGVSGMNAQANRLSAVADNIANASTVGYKRAETQFSSLVLPSTGGQYNSGSV 89 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119 + + I + S N + Sbjct: 90 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGADGSTFLTRAGSFVPDKNGNLVNSA 149 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L LT+ I Sbjct: 150 GYYLLGAG-----------------------------------PNDPAGALTMAGLNIIN 174 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ + ++ I + + ++ Y G + V Sbjct: 175 VNSAALPPEASTSGNFTVNLPSTDQIPAAGEFNHKTSLISYNDKGEKITLDVYFTKTGAD 234 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S TV + ++ + G + + + + + Q + Sbjct: 235 EWSVTVKNAADDAVVGGPTTLTFDPTTGDMTSAGGVA----VDLGPYGGQNLNLNLGAST 290 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + Q + N V Sbjct: 291 QRAGDYT----------------------------------ISQAQINGQAPSAVKGVDV 316 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 +V + D + ++ NV L R Sbjct: 317 ANDGSVVAIYENGTQKVLARIPLANVASPDRMTVVSGNVFLPS------ADSGDVRLGFP 370 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +V+ + ES ++ +EL+ +I+ ++SY ++K+ +++ L+ Sbjct: 371 QSDGMGKVMSGTLEES-----NADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVNLK 425 Query: 480 K 480 + Sbjct: 426 R 426 >gi|218133669|ref|ZP_03462473.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC 43243] gi|217991044|gb|EEC57050.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC 43243] Length = 420 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/466 (10%), Positives = 112/466 (24%), Gaps = 52/466 (11%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80 I NI N + + + + E TQ + N ++ IG + Sbjct: 1 MDVIGNNIANVNTIAFK---SSSVSFSEVFYQTTQVASGPNATTGKGGQNAKQIGLGTSV 57 Query: 81 QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 S + A +N +S +S N + + Sbjct: 58 GSISTKVDTEGASQRTDNPFDVKLSGSGNSFFIVRSNGNTYFTRAGDFTYDASGALVTQS 117 Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 A + + D + ++ + L V +D + + + Sbjct: 118 GANVMGWVTNDQGEIVKDVVQPL-------YVKSDEFTYTMPEQTTNLKVSGNINSSSGN 170 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 ++ G S + + S L I +++ Y +E + +G Sbjct: 171 FAKGSGTSGADGDQKGETMTLSFYDNLGYRYQATIAVTQVDKYNYHTEVTGVTKEGKAAD 230 Query: 261 SNQGSAV------PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G + D + + + + S I Sbjct: 231 LTVTFDHDISFNPTTGLLDGTDSSLDFTITGGADADSFVKDTIAVDISNLKSIG------ 284 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + ++ G + + + Sbjct: 285 -----------------------------DETKFEYIDVAGKGKAVGKMSSVGIQDDGRI 315 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 I Y + L + N N + + + Sbjct: 316 IASYSNGDTVVIGQIATQSFTNAAGLEKVGTNMYAAT-LNSGEFDGVGEDITSAGGSMVS 374 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E + +I ++ + ++++I +D ML+ L+ + Sbjct: 375 GTIEMSNVDLASEFTDMITTQRGFQANSRIITVSDTMLEELINLKR 420 >gi|91785634|ref|YP_560840.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] gi|91689588|gb|ABE32788.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] Length = 503 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70 I NI NA+ + N + + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119 + A+ F L S N + + + N + Sbjct: 77 NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + N + + + + + Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPAVTPTLVTGSTLTTPGATITNTA 196 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + + S + +G T+ Sbjct: 197 SGTNNDSYTVNFTSPTTYTVTDTTLGTTSASATYTAGTAISLGNGQTITFNGTPATGDSV 256 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289 + T + + +S G + Sbjct: 257 AIAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWNVYAGTSTGTAQL 316 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G+ +G + P + + Q ++ I QY Sbjct: 317 IGHANFNSSGTLLGTTDASGTATTTPFAYNFQIPTTDGSSTPQNLTLNIAGTTQYGGKDG 376 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + L +Y + +A + L+ N Sbjct: 377 VNSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--E 434 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + ++S + + V+L EL LI +++Y + + I Sbjct: 435 FQQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQ 494 Query: 470 KMLQTLLEG 478 + QTL+ Sbjct: 495 TVDQTLINL 503 >gi|221199739|ref|ZP_03572782.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] gi|221208656|ref|ZP_03581656.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221171467|gb|EEE03914.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221179978|gb|EEE12382.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] Length = 413 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/472 (10%), Positives = 95/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T + + Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S I + + + + +Y + N Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKTAAGTWEAYAGVQGGTTNDLGTI 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I G S G+ + + D Sbjct: 230 QFDSSGAISGTTTGSPATPTAALGQFQFTVPNTDGSATP--------------------- 268 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY Sbjct: 269 -------------------------QTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L +Y + +A N L+ N E S + + Sbjct: 304 TIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETAASGVPQISVPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|167579488|ref|ZP_02372362.1| flagellar hook protein FlgE [Burkholderia thailandensis TXDOH] Length = 413 Score = 97.4 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 41/472 (8%), Positives = 96/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66 + AS I NI NA+ + + N + Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T ++ + Sbjct: 126 QADKNGVI----------------NTAQTVPLQAPTNNIAPTATTKISGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + + D + + + + + +Y + + Sbjct: 170 TNTPFNYADSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I + + G+ + + D +L Sbjct: 230 TFDTSGAIKSTTLPGSTTPTTTLGQFQFTIPNTDGSATPQALKL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + +Y + +A N L+ N ++E S + Sbjct: 304 SIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQ--YVETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|224370779|ref|YP_002604943.1| FlgE [Desulfobacterium autotrophicum HRM2] gi|223693496|gb|ACN16779.1| FlgE [Desulfobacterium autotrophicum HRM2] Length = 901 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 2/151 (1%) Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + QY + + + ++A + Y + Sbjct: 753 YDGINFINDSLSSTQYARSSNTVYQDADGYSAGDLQGVDVASDGIMTGVYSNGQLIPLFR 812 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N L N E S S + + IS + V++ EE Sbjct: 813 VGLAKFLNNNGLSNSGGNLFS--ETRDSGSAITNKPGENGLGTISPNSLEMSNVDISEEF 870 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I ++ + ++K I D+M+QT++ Sbjct: 871 VKMITTQRGFQANSKTITTVDEMMQTVINMK 901 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 30/415 (7%), Positives = 90/415 (21%), Gaps = 19/415 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53 MSL + + N + NI N + + + + + Sbjct: 1 MSLSSSLFTGTSGLTNMGNAMQVVGNNISNVNTVGFKKGRSTFADTLSQSVATQSGTDQV 60 Query: 54 ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + +++ + ++ F +++ + N+ Sbjct: 61 GRGMSIGAVDQSFDTGSFESTGNSTDLSIGGDGFFVVRQ-----SNSENNFYTRAGNFHF 115 Query: 110 SLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 N ++ +D E++ + + + + Sbjct: 116 DKSGQLVNPESYLVQGWALDEDTGEDIGAINDIVLNAFTSSPKQSSTVSMITNLDSDAES 175 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + + N +T + + + ++ Sbjct: 176 QTVVLSNSWDSGETTYMDSTNYEYQSVVKVYDALGSTHDVTVYYDKKTGTDWEYVVTCDP 235 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIF 286 E + + G ++ G ++A + + Sbjct: 236 SEDNRNLVESTDSKGLLARGTISFSESSGDILKVTMEEFTGRIGNVQANGVNNEDAINFE 295 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + ++ MA G E D + + L + Sbjct: 296 IDNVERMALDGYGFEFEFDGTQWDFATEGLPAAYANAQILYSDDQTINLTLDNTLDLESD 355 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 L + F +++ + +G + IN T+ Sbjct: 356 LRIKLDQPAVATDSFGFDINDPSGLHIQGIEGTTYLGDTANDNTTLEINAPETMT 410 >gi|167568107|ref|ZP_02361023.1| flagellar hook protein FlgE [Burkholderia oklahomensis EO147] gi|167574225|ref|ZP_02367099.1| flagellar hook protein FlgE [Burkholderia oklahomensis C6786] Length = 413 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + N Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFADMYANSVASAVN------------- 52 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + S + + Sbjct: 53 ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + Q + ++ +N A+ Sbjct: 91 QMSNNGVVTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAADANGVINSA 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 I+ + N + + VP F + + + Sbjct: 137 ATVPLQAPTTNIAPTATSKITGQFNLNS----------QDAVPATTPFNYSDPTSYNYTT 186 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K + L + G+ + AG Sbjct: 187 SVQAFDSLGGSQNVNLYFVKSSTTGQWEAYAGPSGQTPTDLGSVKFNTAGTITSTSTPAG 246 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 G F Q ++ + QY + + ++ Sbjct: 247 APTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLTQNGFASGVLTTFSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 L +Y + +A N L+ N ++E S + Sbjct: 307 ADGKLTGNYSNGQTSTLGQIVLANFNNPNGLVSVGNNQ--YVETAASGVPQISAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|290893994|ref|ZP_06556969.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] gi|290556440|gb|EFD89979.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] Length = 411 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|34498340|ref|NP_902555.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34104194|gb|AAQ60553.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 416 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 60/473 (12%), Positives = 122/473 (25%), Gaps = 58/473 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + N AS Q SI N+ NA+ + T T Sbjct: 2 GFQQGLSGINAASVQLDSIGNNVANANTVGFKSSRTEFGDLYAQSIFGT----------- 50 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 A S A+ MSA + N + ++ + ++ + Sbjct: 51 -------AANSPGNGVSVLAVTANMSAGNTENTGRSLDLAINNNGFFIMNQPNGTQTYSR 103 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 N+ +Q + + ++ N I T S Sbjct: 104 DGQFQVNSQGYLVNSYGAYLQGYGVNTSGQPQVGPLQ-----------NLQITNTTISPQ 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + + +++ V + T +++++ S Sbjct: 153 ATSQISWPVQL---NSNATVPVNSPVNPTDPTTYNWPSPTVVYDSLGNSHQVTLYYSLAS 209 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + + V + G + + Sbjct: 210 TSATGNTWTVTPYVDGAPATIPGGGS------------------------GNTNFSVKFN 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + P + Q ++ + + Q N + S L Sbjct: 246 NNGSLANTTPANVNLTFNTTNGSSTPQTVAINLTGSNQIAQNYGTGTITQNGSAPGLLTG 305 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++A + + +S K +A LL N W + S ++ Sbjct: 306 VSIASNGVVQATFSNSQTKTLGQVALATFVNPQGLLNLGGNQ--WQQSGNSGPATVNQPG 363 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ VNL EL +I ++ Y + + I D ++QTLL Sbjct: 364 TGNAGTLTAGSVEDSNVNLTNELVNMITAQRYYQANAQTIKTQDTLIQTLLNI 416 >gi|323495371|ref|ZP_08100448.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] gi|323310294|gb|EGA63481.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] Length = 568 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 42/340 (12%), Positives = 100/340 (29%), Gaps = 3/340 (0%) Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ ++ + K + + S+ + I + ++ R V Sbjct: 228 DEKIPQLMDELGKLATSFSYEVNKLQSQGLDLRGNIGGLIFTDVNSEVVAKSRVVTSSNS 287 Query: 202 SEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 + + T + + + G + + +++ + I I + Sbjct: 288 EAELAVFIEDTSQLIGGEYSLQYTGGDYYITRPSGEQFIVPVVDNSISLDGIRIDIRQDL 347 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 S + P A +Q+ + Q E + ++ + Sbjct: 348 ESGERVLLRPTRSGAAQMQMETNDPSDIAAQSYEASTTFAQGKAKFSIAQAGDLREFEVI 407 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 I+ K +G + ++ L N K A Sbjct: 408 ISPDGKQFAVTDTKGNVLLQPQAYPPSGAVTVQGTSFELTDGALPNDKFTANLVPSEGDN 467 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + I + T+L+ N + S + L S++ E ++ Sbjct: 468 GNLLKMQNIQTDKKLNDGESTILDIYHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVAS 527 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 GVNL EE + ++K +Q+Y S++++ + T+L Sbjct: 528 ISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 567 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 108/293 (36%), Gaps = 7/293 (2%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V R L+ ++ + + + M + +++ Sbjct: 1 MGVHVEKVRRSWDQFAVNELNVSTTNYAHKVDDEGNLEMLSSMLSSVASKK-IPENLNEW 59 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 D ++S + + ++ K V++ A + QN N +++ +K+++L I + + Sbjct: 60 FDGVKSLADSPNDVGARKVVLEKANLITQNLNDFHETIRRQSDVTNKKLDLGIERVNQLA 119 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTT 226 E+ ++ + +D +D + L+ ++SE ++ R N ++ +G T Sbjct: 120 LEIRDLHRLMMRTP---GPHNDLMDTHEKLVAELSEYTKVTVTPRKNAEGFNIHIGNGHT 176 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L + ++ Y + I+G + + + GKI A+L +RD +P Sbjct: 177 LVSGTEAS-ELKMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKIGAMLSMRDEKIPQL 234 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 ++L ++A ++ + G I + + ++ + Sbjct: 235 MDELGKLATSFSYEVNKLQSQGLDLRGNIGGLIFTDVNSEVVAKSRVVTSSNS 287 >gi|83719411|ref|YP_440801.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|167617585|ref|ZP_02386216.1| flagellar hook protein FlgE [Burkholderia thailandensis Bt4] gi|257140548|ref|ZP_05588810.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|83653236|gb|ABC37299.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] Length = 413 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 41/472 (8%), Positives = 95/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66 + AS I NI NA+ + + N + Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T + + Sbjct: 126 QADKNGVI----------------NPAQTVPLQAPTNNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + + D + + + + + +Y + + Sbjct: 170 TNTPFNYTDSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I + + G+ + + D +L Sbjct: 230 TFDTSGAIKSTTLPGSTTPTTTLGQFQFSIPNTDGSATPQALKL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAQDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + +Y + +A N L+ N ++E S + Sbjct: 304 SIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQ--YVETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|46906948|ref|YP_013337.1| flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47091659|ref|ZP_00229455.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217965205|ref|YP_002350883.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|226223328|ref|YP_002757435.1| flagellar hook protein FlgE [Listeria monocytogenes Clip81459] gi|254824023|ref|ZP_05229024.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|254853099|ref|ZP_05242447.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|254932023|ref|ZP_05265382.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|300764509|ref|ZP_07074502.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|46880214|gb|AAT03514.1| putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47019978|gb|EAL10715.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217334475|gb|ACK40269.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|225875790|emb|CAS04493.1| Putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606448|gb|EEW19056.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|293583575|gb|EFF95607.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|293593251|gb|EFG01012.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|300514863|gb|EFK41917.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|307570236|emb|CAR83415.1| flagellar hook protein [Listeria monocytogenes L99] gi|332311122|gb|EGJ24217.1| Flagellar hook protein FlgE [Listeria monocytogenes str. Scott A] Length = 411 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|254830312|ref|ZP_05234967.1| flagellar hook protein FlgE [Listeria monocytogenes 10403S] Length = 411 Score = 97.4 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|307731363|ref|YP_003908587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] gi|307585898|gb|ADN59296.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] Length = 502 Score = 97.0 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 49/488 (10%), Positives = 104/488 (21%), Gaps = 32/488 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70 I NI NA+ + N + + + Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITST 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS----KNLSEDILGKT 126 + A+ F L S N + + + S I+ Sbjct: 77 NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 N A + + + L + + T + Sbjct: 137 QTVPLSVPTANIAPKATTNISAGLNLNAQDPLMLGTPSVTANASNTGTLTTPGATITNTA 196 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + D V + T + + L N + Sbjct: 197 SGTNNDNYTVTFTSATTYTVTDTTLGTSTTGTYNAGSPIQLGNGQTVTFNGVPATGDSYA 256 Query: 247 SESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 P+ + S + + V + Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDTLGGSQTVNMYFAKTSAGTWDVYAGVSTGTATLV 316 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 G+ +G + P +F + Q ++ I QY Sbjct: 317 GHANFNSSGTLLGTTDASGTATTTPYVFNFSVPTTDGSATPQALTLNIAGTTQYGGKNGV 376 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + L +Y + +A + L+ N + Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIALANFSNQNGLVNLGNNV--F 434 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + ++S + + V+L +L LI +++Y + + I Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSQLVDLITAQRNYQANAQTIKTQQT 494 Query: 471 MLQTLLEG 478 + QTL+ Sbjct: 495 VDQTLINL 502 >gi|16799780|ref|NP_470048.1| flagellar hook protein FlgE [Listeria innocua Clip11262] gi|16802739|ref|NP_464224.1| flagellar hook protein FlgE [Listeria monocytogenes EGD-e] gi|47095263|ref|ZP_00232874.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116872086|ref|YP_848867.1| flagellar hook protein FlgE [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498779|ref|ZP_03667128.1| flagellar hook protein FlgE [Listeria monocytogenes Finland 1988] gi|224501998|ref|ZP_03670305.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-561] gi|254829354|ref|ZP_05234041.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|254900067|ref|ZP_05259991.1| flagellar hook protein FlgE [Listeria monocytogenes J0161] gi|254911380|ref|ZP_05261392.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935707|ref|ZP_05267404.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|255027496|ref|ZP_05299482.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-003] gi|16410086|emb|CAC98775.1| lmo0697 [Listeria monocytogenes EGD-e] gi|16413157|emb|CAC95937.1| lin0705 [Listeria innocua Clip11262] gi|47016334|gb|EAL07256.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116740964|emb|CAK20084.1| flagellar hook protein FlgE, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601767|gb|EEW15092.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|258608290|gb|EEW20898.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|293589317|gb|EFF97651.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313620066|gb|EFR91579.1| flagellar hook protein FlgE [Listeria innocua FSL S4-378] Length = 411 Score = 97.0 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|289666054|ref|ZP_06487635.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 223 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 82/226 (36%), Gaps = 14/226 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 ++ + + + +++ N+ N + + Y R+ + Sbjct: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAYVGNGAKITD 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + + L S + + ++ + S DS + Sbjct: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S N S ++++D+ + F ++ + + + + + + R ++ +N Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 I ++++ A D LDQRD L+ K+ G + ++++ M V+ Sbjct: 180 GTI--GNSAQNAAPDMLDQRDALVTKLVGYTGGTAVIQDGGFMNVF 223 >gi|21672610|ref|NP_660677.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008451|sp|Q8K9K0|FLGK_BUCAP RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|21623241|gb|AAM67888.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 544 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 56/547 (10%), Positives = 163/547 (29%), Gaps = 80/547 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENA--------DNKNYVRRDTMTTISPENVTVVT 54 + ++ + + I N+ + +V + V + Sbjct: 1 MSSILTSTVTGIDAIKILINNTADKIINSKYKDEIKHNV--FVENTVDESNFNAGVKIKK 58 Query: 55 QRSENKNMFDKVLHAHS-SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + + S +Q ++ + L+++ + I++L S+E+ Sbjct: 59 IYDDYNDFLKEEKRKISERVQDEQTKIEEYLKLEDLFGEKSNIFTLL---INQLYSSIEN 115 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 N ++ + + +N ++ ++ + D + I+ +I ++++ Sbjct: 116 DIVNNHGNVFNENIENNLNTIIHELKNFDEKLSFLERDVKESIKEKIKQANILINKIYDT 175 Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 N I+F ++ F+D+RD L+ ++++IIG+ I N+ V ++G + + Sbjct: 176 NIDIRFFPTAQLPNRIDSFIDKRDKLIDELNDIIGVKVIK-ENSTFKVCLNNGMCIIDDY 234 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + S F D +P + ALL R + +N++ Sbjct: 235 NKKNLMTLTSDTDDKYISVGYFDDNEQRLKKIEHMIPSASLGALLTFRREDLQNAKNKIG 294 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333 ++ S + + + G + Q Sbjct: 295 QLTINFADSINSVHTLGYDILGNIGKQVFKISNPEIISSSQNQSYLPTSIKWVDTADAQD 354 Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + + N +++ G K + + Sbjct: 355 TNYIVFLKNNHWTVTRLRDHSVVEPDIYQQDNNTYITFDGIEFKIEGNDAEGNMYMIKPY 414 Query: 376 NHYCDSFNKNFIFDPVAGINTN--------------------------VTLLEYARNSIG 409 + + I + + I+++ TL E + Sbjct: 415 SKTLNELELLIIKNDLFSISSSDDLNQKNRNNAIKIQHLHQEKIVNKKETLYESYLRFLK 474 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + +D + + + ++ + ++ E L ++ Y + K++ + Sbjct: 475 SISYKCNDLEEKVPFKRNMIEILNNKKLSESD-DMYENYQNLNYEQKCYLANVKVLKMAE 533 Query: 470 KMLQTLL 476 + ++ Sbjct: 534 TIFDEIV 540 >gi|221215571|ref|ZP_03588534.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] gi|221164559|gb|EED97042.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] Length = 413 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 46/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T + + Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D S I + + + + +Y + Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKTAAGTWEAYAGVQGGTTKDLGTI 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I S G+ + + D Sbjct: 230 QFDSSGAISSTTTGSPATPTAALGQFQFTVPNTDGSATP--------------------- 268 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 Q ++ + QY Sbjct: 269 -------------------------QTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L +Y + +A N L+ N E S + + Sbjct: 304 TIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETPASGVPQISVPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|284801027|ref|YP_003412892.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284994169|ref|YP_003415937.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] gi|284056589|gb|ADB67530.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284059636|gb|ADB70575.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] Length = 411 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 120/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L + ++ + + S Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGELTNPDALKNIQINSTVNGKQVNMSLNLS 273 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 N Sbjct: 274 GLTNYGTNQ--------------------------------------VFSPTSDGKGAAT 295 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y D VA + L++ ++ S Sbjct: 296 VKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGNG--EYVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|315281358|ref|ZP_07869998.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] gi|313614997|gb|EFR88501.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] Length = 411 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 49/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + +L S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YLPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|167835111|ref|ZP_02461994.1| flagellar hook protein FlgE [Burkholderia thailandensis MSMB43] Length = 413 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 94/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66 + AS I NI NA+ + + N + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLSLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 D + + + + L+ + T ++ + Sbjct: 126 QADKNGVI----------------NTAQTVPLQAPTNNMAPTATTRISGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D D + + + + + +Y + + Sbjct: 170 TKTPFDYADSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + I ++ + G+ + + D L Sbjct: 230 TFDTSGAIKSTTLAGSTTPTTTLGQFQFSIPNTDGSATPQALTL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAPDGFASGTLTTF 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L +Y + +A N L+ N ++E S + Sbjct: 304 TIGNDGKLTGNYSNGQTATLGQIVLANFNNPNGLVNIGNNQ--YVETAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQAVDQTLINL 413 >gi|120554033|ref|YP_958384.1| hypothetical protein Maqu_1105 [Marinobacter aquaeolei VT8] gi|120323882|gb|ABM18197.1| protein of unknown function DUF1078 domain protein [Marinobacter aquaeolei VT8] Length = 637 Score = 97.0 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 42/418 (10%), Positives = 104/418 (24%), Gaps = 6/418 (1%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +S G ++P + SLE ++ +++ Sbjct: 223 VTATARTAASLTGLTD--SDVSGATNFRLEIRIDGSAPIPLNLENVSSLEDVAEAINDTS 280 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ + + + + + Sbjct: 281 DNAISASVVDDDEDPSTPDVLRIIHSGGQPLEVAYGDAPTGTPLTNNQQYDGEVFVTTDR 340 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + ++ + + TT+F+++ + Sbjct: 341 NVEQVTTDSGSNAFEVAFNATPFTVTNEFNPIDQRTYNHATSTTIFDSLGNSHELTQFYV 400 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + G V + D + D ++I + Sbjct: 401 KEPSPGNGVGQSQWSIYLQIDGELVGGTDQTPYTALFDQDGQLESINGDPNGELIITDWV 460 Query: 303 EKDPIA--GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 KDP ++ P + + QY + + Sbjct: 461 PKDPSGDPNGADGPPANPGDVVSPIPEPATSSAFVVNLANTTQYGAAFGVNDQQQNGYTT 520 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + +++ + Y + +K+ +A N L W+E S Sbjct: 521 GRLSGLDVSDQGVIFARYTNGQSKSLGQVALAAFNNTDGLSPVGD--TTWVETFESGQPV 578 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I S V+L EL LI +++Y + K I +D + QT++ Sbjct: 579 IGAPDTGTLGSIKASSVEDSNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 636 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 39/448 (8%), Positives = 93/448 (20%), Gaps = 20/448 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFD 64 FN + AS NI NA + + Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKSSKVQFGDLYASGFLSAGTNPIGDGVRV 61 Query: 65 KVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + I + ++ + E Y N Sbjct: 62 QDVKQSFGQGNISFTDNGLDMAISGDGFFILNNGGEIRYSRAGQFGIDKEGYVVNNQNMR 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + D+ + E + ++ +++ R + D A Sbjct: 122 VQGYTADDDGNLSGIRGDLQIETDNLAPRRTTNLQTDLNLDSRETVLERRIRDFDPIALA 181 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D I + + + T T + Sbjct: 182 DLQGSGFTFGYSDGTSDYTVPQIDATASASDAAIAINAAPGVTATARTAASLTGLTDSDV 241 Query: 243 YTVTSESNPIFIDGVVVSS---------------NQGSAVPKGKIKALLQIRDSVVPIFQ 287 T+ I IDG ++ + D P Sbjct: 242 SGATNFRLEIRIDGSAPIPLNLENVSSLEDVAEAINDTSDNAISASVVDDDEDPSTPDVL 301 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + L ++ + + N D + + S + + + Sbjct: 302 RIIHSGGQPLEVAYGDAPTGTPLTNNQQYDGEVFVTTDRNVEQVTTDSGSNAFEVAFNAT 361 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P + + + + +N D + + + ++ +P G + Sbjct: 362 PFTVTNEFNPIDQRTYNHATSTTIFDSLGN-SHELTQFYVKEPSPGNGVGQSQWSIYLQI 420 Query: 408 IGW-LEKNRSDSHDLHMKSQVVFNHISE 434 G + + I+ Sbjct: 421 DGELVGGTDQTPYTALFDQDGQLESING 448 >gi|255521910|ref|ZP_05389147.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-175] Length = 411 Score = 97.0 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + K D+ SPT +L+ ++ D Sbjct: 54 -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G ++ + + + Q+ + + + L L + + ++ A Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 +K+ + +S I + ++ + D + ++ ++ Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSALSVYDNAGGKHKLQVNMKAATPDA 213 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S I +DG ++ + L P + + V + Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++G + + + + T + + ++ Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L + ++ S Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|77920039|ref|YP_357854.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] gi|77546122|gb|ABA89684.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] Length = 413 Score = 97.0 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 118/342 (34%), Gaps = 20/342 (5%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49 MS L++ Q++ + ++ NA N R+ + P Sbjct: 1 MSDLISSLQSGQSVPSVNRTGREITDNDVANAKNG--SRQPAQISQPPSLAAHGDFTARA 58 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 N+ L + S G+ A E + + ++ L D Sbjct: 59 AVGSGIARAENNLITNQLVSRRSGYGEASAQAGALAKLEGIICAPASD--LCSTMAALFD 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++++ + V+ +++ F RE+ +++A+ D++I + +L + L + Sbjct: 117 GRQAFASPPEPGREREKVLATGKQLTDTFRQMDRELAEVQAEIDQDIASAVDDLNKQLMQ 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + V+ I + A + A D+R+ LLQ ++E +GI + + V G L Sbjct: 177 IGDVDTRIVTREAGGNPADTLRDERNRLLQTVAETVGIQYNEMDTGGVSVQLPSGAPLVM 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + S + + S++ + GKI L+ +RD + + Sbjct: 237 SGD-----VGCFSSECREGKVLLSLSHGATSTDLSTNDLGGKIGGLMTVRDETIEKTRTA 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 LD++A + D + G +G + Sbjct: 292 LDQLAEEIAARVDTIDSSQVVMDGNTGQDFFNGATSSNGSTT 333 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 34/104 (32%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 D D F+ N + TLLE R + S + + + Sbjct: 307 DSSQVVMDGNTGQDFFNGATSSNGSTTLLERYRQLAAGIRIEVSRNTTALESDEDSLIQL 366 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 G + +EE+ L + + Y + K + ML +LL Sbjct: 367 QNLQDTIAGASPEEEMMLLSQYQGGYQTAVKSLSLVQGMLDSLL 410 >gi|220913724|ref|YP_002489033.1| hypothetical protein Achl_2983 [Arthrobacter chlorophenolicus A6] gi|219860602|gb|ACL40944.1| protein of unknown function DUF1078 domain protein [Arthrobacter chlorophenolicus A6] Length = 390 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 39/378 (10%), Positives = 100/378 (26%), Gaps = 7/378 (1%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 ++ + N ++ +A + + + + A +I R Sbjct: 15 HQTMLDVTGNNIANVNTTGFKASATQFQDTLSQMTQAAAAGQDGAAGSNPAQIGLGVRVA 74 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 T T D D + + + +++ + + DG L Sbjct: 75 GISTNFGQGSAQSTGRGSDMMISGDGFFITGKGAQNFYTRAGAFEPDSEGRLVSPDGGIL 134 Query: 228 FETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + + N ++ +P + R V Sbjct: 135 QGWTAANGVLNTGGPLGNIVLSPNTTSPATATTRTSLEGNLPSDAAVGTVVERQVKVFNA 194 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----P 342 + + + D ++ G I V+ Sbjct: 195 DGAARTLNLTFSSTGAGWDVAGADANGATGTSAMTFQNGALTSGGTMAVGGITVDLAAVT 254 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Y + + S+ LA L+ + + + +A L + Sbjct: 255 GYAGMSTLTVGTRNGSEAGKLESYTLAADGSLVGSFSNGSREVLARVALARFANPGGLEK 314 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + ++ S + + Q ++ V+L +E + LI ++ + + Sbjct: 315 AGGS--SYVATGNSGAAQVGTPGQAGMGTLATGSLEMSNVDLSQEFTNLIVAQRGFQANA 372 Query: 463 KLIMFTDKMLQTLLEGVK 480 ++I +D++LQ L + Sbjct: 373 RIITTSDEVLQELSNLKR 390 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 23/342 (6%), Positives = 58/342 (16%), Gaps = 21/342 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + NI N + + T + +T ++ Sbjct: 1 MLRSLYSGISGLRAHQTMLDVTGNNIANVNTTGFKASATQFQDTLSQMTQAAAAGQDGAA 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + + Sbjct: 61 GSNPAQIGLGVRVAGISTNFGQGSAQSTGRGSDMMISGDGFFITGKGAQNFYTRAGAFEP 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E + IL + + I + + Sbjct: 121 DSEGRLVSPDGGILQGW------TAANGVLNTGGPLGNIVLSPNTTSPATATTRTSLEGN 174 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + R + L S G + N ++ T Sbjct: 175 LPSDAAVGTVVERQVKVFNADGAARTLNLTFSSTGAGWDVAGADANGATGTSA--MTFQN 232 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + TV + + ++ + GK+++ D + + Sbjct: 233 GALTSGGTMAVGGITVDLAAVTGYAGMSTLTVGTRNGSEAGKLESYTLAADGSLVGSFSN 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 + +P Sbjct: 293 GSREVLARVALARFANPGGLEKAGGSSYVATGNSGAAQVGTP 334 >gi|242280400|ref|YP_002992529.1| hypothetical protein Desal_2938 [Desulfovibrio salexigens DSM 2638] gi|242123294|gb|ACS80990.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 528 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 50/533 (9%), Positives = 113/533 (21%), Gaps = 63/533 (11%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46 + A + I N+ N + Y DT Sbjct: 3 FSSMYTAATGVKSHGVLLQQIGANLANVNTTAYKSGDTFLETLASQSSGKANSGIVSGGI 62 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + N + +S+ Q F + + N S Sbjct: 63 STPGQIGLGTRVATTRINFKEGSFETTNSSTDIAIGGQGFFRVAD-----PVSNASRYTR 117 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++IL ID+ + +++ +I + S+ Sbjct: 118 AGSFHFDKNGQLVDSHKNILQGYKIDDDGNIGSTSQNIVLPMKEETDTYGNKIMVVKSDP 177 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + S N S + F + N++ + + Sbjct: 178 KGTDSVTMRTNLDSGAVDNSSSEDSPFFSLLQEWDGTKDTPLTADKYEYNSSIQIYDDNG 237 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + +S E G S+ G++ + L Sbjct: 238 NKHDLVVYFDKVINDGDSSDKRHWEYIVTVPPGEDASALTGTSGAGLVMAGTLTFSGDGA 297 Query: 284 ------------------------------------PIFQNQLDEMARVLIGSFSEKDPI 307 + I Sbjct: 298 LLNQSAFTLAAGSADGKDLANWEQATLNSNGQPTFSVTLSGASGTASAQTISLDMGITSG 357 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + G Y + S + + + Sbjct: 358 TDSWNTTGVTAADIGSNASSLPGMVDGKLNALATTDYYGSSSTISQSQDGFGEGYLQNVS 417 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + + + L N S + + Sbjct: 418 FSPDGIMSALFSNGMSAELYQVNLYNFKNEFGLRREGSNYFS--ATIDSGEAIQGVARKD 475 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + T V+L +E +++I ++ + ++K I TD M+ T L K Sbjct: 476 GLGSVVSNSLETSNVDLADEFAYMILTQRGFQANSKGITTTDSMINTALGIKK 528 >gi|296186750|ref|ZP_06855152.1| hypothetical protein CLCAR_2214 [Clostridium carboxidivorans P7] gi|296048787|gb|EFG88219.1| hypothetical protein CLCAR_2214 [Clostridium carboxidivorans P7] Length = 160 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 46/99 (46%) Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 N + + + +TL Y ++++ L ++ + ++S + G Sbjct: 61 VNSKLGVNAIINKTSGMTLDSYFKDTVDRLGIQEQEAKKTVTNQASLLAGFTQSRDSVSG 120 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE++ L++ + Y + KLI D++L ++ G+K Sbjct: 121 VSLDEEMANLVQFQHCYQANAKLISTVDQLLDVVINGLK 159 >gi|320179224|gb|EFW54182.1| Flagellar hook protein FlgE [Shigella boydii ATCC 9905] Length = 389 Score = 96.6 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 46/465 (9%), Positives = 102/465 (21%), Gaps = 80/465 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + +N T+F++ + Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D + A+ L A ++ S Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ G + + Q + + + K Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVVTTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 F ++ V+L +EL +I +++Y + + I Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKT 389 >gi|224437581|ref|ZP_03658537.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 718 Score = 96.6 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 53/453 (11%), Positives = 121/453 (26%), Gaps = 10/453 (2%) Query: 31 ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEM 89 + + V + + + L + Q E +M Sbjct: 273 VSTIGINGEKVSFSNNSAITGVSSIVAAQNAI--NSLRDKTGVSAYVDAGQLRIENRNQM 330 Query: 90 MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 + N T + + + ++++ T ++A+ F T+ I+ Sbjct: 331 DGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQ 390 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 DA+ E + S +N F+ + DA D++ L ++ + Sbjct: 391 YDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGDDA---DDEQRNLSLYVTSHFSDNV 447 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + +L E + + TS + + Sbjct: 448 TNNVLFKETFKALNTASLIEGGAAVNTGKINKATHATSVDIVDSLGSKHNIRFEFWKTGD 507 Query: 270 --GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +A++ V + + S+ N + Sbjct: 508 AVWSFRAVVPEPAQFVGGSATKPNVFEGGRATFNSDGSLSGMNPPVLQFDPKNGSKGPQR 567 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 +L G +E+ + + L+ + + + Sbjct: 568 LELKFGANESFGGLTSVDKISETYAINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALA 627 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A N L N S + + +S S V+L Sbjct: 628 QVALANFANNTGLQAEGGNVFSQTGN--SGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 685 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI V++ + ++K + +D++L TLL + Sbjct: 686 LTQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/470 (7%), Positives = 93/470 (19%), Gaps = 40/470 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + NI N + + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60 Query: 49 NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K F + + D Sbjct: 61 GGQNDFSIGLGVGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFII-----SPDRGTTHNY 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + ++ V E + + + I+++ Sbjct: 116 TRNGEFLFDANGNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPG 175 Query: 162 NLRR-----FLSELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + ++ +N D ++ A A D + ++ + + Sbjct: 176 MVMPARATKTITLRANLNAGRHIDQMQEIAALDSTARTAADGIAPVYDSRGVLMQVGEDM 235 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + + T E + I I+G VS + SA+ Sbjct: 236 GVLFNDDGDAFALNENQGIWMSYKTAVIKHDTVATDEVSTIGINGEKVSFSNNSAITGVS 295 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLD 327 Q + + + + + G N Sbjct: 296 SIVAAQNAINSLRDKTGVSAYVDAGQLRIENRNQMDGGEKVKNIRITADGTGVFQNFVKG 355 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + S R + ++ + S Sbjct: 356 EEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQYDANMIKNPEKNYQESTASVAVTLN 415 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + I + RN ++ + SD+ ++ + F ++ + Sbjct: 416 RWGMFEITNGDDADDEQRNLSLYVTSHFSDNVTNNVLFKETFKALNTASL 465 >gi|269792937|ref|YP_003317841.1| hypothetical protein Taci_1328 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100572|gb|ACZ19559.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 636 Score = 96.3 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 111/397 (27%), Gaps = 14/397 (3%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 L ++ +A S KL + + S + L + + ++ + N E Sbjct: 253 NLTQITTAGAFTGASYDPATGKLTVTDGTNSSTVDLAALMDFQVLSVKDALNNTYYYLAE 312 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + DKE+ L + S + + D ++L S Sbjct: 313 FNDVATTGDKELVLWGPD----ASAGGAMTRYSVTVPTRRDGTFDLSAATNLLAAAQSPT 368 Query: 205 IG-ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 ++ + +V TT+ R + S N ++ + Sbjct: 369 GNAVTVQATTDGLGLVVKDGATTVATLNQRLSSVHTSKMDIYDSLGNAHTLEVSWEKIDN 428 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + + + I + N E + +F A + + Sbjct: 429 NQWRWRAFLPSEPGITMTDNTGVINFTSEGKIEGVDTFDVTINFAALGAEDSTVRLDFSG 488 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + D + I QY S + + ++ + Y + Sbjct: 489 RSFD-------KDAIEGVTQYGSAFTTKAYYQDGYPMGVLQDYAVSSDGTVQGVYSNGQR 541 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +A L + + S + + I S V+ Sbjct: 542 QPLYKLALALFANPQGLFKESGTVFSQ--SANSGIAQIVKPMEGGAGRIMGSNLEMSNVD 599 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L +E LI ++ + + ++I +D++L+ L+ + Sbjct: 600 LSQEFVNLIVAQRGFQANARVITTSDQVLEELINLKR 636 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/399 (5%), Positives = 76/399 (19%), Gaps = 22/399 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------P 47 +L + + NI N + + R + + Sbjct: 1 MLRSLYSGVSGVKGHQTYLDVVGNNIANVNTTGFKRSNVLFQDLLYQNVRGAMAPDAGQG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 Q + + F + ++ Sbjct: 61 RGGINPMQVGLGSMVGAVETIHTQGTMQYTGNRNDFGISGDGYFVVKTGADTFYTRAGSA 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL---- 163 S +++ + I +++E + L Sbjct: 121 TMDSGGNLVM-SGMGYIYQGYKMSKDPTDPTKYVEGPLGDINIPVGQKLEANKTTLGGYR 179 Query: 164 -RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + I + + + + T+ N + + Sbjct: 180 CNLDSRVKAHLPMGITGNDSEFKIVLGTNTYTLNQVSEGGAVASFMTLSDGTNSVTLGFP 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + N ++ + + ++ G + ++ ++ + AL+ + Sbjct: 240 AAGPIVDPTSLLPNLTQITTAGAFTGASYDPATGKLTVTDGTNSSTVD-LAALMDFQVLS 298 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V N + D A + + + + Sbjct: 299 VKDALNNTYYYLAEFNDVATTGDKELVLWGPDASAGGAMTRYSVTVPTRRDGTFDLSAAT 358 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + + + + Sbjct: 359 NLLAAAQSPTGNAVTVQATTDGLGLVVKDGATTVATLNQ 397 >gi|262404534|ref|ZP_06081089.1| flagellar hook-associated protein FlgK [Vibrio sp. RC586] gi|262349566|gb|EEY98704.1| flagellar hook-associated protein FlgK [Vibrio sp. RC586] Length = 579 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/414 (10%), Positives = 109/414 (26%), Gaps = 14/414 (3%) Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + K + H N T L+ +++ + Sbjct: 165 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKIIDGYPDTQQHRLAMVEGKAIKAISA 224 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198 +++ I DK I + + R + + ++ + DV + Sbjct: 225 RDIGGKMEAILDMRDKHIPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGGPLFTDVNM 284 Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 I+ ++ + + + + + Sbjct: 285 DVIARSRVVTNSNSKADMAVFIDDVSQLKGGEYSMQYNGSEYVVTQPSGQQTVLPVVKGN 344 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V + I + + P A +++ Q E + ++ Sbjct: 345 VYIDGLRIEVRNPPQVGERVLVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 404 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + ++ +G + L +++ L N Sbjct: 405 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 464 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 K A + I + T+++ N + + L Sbjct: 465 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 524 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S++ ++ GVNL EE + ++K +Q+Y S+++I ++ T+L Sbjct: 525 SRLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 578 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 113/297 (38%), Gaps = 7/297 (2%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V R K L+ S+ +R + + + + Sbjct: 8 ETYGMGVHVENVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPEN 66 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +++ DS++S + + ++ K V++ A+ + QN N V++ + A+K ++L + + Sbjct: 67 LNEWFDSVKSLADSPNDLGARKVVLEKAKLISQNLNDFHETVRQQKDIANKGLDLGVERI 126 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTS 222 + E+ + + +D +D+ + L+ ++S+ ++ R N ++ Sbjct: 127 NQLALEIRDLQRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIG 183 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 +G TL + ++ Y T + ++G + + + GK++A+L +RD Sbjct: 184 NGHTLVSGTEASQL-KIIDGYPDTQQHRLAMVEGKAIKAISARDI-GGKMEAILDMRDKH 241 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +P +++ +A + + G + + + ++ + Sbjct: 242 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGGPLFTDVNMDVIARSRVVTNSNS 298 >gi|323178488|gb|EFZ64066.1| flagella basal body rod family protein [Escherichia coli 1180] Length = 218 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 78/219 (35%), Gaps = 12/219 (5%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54 + N + + A + +N NA Y R+ + + V V + Sbjct: 2 DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + +S G Q + + E + +DD N+S + +L Sbjct: 62 IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + + L + VI A + + + + + + + +S + S + N Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I A+ +A D RD +++++S ++ + + + Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDD 218 >gi|313144034|ref|ZP_07806227.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313129065|gb|EFR46682.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 707 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 53/453 (11%), Positives = 121/453 (26%), Gaps = 10/453 (2%) Query: 31 ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEM 89 + + V + + + L + Q E +M Sbjct: 262 VSTIGINGEKVSFSNNSAITGVSSIVAAQNAI--NSLRDKTGVSAYVDAGQLRIENRNQM 319 Query: 90 MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 + N T + + + ++++ T ++A+ F T+ I+ Sbjct: 320 DGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQ 379 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 DA+ E + S +N F+ + DA D++ L ++ + Sbjct: 380 YDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGDDA---DDEQRNLSLYVTSHFSDNV 436 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + +L E + + TS + + Sbjct: 437 TNNVLFKETFKALNTASLIEGGAAVNTGKINKATHATSVDIVDSLGSKHNIRFEFWKTGD 496 Query: 270 --GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +A++ V + + S+ N + Sbjct: 497 AVWSFRAVVPEPAQFVGGSATKPNVFEGGRATFNSDGSLSGMNPPVLQFDPKNGSKGPQR 556 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 +L G +E+ + + L+ + + + Sbjct: 557 LELKFGANESFGGLTSVDKISETYAINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALA 616 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A N L N S + + +S S V+L Sbjct: 617 QVALANFANNTGLQAEGGNVFSQTGN--SGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 674 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI V++ + ++K + +D++L TLL + Sbjct: 675 LTQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 707 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/459 (7%), Positives = 90/459 (19%), Gaps = 40/459 (8%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVT-------V 52 NI N + + Sbjct: 1 MQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSIGLG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V + K F + + D + Sbjct: 61 VGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFII-----SPDRGTTHNYTRNGEFLFDAN 115 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-----FL 167 ++ V E + + + I+++ + + Sbjct: 116 GNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPGMVMPARATKTI 175 Query: 168 SELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + +N D ++ A A D + ++ + + + Sbjct: 176 TLRANLNAGRHIDQMQEIAALDSTARTAADGIAPVYDSRGVLMQVGEDMGVLFNDDGDAF 235 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + T E + I I+G VS + SA+ Q + Sbjct: 236 ALNENQGIWMSYKTAVIKHDTVATDEVSTIGINGEKVSFSNNSAITGVSSIVAAQNAINS 295 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLDNKLCQGISETI 338 + + + + G N + Sbjct: 296 LRDKTGVSAYVDAGQLRIENRNQMDGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRY 355 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + S R + ++ + S + I Sbjct: 356 TKSEDADSTTGQFRTTEDLRALIQYDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGD 415 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + RN ++ + SD+ ++ + F ++ + Sbjct: 416 DADDEQRNLSLYVTSHFSDNVTNNVLFKETFKALNTASL 454 >gi|226320911|ref|ZP_03796462.1| Flagellar hook-associated protein 1 [Borrelia burgdorferi 29805] gi|226233683|gb|EEH32413.1| Flagellar hook-associated protein 1 [Borrelia burgdorferi 29805] Length = 283 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 85/277 (30%), Gaps = 7/277 (2%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 I++ + + T +I N+ + + + Sbjct: 12 SYFQINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTA 71 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + ++ K +IKA+ + D + +++ L + + Sbjct: 72 RINSEGKLEIKAVKEQEDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNID 128 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + + + S + N N D + Sbjct: 129 TTDKLAPKSTYSISPLKNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AAL 184 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + I N+TL +Y N+ + S + +++ + GV Sbjct: 185 RISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGV 244 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 N EEL+ +I+ +Q++ ++K I + +++ T++ + Sbjct: 245 NKDEELANMIEFQQAFIAASKFITVSVELIDTVINKM 281 >gi|227815506|ref|YP_002815515.1| putative flagellar hook-associated protein [Bacillus anthracis str. CDC 684] gi|254755229|ref|ZP_05207263.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Vollum] gi|227007620|gb|ACP17363.1| putative flagellar hook-associated protein [Bacillus anthracis str. CDC 684] Length = 214 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 14/189 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ + Sbjct: 1 MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 ++ +KN + T+I + N A+ + A ++IE ++ R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178 Query: 169 ELTVVNDAI 177 L N + Sbjct: 179 SLAEANKKM 187 >gi|172061972|ref|YP_001809624.1| flagellar hook protein FlgE [Burkholderia ambifaria MC40-6] gi|171994489|gb|ACB65408.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MC40-6] Length = 413 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + + + L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + + L+ + T + + Sbjct: 126 TAGSGGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D S I + + + + +Y + Sbjct: 170 TKTPFSATDSTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G + G IK+ + Q Sbjct: 220 --------GGATTDLGTVTFDTSGAIKSTTTGTPAAPTTSLGQFQ--------------- 256 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + Q ++ + QY Sbjct: 257 -------------FTVPNTDGSATPQSLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E + S + Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESSASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|170703096|ref|ZP_02893916.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] gi|170131993|gb|EDT00501.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] Length = 413 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + + N + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGLASVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + + + L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + + L+ + T + + Sbjct: 126 TAGSGGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D S I + + + + +Y + Sbjct: 170 TKTPFSATDSTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G + G IK+ + Q Sbjct: 220 --------GGATTDLGTITFDTSGAIKSTTTGTPAAPTTSLGQFQ--------------- 256 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + Q ++ + QY Sbjct: 257 -------------FTVPNTDGSATPQSLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E + S + Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESSASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|307131609|ref|YP_003883625.1| flagellar hook protein flgE [Dickeya dadantii 3937] gi|306529138|gb|ADM99068.1| Flagellar hook protein flgE [Dickeya dadantii 3937] Length = 399 Score = 96.3 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/473 (7%), Positives = 103/473 (21%), Gaps = 76/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N AS I NI N+ + + V Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRV------- 54 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ + S + S + ++ + + + + Sbjct: 55 ------------------ASVLQDFSNGSITSTSRSLDVAINGNGFYRLLNSNGSVVYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + R + + + + Sbjct: 97 NGQF--------------TLDSSRNIVNAQGLQLTGYPATGTPPAIQQGADPVGLSIPET 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ ++ +T + T ++++ NF + Sbjct: 143 TMSAKATSTASIIASLNSSDSTNTWDPTDPTNTSNYKGSITTYDSLGNAHNFALYFVKSA 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ + D + + Sbjct: 203 SNSWDVYAQDTSITGAGFQGPTT-----------------------------------LS 227 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + Q + S + Sbjct: 228 FNTSGALTTTTPATISMATLNGSAASTFNLSFTGTVQQNSGSNSTKTPTQDGYEPGELTG 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +++ ++ Y ++ + +A L N W S + Sbjct: 288 YSISEDGSVVGSYSNNKTQLLGQIALANFANPEGLSPQGDNV--WAATGNSGQAVVGSAG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 346 TGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 398 >gi|254436908|ref|ZP_05050402.1| hypothetical protein OA307_1778 [Octadecabacter antarcticus 307] gi|198252354|gb|EDY76668.1| hypothetical protein OA307_1778 [Octadecabacter antarcticus 307] Length = 228 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 5/199 (2%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENKNMFDKVLH 68 N AS+ + N+ N+ Y RR + + V + + Sbjct: 1 MNAASRMAEIVSSNVSNSLTDGYGRRSLNLSSAVVGGRGAGVEIGSVNRHVDRGILGDRR 60 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 +++G L S + + S + I + +L + + + I ++ Sbjct: 61 LAGASLGGFGSLVSTLNRIQDTVGQAGDSGSISARIVAVESALIDAASDPASTIRLSSLG 120 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 +V + N S+ ++Q RA AD I ++S L L+++ N I + + D Sbjct: 121 GRLSDVAASLNASSGDIQTQRAQADTSIAGQVSQLNTALAQVEQFNVDISYSHHNGVDPS 180 Query: 189 DFLDQRDVLLQKISEIIGI 207 DQR ++ I+EI+ + Sbjct: 181 GLHDQRQRVIDVIAEIVPV 199 >gi|146341764|ref|YP_001206812.1| putative flagellar hook-associated protein 1 FlgK [Bradyrhizobium sp. ORS278] gi|146194570|emb|CAL78595.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein) [Bradyrhizobium sp. ORS278] Length = 581 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 21/449 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A + Q + NI NAD K Y ++ V++ Sbjct: 1 MSLDIARLVAFTGISTTELQISVASSNISNADTKGYTQKTANQVADVTGGIGTGVSITGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109 S + K L +S +G S+ + + S + ++ L Sbjct: 61 SSNVDKLLLKSLIGANSDLGAADTTNSYLTQLQQLFGSASTSGTSTTGTSLANSLASLES 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + + S L + ++ +++ VQ +R +ADK+I + ++ L + Sbjct: 121 ALSSLASSPSSVSLQSAAVSALDDFASQLRSTSSSVQTLRGNADKDIASSVQSVNDDLKQ 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 ++ +N I+ AS D D+R+ LQ +S + +S +N D+ VYTS G L + Sbjct: 181 ISDLNVEIRKMAASGQSTADLEDERNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + +++ + + +S + I +DGV VSS S GKI +L+ +RD +P Q Q Sbjct: 241 SSAHTLSYTTSANISASSSFSGIMVDGVDVSSQITS----GKIGSLITLRDDTLPAVQTQ 296 Query: 290 LDEMARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 LD++A L I + P + A G+ + ++ + Sbjct: 297 LDQLASQLRSALNGITEGASAVPPPTTLTGTASVSSATGLSASGTVRIAAVDQSGNLTAS 356 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 Y + S G + + D + V + ++ ++ Sbjct: 357 YDFDLSGYSTVGDLVADINAKNIGVTASIDSSGDLALTATATGNGVAVNDMTSSFGGPDF 416 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + S + D + + ++ Sbjct: 417 SGYFGINDLVTGSSAADFAVNNSILSGSA 445 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 1/226 (0%) Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 + G + A + ++ V + ++A + + S Sbjct: 354 TASYDFDLSGYSTVGDLVADINAKNIGVTASIDSSGDLALTATATGNGVAVNDMTSSFGG 413 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 F + + + S S + + AG +I Sbjct: 414 PDFSGYFGINDLVTGSSAADFAVNNSILSGSAGLPTGTLDSSATLTSGSQVLTAGSATVI 473 Query: 376 NHYCDSFNKNFIFDPVAGIN-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 N D + F G++ T + +YA + + S + + + + Sbjct: 474 NALYDKLTGSTSFKAAGGLSATTGSFADYAAAIVANVASKASQASSNYTAKSTAQSSYAS 533 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S S+ GVN+ EE + L ++ Y +++LI + M +LL V+ Sbjct: 534 SLSSQSGVNIDEETARLSSLQNKYAAASQLISVVNSMFSSLLTAVQ 579 >gi|107023953|ref|YP_622280.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116691040|ref|YP_836663.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105894142|gb|ABF77307.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116649129|gb|ABK09770.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 413 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + + AS I NI NA+ + N + + + Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTLNSVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D + + + + L+ + T + + Sbjct: 126 MADKNGVL----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D S I + + + + +Y + Sbjct: 170 AKTPFNATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G + G IK+ + Q Sbjct: 220 --------GGATNDLGTITFDTSGAIKSTTTGTPATPTASLGQFQ--------------- 256 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + Q ++ + QY Sbjct: 257 -------------FTVPNTDGSATPQNLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|170734374|ref|YP_001766321.1| flagellar hook protein FlgE [Burkholderia cenocepacia MC0-3] gi|254246965|ref|ZP_04940286.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124871741|gb|EAY63457.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|169817616|gb|ACA92199.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 413 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + + AS I NI NA+ + N + + + Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTLNSVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 I + + + Y N L Sbjct: 66 QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D + + + + L+ + T + + Sbjct: 126 MADKNGVL----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 A + D S I + + + + +Y + Sbjct: 170 AKTPFNAADTTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 G + G IK+ + Q Sbjct: 220 --------GGATNDLGTITFDTSGAIKSTTTGTPATPTASLGQFQ--------------- 256 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + Q ++ + QY Sbjct: 257 -------------FTVPNTDGSATPQNLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ L +Y + +A N L+ N E S + Sbjct: 304 SIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|317129200|ref|YP_004095482.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315474148|gb|ADU30751.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 397 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 2/225 (0%) Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 + VP I +L + + + +E G + V Sbjct: 175 NSETQVGETVNVPYPVIDSLGNMHYLELTFQKQAGNEWTVQAGGQALGNVNFGNDGSFVA 234 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + +N I QY N + S + +++ +++ Sbjct: 235 ADDMTVNFNPGNNANPLNIELDFSRMSQYARNSTADIHYVSGNVDGTLESYSISQAGEIM 294 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + + + +A N L + N ++ N S + + + ++ + Sbjct: 295 GVFSNGEVRLLGQIALATFNNPGGLSKSGNNL--YMVSNNSGNPQVGLAGDGGRGMLTGA 352 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 353 SLEMSNVDLSEEFTEMIVAQRGFQANTRMITTSDEILQELVNLKR 397 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 19/292 (6%), Positives = 56/292 (19%), Gaps = 20/292 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + + NI N + + + + Sbjct: 1 MIRAMYAGIGGMKSFQTKLDVVGNNIANVNTSGFKKGRVTFQDLVSQQMSGAATPTDNRG 60 Query: 63 FDKVLHA-------------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ + + S Sbjct: 61 GINPMQVGLGTSMGSIDTIHTQGSLQTTGRDLDIGITGDGFFIVNDGGQSYYSRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 N + + + + E ++ + NL Sbjct: 121 DENGDLVNANGLRVQGYSVVDGELDTNTLGPLQIASGQLIPPQATDEAQFKGNLNSETQV 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 VN + + + L + + + V + + Sbjct: 181 GETVNVPYPVIDSLGNMHYLELTFQKQAGNEW------TVQAGGQALGNVNFGNDGSFVA 234 Query: 230 TVPRDINFEK-MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 +NF N+ + E + + +S G + L+ Sbjct: 235 ADDMTVNFNPGNNANPLNIELDFSRMSQYARNSTADIHYVSGNVDGTLESYS 286 >gi|32267203|ref|NP_861235.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32263256|gb|AAP78301.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 718 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/452 (11%), Positives = 121/452 (26%), Gaps = 8/452 (1%) Query: 31 ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90 + + V + + + + E +M Sbjct: 273 VSTIGINGEKVSFSNNSAITGVSSIVAAQNA-INSLRDKTGVNAYVDAGQLRIENRNQMD 331 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + N T + + + ++++ T ++A+ F T+ I+ Sbjct: 332 GGEKVKNIRITSGGTGVLQNFVQGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQY 391 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 DA+ E + + +N F+ A + D D++ L ++ + Sbjct: 392 DANMIKNPEKTYYESTATVGVTINRWGMFEIA---NHDDADDEQRNLSLYVTSHFSDNVT 448 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK- 269 + + +L E + + + TS + + Sbjct: 449 NNVLFKETMKALNTASLIEGGAAVNTGKIVKATHATSVDIVDSLGSKHNVRFEFWKTGDA 508 Query: 270 -GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +A++ + + + S+ N + Sbjct: 509 VWSFRAIVPEPAQFIGGSITKPNVFEGGRASFNSDGSLSGMNPPVLQFDPKNGSKGPQRL 568 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 +L G +ET + + L+ + + + Sbjct: 569 ELKFGANETFGGLTSVDKISETYSINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALAQ 628 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N L N S + + +S S V+L L Sbjct: 629 VALANFANNAGLQAEGGNVYSQTGN--SGEPMVGAANTGRRGGVSGSKLEMSNVDLSRSL 686 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI V++ + ++K + +D++L TLL + Sbjct: 687 TQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/328 (7%), Positives = 64/328 (19%), Gaps = 41/328 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + NI N + + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60 Query: 49 NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K F + + D Sbjct: 61 GGQNDFSVGLGVGIDATTKVFSQGNTQNTDVKTDVAIEGDGFFII-----SPDRGTTHNY 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + ++ V E + + + I+++ Sbjct: 116 TRNGEFLFDANGNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPG 175 Query: 162 NLRR-----FLSELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-- 209 + ++ +N D ++ A A D + + + Sbjct: 176 MVMPARATKTITLRANLNAGRHIDQMQDVAALDSTAQTAADGVVAIYDSRGVLTQVGEDL 235 Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + + + + G L + + + T N + S+ G + Sbjct: 236 GVLFNDDGDAFALNENQGIWLSYKTAAIRHETVVTNEVSTIGINGEKVSFSNNSAITGVS 295 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMA 294 A+ +RD ++ Sbjct: 296 SIVAAQNAINSLRDKTGVNAYVDAGQLR 323 >gi|153839997|ref|ZP_01992664.1| flagellar hook-associated protein [Vibrio parahaemolyticus AQ3810] gi|149746457|gb|EDM57466.1| flagellar hook-associated protein [Vibrio parahaemolyticus AQ3810] Length = 375 Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/364 (11%), Positives = 114/364 (31%), Gaps = 18/364 (4%) Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174 ++D + F+ ++Q D + +I ++ +++ L + V Sbjct: 18 QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 77 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + +A K + D + + + ++ V + E + Sbjct: 78 VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSAFVLDGMRVQIGEGLAAG 137 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + D +++ A + + + + Sbjct: 138 ERVLLRPTRSGAAIIKMETNDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 196 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 I N N+ + + D + +S++ + + L +G Sbjct: 197 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVSKSHPLYKNGDATIFELTEG 256 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ KF N+ G + + TL++ N + Sbjct: 257 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 310 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + ++ L +++ E ++ GVNL EE + ++K +Q+Y S++++ + T Sbjct: 311 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 370 Query: 475 LLEG 478 +L+ Sbjct: 371 ILQL 374 >gi|327398495|ref|YP_004339364.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181124|gb|AEA33305.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 719 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/442 (8%), Positives = 112/442 (25%), Gaps = 17/442 (3%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 R TI+P+ + + + ++ + + L L+ Sbjct: 295 RVASFTITPDG-EIQMKNLASSDITVANIATTNDLNSY--LKHGLINLEGGEGRSATIEA 351 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 T + + + N ++ +RA+ + +I Sbjct: 352 GKTRTTLPFLSAKGDVLAMSFDGGANYDAYRYVQSDTGTANNDFHTIEDLRAEINNDI-- 409 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ + + + + + D + + Sbjct: 410 -VNGGNGEAWATSSTSSDWVTIDPTSGEIVIKNNSTDDHVIGAVYSNNLKFATIMGTLSG 468 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + + + ++ ++ Y + + S + + +A + Sbjct: 469 LVGNGSEVTSQPFEAAVHVTSIDVYDSLGNKHTVTFTFRKKSFDPITNYTTWSWQASVPE 528 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 V + L+ S I D+D+ Sbjct: 529 PGEVSNDNGEIQFDQTGKLVYLSSPLAITVDWRNGTASQVINLDFGDIDSFDGLTQFSLP 588 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + ++ + + + +A N Sbjct: 589 SQTTAQTQD---------GYPGGSLQRIMINQDGVVVGIFSNGKSYPLAQIAMAKFANNE 639 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L++ + E S + + + S+ V+L EE + +I E+++ Sbjct: 640 GLMKEGGSMYS--ETANSGAPLIGTAGTGGRGTFAPSHLEMSNVDLAEEFTNMIIYERAF 697 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 +++ I +D+M+Q LL + Sbjct: 698 QANSRSITTSDQMIQELLNLKR 719 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 49/422 (11%), Positives = 101/422 (23%), Gaps = 31/422 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + + Q + N+ N + + + Sbjct: 1 MLRSLWSGVSGLKSEQQGMDVVGNNVANVNTIGFKKGRINFVDVLSQTMSAATGPEGNIG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T + L A S F + + D Sbjct: 61 GKNAAQIGLGTTVAVVDNIFSQGSLQATSKITDLAIQGDGFFVVSD-----DGGKTYRYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + N I+ + + + + V I IS Sbjct: 116 RAGDFSFDADGNLVNPEGFIVQGWLANEETHKINTAASIENIVVPQDKTVPAGITKNISI 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-----ISTIVRNNNDM 217 T+ A T +++ D VL E I + + + Sbjct: 176 KANLNGGDTIEEMAPAHGTVDENNNTVEPDDMSVLFDVNGEAINLGKTIATFANNSTSFS 235 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALL 276 +Y +G + + I+ + T + + D + S + Sbjct: 236 SLYDINGNQIQLSSGATISLDITYGGTTATATVSYPSDFNTLGSLASALGNAVSAAIGTR 295 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ P + Q+ +A I + NS GL +G + + G + Sbjct: 296 VASFTITPDGEIQMKNLASSDITVANIATTNDLNSYLKHGLINLEGGEGRSATIEAGKTR 355 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 T + + + G + V++ G + H + D V G N Sbjct: 356 TTLPFLSAKGDVLAMSFDGGANYDAYRYVQSDTGTANNDFHTIEDLRAEINNDIVNGGNG 415 Query: 397 NV 398 Sbjct: 416 EA 417 >gi|144901061|emb|CAM77925.1| probable: Flagellar hook protein FlgE, gene: FLGE OR GSU0419 [Magnetospirillum gryphiswaldense MSR-1] Length = 605 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/522 (7%), Positives = 103/522 (19%), Gaps = 54/522 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 + N A S SI +NI N + Y R++T+ + Sbjct: 76 IWGAMNNASTAMMATSWDMGSISQNISNVNTTGYKRKETLFKTVMSESKAGPSTHSGKLN 135 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 D+ I + + + + Sbjct: 136 IFGVKTADRYHIEQQGTITGSNWNTDLAINGRGFLLVAPPSTTTSGTTVSSNAPTSASVD 195 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + + + + I T+ Sbjct: 196 DPASVLYTRDGSFHFVAGPNQEKYFTTAGGNYVLGWMADDTGTIDQTGALTPVYTLPETT 255 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 ++ + ++ + RD L + + + + T + Sbjct: 256 MEGRETTEASVFANI-PRDATLSASNFNSTSTFTDPLGASQTLTLNWSRVDATTWTVTPS 314 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ------- 289 ++ +++ A I + Sbjct: 315 VPAAVGAVSSAAMTVTMDSNGNITAPATFAAEPVTINWDDGAYGAATADSATTVNLSSSK 374 Query: 290 ----LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++ + S + E + N I V Sbjct: 375 PSIPMQKIYLEVFDSNFNSHTVTLGFERSGINTWYMHVLPGSNATTGANPTPIDVTFNED 434 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 A ++ I + + TL+ Sbjct: 435 GKMVTGSPASLALSWTSGTEVGTATVALDMDGMTQYDGDLHIDNIATDGYGSGTLISSGF 494 Query: 406 NSIGWL-EKNRSDSHDLH--------------------------MKSQVVFNHISE---- 434 N G + + + + + + Sbjct: 495 NERGEMYGQFTNGKTRALFKLPIAQFVAENNLEPISGNLFRRSREAGDITVSSVENAVGA 554 Query: 435 -----SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S V++ +E + +I +++Y + + D+M Sbjct: 555 PRFSPSSLEASNVDIGQEFTKMIVTQKAYTTNATVFKTADEM 596 >gi|237751739|ref|ZP_04582219.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] gi|229373105|gb|EEO23496.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] Length = 718 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/442 (11%), Positives = 120/442 (27%), Gaps = 4/442 (0%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + ++ + + + + V E EM ++ N Sbjct: 281 QKVSF-TNDSGLSGTSTLAAAVSAINAVRDKTGIEAYVDNGQLRLENRNEMDGDENTKNI 339 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 T + + K+++ T ++ + F T+ ++ DA+ Sbjct: 340 IVTKSGTGAFANFVEGDKDITAFRYRYTKSNDPDSTTGQFKTTEDLRALMQYDANMIKSP 399 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 S +N F+ ++K + D ++ S S I+ + Sbjct: 400 GKEYKDSTASVSVTLNRFGMFEISNKDNDDGVTDNLQIMASAYSSGQVSSNILLRDAMRA 459 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T+ + F T + + + S + +A++ Sbjct: 460 LNTAS-LIEGGSSVASGKFTHARHATSVDLFDTLGTKHTIRFEFIKSGGKEWTFRAIVPE 518 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + + + + ++ N + +L G ++T Sbjct: 519 PAQFIGGSADNPNMFEGGRVSFNNDGSLAGMNPPMLQFDPKNGAESPQRIELNFGKNQTF 578 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + L+ + + +A + Sbjct: 579 DGLTSVDKRSETYNIAQNGYNAGDLMDVRFDANGALLGAFSNGKTLALAQVGLANFANSA 638 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L N S + + +S S V+L L+ LI V++ + Sbjct: 639 GLQAEGNNIFSETGN--SGEPIIGAANTGRRGGVSGSKLEMSNVDLSRALTQLIVVQRGF 696 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 ++K I +D++L TLL + Sbjct: 697 QANSKAITTSDQILNTLLSLKQ 718 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 27/392 (6%), Positives = 78/392 (19%), Gaps = 36/392 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + NI N + + V Sbjct: 1 MLRSLWSGVSGLQAHQVALDVESNNIANVNTVGFKYSRASFVDMLSQVKQIATSPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K F + + D Sbjct: 61 GGQNDFSVGMGVGINATTKVFSQGNTQNTDVKTDLAIEGDGFFII-----SRDRGETKNY 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ ++ + T + + I+++ Sbjct: 116 TRDGEFLFDAKGNLVTNGGYVVQGWNRPPIDQGSGSTMTDNEFFKVDNTGPLESIQIDPG 175 Query: 162 NLRR-------FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + D + K ++ + + Sbjct: 176 MVMPARPTSKVTLRANLSAGRHVDDVVNVSALDSTTYTAADGISPKYDSKGNLTQMAEDF 235 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKM---NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + D L E ++++ N+ T E + ++++G VS S + Sbjct: 236 GALFNADGDSFALNENQGFWMSYKTSRLVNNVVTTKEPSVLYLNGQKVSFTNDSGLSGTS 295 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 A + V + + + + + + + + Sbjct: 296 TLAAAVSAINAVRDKTGIEAYVDNGQLRLENRNEMDGDENTKNIIVTKSGTGAFANFVEG 355 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 ++P ++ Sbjct: 356 DKDITAFRYRYTKSNDPDSTTGQFKTTEDLRA 387 >gi|254462557|ref|ZP_05075973.1| flagellar hook protein FlgE [Rhodobacterales bacterium HTCC2083] gi|206679146|gb|EDZ43633.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium HTCC2083] Length = 1399 Score = 95.5 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 54/431 (12%), Positives = 116/431 (26%), Gaps = 15/431 (3%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 T R+ + A + +G+ + S D + S L Sbjct: 982 SGTTGKAVRANKAMGVETDQKASNIQVGRYEIDASTGLAITGDGTIDLASRVLADGKSHL 1041 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + S E K+ A +++ V A+ + + ++ + Sbjct: 1042 MGVGSTVSVGFLEGTGLKSEPAKAIGGPAKDPLNSQPVFLNPANFETTFNVSVNGVNA-- 1099 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 N I + L+QR ++ I + ++ Sbjct: 1100 ------NIEIPGGNYIGTTLAELLEQRINQMRDPETGQTIGGVTVKYQP---TENNFVFT 1150 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 T + + P+ + V + A + I + +V Sbjct: 1151 TGTTGDTSTIRVKGPAKLGLDDVPLSVGSVPTIAKLVQATNENGIPLYVNENGDIVDTEP 1210 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + L L E P + + + + Q + Sbjct: 1211 DNLVADYYPLYLDEGELTFDKTGKLISPQGMTRYESQ--SDSFSISLDIDFSSSTQLATP 1268 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + N+ L +Y + NK +A N L + Sbjct: 1269 FAVNNLEQNGFTSGRLDGLNIDATGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNA- 1327 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++E S + F I V++ EEL LI ++++ S+K I Sbjct: 1328 -TFVETATSGEPLIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIET 1386 Query: 468 TDKMLQTLLEG 478 + ++ QT++ Sbjct: 1387 STQLTQTIINI 1397 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 49/435 (11%), Positives = 99/435 (22%), Gaps = 25/435 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55 F A N+A ++ NI N + R + Sbjct: 2 SFYTALTGLNDAQSDISTSSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + +A+ Q F ALK Sbjct: 62 KGVKQQFTQGNIASSLNALDMAISGQGFFALK----PSQTSTQVVYTRNGSFNVDNNRNV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S L ++ V SA ++ D + + LS N Sbjct: 118 VDSSGQFLLTYPVNEDGSVTAKDIDSATPLRLPVTSGDPQATTNVD-----LSVNLPANA 172 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT--TLFETVPR 233 + + D + F D D S I + N VY + + + Sbjct: 173 EVAMEKDKFRDGYTF-DPDDPESFTNSTSFTIFDDLGNPTIATVYYIKTQAASAEDPTNK 231 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 +N V+ + P D + P+++ Sbjct: 232 FETRLVINDEVVSPDLVPALNDNGNQIYIDQFGNQTTTVPDPSYFAGRSAPLYKLDELRT 291 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + + I + D Sbjct: 292 RLPSQPAILTGEQSGFDFGDEGSREIEIVTDPMLFGATYEADAANQGVYWGNDFLLVNLD 351 Query: 354 GGSVSKKFL---WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G+ N ++ +S++ + G + + + ++ G Sbjct: 352 DGTRPVSISIRPGNYNAEELASEVERAINESYDDARKVEVRKGGEDTINIQLFTPSTDGD 411 Query: 411 LEKNRSDSHDLHMKS 425 + S S DL S Sbjct: 412 VPVANSVSIDLLEPS 426 >gi|269796390|ref|YP_003315845.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542] gi|269098575|gb|ACZ23011.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542] Length = 394 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 31/381 (8%), Positives = 87/381 (22%), Gaps = 14/381 (3%) Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR---RFLS 168 ++ +I Q +T ++ + + + + Sbjct: 16 QTMLDVTGNNIANVNTTGFKASQTQFKDTLSQVLTNAGGAQGGVGGTNPAQVGLGVQLAG 75 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 T T D D V+ + S + + + T++G + Sbjct: 76 VTTNFQQGAAQVTNRSTDMMISGDGFFVVSKNGENFYTRSGAFDFDANGNLVTAEGALVQ 135 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 D + + + +P + RD V Sbjct: 136 GWAAVDGVVDPNGALAPLRLPTSVLNPASATTQVGFDGNLPSDAAVGTVLNRDVEVYDAL 195 Query: 288 NQLDEMARVLIGSF-----SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + + + + + L + + Sbjct: 196 GNARNITLTFTQAAGAAGAPNQWQLTTSDGGAAQPVAFNADGTLASPGTVTVDGVAVSLA 255 Query: 343 QYRSNPSFLRDGGSVSKK---FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + +I + + + V Sbjct: 256 DVTGFAKLTSIETASKDGQRAGSLQSFTINADGTIIGAFSNGLKSPVGRIALGTFANPVG 315 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + + S + + V+L +E + LI ++ + Sbjct: 316 LEKAGGSLYTT--TVNSGEAAIGTAGTGGRGSLVGGALEMSNVDLSQEFTNLIIAQRGFQ 373 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++++I +D++LQ L+ + Sbjct: 374 ANSRVITTSDELLQELVNLKR 394 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/286 (9%), Positives = 58/286 (20%), Gaps = 14/286 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 +L + NI N + + T + V Sbjct: 1 MLRSLFSGISGLRTHQTMLDVTGNNIANVNTTGFKASQTQFKDTLSQVLTNAGGAQGGVG 60 Query: 54 ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + + A + + Sbjct: 61 GTNPAQVGLGVQLAGVTTNFQQGAAQVTNRSTDMMISGDGFFVVSKNGENFYTRSGAFDF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLS 168 ++ + R + A ++ NL + Sbjct: 121 DANGNLVTAEGALVQGWAAVDGVVDPNGALAPLRLPTSVLNPASATTQVGFDGNLPSDAA 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 TV+N ++ A + + L + T V + TL Sbjct: 181 VGTVLNRDVEVYDALGNARNITLTFTQAAGAAGAPNQWQLTTSDGGAAQPVAFNADGTLA 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 ++ ++ VT + I+ + ++ I A Sbjct: 241 SPGTVTVDGVAVSLADVTGFAKLTSIETASKDGQRAGSLQSFTINA 286 >gi|271500066|ref|YP_003333091.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] gi|270343621|gb|ACZ76386.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] Length = 399 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/473 (8%), Positives = 103/473 (21%), Gaps = 76/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N AS I NI N+ + + V Sbjct: 2 SFSQAVSGLNAASSNLDVIGNNIANSATVGFKASNISFADMYAGSNVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L ++ + N S ++ + + + Sbjct: 50 -------------LGTKVASVLQDFGNGSINNTSRALDVAINGNGFYRLLDTNGSVVYSR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + R + + + + + Sbjct: 97 NGQF--------------TLDSSRNIVNSQGLQLTGYPATGTPPTIQQGASPVALSIPET 142 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ ++ +T + T ++++ NF T Sbjct: 143 TMSAKATSTASIIANLNSSDSTNTWNATDPTNTSNYKGSITTYDSLGNAHNFGLYFVKTA 202 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + D + + Sbjct: 203 ANSWDVYAQDTSISGAGFQGPTT-----------------------------------LS 227 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + Q + S Sbjct: 228 FNSSGALTTTTPATISMATLNGSAASTFTLAFTGTVQQNSGSNSTKTPTQDGYAPGELTG 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +++ ++ Y +S + +A L N W + S + + Sbjct: 288 YSISDDGTVVGSYSNSKTQVLGQIALANFANPEGLSPQGDNV--WAATSNSGQAVVGLAG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + V++ +EL +I +++Y + + I D++L TL+ Sbjct: 346 SGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 398 >gi|146294550|ref|YP_001184974.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145566240|gb|ABP77175.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] Length = 395 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI NA + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIYNG---------------- 45 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 GQ + + + + + + Sbjct: 46 ---------GQAGGVSVMSTTQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + +Q +A +I+ + + A Sbjct: 97 AGMFHKDSQGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + I+ + ++ T++++++ + + T Sbjct: 148 TQVGLVSNLDARVD------PITVAFDPKDINSYHSIGTTSVYDSLGAEHVVTQYYVKTA 201 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E + + V + + Sbjct: 202 PNEWTVNY--------------------------------------TLDGVQLTEQTTLT 223 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + A + + + QY + + Sbjct: 224 FDAKGVLDPTTTKQAFDLTLPNGASNLQFEINFDKSTQYAAKYNNSSLSQDGYTSGELKG 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L L Y + + +A + L + N W+ N + S Sbjct: 284 VRLDDNGMLYGTYTNGQEQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGAPS 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 342 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395 >gi|59889780|emb|CAH19136.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli] gi|284920044|emb|CBG33101.1| lateral flagellar hook protein (FlgE-like) [Escherichia coli 042] Length = 400 Score = 95.1 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/475 (9%), Positives = 106/475 (22%), Gaps = 77/475 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG----TA 57 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + ++ + + + Sbjct: 58 QSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNIS-----------------------Y 94 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + E + +A D L+ + + + Sbjct: 95 TRAGSFETDKNGYIVNASGAYLQGYPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLIFTA 154 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D D + N S TT+++++ + + + + T Sbjct: 155 NFDASDDAIDR----------TTVPFDPTNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTS 204 Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + DG + + L Sbjct: 205 DNTWEVQYTFDGQQQTGVPAMTLTFDPNTGKLT--------------------------- 237 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 D ++ QY S S + + N Sbjct: 238 ----------SPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQN 287 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + Y + +A L + W++ S + + + Sbjct: 288 GVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVP 345 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 346 GSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 >gi|254419105|ref|ZP_05032829.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196185282|gb|EDX80258.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 588 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/446 (9%), Positives = 113/446 (25%), Gaps = 9/446 (2%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 R T+ N N+ S+ E D Sbjct: 148 RSVNIGSVGGTAEPTTRVQINANLRSTQ---AVSSPAAPTNYNGVEDAAVPPVKHDITVG 204 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + +L+S + V +++ Sbjct: 205 YKRTGANTFEVTLKSGITKIVGTATYDATGALTGFVPSAASSANGSATANATTLTITPTS 264 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + + ++ ++ + G+ + N + Sbjct: 265 GTPPVNGTPYAIDFAEIGMATNGVAQTKYDPSVNSMAMYNADDDTPAGVKPDFKMNIPVS 324 Query: 219 VYTSDGTTLF----ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 L ++ + + ++ S + + + P G++ Sbjct: 325 DSKGGQRNLEIRFLKSAEPNQWYAEIVSAPADDVVTGAPYSNGQIKTGLIAFTPSGRLDV 384 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + + S + + + ADG+ + + Sbjct: 385 ETMQSWPAGTGLFDDPTQATLSFLESDPNNTIDPADPLDNGKVKWADGLGIAAQTVMLDL 444 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + Q + + + + + + + + + +A Sbjct: 445 NTSAGGLSQLNTASVVQSTVTNGTAFGNLSEITIDESGFVTAIFDNGVMRRIAQVAIATF 504 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + +L E + N + S + +L I+ + V+L E + LI Sbjct: 505 PSPDSLKEVSGN--AYAVSLESGTFNLKAAGTGGAGTIAAQQLESSTVDLSAEFTGLITT 562 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y+ S+K+I D+ML L+ + Sbjct: 563 QRAYSASSKIITTADEMLAELINIKR 588 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 40/432 (9%), Positives = 92/432 (21%), Gaps = 17/432 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRSEN 59 + S A+I +NI N + Y R + + + + Sbjct: 1 MLAGVSGLAANSAALAAISQNIANVNTVGYKRSQGEFQTLVNSQTRAGGSYSAGGVMANT 60 Query: 60 KNMFDK--VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + L +++ Q F + R Y KN Sbjct: 61 RAFVSQEGQLQRTTASTDLAVSGQGFFVTTTQAENVGATDTRLFTRAGAFRVDNLGYLKN 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + L +D+ E+ + + +R E N Sbjct: 121 SAGLYLQGWPVDSNGEIATDPSDLSRLRSVNIGSVGGTAEPTT-------RVQINANLRS 173 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-LFETVPRDIN 236 +S ++ D + + I + N V G T + T D Sbjct: 174 TQAVSSPAAPTNYNGVEDAAVPPVKHDITVGYKRTGANTFEVTLKSGITKIVGTATYDAT 233 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + S + + D + Sbjct: 234 GALTGFVPSAASSANGSATANATTLTITPTSGTPPVNGTPYAIDFAEIGMATNGVAQTKY 293 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 S A + + + + I N + + Sbjct: 294 DPSVNSMAMYNADDDTPAGVKPDFKMNIPVSDSKGGQRNLEIRFLKSAEPNQWYAEIVSA 353 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + G + + + + + ++ +LE + + Sbjct: 354 PADDVVTGAPYSNGQIKTGLIAFTPSGRLDVETMQSWPAGTGLFDDPTQATLSFLESDPN 413 Query: 417 DSHDLHMKSQVV 428 ++ D Sbjct: 414 NTIDPADPLDNG 425 >gi|312115280|ref|YP_004012876.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] gi|311220409|gb|ADP71777.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] Length = 413 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 51/478 (10%), Positives = 108/478 (22%), Gaps = 67/478 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N + + S +++ NI N Y R T + Sbjct: 1 MSLYGLLNTSASGMAAQSTALSTVADNIANVSTTGYKRASTEFST--------------- 45 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 L A S A Q + + S + S + ++ + S Sbjct: 46 ------LVASSGAGNYQSGGVDVDTRVAIGSQSGTTSTSSSTDLAVDGNGFFIVSGPNGT 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + + N + + +S+L + Sbjct: 100 PALTRAGSFEKQADGTLENAAGYTLLGYPVGTTPSANSYAGLEEVNISDLAMKAVPSTEG 159 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T + + D + + + + Sbjct: 160 TVTFNLPLQATAVTDATKLPSANAADATYTQKTSF------------------------- 194 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + + N + K + + L Sbjct: 195 -----------TAYNNAGTAVNLDAYYTKTADNTWEVSVYNQADATAGGFPYSSGALATE 243 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D + L I ++ + + Sbjct: 244 TLTFDSTTYALTSPTSLSIPVPNGSTVVLDISKSTQLDAKYT--------FSANVNGNAA 295 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ L Y D + P+A + + + + N +L S S Sbjct: 296 SAVKSVEISDDGTLSVVYEDGSSVAAYTIPLAMVASPDNMTVISGN--AYLPNQDSGSVQ 353 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F I V+L EL+ +I+ + Y + K+ +L+ L+ Sbjct: 354 IGTAGTNGFGTIGSYTLENSDVDLATELTRMIQSQNIYQSNAKVFQTGSDLLKVLVNL 411 >gi|333008278|gb|EGK27752.1| flagellar hook protein flgE [Shigella flexneri K-272] gi|333019768|gb|EGK39040.1| flagellar hook protein flgE [Shigella flexneri K-227] Length = 390 Score = 94.7 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 45/465 (9%), Positives = 99/465 (21%), Gaps = 79/465 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFMLDENRNLLNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q+ + I + + + +N Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S+ + T +N T+F++ + Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D +S+ L+ Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + + Q + + + K Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 F ++ V+L +EL +I +++Y + + I Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKT 390 >gi|144900453|emb|CAM77317.1| Flagellar hook protein FlgE [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 38/414 (9%), Positives = 96/414 (23%), Gaps = 5/414 (1%) Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 ++ G + + + + T D+L K + Sbjct: 282 TTAINGTTYTFNTTSGTSGATAGTFYADPGSTANTGAFVDALAGEMKRAFNLEYNSLAVS 341 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 V S + ++ + A+ K + Sbjct: 342 IPGAVGAADTFSVTINGTTTNLSTLVQGTASASAAAAALNASTTFSALGLKAFANGTNGK 401 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 + + G + T V + + + Sbjct: 402 LHIYSESAMTFDVAGTGAMATASWRDGNSATALTSKTTDGIVYAERLAGTDSLIFRQRDG 461 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + S + + N + I + P Sbjct: 462 VDAITVAGLNSLDLADGNSATLQGQDPSDTNGFTVAAINITGNTSEDAIEFNGDGTPKEI 521 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVK 366 N + + + + Q + + +K + Sbjct: 522 NVAFIDVDWANGSNDMSGTDSIGFFLGNLDIRDGMSQLDGDYQLGYWNQNGAKFGNFAGV 581 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + + + + PVA + + N ++ + S L Sbjct: 582 SIGSDGIVTALFDNGVTRAVFQIPVATFVNPNGMQSLSGNV--FIGTDFSGEPTLRGAGS 639 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ S V++ EE + +I +++Y+ + K+I D+ML L+ + Sbjct: 640 AGAGQINASSLEASTVDIGEEFTTMIVTQRAYSAAAKIITTADEMLDELVRIKR 693 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 49/444 (11%), Positives = 110/444 (24%), Gaps = 31/444 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + + S +I NI N + Y SP Sbjct: 1 MSLYGALFSGVSGLASQSSAMGAISDNISNVNTVGYKGARVNFQTLVTKQTSITAYSPGG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V ++ + +L A +S+ Q F + E + ++ + + Sbjct: 61 VQSKPRQGVD---VQGLLQATNSSTDIGMSGQGFFIVNEA-ARPENGDMFAYTRAGSFKV 116 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E Y +N+S + + + + Q + ++A D N ++ Sbjct: 117 DSEGYLQNVSGWYMQGWPLMSWDNSQQASQVTVGNNVFMKAYKDDTGNTVYINDNVVSAD 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + L S++ I T+++ Sbjct: 177 HL---RPLNMNEVGGTASQTRNLRMGANLPNNSDVGDI-------------FKQPVTIYD 220 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ D + S + + + V S A+ ++ P Sbjct: 221 SLGGDATVQFSWSKVAQNRWDLEGVPPVGAKSMSLKKDSSTVYSAMGRLDFLGEPKTTGA 280 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +F+ +G + N +Y S Sbjct: 281 LTTAINGTTYTFNTTSGTSGATAGTFYADPGSTANTGAFVDALAGEMKRAFNLEYNSLAV 340 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + F + + S + + + + L +A + G Sbjct: 341 SIPGAVGAADTFSVTINGTTTNLSTLVQGTASASAAAAALNASTTFSALGLKAFANGTNG 400 Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433 L + + S Sbjct: 401 KLHIYSESAMTFDVAGTGAMATAS 424 >gi|83591885|ref|YP_425637.1| hypothetical protein Rru_A0546 [Rhodospirillum rubrum ATCC 11170] gi|83574799|gb|ABC21350.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 661 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 43/409 (10%), Positives = 114/409 (27%), Gaps = 6/409 (1%) Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS-KNLSEDILGKTVIDNAEEV 134 Q F A + ++ S T +S + + + + L + ++ Sbjct: 255 SQNGETYFAAGRLDFTSVPDAGTSVTINMSGTAYTFNFVAGADSASTTLAAAGAASPFDI 314 Query: 135 VQNFNTSAREVQKIRADA-DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 T ++ + K+ + + + I KT A + Sbjct: 315 SVAGRTLSQVLDKLGDAVENASRNAYAAEYTIPAPPADGLVGTITGKTFPTRWAERVSGE 374 Query: 194 RDVLLQKISEIIGISTIVR--NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 +L ++ SE ++ +P+ K++ V + P Sbjct: 375 NAILFRQGSESDTMTVDTSLLKTGSQPAVIQTNPIDSAGLPQPWTVRKLDGPDVLAAGLP 434 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + S S + + + + S + + + Sbjct: 435 MTSPAQWRGSWVNSNRVSASARDYPSAITFNGDGTPDTMFGYDEIGAASARSEVRLDWGN 494 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + G + Q S + +K ++ ++ Sbjct: 495 GALNMDGSSAPPGSPAISQFWGNYNSGDGITQRDSAYQLNYISQNGNKFGNYSGVSIGED 554 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + + P+A + + N + E + S + + Sbjct: 555 GVVTALFDNGVTTPIFMIPIATFVNPNGMNSLSGNV--FQETDNSGLPTVRAAGEASAGT 612 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++++ V+L E + +I +++Y+ + K+I D ML L+ + Sbjct: 613 VNQATLEASTVDLGSEFTNMITTQRAYSAAAKIITTADDMLDELIRIKR 661 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 39/426 (9%), Positives = 86/426 (20%), Gaps = 32/426 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL + S +I N+ N + Y SP Sbjct: 1 MSLYGALFSGVSGLQAQSSALGAIADNVTNVNTVGYKGTKVNFQTLVTQQVSLTAYSPGG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + +L A +S+ Q F + Y + Sbjct: 61 VQSKPRTGVD---VQGLLQATTSSTDIGISGQGFFVVSGQAIDPTGYA---YSRAGSFKV 114 Query: 110 SLESYSKNLSEDILGKTVIDN---AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + Y N + +DN ++ + + + + + Sbjct: 115 DKDGYLMNSGGYYMQGWPLDNWDGTAAASTVTKNGNVYMKSYKTGSGDTYYINPNAVDNT 174 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT----- 221 +N A+ + + S+ + + YT Sbjct: 175 NMRPINLNTIGGTARATSTLSIGANLPSAANIGSTSKTNALIFDSLGTPHNMNYTWTKRA 234 Query: 222 ---SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 D R ++ N T + F ++ + Sbjct: 235 QNVWDAEVTPPQGARQVDMLSQNGETYFAAGRLDFTSVPDAGTSVTINMSGTAYTFNFVA 294 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI----KDLDNKLCQGI 334 + I + + + G+ Sbjct: 295 GADSASTTLAAAGAASPFDISVAGRTLSQVLDKLGDAVENASRNAYAAEYTIPAPPADGL 354 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 TI + ++ + + L+ AG+ Sbjct: 355 VGTITGKTFPTRWAERVSGENAILFRQGSESDTMTVDTSLLKTGSQPAVIQTNPIDSAGL 414 Query: 395 NTNVTL 400 T+ Sbjct: 415 PQPWTV 420 >gi|27381969|ref|NP_773498.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27355139|dbj|BAC52123.1| flagellar hook protein [Bradyrhizobium japonicum USDA 110] Length = 410 Score = 94.3 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 42/480 (8%), Positives = 94/480 (19%), Gaps = 70/480 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL V + + S + +++ NI N + Y R T + S Sbjct: 1 MSLYGVMRTGVSGMSAQSNKLSTVSDNIANVNTTGYKRASTEFSSLILKSGSGNYDSGAV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + + + + Sbjct: 61 ETTVRYAISDAGHTQFTT-----------------STTDLAVQGNGFFVVSNANNTQQYL 103 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 G V D +V + + + + V Sbjct: 104 TRAGSFVPDAQGNLVNAAGYYLLGQPGKVTNFSQNSLSGMQIVNIAQVSQVPVPSTAGTL 163 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T D + S I + + T Sbjct: 164 TTGNLDPKAAVIAGPPGPASYSSKSSIVAYNNIGQAVTLDVYMSHT------ATAAGSDT 217 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + + + + +A KG + A P + + Sbjct: 218 WQIQAYNSATGTSVGAATTFTFDTTATGKGALAAAS-------PTTLSFTVPGGAAVTMD 270 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 S + S P+ + Sbjct: 271 LSNMTQTGTDFSFKA--------------------------TVNGSAPAAIDKVDVDDAG 304 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + L P G + + S + Sbjct: 305 HVTAILKNGQQMTLYTIMLADVPSPDNLTPEPGNVYSTNMN--------------SGNAQ 350 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L +EL+ +I+ ++ + ++K +L ++ + Sbjct: 351 AGNAGTGGLGTIQSGALEDSNVDLADELTGMIEAQRGFTANSKSFQTGADLLDVVVNLKR 410 >gi|120597305|ref|YP_961879.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120557398|gb|ABM23325.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 395 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 80/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI NA + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIYNG---------------- 45 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 GQ + + + + + + Sbjct: 46 ---------GQAGGVSVMSTTQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + +Q +A +I+ + + A Sbjct: 97 AGMFHKDSQGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + I+ + ++ T++++++ + + T Sbjct: 148 TQVGLVSNLDARVD------PIAVAFDPKDINSYHSIGTTSVYDSLGAEHVVTQYYVKTA 201 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 +E + + V + + Sbjct: 202 PNEWTVNY--------------------------------------TLDGVQLTEQTTLT 223 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + A + + + QY + + Sbjct: 224 FDAKGVLDPTTTKQAFDLTLPNGASNLQFEINFDKSTQYAAKYNNSSLSQDGYTSGELKG 283 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L L Y + + +A + L + N W+ N + S Sbjct: 284 VRLDDNGMLYGTYTNGQEQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGAPS 341 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 342 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395 >gi|206558968|ref|YP_002229728.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198035005|emb|CAR50877.1| flagellar hook protein 1 FlgE1 [Burkholderia cenocepacia J2315] Length = 413 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 44/469 (9%), Positives = 101/469 (21%), Gaps = 61/469 (13%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + N + + L++ Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVN--TQIGIGTSLNS 63 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 GQ + + +L ++ + + S + + + Sbjct: 64 VQQQFGQGTINTTNSSLDVAINGN-----------GFFQMSNNGVTTYSRDGTFQRDKNG 112 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + + L+ + T + + Sbjct: 113 FIVDSQGRNLMGYAANAGGVINTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVPTKT 172 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 D + I + + + + +Y + Sbjct: 173 PFSATDNTTYNYTTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ------------- 219 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 G + G I++ + Q Sbjct: 220 -----GGATTDLGTITFDTSGAIQSTTTGTPATPTASLGQFQ------------------ 256 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + Q ++ + QY ++ Sbjct: 257 ----------FTVPNTDGSATPQKLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTYSIG 306 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 L +Y + +A N L+ N E S + Sbjct: 307 ADGKLTGNYSNGQTAVLGLIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGSTNH 364 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QTL+ Sbjct: 365 GTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 >gi|313681187|ref|YP_004058925.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] gi|313154047|gb|ADR32725.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] Length = 445 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 51/477 (10%), Positives = 112/477 (23%), Gaps = 35/477 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + I N+ N + + T + Sbjct: 1 MTQGYYTGISGIQANQYGLDVIADNLANTNTVGFRGSSTEFAS----------------L 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F + L + SA + L+ + + T + L + + +S Sbjct: 45 FSEKLVSSGSAPTYDEIGAG-TRLQATTMNTQNGSLLNTDRFNDLAINGNGWFGVVSGQD 103 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T N A R + + + + L F + A T Sbjct: 104 RYFTRAGNFVLDEYQKTDGAANSSVGRLTTTEGMYVTGTMLNNFAYDSQYNYSAKSDVTD 163 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + V L +E I R TS N+ Sbjct: 164 TGAFKITASLNT-VPLTDANEQGPIELPTRLAYPTEPTTSTKFYGNLGTDVAERTMSANA 222 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + +++ N I + + V + +V+ Q Sbjct: 223 ISPSNDQNRIKLVFTQSAVQPDQGVSWDVVATASSNDGTVLYDTQ--------------- 267 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 N F I + + + Sbjct: 268 -YGTAVFNEGGGLESFSLPTINNDGAPVSVDLGSAFGGVISSAGPTISASSQSDGISGGT 326 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N ++ ++ + + V + L + + + Sbjct: 327 LNKYSINSDGIIVADFSNGKQSTIGRIAVYHFQNDQGLTRSGSTLFSQSDNSGNPMFWTD 386 Query: 423 MKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V IS + V ++ L+ +I ++++Y + K + D+M+Q L Sbjct: 387 ANGEAVTGTTISSGHLENSNVRMEVGLTDMIVMQRAYQANAKTVTTVDEMIQKALSM 443 >gi|238028842|ref|YP_002913073.1| flagellar hook-associated protein FlgK [Burkholderia glumae BGR1] gi|237878036|gb|ACR30369.1| Flagellar hook-associated protein [Burkholderia glumae BGR1] Length = 664 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 54/446 (12%), Positives = 118/446 (26%), Gaps = 24/446 (5%) Query: 16 NASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDK 65 A + +NI N Y + S P VT VT + + Sbjct: 14 AAQWGINTTGQNISNQATPGYSVERVVYAESDGQYTPNGFLPSGVTTVTVQRQYSQYLSD 73 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L+ +A A IS L++ S + S Sbjct: 74 QLNTAQAASSSLSTYSQMVATLNNYIGSPT--GGIASAISSYFSGLQNVSASASSAASRA 131 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T I NA + ++ E +R + +++ ++ + +++ +N I + Sbjct: 132 TAISNAATLANQLTSAGSEFDALRQSVNTQLQSSVTQVNSLTTQIAQLNQQITVASQGGQ 191 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + LDQRD L + ++G +V++N + V ++G L + Sbjct: 192 PPNQLLDQRDHALATLQTVVG-VQVVQSNGNYNVQMANGQPLVVGNTSYTMSAVPSPSDP 250 Query: 246 TSESNPIFIDGVVVSSN------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + + GS + G I L+Q R + + +L +A Sbjct: 251 SELTLGLQNTAAGSGAAGQMQVLTGSNITGGTIGGLIQFRSQTLDPAEAKLGAIAVSFAS 310 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + ++ + ++ G + + D Sbjct: 311 QVNAQNALGIDANGNVGGDLFSVATPQTIANTNNTGDATITASFANGQQPPTSDYTLSYD 370 Query: 360 KFLWN-----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + G + + + TL G+ Sbjct: 371 GTSYTLKDRYSGGVIGTATSLPATLGGLKLSVDDATKLKAGDSFTLEPTRSALNGFASVG 430 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTV 440 + + + Sbjct: 431 TPSTIAAASPVLATVGTSNAGSAAIT 456 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 42/412 (10%), Positives = 100/412 (24%), Gaps = 11/412 (2%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 + ++++ + + I +L+ L + NA+ Sbjct: 256 GLQNTAAGSGAAGQMQVLTGSNITGGTIGGLIQFRSQTLDPAEAKLGAIAVSFASQVNAQ 315 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + + I + ++ + Sbjct: 316 NALGIDANGNVGGDLFSVATPQTIANTNNTGDATITASFANGQQPPTSDYTLSYDGTSYT 375 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYT------SDGTTLFETVPRDINFEKMNSYTVT 246 +D + + V D TL T F + + + Sbjct: 376 LKDRYSGGVIGTATSLPATLGGLKLSVDDATKLKAGDSFTLEPTRSALNGFASVGTPSTI 435 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + ++P+ ++ + P + + + G+ + Sbjct: 436 AAASPVLATVGTSNAGSAAITPGTVTAGYQMPSTTTTLTYNAASKSLTGFPAGTTVTVNT 495 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 +S + G S +N S G V + Sbjct: 496 TPPSSYPITGSTTQVPYDSTAGASLTITSTVQPPPSGVMNNVSMQITGSPVDGDTFTIAR 555 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 A + ++ +FD TL + + + + Sbjct: 556 GGASNDGRNAQALSNLVRSKVFD-----GGTSTLTTAYGSYVNGVGNTAAQLSAASTAQT 610 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I++ + GVN EE L++ +Q Y + K+I + TLL Sbjct: 611 ALVSQITQQQQSVSGVNQDEEAVNLMQYQQMYQANAKVIQTASTLFSTLLGI 662 >gi|254785371|ref|YP_003072800.1| flagellar basal body protein FlgE [Teredinibacter turnerae T7901] gi|237685119|gb|ACR12383.1| Flagellar basal body protein FlgE [Teredinibacter turnerae T7901] Length = 813 Score = 93.9 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 55/444 (12%), Positives = 117/444 (26%), Gaps = 13/444 (2%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + T+ S N N+ + S Q L +L P+ Sbjct: 373 ASATTTATLSNLNSANDNLTVTLNSVQLSGDSLQALEAEINSLTNSTLPGISAALDPSGG 432 Query: 104 ISKLRDSLESY------SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + ++ S + + I + +++Q SA Sbjct: 433 ALVITSAVGDDIRVSITSTDPGDSITVRGDQAAPAQILQVPPVSAGNYDADNNSIVVGGS 492 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 +E++ + + V + F+ + A + DV L + + ++ Sbjct: 493 IELTLDEGYSMQNAVPDAVGIFQPFTSDPAD--PEFTDVTLNAFDPTDQGTYNSATSMNV 550 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---A 274 + + R + + + IDG V S P I+ A Sbjct: 551 YDSLGVSHIMTQYFVRQEYDPNDPTTSPNHWVMHVQIDGRNVGDPDTSLPPPANIEPTLA 610 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + L E + ++ + + I + Sbjct: 611 SFNVFFNENGTLNELLTEDMLISNWVVLDQQGNPTGAMGPQNVLAGGSIVIPEPPTSSNF 670 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + Q ++ S + + + Y + + +A Sbjct: 671 VIELAGTSQSGTDFSVDDTDQDGYASGRLSGLAIDENGVIFARYTNGEGQPLAQVALADF 730 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L W E S ++ I V+L EEL LI Sbjct: 731 TNQQGLQPIGNTM--WAESFASGPPNVGTPQSGALGAIQSGALEESNVDLSEELVRLIIA 788 Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478 ++++ S K I D++ QT++ Sbjct: 789 QRNFQASAKTIETADQVTQTIINL 812 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 37/401 (9%), Positives = 88/401 (21%), Gaps = 6/401 (1%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 FN A + AS NI NA + R + + + Sbjct: 3 FNTALSGIRAASTDLTVTGNNIANASTIGFKRSRAEFGDVFATSVLGAGANAIGSGVQVE 62 Query: 67 LHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 A + + + + Y N L Sbjct: 63 DVAQNFKQGNVAFTQNELDLAINGNGFFVLSDQGTPVYSRAGTFGLDDQGYVTNNVGARL 122 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 D+ + + + + +E ++ + Sbjct: 123 QGFQADSTGNISGISDDILIQTSNLPPRQTTLVESVLTLDSTEPVLQSTGRRFTTLGNVI 182 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D L + + ++ G + + IN + Sbjct: 183 GVTQAGLRDATTTNLTSNTFTLPLANDFATTPMTFDIQLSGASSGKNGTVSINLDIGEGV 242 Query: 244 TVTSES--NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 T + + + GV+ S +P+ I + D ++ + + Sbjct: 243 PATINAFNDLRTLTGVINSQIFSPTLPQTAIDVVANAVDYGGGVYGIEFTALQEGEGSQI 302 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P N + + + +++ ++ G+ + + Sbjct: 303 QINTPS-ANMNQIGLNPATTSVAGIPAVDNGYPQQSVDFVDPDGDIVTYTALAGATAART 361 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + G N N D + +V L Sbjct: 362 ASEMNAIQGISASATTTATLSNLNSANDNLTVTLNSVQLSG 402 >gi|326392863|ref|ZP_08214093.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991095|gb|EGD49857.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 89 Score = 93.9 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 45/84 (53%) Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 T ++AR+ I L + ++ + QV+ I + + GV+L EE++ ++K + Sbjct: 1 NGATFDDFARSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMLKYQ 60 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 +SY S ++I D++L TL+ + Sbjct: 61 KSYVASARVITVMDELLDTLINRM 84 >gi|170744543|ref|YP_001773198.1| flagellar hook protein FlgE [Methylobacterium sp. 4-46] gi|168198817|gb|ACA20764.1| protein of unknown function DUF1078 domain protein [Methylobacterium sp. 4-46] Length = 407 Score = 93.9 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 50/480 (10%), Positives = 121/480 (25%), Gaps = 73/480 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSLL + N S + +++ N++NA Y R T + + + Sbjct: 1 MSLLGALRTGMSGMNAQSNRISTVAENVQNAGTTGYKRVSTEFSSLLLSSSATG------ 54 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + S ++ + Sbjct: 55 --------------DYNSGSVETVQRRAVSDEGARVSTSSKSDLAIAGNGFFVVKDASGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + + F +A + + + +++L + Sbjct: 101 SYLTRAGNFVPDGSTGTFKNAAGFTLMGYSLKNGQASPTLNSLDG-----------MVPV 149 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 S + L + T ++ + + + + Sbjct: 150 NISALGMKASASTKGALTGNLDSTAAAVTSGAVPAGSNYSKKTSLVTYDNLGKAVTLDIY 209 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + D +S S + + Sbjct: 210 LTKTGDNAWSASVYDASNSASFPASPLTTIPLG--------------------------- 242 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + G + + L ++ + ++ SK Sbjct: 243 ----FVNGKVTSGGTGSVTVPNGQPVSLDLTGMTQ---------LASATDIKGSADGSKA 289 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 A + Y D+ P+A +++ L A N S + Sbjct: 290 SAVTGAEFAADGTVYAVYEDNSKVAAFKIPIADVDSPDNLKPRAGNVYET--TLESGALQ 347 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +Q I V++ EL+ +I + Y ++K+ M +++ML TL++ + Sbjct: 348 VGFANQGGRGGIVSGALEQSNVDVSTELTSMIASQTVYTANSKVFMTSNEMLDTLMQLKR 407 >gi|170742312|ref|YP_001770967.1| flagellar basal body FlaE domain-containing protein [Methylobacterium sp. 4-46] gi|168196586|gb|ACA18533.1| flagellar basal body FlaE domain protein [Methylobacterium sp. 4-46] Length = 456 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 50/491 (10%), Positives = 103/491 (20%), Gaps = 46/491 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53 M + + A + + +I NI NA Y R DT + V Sbjct: 1 MDVFSAMQTAVSGLQAQAFSLNNISGNIANAQTTGYRRIDTTFADLLAEQPNDRQTSGSV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109 S+ N + + F + + Sbjct: 61 AASSQFTNTLQGNIASTGITTNMALNGGGFFVVRTPSATSGGQPSFTSQDLYTRRGDFAV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + Y N + L +D Q + A A I + S Sbjct: 121 DKDGYLVNGAGSYLVGQSLDPRTGQATGNGVIRIGNQALPAQATTTISYAAN----LPST 176 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A+ A S+ + + Y++ G + Sbjct: 177 PGTTGPAVLGALAGGDVRVMSGTSASPATVAASDSGSFLASSLSGGSLTAYSAAGGPVNL 236 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + ++ N + S + G P Sbjct: 237 QLRWAKVAAADSAAGTGDTWNLFYAKQNGTDSTATAWTNAGTAFTFNASGQLTTPA---- 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + L S + + Sbjct: 293 ---------------------GGSATIPNVTVDGVPLGTLTLNTASGGLTQYGAAGGQVT 331 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + S + + Y + +A N L + Sbjct: 332 TNTLQQNGSASGTLRSLAVTSDGRVTGTYSNGTTATLAQVGIARFNAPDALKAES----- 386 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 L S + + + E S LI +Q+Y+ + +++ Sbjct: 387 -LGNYAQTVESGGPVSGLAGTTVVGGNVEQSNTDTANEFSKLIITQQAYSANTRVMSTAQ 445 Query: 470 KMLQTLLEGVK 480 +M+ L+ ++ Sbjct: 446 QMMSDLVNIIR 456 >gi|163785037|ref|ZP_02179764.1| flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879693|gb|EDP73470.1| flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1] Length = 166 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 1/152 (0%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + I + + Q + GG + L+N + A S Sbjct: 15 YAKDIKLSPSIKIQNDTGNFISSIGGINNYTSLYNPEEKALLTTTTGLQIGSTYYKLNSI 74 Query: 390 PVAGINTNVTLLEYARN-SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + + E + SD+ + ++ + + + GVN+ EEL Sbjct: 75 DNLSLLDTKSFQELYTKKFTSEIGFEISDAKNRLDANKNLRDAVQSKIEEKSGVNVDEEL 134 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+K +++Y + K+I TD++LQT+L VK Sbjct: 135 VNLMKYQRAYQSAAKIINVTDELLQTILGLVK 166 >gi|83576781|gb|ABC23332.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 472 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 51/481 (10%), Positives = 120/481 (24%), Gaps = 37/481 (7%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--------RSEN 59 N A + N S ++I N+ N+ Y + + + Sbjct: 21 NVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGVVASATQ 80 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + V+ + + + + +++ Y + + N + Sbjct: 81 NVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELY----YTRAGDFYPNADGDLVNSN 136 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D + N S ++ I S + Sbjct: 137 NYYLQGYPTDRNGVPLTNTGNSGASLETINLAGATGAAKATSEMSIQAVLPAQATAGDST 196 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 D ++ + + ++ + D Sbjct: 197 AVPPVAAYTSSSDVEIYDSLGVAHTMTVKWTKMSDTKWTMTLYDPK-----------LSS 245 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T + V +N G I ++ D + + L Sbjct: 246 DMTGDATGAISSTTTGVTDVPANAGPPATSHGIAVDVEFTDQGLLKTPSVL--------- 296 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + P A N IA + + + + + G Sbjct: 297 -ALKITPDASNGTGAAISEIALNLGTAGKANGLSTYSNEDSDGKPAVDLKKVVQDGVTYG 355 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N + AG + ++ + + P+A + L + + +S + Sbjct: 356 TYYSNTISKAGL--VYANFTNGISYPIYQVPLAMFSNVNGLEAV--SGTAYSATVKSGTP 411 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V+ E S LI +Q+Y+ + ++I +M Q L+ Sbjct: 412 TYVTAGTGGSGGVSSGSVESSTVDTAAEFSKLIVSQQAYSAATQIISSNQEMFQNLISAK 471 Query: 480 K 480 + Sbjct: 472 R 472 >gi|218670905|ref|ZP_03520576.1| flagellar hook-associated protein FlgK [Rhizobium etli GR56] Length = 283 Score = 93.6 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 156/281 (55%), Gaps = 15/281 (5%) Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GK 271 +NNDMV+ T DGT LFETVPR + F+ + YT + N ++IDGV + +GS G Sbjct: 1 DNNDMVLSTPDGTILFETVPRKVTFKSQDVYTASIVGNSVYIDGVALPLGKGSTTTGQGS 60 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 +++LLQIRD + P FQ QLDE+AR L+ F E++ A + + G D Sbjct: 61 LQSLLQIRDEIAPNFQKQLDEIARGLVSLFKEQNTAAPPAYVPGLFTWSGGTIDTGATAV 120 Query: 332 QGISETICVN----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 G++ TI V+ +P LRDGG + + N ++GY ++ + + + Sbjct: 121 AGMASTISVSTRVITSQGGDPMRLRDGGVNATGVVLNTSGVSGYTAELDRLYTAMSADID 180 Query: 388 FDPVA----------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 FDP A GI++NV+++EYA NSIGWLE+ RSD+ + + E+YS Sbjct: 181 FDPAAGAPVGFDATTGIDSNVSIMEYATNSIGWLEQYRSDATSASETTAAALSRSDEAYS 240 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 N GVNL EEL+ L+ +EQSY + K++ D+M Q+LL+ Sbjct: 241 NETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQSLLDI 281 >gi|47566136|ref|ZP_00237174.1| flagellar hook protein flgE, putative [Bacillus cereus G9241] gi|47557053|gb|EAL15383.1| flagellar hook protein flgE, putative [Bacillus cereus G9241] Length = 409 Score = 93.6 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 45/480 (9%), Positives = 105/480 (21%), Gaps = 73/480 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + NI NA Y ++ M + + Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLSED 121 ++ + A +S +M + + T K + ++E + D Sbjct: 46 YNNSIGAKGDGNYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGD 105 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 G + + + + + + I T Sbjct: 106 SKGGNMEFTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVD---LSGIPGPLQIPMGT 162 Query: 182 ASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 A + + S+I + N + T + Sbjct: 163 AIGGIQTTKGTIKGNIPVNESKITQDLPFYDDAGNTWTMRVEFTKTSEHEYTYKVQRRND 222 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + E + N + A + + Sbjct: 223 SVKDSKFEEVTGAGSTGTLKFNNVGNPNPVQQGANIPFNGGTI----------------- 265 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D +T+ V + ++D Sbjct: 266 ----------------------NLDFSKLTNHPTDKTLSVTDVDGRAAATVKDCFIADGG 303 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ + F N T N+ G L S + Sbjct: 304 YVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTAT------NTTGILALGASGQNG 357 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 358 AGK--------IRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 409 >gi|322832564|ref|YP_004212591.1| flagellar hook-basal body protein [Rahnella sp. Y9602] gi|321167765|gb|ADW73464.1| flagellar hook-basal body protein [Rahnella sp. Y9602] Length = 414 Score = 93.6 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 67/476 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + + AS I NI N+ + + +N Sbjct: 2 SFSQAVSGLSAASTNLDVIGNNIANSATVGFKTATASFADMFAGSQTGMGVKVAAVTQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D S + F L + + N+ Sbjct: 62 NDGTTTNTSRGLDVALSGNGFFRLTDT------SGAVYYSRNGQFSLDANRNLVNMQGLS 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + ++ +N +A Sbjct: 116 VTGFP-----------------------------ATGTPPTIAAGAQPVALNIPTTLMSA 146 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + I S+ + + V + + ++ F K ++ Sbjct: 147 KATTVGTMVANLNSTDTAIPAAKTFSSSDDTSYNYVNSITTYDSQGNAHDNNVYFVKTSA 206 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + G GKI A+ + N L + Sbjct: 207 NNWDVYAQDGSVTGS----------TAGKIGAMQFDTSGALVSTTNAAGVANAGLALTLP 256 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 G G Q + S Sbjct: 257 MNTATNGTVTPQTVSLDFTGS-----------------IQQSTGSDSIGSQTQDGYAAGQ 299 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y ++ + ++ + L N W S Sbjct: 300 MTGYTINDDGTISGTYSNNKTQLLGQIVLSNFSNPEGLKSEGDNV--WTATASSGQAVTG 357 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Q ++ + V+L EL +I +++Y + + I D +L TL+ Sbjct: 358 IAGQGGLASMTSGALESSNVDLSAELVNMIVAQRNYQSNAQTIKTQDSILNTLVNL 413 >gi|255601427|ref|XP_002537672.1| Flagellar hook-associated protein, putative [Ricinus communis] gi|223515502|gb|EEF24710.1| Flagellar hook-associated protein, putative [Ricinus communis] Length = 274 Score = 93.2 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 95/281 (33%), Gaps = 18/281 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQ 55 ++ N A + + ++ +NI N K Y R+ + T + V+V Sbjct: 2 SILNNALSGAIASQLALSASSQNIANLQTKGYTRQGALLTALAPSTGAKEAGNGVSVTAL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + +S +G + Q + E + DD N + I +L + + Sbjct: 62 MRFSDSYKTQQMWRSASDLGARSQTQPYLTQLEQVMGDDTAN--LSSGIDGFFAALNAVA 119 Query: 116 -KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + L + V+ A + Q FN+ ++ I + ++ + +N Sbjct: 120 GVDPTSTPLRQQVLTAAGLLAQRFNSMNNVYNAQLQSVRQQRTALIDSANSTIASIAALN 179 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I A+ +A +D RD + ++ +G+ + + V G +L Sbjct: 180 AEIANANATGSNASTLIDARDQAIDSLASQMGLEVSDQPDGTRDVSLKTGQSLVLGGIAG 239 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + S + + + G++ L Sbjct: 240 RLSVS------GAASQTFSLTFADTKFDLDTTRAGGQLGGL 274 >gi|227871683|ref|ZP_03990096.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268] gi|227842482|gb|EEJ52699.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268] Length = 594 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 32/306 (10%), Positives = 90/306 (29%), Gaps = 27/306 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + F+ A + ++ + N+ N + + Y R++ T+ Sbjct: 5 TFSGFDTALSALRMNQKKLDVVGHNLANMNTEGYTRQELKTSSINYENPTSFYMNSNDVN 64 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + R D + + + D+ N Sbjct: 65 VGFGVAMDEVRQLRDQFLDGQYRTQNGKSSYNESIGESLKSLS-LFLDETKVNGIRSSFD 123 Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD-------ADKEI 156 ++ SL + + + ++ + + N++A + + + + Sbjct: 124 DIQRSLTNMQDPSKVQDPVYEGELMSRVQAMTTLMNSAAESIHQAEKNEFHKIDGTNTSE 183 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 I + +S++ +N+ IK + A + DQR++ L ++S+ + I + Sbjct: 184 NGAIQKINSLVSDIGDLNNRIKKNQLLGNPALELQDQRNLKLDELSKYVPIEVEHFSEEY 243 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 N + + + N ++ D + + + Sbjct: 244 SSPTPPTTRYRIYNYDSAGNVKGRSDWPEDVRVNLVYRDSSAGNGTEVKKITLVNGAIDA 303 Query: 277 QIRDSV 282 ++D+ Sbjct: 304 DLQDAS 309 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 5/210 (2%) Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKL 330 +KA ++ + +LD +A + +E + N V I + Sbjct: 389 LKASNEMNSYSYDFYMGKLDLLAETFTKNMNEVNKKGNTNYAGVTNPNHVLMINKDNAGG 448 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + T R + G+ + + N D + + Sbjct: 449 NDPSNVTAANIGISRGWVNGTTHIGTNGFRNGASATNRGDTTDTVLEMLEQMTSPM---- 504 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + NT +Y N L + + + ++ V I+ S GV+L EE + Sbjct: 505 MKMNNTKTNYADYMNNVSTTLATDSYANKNAQEINKAVLEGINNSRDQLSGVSLDEEAAN 564 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ SYN + +L+ + L+TLL + Sbjct: 565 MMTYSSSYNAAARLMTTLNDTLETLLAIGR 594 >gi|328545575|ref|YP_004305684.1| FlgE protein [polymorphum gilvum SL003B-26A1] gi|326415316|gb|ADZ72379.1| FlgE protein [Polymorphum gilvum SL003B-26A1] Length = 418 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 54/485 (11%), Positives = 124/485 (25%), Gaps = 72/485 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE-- 58 MSL+ N A + SQ +++ N+ N+ Y T T T + Sbjct: 1 MSLMGALNSAISSLYAQSQALSNVSSNLANSQTTAYKASSTSFTSLVAGTTSSSSGGVVA 60 Query: 59 ---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +L + SS+ F + +S + + Y Sbjct: 61 STRSSVSEQGLLVSSSSSTHLAIEGSGFFVVSSEVSG----GQTYYTRNGEFEIDANGYL 116 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N +LG + V S + + ++ + Sbjct: 117 TNGGYYLLGWATDASGNPVAGTSEASLVPIDVDSVKSSVGATSNVT-----------MQA 165 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + A ++ D L + + + N +M TL Sbjct: 166 NLPADAAVGDSFDTTIEVYDSLGTTNTITVTWTKTDANTWEMSFADP---TLAGGTAASG 222 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + G + + + + N L + A Sbjct: 223 TVTSTPVTITFNSDGTLAVTDPSPAELTIAGWTTGAADSAIALNLGTLGAA-NGLTQYAS 281 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + I + Sbjct: 282 GSTDPYIAIQSITQD--------------------------------------------- 296 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + + + PVA L E + + Sbjct: 297 -GLAYGALTGVEIGADGSVTAFFDNGEQRVIYKIPVATFPNANGLTEMSNGIYAR--SSY 353 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + LH+ I+ Y + E S ++ +Q+Y+ +++++ +++M Q+L Sbjct: 354 SGNSTLHLAGTGGVGTINGGYLEASTTDTSTEFSRMLTAQQAYSAASQILSASNEMFQSL 413 Query: 476 LEGVK 480 ++ V+ Sbjct: 414 MQAVR 418 >gi|134300239|ref|YP_001113735.1| hypothetical protein Dred_2400 [Desulfotomaculum reducens MI-1] gi|134052939|gb|ABO50910.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 856 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 48/438 (10%), Positives = 101/438 (23%), Gaps = 4/438 (0%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 PEN+T + N + K + S + ++ Sbjct: 421 TVPENMTATNATAGNVTITGKYSDTSDGTVSVVYSEGSATTTPDPANSLAGSPTVNASKY 480 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + N + D L + + + D +N Sbjct: 481 YNTPATWNLKYDNATSDWLLDKGDGTGYNSITFTGDIYTDPSGVEIDKTGLTPTSDNNWD 540 Query: 165 -RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S ++ T S D + + + + + ++ Sbjct: 541 ISLTSGSISISGVSGAVTLSNGDTSATYNGLTIDVSDVISTGTVQNGDTWTYNVKADKPS 600 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + F + + S I I V KG A +D + Sbjct: 601 TNVAVTWNIDHLEFSTVGTPKDGSTIPQIRIKDAVDLIGYVDRTEKGVNSADWSEKDFFI 660 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + A + + + I I + K+ + + Sbjct: 661 EYNGAKYTFTAGEKKEAGFGNIISGESLKIALEKLIDKKIGENKIKVDYMNDGKLVLQTI 720 Query: 344 YRSNPSFLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + L + Sbjct: 721 DNGEIGETPSVNIGGSHAADLIGDKPDKVDGEAASVTPPPQDTMGVIKLVTFQNPEGLEK 780 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 RN G S +Q F I+ Y V+L EE + +I ++ Y + Sbjct: 781 AGRNLFGT--SVSSGEPKQGQANQSGFGTINSGYLEMSNVDLTEEFTNMITTQRGYQANA 838 Query: 463 KLIMFTDKMLQTLLEGVK 480 ++I +D +L+ L++ + Sbjct: 839 RVITVSDSLLEELIQLKR 856 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 36/446 (8%), Positives = 102/446 (22%), Gaps = 28/446 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + NI N + Y + Sbjct: 1 MLRSLYSGISGMRNHQTRMDVTGNNIANVNTNGYKSSRVNFQDT---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + + ++ ++ + + T + + S + + Sbjct: 45 LSQTVRSAGNGTNPAQVGSGMSVGSVSNNFTQGPMQSTGRTLDLGIQGNGFFVVS-DGTN 103 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLSELTVVNDAIKF 179 + + I ++ N VQ + + + +S + + N A + Sbjct: 104 EFYTREGIFFVDKQGFLVNGEGLRVQSLAGQDIRVLNGPVSTINIGPDGAIAGTNTAGQP 163 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S +D+ + K + + + + L E + + Sbjct: 164 LKFSNNDSQAIITPAQQSSIKGAPKYTTPKVEEATIKGIAMSPVTQPLEE---AMVRGDS 220 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + + G + + Q+ + Sbjct: 221 NSPDVAPLGITDSVTPIDMSTDQLTLKYSDGT-----NTYTATLNTGLTQVKSWYDLASQ 275 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + I D G+ + + GG+ K Sbjct: 276 LQNAINTYENPPGSGTFPLKDKVIVSYDGSPNGGLVFQTKTSNVTPGVIPSIEIGGAGVK 335 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 +++ V A + + VT ++ G D+ Sbjct: 336 RYMGGVATSALSDTGKEVVTKDWTGKTFYIDTGNGWEQVTTVDDFSKIGGAAGSTGLDAV 395 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQ 445 + ++ + G N+ Sbjct: 396 TSGEDLAQKLQALLDARTTIPGTNIT 421 >gi|157959902|ref|YP_001499936.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157844902|gb|ABV85401.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 402 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 45/474 (9%), Positives = 113/474 (23%), Gaps = 73/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + +Q +I NI N+ + + + Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNV-------- 53 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + S + Sbjct: 54 -----------------MSTSQNFSMGGSLTYTGRQLDMGIQGEGFFVLSGQDGSTSYAR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + N + + + +Q A + + V D A Sbjct: 97 AGMFNQDADGYITDPAGNRLQGYSIGATGNL------------QNGNVTDLQVQTGALAA 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A + L ++ I ++ ++ ++S F+++ + + T Sbjct: 145 QATSTIGLTSNLDARVEVIDPATSPFDPDDASTYHSSSTIAAFDSLGNEHALTQYYVKTA 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 ++ + + + G E D Sbjct: 205 DNKWSVHYNMDGTDVTPVGGH----------------------------------TLEFD 230 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + ++ + + QY ++ + + N Sbjct: 231 SNGMLTTGNDITLNITDAAIIGGASNMELALSFDKSTQYAADYNNSSLNQNGYTSGELNG 290 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + L Y + + +A + L+ + N W N + + + Sbjct: 291 IRIDDNGMLYGTYTNGQEQIQGQVVLADFSNPNGLVPTSNN--AWTASNAAGQPIIGTPT 348 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S Y V+ E+ L+ +++Y + K++ M Q LL + Sbjct: 349 TGTLGGLSAGYLEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402 >gi|86136709|ref|ZP_01055287.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193] gi|85826033|gb|EAQ46230.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193] Length = 388 Score = 92.8 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/443 (10%), Positives = 111/443 (25%), Gaps = 60/443 (13%) Query: 42 MTTISPENVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEM--MSADDHYN 97 + S + + N + D+ L +++ + + + + + Sbjct: 2 VVGSSGGRYSAGGVSASNMRLIDQRGPLVGTNNSTDLAVSGRGMLPVASLTEIEGGNGSP 61 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 R + + Y S +L + V +A ++ ++ + ++ Sbjct: 62 TMLMTTTGSFRTNADGYLTTNSGLVLLGWPANPDGTVSDGPRDTAEGLEPVQYNMNQLTG 121 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 +N+ VN A + S+ +GI+ Sbjct: 122 EPTTNV------GLGVNLPATDTEAGSAGTVRNMTVEYYDNLGSSQTLGITYTP------ 169 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + +T ++ + G + S G + ++ Sbjct: 170 -------------TVPATGTSNEWTMQITDSASGGAVIGEYTMTFNDSRTAGGSLASVTA 216 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + + + A D + Sbjct: 217 VSGGAYDPATGSVVVNVDGGPMEINLGMIGESDGFTQLSDTFAPASVTKDGSEVGTMVGV 276 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 Y + K L +V NL G L N Sbjct: 277 EVDPQGYVRANYDSGASRVIFKIPLVDVPNLNGLKSLDNQ-------------------- 316 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 +L + S S+ L ++ ++ EL+ +IK +++ Sbjct: 317 -----------TYLPSSDSGSYFLWDAGDGPTGEVASYAQEESATDVATELTDMIKTQRA 365 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y+ + K+I D+MLQ + Sbjct: 366 YSSNAKVIQTVDEMLQETTNIKR 388 >gi|46205094|ref|ZP_00049039.2| COG1256: Flagellar hook-associated protein [Magnetospirillum magnetotacticum MS-1] Length = 271 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 9/269 (3%) Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKG 270 R N D+ +YT G TLF+ PR + F +++ ++ + + IDGV V+ + + G Sbjct: 3 RANGDVALYTDGGVTLFDRGPRAVGFAPTSAFAAGTKGSAVIIDGVAVTGAASPMPLASG 62 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +I L +RD ++ QLD +A LI +F+E D + GLF A G L Sbjct: 63 RIAGLAALRDQTAVTYEAQLDALAGGLIDAFAETDAVPPLGAPKAGLFTAGGSATLPAAS 122 Query: 331 C-------QGISETICVNPQYRSNPSFLRDGGSVSKKFLW-NVKNLAGYPDLINHYCDSF 382 I+ V+P + + LR GG ++ A Y + + Sbjct: 123 AAGRTGLASTIAVNAAVDPDRNGDLALLRSGGMNGTDYVDPAAGGDAAYTGRLRGLVSAL 182 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + DP + T L A S GWLE R D+ + + +E+ SN VGV Sbjct: 183 GQTRSLDPALDLGTASDLPSLAAASAGWLEAQRKDASASASYQKTLLTRANEALSNVVGV 242 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N +E + +++E+SY+ S K+I D + Sbjct: 243 NGDDETALALQLERSYSASAKIIAVIDDL 271 >gi|182680457|ref|YP_001834603.1| flagellar hook protein FlgE [Beijerinckia indica subsp. indica ATCC 9039] gi|182636340|gb|ACB97114.1| flagellar basal body FlaE domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 415 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 47/480 (9%), Positives = 117/480 (24%), Gaps = 65/480 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + + S + +++ NI N++ Y + DT + Sbjct: 1 MSLYSALTASVSGMAAQSNKLSAVSDNIANSNTTGYKQADTEFETLVNGL---------- 50 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + S + S + + + + Sbjct: 51 -----------NKTSYDAGGVKTTIRYNISSQGQLTSTSSATDLGIQGNGFFVVTDDSGT 99 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L + NT+ ++ + + L Sbjct: 100 KYLTRAGSFTKNADGTLSNTAGYKL--MGYNLTSGSASSADGLGGLEVVDLTSAGLQAAP 157 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S A + + + + ++ + +V Y + G + + Sbjct: 158 STSGTLAVNLPSNGNAITTALPSANSATSTYNSKTSLVTYDNLGNAVTLDMYFAKTGTNS 217 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ + ++ G +++ S Sbjct: 218 WEMSIYNAADAAAGGGFPYATSALS----------------------------------- 242 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 G Q + + Q + S + + Sbjct: 243 -----TQTLTFSPSDGSLTTPTSASFTIPNGQAFTLDLSQTTQLAAGFSVSAQNANGNAP 297 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 ++ L Y + P+A + + L+ N + S S Sbjct: 298 SGLKSISIGTDGVLSKVYQNGTTVAAYKIPLATVASVDNLMVGTGNV--YEANGDSGSII 355 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I S + V+L +L+ +I ++ Y ++K+ +L L+ VK Sbjct: 356 IGDAGTNGLGSIQSSQLESSNVDLAAQLTDMIVAQRGYEANSKVFETGSTLLTELVNLVK 415 >gi|134283656|ref|ZP_01770355.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] gi|134245065|gb|EBA45160.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] Length = 404 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/465 (10%), Positives = 98/465 (21%), Gaps = 61/465 (13%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 AS I NI NA+ + + N Sbjct: 1 MAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN----------------- 43 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + S + + Sbjct: 44 ------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSN 85 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + Q + ++ +N A+ Sbjct: 86 NGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTAATVP 131 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 I+ + N + + VP F + + ++ Sbjct: 132 LQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTTSVQV 181 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 D + S N K + L + G+ + AG Sbjct: 182 FDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAGVPTT 241 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G F Q ++ + QY + ++ Sbjct: 242 NVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIGADGK 301 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + +Y + +A N L+ N ++E S + + Sbjct: 302 VTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNHGTLQ 359 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S V+L +L LI +++Y + + I + QTL+ Sbjct: 360 GSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 404 >gi|229918635|ref|YP_002887281.1| hypothetical protein EAT1b_2922 [Exiguobacterium sp. AT1b] gi|229470064|gb|ACQ71836.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 303 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 25/295 (8%), Positives = 74/295 (25%), Gaps = 5/295 (1%) Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 + + L + I ++T + + + +N V Sbjct: 11 GLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLVSQQVGSASAGNATTGGVNPKEVGLG 70 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 +D V + + + + + Q Q + Sbjct: 71 GTMATVDNVYNQGAMQNTGRALDVGISGEGFYATMVNGQIQYTRAGNFYTDNQGNLVTGD 130 Query: 309 GNSENVPGLFIADGIKDL---DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G + + + G + Sbjct: 131 GTYLIGSQTNTLPPSGVAGVAATPTAANMGANLDAPYLAADAGTQTVKYGRIKIPTDAKS 190 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + + + + + + N L + N +++ S + + Sbjct: 191 LSIGKDGQVSFVAANGELRIAGYIVTSNFSNNAGLSKVGAN--NFVQSQNSGAPQFGVPG 248 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 249 AGGRGELVSGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 303 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 26/147 (17%), Gaps = 27/147 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L + N + + NI N + Y + + Sbjct: 1 MLRAMYSGISGLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLVSQQVGSASAGNATTG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V T + + + A+ E A Sbjct: 61 GVNPKEVGLGGTMATVDNVYNQGAMQNTGRALDVGISG-------EGFYATMVNGQIQYT 113 Query: 103 YISKLRDSLESYSKNLSEDILGKTVID 129 + L + + Sbjct: 114 RAGNFYTDNQGNLVTGDGTYLIGSQTN 140 >gi|91791429|ref|YP_561080.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713431|gb|ABE53357.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 392 Score = 92.4 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 46/477 (9%), Positives = 118/477 (24%), Gaps = 96/477 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----VVTQRSE 58 +L F + N+ S+ ++ NI N + Y D+ + Sbjct: 1 MLQAFYTGLSGLNSYSKNLDNVSNNIANMNTAGYRGMDSFYQALGGDSDKPGLGAQISGL 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + F AL + + + + Sbjct: 61 GYRFSVGDIRQTGNDFDLAITGTGFFALLD-------GEKVFYTRTGQFEFDQNNVLVD- 112 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S ++ +I + + I+ + L+ ++D Sbjct: 113 -----------KNTGFKVAGIDSNGQLSEINLLSYQAIKPTATTKLSLTGNLSPLDD--V 159 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + +S + ++ D+ ++ +E N + + G L Sbjct: 160 HQISSAKMINSLGEEVDLSIKFTNE----KATFPNQWKVEILDDKGIVLH---------- 205 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 V G + + DS + Sbjct: 206 -----------------SDSVKFGPDGTPEVGSGSFIFNLADSSGNTTPIDITVGTIGDF 248 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + ++ +S L +G+ + + + + + G Sbjct: 249 SAVTQTSATGVDSN-----------VTLHAVDGKGVGQLVKRSFDPQGRVTLNYSNGDKV 297 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F + + L F + + V G + A +SI Sbjct: 298 TPFTIAMVDFDDISTLSIESGTVFKASDLESRVLGKAGEGRFKQLATSSI---------- 347 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 V+L +E + ++ +++ Y S++++ ++M++ L Sbjct: 348 -------------------EMSNVDLSQEFADMLVIQRGYQASSRILNVANQMIEQL 385 >gi|330863345|emb|CBX73468.1| hypothetical protein YEW_ES20630 [Yersinia enterocolitica W22703] Length = 298 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 85/251 (33%), Gaps = 12/251 (4%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58 AQ+ A ++ N+ NA+ Y R+ + V V + Sbjct: 6 IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 ++ SS Q+ + E DD N + +SL S S N Sbjct: 66 SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 S + VI+ A+ +V NFN+ + QK + D + IS + + N I Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + DQRD L++K+SE++ I + + +G L Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243 Query: 239 KMNSYTVTSES 249 S + Sbjct: 244 NTGSAQPQIDI 254 >gi|260767763|ref|ZP_05876698.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|260617272|gb|EEX42456.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] Length = 599 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 6/205 (2%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + V + + ++ G + ++ + Sbjct: 400 GSATFHIDQAGDVKEFEAYVVPVKDSDGNPTGNMQVRVQDKSGKVLLTQPYAFEDNQEEL 459 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 E + +S L G KF N+ G + + + + D Sbjct: 460 TLEIPKQDSDGKSTIFTLSRGAIADDKFTANLVPSDGDNGNLRKMINVQSNKTVDD---- 515 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 T++E N S + L +++ ++ GVNL EE + ++K Sbjct: 516 --KKSTIIELYHNLNTDFGLKLSTASRLTDVARLEKESAESRIASVSGVNLDEEAANMMK 573 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +Q+Y S+++I + T+L Sbjct: 574 FQQAYMASSRIIQAANDTFNTILAL 598 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 102/283 (36%), Gaps = 7/283 (2%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V R K L+ ++ +R + + + + Sbjct: 8 ETYGMGVHVENVRRSWDQFAVKELNLATTDYSFKRDNEENLDMLSKLLSSVASKK-IPEN 66 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 +++ DS+++ + ++ K V++ A + QN N V++ +K +++ I + Sbjct: 67 LNEWFDSVKTLADTPNDVGARKVVLEKAGLISQNMNDFHETVRRQFDVTNKGLDVGIERI 126 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTS 222 + E+ + + +D +DQ + L+ ++S+ ++ R N ++ Sbjct: 127 NQLAVEIRDLQRLMMRTP---GPHNDLMDQHEKLVAELSQYTKVTVTPRKNAEGFNIHIG 183 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 +G TL + ++ Y + ++G + + GKI AL+ +RD Sbjct: 184 NGHTLVSGTEASQL-KMIDGYPDVHQRRLAMVEGKALKPITARDI-GGKIGALMDMRDKH 241 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 +P +++ +A + + G I + Sbjct: 242 IPGLLDEIGRLATSFSYEVNRLQHQGLDLRGDIGADIFTDVNS 284 >gi|46204472|ref|ZP_00049951.2| COG1256: Flagellar hook-associated protein [Magnetospirillum magnetotacticum MS-1] Length = 181 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 3/158 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60 L F+ A Q + +NI N YVRR + V T Sbjct: 3 LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLSPVTSGTGNAGVATGTIARALD 62 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 K L + +S L + + ++ + SL++ + N + Sbjct: 63 TAALKQLRSENSGAAYTALKSGIHTQLDALYGKPGDASALDGVFNAFTLSLQTLAANPTS 122 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 TV+ A ++ ++ VQ +R+ K+ Sbjct: 123 TAARSTVLSAANDLATRIGSAGNGVQALRSGLQKQFSP 160 >gi|312111671|ref|YP_003989987.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|311216772|gb|ADP75376.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 268 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 2/174 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + + + L G + Sbjct: 97 SGDGFFVLEDANGTNRLYTRAGNFYLDAGDGTNRYIVSADGRYLLGTSGRIRIPVTAQSV 156 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + + + +A + N L + N + S + Sbjct: 157 SIGTDGTVSYVDANGQLQTAGKIRLAKFSNNEGLEKVGDNL--FRPTANSGDPQIGDVGD 214 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EE + +I ++ + + ++I +D++LQ L+ K Sbjct: 215 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 268 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/181 (9%), Positives = 37/181 (20%), Gaps = 29/181 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53 +L + N + I NI N + + + T+ S Sbjct: 1 MLRSMYSGISAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60 Query: 54 TQR-----------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + + F L++ + N Sbjct: 61 GVNPKQVGLGMQLAAIDTVHTQGSTQPTGRPLDLAISGDGFFVLEDA-----NGTNRLYT 115 Query: 103 YISKLRDSL----ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 Y + L T V + + DA+ +++ Sbjct: 116 RAGNFYLDAGDGTNRYIVSADGRYLLGTSGRIRIPVTAQSVSIGTDGTVSYVDANGQLQT 175 Query: 159 E 159 Sbjct: 176 A 176 >gi|78067837|ref|YP_370606.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77968582|gb|ABB09962.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 413 Score = 92.0 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/472 (8%), Positives = 93/472 (19%), Gaps = 67/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66 + AS I NI NA+ + N + + ++ Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSTNTQIGIGTSLNAVQ 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + I + + + + + L Sbjct: 66 QNFGQGTINTTSSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + + + + L+ + T ++ + Sbjct: 126 AANAGGVI----------------NTAQTVPLQAPTTNIAPTATTKISAQFNLNSQDTTP 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 D S I + + + + +Y + Sbjct: 170 TKTPFSATDNTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGSTTDLGTV 229 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + I + G+ + + D L Sbjct: 230 TFDSSGAIKSTTTGTPATPTTSVGQFQFTVPNTDGSATPQSLTL---------------- 273 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + QY Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + L +Y + +A N L+ N E S + Sbjct: 304 TIGADGKLTGNYSNGQTAVLGEIALANFNNPNGLVNLGGNQYA--ESAASGVPQISAPGS 361 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +++Y + + I + QT++ Sbjct: 362 TNHGKLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQAVDQTIINL 413 >gi|296274022|ref|YP_003656653.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098196|gb|ADG94146.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 487 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 46/499 (9%), Positives = 100/499 (20%), Gaps = 36/499 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQR 56 + + + AS NI N + + + V T Sbjct: 1 MNGSLYNSLSGIYAASNYVDVASNNIANINTIAHKEDRISFADQMYQNGIGKGVGAGTV- 59 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 NK+ + ++ + F L + N + S + Sbjct: 60 --NKSFRQGDVKDTNNQYDFAIQGKGFFILTD-----PETNLTYYTRAGNFTKSNDGTLV 112 Query: 117 NLSEDILGKTVIDNAEEVV---------QNFNTSAREVQKIRADADKEIELEISNLRRFL 167 N + A + + Sbjct: 113 NAQGLDVMGLQTKVISTTSSDGTIIFGDNYTQHLATSIITQEDRTISINAKATDYTKSAT 172 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 N+ + D + L S +S +VY L Sbjct: 173 DVGVSGNNYKSSDSVISDIELLKTDYNNKLKLLESNPNEVSVPSTLQKTNIVYEDYKADL 232 Query: 228 FETVPR------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + + E+ + + S + + Sbjct: 233 KNANDALEINIGNFSIEQNYDTDPLTTMKKFADKISDIQGYTASFDEATNTLTIDNLVAG 292 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + +I + ++ + + + N Sbjct: 293 RTSKVSIPIITSTTGVISDTPAVKGSGLAMVESSRDALNKAVQLANAQFLDVQNGIPAPN 352 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTL 400 S + + + + D I N A +L Sbjct: 353 QPTLELESINLQPTKIGLASYNDDTDFSVTSDGILLLTQGSNTYIAGRISTAYFPDEQSL 412 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N S N + +N+ L+ LI ++++ Sbjct: 413 NPEGDNLYTQ--TKESGEAKNADT----LNTVVSHSVEASNINVATALTKLIIAQRAFEA 466 Query: 461 SNKLIMFTDKMLQTLLEGV 479 S+K I +D L T ++ Sbjct: 467 SSKAITTSDSFLDTAIKLK 485 >gi|94987008|ref|YP_594941.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731257|emb|CAJ54620.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 690 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 33/388 (8%), Positives = 93/388 (23%), Gaps = 7/388 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN--TSAREVQKIRADA 152 + + + + + + + L + + Sbjct: 308 DSSGKLANQSAYSLNGSRKPAVDPATGALINGNGFTIDRDGNAIPILNIDNPAENFYPAE 367 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + ++ T + L D+ + +S++ Sbjct: 368 VSNNGFPMIVANFTGVPGKNTAGSVGDATTFFTEIDFGLKATDLDNTWKNANEPLSSLSY 427 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + G T+ + ++ NP + N + Sbjct: 428 KKTHNPMDVAGGWTVGGYKTPAPSVTELG--MAQILENPAGVMPQYYFGNPNYDNTVPQS 485 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + ++ A ++ + + +KDL N Sbjct: 486 PPYVYKNEASYQAAYKTALTAAGGTAADIKKEHWPHNAASGILEANDPPNVKDLANMNGT 545 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + L N ++ L Y + + Sbjct: 546 PNRLSNAFTNYAGGSSTKSASQNGYGFGDLMN-YSVNAEGVLFGVYSNGVQLPLYQVALY 604 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N+ L N S + F I+ + V++ E +I Sbjct: 605 DFNSKQGLRREGGNLFSQ--TRESGDPSSGAANTSGFGSINANTLEGSNVDISTEFVSMI 662 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++K++ D+ML+T++ + Sbjct: 663 ATQRGFQSNSKIVTTIDQMLETVVNMKR 690 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/414 (8%), Positives = 82/414 (19%), Gaps = 30/414 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 MSL A + + ++ I NI N + + + + Sbjct: 1 MSLTAGMWTGVSGLLSHGEKMNVIGNNIANVNTVGFKGQRMDFADFIYQDGFSTAGITQI 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + N + A + F +K S R Sbjct: 61 GRGVGIGAVMGNFGQGSFETTTEATDLAIGGRGFFKVK-----PQGSETSYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + Y + L IDN E + N Q + +I L+ + Sbjct: 116 NNDGYLVDPHGYALQGWKIDNTEGPQRISGGVNPGTNTSQIMGTGEPTDIRLDTWTVAPL 175 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + N + S + + L + + Sbjct: 176 QTTNVSFNVNLS-SDKSGDKSQNVNSPFTSLFNIWNGKQPSEPNNPPMPESAYSYQTSIK 234 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 +++ + + + D+ Sbjct: 235 VYDEAGGTHTLTVYFD----------QVSPKDYKGGGSGESVWEYVVTMDPSEDNRQVSV 284 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + ++ ++ +S A + + + + Sbjct: 285 GGNIVDIKDTKAAGMLMSGTLSFDSSGKLANQSAYSLNGSRKPAVDPATGALINGNGFTI 344 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + N + +F + + T Sbjct: 345 DRDGNAIPILNIDNPAENFYPAEVSNNGFPMIVANFTGVPGKNTAGSVGDATTF 398 >gi|172057880|ref|YP_001814340.1| hypothetical protein Exig_1871 [Exiguobacterium sibiricum 255-15] gi|171990401|gb|ACB61323.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 278 Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 4/235 (1%) Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 + G + G ++ + V I Sbjct: 46 SQSVGSASGNGGGVGGANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQ 105 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + D + G N P+ GG + N +N Sbjct: 106 TADGIRYARSGNFYTDLDGNLVTGDGNYVIGSDNAGPLGQPTIPLGGGYKTINIPANAQN 165 Query: 368 LAGYPDLINHYCD--SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 L+ D + Y D + + +A L + N S S Sbjct: 166 LSIGKDGLVTYVDPAGTLQQAGYISLANFPNPGGLEKSGSNMYSI--SQNSGQPTSATPS 223 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ V+L EE + +I ++ + + ++I +D++L+ L+ + Sbjct: 224 TNGLGQLTSGTLEMSNVDLSEEFTEMIIAQRGFQANTRIITTSDQILEELVNLKR 278 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 58/249 (23%), Gaps = 15/249 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 +L + N + + NI N + Y + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVVGNNIANVNTFGYKKGRVTFKDLVSQSVGSASGNGGGVG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 +M ++ A+ E + Sbjct: 61 GANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQTADGIRYARSGNFYT 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L+ + + + DNA + Q + I A+ + + + Sbjct: 121 DLDGNLVTGDGNYVIGS--DNAGPLGQPTIPLGGGYKTINIPANAQNLSIGKDGLVTYVD 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + L++ + IS+ G T + + + + GT Sbjct: 179 PAGTLQQAGYISLANFPNPGGLEKSGSNMYSISQNSGQPTSATPSTNGLGQLTSGTLEMS 238 Query: 230 TVPRDINFE 238 V F Sbjct: 239 NVDLSEEFT 247 >gi|332669198|ref|YP_004452206.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484] gi|332338236|gb|AEE44819.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484] Length = 392 Score = 91.6 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/381 (8%), Positives = 95/381 (24%), Gaps = 12/381 (3%) Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S ++ +I Q +T ++ +Q D + + + Sbjct: 14 SHQTMLDVTGNNIANVNTTGFKSSQTQFQDTLSQMLQNGGGAQDGVGGTNPAQVGLGVRV 73 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQ----KISEIIGISTIVRNNNDMVVYTSDGT 225 + + + + + D + Q D S + ++ +V +G Sbjct: 74 AGITTNFTQGASQMTGRSTDMMIQGDGFFVVRKGAESYYTRAGSFDFDSTGQMVLPGEGA 133 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVP 284 + + + + + V S+ + R V Sbjct: 134 LVQGWAAVNGVVDTNGPLSDLRVPAGTLMPAVATSTASYEGNLDAAAANGTILNRTIDVY 193 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TIC 339 + E+ + + A + D ++ I Sbjct: 194 DATGNVRELQLTFTKAAAGWSVAATDGTATVVAAPMTFAADGSLTTPTTLTVGGVAVDIS 253 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + S + L + + + + + Sbjct: 254 DLTGFAGIDSVKARTQNGQAAGTLQSFALGADGTITGAFSNGLKQTIGRLAIGSFTNPSG 313 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + + S + ++ V+L E + LI ++ + Sbjct: 314 LEKAGGSLFRT--SVNSGDPQVGPAGTGGRGTLAGGALEMSNVDLSSEFTSLIIAQRGFQ 371 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++++I +D++LQ L+ + Sbjct: 372 ANSRVITTSDEVLQELVNLKR 392 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/342 (7%), Positives = 66/342 (19%), Gaps = 19/342 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + + T + + +++ Sbjct: 1 MLRSLFSGISGLRSHQTMLDVTGNNIANVNTTGFKSSQTQFQDTLSQMLQNGGGAQDGVG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + S Sbjct: 61 GTNPAQVGLGVRVAGITTNFTQGASQMTGRSTDMMIQGDGFFVVRKGAESYYTRAGSFDF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E L + V + + +R A + ++ + Sbjct: 121 DSTGQMVLPGEGALVQGW-----AAVNGVVDTNGPLSDLRVPAGTLMPAVATSTASYEGN 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L + + R++ L G S + VV Sbjct: 176 LDAAAANGTILNRTIDVYDATGNVRELQLTFTKAAAGWSVAATDGTATVVAAPMTFAADG 235 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ S+ F V + + G +++ D + + Sbjct: 236 SLTTPTTLTVGGVAVDISDLTG-FAGIDSVKARTQNGQAAGTLQSFALGADGTITGAFSN 294 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 + + S +P + D Sbjct: 295 GLKQTIGRLAIGSFTNPSGLEKAGGSLFRTSVNSGDPQVGPA 336 >gi|163789641|ref|ZP_02184079.1| flagellar hook protein [Carnobacterium sp. AT7] gi|159875173|gb|EDP69239.1| flagellar hook protein [Carnobacterium sp. AT7] Length = 289 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 24/275 (8%), Positives = 75/275 (27%), Gaps = 6/275 (2%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + + T R + + + + N + V + + + Sbjct: 17 TKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQVGLGVQVGSIDTVMSG 76 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G +++ + D + + + ++ + ++ Sbjct: 77 GSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNGNLVTSGGLKVQGFVAN 136 Query: 330 LCQGISETICVNPQYRSNPSFL----RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + G + K ++ ++ Y + Sbjct: 137 PPAVNDTNFNPDTFVDGKTMSAITIPQSIGEGADKADLQSYSVDSKGFIVGSYSGGKSMV 196 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + L + N E S + + + + + + V+L Sbjct: 197 LGRVGLTSFSNPDGLQKSGGNLYT--ETANSGAPEAGSPGEPGYGSVRSGFLEMSNVDLA 254 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +I +SY +++ I +D ML+ L+ + Sbjct: 255 NEFTEMIVTSRSYQANSRSITTSDTMLEELINLKR 289 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 25/137 (18%), Gaps = 9/137 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 +L N + I NI N + + Q N Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQ 60 Query: 62 --------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 D V+ S + L E +N+ Sbjct: 61 VGLGVQVGSIDTVMSGGSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNG 120 Query: 114 YSKNLSEDILGKTVIDN 130 + V + Sbjct: 121 NLVTSGGLKVQGFVANP 137 >gi|295399817|ref|ZP_06809798.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978220|gb|EFG53817.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 334 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/267 (9%), Positives = 61/267 (22%), Gaps = 11/267 (4%) Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + V S++ + +A D Sbjct: 70 GSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAESADNTNFTNVRYTRAGNFYLDKD 129 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + + + DP P + S Sbjct: 130 GYLVTSDGYYVVGFAAYATGTYDPDGAAGATPPVNNVTLSPLPSAIDPKFDFSSNPPKYT 189 Query: 343 QYRSNPSFLRDGGSVSKK---------FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + ++ + + +A Sbjct: 190 GVAPTINNFTVNTGETTNVQYKPIKIPTDAQSVSIGQDGSITYVDRFGTLRWAGQLVLAK 249 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L + N S + L+ I V+L EE + +I Sbjct: 250 FPNNGGLEKAGANLYRD--TPNSGTPILNFAGAAGIGAIQSGALEMSNVDLAEEFTEMIV 307 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I +D++LQ L+ K Sbjct: 308 AQRGFQANTRIITTSDEILQELVNLKK 334 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/293 (8%), Positives = 69/293 (23%), Gaps = 30/293 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 +L N N + I NI N + + + T+ Sbjct: 1 MLRSMYSGINAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFQDLISQTISGASAPSQGRG 60 Query: 45 -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 +P V + +Q + + + F + E + + ++ N Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAES-ADNTNFTNVRYT 119 Query: 103 YISKLRDSLESYSKNLSED------ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + Y D + + + + D + Sbjct: 120 RAGNFYLDKDGYLVTSDGYYVVGFAAYATGTYDPDGAAGATPPVNNVTLSPLPSAIDPKF 179 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + T+ N + + D I + I+ + + Sbjct: 180 DFSSNPPKYTGVAPTINNFTVNTGETTNVQYKPIKIPTDAQSVSIGQDGSITYV---DRF 236 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + L + + + + ++ I ++ G+ Sbjct: 237 GTLRWAGQLVLAKFPNNGGLEKAGANLYRDTPNSGTPILNFAGAAGIGAIQSG 289 >gi|291280096|ref|YP_003496931.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1] gi|290754798|dbj|BAI81175.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1] Length = 817 Score = 91.2 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/443 (8%), Positives = 105/443 (23%), Gaps = 5/443 (1%) Query: 39 RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + V + +++ G + E + Sbjct: 379 QSAINDNVSTGFVVDYNNTSTGKFTYDNTSGNNNITGFSIDKAYSGTVFESNMVTSDTIS 438 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + S + L S + +L+ V + + + I + Sbjct: 439 VGNYTESNIFLRLASETDSLNNLYTNSGVSLGLDNNTTIQFDAQIGGDTPNGNGVNNISV 498 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + L L ++ ++ + + I S N Sbjct: 499 ANNTVGDLLDALEAYMALPTDSIQIENGKIKVTGEKGIPNSI--DYINFSATGPNTYATF 556 Query: 219 VYTSDGTTLFETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 TL + + + + ++N+ + Sbjct: 557 TDYMKYQTLQNASGGQLVTSQTIYDAQGNPHVVNYKFELYDEANNEWKLTIEPADSNDSI 616 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 D G + ++ + + G Sbjct: 617 SVDGTTGNTVIVRFNQDGSFQGVYDIFTNNVLSNLSYTLSPSNGASIMSGINVNLGTPGN 676 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 S+ + + ++ +++ Y + K +A Sbjct: 677 YDGMTLSASDSTITETDQNGYPMGSLERISVNDTGEIVGAYTNGEIKKIAQVGIAIFTNQ 736 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 LL+ E S + + I+ S V+L E +I ++ Sbjct: 737 EGLLKVGDTLFA--ETPNSGQAAVGQATTGGRGSIAASALENSNVDLAREFVNMITTQRG 794 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + ++++I +D++LQ L+ + Sbjct: 795 FQANSRVITTSDELLQELMNLKR 817 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 28/423 (6%), Positives = 89/423 (21%), Gaps = 29/423 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L N + I NI N + Y + Sbjct: 1 MLRSLYAGITGLNEHQKSMDVIGNNIANVNTVGYKTSRIVFQDLLFQTISGGKAPAGNLG 60 Query: 48 -----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + T + S + L F ++ ++ N + Sbjct: 61 GINPKQIGTGTSTASVDTIFTQGTLQNTGVTTDMAIQGNGFFVVRS-----ENENENYYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + Y I+ + D + + ++ + + Sbjct: 116 RAGNFTFDKDGYLVTPDGFIVQGWMADADTGEILTNTEVSDI--QLSSAYTSVPAKATTE 173 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + T I A + D+ ++ + + Sbjct: 174 VSLVGNLDTRAEPTILEFQPLMTTATSNDNIFDLYSSNGLKLDLVDGEPVRIKAHATDIT 233 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPI--FIDGVVVSSNQGSAVPKGKIKALLQIRD 280 D ++ ++ + + + N + + ++ L Sbjct: 234 DMAAVYNDNDVNLGLDSNPTLNLIVNGNSYALTYSSSTNADTANNDNQFHSVQGFLSELK 293 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 +++ ++ ++ + G + ++ + Sbjct: 294 NILDTESGGNYTVSISNGEINVQRVSGDLVINSFSGNPNLAALLQPLVGTYNSVNTSSTS 353 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 N + + S +++ D N + + N + Sbjct: 354 NSLFYEKVLTAGNDFSNLGDLAVQIQSAINDNVSTGFVVDYNNTSTGKFTYDNTSGNNNI 413 Query: 401 LEY 403 + Sbjct: 414 TGF 416 >gi|90021855|ref|YP_527682.1| ribonuclease III [Saccharophagus degradans 2-40] gi|89951455|gb|ABD81470.1| flagellar basal body FlaE [Saccharophagus degradans 2-40] Length = 804 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 42/443 (9%), Positives = 103/443 (23%), Gaps = 19/443 (4%) Query: 38 RRDTMTT--ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 R + + + VV+ + D L A Sbjct: 378 RSEATLSGFTNASGNIVVSVNDIALVVDDLADLEAEINALSTSSLAGITATVNAAGTAIT 437 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 ++ + + + L A + + Sbjct: 438 VTSAVGKDLKFAVSGGAGDAITVQGSTLSAAQTITAGGNGDTDAIVVGGAIDMVLEEGYS 497 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 +E + L + N+ + + + + + Sbjct: 498 LENAVPQLTGI-FQPFTANEFTPIVINAFDPTDQSTYNSATSMTIYDSLGNSHVMTQYFV 556 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 +D T++ + + + P ++S G + L Sbjct: 557 KQDYDATDPTSVPNHWVMYARIDDADVGDPDTTLPPPANTQPTLASYDVYFNEDGSLNTL 616 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 L + + + D + + ++ Sbjct: 617 --------------LTSDMLISNWTPVDADGNPNGALGPQNILAGGTQTVVEPPTSSNFV 662 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ++ Q+ S S + + N+A + + + + +A + Sbjct: 663 ISLEGTTQFGSEFSVNDISQNGFSTGRLSGLNIADNGTIFARFTNGQSLRLGQVVLADFS 722 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L W E S S ++ + V+L E+L LI + Sbjct: 723 NQQGLQPTGNTM--WAETFESGSPNVGTPGSAALGAVQAGALEESNVDLSEQLVNLIIAQ 780 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +++ S K I D + QT++ Sbjct: 781 RNFQASAKTIETADAVTQTIINL 803 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 42/408 (10%), Positives = 100/408 (24%), Gaps = 10/408 (2%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDK 65 F+ A + AS + NI NA + +V + + + Sbjct: 3 FDTALSGIRAASSDLSVTGNNIANASTTGFKASRAEFGDVYATSVLGAGVNAIGSGVQVQ 62 Query: 66 VL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + +G + E Y N + +L Sbjct: 63 EVAQRFSQGNVGFTENELDLAINGNGFFVVSQQGETLYTRAGSFGLDDEGYVVNNTGAVL 122 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 D A + +++ ++ + +L S V+ + + Sbjct: 123 QGFSADGAGNIGG----IQGDIRIQTSNLAPRQTTGVESLLNLDSTEPVLQTIGAEFSTA 178 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 R + + I+ ++N + + ++S Sbjct: 179 GTAVGVTQIGRQTAEKSTLLMDAITFPIQNLDTNPIIFDITLAGPTVGNNGTVTINLDSI 238 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 ++ + + +VSS + + SV + + Sbjct: 239 DFSTSIDDLTELQQIVSSINSQLYSPNGGADPIDVVASVGTDGLGNPAILFESIYEGELT 298 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 I+ + + PG A G+ D + S + Q + G++ + Sbjct: 299 DISISIDPASDPGNVAALGLDDTNVGTTGIPSVSNGYPLQT---VDIVGPDGNIVPFSIP 355 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 A +N ++G + + N I + Sbjct: 356 AGAEAASTASRLNELPGISATARSEATLSGFTNASGNIVVSVNDIALV 403 >gi|15895423|ref|NP_348772.1| flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|15025147|gb|AAK80112.1|AE007716_1 Flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|325509569|gb|ADZ21205.1| Flagellar hook protein FlgE [Clostridium acetobutylicum EA 2018] Length = 423 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 45/478 (9%), Positives = 109/478 (22%), Gaps = 55/478 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + + NI N+ Y + + + Sbjct: 1 MLRAMTSGISGLKVNQNKLDIVGSNIANSSTTAYKSQSINFSDA---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + S L + + N + Sbjct: 45 --------------------ISETIKGASGATANYGGVNPEQITLGVNSSAIITNTASGS 84 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + T + + AD + I + ++ S + + + + Sbjct: 85 VNTTGRNLDVAITDGDGYFMVASGANMADESECINVSTTDH-SITSTPSGTDISYTRDGS 143 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 D L D ++G +T+ ++ D + + Sbjct: 144 FNLDNEGNLVTADGRKVLGYSMVGRNTLYEDSADKTKNIYGNFVSISGAQDETTMAGSDE 203 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + D P G A ++ D + + + Sbjct: 204 NAATYIAAEGGDDLNKSIVAAVDKNPSGSGTATIKKGDVAFVDANDVDLRADNRYLHTLK 263 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 P + + +G S + G ++ Sbjct: 264 I--PPTVTKVTATRDASGNAVYSTQELKVKGFSIGQDGVITANLDNGSAAAIGQIAMSSF 321 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N L S + + + T + A+ Sbjct: 322 TNAGGLEKEGGNYVKPSASSGQPMVRSGAYSNKLDPTFISSAKK---------------- 365 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + V+L ++ S +I ++Y + K+I +D++LQ L+ + Sbjct: 366 EDNSGGYGKMYSGALEMSNVDLAQQFSDMIVASRAYQANGKIITTSDEILQDLVNLKR 423 >gi|219681705|ref|YP_002468091.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471401|ref|ZP_05635400.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624548|gb|ACL30703.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 543 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 39/334 (11%), Positives = 114/334 (34%), Gaps = 18/334 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54 + + N A + N + + I N + + + +N V V Sbjct: 1 MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57 Query: 55 QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ +Q ++ L++++ +N + ++ +E Sbjct: 58 IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 +++ + + +V ++++ + D + + + + E+ + Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174 Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ K ++QRD L+ +++ +IGI I ++N + ++G ++ + Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ S V+ +P + ALL+ R + +N++ Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 ++ S + I + G I + + Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQP 327 >gi|78043762|ref|YP_359848.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] gi|77995877|gb|ABB14776.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] Length = 261 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 74/279 (26%), Gaps = 21/279 (7%) Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 S GIS + + M V ++ + + + + + + ++ V + Sbjct: 4 SLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVGLGV 63 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N L + Q + + + + + + G I Sbjct: 64 NVSGVDTIFTQGGLKSTGRPLDVAIQGNGFFVLKDPVTTRTYYSREGVFYLDKDGYLING 123 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + I ++ + + D Sbjct: 124 HGYRVQDVNGADIQ---------------------INNPEAVVTLTIQNDGQIKLVRSDG 162 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + TL +N ++ Q + Y Sbjct: 163 TTEFAGPIGLMSFKNPETLERIGQNVYSATIDTQTSFSSPVTPGQQGQGILVSGYLEMSN 222 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E + +I ++ Y + ++I +D+ML+ LL + Sbjct: 223 VDLASEFTEMIVTQRGYQANARVITTSDQMLEELLNIKR 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 28/179 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 ++ + + + + NI N + Y Sbjct: 1 MIRSLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + L + + F LK+ + Sbjct: 61 LGVNVSGV---DTIFTQGGLKSTGRPLDVAIQGNGFFVLKD-----PVTTRTYYSREGVF 112 Query: 108 RDSLESYSKNLSEDILGKT-----VIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + Y N + I+N E VV + +++ +R+D E I Sbjct: 113 YLDKDGYLINGHGYRVQDVNGADIQINNPEAVVTLTIQNDGQIKLVRSDGTTEFAGPIG 171 >gi|15616952|ref|NP_240165.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386813|sp|P57428|FLGK_BUCAI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|25403603|pir||C84970 flagellar hook-associated protein 1 [imported] - Buchnera sp. (strain APS) gi|10039017|dbj|BAB13051.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 543 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 39/334 (11%), Positives = 114/334 (34%), Gaps = 18/334 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54 + + N A + N + + I N + + + +N V V Sbjct: 1 MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57 Query: 55 QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ +Q ++ L++++ +N + ++ +E Sbjct: 58 IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 +++ + + +V ++++ + D + + + + E+ + Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174 Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 I+ K ++QRD L+ +++ +IGI I ++N + ++G ++ + Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + ++ S V+ +P + ALL+ R + +N++ Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 ++ S + I + G I + + Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQP 327 >gi|302343734|ref|YP_003808263.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301640347|gb|ADK85669.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 786 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 40/393 (10%), Positives = 99/393 (25%), Gaps = 21/393 (5%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 + D + + I+ + + + + T+ + +A Sbjct: 415 SVTGDDTTTLSELANMINAGNTATGTLQIDTTGMADDATITVGGVTFSYDGGGTATGANP 474 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 AD + + + ++ + + + D+ S + Sbjct: 475 WATLADLATAITANVPNVTATYTAGGTISLAY-DSVGVAGNAVTLAMDLNGGGGSIDLSG 533 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 ST+ + + T D + + V + ID Sbjct: 534 STLTNGWDGTTTGGAHEVTASALENADGTYSLQLTRNVAGAGSTYTIDVD---------- 583 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + + A + E + + + V + + Sbjct: 584 --------EFLSTNTLGSEAGVGFTTATQTTVARDETNGVLDLNGQVELDYYFEDAVQPQ 635 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + Q + S + ++ + + + K Sbjct: 636 TITIDYSPTASAASTQSAGSNETFYLYQDGSTRGTLQSLDIGTDGVITGTFSNGQLKTLG 695 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N W + +S + Q I V+L E Sbjct: 696 QVMLVDFANPEGLAREGDNL--WSQTTKSGEPIENTPGQGGTGSIESGALEQSNVDLATE 753 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I +++Y ++K I TD+MLQ L+ + Sbjct: 754 MVKMILYQRAYQANSKSISTTDQMLQELINLKR 786 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/447 (7%), Positives = 93/447 (20%), Gaps = 19/447 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55 M +L N Q +++ N+ N + Y TVV Q Sbjct: 1 MGMLTAMWAGVAGLNVHGQALSAVADNVANVNTHGYKASRVNFGDVMIHSLTVGGTVVNQ 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS----PTHYISKLRDSL 111 + + + ++ + + Sbjct: 61 VGTGAKVLSVQNLLTQGSFETTDVPTDMAINGGGFFQVNNTSAGQTAKYYTRAGQFLLDT 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E Y N L +D +++ +I I ++ L+ Sbjct: 121 EGYMVNPQGYRLQGYNVDANGDILAVPADL-----RITTVQTDAIATSAIDISMNLNSED 175 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + + +S + ++G T F V Sbjct: 176 TKKLHPSQLIDPSDQSTWNYVNTTRTYDSLGVGHNLSMFYQRLTTYNGTKANGATSFWKV 235 Query: 232 PRDINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + + + ++D V + G + + + Sbjct: 236 TAFESVDGVYHPNEDDYATTAEYLDAVNAKTYYMQFDTSGHLVGVSTGDSGYGDTYVYGG 295 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + + + I S ++ V + Sbjct: 296 KVSSSTSDIATALGGQLTFDGAGASDQVIRTSGTVTFAGTGTTSSTSVTVGADAAYTLTD 355 Query: 351 LRDGGSVSK----KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + + Y + + P ++ + E + Sbjct: 356 GLTPAQAAAELCDQINGASPAVNYYAVNEGSGVVTIHAKNANGPFDLSVSHDSSTEPDFS 415 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHIS 433 G S+ ++ + Sbjct: 416 VTGDDTTTLSELANMINAGNTATGTLQ 442 >gi|291286229|ref|YP_003503045.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290883389|gb|ADD67089.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 829 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 2/396 (0%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 A+ E + S T + D + S D LG + + Sbjct: 436 AVIEAVYGTTDTELSNTFLRTAQDDDPLTELFTSSGDSLGLDATAILQFSAGVAGENLAG 495 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 I A +L + + +D ++ + ++ + + Sbjct: 496 TATIPAATSTLDDLREAIAAYMGYDSATEDDVLQHIASLDKNSGKLQITGEKGSPNEIDF 555 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 + + D + T+ E + + + + + S + Sbjct: 556 VKFEVVGSGTYDTFYDYYEYNTVQEAKGGTLTTSQTIYDAQGNAHTVQYNFEMSDSLDNV 615 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + +I + Q + A + + S ++ Sbjct: 616 WKLTVSTPDDGAEISFNETTGNQVYMHFNANGSFNYLTTESGQRIASLSMNYDTGGGAGV 675 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D ++ G + + + L ++I +Y + Sbjct: 676 VSDIEMDLGTAGKFDGIYISSDDSGITKAAQDGYATGLLESTLFNSNGEIIGYYTNGQVA 735 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 A L + + + + S + ++ V+L Sbjct: 736 TIAQIATATFTNPGGLTKVGD--TTFQKSSNSGDPAIGRPGTGFRGKVAAETLENSNVDL 793 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E +I ++ + ++++I +D+MLQ L+ + Sbjct: 794 STEFVNMITTQRGFQANSRVITTSDEMLQELMSLKR 829 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 32/416 (7%), Positives = 94/416 (22%), Gaps = 15/416 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + Q + NI N + Y + V + + Sbjct: 1 MMRSLYSAISGLSVNQQAMDVLGNNISNVNTVGYKSGRAVFEDMLSQTLVGSTAPSDTLG 60 Query: 63 FDKVLHA-------------HSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKL 107 + ++ + + +S Sbjct: 61 GTNSTQVGLGTSLAGVDTIFETGSMQSTSVNTDLAIQGDGFFVIKGAGSSDLLYTRAGDF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 R S + ++D + T+ V + ++L L Sbjct: 121 RFDTSGSLVTSSGFYVQGWMVDPDTGELLTEGTTEDIVLSSAYQTAQAKVTSEASLAGVL 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + D D + Q ++ +I + + Sbjct: 181 DTDADPSIVSYPSLLHYADTGDSIFQVYSDDGANMDLADNESIKVKAHGTGMTEMGYIYN 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 V D+ + + S + + + + + ++ D V + Sbjct: 241 TSDVNLDLASDPQLLVYINSNPVTLEYGVDFNTMAELANALETQLNTAAGAADFSVAVVD 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ ++G+ D +G+ + + D + Sbjct: 301 GTINVTRNTVVGANVSIDSFSGSPLLAVAMSDLASVYDDAGDTKSSDEMYYESQIYAGRD 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + L + S ++ + ++ I + + + L + Sbjct: 361 FTTLTELASAIEEAIDGNVIPTDEFNVTYDSATGQFNYVIDNTLNSALGTLRLSGF 416 >gi|117928057|ref|YP_872608.1| hypothetical protein Acel_0849 [Acidothermus cellulolyticus 11B] gi|117648520|gb|ABK52622.1| protein of unknown function DUF1078 domain protein [Acidothermus cellulolyticus 11B] Length = 398 Score = 90.9 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 72/245 (29%), Gaps = 5/245 (2%) Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ T + + + DG + V K +A + N Sbjct: 159 TSMPPSATTTATLAGNLPADGSGSPIDNNLTVYDAKGQATQYTLEYSYDTTSNSWKLDIL 218 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G P++ +S L + IS + Y + Sbjct: 219 PPGGGSPTNVPLSFDSTTGQYNGTNPQTVTLGGQN---ISLDLSGLTAYGGGNTVEVVSS 275 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 S ++ + + + + +A N L + + + E Sbjct: 276 DGSAMGSLASYTISPDGTIQGVFTNGMKQPLAKIALATFNNPGGLTKVGTS--EYAESVN 333 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + ++ V+L +E + LI E+ + + K+I +D++LQ L Sbjct: 334 SGAAQIGASGTGSRGQLAAGELEGSNVDLSQEFTNLIIAERGFQANAKVITTSDQVLQDL 393 Query: 476 LEGVK 480 + + Sbjct: 394 VNLKQ 398 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/369 (7%), Positives = 68/369 (18%), Gaps = 15/369 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 +L + + NI N + + + P+ V Sbjct: 1 MLRSLFSGVSGLRAHQTMLDVVGNNIANVNTVGFKASQVEFEDTLSQMLRAAGAPQGVQG 60 Query: 53 VT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T Q + + + D Sbjct: 61 GTNPAQVGLGVQIAAISTTFTQGPAETTGVDTDLMIQGDGFFVLDDGGQRVYTRNGAFSF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + L + + + V +A ++ + Sbjct: 121 DANGNLVSANG-ALVQGWLASGGVVNTTGPVTAIKLPLGTSMPPSATTTATLAGNLPADG 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 D +K A + + S + I + V + D TT Sbjct: 180 SGSPIDNNLTVYDAKGQATQYTLEYSYDTTSNSWKLDILPPGGGSPTNVPLSFDSTTGQY 239 Query: 230 TVPRDINFEKMN-SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++ + G V G + + D + Sbjct: 240 NGTNPQTVTLGGQNISLDLSGLTAYGGGNTVEVVSSDGSAMGSLASYTISPDGTIQGVFT 299 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + I + +P + S + + Sbjct: 300 NGMKQPLAKIALATFNNPGGLTKVGTSEYAESVNSGAAQIGASGTGSRGQLAAGELEGSN 359 Query: 349 SFLRDGGSV 357 L + Sbjct: 360 VDLSQEFTN 368 >gi|329898289|ref|ZP_08272372.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] gi|328920854|gb|EGG28297.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] Length = 975 Score = 90.9 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 56/418 (13%), Positives = 120/418 (28%), Gaps = 4/418 (0%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 FD + S G + L N DS S ++N + Sbjct: 559 YFDGKFNISSGTTGDASSIAVRNILTASDGVTKSANELGLQLFGLEYDSALSDAENTIKV 618 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + I N V +T A + D ++ R L+ + A Sbjct: 619 DPETSAIANRPAVRGTASTPAIVIGNQM-GVDPNAPFSVTADNRNLTVIVDNISAQIELD 677 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + DF D + + +++ +G V+ + D+ V G T + + Sbjct: 678 LGDYQIGDFTDMVEEKINLMADNVGRQVSGVKVDFDLGVIRFTGATATDDSFLQVAGSAD 737 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + + + + A + Q+ + Sbjct: 738 FGLEDVDSAFGQTSTYIELDPDTQGASTPLYVFQDRNGTWIETTDKQDFDENDIPQWRPI 797 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 F +K + N+ + I+ + Q+ S + L + + + Sbjct: 798 FLDKGELTFNTSGTLVSPVNRVTLASSEITGNQINLDYAASTQFNSPFAVLSQSQNGAPE 857 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N+ ++ Y + K+ +A T L + + G++ + S Sbjct: 858 GDLVGVNIGEDGLVVASYSNGSQKSLGKIILANFATPKGLRQVGNS--GFVASSESGEAR 915 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F I + V+L EL LI ++++ + K I + + T++ Sbjct: 916 QGEPGSAGFGTIRAGATERSNVDLTAELVNLITAQRNFQANAKAIETSSTLTSTIINM 973 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 21/239 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F + N A+ + + NI N+ + R V Sbjct: 2 SFYTSLTGLNAATTELSVTSNNIANSATAGFKRSSASFGDIFATSPLQRASAVVGQGVAL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + S+++ F L+ + + ++ Sbjct: 62 KEISQEFSQGFVQFSSNSLDLAITGDGFFPLQ------SSDGSRVYTRNGSFMLNEQNQM 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSA-----REVQKIRADADKEIELEISNLRRFLSEL 170 N + L +D+ + + SA + V + RA + E+ L + + ++ Sbjct: 116 VNSAGQALLSLPVDSTNKADFSQPPSALSIPRQTVSEFRATTEVELGLNLPSNAEPITAN 175 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N + + + + + + + N DG + Sbjct: 176 FNPNKPETYHRTTSLTVYGASGSQHLATIYYVKTQNATADTPENKWQTHVYLDGQRVDS 234 >gi|209521589|ref|ZP_03270287.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] gi|209497972|gb|EDZ98129.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] Length = 502 Score = 90.9 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 50/489 (10%), Positives = 108/489 (22%), Gaps = 34/489 (6%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70 I NI NA+ + N + + Sbjct: 17 LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTQLSEVQQQFSQGTITTT 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD-----SLESYSKNLSEDILGK 125 + A+ F + + N + L Y+ N S I Sbjct: 77 NQALNVAINGNGFFQMSNNGTLTYSRNGVFQLDKNGFITNAEGLDLMGYAANSSGIINTA 136 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + ++ + + + + + + T + Sbjct: 137 QTVPLTVPTANIAPQATTKITA-GLNLNAQDNIMLGTPTVTAGATNTGSLTTTGATITNA 195 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A D+ + + T + + TL + + + Sbjct: 196 AAGTNTDKYTINFTSATAYTVTDTTLGTSTSGTYTAGTAITLGNGESITFSGTPASGDSY 255 Query: 246 TSESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T NP + S + + Sbjct: 256 TVTQNPTTFNQNSSSTYNYSTSTTAYDSLGGSQTVNMYFAKTGSGTWDVYAGTSTGTATL 315 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + G+ +G + + G F + Q I+ + QY Sbjct: 316 VGTANFNSSGTLVSTTNASGVATSTLGAFSLSIPTTDGSGTPQNITLNMASTTQYGGKDG 375 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + L +Y + +A + L++ N G Sbjct: 376 VNSLSTNGYAAGTLTSFTVGSDGTLTGNYSNGQTAALGQIVLANFSNQNGLVDLGNNEYG 435 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + + V+L EL LI +++Y + + I Sbjct: 436 Q--TAASGVAQISTPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQ 493 Query: 470 KMLQTLLEG 478 + QTL+ Sbjct: 494 AVDQTLINL 502 >gi|238028849|ref|YP_002913080.1| flagellar hook protein FlgE [Burkholderia glumae BGR1] gi|237878043|gb|ACR30376.1| Hypothetical protein bglu_1g33140 [Burkholderia glumae BGR1] Length = 412 Score = 90.5 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 94/472 (19%), Gaps = 68/472 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66 + AS I NI NA+ + + N + Sbjct: 6 GLSGLQGASSDLDVIGNNIANANTVGFKAASAQFSDLYANSVSGAVANGIGIGTQLATVA 65 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + S + + + + N + L Sbjct: 66 QVFQQGGFATSQNPLSMAISGNGFFQVNSNGVTTYTRDGQFSPNASGNITNSAGGQLMGY 125 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++ + + + L + + T Sbjct: 126 GVNADGSI----------------NTSAIVPLTAPQGNIPPKATSSITGQFNLSTTDTAQ 169 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + + D + + + + N + +Y TT+ Sbjct: 170 TNSPFNFSDSSTYTLKQPVQAYDSLGNAKTVNLYFVKSTTVGSWEVY------------- 216 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + S GK+ L + Sbjct: 217 ----AGADNTAPTDLGTASFDSSGKLTGLTA----KSATASGNKFTFSIANTTGAVTPQS 268 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + Sbjct: 269 VSLDLTGSTQFGATK--------------------------SGVSNLVADGFASGALQNY 302 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++A + Y + + V N L N +++ S + + Sbjct: 303 SVAADGTITGSYSNGQSMKLGQVFVVNFNDPQGLTSIGGNQ--YIQTAASGVPQIGVPGS 360 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I S + V+L EL LI +++Y + + I + QTLL Sbjct: 361 TNHGTIKGSTTENSTVDLTGELVNLITAQRNYQANAQTIKTQQTVDQTLLNL 412 >gi|225628428|ref|ZP_03786462.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] gi|225616274|gb|EEH13322.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] Length = 456 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 39/425 (9%), Positives = 106/425 (24%), Gaps = 8/425 (1%) Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + K S G Q M + + + + Sbjct: 36 DGLIFKRFRTRSCFAGNTLTCQELPMSLYGMMRTGVSGMNAQANRLSTVADNIANASTVG 95 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 S + +R + + ++ L+ ++ Sbjct: 96 YKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQG 155 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PRDI 235 S + D ++ + T G + P + Sbjct: 156 PGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEG 215 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + S G ++ S KG+ L + Sbjct: 216 STAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNVSVKN 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + + + + +L Q ++ + + Q + + + Sbjct: 274 AADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVI 333 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + K P+A + + + + N +L Sbjct: 334 NGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FLPSAE 391 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S L I ++ +EL+ +I+ ++SY ++K+ +++ L Sbjct: 392 SGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVL 451 Query: 476 LEGVK 480 + + Sbjct: 452 VNLKR 456 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 61 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 120 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 121 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 180 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 181 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 240 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 241 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 300 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 301 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 360 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 361 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 420 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 421 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 453 >gi|254439743|ref|ZP_05053237.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255189|gb|EDY79503.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 1412 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 52/428 (12%), Positives = 118/428 (27%), Gaps = 9/428 (2%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + S + L E L + + NS T +++ S+ Sbjct: 986 RDTGAFTFESGTTGKSVRANKALGVEVEQLASNIQVGRYEINSLTGLAEIGDGTIDLASR 1045 Query: 117 NLSEDILGKTVIDNAEEV-----VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 L+E + + + A+ + D + ++ R + Sbjct: 1046 VLAEGGSHVMGVGLGRNIGFLEGTGLKSQPAQAIGNPAKDPLNSQPIFLNASNRETTFNV 1105 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 VN + ++L Q+I+++ T V Y T Sbjct: 1106 SVNGVNSLIEIPGGNYIG-STLAELLEQRINQMRDPDTGRTIGGVTVKYQPTENNFVFTT 1164 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + GV + V + I +++ + Sbjct: 1165 GTTGDTSTIRVQGPAKLGLDDVPLGVGSVPTIANLVQATNENGTPLFVNEDGDIVESEPN 1224 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN-KLCQGISETICVNPQYRSNPSF 350 + + ++ + + D + + + Q + S Sbjct: 1225 NLVTDYFPLYLDEGELTFDKTGRLISPQGLTRYDSQSETFSISLDIDYSASSQLATPFSV 1284 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + N+ L +Y + NK +A N L + + Sbjct: 1285 NNLDQNGFTSGRLDGLNIDSNGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNA--TF 1342 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 +E S + F I V++ EEL LI ++++ S+K I + + Sbjct: 1343 VETASSGEPIIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIETSTQ 1402 Query: 471 MLQTLLEG 478 + QT++ Sbjct: 1403 LTQTIINI 1410 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 41/378 (10%), Positives = 85/378 (22%), Gaps = 21/378 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 F A N A A+ NI N + + + Sbjct: 2 SFYTALTGLNGAQADIAASSNNIANVGTTGFKLSRAEFGDIFATSPLQNSTSSIGSGAIL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + A +A+ Q F ALK +++ Sbjct: 62 KGVKQQFTQGNISASLNALDMAISGQGFFALKPSLTSTQV----VYTRNGSFNVDNNRNV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S L ++ V SA ++ D + ++ + VV + Sbjct: 118 VDSSGQFLLTYPVNEDGSVTAKDIDSAVPLRLPVTSGDPQGTTKVDLAVNVPANADVVTE 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 KF D D S I + N VY P + Sbjct: 178 NQKFVDG------YVFDPNDSESFTNSTSFTIFDDLGNPTIATVYFIKTQRANAADPTNK 231 Query: 236 NFEKMNSYTVTSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ N + + + ++ +LD++ Sbjct: 232 FETRLVINDEVVPPNLVPAVVDDGRQIFIDQFGNQTTDVPDPSYFNTGRSSPLYKLDDLR 291 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + A + I + Y N L + Sbjct: 292 TRVPSQPAALTGEASGFDFGDEGTREIEIVNDPMLFGATYEADSSNQGVYWGNDFLLVNI 351 Query: 355 GSVSKKFLWNVKNLAGYP 372 ++ +++ Sbjct: 352 DDGTRPVSIDIRAGRYNA 369 >gi|317051681|ref|YP_004112797.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316946765|gb|ADU66241.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 1341 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 2/145 (1%) Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 QY S + + K+ ++ + + + ++ +A Sbjct: 1199 GGFDGFTQYASKSDTTKQRQNGYKEGTLEDYSIDENGIVYGLFSNDLSRPLAQLTLADFT 1258 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L + + ++ N S + F I + V+L E + +I VE Sbjct: 1259 NPQGLSKVGNSL--FVSTNASGQPNYAAPGSAGFGTIISNSLEMSNVDLSMEFTQMIIVE 1316 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++++I +D M+Q +L + Sbjct: 1317 RGFQANSRIISTSDSMIQEVLNMKR 1341 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 21/257 (8%), Positives = 56/257 (21%), Gaps = 7/257 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQR 56 +L + N + I NI N + Y + V + Sbjct: 1 MLQSMYAGVSGLVNHQRSMDIIGNNISNVNTFGYKKARAGFADVMSISIGGSGVNPMQV- 59 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L I + + + E Sbjct: 60 GIGTRVNSTNLIFSQGGIEASNKSTDMAIAGRGFFVVSNGAQNFFTRNGNFTFNKEGMMV 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 ++ + + N + K SN+ + + Sbjct: 120 TPDGLVMQGRMATQNQYGEFTINPTTVVGNIQIPVGIKSPASPTSNVELGGNLNAEASGT 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I + A D + ++ + + + + L+++ ++ Sbjct: 180 ILSTPVLRTAADGNKDLSTLFNEQGNALSILDDQAVTFKSHATALTSMGQLYDSADTGLS 239 Query: 237 FEKMNSYTVTSESNPIF 253 ++ VT + + Sbjct: 240 IVDNETFKVTITKDGVQ 256 >gi|255605408|ref|XP_002538389.1| Flagellar hook-associated protein, putative [Ricinus communis] gi|223512404|gb|EEF23994.1| Flagellar hook-associated protein, putative [Ricinus communis] Length = 283 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 104/284 (36%), Positives = 163/284 (57%), Gaps = 4/284 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--ISPENVTVVTQRSE 58 M+L N A+ N S A + NI NA + +Y RR +TT +TV +R+E Sbjct: 1 MALSTTLNTAKATLGNTSLSSAVVSNNISNASSSDYNRRAAVTTVNTLTGAITVKIERAE 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + L A S G+Q+ L ++L +M +++ P+ Y++ L+++L +Y+ + Sbjct: 61 DSALLKQYLSAASDDAGKQKFLAGMKSLSVVMGGEEYTAA-PSTYLASLQNALNTYAASP 119 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++ L V+ A + NTS + VQ++R DAD EI+ I+ L + L + ND +K Sbjct: 120 TDITLASAVVSAATDTTNALNTSTKAVQQLRVDADSEIDSTITRLNQLLKDFGDANDQVK 179 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + T D ++ LD+R+ LL++IS IIGIST R ND+ +YT+DGTTLFET PR I+FE Sbjct: 180 YATQVGRDPNNALDKREGLLKEISGIIGISTATRPGNDVAIYTTDGTTLFETTPRKISFE 239 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDS 281 +Y + + IFIDGV+V + GS KG + ALLQ+RD Sbjct: 240 SRAAYDADTTGSGIFIDGVMVKTGSGSNTTAKGSLPALLQLRDE 283 >gi|223038348|ref|ZP_03608642.1| flagellar hook protein FlgE [Campylobacter rectus RM3267] gi|222880205|gb|EEF15292.1| flagellar hook protein FlgE [Campylobacter rectus RM3267] Length = 784 Score = 90.1 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 42/429 (9%), Positives = 103/429 (24%), Gaps = 10/429 (2%) Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK---LRDSLESY 114 + + I + + + + ++ + + + L + Sbjct: 359 IGNDFKTTNIITAYQYIYNKTQVNATHTYNDAVAREVTTTEDLREAMQRDARLWTNYTGT 418 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + N EV + + T Sbjct: 419 VVGNTPGPNTTPDPAAFAAALANNKNDGVEVTVNEHGQFQVKNPSGDAFNSDDGDDTDDT 478 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + +A ++ + +S + + G+ R Sbjct: 479 TGNIPPGTANTNADANDHNMNLTVTGLSNAAN-NVTENVKFTASMAPLSGSLSSGNATRV 537 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + M +++ +++ + + + V + D Sbjct: 538 TDSLNMAAHSSSTDLFDSLGTKHNIKIDFVKRGYTPNGGTEWTMVIQVAEPNRINPDGEP 597 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----ISETICVNPQYRSNPSF 350 +I + +P + P + + ++ S Sbjct: 598 ANVITGYVRFNPDGSLATYSPASITFGAQNGSAGGQHIELKLGTTAQMDGLASTDNDSST 657 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 N + L+ + + + VA + N L N Sbjct: 658 ADISQDGYASGELNGIRIDQSGTLVGSFTNGRSLGLAQVGVAKFSNNEGLSSEGGNLFSR 717 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S + IS S V+L L+ LI V++ + ++K I +D+ Sbjct: 718 --TANSGDPVIGAAQTAGRGKISSSSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDE 775 Query: 471 MLQTLLEGV 479 ML TLL+ Sbjct: 776 MLNTLLQLK 784 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/214 (7%), Positives = 32/214 (14%), Gaps = 31/214 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ NI N + + Sbjct: 1 MMRSLWAGVTGLQAHQIAMDVEGNNIANVNTVGFKYSRANFDDLIYQTSRIATGPQNRHG 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + L F M + D + Sbjct: 61 GVNSMQVGLGVQTNSTTRI---FKQGSLQTTDKQTDIALQGDGFF-----MVSPDGGKTT 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + +I+ + D + Sbjct: 113 YYTRNGDFSRDSVGNFVDNGGNIVQGWMRDEVTGEIDPTRPIGDIKIPSGLTVPARATTN 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 I+ S V N I +H ++ Sbjct: 173 IALKGNLDSGNDVGNKKIPIYQLDQHHNWTDTNK 206 >gi|330447903|ref|ZP_08311551.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492094|dbj|GAA06048.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 398 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 115/474 (24%), Gaps = 77/474 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + + + Q +I NI N V+ + Sbjct: 2 SFDIALSGLDATNVQLNTISNNIAN-------------------VSTSGFKESRTEFSAV 42 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + Q+F+ + ++ + + + + Sbjct: 43 YNGMQAGGVEVAAISQNFDKTGSI------TGTGRPLDLAISGSGFFVTKDHTGQTLYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + +++ + + ++Q DA L V N I + Sbjct: 97 SGVFGSDKDNNIVSNNGAKLQGYTVDA-----------NNNLQAGAVGNLKITTASLPAK 145 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + ++ + I+ N+ D + + Sbjct: 146 ATDELAFVANLDARSSVIDPAINPFDPNSTDSFNSSYTSKVYDSLGNPHTVTQYFTKTNA 205 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + +DG S + Sbjct: 206 NEWQVNVVVDGAATPSQTQNV--------------------------------------- 226 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + I+ I Q+ ++ + + Sbjct: 227 AFNTDGTLQLPTAPFAVNFNPAGADAANINIDIAGTTQFGADFGVSTNAPNGYTSGELAG 286 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + ++ +A L++ N W++ S + S Sbjct: 287 VRVEDNGMVFATYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 344 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+L EL L+ +++Y + K I +DK+ Q+L V Sbjct: 345 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398 >gi|86747891|ref|YP_484387.1| flagellar hook protein FlgE [Rhodopseudomonas palustris HaA2] gi|86570919|gb|ABD05476.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 421 Score = 90.1 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 59/487 (12%), Positives = 119/487 (24%), Gaps = 74/487 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-------- 52 MSL + A + N S A I NI N+ Y N + Sbjct: 1 MSLSGALSSAISALNAQSSALAMISDNIANSSTVGYKTSSASFESLVTNTSGASSYSSGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT + + +L + ++A F + ++ ++ + Sbjct: 61 VTASATSNITTQGLLTSTTTATNIAIQGNGFFPVTTSLTG----GSTLYTRNGAFTIDSD 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y N + R D D + S + +V Sbjct: 117 GYLVNNG-----------------------AYLLGWRTDTDGNVIGTASEGNLVPIDTSV 153 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + T + A+ D + + + TS + T Sbjct: 154 AKTSSGATTTTSFAANLPADAA----------VNDTFTTSMPLYDSLGTSSTMQVTWTKT 203 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + + S G + + Sbjct: 204 AENTWSASFGKPTLASDSTTTLAAAPTDTISVSFNSDGSLASTSP--------------- 248 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + G KD +L +S S+ Sbjct: 249 ---SPATVTISDWTTGAANSTITLDLGTVGGKDGLTQLSSDLSTPAVTIDSIESD----- 300 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + + Y + PVA + L + Sbjct: 301 ----GLAFGKLSSVAVGDDGTVNATYSNGETIAIYKIPVATFTASAELEAQSGGLYAT-- 354 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S S L I S + + E+ S +I +Q+Y+ ++++I +KM Sbjct: 355 TAASGSATLQESGANGAGTIYGSELESSTTDTNEQFSSMISAQQAYSAASQVITAVNKMF 414 Query: 473 QTLLEGV 479 TL+ + Sbjct: 415 DTLIAAI 421 >gi|242238969|ref|YP_002987150.1| flagellar hook protein FlgE [Dickeya dadantii Ech703] gi|242131026|gb|ACS85328.1| flagellar basal body FlaE domain protein [Dickeya dadantii Ech703] Length = 399 Score = 89.7 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 76/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F++A + N AS I NI N++ + + V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSETTGFKSASVSFADIYADSAVG------------ 49 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L ++ + + + ++ + + + + Sbjct: 50 -------------LGVKVASVTQNFTDGTVESTDVGTDVAISKTGFFRVTDDSGSVYYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + V A S + + + + Sbjct: 97 NGEFTLDSDRNLVTKTGYYVTGYAATGTPPSIASGSQPTVLNISSSGMAASATSTASFSA 156 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D I+T + + T ++++ + T Sbjct: 157 NLDSGEDA-------------ITTTFDATDSSTYNWTQSLTTYDSLGNVHTVNLYFTKTA 203 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + +D S+ Sbjct: 204 DNTWEVHALDSSDSSATA------------------------------------QDLGAI 227 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + L+ S Q S+ S Sbjct: 228 SFSTSGQITGTTSFNISTNSLNGSAANTFSIDFTGTTQQNSDSSVNTKSQDGYTAGSLTS 287 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y +S + +A + L N W E + S L Sbjct: 288 YTINDDGTITGTYSNSQTQLLGQIVLASFSNPQGLSSQGDNV--WSETSASGQALLGTAG 345 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VF ++ + V++ +EL +I +++Y + + I D +L TL+ Sbjct: 346 TGVFGTLTSGALESSNVDISQELVNMIVAQRNYQSNAQTIKTQDAILNTLVNL 398 >gi|289433975|ref|YP_003463847.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170219|emb|CBH26759.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634374|gb|EFS00969.1| flagellar hook protein FlgE [Listeria seeligeri FSL N1-067] gi|313639059|gb|EFS04046.1| flagellar hook protein FlgE [Listeria seeligeri FSL S4-171] Length = 411 Score = 89.7 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 41/478 (8%), Positives = 105/478 (21%), Gaps = 67/478 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGG---- 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A+ +A + + N +I Sbjct: 57 -----LYAGTNPMSFGSGAKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNI 111 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + A T + A L + + + + + Sbjct: 112 VYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLSGNLQPIQIPLNSAIPGEATKTGS 171 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++D + ++S + + + V G Sbjct: 172 LSGNIPLDWGEKDTINSELS----VYDNAGGKHKLQVNMKAG------------------ 209 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + N + + + + + G + Q + +N Sbjct: 210 -TPDANGNVSYDYEIQMDGKELTPPVTGTLNYNAQGELTNAAALRNIQINTTVNGKQIDM 268 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + +F + S+ + + F Sbjct: 269 DLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAITDSGYIAVSYSDGTVIPVAQLAVATFS 328 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + S + + G Sbjct: 329 NEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAGG-------------------------- 362 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS S V+L E L+ + + + K+I D +++ ++ ++ Sbjct: 363 ---------ISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411 >gi|297521522|ref|ZP_06939908.1| flagellar hook-associated protein FlgK [Escherichia coli OP50] Length = 306 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 7/269 (2%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 R+ + + G K F G Sbjct: 44 TFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD 103 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 I A + +V+ + + + + + + Sbjct: 104 VAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGT 163 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 S T+ N L + + + + Sbjct: 164 PAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN-------RNGQALLDLQS 216 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + + + + + + + V +S + GVNL EE Sbjct: 217 NSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYG 276 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L + +Q Y + +++ + + L+ Sbjct: 277 NLQRFQQYYLANAQVLQTANAIFDALINI 305 >gi|84514833|ref|ZP_01002196.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] gi|84510992|gb|EAQ07446.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] Length = 1778 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 6/320 (1%) Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHD--FLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + R + VN + ++ + ++ + + TI Sbjct: 1461 NPANRETTFNISVNGINAVIDIPGGNYIGSTLAERLQERINQMQDPVTGRTIGGVTVRYQ 1520 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ T + + + P+ I V +N A + + + Sbjct: 1521 PDDNNFVFTTGTTGTESTIRVRGPAKLGLDDVPLGIGSVPTIANLVQATNENGVPLFVNE 1580 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 +V N L E L + E P + + Sbjct: 1581 NGEIVDSEPNNLVEGYYPLYLNEGELTFDKTGRLISPQGLT--RYEAQTETFSISLDIDY 1638 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + Q + + + ++ L +Y + NK +A N Sbjct: 1639 SASSQLATPFVVNNLEQNGFTSGRLDGLSIDATGLLRANYTNGQNKPLGKIVMANFNNQN 1698 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + +++ S + F I V++ EEL LI ++++ Sbjct: 1699 GLKQVGNA--TFVQTAESGDPIIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNF 1756 Query: 459 NISNKLIMFTDKMLQTLLEG 478 ++K I + ++ QT++ Sbjct: 1757 QAASKAIETSTQLTQTIINI 1776 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 38/365 (10%), Positives = 73/365 (20%), Gaps = 23/365 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55 F A N A ++ NI N + R + Sbjct: 2 SFYTALTGLNGAQSDISATSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + +A+ Q F ALK Sbjct: 62 KGVKQQFTQGNIASSLNALDMAISGQGFFALK----PSQTSTQVVYTRNGSFNVDNNRNV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S L ++ V SA ++ D + + + VV + Sbjct: 118 VDSSGQFLLAYPVNEDGSVTAKDIDSAAPLRLPVTSGDPKATSLVDLAVNVPASADVVTE 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP--- 232 KF D D S I + N VY P Sbjct: 178 KEKFTDG------YTFDPNDSESFTNSTSFTIFDDLGNPTIATVYFIKTQRATAEDPTNK 231 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + N + + ++ A + P+++ Sbjct: 232 FETRLVINNQVVPPDLVPAVTRSNEQIFIDRFGNQTTSVPDASYTLEQKSSPLYKLDEQN 291 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + N + I L + + + + Sbjct: 292 DRAPSQPAILTGQASGFNFGDEGTGEIEIVTDPLQFGATYEANPNSNQGVYWGRDFLLVN 351 Query: 353 DGGSV 357 Sbjct: 352 IDDGT 356 >gi|296445196|ref|ZP_06887156.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] gi|296257370|gb|EFH04437.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] Length = 413 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 53/480 (11%), Positives = 109/480 (22%), Gaps = 68/480 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M+ A+FN + + ++ +NI N+ Y T + +V + + Sbjct: 1 MTATALFNTSVMGMAAQASALGAVSQNIANSGTVGYKDATTQFSTVLSSVQNGSDPAGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119 V Q D N+ E N + Sbjct: 61 TAQTGVAVTAQGNTQQTSSTTDLAIQGSGFFVVSDSSGNTLLTRAGSFEPDSEGRLVNKA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+A +Q + I + + + Sbjct: 121 GYYLMGYSADDANSPSDI-----AGLQTVHVAIGSLIATPSTEGSLTANLQQGADVVDSS 175 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S +DA + T ++ + + Sbjct: 176 ALPSTNDASA----------------------------TYTSKTSVTAYDNYGNSVKLDV 207 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S T +E D S+ G + + V G Sbjct: 208 YFSKTADNEWEMAVYDSSKADSSSGGFPYSEGPLTTQSLSFDSNGALTSGSPTTIDVPNG 267 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D S+P+ + Sbjct: 268 QTLTLDLSGMTQLGSSFS---------------------------VSDPTINGNAAQAVA 300 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + L P+A +++ L + N+ S + Sbjct: 301 SVNVDSDG-----TLNYVLTGGQTVPAYKIPLANVSSPSGLQSVSGNAFAT--NASSGTA 353 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + F I + V+L +LS +I ++SY ++++ +++Q L Sbjct: 354 YVGLPGTGSFGDIQSKSLESSTVDLATQLSNMIVAQRSYTANSQVFQVASEVMQVLNNLK 413 >gi|115522802|ref|YP_779713.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115516749|gb|ABJ04733.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 421 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/484 (10%), Positives = 109/484 (22%), Gaps = 67/484 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A + N+ SQ A I NI N+ Y + + + + S Sbjct: 1 MSLTGALSSAISALNSQSQSLAMISDNIANSQTVGYKTTSALFDSLVTSSSSASSYSSGG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRDSLESYSK 116 + S + + + ++ Y Sbjct: 61 VTVLSKSNISSQGLLTTTTSSTDIGISGNGFFPVSTALNGGSTLYTRAGSFTIDDSGYMV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L D VV + N A Sbjct: 121 NASGAYLLGWRTDADGNVVGGTGSGD-------------------------LVPIDTNIA 155 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 +A+ D + + L++++ + Sbjct: 156 ATSGSATTETTVALNLPADAAVND-------------------TFTSSMPLYDSLGTANS 196 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + T + + + S + + + D + + Sbjct: 197 MQITWEKTADNTWTASVANPTLTSDSTKTTGTASGTITITFNSDGSLKSTSS-------- 248 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 P A + I + T + Sbjct: 249 ---------PTAFSVSGWTTGAANSTITLDLGTIGGIDGLTQKSSGSTTPAIDLTSIESD 299 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 S + + + Y + + PVA L + S Sbjct: 300 GSAYGKLSSVAVGDDGKVNATYSNGTTISLYKIPVATFAAPDQLQVKSNGLYA--ATADS 357 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + I + E S +I +Q+Y+ ++++I ++M TL+ Sbjct: 358 GTAIVQQSGSNGAGTIQGGKLEASTADTNTEFSNMISAQQAYSAASQVITAVNEMFDTLI 417 Query: 477 EGVK 480 V+ Sbjct: 418 SAVR 421 >gi|83647173|ref|YP_435608.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] gi|83635216|gb|ABC31183.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] Length = 651 Score = 89.7 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 47/454 (10%), Positives = 115/454 (25%), Gaps = 12/454 (2%) Query: 35 NYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94 Y + T + + + VT + + L + I ++ +A Sbjct: 199 GYAAQTITVTQADGSTSTVTIPANSSANEIAALFNNVDNIDAAASTRATITAAGFNNASG 258 Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE-----VVQNFNTSAREVQKIR 149 + +L ++ V + + N + Sbjct: 259 TMQVFINGVLFDGYTNLTDLGDAINSSSSLIGVRAVLDGTDLVVIDNRGNDLSFSFNGAA 318 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 D + + + LS + D L + ++ Sbjct: 319 GDQFLVQGDDAAATSQTLSTALTDVVVGGGVNLTIQDGVTVASGTTDLFATFTGTPFVNN 378 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + ++ + TT+++++ + + P + + + Sbjct: 379 VFDPADENTYNHATSTTIYDSLGNSHVLTTFFVKEPQTATTPDNLWTMYALIDGQDIGDP 438 Query: 270 GKIKALLQIRDSVVPIFQNQ-----LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + Q+ L + + + D +E + + Sbjct: 439 LVTGGTPTRASYSLVFDQDGSINEVLSDDVLISNWTPLAPDGTPNGAEGPLNVADGGTLP 498 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + QY S + + ++ + Y + +K Sbjct: 499 IPDPPTSSNFFVDLGTTTQYGSAFAVNDLQQNGFTTGRLIGLDVDDGGVIFARYTNGESK 558 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A N L W+E S + + I S V+L Sbjct: 559 VLGQVALANFNDIQGLAPVGE--TTWVETFNSGNPVIGSPGTASLGAIRSSSLEDSNVDL 616 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E+L LI +++Y + K I + + QT++ Sbjct: 617 SEQLVGLIIAQRNYQANAKTIETANAITQTIINL 650 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 44/401 (10%), Positives = 96/401 (23%), Gaps = 24/401 (5%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQR 56 FN A AS NI NA + R N V + Sbjct: 3 FNIALTGIRAASVDLEVTGNNIANASTTGFKRSRAEFGDLYANSFLSLGTNPVGDGVRVQ 62 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L + + + F L D + + E Sbjct: 63 KVRQEFAQGNLSFTENGLDLAINGEGFFIL------DTNNGDRRYSRAGAFGIDKEGNVV 116 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L V +++ V + + D ++ ++ L + Sbjct: 117 NSSGMHLQGFVANDSGVVSGVLGDLVIDDTSLAPDRTTRVDANLNLDASEPVLLERGDSL 176 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + ++ I ++ + + T+ + Sbjct: 177 TSDGLLIGQAVDATAAGTNGANGYAAQTITVTQADGS--------TSTVTIPANSSANEI 228 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 N+ + N S + I +L + + + ++ + + Sbjct: 229 AALFNNVDNIDAAASTRATITAAGFNNASGTMQVFINGVLFDGYTNLTDLGDAINSSSSL 288 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + +N ++ + + + + + GG Sbjct: 289 IGVRAVLDGTDLVVIDNRGNDLSFSFNGAAGDQFLVQGDDAAATSQTLSTALTDVVVGGG 348 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 V+ V +G DL + + N +FDP N Sbjct: 349 VNLTIQDGVTVASGTTDLFATFTGTPFVNNVFDPADENTYN 389 >gi|157364671|ref|YP_001471438.1| hypothetical protein Tlet_1820 [Thermotoga lettingae TMO] gi|157315275|gb|ABV34374.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 631 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 34/427 (7%), Positives = 92/427 (21%), Gaps = 13/427 (3%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + + + + + + + + D+ + L Sbjct: 217 VRQTDPFSTKQSYTWTAYDENNAVVSVGYIVMNQYGNVDEAGVYQNLSATATTDGQLTQA 276 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + G + + A + + N + T + Sbjct: 277 DVSGTIPADGDYHAVVLDSNGNVIFSDAVTISGGNFTISDSDIVNGQNYTVIFYDETTAS 336 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 D T + + R S +S V + Sbjct: 337 DEFTVATGANISIPTAGEARFYESDNPSNYNVLSYESPKYVTAVQMYDSLGNAYSVYVEF 396 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + G ++ + D ++ Sbjct: 397 TRIGEFGNMKNAWIWKAYTASGEPITYIDANGQSS----------DGTNNYVGGIINFNE 446 Query: 295 RVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 I L + Q+ + S Sbjct: 447 SGRISGMYGVTWDGSQLTVGNTELRTISFSASHRGDSNVTAAIDFSSMTQFSGSNSAAFT 506 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + + ++I + + +A N L E + ++ Sbjct: 507 YQNGNALGTLQSFAINENGEIIGTFSNGLTDILGQVALAVFNNPAGLTEIGDSL--YITS 564 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + + V+L EE + +I ++ + + ++I D +L Sbjct: 565 SNSGLAQIGTAGSGGRGTLIPGALEMSNVDLAEEFTRMIIAQRGFQANARVITTADTILG 624 Query: 474 TLLEGVK 480 L+ + Sbjct: 625 ELVALRR 631 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 37/367 (10%), Positives = 97/367 (26%), Gaps = 14/367 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ N + NI N + + + + +N Sbjct: 1 MMRSMFSGVAGMRNFQYAIDVVGNNIANVNTVGFKGSRVTFQTALLQTMKAARSPQNNIG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L + ++M+ N ++ D S Sbjct: 61 GTNPIQI--------GLGSQLATIDKIMTQGSFENTGNKTDLAIQGDGFFVLSDGSQYYY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +++ +VQ RA D + + + ++ + A Sbjct: 113 TRAGALSVDTNGTLIQSSTGYKVQGWRAIQDPATGTRYVDTNQPIGDIVISAGMTMPANA 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + V S + ++ V +D + +T P + ++ + Sbjct: 173 TTSATMEGNLNSSVGPTPFSMTVTDEDGNEHSVRFVFSKTDDDFVRQTDP--FSTKQSYT 230 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 +T E+N + G +V + G+ G + L + + Q + I + Sbjct: 231 WTAYDENNAVVSVGYIVMNQYGNVDEAGVYQNLSATATTDGQLTQADV----SGTIPADG 286 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + +S A I + + + + D +V+ Sbjct: 287 DYHAVVLDSNGNVIFSDAVTISGGNFTISDSDIVNGQNYTVIFYDETTASDEFTVATGAN 346 Query: 363 WNVKNLA 369 ++ Sbjct: 347 ISIPTAG 353 >gi|240137257|ref|YP_002961726.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] gi|240007223|gb|ACS38449.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] Length = 403 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 52/480 (10%), Positives = 126/480 (26%), Gaps = 77/480 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL+ V + N S + +++ NI+NA + + Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTT-------------------GYKRTSA 41 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +L + +++ NS ++ + S Sbjct: 42 EFSSLLLDSGDVGNYNSGAVETTLRRSVSEGGPIASTNS-DKDLAIQGNGFFVVSDAAGA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + N + + A+ ++ + V Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + V + IG + +++ V R + + Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + F D ++ G+ + S + N Sbjct: 209 MTKTAANTWSVEFFDPAAPTTPVGTTSVTFDGNGKVNGGGSALVAVPN------------ 256 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + I+ + Q + + L + S Sbjct: 257 ------------------------------GRSITVDLGGLTQLSGDHN-LSGTANGSSP 285 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + + Y D K P+A + + L A N S Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q + V++ EL+ +I+ + Y ++K+ M +++L+TL+ + Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403 >gi|218681813|ref|ZP_03529560.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894] Length = 400 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 40/446 (8%), Positives = 91/446 (20%), Gaps = 47/446 (10%) Query: 36 YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD- 94 Y T + + S + + I + Sbjct: 1 YKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVSDQGDISYTTSATDLAISGDGFFIVQG 60 Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + E N + L D V + + Sbjct: 61 PDGTPVLTRAGDFQKDDEGNLVNAAGFGLMGYSYDAGSPAVVVNGFDGLVPINVNQEGLT 120 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 I + L + S + +T Sbjct: 121 AIASTSGVFKGNLDSGANIAPV-------------------APATLPSANLATTTTDTKK 161 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 MV Y + G + N + + ++N + Sbjct: 162 FSMVAYDTLGNKVMYDFYFTKTSVAATPPPAPPAVNSSWQVAIFRNANAATGGTT----- 216 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + + + + G ++ + + Sbjct: 217 --------------------SFPYSAGGAVGTTTLDFDANGKITNSTGTVNIADTVTGQT 256 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + G + Y D NK P+A + Sbjct: 257 IKMDLSGFTQLGAAFAGTGTPNGQAASPVKDVTIDGDGIVYAKYEDGTNKPLYRIPLANV 316 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + L + N +S I V+L EL+ +I+ Sbjct: 317 ASPDKLTLMSGNVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEA 374 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++SY ++K+ ++ L+ + Sbjct: 375 QRSYTANSKVFQTGSDIMDVLVNLKR 400 >gi|295678058|ref|YP_003606582.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295437901|gb|ADG17071.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 510 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 50/496 (10%), Positives = 106/496 (21%), Gaps = 40/496 (8%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70 I NI NA+ + N + + Sbjct: 17 LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTKLSEVQQQFSQGTITTT 76 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY---------SKNLSED 121 + A+ F L + + N + + + + ++ Sbjct: 77 NQALNVAINGNGFYQLSDNGTLVYSRNGVFQLDKNGFITNAQGLKLMGYAASSAGIINTA 136 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + A Q + + D ++ LT I Sbjct: 137 QTVPLTVPTANIAPQATTSITAGLNLNAQDNIMLGAPSVTAGGANTGTLTTTGATITNAA 196 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + + ++ +S G ++ + T + Sbjct: 197 AGSNTDNYTINFTSPTTYTVSVNGGPASAAQPYTPGTAITLGNGESITFSGTPATNDSYT 256 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + N S++ + G + + N A Sbjct: 257 VAPNPTAFNQNSSTTYNYSTSTTAYDSLGGSQTVNMYFAKTGSGTWNVYAGPATGTATLI 316 Query: 302 SEKD-------------------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + P + G F + Q I+ + Sbjct: 317 GTANFNSSGTLVSTSQVNTPIANPPTFTATTTLGGFSLSIPTTDGSGTPQNITLNLGATT 376 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 QY ++ L +Y + +A L+ Sbjct: 377 QYGGKNGVNNLSTDGYAAGQLTSFTVSADGTLTGNYSNGQTAALGQIVLANFANQNGLVN 436 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N G + S + + V+L EL LI +++Y + Sbjct: 437 LGNNEYGQ--TSASGVAQISTPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANA 494 Query: 463 KLIMFTDKMLQTLLEG 478 + I + QTL+ Sbjct: 495 QTIKTQQAVDQTLINL 510 >gi|297530598|ref|YP_003671873.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297253850|gb|ADI27296.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 288 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 76/266 (28%), Gaps = 9/266 (3%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G + + + S++ + G+ + + + L D+V Sbjct: 23 GNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGTNPKQVGLGSQLAAIDTVH 82 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 Q L S + + + + I + Sbjct: 83 TQGSLQTTGRVLDLAISGDGFFILGELNNGNLINPLFTRAGNFYLDKEGYIVNADGLYLV 142 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF--DPVAGINTNVTLL 401 + G + + K+++ D + +Y D+ + +A N L Sbjct: 143 GEGYQNGAFTGKRARIQIPTDAKSVSIGADGVVNYVDAVGNLQVAGRIRLAKFPNNDGLE 202 Query: 402 EYARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + N N + + + I V+L EE + +I Sbjct: 203 KVGGNLFRETANSGTIINPNNQNEWIAYPPQESGAGSIVSGALEMSNVDLAEEFTEMIVA 262 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I +D++LQ L+ K Sbjct: 263 QRGFQANTRIITTSDEILQELVNLKK 288 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 24/157 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 +L N + I NI N + + + T+ Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAG 60 Query: 44 --TISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 +P+ V + +Q + + L + F L E+ + + Sbjct: 61 RGGTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFILGELNNGNLINP--L 118 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 E Y N L N + Sbjct: 119 FTRAGNFYLDKEGYIVNADGLYLVGEGYQNGAFTGKR 155 >gi|149195335|ref|ZP_01872422.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] gi|149134527|gb|EDM23016.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] Length = 869 Score = 89.3 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 6/289 (2%) Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 S I I+ + D ++T + + TV + ++ D Sbjct: 583 KNTSPNSFNINIAGYPSDEQDNQLFTDTFSPINGTVAAGGTAFTQSMNAAVHTTSMDIFD 642 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 + K + + + + + P Sbjct: 643 SLGAKHTLTFHFRKTHTSTGPNDPTVWKWYAEVPEPSTLDQPAYGYVKFNSDGSINSYNP 702 Query: 316 GLFIADGIKDLDNKLCQGI----SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 I + + + + + S + Sbjct: 703 PSLIFNPNNGAEPGQAVQLNFGEMGKFDGLTSFEAPSSTSGQTQDGYPGGDLQQLVVDQT 762 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 +I + + + + +A N L+ S + Sbjct: 763 GTIIGVFTNGRSYSLAQVAIAKFVNNEGLMNEGGTLFS--ASPNSGDPIVGTAGTGGRGS 820 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I S V+L L+ LI +++ + ++K I +D+ML TLL+ + Sbjct: 821 IQPSALEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQLKQ 869 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/440 (7%), Positives = 87/440 (19%), Gaps = 16/440 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N NI N + + T + Sbjct: 1 MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTIKSATAPQGDLG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L L + +++ M N ++ D S + + Sbjct: 61 GKNSLQV--------GLGATVSSVETMFKQGSIQNTDKNTDMAINGDGFFVVSSDGGKTY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 D + NF + ++ I Sbjct: 113 RYTRAGDFTFDAQGNFVDPNGYI--VQGWLADPDTHNIDTATGLKPISIPPGLTTPANPT 170 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 SK L+ D +++K + + N + + + + N Sbjct: 171 SKISIKANLNSGDHIIEKGAARPTVDQTADMNGLYDANGNKIALTPDVDSIQLAIDVNND 230 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T+ + + ++ GK + + D + + F Sbjct: 231 GTIDTNTEVFTF-----KYGTSNSDNDGKFTTIKDLLDEINSKISQSIQGPDSYKYKVFL 285 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + N+ + + P + + + Sbjct: 286 NGNGQIVDPHNLIKIQDSTHTFLSSTNNILEDVFKSLQGPSTTTASIKAIQNSFIGADDV 345 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS-DSHDL 421 + N G + + A G D + Sbjct: 346 GELFNANGDAFNLQDGQGISVNISGLGETRKFVYTSQPISAATEGCGTTGGKYQPDKPIV 405 Query: 422 HMKSQVVFNHISESYSNTVG 441 ++ S+ Sbjct: 406 ADSNEGFHWLFYSDASSDSN 425 >gi|295690742|ref|YP_003594435.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295432645|gb|ADG11817.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 587 Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 44/461 (9%), Positives = 108/461 (23%), Gaps = 21/461 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVT 54 MS+ + + S A+I NI N + Y R + + + + Sbjct: 1 MSINSAMLAGVSGLVANSSALAAISDNIANVNTVGYKRSSSNFSTLVTSGSKNQTYSAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 +++ + + +S + F E + + Sbjct: 61 VKAQTHQFISQQGLTQSTTSNLDLSISGSGFFVATEKPENLTAADTRSFTRAGSFQLDSL 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y +N + L + D + + ++ I + + + + + Sbjct: 121 GYLRNDAGLYLQGWLADPVTGTITPDPSDLMQLSSINVGTVGGTAEKTTRVGINANLRSE 180 Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 A + F D ++ + + + + Sbjct: 181 QPVAAAVSYKVGTAGSPSFTGVVDSATPAVTHSYDVVYSSTGLANPAASGDNEYQVDIKE 240 Query: 232 PRDINFEKMNSYT-VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + + Y T N I + G+ + I + Sbjct: 241 NGVVVATGIVGYDVATGALNSSNIKPKAAAGPSGTPLLTVDIDTGAPATTVTLADLGIDT 300 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 D A++ ++ +++ D + +G T+ V+ P+ Sbjct: 301 DADAKLGKLYDPSTWSMSDYAKDNTKGVKPDFEIQIPLSDSKGGQRTVTVSLLKAPGPNQ 360 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG- 409 L N N +I D K+ T++T+L Sbjct: 361 WYAELRAKPGDLANNGNGLISTGIIEFTTDGKLKSTGGLFGTTNPTSITVLASGTALAVP 420 Query: 410 ----------WLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 L + + + + Sbjct: 421 PAVQQPTWADALGIDTQEVQIDLASAAGGLTQYNSQSVVQS 461 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 48/440 (10%), Positives = 100/440 (22%), Gaps = 5/440 (1%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + T + + L + D + T Sbjct: 152 QLSSINVGTVGGTAEKTTRVGINANLRSEQPVAAAVSYKVGTAGSPSFTGVVDSATPAVT 211 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 H + S + S D + I VV ++ + + Sbjct: 212 HSYDVVYSSTGLANPAASGDNEYQVDIKENGVVVATGIVGYDVATGALNSSNIKPKAAAG 271 Query: 162 NLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 L+ T + D + L S N + Sbjct: 272 PSGTPLLTVDIDTGAPATTVTLADLGIDTDADAKLGKLYDPSTWSMSDYAKDNTKGVKPD 331 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 L ++ + +++ Sbjct: 332 FEIQIPLSDSKGGQRTVTVSLLKAPGPNQWYAELRAKPGDLANNGNGLIST--GIIEFTT 389 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 L + V AD + ++ ++ Sbjct: 390 DGKLKSTGGLFGTTNPTSITVLASGTALAVPPAVQQPTWADALGIDTQEVQIDLASAAGG 449 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 QY S + + + + + + + VA + L Sbjct: 450 LTQYNSQSVVQSVNTNGTAFGNLTNIEVDEDGYVSAIFDNGVTRRIAQVAVATFSNPNGL 509 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + N S ++ L Q ++ S V+L E + LI +++Y+ Sbjct: 510 KGV--NGNAYRVTNESGTYSLKPPGQGGAGSLAPSTLEASTVDLSTEFTGLITTQRAYSA 567 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 S+K+I D+ML+ LL + Sbjct: 568 SSKIITTADQMLEELLNIKR 587 >gi|126653740|ref|ZP_01725658.1| flagellar hook protein [Bacillus sp. B14905] gi|126589704|gb|EAZ83840.1| flagellar hook protein [Bacillus sp. B14905] Length = 329 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 2/226 (0%) Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 DG + ++ A + ++ + + + + K + ++ Sbjct: 106 DGFFMVADANGAPDPDSGFIDEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 165 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D + D+ E + G + ++ + Sbjct: 166 IVMEADDDGINPDDAPVASGDEGANLFDDDGVLTPDDGTVGPIRIPTTAKEISIGANGTI 225 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + K +A L + N + + S + + + + Sbjct: 226 EYVDLNGERKWAGQLIMAKFPNAGGLAKSGGNY--YQQTANSGAAYGQVATVAGMGKVVP 283 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 284 GAVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 329 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 32/158 (20%), Gaps = 29/158 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57 +L + N + I NI N + + + + + + + T Sbjct: 8 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 67 Query: 58 ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96 + L + + F + + A D Sbjct: 68 GVNPQQVGLGTQLAAIDTIHGGGSLQSTGRGLDLAIEGDGFFMVADANGAPDPDSGFIDE 127 Query: 97 ---NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 NN+ Y N L Sbjct: 128 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 165 >gi|288573021|ref|ZP_06391378.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568762|gb|EFC90319.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 875 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 2/148 (1%) Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 E I QY S + + + +++ ++ Y + N+ +A Sbjct: 730 FDKEEIEGVTQYGSAFTTKPYTQNGYSMGILEDFSVSNDGTIVGIYDNGQNRGLYKMALA 789 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L++ S + I+ S V++ EE + LI Sbjct: 790 MFANPQGLVKTGNTCFSK--SINSGDPSIVNAMVEGAGTIAGSSLEYSNVDITEEFTDLI 847 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + S ++I +D +L+ LL + Sbjct: 848 TTQRGFQASARVITTSDSVLEELLNLKR 875 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 32/444 (7%), Positives = 93/444 (20%), Gaps = 15/444 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53 +L + ++ + NI N + + + + V Sbjct: 1 MLRSLLTGVSGAKAHQKRLDVVGNNIANVNTVGFKKSTVVFQDLLSQTERGAMAPDGNVG 60 Query: 54 TQRSENKNMFDK----VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 ++ + + + Q E + + + Sbjct: 61 GVNAKQVGLGVQVAGIETIHTQGTVSQTGNRTDMAIQGEGYYVVRNGAENLYTRAGQFVL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 S + + ++ E+ I +++E + ++ + Sbjct: 121 DSNSDLAM--SGTGYRVQGNEMTVDEDGVISTGSELSDINIPIGRKMEAKATSTVGYRCN 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 L D ++E +S + + S T F Sbjct: 179 LDSRVDPYLPLGIPDGVKFSSEILGSEYTISVAEGEDVSDFINIRLENEADGSVETLRFS 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + ++Y E V + +G G + + + Sbjct: 239 FEGVQQSSHDESTYYPKLELVGSSGHTVNYDAAKGELSIDGTSIPMSAYMNYQAVSIDDS 298 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + + + +E +P + Sbjct: 299 TGTTHTYLAEITEIGNKAQVRLWGEGKEESSGDSQVDYFQWNVLKTEDGLFDPDSTLKMT 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 D L+ + +G + + T+ + Sbjct: 359 TGEDSQFPDPVSLFLEIDSSGKALNFRGNVSPIIGPATSNSGVNKEGDTTVTPAYTVTST 418 Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433 +D + + + I+ Sbjct: 419 DGTSATADITYRFQEGTTISDFIT 442 >gi|148546706|ref|YP_001266808.1| flagellar basal body FlaE domain-containing protein [Pseudomonas putida F1] gi|148510764|gb|ABQ77624.1| flagellar basal body FlaE domain protein [Pseudomonas putida F1] Length = 584 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 4/302 (1%) Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + A+ D L S + + ++D S T ++++ + Sbjct: 286 PAAQDANGDWVASGAAGTDQALGVTSPALVANKPFDPSDDSTYTRSFPTKVYDSQGNEHT 345 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 E+ T T+E + N GS P + + D V Sbjct: 346 MEQFYRKTGTNEWTMYTLVDGRNPFNPGSTEPL--VGTIAFNSDGSVNSMTADNTGHPVG 403 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + G+ ++ Y + + + Sbjct: 404 TSFTVVNNTFSMIGWVPAAEDASGNWSANGAVGDAAGMKMSMASTTSYNTETARMSQSQD 463 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + ++ L + + ++ +A L + W E S Sbjct: 464 GYATGILSNLSIDATGVLFASFSNGQSRAIGQVALASFANEQGLQQIGS--TRWTETYNS 521 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + I + VNL +EL LIK + Y + K I ++QT++ Sbjct: 522 GIPGIDSPKTGTLGAIESNSLEGSNVNLTQELVDLIKAQSYYQANAKTISTESTVMQTII 581 Query: 477 EG 478 + Sbjct: 582 QM 583 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 45/473 (9%), Positives = 120/473 (25%), Gaps = 27/473 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55 FN + A++Q NI N + + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKASRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 56 -RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS---- 110 + ++ ++ +A+ Q F L + S S ++ Sbjct: 62 LAAISQQFTQGDVNTTGNALDMGIQGQGFFVLSDNGSKVYTRAGSFQPSKDNFVETSDGL 121 Query: 111 -LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 L+ Y + + + K+ + + + + + + + Sbjct: 122 RLQGYMADATGK-IQKSGLTDLKIDTSALQPKPTSLIDQGINLNSSAASIPFQVYDNTKP 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + + + D + ++ + + +V + Sbjct: 181 PALAAFDPADPSTYQRSSTSTVLDADGVEHEVQQYYRKTDTNEWTMYTLVDGRNPFDPAS 240 Query: 230 TVPRDINFEKMNSYTVTS---ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 T P + T++S ++ + SN A+ A D V Sbjct: 241 TTPLAGTINYNSDGTISSMLADTTGVPSGASFTVSNGAFAMTGWVPAAQDANGDWVASGA 300 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + S + + + + K D++ + E Sbjct: 301 AGTDQALG---VTSPALVANKPFDPSDDSTYTRSFPTKVYDSQGNEHTMEQFYRKTGTNE 357 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + + +S + P + T+ T++ + Sbjct: 358 WTMYTLVDGRNPFNPGSTEPLVGTIAFNSDGSVNSMTADNTGHP---VGTSFTVVNNTFS 414 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 IGW+ D+ + V + S + E + + + + Y Sbjct: 415 MIGWVP-AAEDASGNWSANGAVGDAAGMKMSMASTTSYNTETARMSQSQDGYA 466 >gi|169831903|ref|YP_001717885.1| hypothetical protein Daud_1757 [Candidatus Desulforudis audaxviator MP104C] gi|169638747|gb|ACA60253.1| protein of unknown function DUF1078 domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 310 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 31/312 (9%), Positives = 82/312 (26%), Gaps = 12/312 (3%) Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + + + I ++T + + T I + Sbjct: 1 MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60 Query: 239 KMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 +N + + ID G + + + Sbjct: 61 SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGKYSDEGIIEYYYTRD 120 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ ++ +V G+ ++ + ++ T V + L D Sbjct: 121 GAFYVDNDGYLVSSGGLHVLGVGQNGASWLTEDAIKTVVNRTYSVEAGFSGERIRLFDPS 180 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 V N+ L P+ + + + + L N + Sbjct: 181 GVDPGLENNLTTLRIDPNGLI-FVNGRTDRAALILIDNYGNPENLTRLGGNLY-EVPLRG 238 Query: 416 SDSHDL-------HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++ S + V+L E + +I ++ + + ++I + Sbjct: 239 QNAEPTPYNEGWGVPDSGGGQGRLVSGALEMSNVDLSAEFANMITTQRGFQANARVITVS 298 Query: 469 DKMLQTLLEGVK 480 D+MLQ L+ + Sbjct: 299 DEMLQELINLKR 310 Score = 70.1 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 47/225 (20%), Gaps = 30/225 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51 ++ + N + I NI N + + + S V Sbjct: 1 MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 ++ +S + L + F L + +D+ Sbjct: 61 SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGK--YSDEGIIEYYYT 118 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNA--------EEVVQNFNTSAREVQKIRADADK 154 + Y + + + A + VV + R Sbjct: 119 RDGAFYVDNDGYLVSSGGLHVLGVGQNGASWLTEDAIKTVVNRTYSVEAGFSGERIRLFD 178 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 ++ + N I + A +D Sbjct: 179 PSGVDPGLENNLTTLRIDPNGLIFVNGRTDRAALILIDNYGNPEN 223 >gi|52785608|ref|YP_091437.1| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|163119437|ref|YP_079022.2| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|319645990|ref|ZP_08000220.1| FlgE protein [Bacillus sp. BT1B_CT2] gi|52348110|gb|AAU40744.1| FlgE [Bacillus licheniformis ATCC 14580] gi|145902944|gb|AAU23384.2| flagellar hook protein [Bacillus licheniformis ATCC 14580] gi|317391740|gb|EFV72537.1| FlgE protein [Bacillus sp. BT1B_CT2] Length = 263 Score = 88.9 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ + + + G + + Sbjct: 77 DIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYTRSGNFYRSDEGDLVTVDGLFVLT 136 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + G ++ ++A + ++ N+ +A + L + N + Sbjct: 137 ANNGRINIPQDAQSFSIAPDGTVSYVDQNNENQTAGQISLATFSNTSGLSKAGDNL--YR 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + I S V+L EE S +I ++ + + K+I +D++ Sbjct: 195 ETLSSGDPQVVVPGEGGSGKIQTSALEMSNVDLSEEFSEMIIAQRGFQSNAKIITTSDEI 254 Query: 472 LQTLLEGVK 480 LQ L+ + Sbjct: 255 LQELVNLKR 263 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/241 (6%), Positives = 49/241 (20%), Gaps = 20/241 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 +L + N + + NI N + Y + + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVVANNISNINTAGYKKSRVTFKDIVSQQLSGASSSTANRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + + ++A + + Sbjct: 61 SVNGQQVGLGATIGSIDIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYTRSGNFYR 120 Query: 110 SLESYSKNLSEDILGK------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 S E + + + +A+ + + V + + + Sbjct: 121 SDEGDLVTVDGLFVLTANNGRINIPQDAQSFSIAPDGTVSYVDQNNENQTAGQISLATFS 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 N + +S + + S + + + ++ Sbjct: 181 NTSGLSKAGDNLY-RETLSSGDPQVVVPGEGGSGKIQTSALEMSNVDLSEEFSEMIIAQR 239 Query: 224 G 224 G Sbjct: 240 G 240 >gi|301644496|ref|ZP_07244491.1| flagellar hook-associated protein FlgK domain protein [Escherichia coli MS 146-1] gi|301077160|gb|EFK91966.1| flagellar hook-associated protein FlgK domain protein [Escherichia coli MS 146-1] Length = 272 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 7/269 (2%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 R+ + + G K F G Sbjct: 10 TFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD 69 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 I A + +V+ + + + + + + Sbjct: 70 VAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGT 129 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 S T+ N L + + + + Sbjct: 130 PAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN-------RNGQALLDLQS 182 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + + + + + + + V +S + GVNL EE Sbjct: 183 NSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYG 242 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L + +Q Y + +++ + + L+ Sbjct: 243 NLQRFQQYYLANAQVLQTANAIFDALINI 271 >gi|74101658|gb|AAZ99748.1| FlgEL [Aeromonas hydrophila] Length = 397 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 47/473 (9%), Positives = 115/473 (24%), Gaps = 78/473 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ + +Q+ + I N+ NA + +S Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANA-------------------STAGFKSSRAEFAAI 42 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + Q+F+ ++ ++ + + + Sbjct: 43 YGGGQAGGVEMNNVSQNFDRNGDV------TRTGRGLDLAISGSGFFVLKDSNGQTSYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + S +Q + E++ + V D + Sbjct: 97 AGMFQRDPNNYLTTASGTRLQGYTTNDAGELQSGV------------VGDIQVKAGSLPA 144 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A D L+ L S I + S + +++++ + + T Sbjct: 145 KASDKLEFVANLKADASVIDQTAHPFDPAKSDSFSYSQSSKVYDSLGVEHTVTQYFVKTA 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + + + Sbjct: 205 DNTWQVNYAFNGTKTGSPVTME-------------------------------------- 226 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N +S + QY S+ + R+ + Sbjct: 227 -FNTNGTLKSPTTSPVLNLTPPGAEKIALSVDVARVSQYASDFNATRNQSNGYAAGDLTG 285 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + + +A L++ N+ W + S L Sbjct: 286 VKVDADGGVYATFTNGQSLLQGQVVMANFTNPNGLMQ--TNNTTWQQSFSSGQPVLGAPG 343 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + V+L EL L+ +++Y + K I DKM Q L Sbjct: 344 TGTMGSLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQVLFNS 396 >gi|213421023|ref|ZP_03354089.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 301 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 58/239 (24%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 Y F S + ++ DS + Sbjct: 62 TKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQ 121 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 D + + + +++ + P + + ++ Sbjct: 122 VTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAE 181 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + L D + + + N T + + + S Sbjct: 182 IAMASESKLDPDVDTGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLK 241 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V + + + GVNL EE L + +Q Y + +++ + + LL Sbjct: 242 TSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALLNI 300 >gi|148254603|ref|YP_001239188.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp. BTAi1] gi|146406776|gb|ABQ35282.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein) [Bradyrhizobium sp. BTAi1] Length = 585 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 158/424 (37%), Gaps = 17/424 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55 MSL A + + Q + NI NAD K Y + V++ Sbjct: 1 MSLDIARLVAFSGISATELQISVASSNISNADTKGYTEKSANQVATVTGGVGTGVSITGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109 S + K L +S +G S+ + + S + ++ L Sbjct: 61 SSNVDKLLLKSLIGANSELGAADTTNSYLEQLQQLFGSASTSGTSTTGTSLANALASLES 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 +L S + + S L + ++ +++ VQ +RA++DK+I + ++ L + Sbjct: 121 ALSSLASSPSSVSLQSAAVSALDDFASQLRSTSSGVQSLRANSDKDIASSVKSVNDDLQQ 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + +N I+ A+ D DQR+ LQ +S + +S +N D+ VYTS G L + Sbjct: 181 IADLNVQIRKMAAAGQSTADLEDQRNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +++ + + +S + G++V + S + GKI AL+ +RD +P Q Sbjct: 241 SSAHTLSYTASANVSASSSYSSGGFSGIMVDGVDVTSQITSGKIGALITLRDQTLPATQT 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 QLD++A L + + A L ++ + V Sbjct: 301 QLDQLATELKSALNAITNGASAVPPPTSL-----TGSASVSSTTALAASGTVRIAVADQS 355 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L + V +L + I+ S + + A ++N + +S+ Sbjct: 356 GNLVSYKDLDLSSYATVGDLVTALNGISGVSASLDSSGYLSISATSSSNGIAINDMTSSV 415 Query: 409 GWLE 412 G Sbjct: 416 GGGG 419 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 44/434 (10%), Positives = 113/434 (26%), Gaps = 3/434 (0%) Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + V + R+ + + + + + Q L + + Sbjct: 152 TSSGVQSLRANSDKDIASSVKSVNDDLQQIADLNVQIRKMAAAGQSTADLEDQRNSALQD 211 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 S + S + + + + +V + + A + Sbjct: 212 LSSYMNVSYYTASNGDLQVYTSSGRALVDSSAHTLSYTASANVSASSSYSSGGFSGIMVD 271 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 A L L +++ + + N V T Sbjct: 272 GVDVTSQITSGKIGALITLRDQTLPATQTQLDQLATELKSALNAITNGASAVPPPTSLTG 331 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +V + + + A + AL I + Sbjct: 332 SASVSSTTALAASGTVRIAVADQSGNLVSYKDLDLSSYATVGDLVTALNGISGVSASLDS 391 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + ++ + + + + + + + Sbjct: 392 SGYLSISATSSSNGIAINDMTSSVGGGGFSEYFGMNDLVTGTGAANFAVDSSILSGAAGL 451 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-TNVTLLEYARN 406 P+ D + + + +G +IN D + F G++ T + +YA Sbjct: 452 PTGTLD--NSATLTTGSQVLTSGSATIINQLYDKLTGSTSFSSAGGLSATTGSFADYAAA 509 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + + + S S+ GVN+ EE + + ++ Y +++LI Sbjct: 510 IVANVASKATQASSNYTAKSTAQASYASSLSSQSGVNIDEETARVSSLQNKYAAASQLIS 569 Query: 467 FTDKMLQTLLEGVK 480 + M +LL V+ Sbjct: 570 VVNSMFSSLLTAVQ 583 >gi|224373467|ref|YP_002607839.1| flagellar hook protein FlgE [Nautilia profundicola AmH] gi|223588607|gb|ACM92343.1| flagellar hook protein FlgE [Nautilia profundicola AmH] Length = 853 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 38/371 (10%), Positives = 93/371 (25%), Gaps = 11/371 (2%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + T + N + + + + + ++ D +I +L + Sbjct: 487 DSAGNAASTTALQNLQNIFEPLGSGTSTNEFLKNDV--YYFHDIQDLAYIWQIAVDDSGD 544 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEI---IGISTIVRNNNDMVVYTSDGTTLFETVPR 233 T D + ++ S I I D ++T + + +V Sbjct: 545 PLNSTTGNSGIVSINDDGQLTIKNTSSNSFNINIGGYPDEEKDNQLFTDAFSPINGSVAA 604 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ D + K + Sbjct: 605 GGTAISQAMNAAVHTTSIDVFDSLGSKHTLTLHFRKTHTSENPNDPTVWKWYAEVPAPST 664 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----ISETICVNPQYRSNPS 349 + + +P + P I + + + + Sbjct: 665 LDQPAYGYVKFNPDGSINSYNPPSLIFNPNNGSSTGQAIQLDFGTMGKFDGITSFEAPSA 724 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + +I + + + + +A N L+ Sbjct: 725 TSGQTQDGYPGGDLQQLVVDQTGTVIGVFTNGRSYSLAQVAIAKFVNNEGLMSEGGTLFS 784 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + I S V+L L+ LI +++ + ++K I +D Sbjct: 785 --ASPNSGEPIIGTAGTGGRGSIQPSSLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSD 842 Query: 470 KMLQTLLEGVK 480 +ML TLL+ + Sbjct: 843 QMLNTLLQLKQ 853 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/435 (8%), Positives = 86/435 (19%), Gaps = 20/435 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N NI N + + T + Sbjct: 1 MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTVKSATAPQGDLG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L L S A++ M N ++ D S + + Sbjct: 61 GKNSLQI--------GLGTSVSAVETMFKQGSIQNTDKNTDMAINGDGFFVVSGDGGKTY 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 D + NF + + + E + + A Sbjct: 113 RYTRAGDFTFDANGNFVDPNGYIVQGWL-----ADPETHTIDTASGVKPISIPPGLTTPA 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + +T+ + + +Y ++G + T D +++ Sbjct: 168 NPTSKIAIKANLNSGDHITEMDGTRTTVDQTADINGLYNANGEKIQLTPDVDKITLAIDA 227 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + S+ +S + IK ++ + + S Sbjct: 228 NNDGTISSTEVYTFTYGTSQTDTDRKFTTIK-------DLLDEINAIIKDPTGTTPASEY 280 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + P I P + + + Sbjct: 281 QVYLNGNGQIVDPQNRIKTEDTLSSTNTILENIFKALDGPATSTESMKAVQNSFIGADDV 340 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + N G + T + K + + Sbjct: 341 GELFNANGDAFNLEDGQGITVNINGLGETRKFIYQQTPINETEGCGTATGKYQPTNPITS 400 Query: 423 MKSQVVFNHISESYS 437 + + + Sbjct: 401 DSMEGLHWTYDSNRE 415 >gi|78776232|ref|YP_392547.1| hypothetical protein Suden_0031 [Sulfurimonas denitrificans DSM 1251] gi|78496772|gb|ABB43312.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 430 Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 36/484 (7%), Positives = 100/484 (20%), Gaps = 61/484 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRS 57 ++ F N + I N+ N + + + Sbjct: 2 MIQAFYTGINGIKSHQTSIDVIADNLANTSTLGFRGYTAEFSSLFEKSLSTTADINAGIG 61 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + ++ + + + + E Sbjct: 62 LGSRVNAITMNDSVGTLQLSERSTDMAIMGDGWFGIQGEGSPLYTRDGSFTFDRERDLVT 121 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + T+ N Sbjct: 122 ADGYYVLGTMGKNIN-------------------------------------------NG 138 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + ++ L + + +D + D Sbjct: 139 VLSEQLAEIPLANVSEQQKLRFPDKLTYPVEPTSEAKFFGNLGVTDNIRVISAKAIDSQS 198 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + +SNP GV + K + Q E + Sbjct: 199 NTNSIRLEFKKSNPQTSPGVQWDVTATAQSSGVK------------TEYNEQTSETTYLP 246 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + + + + + NP + Sbjct: 247 DEIYDTQKGVVSFDNSGIIISNTLSTVNNNGTPVKIDLGSGFNGLISMDNPFSGSSTSNG 306 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ ++ ++ + + V + L + + Sbjct: 307 TQSGELQGYDINKNAQIVATFSNGMQSAIGSVAVYHFQNDKALERAGGSRFSESTNSGKP 366 Query: 418 SHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + +S V ++ L+ +I +++SY+ ++K I D+MLQ L Sbjct: 367 IFFKDANGKNIVGTDLSNFKLEGSNVRMEVALTEIIVMQRSYDANSKCITTADQMLQKAL 426 Query: 477 EGVK 480 + Sbjct: 427 SMHR 430 >gi|149189836|ref|ZP_01868116.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148836322|gb|EDL53279.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 398 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/395 (10%), Positives = 95/395 (24%), Gaps = 6/395 (1%) Query: 89 MMSADDHYNNSPTHYISKLRDS----LESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 +S D N + ++ + S G + Sbjct: 6 ALSGLDATNTQLNTISHNIANASTYGFKEARTEFSAVYNGMQAGGVEVASISQNFDKNGS 65 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 V D I + + T+ A F T + + S Sbjct: 66 VSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTGAKLQGYGVDSNN 125 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 ++ V + + T + + + +P D S Sbjct: 126 NLLTGSVGDLKISTSSLAAQATDKLDFVANFDASSKIVDQTVNPFDPADPDSFNSSYTSK 185 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 G + Q ++ + + + + Sbjct: 186 VYDSLGNSHTVTQYFTKTADNTWEVNVQVDGGSTPAQTVPVTFNPDGTLASPTGSFNVAF 245 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 I ++ + Q+ + + + + + Y + ++ Sbjct: 246 PAAGANAMSIDISLEGSTQFGAAFGVSTNNPNGYTSGELAGVRVEDNGMVFATYTNGQSQ 305 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L + N W + S + + V ++ V+L Sbjct: 306 LQGQVVLANFANPQGLAK--TNGTAWTQSYGSGAPVMGTPGSGVLGDLTPGALEGSNVDL 363 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EL L+ +++Y + K I +DK+ Q L V Sbjct: 364 TSELVNLMTAQRNYQANAKTISTSDKLTQALFNAV 398 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 43/400 (10%), Positives = 96/400 (24%), Gaps = 22/400 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + + + Q +I NI NA + T + + + + Sbjct: 2 SFDIALSGLDATNTQLNTISHNIANASTYGFKEARTEFSAVYNGMQAGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + DH + ++Y + L Sbjct: 59 NFDKNGSVSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ ++ + A + ++N + + Sbjct: 119 YGVDSNNNLLTGSVGDLKISTSSLAAQATDKLDFVANFDASSKIVDQTVNPFDPADPDSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN--------- 236 ++ D L + + N ++ V G+T +TVP N Sbjct: 179 NSSYTSKVYDSLGNSHTVTQYFTKTADNTWEVNVQVDGGSTPAQTVPVTFNPDGTLASPT 238 Query: 237 ----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 S ++ E + F VS+N + G++ + + +V Sbjct: 239 GSFNVAFPAAGANAMSIDISLEGSTQFGAAFGVSTNNPNGYTSGELAGVRVEDNGMVFAT 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + +P N + G Sbjct: 299 YTNGQSQLQGQVVLANFANPQGLAKTNGTAWTQSYGSGAPVMGTPGSGVLGDLTPGALEG 358 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + L N + A + + Sbjct: 359 SNVDLTSELVNLMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|323700159|ref|ZP_08112071.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460091|gb|EGB15956.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 558 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 32/393 (8%), Positives = 85/393 (21%), Gaps = 6/393 (1%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + ++ L S S + + + +T ++ Sbjct: 169 FQSEPNPTTNVSIVTNLDPSAADGSTSSTNPYFAMFNNWDGSAETPLASTLYAYSTTLKV 228 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D ++ ++ D + + + D S ++ Sbjct: 229 YDDIGTAHNLTVYYDPVTMSNAGGDTVWEFMVTCEPSADRRMLSGANGLMTSIGEAQTSA 288 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + + G L + + S + + + K Sbjct: 289 SGVLMIGTLTFTTGQ-LSGMSAYTLKSNGGTNIKDLSNWSLADFSTSGFPVCTANFLGKS 347 Query: 271 KIKALLQIRDSVVP---IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + N+ + + N + Sbjct: 348 NASTAEAAEATPLQIDFGISNKDLSSNGSGAVTIGWDGGLGNVPTNAAMVGNNISNTGYL 407 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + S L + + +++ + HY + Sbjct: 408 ANFKDPAVSALATQSFDTGGSSTLYQSQNGYSAGILQNISVSREGVISGHYSNGQVLELY 467 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A L N E S I + V++ E Sbjct: 468 AVTLATFTNQHGLRREGGNLFT--ETLESGPALTGQAGSTGKGTIDGNALEMSNVDMATE 525 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I ++ + + K+I D ML ++ + Sbjct: 526 FVNMITTQRGFQANTKVITTVDSMLGEVISMKR 558 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 49/459 (10%), Positives = 106/459 (23%), Gaps = 23/459 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M L A + S++ I N+ N + + + Sbjct: 1 MGLGASLFSGISGLTVHSERMTVIGNNLANVNTTGFKGAMMQFEDLASADFATVNGVGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + A + + + R Sbjct: 61 GRGVRVSTIYSDWGQGAFETSTEATDMAISGDGLFVV-----SPLGEDEKYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDN----AEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + Y + +L I+ + +A + I + +E S Sbjct: 116 DSDGYLVDPHGYVLQGWEIERSTTTVTTTTSSTTETANSARIIGTPTNIRMENFQSEPNP 175 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 + V N S + + + +E ST+ + + VY GT Sbjct: 176 TTNVSIVTNLDPSAADGSTSSTNPYFAMFNNW-DGSAETPLASTLYAYSTTLKVYDDIGT 234 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TV D E G+ I V+ I Sbjct: 235 AHNLTVYYDPVTMSNAGGDTVWEFMVTCEPSADRRMLSGANGLMTSIGEAQTSASGVLMI 294 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-LDNKLCQGISETICVNPQY 344 + +++ K N +++ +AD + ++ + Sbjct: 295 GTLTFTTGQLSGMSAYTLKSNGGTNIKDLSNWSLADFSTSGFPVCTANFLGKSNASTAEA 354 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 D G +K N N + + ++ + A Sbjct: 355 AEATPLQIDFGISNKDLSSNGSGAVTIGWDGGLGNVPTNAAMVGNNISNTGYLANFKDPA 414 Query: 405 RNSIGWLEKNRSDSHDLHMKSQV-VFNHISESYSNTVGV 442 +++ + S L+ + + GV Sbjct: 415 VSALATQSFDTGGSSTLYQSQNGYSAGILQNISVSREGV 453 >gi|195953201|ref|YP_002121491.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932813|gb|ACG57513.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 831 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 142/431 (32%), Gaps = 8/431 (1%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNM 62 ++ N N Q +NI NA N NY + + + P +++ + Sbjct: 3 FGSYDLVTNALNIFKQAIDITSQNITNASNSNYAQEVPIIQDTYPIGISMQDIKRIQNLY 62 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 F ++L S+++ + + + N+S T Y + + S Sbjct: 63 FFQLLQNKSASLDYFNTRLQYNKQVQNIFNIVGPNSSSTSYDDAFFSAFTQLFTDTSNVG 122 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V+ A VQN N++A + + K ++ + + L+ +N I A Sbjct: 123 YQNQVLTTASNFVQNLNSNASTINNLAYQVPKSSLQYLNQINTLIKNLSSLNQQITTSYA 182 Query: 183 ----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + HD + LDQRD + ++S++I ++ + + + + G TL + Sbjct: 183 LTYSNAHDYKELLDQRDAYISQLSKLISVNVQEDSIGRVHISINGGFTLVDGTNYWKLAL 242 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + + + + + + V G++KA++ ++ + D +A I Sbjct: 243 GGSGNSPYQTIEWLNDNNQAI--DITNYVQGGELKAMIDFSYD-ANNYKIEQDNVAANAI 299 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + N V L D + I S+ + Sbjct: 300 MNTKIPVQSGSNYYLVQNLTNTDSPIGNQGETWNFPPNHISSTAAPLSSLGVSNGSLTFY 359 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + +S + + +F+ ++ + + + ++ Sbjct: 360 TGTTPSYTISNYGALNLVQLSNSIDASGMFEANISLDPSGNYYLQITPTYSNTAGSLTNV 419 Query: 419 HDLHMKSQVVF 429 +++ S + Sbjct: 420 YNIVDSSSNIV 430 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 46/407 (11%), Positives = 122/407 (29%), Gaps = 2/407 (0%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 + S ++S D+ ++ ++ SL+ ++ + A Sbjct: 424 DSSSNIVFNSGSGPVGVLSFVDNSSSGTYASLNYTDMSLDQIVNTINNSPTLQ-GKYYAN 482 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 V F + + L N L +T N ++ Sbjct: 483 IVSSPFVDMPIGLSSSTDTISQTGVLTFRNNTTALFSITYTNQSLVQIANELSQIPSATL 542 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 ++++ + + ++N N+ + S + + ++ S++ Sbjct: 543 FSASIVKEQDGLYHLRIQIKNPNEYNIVDSGSSFTSLYSLHIASLDQSKYGIQDSKNTYT 602 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 F V+ ++ S+ G+ L +V + + + + S + +P Sbjct: 603 FSKNVISNTVSLSSYGIGQNATLTFYNGNVALYSISNYGQYSLNSLTSLIDSNPALLGLF 662 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + + DG L + T+ + S + +++ P Sbjct: 663 SASVVSNPDGTYSLAISSSNPSNYTLTDSSSNFLMGGG-NIYKSEMVFEGIDASSISVNP 721 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 L + + + + + IG + + + + N I Sbjct: 722 SLGAILQNVDPNSASNFSYYSNSWWASSKSLYQTLIGSVASTVNILQTSYSSMSSLVNSI 781 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S + GV+L ++ L ++Q Y S ++ + ++QT + + Sbjct: 782 SSQVAQVQGVSLDQQYITLQNLQQDYQASASIVGILNNLMQTTINMI 828 >gi|303326942|ref|ZP_07357384.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] gi|302862930|gb|EFL85862.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] Length = 817 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 39/414 (9%), Positives = 99/414 (23%), Gaps = 14/414 (3%) Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 Q + ++ + + ++ + + LG + Sbjct: 407 SQAQKYIMELDLGLKNIGSPAWANPTATTIKTDALGNPVDAGGNALGVSKYGYYNLATGF 466 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 + A + D +S + + N + + K Sbjct: 467 YGQDAAGHDLLADDKGFYYRDPVSGDNIYGTITVGGNQDVSYDDTIKGYYFTDTTVTPNA 526 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 + G T +D +GT + + + + + D Sbjct: 527 KCYDVTVDGGGTTHPAYSDADGSYYNGTVPVAGGGAAVPGKIYGTIDDGGVTRLVQHDAT 586 Query: 258 V-----------VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + K+K + + A L ++ P Sbjct: 587 GYFYIDGADARQAVTGTFDKIATSKVKPDTYVAIDNTTRVAPDYETKANSLDSLKTQLVP 646 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 +E P + + +++ + + L +V+ Sbjct: 647 DGVTAEGNPKYKAVVNFATNAASMTTTERQDGASAANSKTSVTQNATQDGYASGTLSDVR 706 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + Y + + N L N N S + + Sbjct: 707 -IDTSGIIYGVYSNGTTLPLYQITMYDFQNNQGLWREGGNLFS--STNDSGEPRIGVAGD 763 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F V++ E +I ++ + ++K I D ML+T++ + Sbjct: 764 NGFGTTKAYNIEQSNVDMSREFVQMITTQRGFQANSKGITTVDTMLETVIGMKR 817 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 28/413 (6%), Positives = 81/413 (19%), Gaps = 26/413 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56 M L A + + + + NI N + + S + + TQ Sbjct: 1 MGLSASMWTSVSGLLAHGNKMNLVGNNIANVSTIGFKSQRMDFNDYLYMSGSSASGPTQI 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLESY 114 + + + A+ + E Sbjct: 61 GAGVSTYAVLGDYSQGALETTNSGTDLAIDGNGYFGVRKTGSDQKYYTRAGDFFFDKERK 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N ++ ++N + + F++ A + + + S Sbjct: 121 LVNPEGMVVQGWKVENDKALT--FSSGATNLGTGTSSESSYVGSGSPTDIVLSSWNLPPQ 178 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + D+ ++ + + + + + Sbjct: 179 QTTNVSFTMGLTNNGEGDKTTSASSPLTALFDL-----------WDGTSNPPIAKNAFSA 227 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + + + ++ D V S + I+ L + + Sbjct: 228 KSEINVYDEGGNAHQLSVYYDQVATSKEGTNGSTAYTIEGLPA-------GYTVYEYLVT 280 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + D + + + L + Sbjct: 281 IPPSEDNRSFGGEGYDEATNTWTKDPTKFYDDPTNGTNKQAGVLMSGQLIFNASGQLVNQ 340 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + Y + + + N T A + Sbjct: 341 TAYTFGATGTPAANDQYAGSPDSKESWQPTKLSSNGLPVFTANFTGQPLANSV 393 >gi|237817502|ref|ZP_04596493.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787337|gb|EEP61554.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 456 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 39/425 (9%), Positives = 106/425 (24%), Gaps = 8/425 (1%) Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + K S G Q M + + + + Sbjct: 36 DGLIFKRFRTRSCFAGNTLTCQELPMSLYGMMRTGVSGMNAQANRLSTVADNIANASTVG 95 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 S + +R + + ++ L+ ++ Sbjct: 96 YKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQG 155 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PRDI 235 S + D ++ + T G + P + Sbjct: 156 PGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEG 215 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + S G ++ S KG+ L + Sbjct: 216 STAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNVSVKN 273 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G + + + + +L Q ++ + + Q + + + Sbjct: 274 AADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVI 333 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + K P+A + + + + N +L Sbjct: 334 NGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FLPSAE 391 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S L I ++ +EL+ +I+ ++SY ++K+ +++ L Sbjct: 392 SGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVL 451 Query: 476 LEGVK 480 + + Sbjct: 452 VNLKR 456 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 61 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 120 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 121 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 180 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 181 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 240 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 241 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 300 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 301 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 360 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 361 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 420 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 421 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 453 >gi|291334314|gb|ADD93975.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 449 Score = 88.2 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 36/417 (8%), Positives = 107/417 (25%), Gaps = 6/417 (1%) Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + S+ L + S+ + T+ + + ++ N + Sbjct: 33 NISSGSTGEALAGGSVVGVDLAQNASSVAVGRYNLTNLGGRDQTDTAEFATNKIGKGANQ 92 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + E + + + + + + + + ++ Sbjct: 93 IMGFPREGIEGYRPPTGLVSKPAVVVGLEGLMDMTQPFTITTLANENIFNVVVGGVSASI 152 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + D L + E I + + + + + Sbjct: 153 AIPEGNYKGDTLAVALEERINSMKNPISGQSVGGVDVKYDAVANNLTFTTATTGEGNTLA 212 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + + + + + V + R + + + Sbjct: 213 INGALKFGLKDIPLGLGETTMVRQPVQATDELGRPLFISPAGEIVANNQDFVDNMVENFY 272 Query: 306 PIAGNSENVPGLFIADGIKDLD----NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P+ + + + + ++ Q S Sbjct: 273 PLYLDEGELTFDRDGQIVSPITDVKYAGGLTELTLDFSTATQLDQPFSAREVTQDGFSAG 332 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + Y ++ Y + N +A + L + + ++ S +L Sbjct: 333 RLTNLEIDTYGNVQAGYSNGQNVVLGKIMLASFASESGLKQIGNS--TFIATAASGDPEL 390 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ F I V++ EEL LI +++Y + K I + M QT++ Sbjct: 391 GEGAEDGFGQILSGSIERSNVDITEELVNLITSQRNYQAAAKAIETSTSMTQTIINI 447 >gi|16125154|ref|NP_419718.1| flagellar hook protein [Caulobacter crescentus CB15] gi|221233884|ref|YP_002516320.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] gi|6226612|sp|P35806|FLGE_CAUCR RecName: Full=Flagellar hook protein flgE gi|3493243|gb|AAC33329.1| flagellar hook protein [Caulobacter crescentus CB15] gi|13422168|gb|AAK22886.1| flagellar hook protein [Caulobacter crescentus CB15] gi|220963056|gb|ACL94412.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] Length = 591 Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 41/411 (9%), Positives = 101/411 (24%), Gaps = 9/411 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVT 54 MS+ + + S A+I NI N + + R + + + + Sbjct: 1 MSINSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGNKNQTYSAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 +++ + + +S + F E + + Sbjct: 61 VKAQTHQFISQQGLTQSTTSNLDISISGAGFFVTTEKPENLTATDTRSFTRAGSFQLDNL 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y +N + L + D ++ + ++ I + + + + + + Sbjct: 121 GYLRNDAGLYLQGWLADPVSGLITPDPSDLMQLASINVGSVGGTAEKTTRVGVNANLRSE 180 Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 A + + D + + S+ N V Sbjct: 181 QPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEYLVDIKENGV 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ T S+ I G + + + + D + D Sbjct: 241 IVATGKVAYDAATNELVSSTIDYKGASPVTGSMTTTRINAAGTTVNLADLGIVNASGADD 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ +++ D + +G T+ ++ P+ Sbjct: 301 AEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSKGGQRTVTLSMLKGPGPNQW 360 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 L N N +I D KN T +T+ Sbjct: 361 YAELRAKPGDLANNGNGQISTGIIEFTTDGKLKNTGSLFGTTSPTAITIKS 411 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 44/443 (9%), Positives = 101/443 (22%), Gaps = 7/443 (1%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 T + + L + + D NS Sbjct: 152 QLASINVGSVGGTAEKTTRVGVNANLRSEQPVAAAVSYKVGTAGSPSKTNVVDSATNSHN 211 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + +E ++ + +A K Sbjct: 212 YDVVYSSTGIANPVSGNNEYLVDIKENGVIVATGKVAYDAATNELVSSTIDYKGASPVTG 271 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ + D + L S N+ + Sbjct: 272 SMTTTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDF 331 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 L ++ + + + + D Sbjct: 332 EVQIPLSDSKGGQRTVTLSMLKGPGPNQWYAELRAKP-GDLANNGNGQISTGIIEFTTDG 390 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + + I S + D Q + + Sbjct: 391 KLKNTGSLFGTTSPTAITIKSSGYIAPTVTPPAVQPPTPPTWADALGIDEQEVQIDLASA 450 Query: 342 ----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 QY S + + + + + + + +A + Sbjct: 451 AGGLTQYNSQSVVQSVNTNGTAFGNLTNIEIDEGGYVSAIFDNGVTRRIAQVAIATFSNP 510 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L N + N S ++ L SQ ++ S V+L +E + LI +++ Sbjct: 511 NGLKGV--NGNAYRVTNESGTYSLKAPSQGGAGALAPSTLEASTVDLSQEFTGLITTQRA 568 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y+ S+K+I D+ML+ LL + Sbjct: 569 YSASSKIITTADQMLEELLNIKR 591 >gi|332981440|ref|YP_004462881.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332699118|gb|AEE96059.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 265 Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 10/241 (4%) Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 N ++ V S++ + +V+ Q + + P Sbjct: 25 NIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGGTNPQQIGLGAAVGAIDVLHTPGGI 84 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG----------SVSK 359 + P +G T N ++ + + G + Sbjct: 85 ERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLDADGNLVTPDGMYVQTAGGGNIIID 144 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 L+ + + D +A L + +N + + Sbjct: 145 PTLYVSIVIDKTGQISGIQADGTVDTLDIVGLAKFVNPGGLEKIGQNMYRETISSGPPAT 204 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + Q +++ V+L EL+ +I ++ + ++++I +D+MLQ L+ Sbjct: 205 GIVQPGQDGTGYLTPGALEMSNVDLSRELTDMIITQRGFQANSRVITTSDEMLQELVNLK 264 Query: 480 K 480 + Sbjct: 265 R 265 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 7/177 (3%), Positives = 29/177 (16%), Gaps = 12/177 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + I NI N + + Sbjct: 1 MMRSMFSGVSGLRAHQTRMDVIGNNIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGG 60 Query: 63 FDKVLHAHSSAIGQ------------QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + +A+G + + Sbjct: 61 TNPQQIGLGAAVGAIDVLHTPGGIERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + N + + + + + ++ ++ Sbjct: 121 ADGNLVTPDGMYVQTAGGGNIIIDPTLYVSIVIDKTGQISGIQADGTVDTLDIVGLA 177 >gi|224534079|ref|ZP_03674662.1| flagellar hook-associated protein 1 [Borrelia burgdorferi CA-11.2a] gi|224512778|gb|EEF83146.1| flagellar hook-associated protein 1 [Borrelia burgdorferi CA-11.2a] Length = 151 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 50/130 (38%) Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + D + + I + + + I N+TL +Y N+ Sbjct: 20 KVADIIDSDPSKIASGIKNPTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTAS 79 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S + +++ + GVN EEL+ +I+ +Q++ ++K I + Sbjct: 80 NIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSV 139 Query: 470 KMLQTLLEGV 479 +++ T++ + Sbjct: 140 ELIDTVINKM 149 >gi|254255087|ref|ZP_04948404.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124899732|gb|EAY71575.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 419 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/473 (9%), Positives = 105/473 (22%), Gaps = 86/473 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + Q I +NI NA Y + T + + Sbjct: 30 SFNIALSGIKAINGQLGEISQNIANAGTYGYKAGRANFSAFYLGSTPGGVMVGS---TSQ 86 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ S + + + D + + + + Sbjct: 87 AMNVAGSLVSTGSGMDAALPGNGFFVTRDANGALVYSRVGRFGTDQHGNVIDYMGRKVQG 146 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ Sbjct: 147 YAAAGGGQIGD-----------------------------------------LSIPGGGI 165 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 A ++ + ++ T+ +++ R+ + Sbjct: 166 PAKASESVAYAGNMSADWVVPANGTFDKDDPQSYNRMSSQTVLDSLGREHVVNQYFVKGP 225 Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 ++ +DG V + + AL+ V + Sbjct: 226 DNQVTVHYTMDGEAVGAPVEMTFDEH--GALISPTGKVALDL-----GTPAGAAALAVQI 278 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 D G+ T + + + + G ++ N Sbjct: 279 DYSGTTMFGGEATTTRRSADGHKPGTVTGVVLTEDGSLEVQYSNGEKSIAGQLAVATFQN 338 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 L H + + AG Sbjct: 339 ADGLVSVSGTGWHASAAAGEALYGVAGAGPID---------------------------- 370 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++V + +S L EEL L+ +Q+Y ++K++ ++M++TL++ Sbjct: 371 -KLVVGALEQSNVE-----LTEELVNLMSAQQNYQANSKVLSTENEMVRTLMQ 417 >gi|56964026|ref|YP_175757.1| flagellar basal body rod protein FlgG [Bacillus clausii KSM-K16] gi|56910269|dbj|BAD64796.1| flagellar hook protein FlgE [Bacillus clausii KSM-K16] Length = 267 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 2/201 (0%) Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + I G+ + N + Sbjct: 69 SGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYFDNEGNVVN 128 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + Y P R + + ++I N + +A Sbjct: 129 SSGAYLLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLGIANFANPEG 188 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + S +L + I Y V+L +E S +I ++ + Sbjct: 189 LNSAGGSLFT--ATPASGPANLVIPGTQGTGDIQSGYLEMSNVDLADEFSEMIVAQRGFQ 246 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++++I +D++LQ L+ + Sbjct: 247 ANSRIITTSDEILQELVNLKR 267 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 13/195 (6%), Positives = 36/195 (18%), Gaps = 13/195 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ + + + NI N + + + M Sbjct: 1 MIRSMYSGISGMKGFQTKLDVVGNNIANVNTHGFKKGRVMFQDMVSQQVQGPMAATPNRG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + + A +++ + Sbjct: 61 GVNSKQIGSGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E N S L + + + + + I+ + + + L Sbjct: 121 DNEGNVVNSSGAYLLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLGI 180 Query: 170 LTVVNDAIKFKTASK 184 N Sbjct: 181 ANFANPEGLNSAGGS 195 >gi|328958276|ref|YP_004375662.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] gi|328674600|gb|AEB30646.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] Length = 289 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 24/275 (8%), Positives = 70/275 (25%), Gaps = 6/275 (2%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + + T R + + + + N + V + + + Sbjct: 17 TKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQVGLGVQVGSIDTVMTG 76 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV----PGLFIADGIKD 325 G +++ + D + + + ++ + + GL + + Sbjct: 77 GSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSGNLVTSSGLQVQGYSQG 136 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 N ++ ++ Y + Sbjct: 137 APATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVDNDGFIVGSYSGGKSMV 196 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + L + N S + + + V+L Sbjct: 197 LGRVGLTSFSNPDGLQKNGGNLYS--ASANSGDPVAGNPGDAGYGSVRSGFLEMSNVDLA 254 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +I +SY +++ I +D ML+ L+ + Sbjct: 255 NEFTEMIVTSRSYQANSRSITTSDTMLEELINLKR 289 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 37/197 (18%), Gaps = 9/197 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 +L N + I NI N + + Q N Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQ 60 Query: 62 --------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 D V+ S + L E N+ L Sbjct: 61 VGLGVQVGSIDTVMTGGSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 S + F + + + I L +V Sbjct: 121 NLVTSSGLQVQGYSQGAPATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVD 180 Query: 174 NDAIKFKTASKHDAHDF 190 ND + S + Sbjct: 181 NDGFIVGSYSGGKSMVL 197 >gi|205355740|ref|ZP_03222510.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346517|gb|EDZ33150.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 852 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/396 (10%), Positives = 105/396 (26%), Gaps = 11/396 (2%) Query: 93 DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + N+P + + ++ + + + + + + Sbjct: 460 NQANINTPGTPENNYQLAMNGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFEVT 519 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D + + + N A + + + ++ +ST Sbjct: 520 GQDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 579 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T + + S + + + V + S G Sbjct: 580 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 639 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + IR P N E ++ + + + P Sbjct: 640 GNEWQMIIR-VPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQ 698 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNK 384 +S + + + + + + +++ + + Sbjct: 699 QIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTF 758 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A + N L E N + S + + + S V+L Sbjct: 759 AVAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDL 816 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 817 SRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/435 (6%), Positives = 83/435 (19%), Gaps = 41/435 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + +N + D+ +++ + ++ + N + V Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 V F + E I++ + + Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGEGARANQGNNGVFD 282 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPNDTRDGTG 342 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 V +++ S + + N+KN+ + N + N +P N+ Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVAGNPADFDWNNIN 402 Query: 400 LLEYARNSIGWLEKN 414 L I Sbjct: 403 LRPAGNPIIRGNGSA 417 >gi|86150552|ref|ZP_01068776.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839004|gb|EAQ56269.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni CF93-6] Length = 852 Score = 87.8 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/396 (10%), Positives = 105/396 (26%), Gaps = 11/396 (2%) Query: 93 DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + N+P + + ++ + + + + + + Sbjct: 460 NQANMNTPGTPENNYQLAMSGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFEVT 519 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D + + + N A + + + ++ +ST Sbjct: 520 GEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 579 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T + + S + + + V + S G Sbjct: 580 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 639 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + IR P N E ++ + + + P Sbjct: 640 GNEWQMIIR-VPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQ 698 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNK 384 +S + + + + + + +++ + + Sbjct: 699 QIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTF 758 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A + N L E N + S + + + S V+L Sbjct: 759 AVAKIAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDL 816 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 817 SRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/435 (6%), Positives = 82/435 (18%), Gaps = 41/435 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + +N + D+ +++ + ++ + N + V Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 V F + E I++ + + Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGQGAQANQGNNGVFD 282 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPNDTRDGTG 342 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 V +++ S + + N+KN+ + N + N +P + Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPNNSAGELINIRVTGNPADFDWNRIN 402 Query: 400 LLEYARNSIGWLEKN 414 L I Sbjct: 403 LRPAGNPIIPGNGSA 417 >gi|88799021|ref|ZP_01114602.1| Flagellar hook protein FlgE [Reinekea sp. MED297] gi|88778248|gb|EAR09442.1| Flagellar hook protein FlgE [Reinekea sp. MED297] Length = 1472 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 43/391 (10%), Positives = 104/391 (26%), Gaps = 14/391 (3%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 Y +S+ + + + DIL + I V + + L Sbjct: 1083 INSYSGTSLNSISADLDDETGDILINSSIGIDISVAIESPREQDGLTVQGYTGTPPVTLG 1142 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + D + + + + + L + S + ++ Sbjct: 1143 RGADAETNARIGGYVDIVLNEGYTMTEPDPRVAGLFNGLTESSFEEYVINEFNPDDPETY 1202 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 S T+++++ + + P ++ V + +L Sbjct: 1203 NESASLTVYDSLGNQHRLQLFYVKDPEDPARPQALNSWTVYAQIDGENVGDPDASLPFPE 1262 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------LD 327 + + +L A + + + + N + V ++G D Sbjct: 1263 NIEPTYAEFKLYFNADGTLDEENTGEWLISNWDPVDENGDSNGAYTSLNVAEGGSLPIPD 1322 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 S + QY + + + Y + + Sbjct: 1323 PNTNSNFSVSFGGTTQYGGPFARYNFQQDGYASGRLKDLEIDDDGTIYARYTNGEAQVLG 1382 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A L + W E S + + + + V+L E+ Sbjct: 1383 QVALASFANMEGLNPVGQ--TEWQESFESGDATIGEPGTGLLGTLQSAALEDSTVDLSEQ 1440 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L LI +++Y S K I + + QT++ Sbjct: 1441 LVHLIIAQRNYQASAKTIETANAVTQTIINL 1471 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 37/450 (8%), Positives = 98/450 (21%), Gaps = 23/450 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F + A++ NI NA + + + V Sbjct: 2 SFGSGLSGVAAANKDLKITGNNIANASTTGFKASRAEFGDAYTTSILGMGQDPIGSGVNV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + +S + F + N+ + Y Sbjct: 62 NNVGQKFEQGNISQTNSVLDLAIDGNGF------FVTEYPNNSVTYTRSGIFGIDKDGYI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISNLRRFLSELTVV 173 + L ++ V Q R E ++ + L + Sbjct: 116 VSNQGATLQGFGVNENGIVSGILTDLRVDAGSQPPRGTHGVEAQVNVPAGANVLQSIGST 175 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + I G ++ + T G Sbjct: 176 TRTTGLAVGVAQVGPAQDTTTTLTPIGIPTTEGTASQIVGGPIGFSGTVPGINFPWQPNT 235 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ N ++ + L+ ++ + + ++ Sbjct: 236 SQASSTIDFTLQGPNINGGLSPLTATVQPFSDSIIYDDVNDLVSSINASINGDPDLAGKV 295 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 V+ AG ++ + + ++ ++ + L Sbjct: 296 QAVVNNFGGITFETAGTYATDGTNIVSIADNVNNLSDPEYLNFGSTGVTFAGNSVAGLNI 355 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ + L +NL +N + + I + E + Sbjct: 356 TGADTGSRLTGGRNLNSLDSTVNFFDGAAVAGQDLVYNVNIGGTLFANETFTFNAAGYAT 415 Query: 414 NRSDSHDLHMKSQVVFN-----HISESYSN 438 + + DL+ ++ I+ Sbjct: 416 LGAFAADLNAQASAGLQAEGQFQINAGRLE 445 >gi|301631988|ref|XP_002945073.1| PREDICTED: flagellar basal-body rod protein flgF-like [Xenopus (Silurana) tropicalis] Length = 430 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + Q+ + + N+ ++ Y + + +A Sbjct: 63 LDDVTQFGTKFAIAETTQDGYTAGQLTGINIGPDGTILTRYSNGVTRPEGVVALASFRNT 122 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L + N W+E S + + F + V+L EL ++ +++ Sbjct: 123 QGLSDIGNNL--WVETFESGQPTVGQPTSGSFGALRSGALEDSNVDLTAELVNMMTAQRA 180 Query: 458 YNISNKLIMFTDKMLQTLL 476 Y + + I D+++ TL+ Sbjct: 181 YQSNAQTIKTQDQVISTLV 199 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 44/465 (9%), Positives = 104/465 (22%), Gaps = 53/465 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + + AS+ I NI N+ + T + Sbjct: 2 SFQQGLSGLTAASKNLDVIGHNIANSGTVGFKASRTEFDEMVASAIGSA----------- 50 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + IG L + + + T L Sbjct: 51 --NGTNGGIGVGVKLDDVTQFGTKFAIAETTQDGYTAG------------------QLTG 90 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 I ++ ++ + + A A +S++ L T + + Sbjct: 91 INIGPDGTILTRYSNGVTRPEGVVALASFRNTQGLSDIGNNLWVETFESGQPTVGQPTSG 150 Query: 186 DAHDFLDQR--DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D + +E++ + T R Y S+ T+ Sbjct: 151 SFGALRSGALEDSNVDLTAELVNMMTAQRA------YQSNAQTIKTQDQVISTLVAHRQA 204 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 +++ + +G + +VP + E + + + Sbjct: 205 VLSNNLANVSTNGFRAEMSTFRSVPM----------QGDGATTRVFALEATSGHVQTPGQ 254 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 N + + ++ LD + + V + S S + Sbjct: 255 VQRTGRNLDAMAVGPAWFAVQGLDGTEAYTRAGSFQVTQAGQLVTSTGLPVLSDGGTPID 314 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 L + + L + S + Sbjct: 315 VPPGAEITLGADGTLTAQTAGQPPAPVGRIKLATPGLDDPLQRGNDGLFRTASGAPLAQD 374 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + VN E + +I + + +L+ Sbjct: 375 PNAALL----SGALEGSNVNAVESMVGMIAAARQFEQQMRLLQTA 415 >gi|295096225|emb|CBK85315.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 402 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 96/412 (23%), Gaps = 13/412 (3%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 S + SA + + + S ++ T Sbjct: 3 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++ DA+ + + + +VN T Sbjct: 63 DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPVA 122 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 Q Q IS + + T + F+ N + Sbjct: 123 GTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNST----DTAPTVAFDPSNPDSYN 178 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + D + N K + A S ++A L + S Sbjct: 179 KKGTVTVFDSQGNAHNMNLFYVKNETPANSWKVYSQDGSVAGDAAKLATTLTFNESGVLT 238 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + Q + + + K Sbjct: 239 GGDDIKITT-------GTVPGATPATFDMSFANSMQQNTGANNIVATSQNGYKPGDLVSY 291 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ +Y + + +A N L N W S L Sbjct: 292 QINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 79/396 (19%), Gaps = 9/396 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F + + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + VQ A K + ++ Sbjct: 116 LTGYPVAGTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNSTDTAPTVAFDPSNPD 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S + + + N+ V + Sbjct: 176 SYNKKGTVTVFDSQGNAHNMNLFYVKNETPANSWKVYSQDGSVAGDAAKLATTLTFNESG 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + I V ++ + +++V QN V Sbjct: 236 VLTGGDDIKITTGTVPGATPATFDMSFANSMQQNTGANNIVATSQNGYKPGDLVSYQIND 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + S + + + N + S + L GS + L Sbjct: 296 DGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N A DL + + A Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391 >gi|299534778|ref|ZP_07048108.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] gi|298729866|gb|EFI70411.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] Length = 322 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 2/226 (0%) Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 DG + ++ A + ++ + + + + K + ++ + Sbjct: 99 DGFFMVADANGAPDPDSGFIDEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGDE 158 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D + +N E + D G + ++ + Sbjct: 159 IVMEADDDGINPENAPIASGDEGANLFDDDGVLAPDAGDVGPIRIPTTAKEISIGPNGTI 218 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + K +A L + N + + S + + + + Sbjct: 219 EYVDLNGNRKWAGQLIMAKFPNAGGLAKVGGNY--YQQTANSGAAYAQVATVAGMGKVVP 276 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 277 GTVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 322 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 30/156 (19%), Gaps = 29/156 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57 +L + N + I NI N + + + + + + T Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTIGFKKGRVNFKDLMSQTQAGASAATATRG 60 Query: 58 ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96 + L + F + + A D Sbjct: 61 GVNPQQVGLGAQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIDE 120 Query: 97 ---NNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 NN+ Y N L Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAG 156 >gi|121613214|ref|YP_001001371.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|167006263|ref|ZP_02272021.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|30721660|gb|AAP34261.1| FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|87248993|gb|EAQ71955.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] Length = 838 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 45/395 (11%), Positives = 111/395 (28%), Gaps = 9/395 (2%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + N+P + R+++ N + T + Sbjct: 446 NQANINTPGTAENNYRNAVNGSLLNTTVRTFRTTEDLRELLQRDARYGVDYDGSGGFEAD 505 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 ++ + E + N ++ + ++ Sbjct: 506 GSDVNEGVKVTVGATGEFIISNPNVQSTPPNGIVQNNRRPHDISFNVTAYTDAKGKVSTN 565 Query: 213 NNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + DG T + F S + + + V + S G Sbjct: 566 MAFTNIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 625 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + IR + +++G+ + + + + + + N+ Sbjct: 626 GNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSLANYSPKTINFSPNNGAAPNQQ 685 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKN 385 + T N S+ S G + + + + +++ + + Sbjct: 686 IKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFA 745 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 +A + N L E N + S + + + S V+L Sbjct: 746 VAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLS 803 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 804 RSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 838 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 30/421 (7%), Positives = 84/421 (19%), Gaps = 38/421 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212 + +NL LS T + + D + + + + + Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ G L + I +S T N + + + Q + G Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYADSKFSTDVPNGVNVFNPNTQATQNGVIFWGDE 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + ++ + + + ++ G+ + Sbjct: 293 NNAVNLDITLNGVRIQNNSIKSLDQAIEYINTFTAPTDTREGTGVKAVRKADGSGIEFIN 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ N + + W N + +S Sbjct: 353 TNADGTTDNMKNIDLVVNQANTAGERHNLTWQANNNSFQATSRKQGANSVWIPGNNPVNG 412 Query: 393 G 393 Sbjct: 413 T 413 >gi|330721146|gb|EGG99270.1| Flagellar hook-associated protein FlgK [gamma proteobacterium IMCC2047] Length = 604 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 48/425 (11%), Positives = 108/425 (25%), Gaps = 8/425 (1%) Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 +V + + L F + ++ + I+ + Sbjct: 187 VVRSPTGAISRVGSSVDGGMMSGLLSAQFGVIDNALNNLGRVALGLSDAINTAHNLGMDL 246 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 NL D L + D + + + + ++ ++ ++ + T N Sbjct: 247 ENNLGGD-LFTGINDASVVSQRTVAGANNSLPSDQSVTVTVSDISQLSVSDYQLTFTGPN 305 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + + L + + V + S + + Sbjct: 306 TYVLIRNSDGKTNTALDPSLTGTLPPAAPGTNATVTVDGLTIDLSRPSGSFSTGDRFLLQ 365 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 N V + + S + ++ D+ F ++ Sbjct: 366 PTRGFSNELAVQVNRAEELALASPIRTTGASTNTGTAGISAGEVTDTSTAFFTTTSQALS 425 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L+ F+ P +A I SF Sbjct: 426 PPLVIQFTSPTTYNILDNTNPAAPVALVPPQTGLAYPPASPNGILP-------ASFGFQV 478 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +A + + N +TL + Sbjct: 479 EITGVPANGDSFEVAYNTGGVLDNRAGLAMVKVQTTDTIGNNQLTLEAAYGLFTQEVGTR 538 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + S+++ + GVNL EE + L++ EQ+YN S ++I ++ T Sbjct: 539 TSTARGDAEASRILLEQSQGLLQESTGVNLDEEAANLVQFEQAYNASAQVINVARQLFDT 598 Query: 475 LLEGV 479 L+ V Sbjct: 599 LIRAV 603 >gi|323703177|ref|ZP_08114830.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531836|gb|EGB21722.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 256 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 3/173 (1%) Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + +G N S+ + D + N Sbjct: 87 TLDLAIQGNGYFILTDGTNKYYTREGTFFIDINNNLINSDGLQVCDTSGKAITLQTTPVN 146 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 D + + + +A N L N + E S + Sbjct: 147 TISINDQGEIFVNGKTTSEGQVGIATCNNPAGLERVGNNL--YKESLASGTPTPGTARAA 204 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I+ Y V+L EE++ +I ++ Y + ++I +D +L+ L++ + Sbjct: 205 G-STINSGYLEMSNVDLTEEMTNMITTQRGYQANARVITVSDTLLEELIQLKR 256 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 50/235 (21%), Gaps = 13/235 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53 ++ + N + + NI N + + + S Sbjct: 1 MIRSLYSGVSGLKNHQIRMDVVGNNIANVNTNGFKASRVNFQDAISQTMRSASGTPAINP 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 +Q + ++A + N + + Sbjct: 61 SQIGTGVKVGGISINAGQGPLQNTGRTLDLAIQGNGYFILTDGTNKYYTREGTFFIDINN 120 Query: 114 YSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 N + I V + + + + E ++ I+ Sbjct: 121 NLINSDGLQVCDTSGKAITLQTTPVNTISINDQGEIFVNGKTTSEGQVGIATCNNPAGLE 180 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 V N+ K AS + + + + ++ T G Sbjct: 181 RVGNNLYKESLASGTPTPGTARAAGSTINS-GYLEMSNVDLTEEMTNMITTQRGY 234 >gi|169827129|ref|YP_001697287.1| flagellar basal-body rod protein flgG [Lysinibacillus sphaericus C3-41] gi|168991617|gb|ACA39157.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Lysinibacillus sphaericus C3-41] Length = 322 Score = 87.4 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 68/226 (30%), Gaps = 2/226 (0%) Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 DG + ++ A + ++ + + + + K + ++ Sbjct: 99 DGFFMVADANGAPDPDSGFIGEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 158 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D + D+ E + + G + ++ + Sbjct: 159 IVMEADDDGINPDDAPIASGDEGANLFDDDGVLDPEDGEVGPIRIPTTAKEISIGANGTI 218 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + K +A L + N + + S + + + + Sbjct: 219 EYVDLNGNRKWAGQLIMAKFPNAGGLAKVGGNY--YQQTANSGAAYAQVATVAGMGKVVP 276 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 277 GTVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 322 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 32/158 (20%), Gaps = 29/158 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57 +L + N + I NI N + + + + + + + T Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 60 Query: 58 ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKE---------MMSAD 93 + L + F + + + Sbjct: 61 GVNPQQVGLGSQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIGE 120 Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + +NN+ Y N L Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 158 >gi|284926913|gb|ADC29265.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni IA3902] Length = 852 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 36/352 (10%), Positives = 97/352 (27%), Gaps = 5/352 (1%) Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISN-LRRFLSELTVVNDAIKFKTASKHDAHDF 190 + + + D ++ + + I+ ++ V ++ H+ Sbjct: 503 DARYGVDYDGSGRFEVTGEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNI 562 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 K + + + G + E+ ++ S + Sbjct: 563 NFNVTAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGS 622 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 ++ V + + + + + + ++ + N Sbjct: 623 KHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYN 682 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 + + + KL G S + S + + Sbjct: 683 PKTLNFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRV 742 Query: 371 Y--PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 +++ + + +A + N L E N + S + + Sbjct: 743 DDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGG 800 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 801 RGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 31/435 (7%), Positives = 84/435 (19%), Gaps = 41/435 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + +N + D+ +++ + ++ + N + V Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 V F + E I++ + A + Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGAGAQANQGNNGVFD 282 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPTDTRDGTG 342 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 V +++ S + + N+KN+ + N + N +P N+ Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVTGNPADFDWNNIN 402 Query: 400 LLEYARNSIGWLEKN 414 L I Sbjct: 403 LRPAGNPIIRGNGSA 417 >gi|28211323|ref|NP_782267.1| flagellar hook protein flgE [Clostridium tetani E88] gi|28203763|gb|AAO36204.1| flagellar hook protein flgE [Clostridium tetani E88] Length = 365 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR------SDSHD 420 ++ + ++ +A + L + +N + Sbjct: 246 SVDKNGAINAVLANNEVVTIGQIGMADFKNSAGLYKEGKNLYSGTASSGDAIYRLGTDPT 305 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + I + V+L E+ + +I +++ + K+I D++LQ L+ + Sbjct: 306 NDKSNEKGYGDIIQGRLEMSNVDLAEQFTEMIVASRAFQANGKIITTGDEILQDLVNLKR 365 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 6/104 (5%), Positives = 19/104 (18%), Gaps = 20/104 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVT---- 51 +L + + I NI N + + + + Sbjct: 24 MLRSMFSGISGLKANQTKLDVIGNNIANVNTTAFKNQRIRFQDVLSQNLKFGTGASANVG 83 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL 86 V + + + + + + Sbjct: 84 GTNPSQVGLGVEVAGIDTVVSQGNMQPTGRNLDFAVDGDGYFVV 127 >gi|254470337|ref|ZP_05083741.1| flagellar hook-associated protein, putative [Pseudovibrio sp. JE062] gi|211960648|gb|EEA95844.1| flagellar hook-associated protein, putative [Pseudovibrio sp. JE062] Length = 519 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 127/311 (40%), Gaps = 2/311 (0%) Query: 90 MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 M +S ++ ++L S + + S + ++ AEE+ ++ NTSA++VQ++R Sbjct: 1 MFGKVGDPSSIPSLMNNFTNALTSLATDPSSQSAQEVAVNAAEELSRSINTSAKQVQEMR 60 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 DAD I ++S + L E+ + D+I + ++ + DQ D L+ ++E + + Sbjct: 61 RDADAAIADDVSEVNSILKEIESLEDSIVLERSAGRETAHLQDQMDRQLEALTEKMDVEI 120 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAV 267 N+ + + T GTTL+ ++ F + V NPI + V + Sbjct: 121 KQDNDGLLRISTKSGTTLYNDRASELQFTPQPTLGVGVVGNPIEVKSQSGAVMELTSFDL 180 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G I AL+++RD V+P Q++LDE+A + S S++ +++ A G+ Sbjct: 181 KSGSIGALVELRDDVLPETQSRLDELASQMALSLSQQTSEGAAADDGGAPPTATGLSVDT 240 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + L + + + A D+++ + Sbjct: 241 SNLNSSGDTIELEFEVNGESRKVTFVAVTDPGLLPLSSDATADSGDIVHGLVIPATSASL 300 Query: 388 FDPVAGINTNV 398 ++G Sbjct: 301 QSQISGALGAG 311 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 54/456 (11%), Positives = 136/456 (29%), Gaps = 18/456 (3%) Query: 38 RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 RRD I+ + V + E +++ D ++ S+ L + E ++ Sbjct: 60 RRDADAAIADDVSEVNSILKEIESLEDSIVLERSAGRETAHLQDQMDRQLEALTEKMDVE 119 Query: 98 --NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + S + + + ++ VV N + + + Sbjct: 120 IKQDNDGLLRISTKSGTTLYNDRASELQFTPQPTLGVGVVGNPIEVKSQSGAVMELTSFD 179 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ L + + + + A Q + + + Sbjct: 180 LKSGSIGALVELRDDVLPETQSRLDELASQMALSLSQQTSEGAAADDGGAPPTATGLSVD 239 Query: 216 DMVVYTSDGTTLFETVPR----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + +S T E + F + + S+ D + Sbjct: 240 TSNLNSSGDTIELEFEVNGESRKVTFVAVTDPGLLPLSSDATADSGDIVHGLVIPATSAS 299 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLI-GSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 +++ + +VL S + ++N + +ADG + Sbjct: 300 LQSQISGALGAGFDVSVDAGGELKVLAPTSPGTIEVTGLTAKNTRTVTVADGSEIPLFID 359 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 +G + + +V+K + + LAG D + + K+ + Sbjct: 360 SKGDGVPYTGALEDGGQKTGFAQRMTVNKAVIDDPSLLAGEADKQSSDRANLLKDRLTKT 419 Query: 391 VAGINTN-----------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + T+ + ++ + S + S+ V + +Y N+ Sbjct: 420 EFTFSPSSGVGAKNAPYVGTISNFGIETVVKQSQIASAATSAESNSKAVTSIAKNAYENS 479 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 V++ EEL L +++ +Y + +++ D+M TL Sbjct: 480 YKVDVDEELVKLTELQNAYAANARVLSAIDEMYDTL 515 >gi|325295417|ref|YP_004281931.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065865|gb|ADY73872.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 568 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 38/367 (10%), Positives = 98/367 (26%), Gaps = 17/367 (4%) Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 ++ ++V N V + N + +D K Sbjct: 214 DSLGNPHSLSYYFQKVDGNTWRVYSTVDGAIVPIKLKFADNTINDNLYSYIEFQFDDQGK 273 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T S + + D + K + +S + + + + F Sbjct: 274 LITDSLKAGYQVSYKYDTDITKSAGEFDVSGLTAA--------IGSLHIKKIQKNNDEFL 325 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + + + G + G+ + G I + + ++++ Sbjct: 326 VNFHDSGVVRTITVDVGGTTETHYIGNILDSNGNIVGEIDYTSGKITFDDASIEKITLDY 385 Query: 298 IGSFSEKDPIAGNSENV----PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + S + G +N N + + + ++ Sbjct: 386 VEPVSSGATLTGTVDNPVKCPITTSYDTMTSPDVNNKNTIDISSFWNDLKQVASDFIFYA 445 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + K ++ + Y + K+ VA L+ WL Sbjct: 446 QQDGNSKGDIMSVAVSEDGTIRATYTNGKVKDIARLAVATFKDKEMLVRKGN----WLYV 501 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + V + + V++ E LI +++Y + ++I D++LQ Sbjct: 502 PNVQTFTPVIMPGGVISKVRSGMLEMSNVDIASEFINLITAQRAYQANARVITTDDQILQ 561 Query: 474 TLLEGVK 480 + + Sbjct: 562 ETMNIKR 568 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/421 (9%), Positives = 104/421 (24%), Gaps = 33/421 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT- 51 +L F A N + I NI N + + + + + + V Sbjct: 1 MLQSFYTAFTGLNADKTWLSVISDNIANVNTVGFKKENAVFEDLLARSLTTFKNGAPVNQ 60 Query: 52 ----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K+ ++ + + F +K+ + + Sbjct: 61 EIGGGTFISTTVKDFSQGTFMNTNNPLDLALDGEGFFMVKD------ETGVTYYTRNGEF 114 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 R N+ + ++D + + + + SNL + Sbjct: 115 RLDANGDLINMLGMKVQGWMLDEQGNLAGAVGAINIPMDMPPKETTEIKFESPSNLDSRV 174 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + T + + ++ + + + I S ++ DG T Sbjct: 175 EDATKMENDKAEIGSNFSHIGFDPSEANSYSYINTVTIYDSLGNPHSLSYYFQKVDGNTW 234 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 D + + N + + + +KA Q+ Sbjct: 235 RVYSTVDGAIVPIKLKFADNTINDNLYSYIEFQFDDQGKLITDSLKAGYQVS-------- 286 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + S E D + + + + S + Sbjct: 287 ---YKYDTDITKSAGEFDVSGLTAAIGSLHIKKIQKNNDEFLVNFHDSGVVRTITVDVGG 343 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + G++ N+ Y + D+ + D V +++ TL N Sbjct: 344 TTETHYIGNI-LDSNGNIVGEIDYTSGKITFDDASIEKITLDYVEPVSSGATLTGTVDNP 402 Query: 408 I 408 + Sbjct: 403 V 403 >gi|316936123|ref|YP_004111105.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] gi|315603837|gb|ADU46372.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] Length = 422 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 49/484 (10%), Positives = 106/484 (21%), Gaps = 66/484 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A + N SQ A I NI N+ Y + + + S Sbjct: 1 MSLTGALSSAISALNAQSQSLAMISDNIANSQTVGYKTTSASFSQLVTAASGASTYSSGG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS----ADDHYNNSPTHYISKLRDSLESYSK 116 + + + + + + Y Sbjct: 61 VTVLARSNITTQGLLTTTTSSTDIGISGNGFFPVTTAVTGGTTLYTRGGSFTLDNSGYLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L D V + A + + L VND Sbjct: 121 NASGAYLLGWRTDADGNVAGGASADTMVPIDTSVAATSGSATTTTTVAANLPADAAVND- 179 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + +L++++ + Sbjct: 180 -------------------------------------------TFTTSMSLYDSLGTANS 196 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + T + F + + S+ + A+ D + ++ Sbjct: 197 MQITWTKTAENSWTATFANPTLASNTATATGTVSGSIAISFNSDGSLASTNPSPATISVT 256 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + I + G Sbjct: 257 GWTNGAADSVITMDLGTAGGTDGLTQYSSGATTPA----------------VDLTSIESD 300 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + + Y + PVA L S Sbjct: 301 GMAYGKLSSIAIGDDGTVSATYSNGKTTTIYKVPVATFAAADQLEAKDNGMYA--ATLAS 358 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + I + E S +I +Q+Y+ ++++I ++M TL+ Sbjct: 359 GTAVVQLSGTNGAGSIEGGVLEASTSDTNTEFSSMISAQQAYSAASQVISAVNEMYDTLI 418 Query: 477 EGVK 480 ++ Sbjct: 419 SAIR 422 >gi|34497159|ref|NP_901374.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34103016|gb|AAQ59379.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 393 Score = 87.0 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 2/210 (0%) Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G L Q ++ ++ + ++ P + + Sbjct: 186 GNKHNLTQYFCKSADSTITVHYQLDDKMLPATTDLKFDTAGKMTQPTAAVDLDLGTPAGA 245 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 ++ Q+ PS +R+ + +L ++I Y + + Sbjct: 246 NALKVAVDYSGTTQFAGEPSTVRNAANGYPPGARTGVSLGENGEVIVSYSNDQKQVVARL 305 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A L A + W E + S L + + S V++ EL Sbjct: 306 AIANFANQGALT--AASQTSWQESSASGPALLSPAGSNMAGKLVTSSLEQSNVDVTSELV 363 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ +++Y + K+I ++++Q L++ V Sbjct: 364 SLMTAQRNYQANTKVISTENQVMQALMQAV 393 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/392 (7%), Positives = 86/392 (21%), Gaps = 12/392 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F A + N + Q S+ NI N+ + + + + + Sbjct: 2 SFEIALSGINAVNNQLGSVSDNIANSGTYGFKSGRVTFASAYAGSQAMGVNANPN---SQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + R L + + + + + Y + + Sbjct: 59 NIGRNGGLVNTGRALDAAIDGRGFYVSRSVAGAVSYSRVGIFDTDKDGYLVDNYGGRVQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + I A +++ + + + + + Sbjct: 119 YAQSEGGALGAL-GDIQIPTGNIAAKPSDQLKYSGNMSAGWAVQTVPFDKGVSQSFNHST 177 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + + + + + + TT + + + + Sbjct: 178 VSPVYDSLGNKHNLTQYFCKSADSTITVHYQLDDKMLPATTDLKFDTAGKMTQPTAAVDL 237 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + V G+ G+ + + P + + + D Sbjct: 238 DLGTPAGANALKVAVDYSGTTQFAGEPSTVRNAANGYPPGARTGVSLGENGEVIVSYSND 297 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F G ++ S S P+ L GS L Sbjct: 298 QKQVVARLAIANFANQGALTAASQTSWQESS--------ASGPALLSPAGSNMAGKLVTS 349 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 D+ + + + + Sbjct: 350 SLEQSNVDVTSELVSLMTAQRNYQANTKVIST 381 >gi|94500241|ref|ZP_01306774.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] gi|94427540|gb|EAT12517.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] Length = 1240 Score = 87.0 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 43/443 (9%), Positives = 113/443 (25%), Gaps = 25/443 (5%) Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + S++ L + M + + ++ + + + + Sbjct: 801 IASIFNRQAGVTASASSELTIPLSGYNNPGNNMKVTLNGQELESTSLADMVEEINGLTTT 860 Query: 118 L-----------SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + I+ ++ + + + + + V + A+A + + Sbjct: 861 TLPGFSAELNENGDMIIKNSIGRDIKVEIDSPTVTDSLVIQGSANAGPVVLGGTATADTA 920 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + L + E ++ + + TT Sbjct: 921 AVVGGTIEFIFNEGYTISNPIPSVSGVFGALSEDEFEDYVLNVFDAQDQ-DTYNHATSTT 979 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 +++++ + + P + + L + F Sbjct: 980 IYDSLGNSHIMTQYFVREPLDPTRPNEENVWAMYVQIDGKDVGDPDSTLPFPDNLEPTQF 1039 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-----------KDLDNKLCQGIS 335 + +L S N + V G D Sbjct: 1040 RQELFFNPDGTFDQQSTGPIFVTNWDPVDEEGSPTGALKSQNVLEGGLPLNDPPTNSNFE 1099 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + Q+ S S + + + + + + +A Sbjct: 1100 ILLEDSSQFGSPFSVSEVSQNGYTTGRLTGLEIDADGFIFARFTNGQAEVLGQVALASFK 1159 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L+ W E S + + F ++ S V+L EEL LI + Sbjct: 1160 NPEGLIPLGD--TAWGESFESGTPTVGSPRTGTFGNLRSSALEDSNVDLSEELVGLIIAQ 1217 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +++ S K I +D + QT+++ Sbjct: 1218 RNFQASAKTIETSDTVTQTIIQL 1240 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/425 (9%), Positives = 85/425 (20%), Gaps = 26/425 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVTV 52 FN + AS N+ NA + V V Sbjct: 2 AFNIGLSGIRAASTDLEVTGNNVANASTVGFKESRAEFADVYTTTILGTGSKPVGSGVLV 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + +A+ F L + + Sbjct: 62 DNVRQ---EFSQGNISGTENALDMAIDGNGFFILNDN-------GTESYTRAGIFGLDKD 111 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + S L + V + + I+ L + + Sbjct: 112 GFVVANSGARLQGYEANGDGVVNGVLGDVQIRIGNQPPSLTSRVSSIINVDASELVKQEL 171 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTLFETV 231 + A D +L +++ + ++ V S + Sbjct: 172 GSRLTSDGLAVAAPDAGIADSTSTVLSTVAQPTTAGNRTALTFDNGGVDLSAQANVVAQT 231 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 ++ + T G V + + + AL D+V + ++ Sbjct: 232 DPGAFGVTIDPFDGTGAQVINIPAGTVTIGATPTQHLQNILNALQSEIDAVFGNNEFEVS 291 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 L + G+ N + + Sbjct: 292 TNQSPLTAPLVAGTNLVIERAGFDATTGTSFSVTAPTGAWNGLFGDPAANTNVTAGVAGN 351 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 R S + +++ G F + T+ IG Sbjct: 352 RLF-VGSNPLTADFRSIPGTSTTTRTTATPPLAMTGFIAGDHAQLSSTIAN-GGTVIGDF 409 Query: 412 EKNRS 416 S Sbjct: 410 GGANS 414 >gi|34558065|ref|NP_907880.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483783|emb|CAE10780.1| FLAGELLAR HOOK PROTEIN [Wolinella succinogenes] Length = 716 Score = 86.6 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 41/414 (9%), Positives = 103/414 (24%), Gaps = 5/414 (1%) Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + + Q + + N + + +++ T Sbjct: 306 SETGVEAFATGGQLRLVNDNSLDGNASKKNVIITASGGALANFTAADNSITAFRYAYTTA 365 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 +A+ + +++ + I+ + + +V K + Sbjct: 366 SDADS-TSRLFRTTEDLRALLQQDANNIKHGGGYVDSTGTNASVKVTINKTGMFEILNQD 424 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 D L +S + + + L E + M + + Sbjct: 425 DGDTTTGNLSLTVSSYYDTNVTSNVLFKSAMKGLNTGILVEGGSSTTSASLMAAKHTATT 484 Query: 249 SNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + + + + + V + + + + Sbjct: 485 DIVDSLGNKHTLTVTFRKVGPQEWSFSLHVPEPATFVNGSGERPNYFEGGRVTFGEDGGL 544 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 N + + L G+S T + + + + Sbjct: 545 TGMNPPTIQFNPKSGASSPQRIDLDFGVSGTFQGLTSTDKESATGNIYQNGYQSGVLEDW 604 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 LI + + + +A N L N S + Sbjct: 605 RFDSNGVLIGEFSNGKDLALAQVAIASFTNNGGLQAEGSNLFSQ--TANSGEPVVGTAGS 662 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS S V+L L+ LI V++ + ++K + +D++L TLL+ + Sbjct: 663 GGRGKISPSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 716 Score = 67.4 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/412 (7%), Positives = 84/412 (20%), Gaps = 41/412 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + NI N + + + V Sbjct: 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRANFSDMLSQVNRIATSPYGGLG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + S K + ++ + F + + Sbjct: 61 GQNDYSIGLGTSINSTTKIFGQGSIQDTTNKMDLAIGGDGFFIVSGN-----GGRTNAYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 N + I+ +DA + Sbjct: 116 RDGAFGFDAAGNMVNNAGYIVQGWT-----------RDLNSGSTSCYSDALYNVVDTTVP 164 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + E +V A + D D L + + +++ + Y S Sbjct: 165 ISGIKIEPKMVIPAKATTQVNLDANLTAGDTTDKLGCMYA--LDSTSVTAADGIAARYDS 222 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 G + + F + SE +++ S + + + + Sbjct: 223 AGNKIQMAEDMGVLFNASGNALKLSEGQGVWVS---YSQATATQAVAVATTGTITLNGTT 279 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + L+ + + + + DN L S+ + Sbjct: 280 ITFTNDSTISGVSSLVAAQNAINAKKSETGVEAFATGGQLRLVNDNSLDGNASKKNVIIT 339 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + F + + + + + + A Sbjct: 340 ASGGALANFTAADNSITAFRYAYTTASDADSTSRLFRTTEDLRALLQQDANN 391 >gi|255323598|ref|ZP_05364728.1| flagellar hook protein FlgE [Campylobacter showae RM3277] gi|255299312|gb|EET78599.1| flagellar hook protein FlgE [Campylobacter showae RM3277] Length = 756 Score = 86.6 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 47/424 (11%), Positives = 97/424 (22%), Gaps = 14/424 (3%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L + + + T + Y N + Sbjct: 338 NKLVLTNRNNLGTTANMKNIKMTVNTGGVPADDTGLT---DIKIITAYQYVYNKTHVSAT 394 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 D E V +QK + ++ + + ++ Sbjct: 395 HAYDDTKEREVTTTEDLREAMQKDAREFTNYDHVQNPAVTGTNPLPAANQNNGAQVIVNE 454 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-----TLFETVPRDINFEK 239 H + F + + ++ + T N V + +L + Sbjct: 455 HGQYQFKNPSAAGAKDMNIAVTGLTNATKNVTENVKFTASMAPISGSLSAGGATRVTDSL 514 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + +S + + V + R ++ Sbjct: 515 NMAAHSSSTDLYDSLGTKHNVKMDFIKRGYTENGGTEWTMVIQVAEPNSINTVEPRNVVT 574 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ----YRSNPSFLRDGG 355 + +P + P + +N S Sbjct: 575 GYVRFNPDGSLATYSPASITFGAQNGSAIGQNIELKFGTTQTTDGLTSTDNNSSTADISQ 634 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N + L+ + + + VA N L N Sbjct: 635 DGYASGELNGIRIDQSGTLVGSFTNGRSLGLAQVGVAKFANNQGLAGEGGNLFSR--TAN 692 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + IS S V+L L+ LI V++ + ++K I +D+ML TL Sbjct: 693 SGDPIIGAAQTAGRGKISASSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTL 752 Query: 476 LEGV 479 L+ Sbjct: 753 LQLK 756 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 31/421 (7%), Positives = 72/421 (17%), Gaps = 37/421 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ NI N + Y Sbjct: 1 MMRSLWSGVTGLQAHQIAMDVEGNNIANVNTVGYKYNRANFDDLIYQTSRIATAPQNQHG 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + L F M + D + Sbjct: 61 GVNNMEVGLGTQINSTTRI---FKQGSLQTTDKQTDIALQGDGFF-----MVSSDGGKTT 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 E + +I+ + D + + Sbjct: 113 YYTRNGDFSRDSEGNFVDNGGNIVQGWMRDEETGEIDPTRPIGDIKIPVGLTVPARATTN 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 I+ S V N I +H + D+ + + Sbjct: 173 IALKGNLDSGNDVGNKKIPIYKLDQH-----HNGVDLDNDGTIAGSEVHDENNVGANRFY 227 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-KIKALLQI 278 +G D+ ++ + + G + ++ A G + + Sbjct: 228 VNKNGEQRMTERGADLGVLFNSNGDAYNLRDAQGTGGQGIWASYADAKTDGLTVAGVGAD 287 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 P + + + + G N ++ + Sbjct: 288 GSFAAPGKKLNITLNGKNITGENILTIGQLAGIINGKYSETGVEASVVNGNKLVLTNRNN 347 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N + G V + + +D Sbjct: 348 LGTTANMKNIKMTVNTGGVPADDTGLTDIKIITAYQYVYNKTHVSATHAYDDTKEREVTT 407 Query: 399 T 399 T Sbjct: 408 T 408 >gi|138894748|ref|YP_001125201.1| flagellar basal body rod protein FlgG [Geobacillus thermodenitrificans NG80-2] gi|134266261|gb|ABO66456.1| Flagellar hook protein [Geobacillus thermodenitrificans NG80-2] Length = 264 Score = 86.6 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 2/207 (0%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 R + +D + + + S + + + Sbjct: 60 GGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGN 119 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L DGG + ++ ++ + +A Sbjct: 120 FYLDSEGYIVNANGLYLLGDGGPLQIDPNAKSLSIGADGNVTIVDDTGNLQLVGTIQLAK 179 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L + N + E S + + + V+L EE + +I Sbjct: 180 FANPDGLEKEGNNL--FRETVNSGDPQIGVPGANGTGKLVSGALEMSNVDLAEEFTEMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I +D++LQ L+ K Sbjct: 238 AQRGFQANTRIITTSDEILQELVNLKK 264 Score = 63.1 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 34/145 (23%), Gaps = 25/145 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 +L N + I NI N + + + T+ Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60 Query: 45 -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 +P V + +Q + + L + F + + + NN Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDA-----NGNNQMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127 E Y N + L Sbjct: 116 RAGNFYLDSEGYIVNANGLYLLGDG 140 >gi|239826621|ref|YP_002949245.1| flagellar basal body rod protein FlgG [Geobacillus sp. WCH70] gi|239806914|gb|ACS23979.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 264 Score = 86.6 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%) Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 N L G + G +N+ + K+ Sbjct: 115 TRAGNFYLDKDGNIVNADGLYLLGIGNKLINIPSSAESFSIGSDGTVNYIENGSLKSAGQ 174 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N N L + N + + S + I V+L EE Sbjct: 175 IQLAKFNNNDGLEKAGDNL--FRQTANSGTATTGAPGANGTGTIVAGTLEMSNVDLAEEF 232 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I ++ + + ++I +D++LQ L+ K Sbjct: 233 TEMIVAQRGFQANTRIITTSDEILQELVNLKK 264 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 28/145 (19%), Gaps = 25/145 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L N + I NI N + + + T+ T + Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + + L + F + D + N Sbjct: 61 GVNPKQVGLGSQLAAIDTVHTQGSLQTTGRPLDLAISGDGFF-----VLGDKNGGNHVYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127 + N L Sbjct: 116 RAGNFYLDKDGNIVNADGLYLLGIG 140 >gi|118475525|ref|YP_892884.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] gi|118414751|gb|ABK83171.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] Length = 911 Score = 86.6 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 62/200 (31%), Gaps = 2/200 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ + + S+ + + N+ + ++ G Sbjct: 714 GKINTETGEVANVIAGTVRFKSDGSLLGYSPSNLTFTANNGSAPGQNIEINFGKIGDYNG 773 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + N + +I + + + +A N L Sbjct: 774 LRSNDNTSTTDNIVQDGYTAGTLNELRVDESGTIIGAFTNGRSFGLAQVALAKFTNNEGL 833 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N +++ S + + I+ S V+L L+ LI V++ Y Sbjct: 834 ESDGGNV--FVQTANSGAPVIGSAQTAGRGKINASSLEMSNVDLSRSLTQLIVVQRGYQA 891 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K I D+ML TLL+ + Sbjct: 892 NSKTITTGDQMLNTLLQLKQ 911 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 35/464 (7%), Positives = 93/464 (20%), Gaps = 32/464 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ NI N + + Sbjct: 1 MMRALWAGVTGLQAHQIAMDVEGDNIANVNTVGFKYSRASFADLFSQTAKVATAPQGDLG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 S K + F + + D Sbjct: 61 GKNSMQIGLGTQINSVTKIFKQGSVQTTDKNTDLAIQGDGFFVV-----SPDGGKTYKYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + I+ + + + + E++ Sbjct: 116 RNGDFSRDSLGNFVDKNGYIVQGWLRNEDTGTIDPTGPVKNIQIEPGLSTPARATTEVAL 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + S ++ + + + D + +++ V + + Sbjct: 176 IGNLNSGSSIGTKSSPIYSLDSKNGWLDKNGNGIWEDGETKNENDLSKNEYYVDKDKQVK 235 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 V + + V + + N S VP G K + I Sbjct: 236 VKETG---VDLGVLFNATGDAFNLREGQGMWVSYADAKASFSGELNPVVPAGGHKLNIAI 292 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 +P E I + ++K + + N + + + + I T Sbjct: 293 NGIEIPSTSVTTVEDIVNKINTITDKTGVTASLINGNQIQLVNQNNLGSTDTMKNIKITK 352 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + + + N A + + A N Sbjct: 353 LSGDTTSMTSTNVITAYKYTYTATATGGNHAYNDSTARKVHTTEDLRKAMQTDAREYVNY 412 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ + + + S + ++ + N + V Sbjct: 413 QGENVSQAASAAISVANAVSAAVAANPAAPLADLTTAAINALNV 456 >gi|261419427|ref|YP_003253109.1| flagellar basal body rod protein FlgG [Geobacillus sp. Y412MC61] gi|319766242|ref|YP_004131743.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261375884|gb|ACX78627.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317111108|gb|ADU93600.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 265 Score = 86.6 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + +A N L + N + E S + Sbjct: 154 SIGADGKVTIVDASGTLSTIGTIQLAKFANNDGLEKAGNNL--FRETTNSGTPTTGAPGA 211 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EE + +I ++ + + ++I +D++LQ L+ K Sbjct: 212 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 265 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 25/154 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 +L N + I NI N + + + T+ Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGRG 60 Query: 44 TISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 +P+ V + +Q + + L + F + + NN Sbjct: 61 GTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDA-----SGNNRMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136 + Y N+ L + Sbjct: 116 RAGNFYLDSQGYIVNVDGQYLLGVGNSRLQVPTD 149 >gi|196247630|ref|ZP_03146332.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196212414|gb|EDY07171.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 264 Score = 86.2 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 2/207 (0%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 R + +D + + + S + + + Sbjct: 60 GGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGN 119 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L DGG + ++ ++ + +A Sbjct: 120 FYLDSEGYIVNANGLYLLGDGGPLKIDSNAKSLSIGADGNVTIVDDTGNLQLVGTIQLAK 179 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L + N + E S + + + V+L EE + +I Sbjct: 180 FANPDGLEKEGNNL--FRETVNSGDPQIGVPGANGTGKLVSGALEMSNVDLAEEFTEMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + ++I +D++LQ L+ K Sbjct: 238 AQRGFQANTRIITTSDEILQELVNLKK 264 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 34/145 (23%), Gaps = 25/145 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 +L N + I NI N + + + T+ Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60 Query: 45 -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 +P V + +Q + + L + F + + + NN Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDA-----NGNNQMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127 E Y N + L Sbjct: 116 RAGNFYLDSEGYIVNANGLYLLGDG 140 >gi|315926654|gb|EFV06034.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 594 Score = 86.2 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 45/395 (11%), Positives = 113/395 (28%), Gaps = 9/395 (2%) Query: 93 DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + N+P + + ++ + + + + + + Sbjct: 202 NQANMNTPGTPENNYQLAMSGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFGVT 261 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 D + + + N A + + + ++ +ST Sbjct: 262 GEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 321 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T + + S + + + V + S G Sbjct: 322 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 381 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + IR + +++G+ + + S N L + N+ Sbjct: 382 GNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQQ 441 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKN 385 + T N S+ S G + + + + +++ + + Sbjct: 442 IKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFA 501 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 +A + N L E N + S + + + S V+L Sbjct: 502 VAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLS 559 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 560 RSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 594 >gi|254496894|ref|ZP_05109741.1| flagellar hook-associated protein FlgK [Legionella drancourtii LLAP12] gi|254353879|gb|EET12567.1| flagellar hook-associated protein FlgK [Legionella drancourtii LLAP12] Length = 486 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 54/401 (13%), Positives = 128/401 (31%), Gaps = 22/401 (5%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + S+L + +++ KT + T + Q ++ Sbjct: 91 GSGAGQLNISSQLTTGKIGGLMDYENNVIAKTSQTIGLMAIGLSQTFNAQNQLGMDLNNQ 150 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + ++ +L +++ ++ D+ ++S+ + N Sbjct: 151 LGQNYFTDYNTPAQQLLRA----ISASSNTGTGVLSVNITDLSQVQLSDYQLVVNDAATN 206 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 ++ SDGT++ + + + + I +D + +N+ S A Sbjct: 207 QVRLIRESDGTSMTLNWASNP--PAPPAGQIVVDGMTITVDNIANLANEDSFTLIPTRGA 264 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKD 325 + L R + + +G S+ FI+ + Sbjct: 265 ARDFGMLISDPNLMALAAPVRTMASMSNSGSGQIALGTVFNTSGVSDQYSIDFISPTQFN 324 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + N + D + S + + G + F N Sbjct: 325 VVDVTTGTTVSGPLPFTPNTDNVVQIPDATNPSYSIVLSGMPNTGDQFTAEYNQGGFGDN 384 Query: 386 FIFDPVAGI-------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 +AGI N N TL + + + + + + + +V++ + + Sbjct: 385 RNGLLLAGIQQSQLFDNGNETLFDCYSDLLSNVGSQTNQAQNRAAAFEVLYKQAVDFQES 444 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVNL EE + L++ EQ+Y + KL+ +++M+ L E + Sbjct: 445 KSGVNLDEEGANLLRFEQAYAAAGKLMEVSNQMMHVLFEMM 485 >gi|289670507|ref|ZP_06491582.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 262 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 70/254 (27%), Gaps = 8/254 (3%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 ++ F + T + + D S + G + V Sbjct: 10 STVNLAFTLPGNATAPTVTPFDPADDKTYSHSTGGINVYDSLGVSHVQTSYFVKTANPNE 69 Query: 291 DEMARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + + + + G+ D + + + QY Sbjct: 70 WQVHNYVDGAAVGAPTTLQFSDTGALTTPANGIIAMDPFTPSTGAGVLNMQLNVSGSTQY 129 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + N ++ + Y + +K ++ L Sbjct: 130 GEAFALRDTRQDGYASGKLNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N W E S + + + V+L E+L +I ++++ ++++ Sbjct: 190 NNM--WAESYTSGAARTGAPNTSDLGQVESGSLEASTVDLTEQLVNMIVAQRNFQANSQM 247 Query: 465 IMFTDKMLQTLLEG 478 I D++ QT++ Sbjct: 248 ISTQDQVTQTIINI 261 >gi|292669794|ref|ZP_06603220.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541] gi|292648591|gb|EFF66563.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541] Length = 680 Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 45/418 (10%), Positives = 124/418 (29%), Gaps = 12/418 (2%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + G L A ++ + N + S + +L + + Sbjct: 275 INGSATTVINRTGATALTSGTYAFGDVFNISGKITNVVSSPPSDVVLTLGTDNNITPGTA 334 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + V +T +++ + + + ++ V T Sbjct: 335 VTIKVPKPNSFTYSVNDTYTGQLKITKVVGNTGSTVTTADGNS-----ATVGATPVSVTN 389 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D ++ I+ + + +++ T GT++ V + + ++ Sbjct: 390 AATPYTHTGSATDGTIKSITRESTYQHAGKTVSSVLLNTKSGTSIDGLVG--KTYAQNDT 447 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + D + + KG+ + + + + E Sbjct: 448 FYPSVATTIAVYDSLGAKHSVPVVFTKGENNKWVLSLGTGGDTY--TITEADGTTTTVAL 505 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K + +S A N + S + + Sbjct: 506 TKTDLTFDSTGAYTGGTASLNLTYTNGAAPQQVSLNLGAITQYAGTSTIAADSDGNAAGT 565 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + Y + + +A N L + N + E N S + + Sbjct: 566 LASVDIDSSGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTIS 623 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S + ++ S V++ ++ S +I ++ + ++K+I +D+ML+TL+ + Sbjct: 624 GASDIG-TELTTSALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 680 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 34/447 (7%), Positives = 82/447 (18%), Gaps = 23/447 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ + + I NI N + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGAASPNGNIG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +++ + S + + + + Sbjct: 61 GVNPKQVGLGMSVASTDLIYTNGSVQQTGKNTDIAISRGDGLFVVKRGEQQFYTRNGAFS 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165 E S + + + N + + + + K NL Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLAVGGDNTTKIRIPAGKSMEATSTVSASYTKNLNA 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 V N +K+ + + L + + V ++ Sbjct: 181 STPGYEVANVLVKYADGTSGTTTSYSATETGKLVLTMDNGRKIYLGSAAPAQTVGSAPTG 240 Query: 226 TLFETVPRDINFEKMNS------YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 L+ + +I + + + S+P I+G + + Sbjct: 241 ALYSSTVSNITAKVGGTVDLDLAMDANNPSSPKEINGSATTVINRTGATALTSGTYAFGD 300 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + D V I Sbjct: 301 VFNISGKITNVVSSPPSDVVLTLGTDNNITPGTAVTIKVPKPNSFTYSVNDTYTGQLKIT 360 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + DG S + A P I + T Sbjct: 361 KVVGNTGSTVTTADGNSATVGATPVSVTNAATPYTHTGSATDGTIKSITRESTYQHAGKT 420 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + N+ + Sbjct: 421 VSSVLLNTKSGTSIDGLVGKTYAQNDT 447 >gi|258622488|ref|ZP_05717510.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|262173354|ref|ZP_06041031.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] gi|258585188|gb|EEW09915.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|261890712|gb|EEY36699.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] Length = 398 Score = 85.9 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 36/389 (9%), Positives = 92/389 (23%), Gaps = 10/389 (2%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + NN + S ++ + G + + + + + + Sbjct: 18 NTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVASISQNFDKNGSITGTGRAMDMAI 77 Query: 153 DKEIELEISNLRRFL--SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + L + V N + A D + +S +G Sbjct: 78 NGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQGYSVDTNGELLSGSVG---- 133 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T + + +P + S G Sbjct: 134 --DIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSFNSSYTTKVYDSLG 191 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + Q ++ + + Sbjct: 192 NAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKTDGTLESPKGSYKVSFPAAGAE 251 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I ++ + Q+ + + + + + Y + ++ Sbjct: 252 PLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYATYDNGESQRQGQVV 311 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A L + N W + S + + + ++ V+L EL Sbjct: 312 LANFADPQGLSKV--NDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEGSNVDLTSELVS 369 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ +++Y + K I DK+ Q L + Sbjct: 370 LMTAQRNYQANAKTISTGDKLTQALFNAI 398 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/400 (9%), Positives = 87/400 (21%), Gaps = 22/400 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + +++ +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D ++ + L Sbjct: 59 NFDKNGSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D E++ + ++N + ++ Sbjct: 119 YSVDTNGELLSGSVGDIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N + V TVP + Sbjct: 179 NSSYTTKVYDSLGNAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKTDGTLESPK 238 Query: 246 TSESNPIFIDGV-------------------VVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 S G VS+N + G++ + + +V Sbjct: 239 GSYKVSFPAAGAEPLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYAT 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + + DP + N + + S Sbjct: 299 YDNGESQRQGQVVLANFADPQGLSKVNDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEG 358 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + L N + A + + Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398 >gi|56419762|ref|YP_147080.1| flagellar basal body rod protein FlgG [Geobacillus kaustophilus HTA426] gi|56379604|dbj|BAD75512.1| flagellar hook protein [Geobacillus kaustophilus HTA426] Length = 263 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + +A N L + N + E S + Sbjct: 152 SIGADGKVTIVDASGTLSTIGTIQLAKFANNDGLEKAGNNL--FRETTNSGTPTTGAPGA 209 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EE + +I ++ + + ++I +D++LQ L+ K Sbjct: 210 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 263 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 32/152 (21%), Gaps = 27/152 (17%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------------TI 45 N + I NI N + + + T+ Sbjct: 1 MYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGT 60 Query: 46 SPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 +P+ V + +Q + + L + F + + NN Sbjct: 61 NPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDA-----SGNNRMYTRA 115 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136 + Y N L + Sbjct: 116 GNFYLDSQGYIVNADGQYLLGVGNSRLQIPTD 147 >gi|331006033|ref|ZP_08329375.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989] gi|330420162|gb|EGG94486.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989] Length = 877 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 41/443 (9%), Positives = 117/443 (26%), Gaps = 11/443 (2%) Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + V + N D + S+ G F + +++ + Y Sbjct: 436 TTTGASSTVAITAVGANANDLGIATGSAVAGTDADAYDFSITVDGVASAADISLPVASYA 495 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S + + ++ + + + + S + A ++ Sbjct: 496 SYTAMAAALETAINADTNISGVSVTFDTDHFVITSVSTGTTSTVALTAVGADANDLGIAG 555 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 S T + + D L + + ++ + S Sbjct: 556 ATSSAGVSDITVGGIITLELDEGYSLTDNSGTPLFDNAPVEFVNNSFDPTSPETYNHSTS 615 Query: 225 TTLFETVPRDIN---------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 T+++++ ++ + T + + + P A Sbjct: 616 VTVYDSLGNSHVMQQYFIKQPYDPSDPATFANHWEMAVQIDGQNVGDPVISAPTTATVAT 675 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + L + + + +++ + + + + + Sbjct: 676 YDLFFTANGTLNTALSDSLLISNWTPIDENGNEIGALGPLNVASGGSVPVAEPAINSNFE 735 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ++ + Q S+ + S ++ + Y + N+ +A Sbjct: 736 ISMDDSTQVGSDFEVRTLDQNGSTTGRLVGIDVDDSGIIFARYTNGENQVLAQVALADFA 795 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L W++ S + I V+L E+L LI + Sbjct: 796 NVQGLQS--DGDTAWVQTFESGEPIIGGPGTASLGLIQSGALEDSNVDLSEQLVNLIIAQ 853 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +++ + K I D + QT++ Sbjct: 854 RNFQANAKTIETADTITQTIINL 876 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 91/393 (23%), Gaps = 4/393 (1%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---QRSENKNMF 63 FN A + A+ NI NA + T + + Q + Sbjct: 3 FNVALSGIRAANSDLRVTGNNIANASTTGFKESRTEFGDIYSTSALGSGLNQPGSGVRVQ 62 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D I + E + N ++ L Sbjct: 63 DIAQQFGQGNISFTENSLDLSISGSGFFVTSFAGDQSFTRAGTFGLDQEGFIVNNTDARL 122 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 D++ + + I+ A +++ ++ R T + + Sbjct: 123 QGFDADSSGNISGLIGDIQIQTTNIQPTATTGVDIALNVDSREPVIQTTGTRYLSSGGTA 182 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + + + Q + +T +N V + + + S Sbjct: 183 AANENGYTAQSLDFTNPSGATVTFNTSASDNTFDTVSSLNSLSGVTATSTATATLSTWSA 242 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + N + +S + + + A + + D + + Sbjct: 243 GLNVTINGASLTNTGISQATATEITNLPGLTATYDAGAGTIAVVSTIGDLVFGAAGSGGA 302 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ S +P DG DL +S T + + Sbjct: 303 DQLLTVTGSSGLPQTLEFDGAGDLVAAGNLAVSGTFTGIAATAALNQSSSGRFIAGASTI 362 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + AG D + + N Sbjct: 363 PLDTSGAGPTDYDFSITIDGLASNADISLPASN 395 >gi|224825777|ref|ZP_03698881.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] gi|224602001|gb|EEG08180.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] Length = 399 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 77/250 (30%), Gaps = 2/250 (0%) Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +++ T ++P +G VS+ S K + + Sbjct: 152 QYVGNLSSGWTTPATAFDPADPTTFNGSSVSTVYDSLGEKHTLTQYFVKNGTNDVTVHFG 211 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD + A S + A + + Q+ + + Sbjct: 212 LDGSLLADTADLAFDSNGALTSSALASGAAALALGTPTGAAALAVKLDYTGTTQFAGDTT 271 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + G+ +L D++ Y + + +A L+ + Sbjct: 272 TTVNSGNGYASGALTGVSLQDNGDILATYSNGQKQAVGTIALANFPNEDGLVPVSA--TS 329 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + L + +S V++ EL L+ +++Y + K+I Sbjct: 330 WVDSPASGTALLSAPGSGLAGTLSAGSLEQSNVDMTAELVNLMSAQRNYQANTKVISTEG 389 Query: 470 KMLQTLLEGV 479 +++Q L++ V Sbjct: 390 QVIQALMQAV 399 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 36/394 (9%), Positives = 86/394 (21%), Gaps = 6/394 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A + N + Q SI NI N+ + + + + + Sbjct: 2 SLEIALSGINAVNSQLGSISNNIANSGTYGFKSSRANFSATYAGTQATGVEVASN---TQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + R L + + D+ + + + + Sbjct: 59 SIGRSGGTVTTGRALDAAIQGRGFFVTRDNAGSVAYTRVGIFNTDKDGVLVD--SFGRHV 116 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + ++ + + + S T A + Sbjct: 117 QGYAAVSAASGGARGALGDITVPTGQIAAKASDTLQYVGNLSSGWTTPATAFDPADPTTF 176 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D L +K + N+ V + DG+ L +T + + + Sbjct: 177 NGSSVSTVYDSLGEKH-TLTQYFVKNGTNDVTVHFGLDGSLLADTADLAFDSNGALTSSA 235 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + G + + + N A + D Sbjct: 236 LASGAAALALGTPTGAAALAVKLDYTGTTQFAGDTTTTVNSGNGYASGALTGVSLQDNGD 295 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 +A S + + N+ S + L GS L Sbjct: 296 ILATYSNGQKQAVGTIALANFPNEDGLVPVSATSWVDSPASGTALLSAPGSGLAGTLSAG 355 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 D+ + + + + + Sbjct: 356 SLEQSNVDMTAELVNLMSAQRNYQANTKVISTEG 389 >gi|15615012|ref|NP_243315.1| flagellar basal body rod protein FlgG [Bacillus halodurans C-125] gi|10175069|dbj|BAB06168.1| flagellar hook protein [Bacillus halodurans C-125] Length = 263 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 2/129 (1%) Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 +G ++ ++ + D + + L + N +L Sbjct: 137 TNGNPITVPTTAQSFSIGQDGTVTYIDEDGDLQEAGMVRLVNFANPEGLAKAGANL--YL 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + I V+L EE + +I ++ + + ++I +D++ Sbjct: 195 VSANSGAPLFTSAGNGGTGDIIAGTLEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEI 254 Query: 472 LQTLLEGVK 480 LQ L+ + Sbjct: 255 LQELVNLKR 263 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 15/202 (7%), Positives = 37/202 (18%), Gaps = 19/202 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSE 58 +L + N + I NI N + Y + T T Sbjct: 1 MLRSMYSGISGMRNFQTKLDVIGNNIANVNTFGYKKGRTTFQDMVSQQLAGATAPGANRG 60 Query: 59 NK---------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ + + Sbjct: 61 GVNPRQVGLGMQLASIDNVHTQGSLQNTNRELDLGISGDGFFQVQDGDTFYYTRSGNFYF 120 Query: 110 SLESYSKNLSEDILGK------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + N L TV A+ + + + + + + ++ Sbjct: 121 DQQGTIVNAQGLRLMDTNGNPITVPTTAQSFSIGQDGTVTYIDEDGDLQEAGMVRLVNFA 180 Query: 164 RRFLSELTVVNDAIKFKTASKH 185 N + + Sbjct: 181 NPEGLAKAGANLYLVSANSGAP 202 >gi|294500931|ref|YP_003564631.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] gi|294350868|gb|ADE71197.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] Length = 264 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 2/222 (0%) Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 VS A G + + + + +D + + + S + + Sbjct: 45 VSQQVAGATAPGANRGGVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVV 104 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + + + G + A I Sbjct: 105 NDGKSDYYTRAGNFYLDSSGNLVTGDGLYVQKTGGGNINIPSTSKSYSIGADGKVNIIDA 164 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + N +A N L + N S + + + S Sbjct: 165 NGNITPNTPTIELAKFANNEGLEKAGGNLFAK--SVNSGNPLVGNPGASGTGTLVSSALE 222 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 223 MSNVDLSEEFTDMIVAQRGFQANTRIITTSDEILQELVNLKR 264 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 14/175 (8%), Positives = 35/175 (20%), Gaps = 14/175 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53 +L + N + + NI N + Y + T Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRD 109 ++ + K+ + + + + Sbjct: 61 GVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVNDGKSDYYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF-NTSAREVQKIRADADKEIELEISNL 163 + KT N + + + + DA+ I + Sbjct: 121 DSSGNLVTGDGLYVQKTGGGNINIPSTSKSYSIGADGKVNIIDANGNITPNTPTI 175 >gi|256830199|ref|YP_003158927.1| hypothetical protein Dbac_2432 [Desulfomicrobium baculatum DSM 4028] gi|256579375|gb|ACU90511.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 562 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 46/429 (10%), Positives = 100/429 (23%), Gaps = 14/429 (3%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM----SADDHYNNSPTHYISKLRDSLESYSKNL 118 + A Q + + + S I + S E S + Sbjct: 137 ANTSAAASGDTTAQATTGVQILGVPQDVKLENFQSPPQATSRVDLILNVDSSSEDKSVSP 196 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-------ISNLRRFLSELT 171 ++ +A S I+ + ++N+ + Sbjct: 197 TDPFTALFDTYDATAAEPIGEASYAYQTTIKVYDENGSSHNMTVYMDPVANVEVTGAAAG 256 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 D DF D + +M +T + T + Sbjct: 257 KRYWEYIIAVPPGEDNRDFWGAGDEKRGILMSGTLTFNAAGELENMSAFTVNDLTADPEL 316 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + ++ G K + + Sbjct: 317 PASWVPANFSQNGYPICTANFLGAANGSTTGSGILAESENTKNIEINFGVRNKTSSWEPG 376 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + + G N + + + Sbjct: 377 PAIPPAAATGQDNLGDYPTIDTSGATPVLVGSLGAINGFASTEISALSSTNYSTGSTTIF 436 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + FL N+ + + Y + +A N N L N Sbjct: 437 QAQDGYTAGFLQNIS-VDRDGVITGRYSNGQVLQLFAVTLATFNNNYALYREGGNLFS-- 493 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + I+ + V+L E +I E+ + ++K I D+M Sbjct: 494 ETRSSGPPITGLANTGGKGSIASNSLEQSNVDLATEFVKMITTEKGFQANSKTITTVDQM 553 Query: 472 LQTLLEGVK 480 L L++ + Sbjct: 554 LTVLIQLKR 562 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 104/439 (23%), Gaps = 21/439 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49 M L A + + I NI N + S + Sbjct: 1 MGLSASLYSGTSGLKAHGEDMTVIGNNISNVSTIGFKGSRMYFEDALSQQITTASGSGQV 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V+ + + L + + A F M + + R Sbjct: 61 GRGVSVGTVMGDFSQGSLESTTEATDLAIGGNGFF-----MVSPAGQEVNYYTRAGNFRF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVV----QNFNTSAREVQKIRADADKEIELEISNLRR 165 E Y + L + A + VQ + D ++E S + Sbjct: 116 DEEGYLVDPRGYRLQGWEVQQANTSAAASGDTTAQATTGVQILGVPQDVKLENFQSPPQA 175 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 ++N + S F D +E IG + VY +G+ Sbjct: 176 TSRVDLILNVDSSSEDKSVSPTDPFTALFDTYDATAAEPIG-EASYAYQTTIKVYDENGS 234 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + TV D + + +I V + G K + + ++ Sbjct: 235 SHNMTVYMDPVANVEVTGAAAGKRYWEYIIAVPPGEDNRDFWGAGDEKRGILMSGTLTFN 294 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 +L+ M+ + + + + I + S T Sbjct: 295 AAGELENMSAFTVNDLTADPELPASWVPANFSQNGYPICTANFLGAANGSTTGSGILAES 354 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N + V K A P + + I A +L Sbjct: 355 ENTKNIEINFGVRNKTSSWEPGPAIPPAAATGQDNLGDYPTIDTSGATPVLVGSLGAING 414 Query: 406 NSIGWLEKNRSDSHDLHMK 424 + + S ++ Sbjct: 415 FASTEISALSSTNYSTGST 433 >gi|134300225|ref|YP_001113721.1| hypothetical protein Dred_2386 [Desulfotomaculum reducens MI-1] gi|134052925|gb|ABO50896.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 266 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 44/171 (25%), Gaps = 2/171 (1%) Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 V D I+ I+ S+ L G + + Sbjct: 96 GQGFFKVTPATGDDDIEYYTRDGSFYITTIDDETVLVNSSGYKLVWDGELDAETYKAYSV 155 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 D + + L+ N ++ S + + Sbjct: 156 DEKGTVWGQRIEDGKTEEVGNIELFTFPAPSGLVSKGSNL--YMATEASGEETSGVPGED 213 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I Y V+L E+ +I+ +++Y +++ I D+M Sbjct: 214 GIGSIYSGYLERSNVDLATEMIGMIEAQRAYAANSRTIQTADEMWDRANNL 264 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 23/169 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ + + + +I NI N + + + T Sbjct: 2 IIKTLSSGASGMRAHQLKLDTIGNNIANINTTAFKKNRTDFGEIVRQAIGEDGIPAANDP 61 Query: 45 --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V+ L + Q F + DD + Sbjct: 62 RPEGGSGVRIVSLARVIDQ---GDLIQTGRDLDLAIEGQGFFKVTPATGDDDIEYYTRDG 118 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 E+ N S L +AE V R + Sbjct: 119 SFYITTIDDETVLVNSSGYKLVWDGELDAETYKAYSVDEKGTVWGQRIE 167 >gi|291520178|emb|CBK75399.1| Flagellar hook-associated protein [Butyrivibrio fibrisolvens 16/4] Length = 396 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 48/334 (14%), Positives = 96/334 (28%), Gaps = 10/334 (2%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 E++ R + + T + + A +F D + +++ Sbjct: 67 SEIKDPRDPSKNYYYPVFDTTNVSAEKDTDIGEIKALLMARGTGWTNFTDFYNENGTRLT 126 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 I + D TL + IN TV S V Sbjct: 127 AEDYQKGIANSIMMNSEAELD--TLLHQLVITINDLFSPLTTVASAYEGATTATYVNDKG 184 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + V K++ L + V + E+ + ++ P + Sbjct: 185 ETVQVDASKLRILDEKNCPVGSDLKLPPRELFVRNGCERYTLTEVQLDNMAEPVMMYLYN 244 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 +DL+N + I +N S+L N + Sbjct: 245 EEDLENDSTLYTMKNISINEDMIKQESYLPHLKFA--------DNTEAVDHQLGTNLSLI 296 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 F+ T + IG + + + I S +GV Sbjct: 297 WTKQEFNLNPSDTTPCGFSGFYVKWIGEIGNTGNVYRSTAQSLEGTKEEIEFSRQGVIGV 356 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + EEL+ +IK + +YN +++ I ++M++ L+ Sbjct: 357 SSDEELTTMIKYQSAYNAASRYINVVNEMIEHLV 390 >gi|255654319|ref|ZP_05399728.1| putative flagellar hook-associated protein [Clostridium difficile QCD-23m63] Length = 125 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 L ++ N A + N+ + +I NI N D + Y R+ T + Sbjct: 3 GLFSILNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRG 62 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V + +D A + G+ + E + ++ + + I Sbjct: 63 QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121 Query: 105 SKLR 108 Sbjct: 122 DVFF 125 >gi|89895710|ref|YP_519197.1| hypothetical protein DSY2964 [Desulfitobacterium hafniense Y51] gi|89335158|dbj|BAE84753.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 383 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 89/272 (32%), Gaps = 6/272 (2%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 ++++ + G + + S T ES + + N G P Sbjct: 117 AFTQDDDGTLTEPGTGAKVMGHMYGMEKSVDTMSTTTEDESKIDWTTLEAIKFNLGENPP 176 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +A D+ V + ++ + + P +N G Sbjct: 177 YVLSEATKIPPDAWVKSGDEWVYSNPSLIGVNATTTAPTGAVFDNTRGTITVTTDPTKPA 236 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + TI ++ + + ++ ++V + + ++ S ++ Sbjct: 237 DDTGIYTFTITNLDGEYADGTDIP----LATLTSFSVDSKGAITGVYSNGEASASRVIGQ 292 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A + + LL + N S + + +I S V+L +E Sbjct: 293 VAIASFSNDAGLLNLGNSFYA--ASNNSGQASIGGAGEDGRGNIVPSTVEMSNVDLSQEF 350 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I ++ + ++++I +D +LQ L++ + Sbjct: 351 TDMIVTQRGFQANSRVITVSDSLLQELIDLKR 382 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 28/304 (9%), Positives = 68/304 (22%), Gaps = 24/304 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + N + I NI N + + R + Sbjct: 1 MLRSLYSAISGLKNHQIKMDVIGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + + Sbjct: 61 GTNPAQIGLGSMVSSIDQIMTPGSSQSTGKDTDMMIQGKGFFVLQNNGETVYSRAGAFTQ 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + E+ V +T+ + KI + I+ + Sbjct: 121 DDDGTLTEPGTGAKVMGHMYGMEKSVDTMSTTTEDESKIDWTTLEAIKFNLGE------- 173 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 N A+K ++ D + +IG++ V + GT Sbjct: 174 ----NPPYVLSEATKIPPDAWVKSGDEWVYSNPSLIGVNATTTAPTGAVFDNTRGTITVT 229 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 T P + + + + DG + ++ A+ + + Sbjct: 230 TDPTKPADDTGIYTFTITNLDGEYADGTDIPLATLTSFSVDSKGAITGVYSNGEASASRV 289 Query: 290 LDEM 293 + ++ Sbjct: 290 IGQV 293 >gi|258625234|ref|ZP_05720146.1| Flagellar hook protein flgE [Vibrio mimicus VM603] gi|258582481|gb|EEW07318.1| Flagellar hook protein flgE [Vibrio mimicus VM603] Length = 398 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/389 (9%), Positives = 92/389 (23%), Gaps = 10/389 (2%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + NN + S ++ + G + + + + + + Sbjct: 18 NTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVASISQNFDKNGSITGTGRAMDMAI 77 Query: 153 DKEIELEISNLRRFL--SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + L + V N + A D + +S +G Sbjct: 78 NGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQGYSVDTNGELLSGSVG---- 133 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + T + + +P + S G Sbjct: 134 --DIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSFNSSYTTKVYDSLG 191 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + Q ++ + + Sbjct: 192 NAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKSDGTLESPKGSYKVSFPAAGAE 251 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I ++ + Q+ + + + + + Y + ++ Sbjct: 252 PLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYATYDNGESQRQGQVV 311 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A L + N W + S + + + ++ V+L EL Sbjct: 312 LANFADPQGLSKV--NDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEGSNVDLTSELVS 369 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L+ +++Y + K I DK+ Q L + Sbjct: 370 LMTAQRNYQANAKTISTGDKLTQALFNAI 398 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/400 (9%), Positives = 94/400 (23%), Gaps = 22/400 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + +++ +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D ++ + L Sbjct: 59 NFDKNGSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D E++ + ++N + ++ Sbjct: 119 YSVDTNGELLSGSVGDIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV---------------YTSDGTTLFET 230 ++ D L + + N + V + SDGT Sbjct: 179 NSSYTTKVYDSLGNAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKSDGTLESPK 238 Query: 231 VPRDINFEKMNSYTVTSE----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 ++F + + + + F VS+N + G++ + + +V Sbjct: 239 GSYKVSFPAAGAEPLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYAT 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + + DP + N + + S Sbjct: 299 YDNGESQRQGQVVLANFADPQGLSKVNDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEG 358 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + L N + A + + Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398 >gi|90415318|ref|ZP_01223252.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] gi|90332641|gb|EAS47811.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] Length = 944 Score = 85.5 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 49/403 (12%), Positives = 109/403 (27%), Gaps = 17/403 (4%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + + T D+ +E I+ +VQ + V +R Sbjct: 542 MSVSYAEGAFTVSSGTTGDTSSLALSGPTELAQALLGINVLGNIVQPETSQIYNVPAVRG 601 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 A + + + + VN T ++ + L + + Sbjct: 602 QASTPAIVTGNPMGIDPRKSFSVNSDNSSMTVIIDSISAQIELTEGLYSIGTFTEHLQET 661 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + D + T G T+ + ++ T S + + Sbjct: 662 INLMADSLGRTVSGITVDYQDATETLRITGSTTTDNSFIQVAGHADWGLENIDPGFGEAS 721 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI---------------AGNSENVP 315 L ++ Q + E D ++ Sbjct: 722 TFIELFPDTSGTSTVYVTQTKDGDWTETTDGGEFDSNDVPYWTPIFLDKGELTFDTSGSL 781 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 +A + I+ + Q+ S S L + + + N+ ++ Sbjct: 782 VSPVAGVKLESAGITGGDITLNYDNSTQFNSPFSVLSQSQNGAPEGDLVGVNIGDDGLVV 841 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 Y + K+ +A T L + + + S +L F I Sbjct: 842 ASYSNGSQKSLGKIILANFATPKGLRQVGD--TSYYATSVSGDANLGEPGAAGFGTIRAG 899 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EL LI ++++ + K I + + QT+++ Sbjct: 900 ARERSNVDLTAELVDLITAQRNFQANAKAIETSSSLTQTIIQI 942 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 26/257 (10%), Positives = 60/257 (23%), Gaps = 16/257 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 F + N A+ Q A NI N+ + R DT S V+ Sbjct: 2 SFYTSLTGLNAATTQLAVTSNNIANSGTGGFKRSDTDFGDIFATSPLEKASSVVGRGVSL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ + ++++ F L+ + ++ Sbjct: 62 KEVSQEFSQGNIEFSANSLDLAITGDGFFPLE------SSDGTKIYTRNGAFMLNEQNQM 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 N + L +D+ + + SA + + L + Sbjct: 116 VNSAGQALQSLPVDSTNKADFGVDPSALTIPRATVSEFLPTTEVELGLNLPSEVTPITAT 175 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 K + H ++ I + T + + Sbjct: 176 FNPDKPDTYHKTTSLTVYGTSGSANLATIYYVKTANATAETPFNKWQTYVYVDDQEVDTA 235 Query: 236 NFEKMNSYTVTSESNPI 252 + ++ N Sbjct: 236 LIQSSDTTGDQYFINKY 252 >gi|148926818|ref|ZP_01810497.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844543|gb|EDK21650.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 865 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N+ + + + + + AD ++ I++ ++ F Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + D +++ + T+ N+ ++ + L + Sbjct: 553 QSTVPPNAINGAGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 851 STSDQMLQTLIQLKQ 865 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 30/431 (6%), Positives = 90/431 (20%), Gaps = 43/431 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ + G L + I T +N + ++ + Q Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 D + + Q ++ I + +K+ D Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 +++ N + + + + + V + N+ + + Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNNNGNGQAGTPTINKNG 407 Query: 393 GINTNVTLLEY 403 T + + Sbjct: 408 SSLWTATNIAF 418 >gi|109947758|ref|YP_664986.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109714979|emb|CAJ99987.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 718 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +A+ +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + ++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASVGVSINQYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ P +++ S + +R + + Sbjct: 463 ASLIEGGAPASSSKFTHATHATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 44/469 (9%), Positives = 103/469 (21%), Gaps = 43/469 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160 + + ++ V + + + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN--NNDMV 218 R N I+ + ST + + Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGS 235 Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 +Y DG L + + + ++E++ + ++GV +S SAV + Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + V + + + + + A + Sbjct: 296 VAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387 + + +P+ ++ N+ D S + Sbjct: 356 DVTAFKYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASVGVSIN 415 Query: 388 FDPVAGIN---TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + IN T+ E + + ++ L + N S Sbjct: 416 QYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTAS 464 >gi|83309603|ref|YP_419867.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] gi|82944444|dbj|BAE49308.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] Length = 843 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/400 (10%), Positives = 104/400 (26%), Gaps = 10/400 (2%) Query: 81 QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 S ++ + + + SL S+ + + A + T Sbjct: 454 TSTAPYQDQRGVNPPSGAASMDIVDNSTPSLVYASQGRVDFTASSSADVQALDTKSFTIT 513 Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 + D I + T + T + + + Sbjct: 514 IGGYDLNVYFDTTGTISPTVGKEVVINLNNTNLTSGSDVATLVAQALRNPKNWDENTNGG 573 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 I+ + + S + + F N T ++S + S Sbjct: 574 IAATKTVVALGGKLPLFRANGSTLEIVQQQGGSTAKFSMANMGTTVTQSQTRNWSSGIPS 633 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + + + + + ++ + + + Sbjct: 634 VDTVNGEFYLNAITQVNPAITFNGDGTPKTVNVGKMAVNWANGAQSMTLVPNGTGADQRI 693 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q + +K ++ ++ + + + Sbjct: 694 NWFVGNT--------SQADGMTQLGGTYQLAYLTQNGAKFGNFSGVSVGTDGVVTALFDN 745 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + PVA L N W+E N S S+ L + + + Sbjct: 746 GVRRPVFQIPVATFTNPNGLESLTGN--SWIETNTSGSYTLRQANNAGAGSVQSASLEAS 803 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E + +I +++Y+ + K+I D+ML L++ + Sbjct: 804 TVDIGSEFTTMIITQRAYSAAAKIITTADQMLDELVQIKR 843 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 49/447 (10%), Positives = 107/447 (23%), Gaps = 20/447 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54 MSL + + S +I NI N + Y + Sbjct: 1 MSLYGALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTTYSPGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL 111 +S+ + D L A +++ Q + N + Sbjct: 61 VQSKPRAAIDSQGLLQATTNSTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDK 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E Y +N+S + + V T A K+ + + + + Sbjct: 121 EGYLQNVSGFYVQGWPLQPTNNNVLAKPTELTVDGNTYMKAYKQADGTFHYVNQNIINPQ 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 K+ + DQ + + G + + Y +++++ Sbjct: 181 ET------KSLNLKTIGGTADQTTQIKMGANLPSGDTIYNPASTSSSGYHQTSVLIYDSL 234 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 NF + T +++ + ++ + V + AL Sbjct: 235 GDTHNFNVNWTKTNSNQWDVETKSNFYSVASTLTDVKQNSTAALKIY--GAAAGNTGNGI 292 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + +P + + + L G I S + Sbjct: 293 TTLVTSASATNMGYFAGTGVIAMPQFTLGNPLLTAQRALPTGSILNISGASGTASTNNGD 352 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV---TLLEYARNSI 408 S V +A + + F G N T + Sbjct: 353 WYVSSTVATSPTIVDTVATAAAIEIGGANKTYTAAAFAANLGGLGNAIDFTGDAAYSQTD 412 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISES 435 + S+ L + + +S Sbjct: 413 YAVGDYIKVSNSLSTTNNTGYYQVSSK 439 >gi|75760642|ref|ZP_00740670.1| Flagellar hook-associated protein 1 [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491856|gb|EAO55044.1| Flagellar hook-associated protein 1 [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 208 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 14/178 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48 M L +N + A + +N+ N YVR+ Sbjct: 1 MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + + K + S + + S + E M N S + + Sbjct: 60 GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ++ +KN + T+I + N A+ + + A ++++ + L R Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDMKRMLMKLTRL 176 >gi|86152379|ref|ZP_01070589.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 260.94] gi|85840676|gb|EAQ57928.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 260.94] Length = 854 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P N E +I + + + P +S + Sbjct: 654 PAEINATGEGPNNIIVGSARFNNDGSLANYSPKTINFSPNNGAAPNQQIKLSFGTSGSND 713 Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + + + +++ + + +A + N Sbjct: 714 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 773 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L E N + S + + + S V+L L+ LI +++ Sbjct: 774 SGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 831 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y ++K I +D+MLQTL++ + Sbjct: 832 YQANSKTISTSDQMLQTLIQLKQ 854 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 31/426 (7%), Positives = 85/426 (19%), Gaps = 42/426 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212 + +NL LS T + + D + + + + + Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ G L + I ++ T ++ + + +NQ + G Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYTDAKFSTFKAPNVNVFDPNSKTNQTGVIFWGDK 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + ++ + D + + + + Sbjct: 293 DNKVILDITLNGVHIENKDIQSLDQAIEYINTFTTPTD----TRPGTGVKAVRKADGSGI 348 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 T L + + N+ A + N N + Sbjct: 349 EFINTNADGTTDNMKNIKLTVNNANTAGERQNLTYHAQNDNFTAAMPGGKNGNSAWIQGG 408 Query: 393 GINTNV 398 Sbjct: 409 ANVNGN 414 >gi|315125109|ref|YP_004067113.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018831|gb|ADT66924.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 855 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P N E +I + + + P +S + Sbjct: 655 PAEINATGEGPNNIIVGSARFNNDGSLANYSPKTINFSPNNGAAPNQQIKLSFGTSGSND 714 Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + + + +++ + + +A + N Sbjct: 715 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 774 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L E N + S + + + S V+L L+ LI +++ Sbjct: 775 SGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 832 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y ++K I +D+MLQTL++ + Sbjct: 833 YQANSKTISTSDQMLQTLIQLKQ 855 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 29/426 (6%), Positives = 91/426 (21%), Gaps = 38/426 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212 + +NL LS T + + D + + + + + Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ G L + I ++ T ++ + + +NQ + G Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYTDAKFSTFKAPNVNVFDPNSKTNQTGVIFWGDK 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + ++ + D + + ++ G+ + Sbjct: 293 DNKVILDITLNGVHIENKDIQSLDQAIEYINTFTTPTDTRPGTGVKAVRKADGSGIEFIN 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ N + + + ++ +N + + + Sbjct: 353 TNADGTTDNMKNIKLTVNNANTAGERQNLTYHAQNDNFTAAMPGGGKNGNSAWIQGGANV 412 Query: 393 GINTNV 398 N Sbjct: 413 NGNAES 418 >gi|91224199|ref|ZP_01259462.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269965644|ref|ZP_06179757.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] gi|91191110|gb|EAS77376.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269829712|gb|EEZ83948.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] Length = 398 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/395 (9%), Positives = 93/395 (23%), Gaps = 2/395 (0%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 AL + + + N + + + S G + Sbjct: 6 ALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVASISQNFDKDGS 65 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + D I + + + + F T + + S Sbjct: 66 ITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFSTDKNNFVTANSGAKLQGYSVDSNN 125 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 ++ V N + T + + + NP S Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDSLDFVANFDASASVIDKAVTPFNPKDPSSFNSSYTTK 185 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 G + Q ++ + + + Sbjct: 186 VYDSLGNSHTVTQYFTKTASNSWEVNVQVDGGTTPVATVPVTFGKDGSLSAPTAPFNVSF 245 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + Q+ + + + + G + Y + ++ Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEGNGMVYATYTNGQSQ 305 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L + + W + S + + + ++ V+L Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTSWTQSFSSGAPIMGVPGSGTMGDLTPGALEGSNVDL 363 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EL L+ +++Y + K I +DK+ Q L V Sbjct: 364 TSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 47/393 (11%), Positives = 91/393 (23%), Gaps = 7/393 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S G R + D+ ++ S L Sbjct: 59 NFDKDGSITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFSTDKNNFVTANSGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ ++ + + + ++N S + K S Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDSLDFVANFDASASVIDKAVTPFNPKDPSSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N+ ++ V GTT TVP + S Sbjct: 179 NSSYTTKVYDSLGNSHTVTQYFTKTASNSWEVNVQVDGGTTPVATVPVTFGKDGSLSAPT 238 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + G S + + A V N + Sbjct: 239 APFNVSFPAAGANAMSVDINLKGSTQFGAAF----GVSTNSPNGYTSGELAGVRVEGNGM 294 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + L + D N + S + GS + L Sbjct: 295 VYATYTNGQSQLQGQVVLADFANTQGLAKVSGTSWTQSFSSGAPIMGVPGSGTMGDLTPG 354 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 DL + + A + Sbjct: 355 ALEGSNVDLTSELVALMTAQRNYQANAKTISTS 387 >gi|291276324|ref|YP_003516096.1| flagellar hook subunit protein [Helicobacter mustelae 12198] gi|290963518|emb|CBG39349.1| flagellar hook subunit protein [Helicobacter mustelae 12198] Length = 705 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/441 (9%), Positives = 112/441 (25%), Gaps = 4/441 (0%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 T + + + + + + + M + N Sbjct: 269 RISFTNDSAASGISSVVAAQNA-INALKQKTGVEAFVDNGMLRLQNKNNMDGNAEVKNIR 327 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + +++ T + + F T+ I+ DA+ + Sbjct: 328 ITADGTGAFANFIEGDSDITAFRYRYTTSASPDSGTGQFRTTEDLRALIQYDANLIKDPS 387 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + S N + +K + + ++ + S + ++ + + Sbjct: 388 QAYTDSTASVSVKFNKYGMLEIQNKDNGDELKQDLNIFVSGYSSENVTNNVLFKDTMKGL 447 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T F T + + ++ S + +A++ Sbjct: 448 NT-SSLVEGGVSASSGVFTHAVHSTSIDIIDSLGTKHMIRFEFYKSGTSEWNWRAIVPDP 506 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + S+ + + L G S Sbjct: 507 AELYGGSATRPNIFEGGTVRFNSDGSLAGMSPPVLQFDPKNGSDSPQRINLSFGKSGGFG 566 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + L+ + + + +A N Sbjct: 567 GLTSVDKQSETYAISQNGYQAGSLVDVRFDSNGSLLGGFSNGKSMALAQVALANFANNTG 626 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N S + + ++ S V+L L+ LI V++ + Sbjct: 627 LQAIGGNVFSTSGN--SGDPIIGAANTGRRGSVNGSKLEMSNVDLSRSLTQLIVVQRGFQ 684 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K + +D++L TLL + Sbjct: 685 ANSKAVTTSDQILNTLLSLKQ 705 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 37/458 (8%), Positives = 96/458 (20%), Gaps = 28/458 (6%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVTVVTQRSEN 59 NI N + + Sbjct: 1 MQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLG 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISKLRDSLESYSKN 117 N+ + + + + Sbjct: 61 VNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVT 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFLSELTVVN 174 ++ + D+ + V + + +I+ + +S +N Sbjct: 121 NGGYVVQGWMKDDLRNAEKISEDDFFRVDTTKPIQNIQIDPAMMMPARASSNISLRANLN 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-----FE 229 + A D + V + + + ++T G + Sbjct: 181 AGRHVDQVANVFALDSTTKTPVDGINPIYDSHDNLTQKAEDFGALFTQSGDAIGLTENQG 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 E +N TSE + I I+ +S SA Q + + Sbjct: 241 IWVSYKTSEMVNDIEATSEESSIEINHTRISFTNDSAASGISSVVAAQNAINALKQKTGV 300 Query: 290 LDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++ ++ + N A + + Sbjct: 301 EAFVDNGMLRLQNKNNMDGNAEVKNIRITADGTGAFANFIEGDSDITAFRYRYTTSASPD 360 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S R + ++ + S + F + I E + Sbjct: 361 SGTGQFRTTEDLRALIQYDANLIKDPSQAYTDSTASVSVKFNKYGMLEIQNKDNGDELKQ 420 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + ++ S++ ++ + ++ S GV+ Sbjct: 421 DLNIFVSGYSSENVTNNVLFKDTMKGLNTSSLVEGGVS 458 >gi|167467491|ref|ZP_02332195.1| flagellar hook protein FlgE [Yersinia pestis FV-1] Length = 314 Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 2/222 (0%) Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 N + + D P + M G+ + Sbjct: 94 DATDGNTWDVYTRDSSAKVTDPADPTDPAAAAKRGSMVFDSNGALKNVTNGTNATSTTDF 153 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 F Q S + + + + ++ Sbjct: 154 TFTIPMGVVNGAPAQSFALNVAGSKQQNTGADSIVAQNQTGYAAGEFTGFQINSDGSVVG 213 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 Y + + + + L N W E S + L F ++ Sbjct: 214 TYSNQQTQLLGQIVMVNFSNPEGLSSEGDNV--WKETQSSGNPTLGTAGSGGFGTLTSGA 271 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V+L +EL +I +++Y + + I D++LQTL+ Sbjct: 272 LESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 313 >gi|88597739|ref|ZP_01100972.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 84-25] gi|88190043|gb|EAQ94019.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 84-25] Length = 865 Score = 85.1 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N+ + + + + + AD ++ I++ ++ F Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + D +++ + T+ N+ ++ + L + Sbjct: 553 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 851 STSDQMLQTLIQLKQ 865 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 31/431 (7%), Positives = 90/431 (20%), Gaps = 43/431 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ + G L + I T +N + ++ + Q Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 D + + Q ++ I + +K+ D Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 +++ N + + + + + V N N+ + + Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNG 407 Query: 393 GINTNVTLLEY 403 T + + Sbjct: 408 SSLWTATNITF 418 >gi|320107029|ref|YP_004182619.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925550|gb|ADV82625.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 408 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 41/478 (8%), Positives = 129/478 (26%), Gaps = 75/478 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+ A + S +I N+ N ++ Y +++ + Sbjct: 3 SFSIALSGLKADSVALDTIGNNLANMNSVAYKKQNVNFSDL------------------- 43 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 F + A+ +S + N Sbjct: 44 -----------------FYQTIGVSGANTPQQVGLGTQVSDISTDYTQGGFNPGGSSTQM 86 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + VV VQ++ + D +++ + + + + Sbjct: 87 AINGDGFFVVS-----NGGVQELTRNGDFQLDSSGNLITSDGQSVMGYAATGGVVNGNTA 141 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + + + I ++ ++ + + S T F+++ + + + T Sbjct: 142 LSALNIPTGQTQAATATTAITMTAVLNSGAAVGTSFSTSTPAFDSLGQSHSVTTTFTKTG 201 Query: 246 TSESN---PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + ++ + AL+ ++ I + + A + + Sbjct: 202 DNTWDYSVTLPSGDAGAATGNTGTLTFDSNGALISPTTNISNISFTGMKDQASDMNLQWP 261 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + G + Q S + S Sbjct: 262 LYNSTGGG-----------------------------LITQTAVTASSANFAANGSPSGK 292 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + + + + +A ++ L + ++ S S ++ Sbjct: 293 YQSFSVDSTGTITAQFSNGNTEVLGQVALATVSNEQGLTRMGNDL--YVASRASGSPNVG 350 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + V++ E + LI ++++ ++K + D + Q + ++ Sbjct: 351 VAGVGGRGDIEGNALELSNVDISTEFANLIVAQRAFEANSKTVTTFDTVTQDTIAMIR 408 >gi|220904530|ref|YP_002479842.1| hypothetical protein Ddes_1261 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868829|gb|ACL49164.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 808 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/313 (10%), Positives = 77/313 (24%), Gaps = 5/313 (1%) Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 VN A ++ + + ++G +T+ + Y Sbjct: 501 YGSASVNGATVEAMSNGSSYYFIDAANGNANCYNTTVVGGNTVPAYQDSYGYYHIGAN-- 558 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + + + + ++++ +A+ K + Sbjct: 559 GPVYGQTPGGVDVLHDSGGYYLDDGTVPHNYITTSDFTAITATAFKPTAYTAPTDASRPV 618 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + L + + VP + + S Sbjct: 619 ADTETANSSLASLTTMSRVSGTSPTGVPVFENVINYGTTIPTMTAVERQEYASVANTTSY 678 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 R + L NV G + Y + + + L N Sbjct: 679 TVQNRTQDGYASGTLSNVNIDNG-GVVYGIYSNGKTIPLYQIALYDFQNHQGLYREGGNL 737 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 N S L + F V++ E +I ++ + ++K I Sbjct: 738 FS--ATNDSGEPQLGVAGDNGFGKTKAYNIEQSNVDMTTEFVQMISTQRGFQANSKGITT 795 Query: 468 TDKMLQTLLEGVK 480 D ML+T++ + Sbjct: 796 VDTMLETVIGMKR 808 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 44/449 (9%), Positives = 108/449 (24%), Gaps = 33/449 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPEN---- 49 M L A + + + Q+ + NI N + + + Sbjct: 1 MGLSASMWTSVSGLLSHGQKMNVVGNNIANVSTLGFKSQRMDFNDYLYRGIGTTSGPSQI 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + L + +S F + + Sbjct: 61 GAGASVYAILGDFSQGSLESTNSVTDLAIDGNGFFQV-----RKPNSKQMYYTRAGDFYF 115 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + +N +L ++N +++ N + + A + + Sbjct: 116 NKDRELQNPEGYLLQGWKVNNEKKLTFNSGATNLGNTDLSKSAYVGSGTPTDIVLDSWNI 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLL--------QKISEIIGISTIVRNNNDMVVYT 221 + + F +D + S+ T + + VY Sbjct: 176 IPQQTTNVTFTMGLTNDGKGDRTTSNTSPMTALFDLWDASSKPPLADTAYATQSSIDVYD 235 Query: 222 SDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 G T ++ V N+ + + + S + Sbjct: 236 EGGGTHTLTVYYDQVDARKTDSNGNTIYDIKGLPAGYTIYEYLVTIPPSEDRRSYGGEGY 295 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + + + G + + Sbjct: 296 NAATNTWTKEPTKFYDDPITGTNKQAGVLMSGVMIFDASGQLVNQTAYSYGATETPTANN 355 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + VNP +S+ R + F N L N ++ + PV+ + Sbjct: 356 QVAVNPSEKSSWQPTRTSSNGLPVFSANFSGQP----LANSVSETMQTSVGGTPVSQVQN 411 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +T L++ +IG N + + S Sbjct: 412 YITELDFGLKNIGNPAWNNPTATAVKTNS 440 >gi|332673326|gb|AEE70143.1| flagellar hook protein FlgE [Helicobacter pylori 83] Length = 718 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGTQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSVARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 41/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + + + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINALKSQTGIEAYLDGTQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|315930325|gb|EFV09413.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 305] Length = 864 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N+ + + + + + AD ++ I++ ++ F Sbjct: 492 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 551 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + D +++ + T+ N+ ++ + L + Sbjct: 552 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 611 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 612 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 671 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 672 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 731 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 732 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 791 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 792 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 849 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 850 STSDQMLQTLIQLKQ 864 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 31/428 (7%), Positives = 88/428 (20%), Gaps = 43/428 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + NI N + + Sbjct: 3 SLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGGSN 62 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V+V + + + F + + D + Sbjct: 63 PLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTNYLT 114 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-- 160 + N + ++ I+ ++ + + T E+ Sbjct: 115 RSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAI 174 Query: 161 -----SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 S L S + +K + + + + + + Sbjct: 175 KANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVD 234 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 ++ + G L + I T +N + ++ + Q Sbjct: 235 AGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGTANQ 291 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 D + + Q ++ I + +K+ D ++ Sbjct: 292 KVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVN 349 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + N + + + + + V N N+ + + Sbjct: 350 DNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSL 409 Query: 396 TNVTLLEY 403 T + + Sbjct: 410 WTATNITF 417 >gi|295696121|ref|YP_003589359.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295411723|gb|ADG06215.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 2/243 (0%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N TV +++ + ++ + G+ P + + + M Sbjct: 25 NIANVNTVGFKASRVMFHDLISQTLSGATAPGDTTGGSNPQQVGLGVGLASIDTPMTPGA 84 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 +A + + ++DG + ++ G + Sbjct: 85 PMMTGVPTDLAIDGNGFFVVQLSDGATQAYTRAGNFHIDSNRNLVTSEGLFVLDTGGAPI 144 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ ++ D + +A L + N ++E S Sbjct: 145 QLPDNTKSVSIDKNGNVNCLLDDGTTQTAAQIGLANFANPEGLQKIGNNL--FVETTNSG 202 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + D+ +Q VF I+ V+L E + +I ++++ + + I D+MLQ ++ Sbjct: 203 TADVQAPNQGVFGSITSGALEMSNVDLTNEFTEMIIAQRAFQANARTITSDDQMLQEVVN 262 Query: 478 GVK 480 + Sbjct: 263 LKR 265 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 10/128 (7%), Positives = 25/128 (19%), Gaps = 8/128 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + I NI N + + M + Sbjct: 1 MMRSLYSAVSGMRGFQTKMDVIGNNIANVNTVGFKASRVMFHDLISQTLSGATAPGD--- 57 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S Q L ++ M+ ++ + + Sbjct: 58 -----TTGGSNPQQVGLGVGLASIDTPMTPGAPMMTGVPTDLAIDGNGFFVVQLSDGATQ 112 Query: 123 LGKTVIDN 130 + Sbjct: 113 AYTRAGNF 120 >gi|218660672|ref|ZP_03516602.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 374 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/375 (12%), Positives = 101/375 (26%), Gaps = 5/375 (1%) Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + S+ + + + D A F + + A + + NL Sbjct: 3 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNAA 62 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--RNNNDMVVYTSDGT 225 + A + D L +V ++ I S + +++ V Sbjct: 63 GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQDGLTAIASTSGVFKGNLDSNAKVAPVAPA 122 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TL + V + + + P A + Sbjct: 123 TLPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTKTSVVTPPPATPATAATWQVAMFR 182 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + N + L + +D Q I+ Q Sbjct: 183 NADAAVGGTTSFPYTTAAVGTGTLNFDANGKLTTGGAVNIVDPVTGQTIAMDFSGFTQLG 242 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 ++ S + + +V + G + Y D K P+A + + L + Sbjct: 243 ADFSGTGTPNGQAATPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSG 301 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N +S I V+L EL+ +I+ ++SY ++K+ Sbjct: 302 NVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVF 359 Query: 466 MFTDKMLQTLLEGVK 480 ++ L+ + Sbjct: 360 QTGSDIMDVLVNLKR 374 >gi|126697826|ref|YP_001086723.1| flagellar hook protein [Clostridium difficile 630] gi|115249263|emb|CAJ67076.1| Flagellar hook protein FlgE (Distal rod protein) [Clostridium difficile] Length = 327 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 12/257 (4%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G P D+ + V + ++ + + G G +K + R Sbjct: 83 GNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNG 142 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + Q E P + I D + + I + Sbjct: 143 DGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGT 202 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 S + V + + F AG++ Sbjct: 203 VEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQIYAFQNPAGLD-------- 254 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 A + S + I + V++ EE + +I +S+ ++K Sbjct: 255 AAGGNLFKPSANSGDPQIA----GATGTIIQGAIEASNVDIAEEFTEMIIASRSFQANSK 310 Query: 464 LIMFTDKMLQTLLEGVK 480 +I +D++LQ ++ + Sbjct: 311 IISTSDEILQEIINLKR 327 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/281 (9%), Positives = 73/281 (25%), Gaps = 24/281 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + + I N+ NA ++ + T S Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + S NK+M + + + + + + S Sbjct: 61 GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + KN+ L + ++ + A + ++ K E + Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIP 178 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220 L+ + V + +++ + L QR + I + + + + Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 P ++ N + ++ S I G + Sbjct: 239 IQKVQIYAFQNPAGLDAAGGNLFKPSANSGDPQIAGATGTI 279 >gi|218563315|ref|YP_002345095.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112361022|emb|CAL35823.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 865 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N+ + + + + + AD ++ I++ ++ F Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + D +++ + T+ N+ ++ + L + Sbjct: 553 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 851 STSDQMLQTLIQLKQ 865 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 31/431 (7%), Positives = 90/431 (20%), Gaps = 43/431 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ + G L + I T +N + ++ + Q Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 D + + Q ++ I + +K+ D Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 +++ N + + + + + V N N+ + + Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNG 407 Query: 393 GINTNVTLLEY 403 T + + Sbjct: 408 SSLWTATNITF 418 >gi|15645489|ref|NP_207664.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2506418|sp|P50610|FLGE_HELPY RecName: Full=Flagellar hook protein flgE gi|2313997|gb|AAD07911.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 718 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 35/470 (7%), Positives = 102/470 (21%), Gaps = 45/470 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 161 ----------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 AI +S D ++ ++++ Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSGTNLAQVAEDMGS 235 Query: 211 --VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + +++ + G + + + ++ T E N + I S+ ++ Sbjct: 236 LCNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 A+ ++ ++ + + G D D Sbjct: 296 VAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + ++ R + + + N+ + + Sbjct: 356 DVTAFKYSY-THSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSV 414 Query: 389 DPVAGI-----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + E + + ++ L + N S Sbjct: 415 NQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTAS 464 >gi|255099422|ref|ZP_05328399.1| flagellar hook protein [Clostridium difficile QCD-63q42] Length = 327 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 12/257 (4%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G P D+ + V + ++ + + G G +K + R Sbjct: 83 GNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNG 142 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + Q E P + I D + + I + Sbjct: 143 DGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGT 202 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 S + V + + F AG++ Sbjct: 203 VEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLD-------- 254 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 A + S + I + V++ EE + +I +S+ ++K Sbjct: 255 AEGGNLFKPSANSGDPQIA----GATGTIIQGAIEASNVDIAEEFTEMIIASRSFQANSK 310 Query: 464 LIMFTDKMLQTLLEGVK 480 +I +D++LQ ++ + Sbjct: 311 IISTSDEILQEIINLKR 327 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 75/281 (26%), Gaps = 24/281 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + + I N+ NA ++ + T S Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + S NK+M + + + + + + S Sbjct: 61 GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + KN+ L + ++ + A + ++ K E + Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIP 178 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220 L+ + V + +++ + L QR + I + + + + Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 T P ++ E N + ++ S I G + Sbjct: 239 IQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGTI 279 >gi|222833046|gb|EEE71523.1| predicted protein [Populus trichocarpa] Length = 264 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%) Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G+ S K Y + + + + TL + ++ + Sbjct: 135 AINGTTSDKVTLGKATDPQYGTAYQRDAGNASSFLALRDSKLFDGSTTLSDGFSTAMAQV 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S+ + ++ + GVNL EE + L++ +QSY S K++ + Sbjct: 195 GTRTQSAQYAAKLSETIAKNLEADRTAVSGVNLDEEAAKLLQYQQSYQASAKMLQVAQSI 254 Query: 472 LQTLLEGV 479 ++L+ V Sbjct: 255 FDSVLQTV 262 >gi|57236913|ref|YP_179866.1| flagellar hook protein FlgE [Campylobacter jejuni RM1221] gi|57165717|gb|AAW34496.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|315059173|gb|ADT73502.1| Flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni S3] Length = 845 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 37/386 (9%), Positives = 98/386 (25%), Gaps = 13/386 (3%) Query: 106 KLRDSLESYSKNLSEDILGKTV----IDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 ++++ KN T + + D ++ +++ ++ Sbjct: 462 NYWNAIQGSLKNSDARTFRTTEDLRELLQRDARYGVDYDGDGSKTYDADDINQAVKVVVT 521 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 F I + + + + + + Sbjct: 522 ENGNFAISNANETSTIPANAGAGNTQVTTNPKNMSFNITAYSNKQGTVSTNDAFAKIFKA 581 Query: 222 SDGT-TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 DG T+ + + + + + + + I Sbjct: 582 FDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIR 641 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 P N E +I + + + P +S Sbjct: 642 VPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSPNNGAAPNQQIKLSFGTSG 701 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + + + + +++ + + +A + Sbjct: 702 SNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASV 761 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 N L E N + S + + + S V+L L+ LI + Sbjct: 762 ANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIII 819 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ Y ++K I +D+MLQTL++ + Sbjct: 820 QRGYQANSKTISTSDQMLQTLIQLKQ 845 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/421 (6%), Positives = 93/421 (22%), Gaps = 38/421 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + + E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ ++GT L + I ++ T + + + +NQ ++ G Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + ++ + + + ++ ++ + G+ + Sbjct: 293 DNTVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ N + + + WN N + +S + Sbjct: 353 DNADGTTDNMKNINLTVNQANTAGERHTITWNAGNNNFTAASAKNGANSVWIPTAANVNG 412 Query: 393 G 393 Sbjct: 413 N 413 >gi|317180632|dbj|BAJ58418.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 718 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/470 (8%), Positives = 104/470 (22%), Gaps = 40/470 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMV 218 R N I+ + ST + Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLTQVAEDMGS 235 Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 +Y DG L + + + ++E++ + ++GV +S SAV + Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + + + + + + + A + Sbjct: 296 VAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387 + + +P+ ++ N+ D S + Sbjct: 356 DVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSVN 415 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + IN N ++ SDS ++ + ++ + Sbjct: 416 QYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASL 465 >gi|89098635|ref|ZP_01171517.1| flagellar hook protein [Bacillus sp. NRRL B-14911] gi|89086597|gb|EAR65716.1| flagellar hook protein [Bacillus sp. NRRL B-14911] Length = 270 Score = 84.7 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 58/227 (25%), Gaps = 9/227 (3%) Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + + Q L + ++ G+ Sbjct: 46 TFKDMVSQTVSGATAGGAGVGGINPKQVGLGSQMSSIDTVDTQGSLQTTGRILDIGIQGD 105 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + + + + S N+ N++ +L Sbjct: 106 GYFRVQKGTNSYYTRAGNFYFDNSGNMVTASGEQVLNSNGTAINIPNISQIENLSIGADG 165 Query: 381 SFNKNFIFDPVAG-------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 S + G + N L + N + S + + Sbjct: 166 SISFIQGGTSTTGPTIGLARFSNNGGLEKVGNNL--YKSTANSGPAQNVLPGTSGAGSLV 223 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 224 SGSLEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 270 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 24/137 (17%), Gaps = 13/137 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54 +L + N + I NI N + Y + Sbjct: 7 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVTFKDMVSQTVSGATAGGAGVG 66 Query: 55 -----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q M ++ + + NS Sbjct: 67 GINPKQVGLGSQMSSIDTVDTQGSLQTTGRILDIGIQGDGYFRVQKGTNSYYTRAGNFYF 126 Query: 110 SLESYSKNLSEDILGKT 126 S + + + Sbjct: 127 DNSGNMVTASGEQVLNS 143 >gi|600725|gb|AAA92803.1| flagellar hook FlgE [Helicobacter pylori] Length = 718 Score = 84.3 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 43/438 (9%), Positives = 119/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +A+ +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGADWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 107/454 (23%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----NPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSPKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S N + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNANSG----------QFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434 >gi|261839317|gb|ACX99082.1| flagellar hook protein FlgE [Helicobacter pylori 52] gi|317178772|dbj|BAJ56560.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 718 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/470 (8%), Positives = 104/470 (22%), Gaps = 40/470 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMV 218 R N I+ + ST + Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLTQVAEDMGS 235 Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 +Y DG L + + + ++E++ + ++GV +S SAV + Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + + + + + + + A + Sbjct: 296 VAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387 + + +P+ ++ N+ D S + Sbjct: 356 DVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSVN 415 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + IN N ++ SDS ++ + ++ + Sbjct: 416 QYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASL 465 >gi|149195336|ref|ZP_01872423.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] gi|149134528|gb|EDM23017.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] Length = 634 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 39/401 (9%), Positives = 108/401 (26%), Gaps = 7/401 (1%) Query: 86 LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 L +D + I + E + A ++ N + Sbjct: 235 LTSTFCINDDIKDGKDVNIDFTLNGKEIKLNLPDGATKETISKEIANQLNSNGFIATANN 294 Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 ++ E LE +N + ++ + + + + L + Sbjct: 295 GELTISTTNEFLLESNNEILPSTNAAILTYKDTPEDEFDFNNMEDFINKLQTLALNTYGD 354 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV------V 259 ++ + NN + + + +TL + N + + N I+ + Sbjct: 355 IVNVSLDNNGRVAIENTSNSTLNSYLYSTNNSNENFIKNLGRVGNQIYPNTANKSYEFLA 414 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 +S + + + + + I + I + Sbjct: 415 NSQDFGGYVIDSNGDKIPVTINFTKKSVLNNTTIWKGTISINTPTQNITTTQDFTFDSNG 474 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + I + +N + ++ + +I + Sbjct: 475 FLLSPKEISFNNINFRFNISSFAKTDTNATNYSFNQDGVEEGFLQNYQIDENGKIIGIFS 534 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 ++ + F P+ L N + + + + S T Sbjct: 535 NNQDITFGQIPIFHFQNPQGLENIGSNLFRETSNSNKAFLYTNENGSYI-GKLLPSKLET 593 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ + ++ LI ++++ S K + +D+M+Q + + Sbjct: 594 SNVNMSQAMTELIVTQKAFQASAKTVTTSDEMIQKAINLKR 634 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 42/415 (10%), Positives = 109/415 (26%), Gaps = 20/415 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F + + NI N + + T+ + Sbjct: 1 MTTSFYNGVSGLISFQNGLDIWGDNIANINTPGFKESIPEFATIFSQ-TLSNASPTSDIG 59 Query: 63 FDKVLHAHSSAIGQQRLLQS------FEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +LH+ + + ++ S A ++ + + + Sbjct: 60 LGSLLHSTAKDMSIGNIVDSDNPFDIAIADEKGFLGVSYNGETFYTRNGNFTRDANGFLV 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N S L +N + + + D + + L + V+ A Sbjct: 120 NDSGAYLLVANANNLIKTENGY--------IVNRDINTDNLLPTNTFSPISLPNNVILPA 171 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 I K S + Q ++I + ++ NDM + +G L D+ Sbjct: 172 IPTKNVSLSTNLNNDSQITTTKPVTNDISFSAMYDKDGNDMQI--VNGQNLLFGFGNDVT 229 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + T T N DG V+ + + K+ + Sbjct: 230 YN-NGLLTSTFCINDDIKDGKDVNIDFTLNGKEIKLNLPDGATKETISKEIANQLNSNGF 288 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + I+ +E + L + + + + + Sbjct: 289 IATANNGELTISTTNEFLLESNNEILPSTNAAILTYKDTPEDEFDFNNMEDF--INKLQT 346 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ ++ N++ + ++ N + N+N ++ + Sbjct: 347 LALNTYGDIVNVSLDNNGRVAIENTSNSTLNSYLYSTNNSNENFIKNLGRVGNQI 401 >gi|68164546|gb|AAY87275.1| predicted flagellar hook protein [uncultured bacterium BAC17H8] Length = 1387 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 3/284 (1%) Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 L +I++I+ +T V Y+S+ + + + Sbjct: 1104 ALQTRINQIVDPTTGDTIGGVTVTYSSETNSFTFSTGTTGTDSTIKVKGAARLGLDDVPL 1163 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 GV + V + D+ + N + + + ++ + + Sbjct: 1164 GVGTVPEIYNLVQATDADGVALFVDANGEVVTNPPENLVEDYYPLYIDEGELTFDKTGKL 1223 Query: 316 -GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + + + + Q S L + + + Sbjct: 1224 VSPKNLVHYEKQEEGFSIALDVDFSTSTQLAQPFSVLTVEQDGFTSGRLDGIEIDSSGTI 1283 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 +Y + N VA N L + + E S + + F +I Sbjct: 1284 RANYTNGQNNPLGKIVVANFNNQNGLKQIGNA--TYTETAVSGTPQVGEAGSEGFGNILS 1341 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V++ EEL LI ++++ S K I T + QT++ Sbjct: 1342 GSLERSNVDITEELVNLITAQRNFQASAKAIETTTGLTQTIINI 1385 Score = 68.5 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 51/439 (11%), Positives = 99/439 (22%), Gaps = 21/439 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F A N +S ++ NI N + R + Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNASSSIGSGTIL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + A +A+ Q F ALK + + L + + Y Sbjct: 62 KGIKQQFTQGNIAASLNALDLAISGQGFFALKPSL----TSAQTVYTRNGSLNVNNDRYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L ++ V SA +Q D + I + VV D Sbjct: 118 VDSAGQFLLTYPVNTDGSVTAKDLDSAVPLQLPVTSGDPQATSNIKLGVNVNAASDVVTD 177 Query: 176 AIKFKTASKHDAHDFLDQRD----VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +F+ D +D + + + + V Sbjct: 178 RPQFQDGYTFDPNDPETFTNSTSITIFDDLGNPTIATVYFIKTQAASADDPTNKYDTRLV 237 Query: 232 PRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 D V IF+D + + +GK L ++ D + Sbjct: 238 INDTVITPDLVSAVDDAGKQIFVDRFGQQTTTIPDDNYFIEGKGSPLYKLDDLQTLVPSQ 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 F E+ N P F A + + VN P Sbjct: 298 PAKISGEQTSFDFGEEGDKLVEIVNDPLQFKATREAGNSGSDVYWGKDFLLVNVDDSDQP 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + + D + V Sbjct: 358 VSIDINPGLYNAEQLAAEVERAINAAYGDDRKFQVEQNVDDTITLDFQRVGADGTITPLT 417 Query: 409 GWLEKNRSDSHDLHMKSQV 427 + + ++ Sbjct: 418 NKVSVELLGTDSYVTEAMG 436 >gi|315931307|gb|EFV10276.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 327] Length = 847 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N+ + + + + + AD ++ I++ ++ F Sbjct: 475 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 534 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + D +++ + T+ N+ ++ + L + Sbjct: 535 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 594 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 595 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 654 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 655 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 714 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 715 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 774 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 775 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 832 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 833 STSDQMLQTLIQLKQ 847 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 31/414 (7%), Positives = 87/414 (21%), Gaps = 43/414 (10%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS-----------------------PENVTVVTQRS 57 NI N + + V+V + Sbjct: 1 MDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTR 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + F + + D + + N Sbjct: 61 IHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTNYLTRSGDFKLDAYGNFVN 112 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-------SNLRRFLSEL 170 + ++ I+ ++ + + T E+ S L S Sbjct: 113 NAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAIKANLNSGLNIGTSSR 172 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 + +K + + + + + + ++ + G L Sbjct: 173 NLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLR 232 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + I T +N + ++ + Q D + + Q Sbjct: 233 DGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGTANQKVNLDITLNGVRIQN 289 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + I + +K+ D +++ N + Sbjct: 290 ANIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVNDNADGTTDNMKNINL 347 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + V + N+ + + T + +A Sbjct: 348 VVANTNTAGELWNAVWDNNNQTFTFNNTGNGQAGTPTINKNGSSLWTATNITFA 401 >gi|57504594|ref|ZP_00370706.1| flagellar hook protein FlgE [Campylobacter coli RM2228] gi|57019489|gb|EAL56183.1| flagellar hook protein FlgE [Campylobacter coli RM2228] Length = 845 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 P N E +I + + + P +S + Sbjct: 645 PAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSPNNGAAPNQQIKLSFGTSGSND 704 Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + + + +++ + + +A + N Sbjct: 705 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 764 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L E N + S + + + S V+L L+ LI +++ Sbjct: 765 SGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 822 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y ++K I +D+MLQTL++ + Sbjct: 823 YQANSKTISTSDQMLQTLIQLKQ 845 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/482 (7%), Positives = 100/482 (20%), Gaps = 57/482 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + K + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTKGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GPVQTTNKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + + E Sbjct: 113 YLTRDGDFKLDAYGNFVNNAGFVVQGWNINWDNQTIDSSRSPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDI---------------NFEKMNSYTVTSESNPIFIDGV 257 + ++ ++GT L + I N + T+++ IF Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR----VLIGSFSEKDPIAGNSEN 313 + N + I+ + N + + + D N Sbjct: 293 DNAVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 D +K+++ + Q + + + + + + + A Sbjct: 353 DNADGTTDNMKNINLTVHQANTAGERHQINWVAANNNFTATSTKNNANSVWIPTAANVNG 412 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 +++ + + + N + + Sbjct: 413 NAESIQIITAHKYVYSSNPVDIGPMYNPDGGPQFQPGVGNNAPTDPASLNYWNAIQGSLK 472 Query: 434 ES 435 S Sbjct: 473 NS 474 >gi|208434779|ref|YP_002266445.1| flagellar hook protein [Helicobacter pylori G27] gi|208432708|gb|ACI27579.1| flagellar hook protein [Helicobacter pylori G27] Length = 718 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 42/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +A+ +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282 ++ +++ S + +R + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V + + + ++ N + L G S + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 108/454 (23%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S N + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNANSG----------QFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434 >gi|3286760|emb|CAA05173.1| flagellar hook subunit protein [Campylobacter jejuni] Length = 862 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 50/404 (12%), Positives = 110/404 (27%), Gaps = 31/404 (7%) Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 D + ++ ++ + R + +R ++ + Sbjct: 461 SFTDDDGVDTTRPTDPASAAYWDAMNGGLLNTNARTFRTTEDLRELLQRDARYGVDYDGS 520 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 VN A+K + + + + + + I M + + Sbjct: 521 GNFAAADVNQAVKVVVTANGNFAISNAKENSSIPANAGTGITGAITTEPKAMSFNITAYS 580 Query: 226 TLFETVPRDINFEK---MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 TV + F +T + + + +S+ + + + Sbjct: 581 NKAGTVTTNDAFTAIFKAWDGPLTVGGSIKESEQLKLSAFSAGLEIFDSLGSKHTLEVQF 640 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V Q +I E I E + + D L TI +P Sbjct: 641 VKQSTTQDGGNEWQMIIRVPEPAEINTTGEGQIISSVGTARFNNDGSLASYTPRTINFSP 700 Query: 343 QYRSNPS--------------------------FLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + P+ G S + + +L+ Sbjct: 701 NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYSSGNLKPDAIRVDEKGNLLG 760 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + +A + N L E N + S + + + S Sbjct: 761 EFTNGKTFRVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSA 818 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 819 LEMSNVDLSRALTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 862 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 35/446 (7%), Positives = 100/446 (22%), Gaps = 40/446 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ NI N + + Sbjct: 1 MMRSLWSGVRRLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + +S F + + D + Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQ---GSVQTTNSNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N S I+ I+ ++ + + + E Sbjct: 113 YLTRDGAFKLDAYGNFVNNSGFIVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGYNNKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-- 270 + ++ + GT L + I ++ T++ D + + + Sbjct: 233 GVDAGSLFNASGTGLNLRDGQGIWVSYADAKYSTNKVGVSAFDANLQQNQTAAFWGSADQ 292 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 ++ + + + + Q + A I +F+ + + N Sbjct: 293 RVNLDITLNGVRIQNAEIQNIDDAIAYINTFTAPTDTRDGTGVRAVKSADGSGIEFVNDN 352 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 G ++ + S+ + + + N + + + + D Sbjct: 353 SDGTTDNMKNINLIVSDANTAGELWNAVWDPALNGQGGFTFNQNTPAITRNGTSLWTADQ 412 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRS 416 + NT +E + Sbjct: 413 ITPNNTPDGNTAVTLTGTDRVEVITA 438 >gi|308068661|ref|YP_003870266.1| flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] gi|305857940|gb|ADM69728.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] Length = 272 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 75/248 (30%), Gaps = 5/248 (2%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL--QIRDSVVPIFQNQLDEMAR 295 N T +S+ + ++ ++ G++ P + Q+ + L Sbjct: 25 NIANVNTTGFKSSRVMFKDILSQTSSGASAPGDAAGGINAKQVGLGSTVGSIDTLHLPGS 84 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + I G+ + + + L + + + G Sbjct: 85 AMTTNNPTDLRINGDGFFLVKMTGDQEVPYLTRAGDFHVDGNRQLVTSDGLFVADSGGGT 144 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS---IGWLE 412 + L +++ ++ D N V + L + + Sbjct: 145 PIQLNDLTTSFSISQDGTIVQQLSDGTVDNQTKVGVTKVINPEGLEKIGGSLYRATVNSG 204 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + I V+L E + +I ++ + ++++I +D++L Sbjct: 205 EEGAVNPMEANSTDAGTGAIVAGQLEMSNVDLTGEFTEMIVAQRGFQANSRIITTSDEVL 264 Query: 473 QTLLEGVK 480 Q ++ + Sbjct: 265 QEVVNLKR 272 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 6/52 (11%), Positives = 12/52 (23%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54 +L + + I NI N + + M + Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGA 52 >gi|284041521|ref|YP_003391861.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945742|gb|ADB48486.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 293 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 68/272 (25%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T N V T F+ + T SN + I V + + + Sbjct: 22 TANDLANVNTVAYKSSRTTFQDSLAQLQRGAAGPGNGTGGSNALQIGLGVKLGSVDNIMT 81 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +G + D + + + AGN + Sbjct: 82 EGAPQTTGSPLDVYIEGSGWFRVANGTPPAVPTAFQWTRAGNFTTNSQGHLITSTGQYVV 141 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + Y N + + + N +F + Sbjct: 142 GRGATATPDGRGGFTYAPNATDSYIQIPPGSTDVSISPDGGVSYVDRNRASPTFERRVTA 201 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A W E S + + V+L + Sbjct: 202 GYIALGKFANEAGLQRNGGSTWSESAASGAATVDTPGVGGNGRTLAGMLEMSNVDLATQF 261 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I ++ + ++++I +D+MLQ L+ + Sbjct: 262 TTMITAQRGFQANSRVISTSDEMLQDLVNLKR 293 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 21/296 (7%), Positives = 59/296 (19%), Gaps = 26/296 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + ++ N + Y T S Sbjct: 1 MMRGMFSAISGLKVNQTMLDVTANDLANVNTVAYKSSRTTFQDSLA-------------- 46 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L ++ G + + + + + + + + Sbjct: 47 ---QLQRGAAGPGNGTGGSNALQI--------GLGVKLGSVDNIMTEGAPQTTGSPLDVY 95 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL-TVVNDAIKFKT 181 + + +A + + I++ +++ + Sbjct: 96 IEGSGWFRVANGTPPAVPTAFQWTRAGNFTTNSQGHLITSTGQYVVGRGATATPDGRGGF 155 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 +A D Q +S + N T E Sbjct: 156 TYAPNATDSYIQIPPGSTDVSISPDGGVSYVDRNRASPTFERRVTAGYIALGKFANEAGL 215 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 S + G G + +L++ + + + R Sbjct: 216 QRNGGSTWSESAASGAATVDTPGVGGNGRTLAGMLEMSNVDLATQFTTMITAQRGF 271 >gi|108563278|ref|YP_627594.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|217033066|ref|ZP_03438533.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254779163|ref|YP_003057268.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|298736574|ref|YP_003729100.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|107837051|gb|ABF84920.1| flagellar hook protein [Helicobacter pylori HPAG1] gi|216945210|gb|EEC23895.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254001074|emb|CAX29021.1| Flagellar hook protein FlgE [Helicobacter pylori B38] gi|298355764|emb|CBI66636.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|317009123|gb|ADU79703.1| flagellar hook protein FlgE [Helicobacter pylori India7] gi|317012675|gb|ADU83283.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 718 Score = 84.3 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282 ++ +++ S + +R + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V + + + ++ N + L G S + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|210135063|ref|YP_002301502.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133031|gb|ACJ08022.1| flagellar hook protein [Helicobacter pylori P12] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|28900122|ref|NP_799777.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|153837072|ref|ZP_01989739.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|260365772|ref|ZP_05778268.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|260880694|ref|ZP_05893049.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|260897700|ref|ZP_05906196.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|260899389|ref|ZP_05907784.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|28808405|dbj|BAC61610.1| LfgE [Vibrio parahaemolyticus RIMD 2210633] gi|149749660|gb|EDM60405.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|308086228|gb|EFO35923.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|308092098|gb|EFO41793.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|308109176|gb|EFO46716.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|308114990|gb|EFO52530.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|328470101|gb|EGF41012.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329] Length = 398 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 36/395 (9%), Positives = 94/395 (23%), Gaps = 2/395 (0%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 AL + + + N + + + + G + Sbjct: 6 ALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVASISQNFDKNGS 65 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + D I + + T+ + F T + + S Sbjct: 66 ITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQGYSVDSNN 125 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 ++ V N + T + + + +P S Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSFNSSYTTQ 185 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 G + Q ++ + + + Sbjct: 186 VYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPTGSFNVAF 245 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + Q+ + + + + + Y + ++ Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEDNGMVYATYTNGQSQ 305 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L + + W + S + + + +++ V+L Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPIMGVPGSGTLGNLTPGALEGSNVDL 363 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EL L+ +++Y + K I +DK+ Q L V Sbjct: 364 TSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/393 (10%), Positives = 90/393 (22%), Gaps = 7/393 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + DH + ++ + L Sbjct: 59 NFDKNGSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ ++ + + + ++N + + Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N ++ V G T T+P N + + Sbjct: 179 NSSYTTQVYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPT 238 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 S + G S + + A V N + Sbjct: 239 GSFNVAFPAAGANAMSVDINLKGSTQFGAAF----GVSTNSPNGYTSGELAGVRVEDNGM 294 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + L + D N + S + GS + L Sbjct: 295 VYATYTNGQSQLQGQVVLADFANTQGLAKVSGTAWTQSFSSGAPIMGVPGSGTLGNLTPG 354 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 DL + + A + Sbjct: 355 ALEGSNVDLTSELVALMTAQRNYQANAKTISTS 387 >gi|255022066|ref|ZP_05294072.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254968552|gb|EET26108.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 416 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 45/473 (9%), Positives = 111/473 (23%), Gaps = 58/473 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 +N A + + A +I NI N + + + + + Sbjct: 2 GYNTAISGLDAAQTDLNTIGNNIANVNTVGFKESNAQFGDLYAASLAGSAGASTTPGIGV 61 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S Q + + L ++ + + + R+ S + + + Sbjct: 62 STVDLSQNFTQGNIQTTGNPLDMAINGPGFFIVNNNGTMDYTRNGQFHV----SSNGVLE 117 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 D + Q S I ++ + + +N + + Sbjct: 118 NNGDLPVQGFQPVPGSNGRFSTILSNLTISESAMPPQATSQAALVANLNANDVPPSVTP- 176 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 F N + Sbjct: 177 ---------------------------------------------------FSASNPNSY 185 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + D + + + + + + V GS + Sbjct: 186 NDSTTFQVYDSLGNAQDITLYFVQASGTGSANQPNQWDVYYSAGNSSGTTVATGSLTTLQ 245 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 G D IS + + S + + + ++ Sbjct: 246 FSNTGQLVSGGTASFTVSGWGDGSASSTISVNLSGSTLTNSPFAVTSENVNGYAPGTYSS 305 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++ +Y + K +A L + N W + + ++ Sbjct: 306 ISVQSTGEIDANYTNGQKKAIGKVALANFANLQGLAPISGNL--WSATATAGNPLVNSPG 363 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + V+L +L +I +Q+Y + I + Q+LL+ Sbjct: 364 TAGLGVIQSGAVESSNVSLSSQLVDMIVAQQAYQANTSTIKTEQQDTQSLLQL 416 >gi|83593766|ref|YP_427518.1| hypothetical protein Rru_A2431 [Rhodospirillum rubrum ATCC 11170] gi|83576680|gb|ABC23231.1| Protein of unknown function DUF1078 [Rhodospirillum rubrum ATCC 11170] Length = 442 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 53/489 (10%), Positives = 104/489 (21%), Gaps = 56/489 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVT 51 MSL F + S I N+ N + Y + DT V Sbjct: 1 MSLGGAFTNSSMAMITQSHALGQISTNVANINTTGYKQVDTNFKTLLSESTANFDFFGVK 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V R ++ L + Q + + D + Sbjct: 61 PVDYRRVSEQ---GGLLTTGRNLDVAIGGQGLFMVNQ---QADLSGETFYTRDGSFG--- 111 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + A + + A + E + Sbjct: 112 -------ARVAKETVGKVVAGNSYLSTQDGYYVMGWAADQAAVQAGTEPFPVNDT----- 159 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 K T + A + N S G ++ Sbjct: 160 ------KTGTITGARALSPIQLNTRAEADGQATTAAVVRANINALATTTQSLGIPVWGPE 213 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + S T ++ + V + N + Sbjct: 214 VTTTAADGTTSSTWPRQNVSLEFTPVAGTQNSWTVAVSDPNGGT---------------- 257 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ + P N I+ I Q Sbjct: 258 ----TGTATPAQVTFNGDGTLLSPDDGQLAVAVTYANGTTGTIAVDIDALTQVSGATQIR 313 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + K+ N+ L Y + + N L +N Sbjct: 314 NLDTNGYKEGSLISTNIDASGVLSGTYSNGQTLPLYKLALTDFQANDHLEAIGKNLYRAS 373 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + V ++ V+L ++ S +I + +Y+ S + D+M Sbjct: 374 DAAGESRIFSADSAASVGTTVTSGALEQSTVDLGDQFSKMITTQTAYSSSATVFRTCDEM 433 Query: 472 LQTLLEGVK 480 QT+ + Sbjct: 434 SQTVSGLKR 442 >gi|261837904|gb|ACX97670.1| flagellar hook protein [Helicobacter pylori 51] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRTLIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITHNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRTLIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|217034494|ref|ZP_03439905.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] gi|216943035|gb|EEC22514.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 41/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ N NI N + + V Sbjct: 1 MIRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|257871297|ref|ZP_05650950.1| flagellar hook protein [Enterococcus gallinarum EG2] gi|257805461|gb|EEV34283.1| flagellar hook protein [Enterococcus gallinarum EG2] Length = 312 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N V LF+ + N I V + + + Sbjct: 36 VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 95 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327 G ++ + D + + + ++ +D +S + Sbjct: 96 VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 155 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 Q + + + S+ N + L I+ K Sbjct: 156 VTGGQPVVYDDNFDENTALSGQETVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 215 Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 V G T +++ + S + + + V+ Sbjct: 216 QTFVMGKVGVATFNNPEGLEKVGGNNYVQTSNSGNPIVAGPGNNGAGTLQAGALEMSNVD 275 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L E + +I ++Y +++ I +D+MLQ LL + Sbjct: 276 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 312 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 12/180 (6%), Positives = 34/180 (18%), Gaps = 16/180 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50 S+L + N + + NI N + + + + Sbjct: 14 SMLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGL 73 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYIS 105 + + + ++ Q +S + + Sbjct: 74 GGINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDG 133 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 N + + + VV + N + + Sbjct: 134 AFVRDSNGTLTNSDGMQVLGRSVTGGQPVVYDDNFDENTALSGQETVSPLSIPSTLTVNG 193 >gi|261339376|ref|ZP_05967234.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288318177|gb|EFC57115.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 402 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 92/412 (22%), Gaps = 13/412 (3%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 S + SA + + + S ++ T Sbjct: 3 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++ DA+ + + + +VN T Sbjct: 63 DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPVA 122 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 Q Q IS + + T F+ N T Sbjct: 123 GTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNST----DTAPTKAFDATNPDTYN 178 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + D + N K A + +A L + S Sbjct: 179 KKGTVTVFDSQGNAHNMNLYYVKDATPANSWKVYAQDGSVAGSPVSLATTLTFNASGVLT 238 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 N Q + + + K Sbjct: 239 GGDNVNITT-------ATVPGATPATFAMSFANSMQQNTGANNIVATNQNGYKPGDLVSY 291 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ +Y + + +A N L N W S L Sbjct: 292 QINDDGSVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 81/396 (20%), Gaps = 9/396 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F + + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + VQ A K + ++ Sbjct: 116 LTGYPVAGTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNSTDTAPTKAFDATNPD 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + N+ V + Sbjct: 176 TYNKKGTVTVFDSQGNAHNMNLYYVKDATPANSWKVYAQDGSVAGSPVSLATTLTFNASG 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 ++ I V ++ A+ +++V QN V Sbjct: 236 VLTGGDNVNITTATVPGATPATFAMSFANSMQQNTGANNIVATNQNGYKPGDLVSYQIND 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + S + + + N + S + L GS + L Sbjct: 296 DGSVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N A DL + + A Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391 >gi|317014278|gb|ADU81714.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282 ++ +++ S + +R + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V + + + ++ N + L G S + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434 >gi|308063336|gb|ADO05223.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|15611871|ref|NP_223522.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|11386868|sp|Q9ZKY0|FLGE_HELPJ RecName: Full=Flagellar hook protein flgE gi|4155354|gb|AAD06366.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99] gi|307637557|gb|ADN80007.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996148|gb|ADZ51553.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997744|gb|ADZ49952.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282 ++ +++ S + +R + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 V + + + ++ N + L G S + Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAVFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434 >gi|154686045|ref|YP_001421206.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens FZB42] gi|154351896|gb|ABS73975.1| FlgE [Bacillus amyloliquefaciens FZB42] Length = 258 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 60/211 (28%), Gaps = 1/211 (0%) Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 + + +S + V + + + Sbjct: 48 TVAGGSNVTNSKQIGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYT 107 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 G ++ +L G + K+ + D Y D+ ++ Sbjct: 108 RAGNFGKDNQGNLVTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQ 167 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM-KSQVVFNHISESYSNTVGVNLQEELS 449 + + + + E S + + + Y V+L +E + Sbjct: 168 IGLVTFPNSAGLEKIGGNLYRESLSSGAASAVTTPGENGTGKLLAGYLEMSNVDLTDEFT 227 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I ++ + ++K+I +D++LQ L+ + Sbjct: 228 EMIVAQRGFQSNSKIITTSDEILQELVNLKR 258 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 12/182 (6%), Positives = 32/182 (17%), Gaps = 7/182 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57 +L + N + I NI N + + + V + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 58 ENKNMFDKVL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + A + + + + Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYTRAGNFGKDNQGNL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 L K + S + + + + + + Sbjct: 121 VTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQIGLVTFPNSAGLE 180 Query: 176 AI 177 I Sbjct: 181 KI 182 >gi|222100099|ref|YP_002534667.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] gi|221572489|gb|ACM23301.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] Length = 268 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 6/218 (2%) Query: 267 VPKGKIKALLQIRDSVVPIFQ---NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 K S +P + + A I + + + I Sbjct: 53 YQYVKNAGTPTAATSTLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQI 112 Query: 324 KDLDNKLCQGISETICVNPQ-YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + D ++ + V+ + + L ++ N++ + D Sbjct: 113 QLQDGRIAYTRDGSFKVDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGT 172 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + L N ++ S + Q F I + + V Sbjct: 173 IQQLGTITLVRFVNPSGLKSIGDNL--YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNV 230 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ E+ +I +++Y ++++I D+ML+T + Sbjct: 231 DVVREMVDMITAQRAYEFNSRVIQTADEMLRTATNVKR 268 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 51/215 (23%), Gaps = 27/215 (12%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------ 43 S++ A + + +I N+ N D Y + Sbjct: 7 SMMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAAT 66 Query: 44 TISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + P + V +A+ F ++ Sbjct: 67 STLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGRIA 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E + +L + V N + +++ +++ Sbjct: 121 YTRDGSFKVDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQQLGTIT 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 S L + D + T + D + + +D Sbjct: 181 LVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 215 >gi|92114098|ref|YP_574026.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] gi|91797188|gb|ABE59327.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 112/473 (23%), Gaps = 88/473 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F+++ + N AS Q +I NI N+ Sbjct: 2 GFSQSLSGVNAASSQLDTIGNNIANSQTVG--------------------------FKSS 35 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + Q L + ++ D +++N Sbjct: 36 SVQFADIFANSQGLGTRVAGKLQDFGTGSLETTGRGLDLAIAGDGFFQFTQNEQLAYSRN 95 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + AR + + + + +N + + Sbjct: 96 GQLSMSADGYFENAQGARLTDQQGEPLQVTQFSQGAQATTGVETAFNLNAETEALAPNNF 155 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + DQ D + ++ ++ + YT G +E Sbjct: 156 N----QDQSDTYSYVTNAGTVYDSLGVAHDMSLYYTKTGENDWEVRAA------------ 199 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + G + +S VP L L ++ D Sbjct: 200 -----------------LDGEMADGGAAQSISFNESGVPDVDTALSFNFGDLGNGSADFD 242 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 I + A +++ + + Sbjct: 243 NIEVDLAGTTQYGEAFELREFA---------------------------QDGNASGTFVG 275 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + +++ +Y + ++ +A L N W S + L Sbjct: 276 VEITENGEVLANYSNGNSEAVGTVGMANFRNPEGLEPQGDNL--WAATQESGAALLGQAG 333 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + V+L +EL +I ++++ +N I +L+T+ Sbjct: 334 TGQLGSLESGTLEASNVDLTQELVDMIIAQRNFQANNNAIQTQSDILETVTNL 386 >gi|317011083|gb|ADU84830.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 45/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + I++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTVNQYGMFEINNKDNKNIIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 39/436 (8%), Positives = 103/436 (23%), Gaps = 41/436 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSD 417 + ++S + + Sbjct: 401 DNYQDSAASIGVTVNQ 416 >gi|296102908|ref|YP_003613054.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057367|gb|ADF62105.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 402 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 94/412 (22%), Gaps = 13/412 (3%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 S + SA + + + S ++ T Sbjct: 3 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++ DA+ + + + +VN T Sbjct: 63 DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVA 122 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 Q Q I+ I T + + F+ N T Sbjct: 123 GTPSTVQTGANPQPIN----IPTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPDTYN 178 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 + D + N K A + +A L + + Sbjct: 179 KKGTVTVFDSQGNAHNMNLFYVKDATPANSWKVYAQDGSVAGSTASLATTLTFNNNGTLI 238 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 GN Q + + + K Sbjct: 239 GGGNINLTT-------ATIPGATPATFAMSFANSMQQNTGANNIVGTSQNGFKPGDLVSY 291 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ +Y + + +A N L N W S L Sbjct: 292 QINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/396 (9%), Positives = 81/396 (20%), Gaps = 9/396 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F + + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + VQ A K + ++ Sbjct: 116 LTGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPD 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + N+ V N Sbjct: 176 TYNKKGTVTVFDSQGNAHNMNLFYVKDATPANSWKVYAQDGSVAGSTASLATTLTFNNNG 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + + ++ A+ +++V QN V Sbjct: 236 TLIGGGNINLTTATIPGATPATFAMSFANSMQQNTGANNIVGTSQNGFKPGDLVSYQIND 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + S + + + N + S + L GS + L Sbjct: 296 DGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N A DL + + A Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391 >gi|308184654|ref|YP_003928787.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060574|gb|ADO02470.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 718 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434 >gi|295706277|ref|YP_003599352.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] gi|294803936|gb|ADF41002.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] Length = 263 Score = 83.9 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 2/126 (1%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G+++ ++ + + + +A N L + N Sbjct: 140 GNINIPSTSKSYSIGADGKVNIIDANGNISSNQTVELAKFANNEGLQKAGGNLFAQ--SV 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + S V+L EE + +I ++ + + ++I +D++LQ Sbjct: 198 NSGGPLVGAPGANGTGSFVSSALEMSNVDLSEEFTDMIVAQRGFQANTRIITTSDEILQE 257 Query: 475 LLEGVK 480 L+ + Sbjct: 258 LVNLKR 263 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 10/148 (6%), Positives = 26/148 (17%), Gaps = 13/148 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53 +L + N + + NI N + Y + T Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRD 109 ++ + ++ + + + Sbjct: 61 GVNAKQVGLGSQIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVRDGVTNYYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQN 137 + KT N + Sbjct: 121 DSSGNLVTGDGLYVQKTGGGNINIPSTS 148 >gi|297380070|gb|ADI34957.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|315586465|gb|ADU40846.1| flagellar hook protein FlgE [Helicobacter pylori 35A] gi|317182178|dbj|BAJ59962.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 718 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|268680907|ref|YP_003305338.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946] gi|268618938|gb|ACZ13303.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946] Length = 851 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 79/300 (26%), Gaps = 6/300 (2%) Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + DQ L + ++ + + GT T R M S Sbjct: 554 GTNFLTEDDQSLYLTVTGLTNSKNNISTNDSFTTSMSSIQGTLTSGTATRSTQSLYMASL 613 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 +++ + + +V L E + ++ Sbjct: 614 ASSTDIYDSLGSKHTIRFQYTKTGFTETGGTEWSVTVTVPEPGDINLGEEPKNVVTGSIR 673 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGIS----ETICVNPQYRSNPSFLRDGGSVSK 359 + + P ++ + + + S Sbjct: 674 FNSDGSLATYTPRNLTYTANNGSTANQIVQLNFGSVGQLDGITSFDKDSSTTNINQDGYT 733 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +I + + + ++ N L N +++ + S Sbjct: 734 GGDLSGLSVDETGTIIGSFTNGRSFALAQVAMSTFTNNGGLESDGGNC--YIQTSNSGDP 791 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + S V+L L+ LI +++ Y ++K I D+ML TLL+ Sbjct: 792 VFGQAGTGGKGSVQSSSLEMSNVDLSRSLTQLIVIQRGYQANSKTITTADEMLNTLLQLK 851 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/405 (5%), Positives = 75/405 (18%), Gaps = 32/405 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ NI N + Y + Sbjct: 1 MMRALWAGVTGLQAHQIAMDVESNNIANVNTTGYKYSRANFSNLLSQTVSIATAPQGELG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T + K + F + + D Sbjct: 61 GKNSMQIGLGTTISTVTKIFEQGSIETTDKDTDLAISGDGFFVV-----SPDGGTTYKYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + I+ + D + + + + +S Sbjct: 116 RNGDFSFDANGNFVDSNGYIIQGWLRDQETGQIDTTSPISNILITPGYTTPANATSIVSI 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 S +V + + D ++ ++N ++ + Sbjct: 176 KANLDSGTSVGTNKTSIYSLDSKSGWVDADNDGIMDA-------AEVHNEDDNADTIFNN 228 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + V + F+ ++ +I + + L + + Sbjct: 229 NTEVYERGVDFGVLFDSDGEALSLTDGQGTWISYAQAKTERIEVEADASDVTHLTMTING 288 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 I + + + +A + + I + + Sbjct: 289 TTITTGTTGISTSTYSTTTEKNEVVAAQIAALINAQTSVTGVTATITSGNYIVLSNDNST 348 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 ++ ++ + + S N Sbjct: 349 GTEASTKNIKMDVDTTATSASTGFVDTQIITAYQYTYSSSPTNTS 393 >gi|229544402|ref|ZP_04433460.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] gi|229324887|gb|EEN90564.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] Length = 254 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 61/236 (25%), Gaps = 1/236 (0%) Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 T +N ++ + + + + + + Sbjct: 20 DTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPGTSAQQVGLGSQIGSIDTVDTSGSP 79 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + D +N + + N G+ + Sbjct: 80 ESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDNRRLVNSEGFTVLGTNGQAITLG 139 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + D +A L + N N + + Sbjct: 140 ANVKSFSVATDGTITDQDGNTIGTISIATFQNPAGLTKVGGNLYTTTNSNA-GTVTVSQP 198 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I Y V+L EEL+ +I E+ + + ++I +D++LQ L+ + Sbjct: 199 GQNGAGTIKSGYLEMSNVDLSEELTNMIVAERGFQANTRIITTSDEILQELVNLKR 254 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 44/232 (18%), Gaps = 11/232 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENVTVVTQ 55 +L + N + +I NI N + Y + S T Q Sbjct: 1 MLRSLYSGVSGMKNFQTELDTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPGTSAQQ 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + S + F + NN+ Sbjct: 61 VGLGSQIGSIDTVDTSGSPESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDNRRL 120 Query: 116 KNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N + I V + + + I + Sbjct: 121 VNSEGFTVLGTNGQAITLGANVKSFSVATDGTITDQDGNTIGTISIATFQ-NPAGLTKVG 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 N + + Q K + + + ++ G Sbjct: 180 GNLYTTTNSNAGTVTVSQPGQNGAGTIKSGYLEMSNVDLSEELTNMIVAERG 231 >gi|254457547|ref|ZP_05070975.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1] gi|207086339|gb|EDZ63623.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1] Length = 705 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 48/445 (10%), Positives = 130/445 (29%), Gaps = 13/445 (2%) Query: 42 MTTISPENVTVVTQR-SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 I+ V + + + + A ++ + S +A + + +++ ++S Sbjct: 266 ELGIAGNAVNITAAAGATVAETANNYVSAINAQTAITGITASVDASQVITLINNNGSSSA 325 Query: 101 THYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 +H I+ S + S ++ + + + + +R + E + Sbjct: 326 SHNINLATVTSGSGLATGTSTTAHRYQYNTSSAASLAGGDKTFTSMADLRKWMEDEANNQ 385 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + S D +D + K S + S N + Sbjct: 386 GGATNGITIAVNDAGKFVIQNPNSGVDDYDMNLKVTAYTNKTSGSVVTSNTRFTRNMEAM 445 Query: 220 YT-----SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + S G ++ + ++ + + + ++ + + + + + Sbjct: 446 NSVLPKASGGQAFSQSFNAATHSSSIDIFDSLGSKHTLRMEFRKTALDTSTGSSWAMLVS 505 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + ++ I ++ N N+ D L G Sbjct: 506 VPAPATIDTTAPLDE----KTGSIRFNNDGSLATYNPPNISFSGNNGSAPDQQVSLSFGT 561 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + S S + L+ + + + +A Sbjct: 562 ANSFDGMTSFDSTSSTSGISQDGYTGGDLVGIRIDQSGTLVGSFSNGRSFGLAQIGMAKF 621 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 N L N +++ S + + I + V+L L+ LI + Sbjct: 622 TNNEGLSVEGGNI--FIQTANSGDPIIGTAATAGRGFIQAAALEASNVDLSRALTQLIII 679 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + + K I +D++LQTL+ Sbjct: 680 QRGFQANGKTITTSDQLLQTLIGLK 704 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/399 (6%), Positives = 86/399 (21%), Gaps = 4/399 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + + + + + Sbjct: 1 MLKSLFSGVSGLQSHQVAMDVESNNIANVNTTGFKYSRANFSDLLAQTKA--IATAPQGA 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + + N Sbjct: 59 LGGKNPVQVGLGSTISSMTRIFSQGSV--QNSDKNTDVAIQGDGFYIVSPDGGNTYKYTR 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G D V N + + + I+++ T + + + Sbjct: 117 AGDFKFDAGGNFVDNNGFVTQGWLRDPISGKVDSTAPITDINIPPGLTTPASASQEVVLK 176 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ ++ + + + + N + + +F V + ++ Sbjct: 177 ANLNSGPNVESFSPAYEIKTGTTNVQPAAIDANGNAISAGNIGVMFNEVGEAFSLQQDQG 236 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 V+ S+ + V+ ++ + ++ + E A + + + Sbjct: 237 VWVSFLSSSLTAGTVIANTAMDITFNIDPELGIAGNAVNITAAAGATVAETANNYVSAIN 296 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + I G + +V + I + + V Sbjct: 297 AQTAITGITASVDASQVITLINNNGSSSASHNINLATVTSGSGLATGTSTTAHRYQYNTS 356 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 G + + G +T+ Sbjct: 357 SAASLAGGDKTFTSMADLRKWMEDEANNQGGATNGITIA 395 >gi|255305280|ref|ZP_05349452.1| flagellar hook protein [Clostridium difficile ATCC 43255] Length = 331 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 80/261 (30%), Gaps = 8/261 (3%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + G P D+ + V + ++ + + G G ++ + R Sbjct: 79 DMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAAAGPLQGVKGGR 138 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + M + P A + P + ++ + K + Sbjct: 139 LVNGDGYMLVGQIMTGKYDANKGTFTPDAKPAAGWPNEPVVIPLQSISPKDGTVQNVLEY 198 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + L D +F++++ + + + N + + Sbjct: 199 NISKDGTIEFLLSD--GQRTQFVYDIPDNSEVGVVPNPAIATDSGKLQKVQTYAFQNPAG 256 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N + S + +I + V++ EE + +I +S+ Sbjct: 257 LDAEGGNL--FKPSANSGDPQIA----GATGNIIQGAIEASNVDIAEEFTEMIIASRSFQ 310 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K+I +D++LQ ++ + Sbjct: 311 ANSKIISTSDEILQEIINLKR 331 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/309 (7%), Positives = 65/309 (21%), Gaps = 14/309 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 ++ + + I N+ NA ++ + T S Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T + Q + + + Sbjct: 61 GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLS 168 + + + N + + + + + + + Sbjct: 121 DTGFKAAAGPLQGVKGGRLVNGDGYMLVGQIMTGKYDANKGTFTPDAKPAAGWPNEPVVI 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L ++ + LL + I N+ VV T Sbjct: 181 PLQSISPKDGTVQNVLEYNISKDGTIEFLLSDGQRTQFVYDIPDNSEVGVVPNPAIATDS 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + N + +E +F Q + I+ ++ + + Sbjct: 241 GKLQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNIIQGAIEASNVDIAEEFT 300 Query: 289 QLDEMARVL 297 ++ +R Sbjct: 301 EMIIASRSF 309 >gi|258514011|ref|YP_003190233.1| hypothetical protein Dtox_0696 [Desulfotomaculum acetoxidans DSM 771] gi|257777716|gb|ACV61610.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 263 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 24/272 (8%), Positives = 66/272 (24%), Gaps = 17/272 (6%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N+ + + + + V + Sbjct: 9 VSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAGGQVASGVTIAGINKDFT 68 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +G A D + + + + +D + + + Sbjct: 69 QGSQTATENSTDLYIHGNGFFIVQDPGDPSILYYTRDGSFHVDDTGQLVNSLGYKVCSSD 128 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + T+ ++ + S + + +N + N + + Sbjct: 129 GSTEIDPFTVPLDSINIDMNGKISYCTGGSTTPEDGGQIGLAMFNDLNRLINKGNNLYQY 188 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 D + + + + + V+L E Sbjct: 189 DNKPNTDGSDP-----------------AEPIFGAPGSIGLGTVISNNLEMSNVDLTNEF 231 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S +I ++ Y ++K+I +D+MLQ L+ + Sbjct: 232 SNMIITQRGYQANSKVITTSDEMLQELIGLKR 263 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 13/126 (10%), Positives = 27/126 (21%), Gaps = 11/126 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENVTVVTQ 55 ++ + N + I NI N + Y + + VT Sbjct: 1 MIRSLYSGVSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAGGQVASGVTI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 NK+ A ++ F +++ + Sbjct: 61 AGINKDFTQGSQTATENSTDLYIHGNGFFIVQD----PGDPSILYYTRDGSFHVDDTGQL 116 Query: 116 KNLSED 121 N Sbjct: 117 VNSLGY 122 >gi|254973919|ref|ZP_05270391.1| flagellar hook protein [Clostridium difficile QCD-66c26] gi|255091306|ref|ZP_05320784.1| flagellar hook protein [Clostridium difficile CIP 107932] gi|255312963|ref|ZP_05354546.1| flagellar hook protein [Clostridium difficile QCD-76w55] gi|255515722|ref|ZP_05383398.1| flagellar hook protein [Clostridium difficile QCD-97b34] gi|255648816|ref|ZP_05395718.1| flagellar hook protein [Clostridium difficile QCD-37x79] gi|260682035|ref|YP_003213320.1| flagellar hook protein [Clostridium difficile CD196] gi|260685633|ref|YP_003216766.1| flagellar hook protein [Clostridium difficile R20291] gi|306518931|ref|ZP_07405278.1| flagellar hook protein [Clostridium difficile QCD-32g58] gi|260208198|emb|CBA60542.1| flagellar hook protein [Clostridium difficile CD196] gi|260211649|emb|CBE01907.1| flagellar hook protein [Clostridium difficile R20291] Length = 327 Score = 83.9 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 71/261 (27%), Gaps = 12/261 (4%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + G P D+ + V + ++ + + G G +K + R Sbjct: 79 DMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGR 138 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + Q E P + I D + + I Sbjct: 139 LVNGDGYMLQGVIYDGEYKADTGEFIKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNIS 198 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + S + V + + F AG++ Sbjct: 199 KDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLD---- 254 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 A + S + +I + V++ EE + +I +S+ Sbjct: 255 ----AEGGNLFKPSANSGDPQIA----GATGNIIQGAIEASNVDIAEEFTEMIIASRSFQ 306 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K+I +D++LQ ++ + Sbjct: 307 ANSKIISTSDEILQEIINLKR 327 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 24/281 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + + I N+ NA ++ + T S Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + S NK+M + + + + + + S Sbjct: 61 GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + KN+ L + V+ + A + I+ K E + Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGVIYDGEYKADTGEFIKKGDAKGKEPIVIP 178 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220 L+ + V + +++ + L QR + I + + + + Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 T P ++ E N + ++ S I G + Sbjct: 239 IQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNI 279 >gi|283956177|ref|ZP_06373662.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 1336] gi|283792331|gb|EFC31115.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 1336] Length = 848 Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 36/340 (10%), Positives = 94/340 (27%), Gaps = 10/340 (2%) Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 D ++ +++ +++ F + I + + +++ + Sbjct: 511 MNDINQNVKVVVNSSGHFAISNANEDSTIPSGAGVNNGNAQNVAAKNMSFNITAYSNKEG 570 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T+ N+ ++ + L + + S + Q Sbjct: 571 TVSTNDAFTAIFKAWDGPLVTGGSIKESEQLKLSSFSAGLEIYDSLGSKHTLEVQFVKQS 630 Query: 269 KGKIKA--LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + I P N E +I + + + P Sbjct: 631 TTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGSARFNNDGSLASYTPKTISFSPNNGA 690 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCD 380 +S + + + + + + +++ + + Sbjct: 691 APNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTN 750 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +A + N L E N + S + + + S Sbjct: 751 GKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMS 808 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 809 NVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 848 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/428 (8%), Positives = 86/428 (20%), Gaps = 45/428 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGYVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSTNLYGLDSVHGYNTKTNKAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNS-YTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + ++ + GT L + I ++ YT + +F + N Sbjct: 233 GVDAGALFNAKGTGLNLRDGQGIWVSYADAKYTTNTGGQKVFDPNNTSTQNPVIFWGDKD 292 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 K L I + V IF + + + + + Sbjct: 293 NKVTLDITLNGVNIFNADIQSLDDAIA------YINTFTAPTDTREGTGVKAVKKSDGSG 346 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L + S + NV G ++ N + Sbjct: 347 IEFVNDNADGTTDNMKNIDLTVNSNNSAGEIQNVTYNQGQKKFEVAQMNTAKTNSAWISG 406 Query: 392 AGINTNVT 399 Sbjct: 407 DNNGKTGG 414 >gi|327441046|dbj|BAK17411.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 329 Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 73/237 (30%), Gaps = 13/237 (5%) Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T +G ++ ++ + R+ + + + ++ Sbjct: 106 DATDFVQGDPANGEPATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLVGFAGDVTAYDA 165 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 +P+ ++ T + Q + PS +R Sbjct: 166 INPLNAPGSG-----FEQNKPEVAGGTNLIDPATGELIAQGGTTPSPIRIP------TTA 214 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 +++ + + +A + L + N + S + + Sbjct: 215 QSMSISQDGSISFVDSAGDLQYAGTIVLAKFANSGGLEKTGSNY--FQTTPNSGAIYAQL 272 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +Q I+ + V+L EE + +I ++ + ++++I +D++LQ L+ + Sbjct: 273 ATQDGIGSINSGFMEMSNVDLSEEFTEMIVAQRGFQANSRIITTSDEILQELVNLKR 329 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/222 (7%), Positives = 39/222 (17%), Gaps = 32/222 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L + N + I NI N + Y + T+ + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNISNVNTYGYKKERTIFKDLISQTQSGASGPSTTRG 60 Query: 49 NVTVVTQ------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96 V + + + + + F + + Sbjct: 61 GVNAIQVGLGSQLAAIDTIHNAGAMQTTGRTLDLAISGDGFFMVADATDFVQGDPANGEP 120 Query: 97 ------NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 ++ + N L D N + + Sbjct: 121 ATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLVGFAGDVTAYDAINPLNAPGSGFEQNK 180 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 I L + + D Sbjct: 181 PEVAGGTNLIDPATGELIAQGGTTPSPIRIPTTAQSMSISQD 222 >gi|313905162|ref|ZP_07838531.1| flagellar hook-associated protein FlgK [Eubacterium cellulosolvens 6] gi|313470065|gb|EFR65398.1| flagellar hook-associated protein FlgK [Eubacterium cellulosolvens 6] Length = 668 Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 43/421 (10%), Positives = 124/421 (29%), Gaps = 29/421 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 A F A + S++ +N+ N + Y R++ T+ Sbjct: 5 TFAGFTTALSSLRANSKKLDVTGQNLANMTTEGYTRQEIKTSSLNYENPTSFYLNENDVN 64 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V++ D ++ +G + + + D+ ++ Sbjct: 65 VGFGVSIDRMAQLRDQFLDTQYRTQNAKLGYNETISASLDALSGLL-DETKQDAIHASFD 123 Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---- 159 K++++L ++ + + + FN +A ++ + I+ Sbjct: 124 KVQEALTKMQDPSRVNDPVYEGELRSRMQATANLFNQAALNIETSMRNEYNNIDGAGSSE 183 Query: 160 ---ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + LS++ +N IK + A + DQR++ + ++S+II I Sbjct: 184 NGYVDKINQLLSQIGELNVDIKRNQMLGNPALELQDQRNLAIDELSKIIPIEVSYFTEKY 243 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 + T + + ++ + E + ID + +++ P + L+ Sbjct: 244 ETTDRNGNTVVRDHGLNYDSYGNPTGKSGFPE--DLKIDLIYTTTDANGKNPVTQRITLV 301 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 D+ + + ++ + GN + + Q + Sbjct: 302 NGSDTRADNGDKVANYGSVKVLVDGNVAYDEHGNRMANATYDGKRNPDTGEVQQVQIVFN 361 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + N + + + + + + + + + Sbjct: 362 QADSYVVHMENGVLMDSNMNAATGQTTETSIKTDNHVEKDANGNITDFSTLRLGSGSLQA 421 Query: 397 N 397 + Sbjct: 422 S 422 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 37/398 (9%), Positives = 106/398 (26%), Gaps = 9/398 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + + D +P L + ++ + N + +V + V R Sbjct: 277 LKIDLIYTTTDANGKNPVTQRITLVNGSDTRADNGDKVANYGSVKVLVDGNVAYDEHGNR 336 Query: 144 EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 E+ ++ ++ ++ + + Q K Sbjct: 337 MANATYDGKRNPDTGEVQQVQIVFNQADSYVVHMENGVLMDSNMNAATGQTTETSIKTDN 396 Query: 204 IIGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + G + + + +S + + +D + + Sbjct: 397 HVEKDANGNITDFSTLRLGSGSLQASLDMLCDSTSSLNNDSIYRSYDYYMNRLDVLANTF 456 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 ++ ++ L+ + G+ + Sbjct: 457 ALDMNR-FNQMGVNDTYNNANTSKIVINGSAKDGTLLTADELTKLSNGDYNSSTFTSKDF 515 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + +++ + S G+ + D + ++ Sbjct: 516 LLLVNSGASNAADAQSASNITAANISISKSWINGTTHIGTYGDPNEGNSSTDTALNMLEA 575 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 T + +L + ++ + ++V+ + I + G Sbjct: 576 MGTTHAAI------GYKTYSNEINSISTYLANDAYNNENSLKSNEVILDGIYSAKDQISG 629 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L EE + ++ SYN + +L+ D+ LQTLL Sbjct: 630 VSLDEEAANMMSYVTSYNAAARLMTTIDETLQTLLNIK 667 >gi|322380221|ref|ZP_08054447.1| flagellar hook protein FlgE [Helicobacter suis HS5] gi|321147348|gb|EFX42022.1| flagellar hook protein FlgE [Helicobacter suis HS5] Length = 619 Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 6/299 (2%) Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + D +D L ++ + + L E + ++ T Sbjct: 324 ANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVST-STSRLTHAT 382 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + + G S G A++ +V ++ + ++ Sbjct: 383 HASSVDLVDSLGTKHSMRLEFYKTGGAEWRFRAIVPEPGEIVGSSPDRPNVFEEGVLHFN 442 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + N + L G + + + Sbjct: 443 KDGSLAGMNPPVLQFAPHNGSDSPQRITLSFGTAGGFDGITSVDKISETYAIEQNGYQAG 502 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 L+ + + + +A + L + E + S + Sbjct: 503 DLMDVRFDNDGVLLGSFSNGKTLSLAQVALANFANDAGLQADGGSVFS--ETSNSGKALI 560 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +S S + V+L L+ LI V++ + ++K + +D++L TLL + Sbjct: 561 GAANTGRRGGVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 619 >gi|317177302|dbj|BAJ55091.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 718 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 42/381 (11%), Positives = 103/381 (27%), Gaps = 4/381 (1%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE-VQKIRADADKEIELE 159 + L+ + I ++ Q T + + A+ K+ L Sbjct: 341 QAGTGAFANFLDGDKDVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + S +N F+ +K + + + ++ + S + ++ N + Sbjct: 401 DNYQDSAASIGVSINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGL 460 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ F T + + + S + + ++ Sbjct: 461 NTAS-LIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEP 519 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 +V + + + ++ N + L G S + Sbjct: 520 GELVGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFD 579 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + L+ + + +A + Sbjct: 580 GLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAG 639 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N S + + IS S + V+L L+ LI V++ + Sbjct: 640 LQALGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQ 697 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K + +D++L TLL + Sbjct: 698 ANSKAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSINQYGMFEINNKDNKNVIKEN 434 >gi|188527285|ref|YP_001909972.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143525|gb|ACD47942.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|308062194|gb|ADO04082.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] Length = 718 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 45/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + V Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANVVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 V G + + P L D D ++ + + Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + ++ + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 41/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A + + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANVVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|323492338|ref|ZP_08097491.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323313385|gb|EGA66496.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 398 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 26/254 (10%), Positives = 66/254 (25%), Gaps = 2/254 (0%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T +++ + +P D S G + Q Sbjct: 147 TDSMEFVANLDASASVVDQTVNPFDPNNTDSFNSSYTTKVFDSLGNSHTVTQYFTKTAAN 206 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++ + + + + I + + Q+ Sbjct: 207 SWEVNVQVDGGSTPASTVAMTFNADGTLATPTGSYNVAFPAAGANPMSIDINLAGSTQFG 266 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 ++ + + + + Y + ++ +A L + Sbjct: 267 ASFGVSTNNPNGYTSGELAGVRVEDNGMVYATYTNGQSQLQGQVVLADFANPQGLAKV-- 324 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + W + S + + + ++ V+L EL L+ +++Y + K I Sbjct: 325 SGTAWTQSFSSGAPIMGVPGSGTLGDLTPGALEGSNVDLTSELVNLMTAQRNYQANAKTI 384 Query: 466 MFTDKMLQTLLEGV 479 DK+ Q L V Sbjct: 385 STNDKLTQALFNAV 398 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 42/393 (10%), Positives = 90/393 (22%), Gaps = 7/393 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D ++Y + L Sbjct: 59 NFDKNGSVSGTGRAMDLAINGSGFFITKDTSGQLLYTRSGVFGTDKDNYVTGNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D ++ + + A + ++NL S + + Sbjct: 119 YSVDGNNNLLTGASGDIKISTSSLAAKATDSMEFVANLDASASVVDQTVNPFDPNNTDSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N+ ++ V G+T + T+ Sbjct: 179 NSSYTTKVFDSLGNSHTVTQYFTKTAANSWEVNVQVDGGST----PASTVAMTFNADGTL 234 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + +N S V N + Sbjct: 235 ATPTGSYNVAFPAAGANPMSIDINLAGSTQFGASFGVSTNNPNGYTSGELAGVRVEDNGM 294 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + L + D N + S + GS + L Sbjct: 295 VYATYTNGQSQLQGQVVLADFANPQGLAKVSGTAWTQSFSSGAPIMGVPGSGTLGDLTPG 354 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 DL + + + A + Sbjct: 355 ALEGSNVDLTSELVNLMTAQRNYQANAKTISTN 387 >gi|90422624|ref|YP_530994.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104638|gb|ABD86675.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 411 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 43/399 (10%), Positives = 87/399 (21%), Gaps = 1/399 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL V + S + +++ NI N + Y R T + + S + Sbjct: 1 MSLYGVMRTGGSGMTAQSNKLSAVADNIANVNTTGYKRASTEFSSLILKSGSGSYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + + A + +P + N + Sbjct: 61 ETQVRYAISDPGTLQYTTSATDLAIQGNGFFAVSNAGGTPFLTRAGSFVPDGQGNLYNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + N V + EV I A + + L+ + Sbjct: 121 GYYLMGYNLKNGPPNVVANGLTGLEVVNIGQTALEGNPSTKAAATANLNANAGITAGAPN 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T+ V L + + D T G NF Sbjct: 181 YTSKTSLVTYDNIGNKVTLDIYAYKTAANAWTMEVYDSADSTGGGFPYTGAPLATGNFSF 240 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S T + ++ GS D + + + Sbjct: 241 DVSATGKGRLAGGSPTSLSLTIPNGSPFTLDLSSMTQVAADFQFKATVDGNSPSSIDKVE 300 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ A ++ + + + + S + G Sbjct: 301 VATDGTMYAIYNDGTRIATYKIPLATVPSPDNLVPEVGNVYSIGINSGNVQVDFAGHSGL 360 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + A DL N + + + Sbjct: 361 GIVKAEALEASNVDLANELTAMIESQRGYTANSKVFQTG 399 >gi|288553056|ref|YP_003424991.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] gi|288544216|gb|ADC48099.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] Length = 279 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 23/278 (8%), Positives = 75/278 (26%), Gaps = 2/278 (0%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + G++ ++R+ + + T + + +I+ + + + + ++ Sbjct: 4 TLKGVTDMLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGAS 63 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 +G S + + + + + Sbjct: 64 GPVVNGRGGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDSETGGT 123 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + VN G + ++ + Sbjct: 124 TYYSRAGNFYLDEDGYIVNANGLYLLDDSDPGSRIQIAPDSQSFSIGQAGVVNVIDSAGQ 183 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + +A + L + N + + S + + + V Sbjct: 184 LTSPGTISLAYFSNPEGLQKEGDNL--YQVTDNSGAAQRTTPTNDGTGALVAGTLEMSNV 241 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 242 DLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 279 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 36/142 (25%), Gaps = 25/142 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 +L + N + I NI N + + + T + Sbjct: 11 MLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGASGPVVNGR 70 Query: 45 --ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P V + +Q + + L + ++ + L + + + Sbjct: 71 GGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDS----ETGGTTYY 126 Query: 102 HYISKLRDSLESYSKNLSEDIL 123 + Y N + L Sbjct: 127 SRAGNFYLDEDGYIVNANGLYL 148 >gi|2316082|gb|AAC45551.1| hook protein [Campylobacter coli] Length = 851 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 39/350 (11%), Positives = 97/350 (27%), Gaps = 7/350 (2%) Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + + Q ++ + ISN + T + H + Sbjct: 507 DNANPVFDANDINQAVKVVVTENGNFAISNANETSTRQANAGAGNAQVTTNPHAMSFNIT 566 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 +S +TI ++ + +V G + E+ ++ S + Sbjct: 567 AYSNKQGTVSTNDAFTTIFKSFDGPLVV---GGQIKESEQLKLSAFSAGLEIYDSLGSKH 623 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 ++ V + + + + + ++ + Sbjct: 624 TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLASYTPR 683 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY- 371 + + KL G S + S + + Sbjct: 684 TINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTQQDKQLMGYTSGNLKPDAIRVDD 743 Query: 372 -PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 +++ + + +A + N L E N + S + + Sbjct: 744 KGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRG 801 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 802 EMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 851 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 32/441 (7%), Positives = 76/441 (17%), Gaps = 48/441 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + D + Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDD-----------------QTIDSSRTPQ 155 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + + + K + R++ T + + Sbjct: 156 NIFIDPGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTG 215 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T TT V S DG + + A A + Sbjct: 216 TTQFYTTSKNAVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADAKFTTDKAAGTNVF 275 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D Q + + + G + D N Sbjct: 276 DPNSTAAQQANVIFWGNKDIAVNLDITLNGVKIQNANIRSLDEAIAYINTFTAPTDTRDG 335 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + + ++ G + Sbjct: 336 TGVKAVKKADGSGIEFVNDNADGTTDNMENIDLTVNSGNSAGEISTIAYNAATGAFSPQG 395 Query: 400 LLEYARNSIGWLEKNRSDSHD 420 L A+N+ W+ + Sbjct: 396 NLTTAQNNTSWITGTAQAVNR 416 >gi|308183024|ref|YP_003927151.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065209|gb|ADO07101.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 718 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 42/438 (9%), Positives = 112/438 (25%), Gaps = 26/438 (5%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122 D + SS + + + + ++ + + D + L++ + Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 +D ++V + + +AD +LR + + Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + +++ N ++ V ++ V + +N+ Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291 ++ +++ S + +R + + Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522 Query: 292 ---------EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + ++ N + L G S + Sbjct: 523 VGGSAARSNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + L+ + + +A + L Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + + IS S + V+L L+ LI V++ + ++ Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700 Query: 463 KLIMFTDKMLQTLLEGVK 480 K + +D++L TLL + Sbjct: 701 KAVTTSDQILNTLLNLKQ 718 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + ++ ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434 >gi|149178721|ref|ZP_01857304.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] gi|148842419|gb|EDL56799.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] Length = 563 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 51/561 (9%), Positives = 124/561 (22%), Gaps = 87/561 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49 M L + N + + + NI NA + + + T + Sbjct: 1 MGLTSALNTSLGGLSLNETSIDVLGNNIANAGTNGFKASNVLFTTQLSRTLSVGSRPTTS 60 Query: 50 VTVVTQRSENKNMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 R + ++ + D + Sbjct: 61 NGGTNPRQVGLGALSASIRKDFTQGSVTNSTSPSDLAIQGDGFFILDGPDGQVYSRNGNF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNF-------------NTSAREVQKIRADADK 154 + +S N S + +D +V + + VQ A Sbjct: 121 ELNSQSLLTNQSGFKVQGYGVDEDFNLVTTTLTDIEIPLGDLNVAQATQNVQVGGALLPT 180 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTAS----------------KHDAHDFLDQRDVLL 198 + + ++ + N + ++ L Sbjct: 181 GVLGTLGSILTTANLTDAGNANAAITGTTLLSDVEETIGTPLFTVGETLEFTPNKGGRSL 240 Query: 199 QKISEIIGISTIVRNNNDMVVYTSD-----------------GTTLFETVPRDINFEKMN 241 ++ ++ +T + D + T G T+ I Sbjct: 241 DPMTLLVTGTTTAADFADFMDRTLGIQNGSGIPNDATTGAQPGVTITGGGAFQIVGNSGT 300 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPK------------GKIKALLQIRDSVVPIFQNQ 289 + I DG +S + + + ++ + V Q+ Sbjct: 301 VNDIAVTIGNITSDGATISLPFTKSQSSNGESAITDFVIFDSLGEPVTMKMTSVLESQSS 360 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---------- 339 + + R + S + D S + + Sbjct: 361 NNTVFRYFLESADDNDGDIAVSNGTITFDSNGNVTNYTPNTFGISRVNTAADEMDVTLDL 420 Query: 340 ----VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + S + + + + + ++ + Sbjct: 421 SDISGISSASAGSTLKLTLQDGSDPGTLASFVIDETGIINGVFDNGIIRTLGQITLSRFS 480 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 LLE+ + + E S L I ++ L LI Sbjct: 481 NPQGLLEFGNS--TFQEGVSSGPPFLVTPGNFGAGTIRAGSIELSNTDVGRSLVDLIVAS 538 Query: 456 QSYNISNKLIMFTDKMLQTLL 476 +Y + ++I +++ LL Sbjct: 539 TNYRGNARVISSVQQLVDELL 559 >gi|154174192|ref|YP_001407320.1| flagellar hook protein FlgE [Campylobacter curvus 525.92] gi|112803531|gb|EAU00875.1| flagellar hook protein FlgE [Campylobacter curvus 525.92] Length = 819 Score = 83.5 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 37/366 (10%), Positives = 99/366 (27%), Gaps = 5/366 (1%) Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + N + + + + D + ++ ++N ++ E Sbjct: 459 TTNAAYKNAYDKAYTDTTGTASQKHAAGLAAINALIDINDGVKFTVNNAGQYQLENPSNG 518 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + K + +SE + ++TI++ + S G L + Sbjct: 519 EFDKALYMTTTGLTTEATGSSNANAAVSENVRLTTIMKALDGA---LSPGQALRNSGKLM 575 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ + S + + + + + + + D + Sbjct: 576 MSSHGSTAEIYDSLGSKHTVSIKWAKTGTTNDGGTEWSMIIQVPEPAKINYSGEGPDNVI 635 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + + L G+ + + S Sbjct: 636 TGSLRFNANGSLASFHPATFTFTANNGSQAGQNVSLNFGLGTDFNGLTSFDKDSSTESIS 695 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + +I + + + +A N L N Sbjct: 696 QDGYTGGTLRDIKIDETGTIIGAFTNGKSFGLAQVALATFTNNEGLQSEGGNVFSQ--TA 753 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + ++ S V+L L+ LI +++ + ++K I +D+ML T Sbjct: 754 NSGEAVIGAAGTGDKGTVAASKLEASNVDLSRALTDLIVIQRGFQANSKTITTSDEMLNT 813 Query: 475 LLEGVK 480 LL+ + Sbjct: 814 LLQLKQ 819 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 39/459 (8%), Positives = 104/459 (22%), Gaps = 37/459 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ + NI N + Y +P+ Sbjct: 1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGYKYNRANFADILSQTPRVATAPQGELG 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T S + L + F + + D Sbjct: 61 GQNPMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFF-----IVSPDGGTTRYYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV------QKIRADADKEI 156 N S I+ D + + V RA + +I Sbjct: 116 RNGDFVRDKAGNFVNNSGHIVQGWTRDEETGTIDSTGPIKNIVIKEGLTTPARATTEVKI 175 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + + T + ++ + D + L+ T +N Sbjct: 176 KGNLDSGNTIGARSTPIYSLDSVAGGRDYNNNGIKDNGEDHLENDVNNNQFYTNSKNEQV 235 Query: 217 MVVYTSDGTTLFETVPRDINFEKM---NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + D L++ + + ++S P I + G Sbjct: 236 LTERGVDLGVLYDELGNGLALRNNQGIWVSYANAKSTPFDIGDAPGGTTTGQINSPTGAT 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 +++ + + N + ++ V ++ + +E G + ++ + Sbjct: 296 LDIELNGTKITSAPNAMKNISDVAAAINAQYNKTGVQAEISNGNKLTLINRNNSGTIAST 355 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + ++ + LR ++ + + A Sbjct: 356 KNIHL---TVNGNDGTGLRSTKIITAYQYTYTSSQTNAVHGYDDTIPRKVTTTEDLREAM 412 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 ++Y + I + L + + Sbjct: 413 QEDARNHVDYNGDGIIKNSTTAAAEVTLVKAANQTTDQA 451 >gi|330818585|ref|YP_004362290.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] gi|327370978|gb|AEA62334.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] Length = 414 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 45/469 (9%), Positives = 91/469 (19%), Gaps = 60/469 (12%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + AS I NI NA+ + T Sbjct: 6 GLSGLQGASNDLDVIGNNIANANTTGFKAATAQFTDM----------------------- 42 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 ++ ++ + + ++N + Sbjct: 43 ------------YANSVSSAVANGIGIGTQLAAVAQVFQQGGFTTTQNPLNMAINGNGFF 90 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 T ++ + A+ Sbjct: 91 QVTNNGVTTYTRDGTFN--------------ADKNGNIVNAAGAQLMGYAVNANGVINTG 136 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 L ++ S + N + F + T T Sbjct: 137 ALVPLTAPQGNLAPKATSSITGQFNLSTS---------DTSQSSTAAFNPNDPTTYTLHQ 187 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + D + S N K ++ + G G Sbjct: 188 SVPAFDSLGNSENVDLYFVKSTTTGSWEVWAGANGAAPQDMGTAKFDSSGKLIGTVGTDG 247 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 N V F S N ++ Sbjct: 248 NPTAVTNTFALAVNNTNGATAQTININLSGSTQFGASKSGVANLNADGYPTGTLNSYSVG 307 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + Y ++ V N L N +++ + S + + Sbjct: 308 ADGTIQGIYSNNQTLTLGQVVVVNFNNPQGLTSIGGNQ--YIQTSASGVPQVGVPGSTNH 365 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S + +L EL LI ++ Y + + I + QTL+ Sbjct: 366 GTLKGSTTEASTTDLTGELVNLITAQRDYQANAQTIKTQQAVDQTLINL 414 >gi|310641552|ref|YP_003946310.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309246502|gb|ADO56069.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 272 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 17/203 (8%), Positives = 54/203 (26%), Gaps = 3/203 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + L + + + G+ + + L I + Sbjct: 70 GSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEAPYLTRAGDFHIDGNRHL 129 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + G ++ +++ ++ N V + L Sbjct: 130 VTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGETDNATKIGVTKVINPEGL 189 Query: 401 LEYARNS---IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 + + + + I V+L E + +I ++ Sbjct: 190 EKIGGSLYRATVNSGNEGEITAMEANSADDGTGAIISGQLEMSNVDLTGEFTEMIVAQRG 249 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + ++++I +D++LQ ++ + Sbjct: 250 FQANSRIITTSDEVLQEVVNLKR 272 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/189 (8%), Positives = 39/189 (20%), Gaps = 8/189 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + + M + S + Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGASASGEE-- 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S Q L + ++ + + + D N ++ Sbjct: 59 ------TAGSNAKQIGLGSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEA 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T + ++ + I L +S+ + + Sbjct: 113 PYLTRAGDFHIDGNRHLVTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGET 172 Query: 183 SKHDAHDFL 191 Sbjct: 173 DNATKIGVT 181 >gi|207108617|ref|ZP_03242779.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 294 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ N + L G S + + + Sbjct: 117 NNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQA 176 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 L+ + + +A + L N S Sbjct: 177 GDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTGN--SGQAL 234 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + IS S + V+L L+ LI V++ + ++K + +D++L TLL + Sbjct: 235 IGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 294 >gi|319649558|ref|ZP_08003714.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] gi|317398720|gb|EFV79402.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] Length = 268 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 58/225 (25%), Gaps = 2/225 (0%) Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 +S GS G I S + + + G + V Sbjct: 46 SQTISGATGSGENSGGINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQ 105 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + L + + + + ++ Sbjct: 106 RGNNTYYTRAGNLYLDDDANLVTASGDKIKGADGAAIQLNGGDATVIKSLSISNDGTINF 165 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + + +A N N L + N S + + Sbjct: 166 LIDGNDTLQAAGPIGIARFNNNGGLEKIGDNLYKD--TVNSGDAVPLTPGEDGAGILVSG 223 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EE + +I ++ + + ++I +D++LQ L+ + Sbjct: 224 TLEMSNVDLSEEFTEMITAQRGFQANTRIITTSDEILQELVNLKR 268 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 16/207 (7%), Positives = 42/207 (20%), Gaps = 13/207 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53 +L + N + I NI N + Y + + Sbjct: 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVNFKDMVSQTISGATGSGENSG 60 Query: 54 TQR----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ + + NN+ L Sbjct: 61 GINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQRGNNTYYTRAGNLYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++ S D + + + + I+ + Sbjct: 121 DDDANLVTASGDKIKGADGAAIQLNGGDATVIKSLSISNDGTINFLIDGNDTLQAAGPIG 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV 196 + N+ + + D ++ D Sbjct: 181 IARFNNNGGLEKIGDNLYKDTVNSGDA 207 >gi|305432574|ref|ZP_07401735.1| flagellar hook protein FlgE [Campylobacter coli JV20] gi|304444285|gb|EFM36937.1| flagellar hook protein FlgE [Campylobacter coli JV20] Length = 847 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 36/351 (10%), Positives = 93/351 (26%), Gaps = 5/351 (1%) Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 + + + Q ++ + ISN + A+ + + Sbjct: 500 DGNGSSGYDANDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAGVAT-TNPKNMS 558 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 K + + + G + E+ ++ S + Sbjct: 559 FNITAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSK 618 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 ++ V + + + + + + ++ + Sbjct: 619 HTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSLASYTP 678 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + KL G S + S + + Sbjct: 679 RTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVD 738 Query: 372 --PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 +++ + + +A + N L E N + S + + Sbjct: 739 DKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGR 796 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 797 GEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 847 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/420 (6%), Positives = 92/420 (21%), Gaps = 38/420 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + + E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ ++G L + I ++ T+ + +NQ + + G Sbjct: 233 GVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTATDGANGVFNENSQTNQQNVIFWGNK 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + + ++ + + + + ++ + G+ + Sbjct: 293 DSAVNLDITLNGVNIQNANIRSLDEAIDYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 ++ N + + + WN +N + +S + Sbjct: 353 DNADGTTDNMKNIDLVVKQTNTAGERFRVTWNQQNQNFTAVTVKANGNSAWITGGAPGLT 412 >gi|260767923|ref|ZP_05876857.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260615953|gb|EEX41138.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 398 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 2/249 (0%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + N +P + S + G + Q Sbjct: 152 FVANFNASADAIDQTVYPFDPADPNSFNSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVN 211 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++ S + + + I ++ + Q+ ++ Sbjct: 212 VQVDGAATASATVPVTFNTDGTLSSPTGSFNVAFPAAGANAMSIDVSLTGSTQFGADFGV 271 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + G + Y + ++ +A L + + W Sbjct: 272 STNNPNGYTSGELAGVRVEGNGMVYATYTNGESQLQGQVVLANFANPQGLAKV--SGTAW 329 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + ++ V+L EL L+ +++Y + K I DK Sbjct: 330 TQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLTSELVSLMTAQRNYQANAKTISTEDK 389 Query: 471 MLQTLLEGV 479 + Q L + Sbjct: 390 LTQALFNAI 398 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/400 (9%), Positives = 93/400 (23%), Gaps = 22/400 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D + ++Y + L Sbjct: 59 NFDKNGSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D + ++ + + + ++N + + Sbjct: 119 YSVDGSNNLLSGSVGDIKISTSSLSAKATDSLEFVANFNASADAIDQTVYPFDPADPNSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N ++ V T TVP N + S Sbjct: 179 NSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVNVQVDGAATASATVPVTFNTDGTLSSPT 238 Query: 246 TS-------------------ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 S + F VS+N + G++ + + +V Sbjct: 239 GSFNVAFPAAGANAMSIDVSLTGSTQFGADFGVSTNNPNGYTSGELAGVRVEGNGMVYAT 298 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + +P + + + + Sbjct: 299 YTNGESQLQGQVVLANFANPQGLAKVSGTAWTQSFSSGSPTVGVPGTGTLGDLTPGALEG 358 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + L N + A + + Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTEDKLTQALFNAI 398 >gi|27378811|ref|NP_770340.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27351960|dbj|BAC48965.1| flgE [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 55/481 (11%), Positives = 125/481 (25%), Gaps = 61/481 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A + + SQ + I NI N+D Y M Sbjct: 1 MSLTGALSSAISALSAQSQSLSMISDNIANSDTTGYKTTSAMF----------------- 43 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D ++ A S+A + + S ++ + S + S Sbjct: 44 ---DALVTASSNATSYASGGVTVSGRANITQQGLLAATSNATDVAIQGSGFFAVSNSTSG 100 Query: 121 DILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + T + ++ R DAD + S V + + Sbjct: 101 GTISYTRNGAFTINNAGYLENNGNYLEGWRTDADGNVVGNESASNLTAINTQVASTSGSA 160 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 T + ++ + ++ + T+++++ + + Sbjct: 161 TTKT----------------------TVAANLPSDAATGDTYTSSMTVYDSLGAANSMQV 198 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T T+ + F + S + A+ D + + Sbjct: 199 TWTKTGTNTWSASFANPTSTSDTTTATGTASGTIAITFNSDGSLASTSPSPATVVVTGWT 258 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + I N V + + + Sbjct: 259 DGAADSSITLNLGTVGKTDGLTQYASGETTP----------------SVNVTSIDSDGLS 302 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + VA L + S + Sbjct: 303 YGKLSSVSIGKDGVVDATYSNGQTIAIYKIAVATFADPNGLSARSDGIYS--ATVTSGNA 360 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L + I S + + + S +I +Q+Y+ ++++I +KM TL+ + Sbjct: 361 ALQASGENGAGTIYGSELESSTTDTSSQFSSMISAQQAYSAASQVISTVNKMYDTLISAM 420 Query: 480 K 480 + Sbjct: 421 R 421 >gi|315179626|gb|ADT86540.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 398 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 2/249 (0%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + N +P + S + G + Q Sbjct: 152 FVANFNASADAIDQTVYPFDPADPNSFNSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVN 211 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++ S + + + I ++ + Q+ ++ Sbjct: 212 VQVDGAATASATVPVTFNTDGTLSSPTGSFNVAFPAAGANAMSIDVSLTGSTQFGADFGV 271 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + + G + Y + ++ +A L + + W Sbjct: 272 STNNPNGYTSGELAGVRVEGNGMVYATYTNGESQLQGQVVLANFANPQGLAKV--SGTAW 329 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + S S + + ++ V+L EL L+ +++Y + K I DK Sbjct: 330 TQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLTSELVSLMTAQRNYQANAKTISTEDK 389 Query: 471 MLQTLLEGV 479 + Q L + Sbjct: 390 LTQALFNAI 398 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 70/281 (24%), Gaps = 3/281 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D + ++Y + L Sbjct: 59 NFDKNGSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D ++ + + + ++N + + Sbjct: 119 YSVDGNNNLLSGSVGDIKISTSSLSAKATDSLEFVANFNASADAIDQTVYPFDPADPNSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N ++ V T TVP N + S Sbjct: 179 NSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVNVQVDGAATASATVPVTFNTDGTLSSPT 238 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 S + G S S + A + + + Sbjct: 239 GSFNVAFPAAGANAMSIDVSLTGSTQFGADFGVSTNNPNGY 279 >gi|283478787|emb|CAY74703.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM 12163] Length = 512 Score = 83.2 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 45/341 (13%), Positives = 90/341 (26%), Gaps = 4/341 (1%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 ++ + IS + + +S A + D + + Sbjct: 171 NKLVGVNVSQQDGGSYSISIGNGISLVQGDRFEQLAAVPSSADPARTTIANVDSVTGAKT 230 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 EI + ++ + D + + + + T D Sbjct: 231 EIAESQFTSGSLGGLLAFRHDLEGVRNQIGQLALALGSSFNTQHQAGVDSDGDKGEAFFK 290 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 G+ SV D A + + + D Sbjct: 291 LGNPSAMSNSLNKGNASLSVAYDASKTGDVKASNYKMTLENGSWNVVRLSDNSKVKDVDT 350 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D K ++ ++ SV N+ + A +S Sbjct: 351 STDGTLKFDGLTVTVGATGTAQNNDSYIIKPVSSVISGMSVNITDAAKLAASSPTGGESN 410 Query: 383 NKNF----IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 N+N IN TL + + + + S + V ++ + Sbjct: 411 NENVKSLLGLQTQDLINGKSTLTQAYASLVADVGNKTSSLEATNTTQSAVVKQLTSQQQS 470 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 GVNL EE S L + +Q Y + +++ + Q+LL V Sbjct: 471 VSGVNLDEEYSNLARYQQYYMANAQVLQTASTLFQSLLTAV 511 >gi|325524325|gb|EGD02427.1| flagellar hook-associated protein FlgK [Burkholderia sp. TJI49] Length = 599 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 41/423 (9%), Positives = 99/423 (23%), Gaps = 3/423 (0%) Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 +K+ + + S + Q + S + + S + + Sbjct: 176 ADKSYQLAAVTSPSDPSELTVVSQGIAGANPPGQNQYLSDASLSGGTLGGLLAFRSQTLD 235 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ LG A V N ++ + + ++ + Sbjct: 236 PAQAQLGAIATSFA-AQVNAQNALGIDLSGNVGGKLFAVGTPTVYANQQNKGDAALSVSF 294 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + + ++ + + D Sbjct: 295 TDASQPTTGDYTLSYDGTQYTLTDRASGSVVGTSKSMPASIGGLDFSFSSGAMSAGDQFT 354 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + + +++ + I V Sbjct: 355 VLPTRGALDGFGLATSNGSAIAAASPVVSSAVSTNAGTATITQGAVSAGYQAPSTTLTYD 414 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 S S AG + + G + + P + Sbjct: 415 AASKSLSGFPAGTTVTIAGTPPQQVTITDPSTPVPYDPSVGATLTMSGTAPGAINGVTVS 474 Query: 358 SKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + Y N ++ + + + N VTL + + + Sbjct: 475 LSGAPADGDQFKIGPYAGGTNDGTNALALSKLVSAKSFGNGTVTLTGAYASYVNNIGNAA 534 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I+ S + GVN EE + L++ +Q Y + K+I + QT+ Sbjct: 535 SQLKSSSAAQTALVGQITASQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 594 Query: 476 LEG 478 L Sbjct: 595 LGL 597 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 40/391 (10%), Positives = 118/391 (30%), Gaps = 10/391 (2%) Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT + + L+ + G S A + I+ L+ Sbjct: 2 VTVQRQYSQYLSDQLNTAQTQGGALSTWYSLVAQLNNYVGSPTA--GISTAITNYFTGLQ 59 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + N ++ + +T + NA+ + + ++ +R + ++ +S + + +++ Sbjct: 60 NVANNAADTSVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINAYTAQIAQ 119 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N I ++ + +DQRD+ + +S + G+ + ++ V+ + G L Sbjct: 120 LNQQIAAASSQGQPPNQLMDQRDLAVSNLSGLAGVQVVRNSDGY-SVFLAGGQPLVVADK 178 Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + S+ +++ G + LL R + Q Sbjct: 179 SYQLAAVTSPSDPSELTVVSQGIAGANPPGQNQYLSDASLSGGTLGGLLAFRSQTLDPAQ 238 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL +A + ++ + + G + Q + ++ Sbjct: 239 AQLGAIATSFAAQVNAQNALGIDLSGNVGGKLFAVGTPTVYANQQNKGDAALSVSFTDAS 298 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 D + + + A + S + + + ++ + Sbjct: 299 QPTTGDYTLSYDGTQYTLTDRASGSVVGT--SKSMPASIGGLDFSFSSGAMSAGDQFTVL 356 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + + + + S + Sbjct: 357 PTRGALDGFGLATSNGSAIAAASPVVSSAVS 387 >gi|157165263|ref|YP_001467845.1| flagellar hook protein FlgE [Campylobacter concisus 13826] gi|112801725|gb|EAT99069.1| flagellar hook protein FlgE [Campylobacter concisus 13826] Length = 814 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 2/152 (1%) Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 L G+ + + S N + +I + + + Sbjct: 665 SLNFGLGTDFNGLTSFDKDSSTESISQDGYTGGTLNDLKIDETGTIIGAFTNGQSFGLAQ 724 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N L N S + I+ S V+L L Sbjct: 725 VALASFTNNEGLQSEGGNVFSQ--TANSGEAVIGAAGTGDKGTIAASKLEASNVDLSRAL 782 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI +++ + ++K I +D+ML TLL+ + Sbjct: 783 TDLIVIQRGFQANSKTITTSDEMLNTLLQLKQ 814 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 51/242 (21%), Gaps = 31/242 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ + NI N + + +P+ Sbjct: 1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGFKYNRANFADILSQTPRVATAPQGQLG 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T S + L + F + + D Sbjct: 61 GQNAMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFFVV-----SPDGGTTRYYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV------QKIRADADKEI 156 N S I+ D+ + + + V RA + +I Sbjct: 116 RNGDFVRDKAGNFVNNSGYIVQGWTRDDETGTIDSTGPISNIVIKEGLTTPARATTEVKI 175 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + T + + L+ +V + + T RN Sbjct: 176 KGNLDSGNSIGQRSTPIYALDSVAGGRDFNNDGILNANEVHNENDTNNDEFYTNSRNEQI 235 Query: 217 MV 218 + Sbjct: 236 LT 237 >gi|289523332|ref|ZP_06440186.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503024|gb|EFD24188.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 262 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 2/200 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 V +L +R++ + + F + D + + + Sbjct: 65 GVQVGLGTRLIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTRDGTWHVDG 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q ++ +L + + + D +A L Sbjct: 125 DGQIVTSNGYLLEPQIAIPEDTVEITVSPTGEVYARQAGDVEPDEIGQIELARFVNPQGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 +N +LE S L + F + + V + EE+ +I +++Y Sbjct: 185 RAMGKNL--FLETPASGFPILGQPGEEGFGTLRQGALEMSNVQVVEEMVSMIVSQRAYEA 242 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K I D++LQ + Sbjct: 243 NSKTIQTADELLQIANNLRR 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 10/172 (5%), Positives = 28/172 (16%), Gaps = 23/172 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ I N+ N + Y + Sbjct: 1 MIRALWSGATGMIAQQSNLDVISNNLANVNTTGYKKIRAEFEDLIYQIGREPGAPVEPDS 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHY 103 P V V + + + Sbjct: 61 MIPTGVQVGLGTR----LIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + +L + + V + + + D + + Sbjct: 117 DGTWHVDGDGQIVTSNGYLLEPQIAIPEDTVEITVSPTGEVYARQAGDVEPD 168 >gi|225849135|ref|YP_002729299.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] gi|225644492|gb|ACN99542.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] Length = 266 Score = 83.2 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 52/229 (22%), Gaps = 34/229 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + I NI N + + R Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDIRDPGVLSSTQN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L + + F ++ + Sbjct: 61 RVPAGIQIGLGVKVSDVAKI---FSQGSLIKTDNPLDLAIQGDGFFKIE------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIE 157 + E Y N L + +A E V+ + +V +R ++ Sbjct: 112 EAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVINISVSPNGKVVVVRNSGGQQTT 171 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 E+ +++ + AI +A + D +I Sbjct: 172 EEVGDIKLYRFMNQAGLKAIGQNLFKYTEASGEPIEGDPNTDGFGKITQ 220 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 2/164 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + + DG + + + S + +V Sbjct: 100 DGFFKIEMPDGSEAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVINISVSPNGKV 159 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + + L +N + S + F Sbjct: 160 VVVRNSGGQQTTEEVGDIKLYRFMNQAGLKAIGQNLFKY--TEASGEPIEGDPNTDGFGK 217 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 I++ + VN+ EE+ LI +++Y +++K I+ D+ML+T+ Sbjct: 218 ITQGFLEASNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLRTV 261 >gi|308173591|ref|YP_003920296.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|307606455|emb|CBI42826.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|328553477|gb|AEB23969.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] gi|328911732|gb|AEB63328.1| flagellar hook protein [Bacillus amyloliquefaciens LL3] Length = 258 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 22/256 (8%), Positives = 69/256 (26%), Gaps = 2/256 (0%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP- 284 +L+ + NF+ + +N + + + + Sbjct: 4 SLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQIGL 63 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + ++ + I G + + + Sbjct: 64 GAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNLVTT 123 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 GG ++ ++ + N + + L + Sbjct: 124 DGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGLEKIG 183 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + + + + + Y V+L +E + +I ++ + ++K+ Sbjct: 184 GNLYRE-SLSSGAASAVTTPGENGTGKLLAGYLEMSNVDLTDEFTEMIVAQRGFQSNSKI 242 Query: 465 IMFTDKMLQTLLEGVK 480 I +D++LQ L+ + Sbjct: 243 ITTSDEILQELVNLKR 258 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 12/182 (6%), Positives = 32/182 (17%), Gaps = 7/182 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57 +L + N + I NI N + + + V + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 58 ENKNMFDKVL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + A + + + + + Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 L K + S + + + + + Sbjct: 121 VTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGLE 180 Query: 176 AI 177 I Sbjct: 181 KI 182 >gi|256376465|ref|YP_003100125.1| hypothetical protein Amir_2339 [Actinosynnema mirum DSM 43827] gi|255920768|gb|ACU36279.1| protein of unknown function DUF1078 domain protein [Actinosynnema mirum DSM 43827] Length = 276 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G K + +++G ++ + + +A L + + + Sbjct: 153 GLTVDKGTYTSFSVSGDGTIVGVLANGTPRTVGQIAMANFANPGGLDKAGGSF--YRATV 210 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + V+L +E + LI ++ + ++K+I +D++LQ Sbjct: 211 NSGPVQIGGAGDNGTGAVVSGALEMSNVDLSQEFTNLIIAQRGFQANSKVITSSDEILQD 270 Query: 475 LLEGVK 480 L+ + Sbjct: 271 LMNLKR 276 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 14/167 (8%), Positives = 29/167 (17%), Gaps = 33/167 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + Q NI N + + T+ + Sbjct: 1 MLRSLFSGISGLRAHQQMMDVTGNNISNVNTTGFKSSQTVFEDTLSQTLRAAQAAGANTA 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + + + Sbjct: 61 ATNPAQVGLGVRTAGINTNFNQGTTQS----------TGRNTDMLIQGDGFFVVNSSGQQ 110 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 L + IL + + A V +N + V Sbjct: 111 LYTRAGALSFDAAGQLTTPAGGILQGWMANGAGVVDKNQPVAGLTVD 157 >gi|283953666|ref|ZP_06371197.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414] gi|283794707|gb|EFC33445.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414] Length = 864 Score = 83.2 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + ++ + + + + + +D ++ I++ ++ F Sbjct: 492 LNTDVRTFRTTEDLRELLQRDARYGVDYDGSGTFATSDINQNIKVVVTADGHFAISNANE 551 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230 + + A + + + + T+ N+ ++ + L + Sbjct: 552 QSTVPANAINGVAAPTTTNPKTMSFNITAYSDRQGTVSTNDAFTSIFKAFDGPLVVGNQI 611 Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 + S + + + V + S G + + IR Sbjct: 612 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 671 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + +++G+ + + S + + N+ + T N S+ S Sbjct: 672 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 731 Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G + + + + +++ + + +A + N L E Sbjct: 732 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 791 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + + S V+L L+ LI +++ Y ++K I Sbjct: 792 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 849 Query: 466 MFTDKMLQTLLEGVK 480 +D+MLQTL++ + Sbjct: 850 STSDQMLQTLIQLKQ 864 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 33/449 (7%), Positives = 99/449 (22%), Gaps = 45/449 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GQNPLQIGLGVSVNSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFVDPGMHIPAAQSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + ++ + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSIHGWNNRTSRSEDENDTGTTQFYTTSKNSLDVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ + G L + I ++ T++ D + + + Sbjct: 233 GVDAASLFNAKGQGLNLRDGQGIWISYADAAYSTNKVGQSAFDPNLQQNQTAAFWGTPAQ 292 Query: 273 KALLQ-------IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 K L I+++ + + + + + + ++ G I + Sbjct: 293 KVNLDITLNGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTGVRAVKSKDGSGINFINTN 352 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 D + + V + + + ++ F +N AG +IN S Sbjct: 353 SDGTTDNMKNINLVVAGTNTAGELWNAVWNAQNQTFTFNNGQGAGNTPVINKNNSSLWTA 412 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ + Sbjct: 413 DTVTFTPPPPAAANTVQLNGALNAQVITA 441 >gi|213029312|ref|ZP_03343759.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 167 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + N T + + + S V + + + GVNL EE L + Sbjct: 82 VGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 141 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +Q Y + +++ + + LL Sbjct: 142 YQQYYLANAQVLQTANALFDALLNI 166 >gi|90418365|ref|ZP_01226277.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] gi|90338037|gb|EAS51688.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] Length = 388 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 8/284 (2%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + + + + + G L + + + G Sbjct: 107 SFVQRTETIGGKETTFLVNTAGYRLTGSPVGGGAAAPIELPVGAIVAPKATDAGAFTIQF 166 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 SA K+ + + DS+ + +D G G Sbjct: 167 PESAAVGDTKKSSMVVYDSIGKAIEVPVDMEKTAANTWTVSYTDSGGPQTTTIVFDPNTG 226 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL------AGYPDLIN 376 + + S N A L Sbjct: 227 RPTAAPANMTYTHVNGDTVDIEFGSLTEYATDFSSKLVTNGNPPGSFTGFAFAENGTLSG 286 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 +A + L A N S L + + S Sbjct: 287 VMNTGQLIPLYEMSLARFASPDQLQASAGNVYS--ATASSGVAALGGPGTNGYGSLVSSG 344 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EL+ +I+ ++SY+ ++K+ ++L L+ + Sbjct: 345 LEQSNVDLASELTSMIESQRSYSANSKVFQTGAEILDVLVNLKR 388 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 32/292 (10%), Positives = 68/292 (23%), Gaps = 5/292 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ VF + + N + + +++ NI N+ Y R T + Sbjct: 1 MSINGVFRTSVSGMNAQANRLSTVSENIANSSTNGYKRNSTEFASLVLAQGGGEYNPGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDSLESYSKNLS 119 + + +I + E+ + Sbjct: 61 KTQVRQSISQQGSIAATSSGSDLAIQGDGFFVVQDTAGREFYTRAGSFVQRTETIGGKET 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 ++ V +A ++ + E V D K Sbjct: 121 TFLVNTAGYRLTGSPVGG--GAAAPIELPVGAIVAPKATDAGAFTIQFPESAAVGDTKKS 178 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-FETVPRDINFE 238 ++ + + + +S D T P ++ + Sbjct: 179 SMVVYDSIGKAIEVPVDMEKTAANTWTVSYTDSGGPQTTTIVFDPNTGRPTAAPANMTYT 238 Query: 239 KMNSYTVTSESNPIFIDGVVVSSN-QGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +N TV E + SS + P G + + N Sbjct: 239 HVNGDTVDIEFGSLTEYATDFSSKLVTNGNPPGSFTGFAFAENGTLSGVMNT 290 >gi|94263193|ref|ZP_01287010.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456411|gb|EAT06531.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 619 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 51/184 (27%), Gaps = 4/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 I + +D E P + Y + S L Sbjct: 438 IEEINYRDAAGAEPETNPELARIFGPEGSAFAVTESRDNDLQPLRTTNYATASSTLSQQQ 497 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + +A L + + Sbjct: 498 DGFGEGYLQDISINPDGTMVGRYSNQQSFEQAQVMLADFADYRGLEP--TSHNAYKATAM 555 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + + F + + V+L E S LI ++ + ++K I D++ TL Sbjct: 556 AGEPTIGVAGEGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTL 615 Query: 476 LEGV 479 + Sbjct: 616 MRLK 619 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 38/446 (8%), Positives = 91/446 (20%), Gaps = 24/446 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52 MSL + + N+ S A + NI N + +Y + Sbjct: 1 MSLHNMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + KN L + + + F M + + + + LE Sbjct: 61 SQVAAITKNFRPGDLETTNQSTDMAISGKGFF-----MVNNPLADEMLYTRDGQFK--LE 113 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + T + + + + E+S+ R + Sbjct: 114 KSAITPEGYYNLATPAGHLVQGRNLAANGGA------DNLGDILIQEVSDPRATGNVSLA 167 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N K H D + + ++ + Sbjct: 168 MNLQSKPGREDAQPLHSSWDGAAAEPLAADRYDYRTIMQAFDDQGRQFDLTVYFDQTEHD 227 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 F + + +G + + L ++ + + Sbjct: 228 NQREFLVTHDPALDRRLRQ-DGEGRYNDGEEPETGAGALLYGKLNFSNTGELMDIEAWEV 286 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A + E + + + T+ + + Sbjct: 287 PADGNLEPQEENKLPRDPQSGLHSFAFNLSGQGDNLTSTIDFGATVSTRTVSSGGGAKVD 346 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G+ + Y + F G +T + L Sbjct: 347 GSGATAANVSAMTTWDQVYDSQGRQVKEGDQLTFSGVDGNGAAATLTYQVDFSERVEDLL 406 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438 ++ Q + Sbjct: 407 SRLEETFACAAFIQG--GQLELHALE 430 >gi|257866386|ref|ZP_05646039.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257873098|ref|ZP_05652751.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257875999|ref|ZP_05655652.1| flagellar hook protein [Enterococcus casseliflavus EC20] gi|257800344|gb|EEV29372.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257807262|gb|EEV36084.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257810165|gb|EEV38985.1| flagellar hook protein [Enterococcus casseliflavus EC20] Length = 312 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N V LF+ + N I V + + + Sbjct: 36 VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 95 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327 G ++ + D + + + ++ +D +S + Sbjct: 96 VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 155 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 Q + + + S+ N + L I+ K Sbjct: 156 VNGGQPVVYDDNFDENTALSGQDAVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 215 Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 V G T +++ + S + + + V+ Sbjct: 216 QTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNPIVAGPGNNGAGTLQAGALEMSNVD 275 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L E + +I ++Y +++ I +D+MLQ LL + Sbjct: 276 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 312 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 12/180 (6%), Positives = 35/180 (19%), Gaps = 16/180 (8%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50 S+L + N + + NI N + + + + Sbjct: 14 SMLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGL 73 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYIS 105 + + + ++ Q +S + + Sbjct: 74 GGINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDG 133 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 N + ++ + VV + N + + Sbjct: 134 AFVRDSNGTLTNSDGMQVLGRSVNGGQPVVYDDNFDENTALSGQDAVSPLSIPSTLTVNG 193 >gi|238927475|ref|ZP_04659235.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] gi|238884757|gb|EEQ48395.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] Length = 680 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 48/418 (11%), Positives = 119/418 (28%), Gaps = 12/418 (2%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A + G L A ++ + + + S + +L++ + + Sbjct: 275 INGSATATITRTGATSLTSGTYAFGDVFNISGKITSVVSSPPSDVVLTLDANNTITPGTV 334 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + V + +T +++ + ++ + I T+ Sbjct: 335 VTVKVPNPNSFTYAVGDTYTGQLKVTSLTPQTGATVTTADGNSV-----KLAAPIPAITS 389 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D +Q I+ + + +V+ T G+++ V +D Sbjct: 390 AAATYAHTGSATDGTIQSITRESVYQFGGKTVSSVVLNTKSGSSIDGLVGKDYARNDTFY 449 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 +V + G S L V + Sbjct: 450 PSVATTITVYDSLGAKHSVPVVFTKASNNKWTLSLGSGGDTFNITEADGTTTTVALTKTD 509 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 K +G+ + + I S + Sbjct: 510 LKFDTSGSYVSGTASLSLTYENGAAPQQVAMNLAAITQYSG----TSTIAADSDGHAAGT 565 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + Y + + +A N L + N + E N S + + Sbjct: 566 LASVDIDSTGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTIS 623 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S + ++ S V+L ++ S +I ++ + ++K+I +D+ML+TL+ + Sbjct: 624 GASDIG-TELTTSALEMSNVDLADQFSDMIITQRGFQSNSKMITVSDEMLETLINMKR 680 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 37/447 (8%), Positives = 91/447 (20%), Gaps = 21/447 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ A + + + NI N + + Sbjct: 1 MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASAPNGTIG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +L+ + S + + + + Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDIAISRGDGLFVVSKGQQKFYTRNGAFS 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 E S + + + N + + + + + S Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVISVAGDNTTNIRIPAGKSMEAQTT-------ATAS 173 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +N + +G + +N + S Sbjct: 174 YTKNLNATTPGYEVANVLVRYADGTTQTTNSYAPSEVGKLVLTMDNGRKIYLDSSAPAQT 233 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 VT+ + + + S S+ + A I + + Sbjct: 234 VGSAPTGTLYSSTISNVTASTTGHVDAVLAMDSGNPSSPKEINGSATATITRTGATSLTS 293 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 V S ++ +V A+ + + Sbjct: 294 GTYAFGDVFNISGKITSVVSSPPSDVVLTLDANNTITPGTVVTVKVPNPNSFTYAVGDTY 353 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + S++ + V G + + G T+ T+ R S+ Sbjct: 354 TGQLKVTSLTPQTGATVTTADGNSVKLAAPIPAITSAAATYAHTGSATDGTIQSITRESV 413 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISES 435 S L+ KS + + Sbjct: 414 YQFGGKTVSSVVLNTKSGSSIDGLVGK 440 >gi|78776233|ref|YP_392548.1| flagellar hook protein FlgE [Sulfurimonas denitrificans DSM 1251] gi|78496773|gb|ABB43313.1| Flagellar hook FlgE [Sulfurimonas denitrificans DSM 1251] Length = 718 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 43/449 (9%), Positives = 102/449 (22%), Gaps = 17/449 (3%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 I+ ++N + ++A +S G + +++ N S Sbjct: 275 QITTNGGLAGNTAADNAARYVSAINAQTSVTGIIATYSGGF--INLANSNSDINASHNIR 332 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVV--------QNFNTSAREVQKIRADADKE 155 I+ + ++ S + D V ++ Sbjct: 333 INAVGNANSGLVVGDSATTAYRYQYDPTGAVTVAGGDKKFTTIADLREALENQARAVGNL 392 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + + D+ + + I G Sbjct: 393 DADATPDENNI-EIKINAQGKFELSNPGGSQDGDYDINLSITGMNANSITGGGITENTKF 451 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + T + + + + S + + V Sbjct: 452 TRNMEALNATLPAGSTGKAFSQSFNAATHSASIDIFDSLGSKHTLRTEFRKVAVDASTGS 511 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 VP F + + P I Sbjct: 512 SWNMKISVPEPATIDSVAPYNEKTGFVRFNSDGSLATFNPPNVSFTANNGSAANQQVAIK 571 Query: 336 ----ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + + S + + LI + + + + Sbjct: 572 LGTSNSFDGMTSFDSKSATSGISQDGFTGGDLVGIRIDQSGTLIGSFSNGRSFGLAQIGM 631 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 A N L N +++ S + + + + V+L L+ L Sbjct: 632 AKFTNNEGLSTEGGNV--YVQTANSGDPIIGTAATAGRGFMQAAALEASNVDLSLALTQL 689 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +++ Y + K I +D++LQTL+ + Sbjct: 690 IIIQRGYQANGKTITTSDQLLQTLIGLKQ 718 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 39/420 (9%), Positives = 86/420 (20%), Gaps = 27/420 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + + NI N + Y + Sbjct: 1 MLKSLFAGVSGLQSHQVAMDVESNNIANVNTVGYKYSRANFSDLLAQTRAIATAPQGELG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T S + + F + + D N Sbjct: 61 GKNPVQVGLGATVSSMTRIFSQGSVQNSDKNTDVAIQGDGFFII-----SPDGGNTYKYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + I+ + D A V + Sbjct: 116 RAGDFKFDAGGNFVDNNGFIVQGWLRDRATGFVDATAPITNINIPPGLTTPASPTQHVVI 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 S V + ++ S + + G ++ N++ Sbjct: 176 KANLNSGPLVKTYSPAYEVKSYPTGTPLPNPEAIDENGNPIDSGNMGVLFNDSGEAFNLQ 235 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 G ++ + E + + +D + + G A R Sbjct: 236 TGQGIWASFTPTKTAATAGVAAGAVELDITLELDDGTLKQITTNGGLAGNTAADNAARYV 295 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 Q + + G F + + + + ++ L G S T Sbjct: 296 SAINAQTSVTGIIATYSGGFINLANSNSDIN-ASHNIRINAVGNANSGLVVGDSATTAYR 354 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 QY + GG + +++ D+ + IN Sbjct: 355 YQYDPTGAVTVAGGDKKFTTIADLREALENQARAVGNLDADATPDENNIEIKINAQGKFE 414 >gi|331667483|ref|ZP_08368347.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271] gi|331065068|gb|EGI36963.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271] Length = 164 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 33/106 (31%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + + + + + + + + V + Sbjct: 58 AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 117 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S + GVNL EE L + +Q Y + +++ + + L+ Sbjct: 118 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 163 >gi|322378470|ref|ZP_08052922.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321149114|gb|EFX43562.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 718 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 6/299 (2%) Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + D +D L ++ + + L E + ++ T Sbjct: 423 ANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVST-STSRLTHAT 481 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + + G S G A++ +V ++ + ++ Sbjct: 482 HASSVDLVDSLGTKHSMRLEFYKTGGAEWRFRAIVPEPGEIVGSSPDRPNVFEEGILHFN 541 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + N + L G + + + Sbjct: 542 KDGSLAGMNPPVLQFAPHNGSDSPQRITLSFGTAGGFDGITSVDKISETYAIEQNGYQAG 601 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 L+ + + + +A + L + E + S + Sbjct: 602 DLMDVRFDNDGVLLGSFSNGKTLSLAQVALANFANDAGLQADGGSVFS--ETSNSGKALI 659 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +S S + V+L L+ LI V++ + ++K + +D++L TLL + Sbjct: 660 GAANTGRRGGVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 38/479 (7%), Positives = 95/479 (19%), Gaps = 40/479 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K L F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVI-----SPDRGVTRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160 + ++ V D + ++ T ++ + + I+ + Sbjct: 116 TRSGEFLFDANGSLVTTGGYVVQGWVRDPKDMGSKDSETDMLKIDNTKPLQNIRIDPGMV 175 Query: 161 --SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ++ +N D + K + + Sbjct: 176 MPARSSSKITMRANLNAGRHADQVGNVFMLDSSTKTPADGIKPQYDSATNLTQMAEDMGS 235 Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 ++ DG N + + +SN + ++G +S + SA Sbjct: 236 LFNEDGDAFLLNEDQGIWVSYKNASMKKAILSSKDSNTLELNGTKISFSNDSATTHITSL 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 A + + V + + ++ + A + Sbjct: 296 AAAKNAINAVKNKTGVEAYIDDGQLRLENKNSLEGDEHVKNIVVTHAGTGAFANFAKGDQ 355 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387 + ++ N+ S + Sbjct: 356 SITAFRYRYTKGIDADSTTGQFKTTEDLRALMQHDANIVKNPSLAKSYKDSAASVSVKIN 415 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + I N ++ SD ++ ++ + GV+ Sbjct: 416 NHGMFEIANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVSTST 474 >gi|315639349|ref|ZP_07894511.1| flagellar hook protein [Campylobacter upsaliensis JV21] gi|315480675|gb|EFU71317.1| flagellar hook protein [Campylobacter upsaliensis JV21] Length = 839 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 43/395 (10%), Positives = 102/395 (25%), Gaps = 9/395 (2%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV----IDNAEEVVQNFNTSAREVQKI 148 + N+P + + ++ N T + + + + Sbjct: 447 NQGNLNTPGTPENNYQLAMNGSLLNTQARTFRTTEDLRELLQRDARYGVDYDGSGGFEAN 506 Query: 149 RADADKEIELEISN-LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 +D ++ + + I+ +S K HD + ++ Sbjct: 507 GSDVNEGVTITITENGNFSISNPNKTTTPPAGINNPKRTNHDLNFNVTAYTDALGKVSTN 566 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + + G+ E+ ++ S N ++ V Sbjct: 567 DAFTKIFKAFDGVQTVGSQKKESEQLKLSAFSAGLEIFDSLGNKHTLEVQFVKQTTTQDG 626 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + + + + + ++ + N + + + Sbjct: 627 GNEWQMIIRVPEPAEINTTGDGPSNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQQ 686 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL--INHYCDSFNKN 385 KL G S S + + + + + Sbjct: 687 IKLSFGTSGANDGLVSSSSASTLTNQATDGYTSGNLKPDAIRVDDKGHILGEFTNGKTFA 746 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 +A + N L E N S + + + S V+L Sbjct: 747 VAKIAMASVANNSGLEEIGGNLFKVTGN--SGNIVVGEAGTGGRGEMKTSALEMSNVDLS 804 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI V++ Y ++K I +D+ML TLL+ + Sbjct: 805 RSLTQLIVVQRGYQANSKTISTSDQMLNTLLQLKQ 839 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/423 (7%), Positives = 82/423 (19%), Gaps = 38/423 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATVPTENLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 ++ + + + F + + D Sbjct: 61 GQNPLQIGLGTSINSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + E Sbjct: 113 YLTRSGDFKLDAAGNFVNNAGFVVQGWNINWDDQSIDTSRSPKNLFIDPGLHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVND-------AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 ++ S L + N K + + + + Sbjct: 173 VAIKANLNSGLNIGNAARPLYALDSVHGFNKKTGETKDENDTGTTQFYTTSKNSMEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ +G L + I NS T + N D + + Sbjct: 233 GVDAGSLFNGNGQGLNLREGQGIWVSYANSTFSTDKGNSNVFDPNNKTQQANVIFWGDQN 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 K ++ +N + I + A + + Q Sbjct: 293 KPVIMDITLNGVQIRNDNIKSLDEAIAYINTFTNPADGRDGTGVIATKKEDGSGITFTNQ 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + T + G + + N +L + +K + Sbjct: 353 NSNGTTDNMKNIDLQINTGNQAGELQTVPVTNGNFNWNAMNLNSLAAQGDSKWIAGNFAN 412 Query: 393 GIN 395 N Sbjct: 413 NGN 415 >gi|170288994|ref|YP_001739232.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] gi|170176497|gb|ACB09549.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] Length = 261 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 2/133 (1%) Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + L ++ N++ + D + + L N Sbjct: 131 SNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPSGLKSIGDNL 190 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++ S + Q F I + + V++ E+ +I +++Y ++++I Sbjct: 191 --YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMITAQRAYEFNSRVIQT 248 Query: 468 TDKMLQTLLEGVK 480 D+ML+T + Sbjct: 249 ADEMLRTATNVKR 261 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 47/217 (21%), Gaps = 33/217 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + + +I N+ N D Y + Sbjct: 1 MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +A+ F ++ Sbjct: 61 SLPTGLYVGHGVRTAATTRI---FTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGR 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E + +L + V N + +++ +E+ Sbjct: 112 IAYTRDGSFKIDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGT 171 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 S L + D + T + D + + +D Sbjct: 172 ITLVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 208 >gi|157415947|ref|YP_001483203.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81116] gi|157386911|gb|ABV53226.1| hypothetical protein C8J_1629 [Campylobacter jejuni subsp. jejuni 81116] Length = 852 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/350 (10%), Positives = 95/350 (27%), Gaps = 7/350 (2%) Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + + Q ++ + ISN + T + + + Sbjct: 508 DNATPTFDANDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNIT 567 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 +S + I + + +V G + E+ ++ S + Sbjct: 568 AYSNKQGTVSTNDAFTKIFKAFDGPLVI---GNQIKESEQLKLSAFSAGLEIYDSLGSKH 624 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 ++ V + + + + + ++ + Sbjct: 625 TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPK 684 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY- 371 + + KL G S + S + + Sbjct: 685 TINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDD 744 Query: 372 -PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 +++ + + +A + N L E N + S + + Sbjct: 745 KGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRG 802 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 803 EMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 33/428 (7%), Positives = 91/428 (21%), Gaps = 38/428 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ ++GT L + I ++ T +N + ++ Q + V Sbjct: 233 GVDAGALFNANGTGLNLRDGQGIWVSYADAKFTTDRANGANVFDPNLTVAQQNNVIFWGN 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 K + D + + Q D + + A A D Sbjct: 293 KDIAVTLDINLNGVRIQNDNIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFV 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + + + + + N + + + N A Sbjct: 353 NNNADGTTDNMKNIDLTVNVGNSAGERNTINYNANTGVFSPQGGNLTTAQNDTDWIAGAA 412 Query: 393 GINTNVTL 400 + Sbjct: 413 QAGQPQNV 420 >gi|118474252|ref|YP_891218.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] gi|118413478|gb|ABK81898.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] Length = 546 Score = 82.8 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 57/547 (10%), Positives = 146/547 (26%), Gaps = 70/547 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51 ++ + + + + I +I N + Y + SP Sbjct: 1 MMIGYYNGISGIKSGNFGIDVISNDISNINTVGYKSSTAEFKSILYQSLNQTSTSPVTSQ 60 Query: 52 VV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH------ 102 + T + + N L + F L + N Sbjct: 61 IGLGSTSMATSLNFKPGSLQNTDKVFDLAIVGDGFFGLSGINGEQYFTRNGDFSKDVNGD 120 Query: 103 -------YISKLRDSLESYSKNLSEDILGKTVIDN------------------------- 130 Y+ +L + + + + + ++ N Sbjct: 121 IVNRNGLYLLGTMANLNAIALSPNAEQKLGNLMGNNDKQAFTLQTGTSIELSASTAQTKI 180 Query: 131 -----------AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 A V + + + + + + + ++ +N ++ Sbjct: 181 HLPDVLFLPATATTDVSFSGNLDSTINTQTININLDNTKITTAINKEGKTIS-LNGSLAD 239 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP----RDI 235 ++ D + E I + N + + D +L ++ Sbjct: 240 TPLVQNPNSPNEDVLITIKDANGESITTAAKTDENGNFSLNDFDIRSLNLDGELSIEANV 299 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 N ++ T + ++ I +G + + S Sbjct: 300 NLKQEVPNTQSFSTDIISPNGNKNILKMEFSKQVPHLDNGTAWNVSATIFSPTNEVISTS 359 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF-LRDG 354 + +F+EK + N+ A+ +L + + + + L Sbjct: 360 NGVLNFNEKGALVSNTLGTLDNDGAELNVNLGTPYDPNTPNSGFDGMRSTGDQNLNLSVN 419 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + L + +++ + + + + N L + + N+ + Sbjct: 420 KNGEAEGLLKEYTMNDNGEVVAIFDNGKMASVAKVALYHFQNNQGLSKSSENTYQTTANS 479 Query: 415 RSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 VV+ I S V+L L+ LI ++++Y+ S K I +D+M+Q Sbjct: 480 GQPIFYQDQNGNVVYGAAIKNSTLEMSNVDLGVSLTDLIIMQKAYDASAKSITTSDQMIQ 539 Query: 474 TLLEGVK 480 + K Sbjct: 540 KAINMKK 546 >gi|330899410|gb|EGH30829.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 96/268 (35%), Gaps = 5/268 (1%) Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 T+ R + D L + ++ + + + +D + ++ Sbjct: 5 GTGTTLSDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLAD 62 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ++ + + ++ + + A + FN+ + ++ + + +++ + Sbjct: 63 FFTKMQGIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNEL 122 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + L +N I +A + LD R +++++E++G+ + N N + + + Sbjct: 123 TTTLASLNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSL 182 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + ++ S + + ++ S + G I LL+ R+ V+ Sbjct: 183 VSGGTSYKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPA 239 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENV 314 N+L A VL + + +S+ Sbjct: 240 TNELGRTAMVLSDQVNSQMNQGIDSKGN 267 >gi|15022422|dbj|BAB62243.1| flagellar protein [Treponema medium] Length = 280 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 14/219 (6%), Positives = 42/219 (19%), Gaps = 14/219 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56 ++ + N + I NI N + + R R Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60 Query: 57 -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + S Sbjct: 61 GVNPKEVGLGVMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N + + + + E ++ + + + ++I+ + + Sbjct: 121 DKDGTMVNPANGMRVQGWMAQ-EVDGTRLINTSAQTEDLIIPIGQKIDARATTSVNYACN 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 L + + E ++ Sbjct: 180 LDKRLPELPENANRAQVLESTWTTEFKVYDTFGETHELN 218 >gi|182412221|ref|YP_001817287.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] gi|177839435|gb|ACB73687.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] Length = 261 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + I+ D + +N Q + S Sbjct: 81 VFTQGQLTSTGEKLDLAIQGDGFFEIQRPDGTFAYTRDGSFKLNAQGQVVTIDGLPVLSG 140 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + +A + + V L N + E S Sbjct: 141 FQAIPAGTEGVAISDNGQVTLTGANGTTTFRLSVTRFANPSGLRSVGGNL--YEETAASG 198 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ + + I + Y + VN+ EE+ LI +++Y I++K I +D+MLQ + + Sbjct: 199 TPEIGQPGEQGYGQIMQGYIESSNVNIVEEMVNLIVAQRAYEINSKSIQTSDEMLQNVAQ 258 Query: 478 GVK 480 + Sbjct: 259 MKR 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 40/209 (19%), Gaps = 28/209 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 + A +I N+ N + + R T S Sbjct: 1 MNLSLYSAATGMEAQQLNLNTIANNLANVNTPGFKRSKIEFQDLLYQKPTRASGTDSGGG 60 Query: 50 ---------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + +K L + + F ++ Sbjct: 61 NIVPTGLEVGNGSRVAATSKVFTQGQLTSTGEKLDLAIQGDGFFEIQ------RPDGTFA 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + + + +V A+ L + Sbjct: 115 YTRDGSFKLNAQGQVVTIDGLPVLSGFQAIPAGTEGVAISDNGQVTLTGANGTTTFRLSV 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + +V + + AS Sbjct: 175 TRFANPSGLRSVGGNLYEETAASGTPEIG 203 >gi|288960286|ref|YP_003450626.1| flagellar hook protein [Azospirillum sp. B510] gi|288912594|dbj|BAI74082.1| flagellar hook protein [Azospirillum sp. B510] Length = 871 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 46/440 (10%), Positives = 121/440 (27%), Gaps = 4/440 (0%) Query: 43 TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + S N + + + ++ + + +L + S + Sbjct: 434 LGSTVTASSAGNILSIQANAVNTNVTSSATVTNSSTAVNTMSSLPSVSSVAGVRQSRTVT 493 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 D Y+ +++ + + + A ++ A Sbjct: 494 LTGTPGDIGTQYTLSINGTAVTYSTTGEEMTMEDITAALANKINSNTALPVTATAQGGVI 553 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + T + +D DV S + S + + N T Sbjct: 554 TVTAKTAASPTGTNTMTGTGTITFNGSSIDVGDVYTITDSGGVPHSLTITDANAGTYNTP 613 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRD 280 + N+ T + + V + SA+ L + Sbjct: 614 AKVMQYFATVVPGATASGNTLTAAGATGTVVDAPVAQFTLDQSAIAGQTPAHIGLTFGKS 673 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + S + AG+ V + + Sbjct: 674 PETVGTLTNISTALVGTGSAVSAANQSAGSDATVTFTVDYGFGPQQITLNLGKYQKPGGL 733 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 S + R + + + + ++ +Y + +K P+ N L Sbjct: 734 TQFAGSEINVSRLIQNGAPRGQFKDVVFGDGGAVMVNYDNGRSKMIARVPIITFNNPNAL 793 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + +LE + + + + + + V++ +E + +I ++SY+ Sbjct: 794 QRESGGV--FLESEDAGKPNFNDPETNGAGAVVANSVESSNVDIADEFTKMIVTQRSYSA 851 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 + K++ +D+MLQ +L + Sbjct: 852 NAKIVTTSDEMLQEVLGLKR 871 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 57/467 (12%), Positives = 119/467 (25%), Gaps = 28/467 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ A N S+ I NI N+ Y R D+ + V Sbjct: 1 MSIFGSMTTAVLGLNAQSKALGHISDNIANSSTIGYKRVDSAFETMVLQSSQRLHEPGGV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA------------LKEMMSADDHYNNSPT 101 T + N L S Q F + L + + + ++ Sbjct: 61 TAQPVFMNSIQGSLTQVQSPTNIAIQGQGFFSVSKVNVQNSTSTLVQTQTGAVNSSSVYY 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELE 159 Y N S L ++D V++ + +V + A I+LE Sbjct: 121 TRAGDFELDKSRYLVNSSGYALNGWLVDPVTGVLKKDQVAPVQVSSLIDKPVATSTIDLE 180 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + V + +I + + R S + +N V Sbjct: 181 ANLPATPTPGKKVPDSSIPIFDSQGNPRTVNFKWRQQAD---SSWRMVLETPGSNTKPVD 237 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV--SSNQGSAVPKGKIKALLQ 277 T G + ++I + + +G + S G +L Sbjct: 238 GTFSGNPATVSFGQNIAGQTAVAQVNVVTIAGSNTNGQDNLRIGDTYSVKVDGTNYSLKV 297 Query: 278 IRD--SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 D + + +A + + +A +S + + Sbjct: 298 TADNIGSIRTYSGLAGALANQINSASPAASVLATSSGQTIRVTARNPGTPFKLNTDVVSG 357 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 +++ + G + K + G IN + Sbjct: 358 TNTTNTIVAQTSTAATASAGEIDKFQFPQTQVEVGDSFTINVNGTPISYTVTAATYQSYP 417 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 T ++ I + + + N ++ + +++ V Sbjct: 418 TVSDVVSQLAGKINQALGSTVTASSAGNILSIQANAVNTNVTSSATV 464 >gi|147678415|ref|YP_001212630.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274512|dbj|BAF60261.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 269 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 10/251 (3%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I F+ + I + G + + + + Q Sbjct: 28 NVNTIGFKGSRANFQDVLYQTIRFGSAGSDNTGGVNKSQVGLGVTVASITNNTGPGGMQS 87 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 L + + + ++ + +G +DN ++ N Sbjct: 88 TGRDLDLAINGNGWFMVKPDASQDEVYYTREGTFYIDN-NGYLVNSNGYYLLDVSGNTIQ 146 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 G S + +N +A L N + Sbjct: 147 FPSEGVASINISKDGIIS------YTPLGGEMVENAFQIGLAMFPNQDGLERVGSN--TF 198 Query: 411 LEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 E S + + I+ Y V+L +E + +I ++ Y + + I TD Sbjct: 199 KESLTSGAALDEKTPNSGGLGTINSGYLEMSNVDLTDEFTNMISTQRGYQANARTITVTD 258 Query: 470 KMLQTLLEGVK 480 +M++ LL + Sbjct: 259 QMIEELLALKR 269 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 21/262 (8%), Positives = 60/262 (22%), Gaps = 24/262 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L + + + I NI N + + + + Sbjct: 1 MLRSLYAGASGLRSHQTRMDVIGNNIANVNTIGFKGSRANFQDVLYQTIRFGSAGSDNTG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V VT S N + + + + +K D + Sbjct: 61 GVNKSQVGLGVTVASITNNTGPGGMQSTGRDLDLAINGNGWFMVK----PDASQDEVYYT 116 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 Y N + L + + + + I + E+ + Sbjct: 117 REGTFYIDNNGYLVNSNGYYLLDVSGNTIQFPSEGVASINISKDGIISYTPLGGEMVENA 176 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + L+ + + + + ++ D + I++ +++ + Sbjct: 177 FQIGLAMFPNQDGLERVGSNTFKESLTSGAALDEKTPNSGGLGTINSGYLEMSNVDLTDE 236 Query: 223 DGTTLFETVPRDINFEKMNSYT 244 + N + Sbjct: 237 FTNMISTQRGYQANARTITVTD 258 >gi|27904804|ref|NP_777930.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372207|sp|Q89AH7|FLGG_BUCBP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|27904202|gb|AAO27035.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 260 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 2/166 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + S I N Q +N FL N+ Sbjct: 94 DVAINGNGFFQVQLPDGNAAYTRDGSFQINPNGQLVTNNGFLIQPVINFPANGNNMSVSR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A + L N + E S + + Sbjct: 154 DGIITVRIPEQTQPIRVGKLYLANFVNDSGLSNIGENL--YQETEASGNPSISSPGSHGT 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + +SY T VN+ EEL +I+ +++Y I++K+I D+MLQ L Sbjct: 212 GLLYQSYVETSNVNIAEELVNMIQAQRAYEINSKVITTADQMLQKL 257 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 33/155 (21%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + + R + Sbjct: 1 MIPALWIAKTGLDAQQINMNVIANNLANVNTNGFKRSKAIFEDLIYHTVQQPGSKSSEET 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +T E+ L +S F ++ N Sbjct: 61 ISPSGFQLGTGVRPITTEREHSQ---GNLSKTNSLKDVAINGNGFFQVQ------LPDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + + ++ + A Sbjct: 112 AAYTRDGSFQINPNGQLVTNNGFLIQPVINFPANG 146 >gi|309788152|ref|ZP_07682758.1| flagellar hook-associated 1 domain protein [Shigella dysenteriae 1617] gi|308924004|gb|EFP69505.1| flagellar hook-associated 1 domain protein [Shigella dysenteriae 1617] Length = 164 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 32/106 (30%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + + + + + + + V + Sbjct: 58 AGDSDNRSGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 117 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S + GVNL EE L + +Q Y + +++ + + L+ Sbjct: 118 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 163 >gi|86154000|ref|ZP_01072202.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842538|gb|EAQ59751.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni HB93-13] Length = 845 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 37/351 (10%), Positives = 95/351 (27%), Gaps = 7/351 (1%) Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 + + Q ++ + ISN + T + + + Sbjct: 500 DGDGSKTYDADDINQAVKVVVTENGNFAISNANETSTIPANAGAGANAATTNPKNMSFNI 559 Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251 +S + I + + + + G + E+ ++ S + Sbjct: 560 TAYSNKQGTVSTNDAFTKIFKAFDGV---LTVGGQIKESEQLKLSAFSAGLEIYDSLGSK 616 Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 ++ V + + + + + ++ Sbjct: 617 HTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTP 676 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + + KL G S + S + + Sbjct: 677 KTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVD 736 Query: 372 --PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 +++ + + +A + N L E N + S + + Sbjct: 737 DKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGR 794 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + S V+L L+ LI +++ Y ++K I +D+MLQTL++ + Sbjct: 795 GEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 845 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 34/427 (7%), Positives = 87/427 (20%), Gaps = 44/427 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + + E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNS-YTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + ++ ++GT L + I ++ +T +N D ++ GS K Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 A+ QN I + + + Sbjct: 293 DNAVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG-----TGVKAVKKADGSG 347 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 L + + + AG + + + Sbjct: 348 IEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTARSAKNNANSVWIPTA 407 Query: 392 AGINTNV 398 A +N N Sbjct: 408 ANVNGNA 414 >gi|15644290|ref|NP_229342.1| flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|148270380|ref|YP_001244840.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281412686|ref|YP_003346765.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] gi|4982109|gb|AAD36609.1|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|147735924|gb|ABQ47264.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281373789|gb|ADA67351.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] Length = 261 Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 2/133 (1%) Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + L ++ N++ + D + + L N Sbjct: 131 SNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPSGLKSIGDNL 190 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++ S + Q F I + + V++ E+ +I +++Y ++++I Sbjct: 191 --YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMITAQRAYEFNSRVIQT 248 Query: 468 TDKMLQTLLEGVK 480 D+ML+T + Sbjct: 249 ADEMLRTATNVKR 261 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 47/217 (21%), Gaps = 33/217 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + + +I N+ N D Y + Sbjct: 1 MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +A+ F ++ Sbjct: 61 SLPTGLYVGHGVRTAATTRI---FTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGR 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E + +L + V N + +++ +E+ Sbjct: 112 IAYTRDGSFKMDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGT 171 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 S L + D + T + D + + +D Sbjct: 172 ITLVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 208 >gi|283784085|ref|YP_003363950.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] gi|282947539|emb|CBG87091.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] Length = 400 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 117/474 (24%), Gaps = 75/474 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA +S + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTV-------------------GYKSMTTDFSAM 42 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + QS + ++ + + Sbjct: 43 YADSQAMGVSVAGTAQSIAR------GGSMVSTGNALDLAINNGGFFVMCDSAGNITYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ N S +Q D ++ + + + Sbjct: 97 AGSFETDKNGYIVNASGACLQGYPVDGSGTLQTGTVTDLQIQTGNIPAQATSNMTFTANF 156 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 DA D R + +S + TT+++++ + + + + T Sbjct: 157 DASDETVDRSTMPFDLSNSDSYTDSYT------------TTVYDSLGNEHSVCQYFTKTD 204 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G++++ ++ +L + F Sbjct: 205 DNSWEVQYS-------------FDGQMESGVEPVTLTFDPNTGKLTSPTSPVSVEFETGA 251 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + QY S+ S + + N Sbjct: 252 AAPIDMT-----------------------FDYSSCTQYGSDFSVTTNSANGYASATQNG 288 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + Y + +A L + W++ S S + + Sbjct: 289 VQVDDDGKVYATYSNGERMLQGQIVLATFPNENGLEAV--SGTAWVQTGESGSALIGVPG 346 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 347 SGSCGTLSSGMLESSNVDITTELVELMTAQRNYQANTKVISTSTQLDDALFQAM 400 >gi|313673416|ref|YP_004051527.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940172|gb|ADR19364.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] Length = 822 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 42/419 (10%), Positives = 105/419 (25%), Gaps = 27/419 (6%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +++ A G F E + + + S + + Sbjct: 431 FESNAVTSNTIAQGATSTSNKFLRYAESTDLLTNLMTNSGQSLGLDNTSTIQMDARIGGN 490 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 I + ++++ I++E + + + Sbjct: 491 IPHGDGVSTLSASGSTIADLTKKLEDYLGLEAGSIKIENGKISVTGEKGIKNQIDYITLS 550 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 A + ++ + G + D F N K+ Sbjct: 551 AIGSGTYATFNEYMKYQTVQNASGGQLITSQTIYDSQGNPHTVNYEFYLYNEANNEWKLK 610 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + ++ I IDG P G + + + + ++ L S Sbjct: 611 LSPADTVNDSISIDGTTGDEVVVRFNPNGSFQGVYDANNGNIIP------NLSYTLSPSN 664 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + + ++ Sbjct: 665 GADKISGVKVFIGKPGEFNGMVLS-------------------AGPSTITKSDQNGFQRG 705 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + ++ +++ Y + K VA L + E S + Sbjct: 706 DLDKISINDVGEIVGSYSNGEIKILGQIAVAIFTNQEGLARVGSSLFS--ETPNSGLAAI 763 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I V++ +E +I V++ Y ++++I +D+MLQ LL + Sbjct: 764 GVAGAGGRGVIQSGAVENSNVDIAQEFVTMITVQRGYQTNSRVITTSDEMLQELLNLKR 822 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/460 (7%), Positives = 113/460 (24%), Gaps = 31/460 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L A + + + + N+ N + Y Sbjct: 1 MLRSLYSAVSGLSQHQKAMDVLGNNVSNVNTVGYKASRLTFKDLMSQTVSIGKAPSGNIG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 S + + F + + Sbjct: 61 GINPLQIGLGTNVASVDNIFLQGTFQTTGVTTDLAIDGKGFF-----IVRGEQQTERYYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + Y N + + D +++ N + + ++ + + E++ Sbjct: 116 RAGNFSFDRQGYLVNPEGFRVQGWMTDLTTGQLLNNADITDIQMGAAQMTLAAKQTSEVT 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ + + + + K+ + G ++ + + Sbjct: 176 LAGNLDTKADPTILQYQPLLTTSNSNTPITSIFNANGLKLDLLDGEPVRIKAHATGITNM 235 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + + + +N + + + ++ +G + L +I + Sbjct: 236 AGVYNSSDVSLGLDSATTVNVVLNGTTYSLNYGAADGTDTDNTFNTLQGFAEELQRIIRT 295 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 V + + S ++ + + + + + S I Sbjct: 296 VDNSATVTISGGKLSINRSSTDFTVNSFSGNPNFAAVLQNLVGTYSTITPSRNSGEIFYE 355 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + S ++ G ++ + + ++ ++ + N T Sbjct: 356 KVITT-GSDFKNLGELANQISTAISGNVSSGFSASYVDNTLDPNVGRLVYTNSPATTT-- 412 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 N I +++ S + + V N I++ ++T Sbjct: 413 --GSNVITGFSIDKAYSGTIFESNAVTSNTIAQGATSTSN 450 >gi|41351258|emb|CAE47476.1| flagellar hook protein [Helicobacter hepaticus] Length = 693 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 46/441 (10%), Positives = 114/441 (25%), Gaps = 8/441 (1%) Query: 31 ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90 + + V + + + + E +M Sbjct: 259 VSTIGINGEKVSFSNNSAITGVSSIVAAQNA-INSLRDKTGVNAYVDAGQLRIENRNQMD 317 Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + N T + + + ++++ T ++A+ F T+ I+ Sbjct: 318 GGEKVKNIRITSGGTGVLQNFVQGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQY 377 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 DA+ E + + +N F+ A + D D++ L ++ + Sbjct: 378 DANMIKNPEKTYYESTATVGVTINRWGMFEIA---NHDDADDEQRNLSLYVTSHFSDNVT 434 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK- 269 + + +L E + + + TS + + Sbjct: 435 NNVLFKETMKALNTASLIEGGAAVNTGKIVKATHATSVDIVDSLGSKHNVRFEFWKTGDA 494 Query: 270 -GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +A++ + + + S+ N + Sbjct: 495 VWSFRAIVPEPAQFIGGSITKPNVFEGGRASFNSDGSLSGMNPPVLQFDPKNGSKGPQRL 554 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 +L G +ET + + L+ + + + Sbjct: 555 ELKFGANETFGGLTSVDKISETYSINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALAQ 614 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N L N S + + +S S V+L L Sbjct: 615 VALANFANNAGLQAEGGNVYSQTGN--SGEPMVGAANTGRRGGVSGSKLEMSNVDLSRSL 672 Query: 449 SFLIKVEQSYNISNKLIMFTD 469 + LI V++ + ++K + +D Sbjct: 673 TQLIVVQRGFQANSKAVTTSD 693 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 24/314 (7%), Positives = 61/314 (19%), Gaps = 41/314 (13%) Query: 17 ASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVT-------VVTQ 55 NI N + + V Sbjct: 1 HQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSVGLGVGI 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + K F + + D + Sbjct: 61 DATTKVFSQGNTQNTDVKTDVAIEGDGFFII-----SPDRGTTHNYTRNGEFLFDANGNL 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-----FLSEL 170 ++ V E + + + I+++ + ++ Sbjct: 116 VTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPGMVMPARATKTITLR 175 Query: 171 TVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-----IVRNNNDMVVY 220 +N D ++ A A D + + + + + + Sbjct: 176 ANLNAGRHIDQMQDVAALDSTAQTAADGVVAIYDSRGVLTQVGEDLGVLFNDDGDAFALN 235 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + G L + + + T N + S+ G + A+ +RD Sbjct: 236 ENQGIWLSYKTAAIRHETVVTNEVSTIGINGEKVSFSNNSAITGVSSIVAAQNAINSLRD 295 Query: 281 SVVPIFQNQLDEMA 294 ++ Sbjct: 296 KTGVNAYVDAGQLR 309 >gi|89072309|ref|ZP_01158888.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] gi|89051841|gb|EAR57293.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] Length = 144 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 10/145 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56 + N N N+ N + + R+ M + + V V + R Sbjct: 2 NMINIGLTGLNANKTALDVTAHNVANVNTPGFSRQQAMMSALAGNNILSAGSGVEVASIR 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K A +S + E + + +N + + L +L + Sbjct: 62 RISDQFIVKQTWAATSQQAASNANLDSMTMLESLLGGEGFN--ISAGLDSLYSALNDATL 119 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTS 141 + +I+ A+ + + FNT Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTL 144 >gi|261407975|ref|YP_003244216.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261284438|gb|ACX66409.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 274 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/265 (10%), Positives = 67/265 (25%), Gaps = 7/265 (2%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + + +I + + + G+ P G + A Sbjct: 12 MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + ++ + + V + V Sbjct: 72 VSIGSIDTLHTPGSAMMTNNPRDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHIDVARNLV 131 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 G + +A +I D + VA I L Sbjct: 132 TSD--GMLVLDSAGDPIQLDEEVTSFTIAQNGAIIQKMSDGTTEEGAIIGVAKIPNPEGL 189 Query: 401 LEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + N + + + ++ I V+L E S +I + Sbjct: 190 EKIGGNMYRVTLNAVPDGDLAAVMFEGNNAEEGTGAIIAGQLEMSNVDLTGEFSEMIVAQ 249 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++++I +D++LQ ++ + Sbjct: 250 RGFQANSRIITTSDEVLQEVVNLKR 274 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 12/58 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 +L + + I NI N + + M + Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDD 58 >gi|315452912|ref|YP_004073182.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315131964|emb|CBY82592.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] Length = 718 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 2/174 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 N + L G + + + Sbjct: 547 AGMNPPVLQFDPKNGSKAPQRITLSMGTAGGFDGITSVDKISETYAIEQNGYQAGDLMDV 606 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 G L+ + + +A + L + S + + Sbjct: 607 RFNGEGALLGSFSNGKTLALAQVAMASFANDAGLQAIGGSVFSETGN--SGKALIGAANT 664 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +S S + V+L L+ LI V++ + ++K + +D++L TLL + Sbjct: 665 GRRGAVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 41/479 (8%), Positives = 99/479 (20%), Gaps = 40/479 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K L F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVI-----SPDRGVTRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160 + E ++ V D + + T ++ + + I+ + Sbjct: 116 TRSGEFLFDAEGNLVTTGGYVVQGWVRDPKDMGSKGSETDMLKIDNTKPLQNIRIDPGMV 175 Query: 161 ----------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI--S 208 AI +S D + + ++++ S Sbjct: 176 MPARSSSKISMRANLNAGRHAEQTGAIFALDSSSKTPSDGVKPQYDSSTNLTQLAEDVGS 235 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + ++ G + +++ T E N I S+ + Sbjct: 236 LFNEDGDAFLLNEDQGIWVSYKNSAMTKAINVSNSNSTLELNGTKISFTNDSAVSRISSL 295 Query: 269 KGKIKALLQIRDSVVPI-FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +A+ ++D + + ++ A K Sbjct: 296 TAAQEAINAVKDKTGVEAYIDNGQLRLENNNNREGDEHVKNIIITGAGTGAFAQFAKGDQ 355 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + T V + + + N+ S + Sbjct: 356 DITAFRYRYTEGVKADPTTGQFKTTEDLRALMQRDANIVKNPKLKGNYKDSAASVSVVVN 415 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 D + I + ++ SD ++ ++ + GV+ Sbjct: 416 KDGMFEITNKDDGNPTREDLSIFVTNYASDKVTSNVLFGKTMGALNTASLIEGGVSTAT 474 >gi|260893868|ref|YP_003239965.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260866009|gb|ACX53115.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 266 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 44/151 (29%), Gaps = 1/151 (0%) Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 I ++ + + V G +I+ K Sbjct: 116 TFYIDKSGYIVNAQGYRLQSTSNDNIQIADPDKIVSISIGSDGVISVVKSDGTKITYNIG 175 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDS-HDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + +L N + +I + V+L +E + Sbjct: 176 LVTFKNPESLQRVGANLWDVTPNVTDPATPTPGAPGTDGRGYIRSGFLEMSNVDLAQEFT 235 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I ++ Y + ++I +D++L+ L++ + Sbjct: 236 NMIITQRGYQANARVITTSDELLRELVDLKR 266 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 12/142 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENV 50 +L + + I NI N + + + + Sbjct: 1 MLRSLFSGVSGLRVHQIRMDVIANNIANINTTGFKAARANFQDILSQTLGRSAVNTTQVG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V+ + + M L A+ F +K + S+ + N+ Sbjct: 61 LGVSLAAIDNIMTQGALQTTGRALDLAIEGNGFFVVKPVDSSGNSVNHPLYTRDGTFYID 120 Query: 111 LESYSKNLSEDILGKTVIDNAE 132 Y N L T DN + Sbjct: 121 KSGYIVNAQGYRLQSTSNDNIQ 142 >gi|261821153|ref|YP_003259259.1| flagellar hook protein FlgE [Pectobacterium wasabiae WPP163] gi|261605166|gb|ACX87652.1| fagellar hook-basal body protein [Pectobacterium wasabiae WPP163] Length = 405 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/402 (9%), Positives = 109/402 (27%), Gaps = 13/402 (3%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 + +S + +N+ + + +S K+ + V+ + Sbjct: 5 QAVSGLNAASNNLDVIGNNIANSATVGFKSGAVTFADMFAGSKVGMGVKVASVLQDFGNG 64 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + +++++ IS + + T + + + ++ + + L Sbjct: 65 TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVTGTP 124 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSA 266 + + + + DG L + S + G +++ + Sbjct: 125 PVVQTGADPVPLTVPDGDMLSRATTAATLKANLKSSDAVPTGSWATTPGAEGTYNSKTNL 184 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----------NSENVPG 316 V N AR + + ++ Sbjct: 185 TTYDSQGNKHDFTLYFVKTANNTWQTYARDGSITPAVYQSAGTLNFEANGALSSTGATAH 244 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + + + + + Q + S+ + + + Sbjct: 245 TPFTINLTGTNGAANGTFTIDLTGSVQQNTEYSYKSPIQNGYAPGALTGFAINDDGTIEG 304 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 +Y + + +A L N W E S + + + Sbjct: 305 NYSNGQKQPLGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKS 362 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 363 TESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 404 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/309 (11%), Positives = 76/309 (24%), Gaps = 8/309 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGAVTFADMFAGSKVGMGVKVASVLQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + S + F L++ + + N + + + Sbjct: 62 GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVT 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V+ + V + + A + L+ S+ S T + + Sbjct: 122 GTPPVVQTGADPVPLTVPDGDMLSRATTAATLKANLKSSDAVPTGSWATTPGAEGTYNSK 181 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI---STIVRNNNDMVVYTSDGTTLFETVPR--DINF 237 + +D + + + + VY S GT FE Sbjct: 182 TNLTTYDSQGNKHDFTLYFVKTANNTWQTYARDGSITPAVYQSAGTLNFEANGALSSTGA 241 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 +T+ +G GS + I++ P Sbjct: 242 TAHTPFTINLTGTNGAANGTFTIDLTGSVQQNTEYSYKSPIQNGYAPGALTGFAINDDGT 301 Query: 298 IGSFSEKDP 306 I Sbjct: 302 IEGNYSNGQ 310 >gi|302670255|ref|YP_003830215.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316] gi|302394728|gb|ADL33633.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316] Length = 572 Score = 82.4 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 37/425 (8%), Positives = 98/425 (23%), Gaps = 19/425 (4%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D+ A + L + + + + + + N ++ Sbjct: 159 DRTKTMAGQATSEAYLKGNIDRDDKQLVEGRTIQMDVYGNDGNVYTINFKLTDNADDEDN 218 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 +V Q + KI ++++ L + L+ +T Sbjct: 219 TYSV--------QIDKILDKNGNKISNTLNEKLTLTYDHANGRLTGITPYPIYTLDNGVQ 270 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 + D + + S + + + + + Sbjct: 271 ELDDDGNVLSTTYTMDGRMGQAEFSRTLTGKDGNQYTIYYSIDHHVPEEGEEETDTADYD 330 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 ++ + LL I L E+ + + Sbjct: 331 FNVVYVRKGEGTRQYINKTMAVIDYDSESGNLLTIDGENAGEINVDLSEIYDGIGDITFD 390 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF--------LRDGG 355 + S Sbjct: 391 ISNTTIPVAAGTSYRFEFNGEADVLGSLNVDFSNTSNYASSNGVHSSSVSAIRGDTYGLN 450 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N ++ + Y + + VA N + L + N + Sbjct: 451 KGYPNGDMNGITISDNGSIYAKYSNGQDVKLAQIVVAEFNNAMGLEKAGDNV--YKASLN 508 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S ++ ++S V+L +E + +I ++ + ++++I +D++LQ L Sbjct: 509 SGEPIYMDITEDG-GYMSSGVLEASNVDLAKEFTDMITTQRGFQANSRVITTSDELLQVL 567 Query: 476 LEGVK 480 + Sbjct: 568 KGLKR 572 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 36/449 (8%), Positives = 102/449 (22%), Gaps = 22/449 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54 ++ A + + I NI N + +Y + T V Sbjct: 1 MMRSLWSAVSGLQTHQLEMDVIGNNIANVNTTSYKSQATGFQDVLYQTIKTGTAGNGVKG 60 Query: 55 QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADDHYNNSPT-----HY 103 S ++ + + + + + NSP Sbjct: 61 STSADQVGLGAKMGSININITKPGSAQTTYNPFDLMITGDSFFVVSESQNSPNQEKYFTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 E + L I+ + + + + A E L+ + Sbjct: 121 DGSFTIDAEGSLVTQNN-GLYVNFIEGEGILGNGEPLISDRTKTMAGQATSEAYLKGNID 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI-IGISTIVRNNNDMVVYTS 222 R + + + D + + + I I+ N + + T Sbjct: 180 RDDKQLVEGRTIQMDVYGNDGNVYTINFKLTDNADDEDNTYSVQIDKILDKNGNKISNTL 239 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + Y + + N + + + G++ R Sbjct: 240 NEKLTLTYDHANGRLTGITPYPIYTLDNGVQELDDDGNVLSTTYTMDGRMGQAEFSRTLT 299 Query: 283 VPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 Q + + E++ + + + + + Sbjct: 300 GKDGNQYTIYYSIDHHVPEEGEEETDTADYDFNVVYVRKGEGTRQYINKTMAVIDYDSES 359 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + +V +++ + + ++ F+ + +L Sbjct: 360 GNLLTIDGENAGEINVDLSEIYDGIGDITFDISNTTIPVAAGTSYRFEFNGEADVLGSLN 419 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 N+ + N S + + Sbjct: 420 VDFSNTSNYASSNGVHSSSVSAIRGDTYG 448 >gi|94266588|ref|ZP_01290271.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93452783|gb|EAT03318.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 619 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 53/184 (28%), Gaps = 4/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 I + + +D E P +G Y + + L Sbjct: 438 IEAINYRDAAGAEPETNPELARIFGPEGSAFAVTESRGDDLQPLRTTNYATASATLSQQQ 497 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ ++ Y + + +A L + + Sbjct: 498 DGFGEGYLQDISVKPDGTMVGRYSNQQSVEQAQVMLADFADYRGLEP--TSHNAYKATAM 555 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + + F + + V+L E S LI ++ + ++K I D++ TL Sbjct: 556 AGEPTIGVAGEGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTL 615 Query: 476 LEGV 479 + Sbjct: 616 MRLK 619 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 42/409 (10%), Positives = 89/409 (21%), Gaps = 24/409 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52 MSL + + N+ S A + NI N + +Y + Sbjct: 1 MSLHNMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + KN L + + + F M + + + + LE Sbjct: 61 SQVAAITKNFRPGDLETTNQSTDMAISGKGFF-----MVNNPLADEMLYTRDGQFK--LE 113 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + T + + + + E+S+ R + Sbjct: 114 KSAITPEGFYNLATPAGHLVQGRNLAANGGA------DNLGDILIQEVSDPRATGNVSLA 167 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 +N K H + + I ++ + Sbjct: 168 MNLQSKPGREDAQPLHTSWNGAAAEPLAADRYDYRTIIQAFDDQGRQFDLTVYFDQTERD 227 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 F + + + DG ++ ++ S + Sbjct: 228 NQREFLVTHDPALDRR---LRQDGEGRYNDGEEPETGAGALLYGKLNFSSTGELMDIKAW 284 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++D A + + L I V+ + S+ + Sbjct: 285 EIPADGNLDPQEDNKLPRDPQSGLHSFAFNLSGQGDNLTSTIDFGATVSTRTVSSGGGAK 344 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 GS + + F V G TL Sbjct: 345 VDGSGATAANVSAMTTWDQVYDPQGRQVREGDQLTFSGVDGNGAAATLT 393 >gi|291562027|emb|CBL40843.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 305 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/262 (9%), Positives = 69/262 (26%), Gaps = 12/262 (4%) Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 K + + ++ S + + L F Sbjct: 45 MYQTSTTSTKGSENAGGVNAAQYGYGSMMGSISTDMSASTPTYVGGLNASVDGEGFFITF 104 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 V + + D N + + + ++ + Sbjct: 105 PKSTETVTVADMKKTDFDYTRVGQFNIDGNGYLTDANGNFVYGFRPDAVDKPTKFDGDLV 164 Query: 350 FLRDGGSVSKKFLWNV-----------KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 ++ V+ + ++G + D + +A Sbjct: 165 AIKVPSDVTGADFDDPLQLTNVKINSLGEISGTVKSTDPDKDGKTVSIGKVAIATFQNPE 224 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + G E + S + + + + Y V+L +E S +I ++ + Sbjct: 225 GLSKKGSFYYGAAESDNSGNASATIPG-GSTSSLMTGYLEASNVDLAKEFSDMITTQRGF 283 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 ++K+I +D++L L+ + Sbjct: 284 QANSKIITVSDEILSDLINMKR 305 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/294 (9%), Positives = 71/294 (24%), Gaps = 8/294 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + A + + I NI N + + + + + + + Sbjct: 1 MLRAMDSAVSGLRAHQNKLDVIGNNIANVNTFGFKSQSYSFKEAMYQTSTTSTK------ 54 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +A Q ++ MSA + ++ K+ Sbjct: 55 --GSENAGGVNAAQYGYGSMMGSISTDMSASTPTYVGGLNASVDGEGFFITFPKSTETVT 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + A+ + + + + Sbjct: 113 VADMKKTDFDYTRVGQFNIDGNGYLTDANGNFVYGFRPDAVDKPTKFDGDLVAIKVPSDV 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D D L +V + + EI G + D + + + +K + Sbjct: 173 TGADFDDPLQLTNVKINSLGEISGTVKSTDPDKDGKTVSIGKVAIATFQNPEGLSKKGSF 232 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 Y +ES+ + S++ G ++A Sbjct: 233 YYGAAESDNSGNASATIPGGSTSSLMTGYLEASNVDLAKEFSDMITTQRGFQAN 286 >gi|323703191|ref|ZP_08114844.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531850|gb|EGB21736.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 260 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 2/107 (1%) Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + ++ + LL+ N S + Sbjct: 154 GKVQGKTAEGDFQDIDEITLYTFPAPANLLDEGNNLYSP--TTASGEATEGTPGEDGVGL 211 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + Y V+L +E+ +I+ +++Y + + I D+M Sbjct: 212 IRQGYLERSNVDLAQEMLGMIEAQRAYAANARTIQTADEMWDRANNL 258 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 40/179 (22%), Gaps = 28/179 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ + + +I NI N + Y R Sbjct: 2 IIKTLATGASGMRAFQMKLDTIGNNIANINTTAYKRSRIEFAEMMRQAMGDQGIPAASDP 61 Query: 45 --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +V+ + L + + + + + Sbjct: 62 RPAGGSGVKMVSVARLVEQ---GDLLQTGRDLDLAIEGEGYFKVIS-----PEDDREYYT 113 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + E N + L + V +VQ A+ D + EI+ Sbjct: 114 RDGCFYLNNEGVVVNANGYKLEPEINLKDGNYVAIRIDEKGKVQGKTAEGDFQDIDEIT 172 >gi|291334312|gb|ADD93973.1| flagellar hook protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 376 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/355 (10%), Positives = 80/355 (22%), Gaps = 13/355 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57 F A A A+ NI N + + + + +S Sbjct: 2 SFYTALTGLKGAQTDIATTSNNIANVGSSGFKKSRAEFGDIFGSTPLQTNTVGAGTATKS 61 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + ++ + Q F LK + + + + + Sbjct: 62 IKQQFSQGNISQSTNTLDMAVSGQGFFTLK----GGGNAGQTVFTRNGSFSVNDAGFIVD 117 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + L +DN V A ++Q + D +I+ S+ VV + Sbjct: 118 SNGQFLLGYPVDNGGAVADKTLEGAVQLQLAASFGDPVATKKINAGVNLPSDAPVVAANV 177 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 F + + I + T +T +I Sbjct: 178 AFDANDAKTYSASSSVTIFDNGGNPKSATVFYIKSQDPTDADPTFKYSTKMFVDGVEIKP 237 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMARV 296 + + + I G ++ + + M Sbjct: 238 QLTRATDNKGVTQFIDKFGQKTTAPTEINPAYILDGKGAPLYKADDLGEAAKSTPAMITG 297 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 L D P F N + + T Y S + + Sbjct: 298 LGLEAFLGDGKTVEIVTDPMQFKRTMEWQALNNIDPPVPGTFWGKDFYSSMWTIV 352 >gi|238782792|ref|ZP_04626821.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC 43970] gi|238716215|gb|EEQ08198.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC 43970] Length = 359 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/427 (11%), Positives = 103/427 (24%), Gaps = 70/427 (16%) Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V S N+N D VL +S++ F L + + Sbjct: 2 GVQVSSVNQNFSDGVLGMGNSSLDMGIQGNGFFRLTN------DAGRVFYSRNGQFKTDA 55 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + + N L F + A I++ + S+ Sbjct: 56 DGFIVNNQGMNL------------TGFQATGNPPTIQPGAAVGPIQIPNGQMPARASDSG 103 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++N + T + + D D + + N + + +Y Sbjct: 104 ILNGNLDSGTEAIDQTVNPFDPADNSSYSSVSQLDAYDSLGNKHTINIYFVKTGDNEWKA 163 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + + I Sbjct: 164 YSSNTTSPKVDGAGDAVYQELDIQFDTSG------------------------------- 192 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 L+ + ++ + L + Q S S Sbjct: 193 ----QLVTTPAKLNIQGAAFNGGEPLNFDL---------------DLAGMTQQASETSMD 233 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 R + + N + ++I Y + + ++ L N WL Sbjct: 234 RQSTTGYAPGMMNGYTVGDGGEIIASYSNGEQQLLGQVVLSSFTNPGGLSSQGDNC--WL 291 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + +S + V+L +E+ +I +++Y +++ I ++ Sbjct: 292 ETPESGQPVTGISGTGNLGKLSGNKLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSEL 351 Query: 472 LQTLLEG 478 LQ L Sbjct: 352 LQILANL 358 >gi|23099019|ref|NP_692485.1| flagellar basal body rod protein FlgG [Oceanobacillus iheyensis HTE831] gi|22777247|dbj|BAC13520.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] Length = 285 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 69/253 (27%), Gaps = 1/253 (0%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 +NF+ M S T + G V +S G G I + V Sbjct: 33 GYKKSMVNFQDMMSQTTSGAQGSTANRGGVNASQVGLGSTIGAISNIHTQGFQQVTNNPL 92 Query: 289 QLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + D G + + + L + Sbjct: 93 DFAIEGDGMFVLVEGVDADGEGGTNIDLDNVNTAYSRAGNFYLDDNGNIVNSQGLYLVGF 152 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 +++ ++ + + + +A + L + N Sbjct: 153 VGDPAQESTINIPESAQSFSVQSNGTVNYIDANGDTQVAGQVALASFSNPSGLQKAGNNL 212 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 +S + + + V+L EE + +I ++S+ + ++I Sbjct: 213 YLDSPNAGLAEQLYTPESDDLGSSVVSGALEMSNVDLSEEFTEMITAQRSFQANTRIITT 272 Query: 468 TDKMLQTLLEGVK 480 +D++LQ L+ + Sbjct: 273 SDEILQELVNLKR 285 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 39/188 (20%), Gaps = 28/188 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 +L + N+ + I NI N + Y + T Sbjct: 1 MLRSMYSGISGMKNSQTKLDVIGNNIANVNTVGYKKSMVNFQDMMSQTTSGAQGSTANRG 60 Query: 54 -----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-- 100 T + + ++ + L E + AD + Sbjct: 61 GVNASQVGLGSTIGAISNIHTQGFQQVTNNPLDFAIEGDGMFVLVEGVDADGEGGTNIDL 120 Query: 101 ------THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 N L V D A+E N SA+ Sbjct: 121 DNVNTAYSRAGNFYLDDNGNIVNSQGLYLVGFVGDPAQESTINIPESAQSFSVQSNGTVN 180 Query: 155 EIELEISN 162 I+ Sbjct: 181 YIDANGDT 188 >gi|192361762|ref|YP_001982398.1| flagellar basal body rod protein FlgG [Cellvibrio japonicus Ueda107] gi|190687927|gb|ACE85605.1| flagellar basal-body rod protein FlgG [Cellvibrio japonicus Ueda107] Length = 261 Score = 82.0 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 60/186 (32%), Gaps = 2/186 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + A + F+ + D + + Q + +L Sbjct: 76 ATQKEFTEGNIQVTEQALDVAIDGRGFLQVLLPDGTIAYTRNGQLQLNGEGQVVNADGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + + + + + + L N +L Sbjct: 136 LEPAIIVPEGVNKITIGSNGTVNAFAPGVADPQQLGDITLTDFINPSGLQAIGGNL--FL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + + V++ EE+ +I +++Y +++K++ D+M Sbjct: 194 ETPASGNPVQGIPGENGMGSLKQGMLESSNVDIVEEMVNMITTQRAYEMNSKVVSTADQM 253 Query: 472 LQTLLE 477 LQ + + Sbjct: 254 LQYITQ 259 Score = 57.7 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 64/245 (26%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ +Q A+I N+ N + R + Sbjct: 1 MHSALYVSKTGLAAQDRQLATISNNLANVATVGFKRDRAIFEDLLYQNQRQPGAQETQET 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + K + + A+ + F + Sbjct: 61 QLPSGLQLGTGVRVVATQ---KEFTEGNIQVTEQALDVAIDGRGFLQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEI 156 +L+ + E N +L +I + ++ N + AD + Sbjct: 112 IAYTRNGQLQLNGEGQVVNADGYLLEPAIIVPEGVNKITIGSNGTVNAFAPGVADPQQLG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 ++ +++ + + AS + + + K + + + Sbjct: 172 DITLTDFINPSGLQAIGGNLFLETPASGNPVQGIPGENGMGSLKQGMLESSNVDIVEEMV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|294084418|ref|YP_003551176.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663991|gb|ADE39092.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] Length = 1575 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 2/162 (1%) Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + + + + Q+ S L + + + Sbjct: 1414 PKNNVHYEKQEEGFSIALDVDFAASTQFAQPFSVLSVQQDGFTSGRLDGLEIDSSGTIRA 1473 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 +Y + N VA N L + ++E S + + F +I Sbjct: 1474 NYTNGQNNPLGKIVVANFNNQNGLKQIGNA--TYVETAVSGTPQVGEAGAEGFGNILSGS 1531 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V++ EEL LI +++Y S K I T + QT++ Sbjct: 1532 LERSNVDITEELVNLITAQRNYQASAKAIETTTGLTQTIINI 1573 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 51/426 (11%), Positives = 99/426 (23%), Gaps = 21/426 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55 F A N +S ++ NI N + R S + Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNSSSSLGSGAIL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + +A+ Q F ALK + + L + Y Sbjct: 62 KGVKQQFTQGNIASSLNALDLAISGQGFFALKPSL----TSAQTVYTRNGSLNVDNDRYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + L ++N V SA +Q D + I+ + VV D Sbjct: 118 VDSAGQYLLTYPVNNDGSVTAKDLQSAVPLQLPVTSGDPQATSNINLGVNVPASSEVVTD 177 Query: 176 AIKFKTASKHDAHDFLDQRD----VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 +F + D + + + + V Sbjct: 178 QAQFADGYTFNPDDASTFTNSTSITIFDDLGNPTIATVYFIKTQSASADDPTNKYDTRLV 237 Query: 232 PRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 D + +V N +FID + + +GK L ++ D I + Sbjct: 238 INDQIIDPDLVSSVDEAGNQVFIDRFGRQTTTVPDDNYFLEGKGSPLYKLDDLQKLIPSS 297 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 F E+ P F A + + +N P Sbjct: 298 PATIKGEQTSFDFGEEGDKLVEIVTDPLEFKATREGGNAGGDVYWGKDFLLINVDDSDQP 357 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + D + + Sbjct: 358 VSIDIRPGTYNATQLAAEVERSVNAAYGDDRKLQIVQNLDDKIKIDLKRTDADGAVSSLD 417 Query: 409 GWLEKN 414 +E + Sbjct: 418 TAIEVD 423 >gi|256833233|ref|YP_003161960.1| hypothetical protein Jden_2019 [Jonesia denitrificans DSM 20603] gi|256686764|gb|ACV09657.1| protein of unknown function DUF1078 domain protein [Jonesia denitrificans DSM 20603] Length = 397 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/384 (9%), Positives = 98/384 (25%), Gaps = 20/384 (5%) Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + N + +T + + +A+ A + +++S + + Sbjct: 22 TGNNIANVNTTGYKASQTQFKDTLSQMVQNAGAAQGGVGGTNPAQVGLGVQVSGITTNFT 81 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + T D D V+ + + + +++ T +G + Sbjct: 82 QGA------AQTTGRSTDMMISGDGFFVVQKDGQQFYTRAGAFDFDSNGNFVTPEGAYVM 135 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQ 287 + + + ++ +P RD VV Sbjct: 136 GWPATNGAIDVNGQIGPLRLPMTALLGSEETTAISFDGNLPSDAATGTNLDRDVVVYDSL 195 Query: 288 NQLDEMARVLI-----------GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + + + D + GI+ Sbjct: 196 GNARTVTLSFAKVTAPGPGAMQWTVTATDENGSTGTSTLEFDANGQTTAGTAVTVGGITV 255 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + Y + + + + ++ + + + +A Sbjct: 256 DLATITGYANLTTVQASSRDGQQAGSLQSFQITADGTVLGAFSNGLKQAVGKISLATFAN 315 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + N G S + + V+L +E + LI ++ Sbjct: 316 PAGLEKQGGNLYGT--SVNSGDAQVGEPGMGGRGGLVGGALEMSNVDLSQEFTNLIIAQR 373 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 + ++++I +D++LQ L+ + Sbjct: 374 GFQANSRVITTSDEVLQELVNLKR 397 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 28/370 (7%), Positives = 65/370 (17%), Gaps = 18/370 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + NI N + Y T + + ++ Sbjct: 1 MLRSLFSGISGMRSHQTMLDVTGNNIANVNTTGYKASQTQFKDTLSQMVQNAGAAQGGVG 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + Sbjct: 61 GTNPAQVGLGVQVSGITTNFTQGAAQTTGRSTDMMISGDGFFVVQKDGQQFYTRAGAFDF 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + N V ++ E + L Sbjct: 121 DSNGNFVTPEGAYVMGWPATNGAIDVNGQI---GPLRLPMTALLGSEETTAISFDGNLPS 177 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + + G D T T F+ Sbjct: 178 DAATGTNLDRDVVVYDSLGNARTVTLSFAKVTAPGPGAMQWTVTATDENGSTGTSTLEFD 237 Query: 230 TVPRDI--NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + TV + + + V ++ G +++ D V Sbjct: 238 ANGQTTAGTAVTVGGITVDLATITGYANLTTVQASSRDGQQAGSLQSFQITADGTVLGAF 297 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + A I + +P + + D V + Sbjct: 298 SNGLKQAVGKISLATFANPAGLEKQGGNLYGTSVNSGDAQVGEPGMGGRGGLVGGALEMS 357 Query: 348 PSFLRDGGSV 357 L + Sbjct: 358 NVDLSQEFTN 367 >gi|313681188|ref|YP_004058926.1| flagellar hook protein flge [Sulfuricurvum kujiense DSM 16994] gi|313154048|gb|ADR32726.1| flagellar hook protein FlgE [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 44/448 (9%), Positives = 112/448 (25%), Gaps = 7/448 (1%) Query: 37 VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 V++ + V+ S D + SA + S + + Sbjct: 314 VQQAINAQTANTGVSATVVGSNLVLTNDNSRDSDGSATKNIVITGSNAGALALGFTNQSV 373 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + + D+ + + + +D Sbjct: 374 ITAYKYTYTTNAADATPLINSYAVPTTSVPPADSNFTTTEQLRLLMETHAQYVSGSDPAG 433 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + ++ND +F+ ++ D + + + S+ + Sbjct: 434 TVAPAGVNFATGIKIIINDRGQFEVSNLSDGDANQENLKLQVTGYSDPA-ANVTKNERFT 492 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 ++ + +GT + + ++ + S + + Sbjct: 493 ALMQSINGTVVEGSTGIRLSQSMNAATHSASIDVYDSLGSKHTLKMDFRKTSVDVVSGST 552 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS- 335 VP P S P I Sbjct: 553 WSMKLSVPEPGEINTIAPINEFNGQVRFGPDGALSSYTPTNITYTANNGSSPNQTINIKL 612 Query: 336 ---ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + L+ + + + +A Sbjct: 613 GTANAFDGVTSFDATSGTSGISQDGFPGGDLVGIRIDQSGTLVGSFSNGRSFGLAQMGMA 672 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N L+ N +L+ S + + + S V+L + L+ LI Sbjct: 673 KFTNNEGLVSDGGNV--YLQSANSGDPIIGTAATAGRGFMQSSSLEASNVDLSKSLTQLI 730 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ Y + K I +D +L+TLL + Sbjct: 731 IIQRGYQANGKTITTSDTLLETLLGIKR 758 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 37/412 (8%), Positives = 74/412 (17%), Gaps = 15/412 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 +L NI N + Y + Sbjct: 1 MLRSLFAGVTGLQAHQIAMDVESNNIANVNTIGYKYSRANFSDLLAQTSQIATAPQGDIG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP--THYISKL 107 Q + +I + S Sbjct: 61 GKNAVQVGLGTTISSVTRIMTQGSIQNTDKNTDVAIQGDGFFIVSSDAGSTYKYSRSGDF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + ++ V D A V + + ++ Sbjct: 121 KFDAAGNFVDNNGFVVQGWVRDEATGKVDSTAPISNINIPPGLTTPANATADVVLKANLD 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 S TV S + + + + G N ++ S TT Sbjct: 181 SGETVETFNATNSMDSYNLEYASNYAVWQAAGFVPAVGGALPAPPNAATQALWYSAYTTR 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 N M + S + V + + +P + I Sbjct: 241 NANTNSAENMNVMFNEQGQSLTMQPNQGVWVSYKDSVTTIPMVSAAGAFTFTLNGTTISG 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + + + V + + ++ SN Sbjct: 301 TTSGVTLADDAATVQQAINAQTANTGVSATVVGSNLVLTNDNSRDSDGSATKNIVITGSN 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 L G + +S+ P A N T Sbjct: 361 AGALALGFTNQSVITAYKYTYTTNAADATPLINSYAVPTTSVPPADSNFTTT 412 >gi|315648129|ref|ZP_07901230.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315276775|gb|EFU40118.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 13/268 (4%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + + +I + + + G+ P G + A Sbjct: 12 MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + + + +P + + L + + V Sbjct: 72 VSIGS-----IDTMHTPGSAMTTHNPTDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHVDV 126 Query: 341 NPQYRSNPSFLRDGGSVSK---KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 ++ L + +A +I D + VA I Sbjct: 127 ARNLVTSDGMLVLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTTEAGAIIGVAKIPNP 186 Query: 398 VTLLEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L + N + + + ++ I V+L E S +I Sbjct: 187 EGLEKIGGNMYRVTLNAVPDGDVAAVMFEGNDAEEGTGAIIAGQLEMSNVDLTSEFSEMI 246 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++++I +D++LQ ++ + Sbjct: 247 VAQRGFQANSRIITTSDEVLQEVVNLKR 274 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/214 (8%), Positives = 44/214 (20%), Gaps = 29/214 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51 +L + + I NI N + + M + + VT Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V+ S + + + F +K + Sbjct: 61 GGVNAKQIGLGVSIGSIDTMHTPGSAMTTHNPTDLRIDGDGFFMVK----LSEDQEVPFL 116 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + V+D+A + +Q + +++ + Sbjct: 117 TRAGDFHVDVARNLVTSDG----MLVLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTT 172 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + N K D Sbjct: 173 EAGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPD 206 >gi|325567523|ref|ZP_08144190.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] gi|325158956|gb|EGC71102.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] Length = 298 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 N V LF+ + N I V + + + Sbjct: 22 VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 81 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327 G ++ + D + + + ++ +D +S + Sbjct: 82 VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 141 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 Q + + + S+ N + L I+ K Sbjct: 142 VNGGQPVVYDDNFDENTALSGQGAVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 201 Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 V G T +++ + S + + + V+ Sbjct: 202 QTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNAIVAGPGNNGAGTLQAGALEMSNVD 261 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L E + +I ++Y +++ I +D+MLQ LL + Sbjct: 262 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 298 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 11/179 (6%), Positives = 34/179 (18%), Gaps = 16/179 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51 +L + N + + NI N + + + + Sbjct: 1 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYISK 106 + + + ++ Q +S + + Sbjct: 61 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 N + ++ + VV + N + + Sbjct: 121 FVRDSNGTLTNSDGMQVLGRSVNGGQPVVYDDNFDENTALSGQGAVSPLSIPSTLTVNG 179 >gi|304438415|ref|ZP_07398355.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368498|gb|EFM22183.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 678 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 96/327 (29%), Gaps = 7/327 (2%) Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 KE++ + ++ A + T++ D + S + + Sbjct: 359 KEVKGQPGSILATADGNKAKLAAAETVTSATQTFARVATAADGNVASTSRVSVYEYNNKT 418 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + +V+ T GT++ V + +V + G S + Sbjct: 419 VSGVVLNTKSGTSIDGLVAKSYGTGDTFYPSVATTITVYDSLGAKHSVPVVYTKAENNKW 478 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + V + AG + + Sbjct: 479 TISLGSGGDSYTIKEADGTTTTVALTKTDLNFDTAGGYVSGSASLNLTYTNGAAPQQVSM 538 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 I S + + + ++ + Y + + +A Sbjct: 539 NLAAITQYSG----TSTISATSDGNAAGTLSSVDIDSTGVITGTYTNGVRQKEAQIAMAQ 594 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L + N + E N S + + S + ++ S V+L ++ S +I Sbjct: 595 FNNPSGLTKMGGNL--YQESNNSGTRTISGASDIG-TELTTSALEMSNVDLADQFSDMII 651 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++K+I +D+ML+TL+ + Sbjct: 652 TQRGFQSNSKMITVSDEMLETLINMKR 678 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/445 (7%), Positives = 91/445 (20%), Gaps = 21/445 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ A + + + NI N + + Sbjct: 1 MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASSPTGTIG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +L+ + S + + + + Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDVAISRGDGLFVVSKGQQKFYTRNGAFS 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165 E S + + + N + + + + K A NL Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLNVAGDNTTKIQIPAGKSMEAATTATASYTKNLNA 180 Query: 166 FLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-D 223 V N +K+ + A+ + + +S ++ T + Sbjct: 181 STPGYEVANTLVKYADGTSETVANYTPTETGRISLTLSTGETVTLDGTATYPFDTATPVN 240 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 G TL+ + +I + +P + + + +++ Sbjct: 241 GKTLYTSKISNITASATGKVDLKLGIDPTNASSPKKIAGATADISLTGLESGTYAYGGTY 300 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 I E + + + Sbjct: 301 NISGTIRKVTTVGTNEIELELAADNNFTNPKAVTTVTVPSPTTFTYKVGDTYNGQLKIKE 360 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI--NTNVTLL 401 + P + +K L + + + + N + N T+ Sbjct: 361 VKGQPGSILATADGNKAKLAAAETVTSATQTFARVATAADGNVASTSRVSVYEYNNKTVS 420 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQ 426 N+ + + Sbjct: 421 GVVLNTKSGTSIDGLVAKSYGTGDT 445 >gi|312884834|ref|ZP_07744526.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] gi|309367486|gb|EFP95046.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] Length = 398 Score = 81.6 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/254 (11%), Positives = 66/254 (25%), Gaps = 2/254 (0%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T + + + +P + S + G + Q P Sbjct: 147 TTSMDFVANFDASAEQVDQTVNPFDPNNTNSFNSSYSTKVYDSLGNEHNVNQYFTKTGPN 206 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++ S + + I + + Q+ Sbjct: 207 TWQVNVQVDGAATPSATIAMNFNSDGSLQTPTAPYSVAFPAAGAQPMNIQVDLSGSTQFG 266 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + + + Y + ++ +A L++ Sbjct: 267 AAFGVSTNSHNGYTSGELVGARVEDSGRVYATYTNGQSQLQGQVVLADFANPQGLVKV-- 324 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N W + S + + + +S V+L EL L+ +++Y + K I Sbjct: 325 NGTAWTQSFSSGAPIVGVPGTGTLGDLSPGALEGSNVDLTSELVNLMTAQRNYQANAKTI 384 Query: 466 MFTDKMLQTLLEGV 479 DK+ Q L V Sbjct: 385 STNDKLTQALFNAV 398 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 37/393 (9%), Positives = 89/393 (22%), Gaps = 7/393 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + +I NI NA + T + + + + Sbjct: 2 SFNIALSGLDATNTDLNTISHNIANASTTGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D + +++ + + L Sbjct: 59 NFDKNGSISGTGRPMDLAINGTGFFVTKDSTGQTQYTRAGVFNRDKDNFLVSNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D ++ + + A ++N ++ + + Sbjct: 119 YSVDGNNNLLTGASGDIKLSTSSLAAKATTSMDFVANFDASAEQVDQTVNPFDPNNTNSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + + N + V T I + ++ Sbjct: 179 NSSYSTKVYDSLGNEHNVNQYFTKTGPNTWQVNVQVDGAAT----PSATIAMNFNSDGSL 234 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + P + + + V N V Sbjct: 235 QTPTAPYSVAFPAAGAQPMNIQVDLSGSTQFGAAFGVSTNSHNGYTSGELVGARVEDSGR 294 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A + L + D N + S + G+ + L Sbjct: 295 VYATYTNGQSQLQGQVVLADFANPQGLVKVNGTAWTQSFSSGAPIVGVPGTGTLGDLSPG 354 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 DL + + + A + Sbjct: 355 ALEGSNVDLTSELVNLMTAQRNYQANAKTISTN 387 >gi|329929265|ref|ZP_08283018.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328936634|gb|EGG33077.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 274 Score = 81.6 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 72/265 (27%), Gaps = 7/265 (2%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + + +I + + + G+ P G + A Sbjct: 12 MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + L + + I G+ + L + L + + Sbjct: 72 VSIGS-IDTLHTPGSAMTTNNPTDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHVDVARNL 130 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 G + +A +I D + VA I L Sbjct: 131 VTS-DGMLVLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTTEEGAIIGVAKIPNPEGL 189 Query: 401 LEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + N + + + ++ I V+L E S +I + Sbjct: 190 EKIGGNMYRVTLNAVPDGDLAAVMFDGNNAEEGTGAIIAGQLEMSNVDLTGEFSEMIVAQ 249 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++++I +D++LQ ++ + Sbjct: 250 RGFQANSRIITTSDEVLQEVVNLKR 274 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/214 (8%), Positives = 44/214 (20%), Gaps = 29/214 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51 +L + + I NI N + + M + + VT Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V+ S + ++ + F +K + Sbjct: 61 GGVNAKQIGLGVSIGSIDTLHTPGSAMTTNNPTDLRIDGDGFFMVK----LSEDQEVPFL 116 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + V+D+A + +Q +++ + Sbjct: 117 TRAGDFHVDVARNLVTSDG----MLVLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTT 172 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + N K D Sbjct: 173 EEGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPD 206 >gi|313650465|gb|EFS14872.1| flagellar hook-associated 1 domain protein [Shigella flexneri 2a str. 2457T] gi|332758243|gb|EGJ88566.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri 4343-70] gi|332759639|gb|EGJ89944.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri 2747-71] gi|332761429|gb|EGJ91713.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-671] gi|332767691|gb|EGJ97884.1| hypothetical protein SF293071_1345 [Shigella flexneri 2930-71] gi|333004893|gb|EGK24413.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri VA-6] gi|333005420|gb|EGK24938.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-218] gi|333008287|gb|EGK27761.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-272] gi|333019401|gb|EGK38684.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-304] gi|333019777|gb|EGK39049.1| flagellar hook-associated protein 1 domain protein [Shigella flexneri K-227] Length = 192 Score = 81.6 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 33/106 (31%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + + + + + + + + V + Sbjct: 86 AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 145 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S + GVNL EE L + +Q Y + +++ + + L+ Sbjct: 146 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 191 >gi|192358786|ref|YP_001982400.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] gi|190684951|gb|ACE82629.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] Length = 803 Score = 81.6 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 46/405 (11%), Positives = 95/405 (23%), Gaps = 23/405 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 FN A + A+ NI NA + + + VT Sbjct: 2 SFNTALSGIRAANTDLQVTGNNIANASTIGFKSSRAEFGDVYTSTLLGGGANTPGSGVTI 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ + L + + E + Y Sbjct: 62 QNIRQQFTQGNLKFTQNELDLSING-------EGFFVVEKNGERLFTRAGTFGLDKNGYI 114 Query: 116 KNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 N + +L V D + + + + D L + + Sbjct: 115 VNGTGALLQGFVADANGNISGVLSDLRVDVSSQAPRQTTAVDASFNLNANESVLETTGQR 174 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 ++ A + +V ++ I+ N +Y +D TL T Sbjct: 175 FSSNGSGVNEAQQGAKTATTSTLNVGAVSLAPSGSITFSPSNTTTFTLYRTDPVTLATTS 234 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + T + + S A L + ++ Sbjct: 235 STIQLNSGSAASTSALANLINSANFDSPSPVNVEAYADATTGELRFRDLATGVASIIAVE 294 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + A S V + S T+ + ++ +++ Sbjct: 295 VNPASDANPLTTALNGAATSVGVAHPTAFQ--AGVPEVTNNYGSHTLVIRNPGGTDVTYI 352 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + GS + K + LAG N +F + +N Sbjct: 353 SEYGSSADKTASELNALAGVSATANTTATLIGSSFSNNGSFRLNG 397 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/421 (9%), Positives = 104/421 (24%), Gaps = 17/421 (4%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-LESYSKNLSEDILGKTVIDNA 131 + S + I+ L S L S L + + Sbjct: 384 GSSFSNNGSFRLNGVNLTSTGTPDMTALRDEINALSTSTLFGISAQLDDAGNLQITSATG 443 Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISN-------LRRFLSELTVVNDAIKFKTASK 184 ++ +F+ Q A + + + L E +N + Sbjct: 444 RDLDFSFDVGGGVAQVQGAQGPAQTVNNATEKVKIGGVVTVTLQEGYSINSSQPTVPVYG 503 Query: 185 HDAHDFLDQRD--VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + ++ + + + + VY S G Sbjct: 504 GSLYGSINVPNFFTPVPINAFDPNDQKTYNHATSTTVYDSLGNPHVMRQFFVKQAYDPAD 563 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + +++ + + + V + + S Sbjct: 564 PSTSPNHWVMYVQIDGQNVGDPNPSLPSPQNTQPTMASFNVHFYPDGSLNPFATDTMLIS 623 Query: 303 EKDPIAGNSE-----NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 P+ + + + G+ ++ + + Q+ S + + Sbjct: 624 NWTPLGTDGQPVGALGPLNVLQGGGVPVVEPPTSSNFEVDLAGSTQFGSVFAVESLDQNG 683 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +++ + + + + +A + L W + S Sbjct: 684 YATGRLAGLDISTTGIVFARFTNGEAQILGQVALANFASVDNLKPTGDTM--WTQTFESG 741 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +I+ V+L E+L LI +++Y + K I + QT++ Sbjct: 742 EAVIGAPGSAQLGNITAGAVEESNVDLSEQLVNLIIAQRNYQANAKTIETANATTQTIIN 801 Query: 478 G 478 Sbjct: 802 L 802 >gi|288871078|ref|ZP_06116279.2| flagellar hook protein [Clostridium hathewayi DSM 13479] gi|288864882|gb|EFC97180.1| flagellar hook protein [Clostridium hathewayi DSM 13479] Length = 653 Score = 81.6 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 28/404 (6%), Positives = 81/404 (20%), Gaps = 13/404 (3%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 E + + + + + + + +A V Sbjct: 252 ENVFQKPLTGAELLGDHFGINEGTFEFVTSTDAADGIFGGLKFSGMSTSPAFDAAGPVDF 311 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + V + + T + + I Sbjct: 312 KSELRPGTGGKMAWVVTATVDGREFVGEINENTTTAGKMWLKEAGTGQYIEMSHPGYTAI 371 Query: 208 STIVR-------NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 ++ + V + T F + + + + + Sbjct: 372 TSSFNAGTGNTAQSFHNVTMPAAAGTGFFNKSMSLKDYGTSGINPGDDIEYSAVKIPASA 431 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPG 316 N+ D L + D Sbjct: 432 GNKAKWHVTAVSGGKTYSGDISEGDAAGDLVLTEEGGGTLTIDHKGYSDINTAFLNADEA 491 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 D+ + + + + G + Sbjct: 492 DKTYASFVPKDHAGTITAATQSNDAGLGSGTFTLENGTEGGAISLSGASIAILGNGIIEA 551 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + D + L E + + + S + + S Sbjct: 552 THPDKGKIQIGRIDLVTFENPYGLEESGNSY--FRATSNSGEAKACQAGEDGTGALKTSS 609 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E S +I ++ + ++++I +D +L+ L+ + Sbjct: 610 LEMSNVDISTEFSDMIVTQRGFQANSRIITVSDSILEELVNLKR 653 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/461 (6%), Positives = 93/461 (20%), Gaps = 45/461 (9%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMT-----------------------TISPENV 50 + I NI N + + + Sbjct: 1 MKAHQTKLDVIGNNIANVNTYGFKSSRARFQDVFYQTLQSAAGGDNNKGGTNASQVGYGS 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-------ADDHYNNSPTHY 103 + + +M L + + + F + + + +++ + Sbjct: 61 QLGGI---DLDMSRSALQSTGRPLDVAIAGEGFFQVMDADGNIFYTRAGNLMLDSNSGNL 117 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ S + I + ++ +++ + E ++ Sbjct: 118 VDSNGYTVLGVSGDPLGKAPSSDKI-HLNIPTKSSGLASKTLTINGTQFTITSEKATTDA 176 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ N + + + D D + + I + + + + Sbjct: 177 NVSITFKAEDN--LPSGSDIVVNPSDINDSSITVHVNKNAIFTSLSDFNSKMNSAITRGC 234 Query: 224 GTTLFETVPRDINFEKM------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 G I + I+ + G L Sbjct: 235 GGKAHPGGNFTITATPAENVFQKPLTGAELLGDHFGINEGTFEFVTSTDAADGIFGGLKF 294 Query: 278 IRDSVVPIFQNQLDEMARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 S P F + + + + + K+ Sbjct: 295 SGMSTSPAFDAAGPVDFKSELRPGTGGKMAWVVTATVDGREFVGEINENTTTAGKMWLKE 354 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + T + + + + P + + + +GI Sbjct: 355 AGTGQYIEMSHPGYTAITSSFNAGTGNTAQSFHNVTMPAAAGTGFFNKSMSLKDYGTSGI 414 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 N + A + ISE Sbjct: 415 NPGDDIEYSAVKIPASAGNKAKWHVTAVSGGKTYSGDISEG 455 >gi|297568486|ref|YP_003689830.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] gi|296924401|gb|ADH85211.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] Length = 636 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 9/266 (3%) Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 VY S+G + E F E ++ + Sbjct: 378 WNQVYDSNGQQVQEGD----TFIFQGLNHQGEEVTSTYVVDYGERVEDLMLQLEADFNVT 433 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQG 333 +R+ + Q +++ I S + D + + P + + +L Q Sbjct: 434 ALLRNGRL-ELQANDPGESQMAITSVTYLDAAGNSPADNPDLAQPFGEQGAEFALELGQD 492 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + Y ++ S + + ++ ++ +Y + + + +A Sbjct: 493 MELSPLRTTNYATSSSTIFQDQDGYGAGVLQNVSVKPDGTIVGNYSNGQSHDQAQVMLAD 552 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L+ + N + +S + VF + S V+L + + L Sbjct: 553 FANYHGLIPGSNN--TYQASAQSGDPVIGTPGSGVFGQVLGSSLEGSNVDLARQFADLTM 610 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + ++K I D++ QTL+ Sbjct: 611 TQRIFQANSKSITTADEIHQTLMRLK 636 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 55/237 (23%), Gaps = 15/237 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52 MSL + + N+ + A + N+ N + +Y T + Sbjct: 1 MSLHNMMFNGMSGINSMAGNMAVLGDNVANINTVSYKNSQTTFQNVLTSSQDRFHEVGNG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSL 111 ++ +KN L + A + F + + + + + + Sbjct: 61 SQIQAISKNFRPGPLEQTTKATDMAIGGKGFFMVNDYNGETLYTRDGQFDLKVEDYTPAG 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQ------NFNTSAREVQKIRADADKEIELEISNLRR 165 + + +D Q ++ + + + + + Sbjct: 121 FYNLVTPAGYRVQGLNLDYGNGNGQPGDILVRRDSLPQATENVTLALNLQSSAAPPTDTT 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 L E + D I T + ++ Sbjct: 181 SLYESWNGAATPPLAAGAYDYQTSIEAYDDQGQSFPLNIFFDHTDNPQEREFLITHD 237 >gi|194014627|ref|ZP_03053244.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] gi|194013653|gb|EDW23218.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] Length = 263 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 5/223 (2%) Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 VS S+ + + + + +D++ +++D Sbjct: 45 VSQTISSSGGPTNNSGSINSKQVGLGSSLSSIDKIMSAGASQNTDRDYDFY-INGDGFFR 103 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 I + L + ++ N L G G I+ Sbjct: 104 IEKQGEVLYTRAGNFTRDSEGSLTTSDGN-YVLGMNGQKITIPDGISSVSVGPDGTISVV 162 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYS 437 ++ ++N + + L + N + + S + + + I Sbjct: 163 ENNVSRNVGQVSLVSFSNAAGLDKVGENL--YRQTLSSGAPSNPIVPGEQGTGIIQTGRL 220 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L +E + +I ++ + + K I +D++LQ L+ + Sbjct: 221 EMSNVDLTDEFTEMIIAQRGFQSNAKTITTSDEILQELVNLKR 263 >gi|323341378|ref|ZP_08081622.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091255|gb|EFZ33883.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 301 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 74/280 (26%), Gaps = 12/280 (4%) Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 +N G LF+ + N + + + + +G Sbjct: 24 NNVSNVNTHGFKAGRVLFQDMVSQNTTSASAPGLGLGGVNGKQVGLGMQTGAVDTMTGRG 83 Query: 271 KIKALLQIRDSVVP---------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 +++ Q D + D + ++D + Sbjct: 84 NMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYYTRDGAFKRDSQGLLVNSNGYHVKGQ 143 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 K ++ + S L D +++ + Sbjct: 144 PTKGNIPAAWDNNFKSENYFGNPNATGSNLADINIPETVNGQRFESVTIDNSGLVVAKYG 203 Query: 382 FNK-NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + +A N L + N+ N S + + + Sbjct: 204 DTRYAMGKIELAKFNNPSGLKKSGSNNFSV--TNNSGDPNFATPGLGGTGTLESGFLEMS 261 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L ++ S +I ++Y +++ I +D+MLQ LL + Sbjct: 262 NVDLADQFSQMIIASRAYQANSRSITTSDEMLQELLNLKR 301 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 10/144 (6%), Positives = 28/144 (19%), Gaps = 19/144 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51 +L + Q I N+ N + + + + Sbjct: 1 MLRSLYSGVSGMKGFQTQMDVIANNVSNVNTHGFKAGRVLFQDMVSQNTTSASAPGLGLG 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS--------ADDHYNNSPTHY 103 V + M + + + Q + + D + Sbjct: 61 GVNGKQVGLGMQTGAVDTMTGRGNMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYYTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTV 127 + + N + + Sbjct: 121 DGAFKRDSQGLLVNSNGYHVKGQP 144 >gi|238764398|ref|ZP_04625348.1| Flagellar hook-associated protein 1 [Yersinia kristensenii ATCC 33638] gi|238697424|gb|EEP90191.1| Flagellar hook-associated protein 1 [Yersinia kristensenii ATCC 33638] Length = 206 Score = 81.2 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 5/187 (2%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + + P L + N ++ + + L Sbjct: 23 WQVTRVSDNTKVPTTAGTDKDGKPTLNFDGIAVSVTNGTQGPEAKDKFTIKTVSNVAANL 82 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + S G D +N + ++ T + + Sbjct: 83 QVAITDSSMIAAGGTADGGASDNVNAQALLNLQTQ-----KLVDGKATFSGAYAGLVSNV 137 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + +S + GVNL EE L + +Q Y + ++I + Sbjct: 138 GNQTATAKTNSTAQANIVKQLSAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTASTL 197 Query: 472 LQTLLEG 478 LL Sbjct: 198 FNALLSL 204 >gi|291280520|ref|YP_003497355.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755222|dbj|BAI81599.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 262 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 66/212 (31%), Gaps = 2/212 (0%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 G A + + +++ ++ ++ + F + D Sbjct: 53 GGVTAAGINHPTGIQIGLGSKVVSTEKIFSQGNFQQTGNPLDIAIEGDGFFQVTLPDGTI 112 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + S + + + +L + + + ++ Sbjct: 113 GYTRNGSFKVDADGNLVTAEGYLLEPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQ 172 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A L +N +L+ S + + F +++ VN+ EE+ Sbjct: 173 IELAKFINPSGLRSIGKNI--YLQTAASGEPTTGIPGEDGFGTLAQGILEMSNVNVVEEM 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y I++K I D+MLQ + + Sbjct: 231 VNLITGQRAYEINSKAIQTGDEMLQIVNNLKR 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/236 (8%), Positives = 46/236 (19%), Gaps = 31/236 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 +L A + +I N+ N + + + VT Sbjct: 1 MLRTLWTAASGMTTQQINIDNISNNLANVNTAGFKKSRVNFEDLLYQELKPAGGVTAAGI 60 Query: 56 R--------------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 S K + + F + Sbjct: 61 NHPTGIQIGLGSKVVSTEKIFSQGNFQQTGNPLDIAIEGDGFFQV------TLPDGTIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIEL 158 + + +L + + V T + + + Sbjct: 115 TRNGSFKVDADGNLVTAEGYLLEPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQIE 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDA-HDFLDQRDVLLQKISEIIGISTIVRN 213 + N ++ + + D L Q I E+ ++ + Sbjct: 175 LAKFINPSGLRSIGKNIYLQTAASGEPTTGIPGEDGFGTLAQGILEMSNVNVVEEM 230 >gi|291484181|dbj|BAI85256.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. natto BEST195] Length = 264 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 70/243 (28%), Gaps = 3/243 (1%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N TV + + + +V + G + I + + + Sbjct: 25 NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + S + + I G + + +GG++ Sbjct: 83 SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ + + L + RN N Sbjct: 143 KIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGRNLYRE-SLNSGT 201 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + V+L +E + +I ++ + ++K+I +D++LQ L+ Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261 Query: 478 GVK 480 + Sbjct: 262 LKR 264 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + I NI N + + + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 +SA + D + + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149 >gi|187778756|ref|ZP_02995229.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] gi|187772381|gb|EDU36183.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] Length = 350 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 35/317 (11%), Positives = 81/317 (25%), Gaps = 14/317 (4%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + F Q +S+ + +T N G L V Sbjct: 36 DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVG--LGVQVAGIF 93 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T + + IDG + + + ++ Sbjct: 94 TKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDDEGAINGGTMEVSFTKD 153 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + I + + G I D + + +++ + L Sbjct: 154 GSFNLDEDGSLITSDGLRIMGYAIDSAAITKDATTGKIKVGFKNADEDPKADATKLVPLA 213 Query: 356 S------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S+K + ++ D + +A L + +N Sbjct: 214 IPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYR 273 Query: 410 WLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + V+L EE + +I +++ K Sbjct: 274 NSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGK 333 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D++LQ L+ + Sbjct: 334 MITTGDEILQELVNLKR 350 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 25/142 (17%), Gaps = 26/142 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 17 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 76 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + +D ++ Sbjct: 77 GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 133 Query: 100 PTHYISKLRDSLESYSKNLSED 121 + S Sbjct: 134 SGDDEGAINGGTMEVSFTKDGS 155 >gi|307719964|ref|YP_003891104.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] gi|306978057|gb|ADN08092.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 50/438 (11%), Positives = 110/438 (25%), Gaps = 4/438 (0%) Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 SP T ++ + N + Sbjct: 275 GSSPATATASYTILAANTAAQNASVTAAAINALTATTGITATIDSSNKIVLTNTNGNSSA 334 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD-KEIELEISN 162 + + + + N + T + A ++ AD ++ +N Sbjct: 335 SHNIDIASVTGANNPFDASEDDTTAYKYSYNSASPTVVAGSNKEFTTIADLRQALENQAN 394 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + V+ + S D+ V S I + RN + + Sbjct: 395 SEAGATGIKVIVNDQGKIELSNTDSGSIDLNFKVTGISGSGITENTRFTRNMEALNTVLA 454 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 GTT +S + + ++ + + Sbjct: 455 AGTTGKAFSQAFNAATHSSSIDIFDSLGSKHTLRMEFRKTALDTTTGSTWSIVITVPEPA 514 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 E + I ++ N NV D L G + Sbjct: 515 TIDTIAPTYE-KKGSIRFNNDGSLATYNPPNVSFSGNNGSAPDQQVNLSFGTANKFDGMT 573 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S + + L+ + + + +A N L Sbjct: 574 SFDSRSATSGISQDGYTGGDLVGIRIDQSGTLVGSFSNGRSFGLAQIGMAKFTNNEGLST 633 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N +++ S + + I + V+L L+ LI +++ + + Sbjct: 634 EGGNV--YVQTANSGDPIIGTAATAGRGFIQSAALEASNVDLSRALTQLIIIQRGFQANG 691 Query: 463 KLIMFTDKMLQTLLEGVK 480 K I +D++LQTL+ + Sbjct: 692 KTITTSDQLLQTLIGLKQ 709 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/430 (6%), Positives = 82/430 (19%), Gaps = 29/430 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + NI N + + + Sbjct: 1 MLKSLFSGVSGLQSHQVAMDVESNNIANVNTVGFKYSRANFSDLLAQTKAIATAPQGQLG 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + T S + + F + + D N Sbjct: 61 GKNPVQVGLGSTVSSMTRIFSQGSIQNSDKNTDVAIQGDGFFII-----SPDGGNTYKYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEIS 161 + + + I + D V + + + + + Sbjct: 116 RAGDFKFDAGGNFVDNNGFIAQGWLRDPVTGKVDSTAPIENINIAPGLTTPAQPTQEVVL 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + S +G+ Sbjct: 176 KANLNSGAIVESFSPAYQVPTGAPTDPALPAIDGNGNPIESGNVGVMFNESG---EAFSL 232 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 DG ++ + + ++ + + +V + + GS+ + ++ Sbjct: 233 QDGQGVWASFISSTSTSTNSAQGSDTALAADEAETIVFNLDPGSSPATATASYTILAANT 292 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + + + N + + + Sbjct: 293 AAQNASVTAAAINALTATTGITATIDSSNKIVLTNTNGNSSASHNIDIASVTGANNPFDA 352 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + K DL + N + I + + Sbjct: 353 SEDDTTAYKYSYNSASPTVVAGSNKEFTTIADLRQALENQANSEAGATGIKVIVNDQGKI 412 Query: 402 EYARNSIGWL 411 E + G + Sbjct: 413 ELSNTDSGSI 422 >gi|326796597|ref|YP_004314417.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] gi|326547361|gb|ADZ92581.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] Length = 565 Score = 81.2 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 44/417 (10%), Positives = 102/417 (24%), Gaps = 18/417 (4%) Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + S E + S+ + + +Y++ +++ + A+ N Sbjct: 150 QATTSVEIQANLNSSAEDVPPYISQSFDPSDTDTYTYAQTVTDSANNVVTLYYAKSETPN 209 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 V D L + ++ ++ N A + + Sbjct: 210 TYQVYMTVNGELQDDSGNAFLGDYFVTFDDADGSLTNTAYSAVYSGTTEPTVGDIPTVAP 269 Query: 198 LQKIS---EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + + + V N + G S+ + + Sbjct: 270 ITPTTIPLNYADATATVNNTPLGDINLGAGLDPSAGELTTSEGHARESFDPQDANTYTYN 329 Query: 255 DGVVVSSNQGSAVPKG---------KIKALLQIRDSVVPIFQNQLDEMARVLI----GSF 301 + + + G A G + D L ++ Sbjct: 330 NTNTIYDSLGEAHTVGYYFIKQGEDNTWEVKVTVDGETTDANGNLYLPEDTIVKFDSSGN 389 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P I D G E + + S Sbjct: 390 LTGTFTGYEPYTTPVPATDLTITGWDPTNLTGELEISFDDSTQYAITSTDTFSQDGFAAG 449 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + L+ Y + +A + L GW+ + S + ++ Sbjct: 450 ELQGVSFDEDGFLVATYTNQQTATLGQIALATFDNTDGLNP--SGDTGWVASSSSGAANI 507 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I V+L EL LI+ +++Y ++K + + + QT++ Sbjct: 508 GKANTGTLGSIKGGSLEESNVDLTSELVALIEAQRNYQANSKTLETENTVTQTIINL 564 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 37/415 (8%), Positives = 82/415 (19%), Gaps = 24/415 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVT 54 FN A + ++ NI NAD + + + V+ Sbjct: 2 GFNTALSGIKASADYLGVTGNNIANADTTGFKKSRIEFGDLYNTNVIGSGSSNTIGSGVS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ + + + F + + + E Sbjct: 62 VNNVAQDFSAGNYNDTGNNLDVAIDGSGFFVVDQGGVQT-------YTRAGDFKLDEEGN 114 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + V + + ++ + + S V Sbjct: 115 LVTNDGGFVQGY-----NSVNGSIGGTLENLKVPTERIAPQATTSVEIQANLNSSAEDVP 169 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 I Q + + N V T +G ++ Sbjct: 170 PYISQSFDPSDTDTYTYAQTVTDSANNVVTLYYAKSETPNTYQVYMTVNGELQDDSGNAF 229 Query: 235 IN-FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + S +N + ++ ++ Sbjct: 230 LGDYFVTFDDADGSLTNTAYSAVYSGTTEPTVGDIPTVAPITPTTIPLNYADATATVNNT 289 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 I + DP AG G N + TI + + Sbjct: 290 PLGDINLGAGLDPSAGELTTSEGHARESFDPQDANTYTYNNTNTIYDSLGEAHTVGYYFI 349 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + V D + + FD + T E + Sbjct: 350 KQGEDNTWEVKVTVDGETTDANGNLYLPEDTIVKFDSSGNLTGTFTGYEPYTTPV 404 >gi|451871|gb|AAB59019.1| flagellar hook-filament junction protein [Bacillus subtilis] Length = 129 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 18/128 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 S A+ + ++ N+ NA+ Y R+ Sbjct: 3 STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + D +++ G + E + ++ ++ + Sbjct: 63 QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121 Query: 105 SKLRDSLE 112 + +SL+ Sbjct: 122 NSFWNSLQ 129 >gi|256059804|ref|ZP_05449999.1| flagellar hook protein FlgE [Brucella neotomae 5K33] gi|261323784|ref|ZP_05962981.1| flagellar hook protein flgE [Brucella neotomae 5K33] gi|261299764|gb|EEY03261.1| flagellar hook protein flgE [Brucella neotomae 5K33] Length = 396 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLIVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|148558720|ref|YP_001258004.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] gi|148370005|gb|ABQ62877.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] Length = 377 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 133 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 190 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 191 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 250 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 251 QAVINGQAPSSIKGMDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 308 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 309 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 368 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 369 MDVLVNLKR 377 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 39/392 (9%), Positives = 99/392 (25%), Gaps = 30/392 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAG------- 53 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ S + ++ ++ N + Sbjct: 54 -----QYNSGSVLTDLAIDGNGYFVVQ------GPGGSTYLTRAGSFVPDKNGDLVNSAG 102 Query: 121 DILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L ++ + + + + Sbjct: 103 YYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHKT 162 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 163 SLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNVA 222 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + +++ + V + Q + KG +V Sbjct: 223 VNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGMDVGNDGAVVAVYENGTQ 282 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 ++ + + ++ + + +P D G + + Sbjct: 283 KVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADIA 342 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 343 QELTDMIEAQRSYTANSKVFQTGSELMDVLVN 374 >gi|163845457|ref|YP_001623112.1| flagellar hook protein FlgE [Brucella suis ATCC 23445] gi|163676180|gb|ABY40290.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 396 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASMVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDDNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + + + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|213028802|ref|ZP_03343249.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 293 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 9/250 (3%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + VP F ++ + + D + + K K Sbjct: 52 DPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT 111 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + L + + G G + Q Sbjct: 112 APTTASTTLKFNENGILESGGTVNITTGTIN-------GATAATFSLSFLNSMQQNTGAN 164 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + K + ++ +Y + + +A N L N Sbjct: 165 NIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV- 223 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 W S L F ++ V+L +EL +I +++Y + + I Sbjct: 224 -WAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 282 Query: 469 DKMLQTLLEG 478 D++L TL+ Sbjct: 283 DQILNTLVNL 292 >gi|311068150|ref|YP_003973073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310868667|gb|ADP32142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 264 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 20/258 (7%), Positives = 68/258 (26%), Gaps = 6/258 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI-RDSVVPI 285 + + + + + V + G +S Sbjct: 9 ISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGAQVGGTNSKQIG 68 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + S ++ + + + G Sbjct: 69 LGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYTRAGNFYLDNEGKLVT 128 Query: 346 SNPSFLRDGGSVSKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + +++ G + +N + + + + + L + Sbjct: 129 GDGYYVQKLGGGEITIPKDAQNFTIGPDGSVSIVGAGGEKIDGGQIGIVTFANSDGLDKI 188 Query: 404 ARNSIGWLEKNRSDSHDLHM-KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + E + S + + + V+L +E + +I ++ + ++ Sbjct: 189 GNSL--YRESSNSGTPSAANIPGDGGTGELKSGFLEMSNVDLTDEFTEMIVAQRGFQSNS 246 Query: 463 KLIMFTDKMLQTLLEGVK 480 K+I +D++LQ L+ + Sbjct: 247 KIITTSDEILQELVNLKR 264 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 13/140 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51 +L + N + I NI N + + + + + V Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGAQVG 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRD 109 + + S Q + + D+ + Sbjct: 61 GTNSKQIGLGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVID 129 E + K Sbjct: 121 DNEGKLVTGDGYYVQKLGGG 140 >gi|237753142|ref|ZP_04583622.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] gi|229375409|gb|EEO25500.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] Length = 758 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 35/358 (9%), Positives = 86/358 (24%), Gaps = 4/358 (1%) Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 V + + + ++ + + L D +A+ Sbjct: 403 NRVKAFGGDSTAYGQAAGQNAGRVPDNYGESAYGVKITLNSLGQFEINNQDDGIKASATA 462 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + D L +S + + + L E + Sbjct: 463 GPGGFHNPEFDSLNIFVSAFNDENNTTNVLFKNQMKAMNTGVLVEGGQVTTTAGLRMATF 522 Query: 245 VTSESNPIFIDGV--VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + + + + ++ ++ + + + + Sbjct: 523 AQTVDIYDSLGNKHEFTMQFEKVGDSEWSFRIIVPEPAELIGSSAQRPNILEGGSVTFGE 582 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + N ++ + +L G G + Sbjct: 583 NGELLGVNPSSIQFKPNTGASFPQNIELDFGKGGGFDGLTSTSRESQAQNVNGDGYASGV 642 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 LI + + N +A L E N E S + Sbjct: 643 LKEYYFDATGTLIGSFDNGQNLALAQVAIATFANYEGLQESGSNLFA--ESANSGRATIG 700 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ S +L L+ LI V++ + ++K I D++L TLL + Sbjct: 701 TAGTGGRASVAASKLEMSNADLSRGLTQLIVVQRGFQANSKSITTADQVLNTLLGLKQ 758 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 36/434 (8%), Positives = 83/434 (19%), Gaps = 49/434 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + NI N + + + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTTGFKYSRADFSTMVSQTKRSATIPYAGYG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + K L + + ++ Sbjct: 61 GVNDFSVGLGTGIETTTKIFEQGSLQNTDRKGDLALEGKGMFVVSNN-----GGYSNMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAE----------EVVQNFNTSAREVQKIRADA 152 N S I+ V D ++ V + R Sbjct: 116 RDGAFMFDAVGNLVNTSGFIVQGWVRDLSKLNCACGSDSLNRVDSTGPVGNITIDPRLTI 175 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS---- 208 + + S N S + D L + I Sbjct: 176 PAKKTGVVVGNINLTSGNKTENIGCPSPLDSSSANNYVAGGLDRLYDTSDKQHEIPQDMG 235 Query: 209 -TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV--VVSSNQGS 265 M + G + E + + + + I+G +++ + Sbjct: 236 VMFNDAGEAMRLQEGQGIWISYQTATAEPLELGGNIPAGAVTTTVNINGQEITWTNDPTA 295 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-------GNSENVPGLF 318 + A I + + + +++ + ++ D N Sbjct: 296 NGSSHLLAAQRAINNYKDKTGVEAIIQGDTLVLQNKNQLDGDGRNKNIRATGFNNGIFDG 355 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 G D D + + R + + + + Y Sbjct: 356 GGFGGNDADATVTTAFEYRYSKQTTPSLDDGQFRSTEDLRILMQHDANRVKAFGGDSTAY 415 Query: 379 CDSFNKNFIFDPVA 392 + +N P Sbjct: 416 GQAAGQNAGRVPDN 429 >gi|161621182|ref|YP_001595068.1| flagellar hook protein FlgE [Brucella canis ATCC 23365] gi|254702383|ref|ZP_05164211.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|260568714|ref|ZP_05839183.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261752946|ref|ZP_05996655.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|161337993|gb|ABX64297.1| flagellar basal body FlaE domain protein [Brucella canis ATCC 23365] gi|260155379|gb|EEW90460.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261742699|gb|EEY30625.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] Length = 396 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 95/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + I S N + Sbjct: 61 LTDVHYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + + + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|153951692|ref|YP_001399003.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. doylei 269.97] gi|152939138|gb|ABS43879.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] Length = 875 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/361 (9%), Positives = 97/361 (26%), Gaps = 5/361 (1%) Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + +A + ++ + ++N+ + T+ Sbjct: 517 LQRDARYGVDYDGSGKFAAADVNENVKVVVNSSGAFSLTNVNKTTQSPTLSTGNNNIGQG 576 Query: 183 S-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + + + + + G + ++ ++ Sbjct: 577 PLNFTSKNMNFNITAYTDERGTVSTNDAFTKIFKGLDGSFPTGNQVKQSEILKLSAFSAG 636 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + ++ V + + + + + + Sbjct: 637 LEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINATGEGPNNIIVGTARFN 696 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 ++ N + + KL G S + S + Sbjct: 697 NDGSLSNYNPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYPSG 756 Query: 362 LWNVKNLAGY--PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + + +++ + + +A + N L E N + S + Sbjct: 757 NLKPEGIRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNL--FKVTANSGNI 814 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + V+L L+ LI +++ Y ++K I +D+MLQTL++ Sbjct: 815 VVGEAGTGGRGEMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLK 874 Query: 480 K 480 + Sbjct: 875 Q 875 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/438 (7%), Positives = 85/438 (19%), Gaps = 46/438 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQ---GSVQITDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAQSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L + + + K + + I + Sbjct: 173 VAIKANLNSGLNIGTASTPLYSLDSVHGFNQKTGETKDENDVGTTQFYTTSKNAIEVAEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK- 271 + ++ + G L + I ++ T++ D + + + G Sbjct: 233 GVDAGALFNAKGQGLNLRDGQGIWVSYTDAKYSTNKVGVNAFDPNLQQNQTVAFWGNGNQ 292 Query: 272 -------IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 I ++ D++ I + + E + Sbjct: 293 KTRLDIVINGVVIQTDTIGSIDEAITYINTFTVPTDAREGTGVRAVKNADGSGIDFINTN 352 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + N + N P + + + Sbjct: 353 SDGTTDNMKNINLVVTNANTAGELWNAVWDTNNKTFSFNQGNNGGQQPTINKNGSSLWTA 412 Query: 385 NFIFDPVAGINTNVTLLE 402 N + N +TL Sbjct: 413 NTMTPNPPNANNAITLNG 430 >gi|39912|emb|CAA39528.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 3/243 (1%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N TV + + + +V + G + I + + + Sbjct: 25 NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + S + + I G + + +GG++ Sbjct: 83 SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ + + L + N N Sbjct: 143 KIPTDAQTFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGSNLYRE-SLNSGT 201 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + V+L +E + +I ++ + ++K+I +D++LQ L+ Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261 Query: 478 GVK 480 + Sbjct: 262 LKR 264 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + I NI N + + + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 +SA + D + + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149 >gi|23500854|ref|NP_700294.1| flagellar hook protein FlgE [Brucella suis 1330] gi|38257619|sp|Q8FUS9|FLGE_BRUSU RecName: Full=Flagellar hook protein FlgE gi|23464518|gb|AAN34299.1| flagellar hook protein FlgE [Brucella suis 1330] Length = 396 Score = 80.8 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + + + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|188997557|ref|YP_001931808.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] gi|188932624|gb|ACD67254.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] Length = 266 Score = 80.5 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 55/226 (24%), Gaps = 28/226 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + + I NI N + + R Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + L + + + F ++ + Sbjct: 61 RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIE------MPDGSEAF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160 + E Y N L + +A E V+ + +V +R ++ E+ Sbjct: 115 TRAGNFQIDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEV 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 N++ + AI +A + D ++ Sbjct: 175 GNIKLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQ 220 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 2/164 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 E + + DG + I + S + ++ Sbjct: 100 EGFFKIEMPDGSEAFTRAGNFQIDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKV 159 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + + L N + S + F Sbjct: 160 IVVRNSGGQQTTEEVGNIKLYKFINPAGLKAIGGNLFKY--TEASGQPIEGDPNTDAFGK 217 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ + VN+ EE+ LI +++Y +++K I+ D+ML+T+ Sbjct: 218 LTQGFLEMSNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLKTV 261 >gi|313672412|ref|YP_004050523.1| flagellar basal-body rod protein flgg [Calditerrivibrio nitroreducens DSM 19672] gi|312939168|gb|ADR18360.1| flagellar basal-body rod protein FlgG [Calditerrivibrio nitroreducens DSM 19672] Length = 262 Score = 80.5 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 50/185 (27%), Gaps = 4/185 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + D + + + ++ + Sbjct: 80 IFGQGNFQQTGNQLDIAIEGDGFFQVTMPDGTIGYTRNGSFKLDSNGNIVTAEGYLLEPA 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + G ++ +A L RN + Sbjct: 140 IAVPENATSIIIGQDGTVSVTIPGDTNPTELGAIELARFINPSGLKNIGRNL--YQPTAA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S F +++ VN+ EE+ +I +++Y +++K I +D+MLQ + Sbjct: 198 SGEPVTGAPGTDAFGTVAQGILEMSNVNVAEEMVNMITGQRAYELNSKAIQTSDEMLQVV 257 Query: 476 LEGVK 480 + Sbjct: 258 NNLKR 262 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 11/173 (6%), Positives = 28/173 (16%), Gaps = 27/173 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + A + +I N+ N +N + + Sbjct: 1 MFRAMWTAASGMTAQQMNIDNIANNLANVNNIGFKKSRIHFEDLLYQEMRPAGGPTAAGI 60 Query: 47 --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + K + + F + Sbjct: 61 NHPTGIQIGLGTKVVATEKIFGQGNFQQTGNQLDIAIEGDGFFQV------TMPDGTIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + +L + I D + Sbjct: 115 TRNGSFKLDSNGNIVTAEGYLLEPAIAVPENATSIIIGQDGTVSVTIPGDTNP 167 >gi|254699262|ref|ZP_05161090.1| flagellar hook protein FlgE [Brucella suis bv. 5 str. 513] gi|254706497|ref|ZP_05168325.1| flagellar hook protein FlgE [Brucella pinnipedialis M163/99/10] gi|254711218|ref|ZP_05173029.1| flagellar hook protein FlgE [Brucella pinnipedialis B2/94] gi|254711818|ref|ZP_05173629.1| flagellar hook protein FlgE [Brucella ceti M644/93/1] gi|254714887|ref|ZP_05176698.1| flagellar hook protein FlgE [Brucella ceti M13/05/1] gi|256015898|ref|YP_003105907.1| flagellar hook protein [Brucella microti CCM 4915] gi|256030153|ref|ZP_05443767.1| flagellar hook protein FlgE [Brucella pinnipedialis M292/94/1] gi|256158332|ref|ZP_05456236.1| flagellar hook protein FlgE [Brucella ceti M490/95/1] gi|256252734|ref|ZP_05458270.1| flagellar hook protein FlgE [Brucella ceti B1/94] gi|260166795|ref|ZP_05753606.1| flagellar hook protein FlgE [Brucella sp. F5/99] gi|261216577|ref|ZP_05930858.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261219813|ref|ZP_05934094.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|261313950|ref|ZP_05953147.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261318810|ref|ZP_05958007.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261319447|ref|ZP_05958644.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261749702|ref|ZP_05993411.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|261756173|ref|ZP_05999882.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|265987183|ref|ZP_06099740.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] gi|265996846|ref|ZP_06109403.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|255998558|gb|ACU50245.1| flagellar hook protein [Brucella microti CCM 4915] gi|260918397|gb|EEX85050.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|260921666|gb|EEX88234.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261292137|gb|EEX95633.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261298033|gb|EEY01530.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261302976|gb|EEY06473.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261736157|gb|EEY24153.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|261739455|gb|EEY27381.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|262551143|gb|EEZ07304.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|264659380|gb|EEZ29641.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] Length = 396 Score = 80.5 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|237755437|ref|ZP_04584062.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] gi|237692401|gb|EEP61384.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] Length = 266 Score = 80.5 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 55/226 (24%), Gaps = 28/226 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + + I NI N + + R Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + L + + + F ++ + Sbjct: 61 RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIE------MPDGSEAF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160 + E Y N L + +A E V+ + +V +R ++ E+ Sbjct: 115 TRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEV 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 N++ + AI +A + D ++ Sbjct: 175 GNIKLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQ 220 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 2/164 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 E + + DG + + + S + ++ Sbjct: 100 EGFFKIEMPDGSEAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKV 159 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + + L N + S + F Sbjct: 160 IVVRNSGGQQTTEEVGNIKLYKFINPAGLKAIGGNLFKY--TEASGQPIEGDPNTDAFGK 217 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ + VN+ EE+ LI +++Y +++K I+ D+ML+T+ Sbjct: 218 LTQGFLEMSNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLRTV 261 >gi|221309506|ref|ZP_03591353.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|221313830|ref|ZP_03595635.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318753|ref|ZP_03600047.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. JH642] gi|221323025|ref|ZP_03604319.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. SMY] gi|255767369|ref|NP_389511.2| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|321315395|ref|YP_004207682.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|239938626|sp|P23446|FLGG_BACSU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|142919|gb|AAA22444.1| flgG [Bacillus subtilis] gi|225184996|emb|CAB13502.2| flagellar hook protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021669|gb|ADV96655.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 264 Score = 80.5 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 3/243 (1%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N TV + + + +V + G + I + + + Sbjct: 25 NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + S + + I G + + +GG++ Sbjct: 83 SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ + + L + N N Sbjct: 143 KIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGSNLYRE-SLNSGT 201 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + V+L +E + +I ++ + ++K+I +D++LQ L+ Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261 Query: 478 GVK 480 + Sbjct: 262 LKR 264 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + I NI N + + + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 +SA + D + + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149 >gi|320529456|ref|ZP_08030543.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] gi|320138293|gb|EFW30188.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] Length = 661 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 44/469 (9%), Positives = 122/469 (26%), Gaps = 31/469 (6%) Query: 40 DTMTTISPENVTVVTQRSENKNM-------FDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 T + V ++ + S+ + + Sbjct: 196 SVSVTTTGGTKITVDSTADYDFASAATGTPLNGKKLWTSTVDSVTQTATGQIKKMVLEGG 255 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + ++ T + + + +N + I G + + ++ A Sbjct: 256 TGNDDDPLTRFATAGSTLSLTAVENGTYKIGGTYKLTGTIDTATLQADGTIKLTFQAATP 315 Query: 153 DKEIELEISNLRRFLSELTV-----VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 ++ +N IK TA + + + L+ + I Sbjct: 316 PAVTPPDVIVPAPPSGTYKHGDTFTLNLKIKEMTAQTGAQINCDNGQSDKLEAADGDVDI 375 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFE---KMNSYTVTSESNPIFIDGVVVSSNQG 264 + V+N + + + + G S Sbjct: 376 NKAVQNYVRKGRTSDGNVAAVARRGAVKSVTLSLDDGTSVEGLPGQGYKVGGDYYPSYVT 435 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + +I +N+ + ++ ++ + Sbjct: 436 NITTYDSRGGSHRIPMLFTKKGENEWKMLFGNGRKTYQYEEEDGTITTMRFSTIEDLKFT 495 Query: 325 DLDNKLCQGISETICVNPQYRSN-------------PSFLRDGGSVSKKFLWNVKNLAGY 371 S + + + + KK + ++ Sbjct: 496 TKGRYESGTASIATTHAGADDGSITCNLAGLTQYVGNNTIVGTTNGHKKGVLTSVSIDQS 555 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + Y ++ + VA N L + + + E N S ++ + + Sbjct: 556 GVITGTYDNNVRQAEAQIAVAQFNNATGLTKMGGSL--YQESNNSGPANIKTANDLGV-S 612 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ S VN+ ++ S +I ++ + ++K+I +D+ML+TL+ + Sbjct: 613 MTPSALEMSNVNIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 661 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 30/439 (6%), Positives = 76/439 (17%), Gaps = 25/439 (5%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSE--NKNMFDKVL 67 I NI N + + V + ++ L Sbjct: 1 MDVIGNNIANVNTTGFKASRVTFADMISQNLSGASSPGTTVGGTNPKQIGLGTSVSSVDL 60 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + N + + + Sbjct: 61 LFNDGVAQSTGKNTDVALSGNGTFVVKKGNETYYTRNGAFEFDADGNYVMPGSGHYVQGW 120 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 + N+E + + E + + + Sbjct: 121 MANSEGKLITSGNVGNIKIPKGKSMNSEPTTTATYTNNLNASTKRSIVKSVVVRYADGTT 180 Query: 188 HDFLDQRDVLLQKISEIIGIS------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + D + + T+ + + GT L + + Sbjct: 181 ENVTDYTPPPEDGKPSVSVTTTGGTKITVDSTADYDFASAATGTPLNGKKLWTSTVDSVT 240 Query: 242 SYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVP-----IFQNQLDEMAR 295 + G + G +L + + +D Sbjct: 241 QTATGQIKKMVLEGGTGNDDDPLTRFATAGSTLSLTAVENGTYKIGGTYKLTGTIDTATL 300 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G+ A P I K + + + + + Sbjct: 301 QADGTIKLTFQAATPPAVTPPDVIVPAPPSGTYKHGDTFTLNLKIKEMTAQTGAQINCDN 360 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 S K ++ + N+ + VA ++ + Sbjct: 361 GQSDKLEAADGDVDINKAVQNYVRKGRTSDGNVAAVARRGAVKSVTLSLDDGTSVEGLPG 420 Query: 416 SDSHDLHMKSQVVFNHISE 434 +I+ Sbjct: 421 QGYKVGGDYYPSYVTNITT 439 >gi|289627764|ref|ZP_06460718.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866423|gb|EGH01132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 586 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 45/423 (10%), Positives = 114/423 (26%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + S G + + LK+ S I Sbjct: 182 ATYTRVIGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175 + + + ++ +++ +++ ++KI + + + N Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + LD D L+ + S + ++ D + + Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + NS+ + + + + + + + + + Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + +GI+ Q+ + S Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAD 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRVIGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|261886055|ref|ZP_06010094.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 262 Score = 80.5 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 68/255 (26%), Gaps = 6/255 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V + + + + + + + Sbjct: 11 GMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYR 345 + A + N + V I+ D + Sbjct: 71 GVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGSIVN 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S+ L ++ + G ++ + +A L Sbjct: 131 SDGYRLLPEMNIPADATQISVGVDGTVSVLQP-GNQEMTQIGQIELANFINPSGLHAMGD 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N +LE S + ++ F I + + V L EE++ LI +++Y ++K I Sbjct: 190 N--NFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLITGQRAYEANSKAI 247 Query: 466 MFTDKMLQTLLEGVK 480 D+MLQT+ + + Sbjct: 248 TTADEMLQTVNQLKR 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/239 (7%), Positives = 44/239 (18%), Gaps = 37/239 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y + Sbjct: 1 MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + F ++ Sbjct: 61 MSPTGMEVGLGVRPTAITKV---FGQGYFKETGNNLDMVIAGNGFFQIQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + N L + A+ + + + Sbjct: 112 TAYTRNGAFKLDGDGSIVNSDGYRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIG 171 Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 +I L + N + + + + D + Q E+ + + Sbjct: 172 QIELANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEM 230 >gi|288958564|ref|YP_003448905.1| flagellar hook protein [Azospirillum sp. B510] gi|288910872|dbj|BAI72361.1| flagellar hook protein [Azospirillum sp. B510] Length = 881 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 45/442 (10%), Positives = 128/442 (28%), Gaps = 12/442 (2%) Query: 42 MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + +P + R N + + + S + QS D + + Sbjct: 449 IQANAPGGAVTTSGRVANASSAANTMSSLPSVSSVAGVRQSRTVTLTGTPGDIGTQYTLS 508 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + S + + NA + T+ V + A + Sbjct: 509 VNGTAVTYSTTGEEMTMEDITAALANKINANTALPVTATAQGGVITVTAKTPASATTVNT 568 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 L + + + + + L + + T Sbjct: 569 MTGTGTITLGGTSVDVGDSYSITTRIGGVPQRFSLTLDNANIASFNTPAKVMAQLASQIT 628 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + G T+ +T + T + ++ D + G+ A + + Sbjct: 629 AAGGTVTQTGSA-------LTVTSDAAASGAVTDAPAPQFTLDQSAAAGRTPAHIGLTFG 681 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV- 340 P L ++ L+G+ + +A + + + ++ + + Sbjct: 682 KTPETVGTLTGISTALVGTGTAVSTVAEAAGSPASVTFTVDYGFGPQQITLNLGKYQKPG 741 Query: 341 --NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 S + + + + + + ++ +Y + ++ P+ N Sbjct: 742 GLTQFSGSEINVTQLVQNGAPRGQFKEVVFGENGAVMVNYDNGRSRMIAKVPIVTFNNPN 801 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + ++E + +L+ + + V++ E + +I ++ Y Sbjct: 802 ALQRESGGV--FVESEGAGKPNLNDPKLNGAGAMVANSVEASNVDIASEFTKMIVTQRGY 859 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 + + K++ +D+MLQ +L + Sbjct: 860 SANAKVLTASDEMLQEVLGLKR 881 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 55/475 (11%), Positives = 112/475 (23%), Gaps = 35/475 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ + A S+ +I NI NA Y R DT + V Sbjct: 1 MSIFGSRSSALMGLVAQSKALGNISDNIANASTAGYKRVDTTFQSMVLQSSPRNHAPGGV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN------------SPT 101 T R N L + SS Q F ++ + + + Sbjct: 61 TARPSFMNDVQGNLTSVSSNTSAAIQGQGFFSVSRLDAQTAGTIGGATGGGATGSGPNVY 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELE 159 + + S + N S L ++D VQ + +V + A I+L Sbjct: 121 TRLGDFQLSRTRHLVNSSGFALNGWLVDPVTGAVQKDRVAPVQVNSLIDKPVATSGIDLS 180 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + + + +I+ + + R ++ D Sbjct: 181 ANLPATPKAGQKIPDSSIQIFDSQGNPRTVNFKWRQQADSGWRMVVDTPGSNTKPVDGSF 240 Query: 220 -----------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + T + + I N + + S + Sbjct: 241 TGNPATVSFGQNIAGQTAVAQVNVVTIAGANTNGQDNLRIGDVYSVKIDGTSYSLKVTAD 300 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + N A VL S + + + P D + Sbjct: 301 NIGSIRTYSGLAGALANQINSASPAASVLATSSGQTIRVTARNPGTPFKLNTDVVSGAST 360 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA---GYPDLINHYCDSFNKN 385 + F V + + Y Y Sbjct: 361 VNSIVPQTSTAATASSGKIDKFQFPQSQVEVGDSFTITVNGTPISYTVTAATYQSYQTVG 420 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + +AG + G + ++++ + + + S + + Sbjct: 421 DVVSQLAGRINKALGSTVTASVAGNILSIQANAPGGAVTTSGRVANASSAANTMS 475 >gi|118475132|ref|YP_891713.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] gi|118414358|gb|ABK82778.1| flagellar basal-body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] Length = 262 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 70/255 (27%), Gaps = 6/255 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V + + + + + + + Sbjct: 11 GMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YR 345 + A + N + V I+ D + ++ Sbjct: 71 GVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGNIVN 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S+ L ++ + G ++ + +A L Sbjct: 131 SDGYRLLPEMNIPADATQISVGVDGTVSVLQP-GNQEMTQIGQIELANFINPSGLHAMGD 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N +LE S + ++ F I + + V L EE++ LI +++Y ++K I Sbjct: 190 N--NFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLITGQRAYEANSKAI 247 Query: 466 MFTDKMLQTLLEGVK 480 D+MLQT+ + + Sbjct: 248 TTADEMLQTVNQLKR 262 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/239 (7%), Positives = 44/239 (18%), Gaps = 37/239 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y + Sbjct: 1 MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + F ++ Sbjct: 61 MSPTGMEVGLGVRPTAITKV---FGQGYFKETGNNLDMVIAGNGFFQIQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + N L + A+ + + + Sbjct: 112 TAYTRNGAFKLDGDGNIVNSDGYRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIG 171 Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 +I L + N + + + + D + Q E+ + + Sbjct: 172 QIELANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEM 230 >gi|225850285|ref|YP_002730519.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] gi|225645911|gb|ACO04097.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] Length = 266 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 54/226 (23%), Gaps = 28/226 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + I NI N + + R Sbjct: 1 MIRALWTSASGMGAQQTNLDVISNNIANVNTVGFKRSRANFEDLIYQDIKDPGVMSSNET 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + L + F ++ Sbjct: 61 RVPSGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDIAIQGDGFFKIE------LPGGGEAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160 + E Y + L + +A E +V + +V +R + ++ E+ Sbjct: 115 TRAGNFQIDNEGYIVTPNGYRLSPNIQISAPETLVSISISPNGKVYVVRNEGGQQTTEEL 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 ++++ + AI +A + D ++ Sbjct: 175 TDIKLYKFINPAGLKAIGENLFKYTEASGEPIEGDPNTDGFGKLAQ 220 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 2/164 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + + G + I + S + ++ Sbjct: 100 DGFFKIELPGGGEAYTRAGNFQIDNEGYIVTPNGYRLSPNIQISAPETLVSISISPNGKV 159 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + + L N + S + F Sbjct: 160 YVVRNEGGQQTTEELTDIKLYKFINPAGLKAIGENLFKY--TEASGEPIEGDPNTDGFGK 217 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ + VN+ EE+ LI +++Y I++K I+ D+ML+T+ Sbjct: 218 LAQGFLEASNVNIVEEMVNLIVAQRAYEINSKGIITADEMLRTV 261 >gi|157692308|ref|YP_001486770.1| flagellar basal body rod protein FlgG [Bacillus pumilus SAFR-032] gi|157681066|gb|ABV62210.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032] Length = 263 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 3/132 (2%) Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 L G G I+ ++ ++ + L + N Sbjct: 134 LLGMNGQKITIPDGVSSVSVGPDGTISVVENNVSRTVGQISLVSFRNAGGLDKVGDNL-- 191 Query: 410 WLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + S + + + I V+L +E + +I ++ + + K I + Sbjct: 192 YRQTLSSGAPSNPIVPGEQGTGVIQTGKLEMSNVDLTDEFTEMIIAQRGFQSNAKTITTS 251 Query: 469 DKMLQTLLEGVK 480 D++LQ L+ + Sbjct: 252 DEILQELVNLKR 263 Score = 38.9 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 11/174 (6%), Positives = 39/174 (22%), Gaps = 14/174 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60 +L + N + + N+ N + Y + + + + Sbjct: 1 MLRSLYSGISGMKNFQSKLDVVANNVANVNTHGYKKSRITFKDMVSQTIGSSGGPTNNSG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQ-----------SFEALKEMMSADDHYNNSPTHYISKLRD 109 ++ K + SS +++ F + + Sbjct: 61 SINSKQIGLGSSLSSIDKIMSAGSSQNTNEPYDFYINGDGFFRIESQGEVLYTRTGNFDT 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 E + L + ++ + + + + + + Sbjct: 121 DSEGSLVTPDGNYLLGMNGQKI-TIPDGVSSVSVGPDGTISVVENNVSRTVGQI 173 >gi|306841276|ref|ZP_07473987.1| flagellar hook protein FlgE [Brucella sp. BO2] gi|306288678|gb|EFM60009.1| flagellar hook protein FlgE [Brucella sp. BO2] Length = 383 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 139 PAEGSTAGNFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 196 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 197 SVKNAADGVEIGTTVLNFDPTTGDIVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 256 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 257 QAAINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 314 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 315 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 374 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 375 MDVLVNLKR 383 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/387 (8%), Positives = 88/387 (22%), Gaps = 16/387 (4%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 N + + +++ NI NA Y R +T + T S + + + Sbjct: 1 MNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGG 60 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 I S N + L D A Sbjct: 61 IRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAA 120 Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192 + + + +A + ++ + K + D Sbjct: 121 GGLTV-----AGLNVVNVNAAALPAEGSTAGNFTVNLPSTDQAPAAGGYNHKTSLISYND 175 Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 + + + + + ++ V + E +NF+ V+ + + Sbjct: 176 KGEKI------TLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDIVSGGNVAV 229 Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + + + + ++ N + + ++ +A Sbjct: 230 NLGAYGGQTLNLNLGGSTQRAGDY----TISQAAINGQAPSSIKGVDVGNDGAVVAVYEN 285 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + + ++ + + P S L + + Sbjct: 286 GTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNA 345 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVT 399 D+ D + + + + Sbjct: 346 DIAQELTDMIEAQRSYTANSKVFQTGS 372 >gi|114707045|ref|ZP_01439944.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] gi|114537595|gb|EAU40720.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] Length = 390 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 34/398 (8%), Positives = 90/398 (22%), Gaps = 9/398 (2%) Query: 84 EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 ++ + N+ ++ +S + D++ + + + + + TS Sbjct: 1 MSINGVFRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGS 60 Query: 144 EVQKIRADADKE-IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + + R D + + S+ QR + Sbjct: 61 VLSQTRYDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGET 120 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 ++ + + V G + T F Sbjct: 121 FLVNAAGYKLTGQNGPVQVPVGEIVAPQATTTSELSMQLPLNGTGTHTGSFTAFNSRGEA 180 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 ++ + A P + + PI Sbjct: 181 VNVSMTATRTGADQWDLTFDAPSASAPVTVSVTFDAATGLPNPPITTAGNLQIV------ 234 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + ++ ++ + Sbjct: 235 PPANGGGGAPSTVALNLGQLTSYDAAFTFQAEANGNPATGFSDFTISDDGRVFGILTTGR 294 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 +A + L + N + S ++ F + V Sbjct: 295 QIELDRIQLARFQSPDQLDVISGNV--FRPSQLSGDPQFGFSGELGFGDLISGALEESNV 352 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L EL+ +I ++SY ++K +ML L+ + Sbjct: 353 DLASELTDMIVTQRSYAANSKTFQTGSEMLDLLVNLKR 390 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 55/215 (25%), Gaps = 1/215 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ VF + + N S + +++ NI N+ Y R D + N + Sbjct: 1 MSINGVFRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGS 60 Query: 61 NMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + + + + N P + + Sbjct: 61 VLSQTRYDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGET 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + ++ ++L ++ T N + Sbjct: 121 FLVNAAGYKLTGQNGPVQVPVGEIVAPQATTTSELSMQLPLNGTGTHTGSFTAFNSRGEA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 S DQ D+ S ++ V + Sbjct: 181 VNVSMTATRTGADQWDLTFDAPSASAPVTVSVTFD 215 >gi|330889084|gb|EGH21745.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 419 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G L + LK+ S I + Sbjct: 15 ATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDG---------R 65 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 66 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVGGAWVSNGA 125 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T S + + D + + ++ +F++ Sbjct: 126 ANGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 182 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ T+ + S P + A + A Sbjct: 183 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 239 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + +GI+ Q+ + S Sbjct: 240 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFNNLLQHNAASSRSSTHVD 298 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ L + + NKN +A L AR+ W E S Sbjct: 299 GHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 356 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D + + V L +EL LI+ + +Y ++K I ++QTL+ Sbjct: 357 GVADYDVPGVGTLGSLIGDGLEGANVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 416 Query: 477 EG 478 + Sbjct: 417 QS 418 >gi|46578928|ref|YP_009736.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120603471|ref|YP_967871.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|46448340|gb|AAS94995.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120563700|gb|ABM29444.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|311232786|gb|ADP85640.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1] Length = 260 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 4/184 (2%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + F + G + +N L+ + Sbjct: 81 FSQGDFQNSGNPLDIAIEGDGFFQVLVNGEPRYTRAGAFKLNQDGTVVTANGYVLQPEFT 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 V + V AG+ ++ + P+ L RN ++ S Sbjct: 141 VPAETKNVVVTEAGHIAALD--ANGQELAAADIPLYTFINPAGLDAIGRNL--YVPSEAS 196 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + +++ + V + +E+ +I +++Y +++K I +D+MLQT + Sbjct: 197 GEAVEGVPGEDNVGTLAQGFLEMSNVEVVDEMVNMIVGQRAYEMNSKAISTSDQMLQTAV 256 Query: 477 EGVK 480 + Sbjct: 257 NLKR 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 27/152 (17%), Gaps = 28/152 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A I N+ N + + + Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISHNLANVNTSGFKKSRAEFEDLMYQNMRIAGSATEGDS 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + F + Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFSQGDFQNSGNPLDIAIEGDGFFQVL-------VNGEPRY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + + +L AE Sbjct: 114 TRAGAFKLNQDGTVVTANGYVLQPEFTVPAET 145 >gi|319790434|ref|YP_004152067.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] gi|317114936|gb|ADU97426.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] Length = 266 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 51/226 (22%), Gaps = 28/226 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + + I NI N + + R Sbjct: 1 MLRALWTSASGMEAQQTNLDVISNNIANVNTVGFKRSRANFEDLMYQDIRDPGVMSSEEN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + L + F ++ Sbjct: 61 RVPTGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDVAIQGPGFFKIE------LPGGGEAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160 + E Y L + +A E VV + +V +R +++ E Sbjct: 115 TRAGDFQLDNEGYIVTPEGYRLSPNIQISAPETVVNISISPNGKVYVVRNTGGQQVTEEA 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 ++ + AI + +A + D ++ Sbjct: 175 GTIKLYRFINPAGLKAIGGNLFVQTEASGEPIEGDPNTDGFGKLTQ 220 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 2/168 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + G + + + S + ++ Sbjct: 100 PGFFKIELPGGGEAYTRAGDFQLDNEGYIVTPEGYRLSPNIQISAPETVVNISISPNGKV 159 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + N + + L N +++ S + F Sbjct: 160 YVVRNTGGQQVTEEAGTIKLYRFINPAGLKAIGGNL--FVQTEASGEPIEGDPNTDGFGK 217 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ + VN+ EE+ LI +++Y I++K I+ D+ML+T+ Sbjct: 218 LTQGFLEASNVNIVEEMVNLIVAQRAYEINSKGIIAADEMLRTVASLK 265 >gi|298487856|ref|ZP_07005896.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157581|gb|EFH98661.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 586 Score = 80.1 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 45/423 (10%), Positives = 115/423 (27%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + S G + + LK+ S I Sbjct: 182 ATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175 + + + ++ +++ +++ ++KI + + + N Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + LD D L+ + S + ++ D + + Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + NS+ + + + + + + + + + Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + +GI+ Q+ + S Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A + L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFSNPQGLQ--ARSDTRWTESAD 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|83310488|ref|YP_420752.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] gi|82945329|dbj|BAE50193.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] Length = 545 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 59/540 (10%), Positives = 129/540 (23%), Gaps = 68/540 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 L F A SI +NI N + Y ++T+ Sbjct: 2 LFGAFTNASQAMQTMDWAMGSISQNIANVNTTGYKEKETLFKTVLSETHTSPPTSQNSPT 61 Query: 44 -TISPENVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----- 95 + + + R+ ++ M K + A ++ + F + S Sbjct: 62 KNTATTGLDIFGVRAVDRTMVSKSGTITASTTWSDMAINGRGFFIVTPPDSTGAPQTTLS 121 Query: 96 YNNSPTHYISKLRD---SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 +N+ + +Y + L DN V + + + + Sbjct: 122 SSNTLYTRAGDFTQRAVNGNNYFTTADGNFLMGWAADNLGVVSKTLSPVYANLGQKSDGM 181 Query: 153 DKEIELEISNL---------------------------------RRFLSELTVVNDAIKF 179 ++N+ R + V+ ++ Sbjct: 182 ATTSIQLVANVPSNATMTGATKTFTDTTSVTDGFGTAQDLTMTWNRVSGDTWTVDFSLPA 241 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 AS V++ I +T + IN Sbjct: 242 NPASGSVGTITGSPVTVVMDASGNITSPTTSASGTGFADLTFDWSAGPTMQNTASINLTS 301 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 DG S N V Sbjct: 302 NKPTVQGISETIAVYDGAFNSHNLTMNFEHASNGQWYMSFTPVAAEGAVSSLTADGTAYT 361 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL----RDGG 355 + + P I+ + Q+ + Sbjct: 362 NSIPITFDGAGNILTPATAELTVGWTAAGAGSNTITLDMRKLTQFSGETNNKLGVKVIDQ 421 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + ++ ++ HY + ++ PVA L + E Sbjct: 422 NGYASGTMDKVEISTDGSVMAHYDNGESRRIFQIPVASFVAPDQLDAISGTLFRATE-QA 480 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 D + Q I S + + V L+++ + +I +++Y++++ + D+M QT+ Sbjct: 481 GDMTVASISDQGSGASIVASATESSNVALEDQFTRMIVTQKAYSVNSNVFKTADEMTQTI 540 >gi|320325094|gb|EFW81163.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] Length = 586 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 111/422 (26%), Gaps = 18/422 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + S LK+ S I + Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + T S + + D + + ++ +F++ Sbjct: 293 VNGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ T+ + S P + A + A Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + +GI+ Q+ + S Sbjct: 407 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ L + + NKN +A L AR+ W E S Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQ--ARSDTCWTESADS 523 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D + + V L +EL LI+ + +Y ++K I ++QTL+ Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583 Query: 477 EG 478 + Sbjct: 584 QS 585 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 85/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V + Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAVNGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|289651646|ref|ZP_06482989.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] Length = 586 Score = 80.1 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 45/423 (10%), Positives = 114/423 (26%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + S G + + LK+ S I Sbjct: 182 ATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175 + + + ++ +++ +++ ++KI + + + N Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + LD D L+ + S + ++ D + + Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + NS+ + + + + + + + + + Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + +GI+ Q+ + S Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAD 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|253573527|ref|ZP_04850870.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon 786 str. D14] gi|251847055|gb|EES75060.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon 786 str. D14] Length = 274 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 41/122 (33%), Gaps = 3/122 (2%) Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 +A ++ + VA + L + N +D Sbjct: 153 AVTAFTIASDGTMMLKNPEGGTDPGEIIGVARVTNPEGLEKIGGNLYRVTLNAIADGELT 212 Query: 422 HMK---SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ + V+L E + +I ++ + ++++I +D++LQ ++ Sbjct: 213 YTNPNNAEEGTGALIVGQLEMSNVDLTGEFTEMIVAQRGFQANSRIITTSDEVLQEVVNL 272 Query: 479 VK 480 + Sbjct: 273 KR 274 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 26/140 (18%), Gaps = 25/140 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51 +L + + I NI N + + M + + VT Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKSGRVMFKDIMSQTVSGVTAPVDGES 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V+ S + ++ + + F ++ Sbjct: 61 GGVNAKQIGLGVSIGSIDTLHTGGSAMTTNNPLDMRIDGDGFF----LVKLTPDQEVPFL 116 Query: 102 HYISKLRDSLESYSKNLSED 121 Sbjct: 117 TRAGDFHLDAAGQLVTSDGL 136 >gi|206970889|ref|ZP_03231841.1| flagellar hook protein FlgE [Bacillus cereus AH1134] gi|228920464|ref|ZP_04083809.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229178162|ref|ZP_04305533.1| Flagellar hook protein flgE [Bacillus cereus 172560W] gi|206734525|gb|EDZ51695.1| flagellar hook protein FlgE [Bacillus cereus AH1134] gi|228605292|gb|EEK62742.1| Flagellar hook protein flgE [Bacillus cereus 172560W] gi|228839094|gb|EEM84390.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 407 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ + ++ Q+ ++ + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q + Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGTSGQNGAGKVR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + + + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ F+ + + + I DG + + K L Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGTSGQNGAGKVRGGAQEGANVD 370 >gi|260772274|ref|ZP_05881190.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14] gi|260611413|gb|EEX36616.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14] Length = 356 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 38/377 (10%), Positives = 94/377 (24%), Gaps = 27/377 (7%) Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + +E + + N ++ D + + E Sbjct: 6 AGTGFFAVAKDRLIPQQNELTRNGAFHLDKNNYMVTSNDQYLLGYEVNPDNGEVLSYEPK 65 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + +A+ D D + ++ ++ Y Sbjct: 66 PINIPAQFGKPKQTGNIELSANLPANGDLKDPALFDITDPDTYNRTTSSTIYDSMGQPYK 125 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 L + + T E G VS N L D Sbjct: 126 LTTYYLKDQNENNKWNTYYTVTDKTGEKPLNIAGGDAVSPNGHVGHT------LRFNNDG 179 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + N ++ + D + Q ++ + Sbjct: 180 TLASINNGNPIVSAAFGEGDNPIDLNGAD-------------------GSQTLAFNLNGA 220 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 Q+ + + + + Y ++ Y + N + + L Sbjct: 221 TQFAAPFELTKFDQDGATTGFLTKIDFDEYGSVLATYSNGQNVTLGRVAMVRVANEQGLD 280 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + W +S S+ F IS +++ +EL LI ++++ + Sbjct: 281 K--KGGTQWDSTQQSGVKIWGESSKGSFGTISNGVLEQSNIDMTQELVDLISAQRNFQAN 338 Query: 462 NKLIMFTDKMLQTLLEG 478 ++ + + QT+L+ Sbjct: 339 SRALEVHTGLQQTILQI 355 >gi|57506151|ref|ZP_00372072.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57015546|gb|EAL52339.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 853 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 86/362 (23%), Gaps = 4/362 (1%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + + + S V Sbjct: 494 DARYGVDYNGSGRIDNAPPAYDAADINQAVKVVVTENGNFSISNANQISTIPVGAGHGQN 553 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TA A + + ++ + + G+ E+ ++ + Sbjct: 554 TAQTTQAKNMNFNITAYTDALGKVSTNDAFTKIFKAFDGVQTVGSQKKESEQLKLSAFSV 613 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 S N ++ V + + + + + Sbjct: 614 GLEIFDSLGNKHTLEVQFVKQTTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARF 673 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ + N + + + KL G S S + Sbjct: 674 NNDGSLASYNPKTLNFSPNNGAAPNQQIKLSFGTSGANDGLVSSSSASTLTNQATDGYTS 733 Query: 361 FLWNVKNLAGYPDL--INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + +A + N L E N S + Sbjct: 734 GNLKPDAIRVDDKGHILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTGN--SGN 791 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + S V+L L+ LI V++ Y ++K I +D+ML TLL+ Sbjct: 792 IVVGEAGTGGRGEMKTSALEMSNVDLSRSLTQLIVVQRGYQANSKTISTSDQMLNTLLQL 851 Query: 479 VK 480 + Sbjct: 852 KQ 853 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/426 (7%), Positives = 87/426 (20%), Gaps = 38/426 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTAGFKYSRADFGTMFSQTVKIATVPTENLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 ++ + + + + F + + D Sbjct: 61 GQNPLQIGLGTSINSTTRIHSQ---GSVQTTNKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ +++ + + E Sbjct: 113 YLTRDGDFKLDAAGNFVNNAGFVVQGWNINWSDQSIDTSRSPKNLFIDPGLHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVND-------AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 ++ S L + N K + + + GI + Sbjct: 173 VAVKANLNSGLNIGNAARPLYALDSIHGFNQKTGETKNENDTGITQFYTTSKNGIEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ +G L + I ++ T + + I ++ Q + V Sbjct: 233 GVDAGALFNGNGKGLNLREGQGIWVSYADATFTTDRAQNVNIFDPNSTAQQQNNVQFWGH 292 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + Q + + + IA +D Sbjct: 293 ADVPATLSITLNGVQIRNTNIKSLDEAIAYINTFTNPADGRDGTGVIATKKEDGSGITFT 352 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + N + D + + N + + N + VA Sbjct: 353 NQNSNGTTDNMKNINLTVNLDNSAGEATTIDRDPNAGKFSAQGGQLPTAQNDSSWITNVA 412 Query: 393 GINTNV 398 Sbjct: 413 QGGNPQ 418 >gi|296330843|ref|ZP_06873318.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674361|ref|YP_003866033.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151848|gb|EFG92722.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412605|gb|ADM37724.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 264 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 68/243 (27%), Gaps = 3/243 (1%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 N TV + + + +V + G + I + + + Sbjct: 25 NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + S + + I G + + +GG++ Sbjct: 83 SATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + ++ + + L + N N Sbjct: 143 QIPTDAQSFSIGSDGKVSIVDAGGQTQDGGQIGIVTFANSDGLDKVGSNLYRE-SLNSGT 201 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + V+L +E + +I ++ + ++K+I +D++LQ L+ Sbjct: 202 ASAANQPGDGGTGSLKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261 Query: 478 GVK 480 + Sbjct: 262 LKR 264 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 9/149 (6%), Positives = 21/149 (14%), Gaps = 13/149 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + N + I NI N + + + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 63 FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 +SA + D + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + + Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIQIPTDAQ 149 >gi|229069305|ref|ZP_04202595.1| Flagellar hook protein flgE [Bacillus cereus F65185] gi|229078936|ref|ZP_04211488.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2] gi|228704350|gb|EEL56784.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2] gi|228713792|gb|EEL65677.1| Flagellar hook protein flgE [Bacillus cereus F65185] Length = 407 Score = 79.7 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ + ++ Q+ ++ + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCLIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q + Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGTSGQNGAGKVR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + + + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ F+ + + + I DG + + K L Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCLIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGTSGQNGAGKVRGGAQEGANVD 370 >gi|328543139|ref|YP_004303248.1| hypothetical protein SL003B_1520 [polymorphum gilvum SL003B-26A1] gi|326412884|gb|ADZ69947.1| Conserved domain protein [Polymorphum gilvum SL003B-26A1] Length = 361 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 37/392 (9%), Positives = 100/392 (25%), Gaps = 38/392 (9%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + + + Y N + L +D + N + I Sbjct: 8 IDGQTTFATTEYYTRAGDFELNEDGYMVNSAGYYLMGFPLD-----ARTGNAVGDNPEVI 62 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + S ++ + + + D I+ I+ Sbjct: 63 QIGSQPLPAQATSEIKYQANLPSYPQTNNADTSVPGSQYLDTSGA-------ITTTSDIA 115 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 ++ + T+++ +N E + T + N + G Sbjct: 116 VADIDDFLNSSISGQSITVYDQNGTPLNVEVRWAQTAANTWNAYYSSGGDA---VTGWYL 172 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 G++ + + + + + + + Sbjct: 173 IGEVTFDAAGVMDTLTPA----------------GTNTVGAGGASFVIDDLTVAGVNAGD 216 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 ++ + S + ++ G +I Y + ++ Sbjct: 217 IEFSFKKGSLTQYADPKGLASSVSLNQDGYAAGQVVGLSIDGAGRIIASYSNQQTRSLFE 276 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 P+A + L + + + I + + ++ E Sbjct: 277 IPLATFQADQNLRRV-------DGSAFAATPSSGKAAYGNGGTIVANALESSNADIAAEF 329 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S LI +Q+Y+ ++K++ D+ML L V+ Sbjct: 330 SKLIITQQAYSANSKVVTSADQMLNDALNMVR 361 >gi|330986469|gb|EGH84572.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 586 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 55/425 (12%), Positives = 116/425 (27%), Gaps = 24/425 (5%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G L + LK+ S I + Sbjct: 182 ATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292 Query: 177 IKFKTAS---KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 T S + LD D L+ + S + ++ D + + Sbjct: 293 ANGGTVSLPLNNGPISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQ 352 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + NS+ + + + + + + + + + Sbjct: 353 YFVKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQ 412 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + + +GI+ Q+ + S Sbjct: 413 LTGWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSST 462 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ L + + NKN +A L AR+ W E Sbjct: 463 HVDGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTES 520 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S D + + V L +EL LI+ + +Y ++K I ++Q Sbjct: 521 ADSGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQ 580 Query: 474 TLLEG 478 TL++ Sbjct: 581 TLIQS 585 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANAQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + PI+ + D + + + + Sbjct: 297 TVSLPLNNGPISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|317050615|ref|YP_004111731.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] gi|316945699|gb|ADU65175.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] Length = 262 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 2/172 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + D + + T N + + FL + G + Sbjct: 93 LDMTIEKDGYFQIQMPDGTTGYTRNGAFTKNNNGEIVTVEGFLLEPGIQIPDDAVEIYVG 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + + A L N + E + S + + + + Sbjct: 153 RDGTVSVQIGNQNQMQELGQITTAKFINPAGLESVGGNI--FKETSASGAPQVGIPGEDS 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I++ + V L EE+ +I +++Y I++K I D+MLQT + + Sbjct: 211 FGAIAQGFLEQSNVQLVEEMVNMISAQRAYEINSKAITTGDEMLQTATQLKR 262 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 11/196 (5%), Positives = 39/196 (19%), Gaps = 30/196 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54 ++ A +I N+ N + + + + + Sbjct: 1 MIRALWTASTGMMAQQTHIDNISNNLANVNTGGFKKSRVEFQDLMYQTIKPAGASTAAGI 60 Query: 55 QRSENKNM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R + + + + + + ++ + Sbjct: 61 TRPVGEQLGLGVKVAGITKMHTQGSIIQTGNQLDMTIEKDGYFQIQ------MPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIEL 158 + + +L + + V V T + ++ + Sbjct: 115 TRNGAFTKNNNGEIVTVEGFLLEPGIQIPDDAVEIYVGRDGTVSVQIGNQNQMQELGQIT 174 Query: 159 EISNLRRFLSELTVVN 174 + E N Sbjct: 175 TAKFINPAGLESVGGN 190 >gi|320529447|ref|ZP_08030535.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399] gi|320138413|gb|EFW30307.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399] Length = 681 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 87/286 (30%), Gaps = 7/286 (2%) Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 D + IS + + + + T GT L V + + +VT+ + Sbjct: 403 DGTVDSISRTSAYENNGKTVSSVTLNTKAGTALDGLVGKKYSQGDTFYPSVTTMVSVYDS 462 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 G S + + V + + +G ++ Sbjct: 463 LGAKHSIPVVYTKSANNKWTVSLGSGGDSYTIKEADGTTTTVSLTKTDLEFDTSGAYKSG 522 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 G + I S + + + + + Sbjct: 523 AGTLSLTYSNGAAPQQVTMNMSAITQYSG----TSTIAATSDGNAAGTLSKVEIDSSGVI 578 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + + +A N L + N + E N S + + + + + ++ Sbjct: 579 TGVYTNGVRRTEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTISGAADIG-SELTT 635 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 S V++ ++ S +I ++ + ++K+I +D+ML+TL+ + Sbjct: 636 SALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 681 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 32/421 (7%), Positives = 74/421 (17%), Gaps = 25/421 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ + + I NI N + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +L+ + S + + + + Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGEQKYYTRNGAFE 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV---QKIRADADKEIELEISNLRR 165 S + + + V + + K A NL Sbjct: 121 FDAAGNLTIPSTGLYVQGYMATDGRVTPAGENTTKINIPAGKSMEAATTATASYTKNLNA 180 Query: 166 FLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI-------STIVRNNNDM 217 + V N +++ + A+ +++ +S + N+ Sbjct: 181 STTGYEVANTLVRYADGTSETVANYVPEEKGKYSLTLSTGEKVLLDSSAAHPFKANDPVA 240 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 T + T+ S+P+ ++GV + Sbjct: 241 GKALYKSKISNITASATGTVDLKMKVDSTNSSSPVSVNGVTTGIARTGLTTGTYTYGGNY 300 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + + D V Sbjct: 301 TISGKITAATTVTVSGKTYVDLTLDANDNNLTPGTAVTVRVPQPTTFTYKTGDTYTGQLK 360 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I DG V + D + N Sbjct: 361 ITEVKGNAGATLTTADGNKAKLTAAVTVTSATQEFTRTGTVDDGTVDSISRTSAYENNGK 420 Query: 398 V 398 Sbjct: 421 T 421 >gi|304404253|ref|ZP_07385915.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304347231|gb|EFM13063.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 272 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 4/203 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 V + L + + I G+ + L + + + Sbjct: 71 GVAIAAIDTLHTAGSAMTTNVPTDVRIDGDGFFAVKTSPEQEVPYLTRAGNFYLDASRQL 130 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVT 399 G + ++A +I+ D + F V + Sbjct: 131 VTA-DGAFVLAEGGEPIVLDEGVTSFSIAQDGSIISINADGTAEPTDFKIGVVKVVNPSG 189 Query: 400 LLEYARNS--IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L + N + ++ I V+L E + +I ++ Sbjct: 190 LEKVGSNMYRVTPNANLEDIEVGSANNAETGTGAIIAGQLEMSNVDLTSEFTEMIIAQRG 249 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + ++++I +D++LQ ++ + Sbjct: 250 FQANSRIITTSDEVLQEVVNLKR 272 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 4/54 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTV 52 +L + + I NI N + + M + + VT Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQNVAGVTA 54 >gi|227112521|ref|ZP_03826177.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 400 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/397 (10%), Positives = 110/397 (27%), Gaps = 8/397 (2%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 + +S + +N+ + + +S K+ + V+ + Sbjct: 5 QAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDFGNG 64 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + +++++ IS + + T + + + ++ + + L Sbjct: 65 TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVAGTP 124 Query: 208 STIVRNNNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 + + + + DG L I +S V + + +++ + Sbjct: 125 PVVQTGADPVPLTVPDGDMLASQTTTASIVANLKSSDAVPATAWATNPGAEGTYNSKTAL 184 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-----NSENVPGLFIAD 321 + V N A+ S + N Sbjct: 185 TTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSVSPATYQNAGTLNFAANGALTGHTPFNI 244 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + + + + Q + S+ + + + Y + Sbjct: 245 NLTGTNGAANGVFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDGTIEGSYSNG 304 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + +A L N W E S + + + + + Sbjct: 305 QKQPLGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKSTESSN 362 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 363 VDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 399 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/369 (10%), Positives = 84/369 (22%), Gaps = 9/369 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + S + F L++ + + N + + + Sbjct: 62 GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVA 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 V+ + V + A L+ S+ + T + Sbjct: 122 GTPPVVQTGADPVPLTVPDGDMLASQTTTASIVANLKSSDAVPATAWATNPGAEGTY--- 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ L D + + N + +NF + Sbjct: 179 ---NSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSVSPATYQNAGTLNFAANGA 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + N ++ + G ++ + + I Sbjct: 236 LTGHTPFNINLTGTNGAANGVFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDG 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N + P I L L GS+ K Sbjct: 296 TIEGSYSNGQKQPLGQILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIG 355 Query: 363 WNVKNLAGY 371 + ++ Sbjct: 356 KSTESSNVD 364 >gi|218235227|ref|YP_002366439.1| flagellar hook protein FlgE [Bacillus cereus B4264] gi|228907387|ref|ZP_04071245.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200] gi|228938867|ref|ZP_04101467.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964737|ref|ZP_04125844.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto str. T04001] gi|228971748|ref|ZP_04132369.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978357|ref|ZP_04138734.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407] gi|218163184|gb|ACK63176.1| flagellar hook protein [Bacillus cereus B4264] gi|228781374|gb|EEM29575.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407] gi|228787838|gb|EEM35796.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794987|gb|EEM42486.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto str. T04001] gi|228820716|gb|EEM66741.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852248|gb|EEM97044.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200] gi|326939367|gb|AEA15263.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar chinensis CT-43] Length = 407 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ + ++ Q+ ++ + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q + Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + + + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ F+ + + + I DG + + K L Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370 >gi|331017025|gb|EGH97081.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 586 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 50/423 (11%), Positives = 109/423 (25%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + + LK+ S + + Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ ++ + N A Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S D + + + + + +F++ Sbjct: 293 ASGGGVSLPLIDGSASVLDPADAVMDRPVPV---FDSLDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + + IDG + I + + Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSAGLVSNNGG 409 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + + + GI Q+ + S Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSANGIELDFTNLLQHNAASSRSSTYV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61 FN A + N A+++ NI N+ + + + + + R+ + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A + + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANDKGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 A + + + + V T D Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223 >gi|254695093|ref|ZP_05156921.1| flagellar hook protein FlgE [Brucella abortus bv. 3 str. Tulya] gi|261215444|ref|ZP_05929725.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] gi|260917051|gb|EEX83912.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] Length = 396 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNMKR 396 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|237796094|ref|YP_002863646.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] gi|229263494|gb|ACQ54527.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] Length = 332 Score = 79.7 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/316 (11%), Positives = 85/316 (26%), Gaps = 14/316 (4%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + F Q +S+ + +T N G + Sbjct: 20 DVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQIGLGVQVAGMYTK 79 Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 T + + F+ G S+ + G + V ++ Sbjct: 80 FTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGDNAGAITGGSMEVSFTRDGS 139 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + S+ + G + + + G + K + I + P Sbjct: 140 FTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNADEDPKAITDKLVPLAIPDE 199 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + S+K + ++ D + +A L + +N Sbjct: 200 IEK---GSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYKN 256 Query: 411 LEKNRSDSHDLHMK------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + V+L EE + +I +++ K+ Sbjct: 257 SANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGKM 316 Query: 465 IMFTDKMLQTLLEGVK 480 I D++LQ L+ + Sbjct: 317 ITTGDEILQELVNLKR 332 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 29/176 (16%), Gaps = 26/176 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + +D Sbjct: 61 GTNPRQIGLGVQVAG---MYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGD 117 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + S A E I DA K Sbjct: 118 TGDNAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKM 173 >gi|313896037|ref|ZP_07829591.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon 137 str. F0430] gi|312975462|gb|EFR40923.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon 137 str. F0430] Length = 676 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 48/441 (10%), Positives = 121/441 (27%), Gaps = 27/441 (6%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + L++ + + + + + ++ + + + R L + + + Sbjct: 239 NGALYSSNISNITAKTGGTVDLQLDVDTTNPSSPLKIGTATTVNRTGLTTGTYAFGDMYN 298 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 I A V T + + +E+ + N F ++ + Sbjct: 299 ISGSITAATTVAGTPPTVKLTLDTDNNINPGSTVEVVVPNPTSFTYKVGDKYTGQLKVSK 358 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND--------------MVVYTSDGTTLF 228 + + D +++ + +++ + YT G T+ Sbjct: 359 VTGNTGATVTTADGNKAELTSALAVTSATQTYAHTGSAADGLITAITRESTYTYGGKTVS 418 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 ++ S + S + S + Sbjct: 419 SVTLNTKTGTSVDGLVGKSYAAGDTFYPSFTSLITVYDSLGKSHSVPVVFTKSSNNTWTL 478 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + + F A G + Q N Sbjct: 479 SLGTGGDTYNITEEDGTTTTVALSKTDLKFDATGAYVSGSASLNMTYTNGAAAQQLTMNL 538 Query: 349 SFLRDGGSVSKKFLWNVKNLAGY---------PDLINHYCDSFNKNFIFDPVAGINTNVT 399 + L S N AG + Y + + +A N Sbjct: 539 AALTQYSGTSTAAGTTDGNAAGTLSKVEIDSAGVITGTYTNGVRQKEAQIAMAQFNNPSG 598 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + N + E N S + + + + + ++ S V++ ++ S +I ++ + Sbjct: 599 LTKMGGNL--YQESNNSGTRTISGAADIG-SELTTSALEMSNVDIADQFSDMIITQRGFQ 655 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K+I +D+ML+TL+ + Sbjct: 656 SNSKIITVSDEMLETLINMKR 676 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/435 (7%), Positives = 90/435 (20%), Gaps = 26/435 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ + + I NI N + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +L+ + S + + + + N Sbjct: 61 GVNPKQIGLGMAVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGNEKYYTRNGAFE 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165 + S + + + N + + K NL Sbjct: 121 FDAQGNLTIPSTGLYVQGYMANNGVISNGGANTTNIQVPAGKSMKATTTTTASFTKNLNA 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 V N +++ + + E + + + Sbjct: 181 TTPGYEVANTLVRYADGTTGTVSSYTPT---------ESGSYVLTTDKGKKIRIANTAPA 231 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + P + S + + V ++N S + G + + + Sbjct: 232 QAIGSAPNGALYSSNISNITAKTGGTVDLQLDVDTTNPSSPLKIGTATTVNRTGLTTGTY 291 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++ + + + + + ++ + S T V +Y Sbjct: 292 AFGDMYNISGSITAATTVAGTPPTVKLTLDTDNNINPGSTVEVVVPNPTSFTYKVGDKYT 351 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + G+ N A + + G+ T +T Sbjct: 352 GQLKVSKVTGNTGATVTTADGNKAELTSALAVTSATQTYAHTGSAADGLITAITRESTYT 411 Query: 406 NSIGWLEKNRSDSHD 420 + ++ Sbjct: 412 YGGKTVSSVTLNTKT 426 >gi|218509412|ref|ZP_03507290.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5] Length = 196 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 3/182 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + + + + D Q I+ Q ++ S + Sbjct: 18 TAGGAVGTGSLTFDANGKMTSSGAVTINDGVTGQSIAMDFSGLTQLGADFSGTGTPNGQA 77 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + +V + G + Y D K P+A + + L + N +S Sbjct: 78 ATPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGV 134 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I V+L EL+ +I+ ++SY ++K+ ++ L+ Sbjct: 135 TVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNL 194 Query: 479 VK 480 + Sbjct: 195 KR 196 >gi|146341767|ref|YP_001206815.1| flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] gi|146194573|emb|CAL78598.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] Length = 415 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 50/480 (10%), Positives = 116/480 (24%), Gaps = 65/480 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A + N S A I NI NAD Y + + S Sbjct: 1 MSLSGALSSAISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSSSKAYSSGG 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + A++ S Sbjct: 61 VSVSGRSNITQQGLLAATTNATDVAIQGSGFFVATS------------------STAAGG 102 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + + ++ R DA S L +N + Sbjct: 103 ETFYTRNGAFTTDNAGYIENNGYYLEGWRTDASG---------NVVGSGLEPINTKVALT 153 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S T+++++ + + Sbjct: 154 NGGATTKTSLAANL-----------------PADAADNATFSSSMTVYDSLGQAHTMDVT 196 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + TS ++ + + +++ V G + GS Sbjct: 197 WTKVATSTASNEWTAQIAPATSSEGTVTSGT-------------------YTIDFNSDGS 237 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 ++ + + G + T + + S Sbjct: 238 LNKVSSTSLGIQWKNGAADSTIALSFGTTGGGTDGLTQLSSGSTTPSVSNFSANSDGISF 297 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + ++ + Y + VA L+ ++ S + Sbjct: 298 GTLSSISVGKSGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSSGMYT--STATSGNAT 355 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L + I S + + + S +I +Q+Y+ +++++ +KM TL+ ++ Sbjct: 356 LQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVVSAVNKMYDTLISSMR 415 >gi|320329353|gb|EFW85346.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|330880525|gb|EGH14674.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 586 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + S LK+ S I + Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T S + + D + + ++ +F++ Sbjct: 293 ANGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ T+ + S P + A + A Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + +GI+ Q+ + S Sbjct: 407 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ L + + NKN +A L AR+ W E S Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 523 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D + + V L +EL LI+ + +Y ++K I ++QTL+ Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583 Query: 477 EG 478 + Sbjct: 584 QS 585 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|254720773|ref|ZP_05182584.1| flagellar hook protein FlgE [Brucella sp. 83/13] gi|265985831|ref|ZP_06098566.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306840136|ref|ZP_07472921.1| flagellar hook protein FlgE [Brucella sp. NF 2653] gi|264664423|gb|EEZ34684.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306404781|gb|EFM61075.1| flagellar hook protein FlgE [Brucella sp. NF 2653] Length = 396 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G+ + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGAEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 IDVLVNLKR 396 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGAEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +LI+ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELIDVLVN 393 >gi|256830176|ref|YP_003158904.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] gi|256579352|gb|ACU90488.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] Length = 260 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 2/110 (1%) Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 L PV L RN +++ + S + + Sbjct: 153 DGRLTCVDKAGAEIAGTDIPVYTFVNPAGLKAMGRNL--YVQTDGSGEAVESVPGENNAG 210 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ + V + EE+ +I +++Y ++K I D MLQT + + Sbjct: 211 TLAQGFLEMSNVEIVEEMVNMIVGQRAYEANSKSITTADMMLQTANQLKR 260 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 8/143 (5%), Positives = 24/143 (16%), Gaps = 28/143 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + N+ N + + + Sbjct: 1 MIRALWTSASGMIAQQLNLDVTANNLANVNTTGFKKNRAEFEDLMYQNMKIAGSSNQEGD 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + F + D Sbjct: 61 RLPVGMQVGMGVRPVSVHKIFTQGDFQNTGNQLDLVIEGDGFFRV-------DRGGEESY 113 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + + + L Sbjct: 114 TRSGAFKLDSDGRIVTDNGHPLQ 136 >gi|323178487|gb|EFZ64065.1| hypothetical protein ECOK1180_3000 [Escherichia coli 1180] Length = 226 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 22/241 (9%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 + ++ +++ + G + AL ++ V+ + ++ MA Sbjct: 6 SSTIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMASQF 65 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + PG + + + S+P Sbjct: 66 ADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP--------- 116 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + +G D + + + + +VT+ + + I + Sbjct: 117 ---------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIYSQQ 163 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + V++ S+ GV++ EE LI +Q Y + K+I ++ ++LE Sbjct: 164 NQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDSVLE 223 Query: 478 G 478 Sbjct: 224 M 224 >gi|327254554|gb|EGE66170.1| hypothetical protein ECSTEC7V_0308 [Escherichia coli STEC_7v] Length = 400 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/405 (8%), Positives = 107/405 (26%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANLDASDDAIDRTTVPFDPTNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S+ S + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAADGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A + L + W++ S + + + ++ Sbjct: 298 YATYSNGERMLQGQVVLATFPNDDGLQAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GALESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 90/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N + Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D++ + T + +NL + +S + Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANLDASDDAIDRTTVPFDPTNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV + + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAADGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNDDGLQAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 ALESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|254785374|ref|YP_003072803.1| flagellar basal body rod protein FlgG [Teredinibacter turnerae T7901] gi|237683455|gb|ACR10719.1| flagellar basal-body rod protein FlgG [Teredinibacter turnerae T7901] Length = 261 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 2/169 (1%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + F D + + + L + Sbjct: 89 TNQPLDVAIDGRGFFQILQPDGTIGYTRAGQFHLSNQGEIVDPTGLLLQPAITIPDNAES 148 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 V + L N +LE S + + Sbjct: 149 VTIGTDGTVSARIAGVAAPAILGNIQTVDFVNPAGLQAIGGNL--FLETAASGNPIQGIP 206 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 Q + + V++ EE+ +I +++Y +++K++ D+MLQ Sbjct: 207 GQNGLGQVEQGMLENSNVDIVEEMVNMITTQRAYEMNSKIVSTADQMLQ 255 Score = 63.5 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 59/246 (23%), Gaps = 37/246 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + ++ N+ NA + R + Sbjct: 1 MHAALYVSKTGLAAQDTKLTTVANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQNTEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + L + + + F + + Sbjct: 61 QLPSGLQLGTGVRVVGTQKQFDY---GSLQVTNQPLDVAIDGRGFFQILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + S + + + +L + + T + + + A A Sbjct: 112 IGYTRAGQFHLSNQGEIVDPTGLLLQPAITIPDNAESVTIGTDGTVSARIAGVAAPAILG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + + + N ++ AS + Q + + + + + Sbjct: 172 NIQTVDFVNPAGLQAIGGNLFLETA-ASGNPIQGIPGQNGLGQVEQGMLENSNVDIVEEM 230 Query: 216 DMVVYT 221 ++ T Sbjct: 231 VNMITT 236 >gi|218896686|ref|YP_002445097.1| flagellar hook protein [Bacillus cereus G9842] gi|228900335|ref|ZP_04064565.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222] gi|218545583|gb|ACK97977.1| flagellar hook protein [Bacillus cereus G9842] gi|228859370|gb|EEN03800.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222] Length = 407 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 99/407 (24%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ + ++ Q+ ++ + + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q + Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + + + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + ++ F+ + + + I DG + + K L Sbjct: 225 KETEFKDVQGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370 >gi|119714998|ref|YP_921963.1| hypothetical protein Noca_0751 [Nocardioides sp. JS614] gi|119535659|gb|ABL80276.1| protein of unknown function DUF1078 domain protein [Nocardioides sp. JS614] Length = 282 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 76/272 (27%), Gaps = 11/272 (4%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T N + +T+F+ + + +NPI + V + + + Sbjct: 22 TGNNIANANTIGFKSSSTVFQDTLSQMLTSGSAAGGGLGGTNPIQVGLGVQVAATNTNLN 81 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +G + + D L + + + Sbjct: 82 QGANQTTGRPTD---------LMINGDGMFVVMRGNVATYTRAGAFSWDNSGTLVSPGGG 132 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 ++ + L + + + L L + D Sbjct: 133 RVQGYTTFDAAGVHTGGLTDIVLPEDNGATPPLALSSYELGRDGKLTATFEDGSKLVVAQ 192 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N + L S S +L + + +S V+L E Sbjct: 193 VALANFNNPMGLARAGETSFTT--TANSGVAELGVSGEGSRGALSPGSVEMSNVDLAAEF 250 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI ++ + S+++I +D++L+ L+ + Sbjct: 251 TNLILAQRGFQASSRVITTSDQVLEDLVNIKR 282 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 29/145 (20%), Gaps = 13/145 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + NI NA+ + T+ + + + Sbjct: 1 MLRSLFAGISGLRVNQTMLDVTGNNIANANTIGFKSSSTVFQDTLSQMLTSGSAAGGGLG 60 Query: 63 FDK--------VLHAHSSAIGQQRLL-----QSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A ++ + Q + M N + Sbjct: 61 GTNPIQVGLGVQVAATNTNLNQGANQTTGRPTDLMINGDGMFVVMRGNVATYTRAGAFSW 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEV 134 + + +A V Sbjct: 121 DNSGTLVSPGGGRVQGYTTFDAAGV 145 >gi|330972414|gb|EGH72480.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 582 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/365 (10%), Positives = 96/365 (26%), Gaps = 16/365 (4%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174 + + ++ + +++ + + + K+ + + + + + + +N Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLN 290 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPR 233 + D LL ++ + G +F++ Sbjct: 291 --------GGAVSLPLSDAGTSLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGN 342 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ T+ + N S P + A + + Sbjct: 343 THELKQYFVKDGTNSWRMHVLIDDRNPQNSASTTP---LTANIVFDSHGTVASLTGSPGL 399 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + PG I + GI+ Q+ + S Sbjct: 400 SSSNGNQLKLTGWSPV-MAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSAA 458 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 ++ L + + K+ +A L R+ W Sbjct: 459 YVDGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWAAT 516 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + I V L +EL LI+ + +Y ++K I ++Q Sbjct: 517 ADSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQ 576 Query: 474 TLLEG 478 TL++ Sbjct: 577 TLIQS 581 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 25/438 (5%), Positives = 89/438 (20%), Gaps = 19/438 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ ++Q ++ ++ + L + F Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178 Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 A + ++ + + + + ++V + P Sbjct: 179 ADPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ E +++ N + V + + + L Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLNGGAVSLPL 298 Query: 293 MARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + + + E + +N Sbjct: 299 SDAGTSLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + + + L ++ Sbjct: 359 RMHVLIDDRNPQNSASTTPLTANIVFDSHGTVASLTGSPGLSSSNGNQLKLTGWSPVMAV 418 Query: 410 WLEKNRSDSHDLHMKSQV 427 +R Sbjct: 419 DPGTSRERWIANGAAGSA 436 >gi|83589631|ref|YP_429640.1| hypothetical protein Moth_0779 [Moorella thermoacetica ATCC 39073] gi|83572545|gb|ABC19097.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 275 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 22/267 (8%), Positives = 61/267 (22%), Gaps = 13/267 (4%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + + + V + G Sbjct: 9 VSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGTGMGGTNPQ 68 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR- 345 Q L + ++ + + + + D Sbjct: 69 QIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGAFHFDNEGF 128 Query: 346 -----------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 ++ + ++ + ++ + +A Sbjct: 129 LVTTDGLKVLGTDDNPIQIADMNDPTTMPQSYSIDKMGVVHYVDSTGAALQAGTISIAKF 188 Query: 395 NTNVTLLEYARNSI-GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + L + +N S + + I S V+L +E + +I Sbjct: 189 SNPSGLEKIGQNLYRATTSSGDPGSELTPGQGSLANTTIIPSALEMSNVDLAQEFTDMII 248 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ + + + I +D+MLQ L+ + Sbjct: 249 TERGFQANARTITTSDQMLQELVNLKR 275 Score = 68.5 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 9/146 (6%), Positives = 25/146 (17%), Gaps = 16/146 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57 ++ + + I NI N + + R + + Sbjct: 1 MMRSLYSGVSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGT 60 Query: 58 ENKNMFDKVL-----------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + + A + N+ Sbjct: 61 GMGGTNPQQIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGA 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAE 132 E + + T + + Sbjct: 121 FHFDNEGFLVTTDGLKVLGTDDNPIQ 146 >gi|294852968|ref|ZP_06793640.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] gi|294818623|gb|EFG35623.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] Length = 396 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTDSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 43/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGKTVIDNA------------EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L D A + + + Sbjct: 121 GYYLLDAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTDSELMDVLVN 393 >gi|229102353|ref|ZP_04233061.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28] gi|229115194|ref|ZP_04244604.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3] gi|228668334|gb|EEL23766.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3] gi|228681000|gb|EEL35169.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28] Length = 407 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 101/407 (24%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ + ++ Q+ ++ + + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G + I+ + + ++ + +A Sbjct: 243 AVGNPNPKEQRANIPFDGGSINLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q + Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 76/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + + + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + ++ F+ + + + I DG ++ + K L Sbjct: 225 KETEFKDVQGAGGNMTFDAVGNPNPKEQRANIPFDGGSINLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370 >gi|257484948|ref|ZP_05638989.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011043|gb|EGH91099.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 586 Score = 79.3 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + S LK+ S I + Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 T S + + D + + ++ +F++ Sbjct: 293 ANGGTVSLPLNNGSISILDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ T+ + S P + A + A Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + +GI+ Q+ + S Sbjct: 407 HSNGL-QLTGWTPAMPAERVTVPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ L + + NKN +A L AR+ W E S Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 523 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D + + V L +EL LI+ + +Y ++K I ++QTL+ Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583 Query: 477 EG 478 + Sbjct: 584 QS 585 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISILDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|90021853|ref|YP_527680.1| flagellar basal body rod protein FlgG [Saccharophagus degradans 2-40] gi|89951453|gb|ABD81468.1| Flagellar basal-body rod FlgG [Saccharophagus degradans 2-40] Length = 261 Score = 78.9 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 2/181 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + FI D + + Q + L Sbjct: 77 TQKQFTPGSLQVTGQSLDVAIDGRGFIPVLQPDGTVSYTRDGQFHLDGQGQVVNASGLLI 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 V + + + L N +LE Sbjct: 137 QPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLGNLQIVDFVNPAGLQAIGGNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + I + V++ EE+ +I +++Y +++K++ +D+ML Sbjct: 195 TASSGNPIQGTPGENGLGSIKQGMLENSNVDIVEEMVNMITTQRAYEMNSKVVSTSDQML 254 Query: 473 Q 473 Q Sbjct: 255 Q 255 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/210 (8%), Positives = 45/210 (21%), Gaps = 36/210 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + +I N+ NA + R + Sbjct: 1 MHAALYVSKTGLAAQDTRLTTIANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQTTEET 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L ++ + F + + Sbjct: 61 QLPSGLQLGTGVRVVGTQK---QFTPGSLQVTGQSLDVAIDGRGFIPVLQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT---SAREVQKIRADADKE 155 + + N S ++ + T + V+ A Sbjct: 112 VSYTRDGQFHLDGQGQVVNASGLLIQPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + N ++ ++ Sbjct: 172 NLQIVDFVNPAGLQAIGGNLFLETASSGNP 201 >gi|293408367|ref|ZP_06652206.1| conserved hypothetical protein [Escherichia coli B354] gi|291471545|gb|EFF14028.1| conserved hypothetical protein [Escherichia coli B354] Length = 400 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S+ S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + ++ Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D++ + T + +N + +S + Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|296123915|ref|YP_003631693.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] gi|296016255|gb|ADG69494.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] Length = 562 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 46/558 (8%), Positives = 107/558 (19%), Gaps = 82/558 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50 M L + N + N + + NI NA + P Sbjct: 1 MGLTSALNTSLNGLSLNEVTIDVLGNNIANAGTNGFKASTVRFQTQLARTLSIGSRPTAT 60 Query: 51 TVVTQRSENKNMFDKVLHA---HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + ++ E D + Sbjct: 61 DGGSNPRQVGLGATTSAISKDFTQGSLSNSTSASDLAIQGEGFFVMDGSSGRTYTRNGNF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT----SAREVQKIRADADKEIELEISNL 163 S +SY N + ID+ +V + E+ + + + + Sbjct: 121 LRSSDSYLVNDQGQFVQGYGIDDEFNIVTTQLSPLRIPLGELNVAQRTSQITMGGALFPA 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHD------FLDQRDVLLQKISEIIGISTIVRNNNDM 217 ++ +VN + + + A + + + + Sbjct: 181 GDLSTQGALVNSEVLTDSVTGLPATGTALLSNVENAGGTNYFNVGNTLTFAPRKGGRVVE 240 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + T + + N G + G + Sbjct: 241 EQTFTVTATSTLADYVTFMNNTLGIQSGAGIPNDATTGGQPGVTLTGGQIQVVGNTGTQN 300 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 ++ + S S A V + + L Sbjct: 301 DISITAGDIKSNGAVVPLSFTKSESSNGESAATEFIVYDSLGQTVNVRMTSVLESRGPGA 360 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKN------------------------LAGYPD 373 S + ++ + Sbjct: 361 TTFRYFLESAQDSRPGVAIGTGLITFDSDGKITGDTTQMFTLERSDTAAVSPMQIEMDLS 420 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYA----------------------------- 404 I+ + + + + + TL Y Sbjct: 421 QISGISSAQSGSALNLSNQNGSKPGTLQSYVIDEQGLINGIFDNGLIRSLGQVVLARFAN 480 Query: 405 ------RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 + E S + I+ ++ L LI +Y Sbjct: 481 SDGLLEAGGTAFREGVSSGVPQIVSPGSFGAGTIASGKIELSNTDIGRNLVDLIVASTNY 540 Query: 459 NISNKLIMFTDKMLQTLL 476 + ++I + LL Sbjct: 541 RGNARVISSVQDLTNELL 558 >gi|160901817|ref|YP_001567398.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] gi|160359461|gb|ABX31075.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] Length = 261 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 9/217 (4%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + L + ++ + + S I G+ + Sbjct: 54 TPTAQGSTLPTGLYVGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIA 113 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + + + P+ + SV + D + Sbjct: 114 YTRDGSFKLDANGRLTTSDGLMVIPNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLT 173 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +P L E S + + Q F + + Y V+ Sbjct: 174 TVRFLNPGGLKPIGNNLYS---------ETPASGNPTEGIPGQDGFGALQQGYLEKSNVD 224 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y+I++K I D+ML+T+ + Sbjct: 225 VVKEMVDMIVAQRAYDINSKTITTADEMLRTVSNVKR 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 15/208 (7%), Positives = 45/208 (21%), Gaps = 15/208 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L A N ++ I N+ N D Y ++ Sbjct: 1 MLVSLYNAATGMNAEQRKLDIISNNLANVDTTGYKKQRAEFQDLLYSSVKEAGTPTAQGS 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + I + + + S Sbjct: 61 TLPTGLYVGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + ++ ++ V N + + + + + Sbjct: 121 KLDANGRLTTSDGLMVIPNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLTTVRFLNP 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRD 195 L + + + +T + + + + +D Sbjct: 181 GGLKPIGNNLYSETPASGNPTEGIPGQD 208 >gi|2832235|gb|AAC01569.1| flagellar hook [Brucella abortus] Length = 396 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKDAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKDAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|227328338|ref|ZP_03832362.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 400 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/397 (10%), Positives = 112/397 (28%), Gaps = 8/397 (2%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 + +S + +N+ + + +S K+ + V+ + Sbjct: 5 QAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDFGNG 64 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + +++++ IS + + T + + + ++ + + L Sbjct: 65 TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVAGTP 124 Query: 208 STIVRNNNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 T+ + + + DG L I +S V + + +++ + Sbjct: 125 PTVQTGADPVPLTVPDGDMLASATTIASIKANLKSSDAVPTNAWATTPGAEGTYNSKTAL 184 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-----NSENVPGLFIAD 321 + V N A+ + + N Sbjct: 185 TTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSITPAVYQNAGALNFASNGALTGHTPFNI 244 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + + + + + Q + S+ + + + +Y + Sbjct: 245 NLVGTNGAATGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDGTIEGNYSNG 304 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + +A L N W E S + + + + + Sbjct: 305 QKQALGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKSTESSN 362 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L +EL +I +++Y + + I D +LQTL+ Sbjct: 363 VDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 399 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 37/369 (10%), Positives = 84/369 (22%), Gaps = 9/369 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS I NI N+ + V S ++ Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + S + F L++ + + N + + + Sbjct: 62 GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVA 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + V + A + L+ S+ + T + Sbjct: 122 GTPPTVQTGADPVPLTVPDGDMLASATTIASIKANLKSSDAVPTNAWATTPGAEGTY--- 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ L D + + N T +NF + Sbjct: 179 ---NSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSITPAVYQNAGALNFASNGA 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T + N + ++ + G ++ + + I Sbjct: 236 LTGHTPFNINLVGTNGAATGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDG 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + N + I L L GS+ K Sbjct: 296 TIEGNYSNGQKQALGQILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIG 355 Query: 363 WNVKNLAGY 371 + ++ Sbjct: 356 KSTESSNVD 364 >gi|325288803|ref|YP_004264984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964204|gb|ADY54983.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 299 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 68/276 (24%), Gaps = 3/276 (1%) Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 I+ + S ++ I + + S +Q Sbjct: 25 NIANVNTVGYKYSRTGFSTMLSQSMRGASAPDTADPSTYGGTDGIQIGLGSAIGSIDQIM 84 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + F D V + + + Sbjct: 85 TQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVYLSRNGNFKTDGAGNLVDASTGFIVQGYE 144 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD-SFNK 384 D I + S + D + D ++ Sbjct: 145 NDGSDPWDTLANINLAIGRSDPEGGTNTLSSFEINSQGIIMGTFTDSDSTDGTTDPAYTV 204 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 VA N L N + E S +++ + IS VNL Sbjct: 205 PLYQIAVATCNNPSGLTPVGNNY--YQESPNSGEVKINVAGENGNRSISTGCLEMSNVNL 262 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ + +I ++ + ++++I +D MLQ L++ + Sbjct: 263 SEQFTDMIVTQRGFQANSRVITVSDSMLQELVDLKR 298 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 4/162 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + N I NI N + Y T + + R + Sbjct: 1 MMRSLYSAISGLKNEQIAMDVIGNNIANVNTVGYKYSRTGFSTMLS----QSMRGASAPD 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L + ++ ++M+ + + + + Sbjct: 57 TADPSTYGGTDGIQIGLGSAIGSIDQIMTQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVY 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 L + + + S + + + + ++N+ Sbjct: 117 LSRNGNFKTDGAGNLVDASTGFIVQGYENDGSDPWDTLANIN 158 >gi|168182737|ref|ZP_02617401.1| flagellar hook protein FlgE [Clostridium botulinum Bf] gi|182674150|gb|EDT86111.1| flagellar hook protein FlgE [Clostridium botulinum Bf] Length = 332 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/316 (10%), Positives = 85/316 (26%), Gaps = 14/316 (4%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + + F Q +S+ + +T N G + Sbjct: 20 DVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQIGLGVQVAGMYTK 79 Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 T + + F+ G S+ + G + V ++ Sbjct: 80 FTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGDNAGAITGGSMEVSFTRDGS 139 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + S+ + G + + + G + K + + + P Sbjct: 140 FTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNADEDPKAVTDKLVPLAIPDE 199 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + S+K + ++ D + +A L + +N Sbjct: 200 IEK---GSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYKN 256 Query: 411 LEKNRSDSHDLHMK------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + + V+L EE + +I +++ K+ Sbjct: 257 SANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGKM 316 Query: 465 IMFTDKMLQTLLEGVK 480 I D++LQ L+ + Sbjct: 317 ITTGDEILQELVNLKR 332 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 29/176 (16%), Gaps = 26/176 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + +D Sbjct: 61 GTNPRQIGLGVQVAG---MYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGD 117 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + S A E I DA K Sbjct: 118 TGDNAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKM 173 >gi|237799207|ref|ZP_04587668.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806226|ref|ZP_04592930.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022062|gb|EGI02119.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027339|gb|EGI07394.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 582 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 99/362 (27%), Gaps = 9/362 (2%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E + + Q IR +D E L+ R ++ + + + + Sbjct: 229 NPLDPDSVTPLQVRVELKPDGSLSYSDNNQHIRKISDTEFALQDWVPARQVNGVWLASGS 288 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + T S + D +S + ++ G +F++ Sbjct: 289 LNGGTVSLPLEEAGVSVLDPADSVMSRSVP---DFDASDLNTYSRMFGNQIFDSQGNMHE 345 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++ T+ + S P V LD Sbjct: 346 LKQYFVKDGTNSWRMHVLIDDRNPQQPESKAPLTANIVFDTHGSVVSLTGSTGLDSSKGN 405 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 L+ + PG + G++ Q+ + S Sbjct: 406 LLQLTGW----SPAMVASPGTEREHWAPNGAAGSANGMTIDFTNLLQHNAASSRSSAYVD 461 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ L + + NK+ +A L R+ W S Sbjct: 462 GHSAGELKSLDVGRDGILRAGFTNGMNKDIGQVMLASFANPHGLQP--RSDTRWAATADS 519 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D + I V L +EL LI+ + +Y ++K I ++QTL+ Sbjct: 520 GVADYDVPGIGTLGSIISGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLI 579 Query: 477 EG 478 + Sbjct: 580 QS 581 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 30/441 (6%), Positives = 95/441 (21%), Gaps = 13/441 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYSSAQLGNGNNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 AAVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF-----LSELTVVND 175 L ++ E + + + A A + I+ L N Sbjct: 122 RLQGYAANDKGEIISGIRTDLQIDTSNVAARATTRVSENINLDSSLPSLSRLPVFDPANP 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A + A + + ++ + + + ++V + P + Sbjct: 182 ATYTRVAGRTIQDVGIVPVQAADHELKQYFVKTEDNQWTMHVLVDGRNPLDPDSVTPLQV 241 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E +++ N I + + + + + + L Sbjct: 242 RVELKPDGSLSYSDNNQHIRKISDTEFALQDWVPARQVNGVWLASGSLNGGTVSLPLEEA 301 Query: 296 VLIG---SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + S + + + + + E + +N + Sbjct: 302 GVSVLDPADSVMSRSVPDFDASDLNTYSRMFGNQIFDSQGNMHELKQYFVKDGTNSWRMH 361 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 K + + + + + + L ++ + Sbjct: 362 VLIDDRNPQQPESKAPLTANIVFDTHGSVVSLTGSTGLDSSKGNLLQLTGWSPAMVASPG 421 Query: 413 KNRSDSHDLHMKSQVVFNHIS 433 R I Sbjct: 422 TEREHWAPNGAAGSANGMTID 442 >gi|17988503|ref|NP_541136.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. 16M] gi|256042866|ref|ZP_05445812.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. Rev.1] gi|260564103|ref|ZP_05834588.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|265989301|ref|ZP_06101858.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] gi|38257707|sp|Q8YDL6|FLGE_BRUME RecName: Full=Flagellar hook protein flgE gi|17984295|gb|AAL53400.1| flagellar hook protein flge [Brucella melitensis bv. 1 str. 16M] gi|260151746|gb|EEW86839.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|262999970|gb|EEZ12660.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] Length = 396 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNIVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|66046706|ref|YP_236547.1| flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] gi|63257413|gb|AAY38509.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 582 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/364 (10%), Positives = 96/364 (26%), Gaps = 14/364 (3%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174 + + ++ + +++ + + + K+ + + + + + + +N Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLN 290 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 S A V+ + + + G +F++ Sbjct: 291 GGAVSLPLSDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 343 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ T+ + N S P + A + ++ Sbjct: 344 HELKQYFVKDGTNSWRMHVLIDDRNPQNSASTTP---LTANIVFDSHGTVASLTGSPGLS 400 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 PG I + GI+ Q+ + S Sbjct: 401 SSNGNQLKLTGWSPV-MAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSAAY 459 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ L + + K+ +A L R+ W Sbjct: 460 VDGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWTATA 517 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + I V L +EL LI+ + +Y ++K I ++QT Sbjct: 518 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 577 Query: 475 LLEG 478 L++ Sbjct: 578 LIQS 581 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 25/438 (5%), Positives = 89/438 (20%), Gaps = 19/438 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ ++Q ++ ++ + L + F Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178 Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 A + ++ + + + + ++V + P Sbjct: 179 ADPATFTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ E +++ N + V + + + L Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLNGGAVSLPL 298 Query: 293 MARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + + + E + +N Sbjct: 299 SDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + + + + L ++ Sbjct: 359 RMHVLIDDRNPQNSASTTPLTANIVFDSHGTVASLTGSPGLSSSNGNQLKLTGWSPVMAV 418 Query: 410 WLEKNRSDSHDLHMKSQV 427 +R Sbjct: 419 DPGTSRERWIANGAAGSA 436 >gi|62317957|ref|YP_223810.1| flagellar hook protein FlgE [Brucella abortus bv. 1 str. 9-941] gi|83269934|ref|YP_419225.1| flagellar hook protein FlgE [Brucella melitensis biovar Abortus 2308] gi|189023208|ref|YP_001932949.1| flagellar hook protein FlgE [Brucella abortus S19] gi|225686885|ref|YP_002734857.1| flagellar hook protein FlgE [Brucella melitensis ATCC 23457] gi|254691611|ref|ZP_05154865.1| flagellar hook protein FlgE [Brucella abortus bv. 6 str. 870] gi|254731634|ref|ZP_05190212.1| flagellar hook protein FlgE [Brucella abortus bv. 4 str. 292] gi|256112177|ref|ZP_05453098.1| flagellar hook protein FlgE [Brucella melitensis bv. 3 str. Ether] gi|256256798|ref|ZP_05462334.1| flagellar hook protein FlgE [Brucella abortus bv. 9 str. C68] gi|256261978|ref|ZP_05464510.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|260544142|ref|ZP_05819963.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260757242|ref|ZP_05869590.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260759393|ref|ZP_05871741.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260883046|ref|ZP_05894660.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|265993603|ref|ZP_06106160.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|297250151|ref|ZP_06933852.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|68845076|sp|O52070|FLGE_BRUAB RecName: Full=Flagellar hook protein flgE gi|12330680|gb|AAG52877.1| FlgE [Brucella abortus] gi|62198150|gb|AAX76449.1| FlgE, flagellar hook protein [Brucella abortus bv. 1 str. 9-941] gi|82940208|emb|CAJ13264.1| Flagellar basal body rod protein:Trypsin inhibitor Kunitz [Brucella melitensis biovar Abortus 2308] gi|189021782|gb|ACD74503.1| Trypsin inhibitor Kunitz [Brucella abortus S19] gi|225642990|gb|ACO02903.1| flagellar basal body FlaE domain protein [Brucella melitensis ATCC 23457] gi|260097413|gb|EEW81287.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260669711|gb|EEX56651.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260677350|gb|EEX64171.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260872574|gb|EEX79643.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|262764473|gb|EEZ10505.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|263091462|gb|EEZ15998.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|297174020|gb|EFH33384.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|326411303|gb|ADZ68367.1| flagellar hook protein FlgE [Brucella melitensis M28] gi|326554592|gb|ADZ89231.1| flagellar hook protein FlgE [Brucella melitensis M5-90] Length = 396 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|330961197|gb|EGH61457.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 582 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/364 (9%), Positives = 94/364 (25%), Gaps = 14/364 (3%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174 + + ++ + +++ +++ ++K+ + + + + N Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNSQHLRKVSDNEFALQGWVPAKEVNGAWMANGSAN 290 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + LD D ++ + + G ++++ Sbjct: 291 GGVVSLPLD-DAGVSLLDPADAVMHRPVP------DFNPADLNTYSRMFGNQIYDSQGNA 343 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ T+ + S P L Sbjct: 344 HELKQYFVKDGTNSWRMHVLIDDRNPQLPESTTPLTANIVFDAHGSVASLTGSPGLSSSN 403 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 L+ + + +I + GI+ Q+ + S Sbjct: 404 GSLLQLTGWSPTMVVDPGTSRERWIT----NGAAGSADGITIDFTHLLQHNAASSRSSAY 459 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + ++ L + + K+ +A L R+ W Sbjct: 460 VDGNSAGELKSLDVGRDGILRAGFTNGMTKDIGQVVLASFANPHGLQP--RSDTRWTATA 517 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + I V L +EL LI+ + +Y ++K I ++QT Sbjct: 518 DSGVAEYDRPGVGTLGSIVSGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 577 Query: 475 LLEG 478 L++ Sbjct: 578 LIQS 581 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/435 (6%), Positives = 92/435 (21%), Gaps = 13/435 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGGNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + E++ + Sbjct: 62 ASVQQNFNQGETVISSGNPLDMRIQGNGFFVVSDQGALAYTRAGAFLKDAENFVVDSDGG 121 Query: 122 ILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF-----LSELTVVND 175 L E + + + A A + I+ L + Sbjct: 122 RLQGYAASDRGEIIRGIRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPTFDPADP 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A + ++ ++ + + R + ++V + P + Sbjct: 182 ASYTRVTTRTIQDAGASPVPAADHELKQYFVKTEDNRWSMHVLVDGRNPVDPDSVAPLQV 241 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + E +++ N + V + K + + L Sbjct: 242 SLELKPDGSLSYSGNSQHLRKVSDNEFALQGWVPAKEVNGAWMANGSANGGVVSLPLDDA 301 Query: 296 VLIG---SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + + + E + +N + Sbjct: 302 GVSLLDPADAVMHRPVPDFNPADLNTYSRMFGNQIYDSQGNAHELKQYFVKDGTNSWRMH 361 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 L + + + + + + + L ++ + Sbjct: 362 VLIDDRNPQLPESTTPLTANIVFDAHGSVASLTGSPGLSSSNGSLLQLTGWSPTMVVDPG 421 Query: 413 KNRSDSHDLHMKSQV 427 +R Sbjct: 422 TSRERWITNGAAGSA 436 >gi|306845419|ref|ZP_07477993.1| flagellar hook protein FlgE [Brucella sp. BO1] gi|306274162|gb|EFM55978.1| flagellar hook protein FlgE [Brucella sp. BO1] Length = 396 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGNFIVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G+ + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGAEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPRGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/400 (8%), Positives = 93/400 (23%), Gaps = 16/400 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D A + + + +A + ++ + Sbjct: 121 GYYLLGAGADEAAGGLTV-----AGLNVVNVNAAALPAEGSTAGNFIVNLPSTDQAPAAG 175 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 K + D+ + + + + ++ V + E +NF+ Sbjct: 176 GYNHKTSLISYNDKGEKI------TLDVYFTKTGADEWNVSVKNAADGAEIGTTVLNFDP 229 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 V+ + + + + + + ++ N + + Sbjct: 230 TTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDY----TISQAVINGQAPSSIKGVD 285 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 ++ +A + + ++ + + P S L Sbjct: 286 VGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPRGDGM 345 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + + D+ D + + + + Sbjct: 346 GKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGS 385 >gi|323191538|gb|EFZ76799.1| flgE [Escherichia coli RN587/1] Length = 400 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 37/405 (9%), Positives = 107/405 (26%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + D+L Sbjct: 60 ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S+ S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 90/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S D L Sbjct: 59 SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D++ + T + +N + +S + Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|301645413|ref|ZP_07245354.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307136858|ref|ZP_07496214.1| flagellar basal body FlaE domain-containing protein [Escherichia coli H736] gi|331640713|ref|ZP_08341860.1| LfgE [Escherichia coli H736] gi|301076297|gb|EFK91103.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|315616827|gb|EFU97444.1| flgE [Escherichia coli 3431] gi|323181547|gb|EFZ66967.1| flgE [Escherichia coli 1357] gi|331040087|gb|EGI12295.1| LfgE [Escherichia coli H736] Length = 400 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 106/405 (26%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S+ S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|218703525|ref|YP_002411044.1| lateral flagellar hook FlgE-like protein [Escherichia coli UMN026] gi|293403355|ref|ZP_06647446.1| flgE [Escherichia coli FVEC1412] gi|300900359|ref|ZP_07118535.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218430622|emb|CAR11488.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli UMN026] gi|291429208|gb|EFF02228.1| flgE [Escherichia coli FVEC1412] gi|300356127|gb|EFJ71997.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 400 Score = 78.9 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/405 (8%), Positives = 106/405 (26%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G ++ Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSL 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S+ S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + ++ Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSLTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|251797436|ref|YP_003012167.1| hypothetical protein Pjdr2_3448 [Paenibacillus sp. JDR-2] gi|247545062|gb|ACT02081.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 270 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 65/236 (27%), Gaps = 4/236 (1%) Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 +F D + +++ +A +G+ + + + + + + Sbjct: 36 GGRVMFSDILSQTTSGVTASLEGEQGGVNAKQIGLGVTISAIDTIHTPGSAMTTNVPTDL 95 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + + + + DG + + Sbjct: 96 RIDGDGFFAVSAGGDSPTYLTRAGNFTLDGNRQLVNADGMFVLSSDGEPIVLGEDVTSFS 155 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH---DLHMK 424 + ++ D + V + L + N D Sbjct: 156 IGQDGSILAVTADG-TEAVAQLGVVKVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADD 214 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ I V+L E + +I ++ + ++++I +D++LQ ++ + Sbjct: 215 PELGTGAIIAGQLEMSNVDLTNEFTEMIVAQRGFQANSRIITTSDEILQEVVNLKR 270 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 53/225 (23%), Gaps = 8/225 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + + M + T S Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKGGRVMFSDILSQTTSGVTASLEGE- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 Q L + A+ + + + + D + S Sbjct: 60 ------QGGVNAKQIGLGVTISAIDTIHTPGSAMTTNVPTDLRIDGDGFFAVSAGGDSPT 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + + ++++ + +++ A Sbjct: 114 YLTRAGNFTLDGNRQLVNADGMFVLSSDGEPIVLGEDVTSF-SIGQDGSILAVTADGTEA 172 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L + + ++ + + + T+D L Sbjct: 173 VAQLGVVKVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADDPEL 217 >gi|330953723|gb|EGH53983.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 581 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 96/363 (26%), Gaps = 12/363 (3%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + + E + + Q +R +D E L+ ++ N + Sbjct: 229 NPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLRKLSDTEFALQGWVPAAQVNGAWAANGS 288 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D LL ++ + G +F++ Sbjct: 289 L----NGGAVSLPLSDAGASLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGNTH 344 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ T+ + N GS P + A + ++ Sbjct: 345 ELKQYFVKDGTNSWRLHVLIDDRNPQNSGSTTP---LTANIVFDSHGAVASLTGSPGLSS 401 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 PG I + GI+ Q+ + S Sbjct: 402 NGDQLKLTGWS--PVRAVDPGTGRERWISNGAAGSADGITIDFTHLLQHNAASSRSAAYV 459 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ L + + K+ +A L R+ W Sbjct: 460 DGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWTATAD 517 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + I V L +EL LI+ + +Y ++K I ++QTL Sbjct: 518 SGVAEYDVPGVGTLGGIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTL 577 Query: 476 LEG 478 ++ Sbjct: 578 IQS 580 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/429 (7%), Positives = 100/429 (23%), Gaps = 32/429 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIQAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ T ++ D + + ++ + + T Sbjct: 122 RLQGYAANDKGEIASGIRT------DLQIDTSNVGARATTRVAETINLDASLPSLARLPT 175 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + +Q +GI+ + ++++ Y ++ + Sbjct: 176 FDPDNPATYTRVATRTIQD----VGITPVPAADHELKQYF-----------VKTEADQWS 220 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKI---KALLQIRDSVVPIFQNQLDEMARVLI 298 Y + NP+ D V P G + +R F Q A + Sbjct: 221 MYVLVDGRNPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLRKLSDTEFALQGWVPAAQVN 280 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 G+++ + G + ++P + D + + + F Sbjct: 281 GAWAANGSLNGGAVSLPLSDAGASLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQ 340 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL----EYARNSIGWLEKN 414 + + + + ++ + G + Sbjct: 341 GNTHELKQYFVKDGTNSWRLHVLIDDRNPQNSGSTTPLTANIVFDSHGAVASLTGSPGLS 400 Query: 415 RSDSHDLHM 423 + Sbjct: 401 SNGDQLKLT 409 >gi|170737038|ref|YP_001778298.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819226|gb|ACA93808.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 389 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/384 (9%), Positives = 103/384 (26%), Gaps = 8/384 (2%) Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 I+ + L S N++ A N V ++ S Sbjct: 8 AGINAINGQLNQISNNIANSGTLGFKSGRANFASSYINAMPSGVSIGSTSQSMDVTGNFS 67 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 R L + ++ + D + + Sbjct: 68 ATGRGLDAAIAGKGFFISRDTDGSMVFSRAGVFNIDKNGNVTDFMSRVVQGYGVDGALGS 127 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSE---SNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 T + E + + + +P D + +A + + Sbjct: 128 LTIPTGSIPAQASSSLEYVGNMSADWTKPTVSPFDKDDPKSYNGISAATVMDSLGREHTV 187 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---LDNKLCQGIS 335 V N++ + + ++ ++ A D + I+ Sbjct: 188 TQYFVKDAGNKMQVYYAMDGQNVGNPVELSFDNTGKLVTPTATVQLDLGTPTDAAPMSIA 247 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + ++ K +LA + Y + + +A Sbjct: 248 ISYAGTTMFGGKQTTDKNRVDGYKAGTVTGVSLAEDGSIEVQYSNGKKLSAGQLAIATFQ 307 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L+ + GW + + + + ++ V++ EL L+ + Sbjct: 308 NENGLVPV--DGSGWQASSATGEPLIGKPGTGMAGKLAVRAVEQSNVDMTAELVSLMGAQ 365 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 Q+Y ++K++ ++M++ L++ + Sbjct: 366 QNYQANSKVLSTENEMMRALMQAL 389 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 35/390 (8%), Positives = 85/390 (21%), Gaps = 19/390 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRSENK 60 FN A N + Q I NI N+ + P V++ + Sbjct: 2 SFNIALAGINAINGQLNQISNNIANSGTLGFKSGRANFASSYINAMPSGVSIGSTSQSMD 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 A + + F + D + + Sbjct: 62 --VTGNFSATGRGLDAAIAGKGF------FISRDTDGSMVFSRAGVFNIDKNGNVTDFMS 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 ++ +D A + I A A +E + + D K Sbjct: 114 RVVQGYGVDGALG------SLTIPTGSIPAQASSSLEYVGNMSADWTKPTVSPFDKDDPK 167 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + A +D + + + + G + + Sbjct: 168 SYNGISAATVMDSLGREHTVTQYFVKDAGNKMQVYYAMDGQNVGNPVELSFDNTGKLVTP 227 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + P + ++ + G + + R +A Sbjct: 228 TATVQLDLGTPTDAAPMSIAISYAGTTMFGGKQTTDKNRVDGYKAGTVTGVSLAEDGSIE 287 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + ++ + + + + + P + + +V Sbjct: 288 VQYSNGKKLSAGQLAIATFQNENGLVPVDGSGWQASSATGEPLIGKPGTGMAGKLAVRAV 347 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 NV A L+ + + + Sbjct: 348 EQSNVDMTAELVSLMGAQQNYQANSKVLST 377 >gi|21748188|emb|CAD41958.1| flagellar hook protein [Pseudomonas fluorescens] Length = 181 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 2/182 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + + + + GI+ + QY S Sbjct: 1 IVTGGVAGNTLTIKDWVPGTVTDGVWKANDATANKDGIAINMGTVTQYNSASYRNPPVTD 60 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + G L + + +K +A N L W E S Sbjct: 61 GYATGQITGLKIDGSGVLFATFSNQQSKAIGQISLASFNNEQGLQP--AGGTTWKETFAS 118 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 I S VNL EL LIK + +Y + K I ++QT++ Sbjct: 119 GQPGYDAPESGTLGSIKASSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTII 178 Query: 477 EG 478 + Sbjct: 179 QM 180 >gi|148254600|ref|YP_001239185.1| flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146406773|gb|ABQ35279.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 412 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/480 (11%), Positives = 123/480 (25%), Gaps = 68/480 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + A + N S A I NI NAD Y Sbjct: 1 MSLSGALSSAISALNAQSSSLAMISDNISNADTTGYK--------------------TTS 40 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 +F++++ A S++ S + + + ++ + + S Sbjct: 41 GLFEQLVTASSNSKAYSSGGVSVSSRTNITQQGLLATTTNATDVAIQGSGFFVATDSTSA 100 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + A D + S L +++ + N K Sbjct: 101 GGETFYTRNGAFTTDNAGYLENNGYYLEGWRTDASGNVVGSGLEPVNTKVALTNGGATTK 160 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 T+ + D S + + + ++ + V + GTT E Sbjct: 161 TSLAANLPADAASGDT----FSSSMTVYDSLGQSHTLNVTWTKGTTANEWTA-------- 208 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T+ + ++ N ++ L ++ L Sbjct: 209 SFAPATASDGTVTSGTYTINFNSDGSLSTVSSTNLGITWNNGAAASSIALSFGTTGGGTD 268 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + + + S Sbjct: 269 GLTQLASGSTTP----------------------------------SVSNFSANSDGISF 294 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 + ++ + Y + VA L+ ++ S + Sbjct: 295 GTLSSISVGKNGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSNGMYT--ATATSGNAT 352 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L + I S + + + S +I +Q+Y+ ++++I +KM TL+ ++ Sbjct: 353 LQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVISAVNKMYDTLISSMR 412 >gi|254698190|ref|ZP_05160018.1| flagellar hook protein FlgE [Brucella abortus bv. 2 str. 86/8/59] gi|260762637|ref|ZP_05874969.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] gi|260673058|gb|EEX59879.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] Length = 396 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 P + + + + S G ++ S KG+ L Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + + + +L Q ++ + + Q + + Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ ++ Y + K P+A + + + + N +L Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S L I ++ +EL+ +I+ ++SY ++K+ ++ Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387 Query: 472 LQTLLEGVK 480 + L+ + Sbjct: 388 MDVLVNLKR 396 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + + N + + +++ NI NA Y R +T + T S + Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119 + + I S N + Sbjct: 61 LTDVRYGISDQGGIRSTSSTTDLTIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120 Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 L ++ + + + Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + L ND + T + D+ +V ++ ++ + I T V N + G + Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 + + +++ + V + Q + KG +V Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 ++ + + ++ + + +P D G + + Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L D + + N K +L++ + Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|71734109|ref|YP_275562.1| flagellar basal-body protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554662|gb|AAZ33873.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 586 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/425 (12%), Positives = 117/425 (27%), Gaps = 24/425 (5%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + S LK+ S I + Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ + V N A Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292 Query: 177 IKFKTAS---KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 T S + + LD D L+ + S + ++ D + + Sbjct: 293 ANGGTVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQ 352 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + NS+ + + + + + + + + + Sbjct: 353 YFVKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQ 412 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + + +GI+ Q+ + S Sbjct: 413 LTGWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSST 462 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + ++ L + + NKN +A L AR+ W E Sbjct: 463 HVDGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTES 520 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S D + + V L +EL LI+ + +Y ++K I ++Q Sbjct: 521 ADSGVADYDVSGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQ 580 Query: 474 TLLEG 478 TL++ Sbjct: 581 TLIQS 585 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A E + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236 A + + + + V T D + P D N Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 T+ N + + + ++ V Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + I+ + D + + + + Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + G + D N +FD + + +A Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406 >gi|163939559|ref|YP_001644443.1| flagellar hook protein FlgE [Bacillus weihenstephanensis KBAB4] gi|163861756|gb|ABY42815.1| protein of unknown function DUF1078 domain protein [Bacillus weihenstephanensis KBAB4] Length = 407 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/407 (9%), Positives = 97/407 (23%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ ++ Q+ ++ + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFTQTSEHNYTYKVQMRNDSKKDTKFEDVPGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AIGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q I Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSQ 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + ++ + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFTQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ F+ + + + I DG + + K L Sbjct: 225 KDTKFEDVPGAGGNMTFDAIGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370 >gi|117926379|ref|YP_866996.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] gi|117610135|gb|ABK45590.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] Length = 263 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++++ + + F + D + + + + Q + ++ Sbjct: 77 SVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGTFKLDNSGQIVTADGYV 136 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D G + NV + + +A L RN Sbjct: 137 LDPGLTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQLAQFINPAGLNAIGRNLYTES 196 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + + + + Y VN+ EE+ +I +++Y I++K + D M Sbjct: 197 G--ASGAPVVGTAGEDGLGTVQQQYLELSNVNMVEEMVNMIASQRAYEINSKTVQTADDM 254 Query: 472 LQTLLEGVK 480 L + + Sbjct: 255 LGKVASMKR 263 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/253 (7%), Positives = 53/253 (20%), Gaps = 23/253 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47 ++ + I N+ N + + R + + Sbjct: 1 MIRALWTSATGMQAQQTNIDVIANNLANTNTAGFKRSRADFQDLLYQNMRAAGAATSQAG 60 Query: 48 ENVTVVTQ-------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99 V V Q S +K + + + F ++ + + + + Sbjct: 61 NQVPVGIQLGHGVRTVSVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGT 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 S + + Y + + + + + + + Sbjct: 121 FKLDNSGQIVTADGYVLDPGLTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQLAQFI 180 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + D L ++S + + +V Sbjct: 181 NPAGLNAIGRNLYTESGASGAPVVGTAGEDGLGTVQQQYLELSNVNMVEEMVNMIASQRA 240 Query: 220 YTSDGTTLFETVP 232 Y + T+ Sbjct: 241 YEINSKTVQTADD 253 >gi|327398888|ref|YP_004339757.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] gi|327181517|gb|AEA33698.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] Length = 262 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 52/189 (27%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + ++ + F + D + + I N + ++ + Sbjct: 76 AVVKNFSQGNFKETGNPLDIAIAGHGFFQIQMPDGTTAYTRSGAFKIDNNGRIVNSEGYP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + +A L N + Sbjct: 136 LIPQITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQLAYFVNPAGLKAIGHNL--YQ 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + V++ +E+ +I +++Y + K I +D+M Sbjct: 194 ETTASGTATVDNPGSNGLGTLEQGVLEMSNVSVVQEMVEMIAAQRAYETNAKAIQTSDEM 253 Query: 472 LQTLLEGVK 480 LQT + Sbjct: 254 LQTANNVKR 262 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/240 (7%), Positives = 55/240 (22%), Gaps = 29/240 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------ISPEN 49 ++ A +I N+ N + + R + Sbjct: 1 MIRSLWTAATGMEAQQLNVDTIANNLANVNTVGFKRSRADFEDLLYQMVRQPGVASTANT 60 Query: 50 VTVVTQR--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + + KN + + F ++ + Sbjct: 61 VEPTGIQIGLGVKPAAVVKNFSQGNFKETGNPLDIAIAGHGFFQIQ------MPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELE 159 + N L + + V N + ++ + + +++ Sbjct: 115 TRSGAFKIDNNGRIVNSEGYPLIPQITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + ++ + TAS D + + + + V ++ Sbjct: 175 LAYFVNPAGLKAIGHNLYQETTASGTATVDNPGSNGLGTLEQGVLEMSNVSVVQEMVEMI 234 >gi|224419257|ref|ZP_03657263.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] gi|253826972|ref|ZP_04869857.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313142759|ref|ZP_07804952.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253510378|gb|EES89037.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313131790|gb|EFR49407.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 751 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 49/443 (11%), Positives = 103/443 (23%), Gaps = 15/443 (3%) Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + + + + E P + + Sbjct: 312 TGVEALTRGDTLILQNTNQLDGDGSNKNIRVTAMNGALEGFETQAGGAAGPFVQTTTVTT 371 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + ++ E++ A +V++ D+ FL Sbjct: 372 AFKYNYTLQTDADSTSGQFRTTEDLRALMQQDANKVKEFGGDSAAAAAGMTGPNPTFLQS 431 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQ---------RDVLLQKISEIIGISTIVRNNNDMVVY 220 V+ + + + D D L +S T + Sbjct: 432 NYTVSVKLNSNGQFEINNRDDGVNVANNQQGAAYDNLNIFVSAYNDTLTTTNVLFKNQMK 491 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR- 279 + L E + + T + + G G I Sbjct: 492 AMNTGVLVEGGNIT-STAGLRMATYSQTLDIYDSLGNKHDFTIQFTKVAGNQWNWRIIVP 550 Query: 280 --DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 ++ + + + + + + + N + L G S Sbjct: 551 EPAELIGGTAQRPNILEGGSVTFGEQGEILGFNPSTIQFKPNNGAAFPQSIDLDFGTSGG 610 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + G + +I + + VA Sbjct: 611 YDGLTSTAAESQANNIDGDGYTAGMLQDFYFDATGTMIGKFDNGQTLALAQVAVASFANY 670 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L E N E S + I S +L L+ LI V++ Sbjct: 671 EGLQESGSNLFA--ESPNSGGPTIGTAGSGGRASIQASKLEMSNSDLSRGLTQLIVVQRG 728 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + S+K I +D++L TLL + Sbjct: 729 FQASSKSITTSDQILNTLLGLKQ 751 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/468 (7%), Positives = 93/468 (19%), Gaps = 41/468 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + NI N + + + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRAATIPYAGYG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + K L + + Sbjct: 61 GVNDYSVGLGTGIETTTKIFSQGSLQNTDRKADLALEGNGMFVVSNN-----GGFTNMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ--------------KI 148 S I+ V D ++ + + V I Sbjct: 116 RDGAFSFDAVGNLVTTSGYIVQGWVRDLSKLNCDCGSGNINRVDSTGPIGNITIDPRLTI 175 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 A A + + I+ +E T + +A+ + A D +++ + Sbjct: 176 PAKATETVTGNINLTSGTKTENTTCPSPLDSTSANNYIAGGLDRLYDTADRQLEVAQDMG 235 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + + ++ ++ I I+GV ++ N Sbjct: 236 VMFNDAGEAMQLQEGQGIWVSYQTA--TTTPLHINAAAVGASSITINGVTITWNNDPTAT 293 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 Q+ + + + + S + +G + Sbjct: 294 GSSNLLAAQVAINNLKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTAMNGALEGFE 353 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 G + + + + + + L+ + + Sbjct: 354 TQAGGAAGPFVQTTTVTTAFKYNYTLQTDADSTSGQFRTTEDLRALMQQDANKVKEFGGD 413 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 A + +++ K S+ N + Sbjct: 414 SAAAAAGMTGPNPTFLQSNYTVSVKLNSNGQFEINNRDDGVNVANNQQ 461 >gi|323975930|gb|EGB71024.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 400 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 48/475 (10%), Positives = 111/475 (23%), Gaps = 77/475 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA V +S Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANA-------------------GTVGYKSMTTQFSAM 42 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + QS + ++ D + + Sbjct: 43 YAGSQAMGVSVAGTAQSISR------GGSLVSTGNALDLAINDDGFFVMCDSAGNISYTR 96 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 ++ N S +Q D L+ + + + Sbjct: 97 AGSFETDKDGYIVNASGAYLQGYP--VDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTA 154 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D D + N S TT+++++ + + + + T Sbjct: 155 NFDASDDAIDR----------TTVPFDPTNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTS 204 Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + DG + + + L Sbjct: 205 DNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLT--------------------------- 237 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 D ++ QY S S + + N Sbjct: 238 ----------SPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNSANGYASATQN 287 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + Y + +A L + W++ S + + + Sbjct: 288 GVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVP 345 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +S + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 346 GSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 >gi|167464160|ref|ZP_02329249.1| flagellar basal body rod protein FlgG [Paenibacillus larvae subsp. larvae BRL-230010] Length = 270 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 65/252 (25%), Gaps = 11/252 (4%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I F+ S I + G + + + + D++ Sbjct: 28 NVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNGQQIGLGSTVASIDTLHTNTGAMN 87 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + +SE+ G +D + Sbjct: 88 TYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKVDAQ---------RRLVTADGMLVL 138 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 DG + + + + V + L++ N Sbjct: 139 NSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKVTNPSGLMKVGGNLFEL 198 Query: 411 LEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++ + V+L E + +I ++ + ++++I + Sbjct: 199 TPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMIVAQRGFQANSRIITTS 258 Query: 469 DKMLQTLLEGVK 480 D++LQ ++ + Sbjct: 259 DEVLQEVVNLKR 270 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 8/152 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + + M + Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDL-----MSQTIRGATGP 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + IG + S + L A N + D + + D Sbjct: 56 TDTQGGVNGQQIGLGSTVASIDTLHTNTGAM---NTYVKTDMRIEGDGYFAVKTSSESDT 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 T N + Q +A + + +D D Sbjct: 113 YYLTRAGNFKVDAQRRLVTADGMLVLNSDGDP 144 >gi|28869141|ref|NP_791760.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|28852381|gb|AAO55455.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] Length = 586 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 50/423 (11%), Positives = 108/423 (25%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + + LK+ S + + Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDG---------R 232 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ ++ + N A Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S D + + + + +F++ Sbjct: 293 ASGGAVSLPLIDGSASMLDPADAVMDRPVPA---FDSLDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + + IDG + I + + Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + + + GI Q+ + S Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSANGIELDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61 FN A + N A+++ NI N+ + + + + + R+ + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A + + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANDNGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 A + + + + V T D Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223 >gi|301166803|emb|CBW26380.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 414 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 40/478 (8%), Positives = 111/478 (23%), Gaps = 65/478 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL N N ++ + NI NA + + Sbjct: 1 MSLFQNLNITANTSKQLGRKLEMVGDNINNAGTNGFKGSRAEFSEM-------------- 46 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + + D + +S + + + Sbjct: 47 -------------LNTASMGADGGDQVGAGAIIDASKRDLSQGTLAHSNSATDLAIDGTG 93 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 T A +F + + + + E ++ + Sbjct: 94 LFAVNTPFGQAYTRDGSFRFDKDG---------YLVTSDGHKVLGYNGEEGQESNTVSPL 144 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 S + + + I N T+ ++ + Sbjct: 145 QLSNGSMNASATSNVSMTMNLDAREDIKVFDIQNPRETSSFERSITVLDSKGEQQSLTMY 204 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + T + + V + AV + Sbjct: 205 FTKTAQGVWS---YNAVGKGEDLDPAVEGDVLLGTGTA---------------------- 239 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 D + ++ + + +++ Q+ ++ S + + ++ Sbjct: 240 --SFDNKGVLVNDSGLSANVTFKENDEQAINFSLTDKGVATTQFGTDTSVSSNTRNGNEA 297 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 L Y + + VA L +N ++ S Sbjct: 298 GSVVGLGFDKGGSLTLRYDNGKSVQLGKIAVAKFTNEQGLRRVGQNL--FVGNQTSGQVS 355 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L + I + V++ ++K ++S++ +++ + D +L+ ++ Sbjct: 356 LGKSGEQGRGDIRTNAIEQSNVDITNNFVDMMKTQKSFSANSEAMSAIDGLLKNVIAL 413 >gi|330967091|gb|EGH67351.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 586 Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 95/363 (26%), Gaps = 11/363 (3%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ ++ + N A Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S D + + + + +F++ Sbjct: 293 ASGGAVSLPLIDGAASVLDPADAVMDRPVPA---FDSLDLKTYSDMFANAVFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + + IDG + I + + Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + + + GI Q+ + S Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDHWVSNGAAGSTSGIELDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NK+ +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKSIGQVILASFANAQGLQ--ARSDTRWTESAE 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 41/469 (8%), Positives = 119/469 (25%), Gaps = 22/469 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61 FN A + N A+++ NI N+ + + + + + R+ + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTVGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+++ T ++ D + + ++ + + Sbjct: 122 RLQGYAANDKGEIMRGLRT------DLQIDTSNVAARATTRVAENINLDASLPSLARLPA 175 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEKM 240 D + +Q G + +++ + G + + Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDRQWSMYVLVDGRNPV 235 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +V + S G++ KI P + M+ Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGAASG 295 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + P+ + +V A + + + + + + Sbjct: 296 GAVSLPLIDGAASVLDPADAVMDRPVPAFDSLDLKTYSDMFANAVFDSQGNQHELKQYFV 355 Query: 361 FLWNVK-----NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N + G + + N +FD + + + G L+ N Sbjct: 356 KDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGGGLQLNG 415 Query: 416 SDSHDLHMKSQVVFNHISESYS-NTVGVNLQEELSFLIKVEQSYNISNK 463 + + +S + +T G+ L + L+ + + S++ Sbjct: 416 WTPAMPAERVTGQDHWVSNGAAGSTSGIELD--FTNLL--QHN-AASSR 459 >gi|317152827|ref|YP_004120875.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis Aspo-2] gi|316943078|gb|ADU62129.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis Aspo-2] Length = 670 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 53/364 (14%), Positives = 128/364 (35%), Gaps = 31/364 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 L +++N A + NA + NI NAD + Y R + S + Sbjct: 2 LTSLYNLASSALKNAQVSINNASNNIANADTEGYQRTEAAYETSYSISIYGLSVGTGANI 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + S + S+ + ++ ++ + + + + ++ D+ Sbjct: 62 TSIISLKDQFVEAQYLDASADLNRESAALTYLNQLDSLL--NQAEGGLSETLTDFFDAWN 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + + + ++ AE +V N++A ++ + A + EIE +S+ + ++++ V Sbjct: 120 ALTTDPDSLSAREDLLGIAETLVYALNSTADGLETMEAAINTEIEDAVSSANQLIADIAV 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N +I A+ D + + RD ++++++ IIG+ TI + N + + T +G +L Sbjct: 180 ANASI----AASPDNNQLISDRDQMIRELNAIIGVQTIEQENGMVTILTDEGYSL----- 230 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T + ++ D S+ ++ G++ + V+ F + + Sbjct: 231 ----------VDGTETHSLVYGDATATSALVRASDYDGELAYSGTSSEEVLLKFVSSGAD 280 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 S + L+IA I + + Sbjct: 281 GTAQFKASLDGGKTWITDENGETMLYIAGDEAAPVEIAGIEIWFEGGSADHAVGDTYTIV 340 Query: 353 DGGS 356 Sbjct: 341 PKSG 344 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 94/315 (29%) Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 A+ +T+ A F + DV+ + + +S + + V T G Sbjct: 356 NITPMTDSSGTAVNGRTSGGSLAGLFNVRDDVVTPTLDSLNDLSESIIWEVNAVHSTGAG 415 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 ET+ E + S + S + + D Sbjct: 416 LDHHETLTGSYTVEDSGALLSNSGLHFADNVTAGDFSLVTYDSDGNVSTSAIISFDPATD 475 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + + E+ G + +G G I L + + Sbjct: 476 SLDDLMAEINTAFGGELTASINASGQFVLSAGSDTGFEIASDSTGLMAALGVNTFFSGID 535 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + G N+ + V + N +L Y Sbjct: 536 ADTIAIASAVAEDTSRINAGAVGSDGLVSSGNNDIATLLAALSDSKVGVGDKNTSLTSYL 595 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + S + +Q ++ + ++ VN+ EEL L+K +Q++ + ++ Sbjct: 596 ASLVAGVGAAASSAELKLTYAQTSVDYYYQQQASASEVNVDEELINLLKYQQAFKAAAEI 655 Query: 465 IMFTDKMLQTLLEGV 479 + T M+ T+L+ V Sbjct: 656 MTVTRTMMDTVLDIV 670 >gi|229166594|ref|ZP_04294346.1| Flagellar hook protein flgE [Bacillus cereus AH621] gi|228616848|gb|EEK73921.1| Flagellar hook protein flgE [Bacillus cereus AH621] Length = 407 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/407 (9%), Positives = 97/407 (23%), Gaps = 4/407 (0%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + A Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 ++ + + +D I L + + + Sbjct: 63 PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253 +E + N V S L + I + + T+ Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTIKGNIPTGE 182 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +A ++ ++ Q+ ++ + + Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFTQTSEHNYTYKVQMRNDSKKDTKFEDVPGAGGNMTFD 242 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 G I + + ++ + +A Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTNVDGRAAATVKDCFIADGGY 302 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ Y D K+ VA L++ + N + L Q I Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIR 360 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSQ 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ + + + + + ++ + + Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFTQTSEHNYTYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 ++ F+ + + + I DG + + K L Sbjct: 225 KDTKFEDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTNV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D ++ + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370 >gi|213967581|ref|ZP_03395729.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385714|ref|ZP_07234132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060074|ref|ZP_07251615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|302134833|ref|ZP_07260823.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927882|gb|EEB61429.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] Length = 586 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 45/423 (10%), Positives = 112/423 (26%), Gaps = 20/423 (4%) Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + S G + + LK+ S + Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDGRNP------V 235 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175 + + ++ +++ +++ ++KI + + + N Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDIEFALQGWRPAHEVNGAWMSNGAANG 295 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 A LD D ++ + + ++ D + + Sbjct: 296 GAVSLPLIDGSA-SVLDPADAVMDRPVPAFDSLDLKTYSDMFANAIFDSQGNQHELKQYF 354 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + NS+ + + + + + ++ + S + N Sbjct: 355 VKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSAGLVSNNGGGLQLN 414 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + + + + GI Q+ + S Sbjct: 415 GWTPAMPAERVTGQDR----------WVSNGAAGSANGIELDFTNLLQHNAASSRSSTYV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L + + NKN +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61 FN A + N A+++ NI N+ + + + + + R+ + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L A + + ++Q ++ ++ + L + F Sbjct: 122 RLQGYA---ANDKGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 A + + + + V T D Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223 >gi|254456854|ref|ZP_05070282.1| conserved domain protein [Campylobacterales bacterium GD 1] gi|207085646|gb|EDZ62930.1| conserved domain protein [Campylobacterales bacterium GD 1] Length = 419 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/478 (8%), Positives = 112/478 (23%), Gaps = 64/478 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F + + I N+ N + +T N+ Sbjct: 2 MTQAFYTGISGLKSNQGGINIITDNLANISTVGFRGYNTEFASM-----------FEDNL 50 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ +S+ + + + S ++ + + Sbjct: 51 NTTSKNSATSSTIGAGVKLQAATMNRDQGVIQISDKS--TDLAIVGNGWFGIQGEKDTMY 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK-T 181 + + + A+ ++ I + + + T Sbjct: 109 TRGGNFTFDRDSDLITQDGFYVLGTMGANIQDDVLTGILDEVKLGDVKSQEKLRFPQTLT 168 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + ++ + IG I NN + S + + +P Sbjct: 169 YPSVASTTAKFLGNIGTDDEARTIGAGVIDGLNNRNHLRLSFTKVVPQVLPGSQWDVTAT 228 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + T +DG + Q AL+ + + Sbjct: 229 TQT---------LDGTTIYDTQTGGASFDSRGALISTTLTSIDN---------------- 263 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + + + P ++ Sbjct: 264 ------------------------NGSPVAIDLGSGFDGVVAISNIPISASSLADGTQGG 299 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ ++I + + + V L + + + S Sbjct: 300 DLEGYSVNKNAEVIATFTNGLQSSVGKIAVYHFRNEQGLDRASGARFFEGKNSGSPLFYQ 359 Query: 422 HMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I + V + L+ LI +++Y+ ++K I D+M+Q L+ Sbjct: 360 DSSGENIIGTDILNFHLEGSNVQMTTGLTDLIIFQRAYDANSKSITTADQMMQKALQM 417 >gi|228964721|ref|ZP_04125828.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar sotto str. T04001] gi|228794971|gb|EEM42470.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis serovar sotto str. T04001] Length = 139 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 37/105 (35%) Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 ++ + I + ++S + + I + Sbjct: 35 MKISAETANKLAAITDGDYKEGLSYKQALDQFIVRVASDKSAVNAYQKIHGDLLEGIQQE 94 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 95 KMSVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 139 >gi|226944492|ref|YP_002799565.1| flagellar basal body rod protein [Azotobacter vinelandii DJ] gi|226719419|gb|ACO78590.1| Flagellar basal body rod protein [Azotobacter vinelandii DJ] Length = 383 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 2/241 (0%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 S +T+ + + ++ G L + + Sbjct: 145 SGSDVITAAFDATDENTYSYANTATVFDSLGNSHELTLYFTKTGTNEWAVNAALDGAVSA 204 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S ++ + + + + + Q+ ++ Sbjct: 205 SAAQALEFTTSGLLDGYTPTSFDFAMTNGAADISFELDLTGSTQFGNDFEVSSLDQDGYT 264 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + +++ +Y + + +A + L N W+E S Sbjct: 265 AGSLVGFTIEENGNVVGNYSNEQSLVVGQIQLATFRSPEGLQPVGDN--AWVETAASGQP 322 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + F + V+L +EL LI ++++ + + + ++L+ + Sbjct: 323 LVGTAGNGQFGSLESGVVEASNVDLTKELVNLIIAQRNFQANAQSVSTQSEVLEQAVNLG 382 Query: 480 K 480 + Sbjct: 383 R 383 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 73/320 (22%), Gaps = 16/320 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N AS + NI N+ + T + V +N Sbjct: 2 GFSQALSGLNAASSNLNVVSNNIANSQTVGFKSSTTQFADVYASSRVGLGVQVAGVVQNF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLS 119 L ++ F ++ N T + + N + Sbjct: 62 TSGNLETTDRSLDLAISGSGFFRFEQAGQVVYSRNGQLTLTPEGYLQNAQGARLLGSNGA 121 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN--DAI 177 I + I A D E S ++ N + Sbjct: 122 IQIPADGLQAQPTTEFDATLNLDSGSDVITAAFDATDENTYSYANTATVFDSLGNSHELT 181 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + T + + D + + T DG T N Sbjct: 182 LYFTKTGTNEWAVNAALDGAVSASAAQALEFTTSG--------LLDGYTPTSFDFAMTNG 233 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 S+ + + F + VSS G + + V + + Sbjct: 234 AADISFELDLTGSTQFGNDFEVSSLDQDGYTAGSLVGFTIEENGNVVGNYSNEQSLVVGQ 293 Query: 298 IGSFSEKDPIAGNSENVPGL 317 I + + P Sbjct: 294 IQLATFRSPEGLQPVGDNAW 313 >gi|331666546|ref|ZP_08367420.1| LfgE [Escherichia coli TA271] gi|331065770|gb|EGI37654.1| LfgE [Escherichia coli TA271] Length = 400 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|322382385|ref|ZP_08056292.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153738|gb|EFX46113.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 266 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 65/252 (25%), Gaps = 11/252 (4%) Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 I F+ S I + G + + + + D++ Sbjct: 24 NVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNGQQIGLGSTVASIDTLHTNTGAMN 83 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + + + +SE+ G +D + Sbjct: 84 TYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKVDAQ---------RRLVTADGMLVL 134 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 DG + + + + V + L++ N Sbjct: 135 NSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKVTNPSGLMKVGGNLFEL 194 Query: 411 LEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + ++ + V+L E + +I ++ + ++++I + Sbjct: 195 TPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMIVAQRGFQANSRIITTS 254 Query: 469 DKMLQTLLEGVK 480 D++LQ ++ + Sbjct: 255 DEVLQEVVNLKR 266 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 36/148 (24%), Gaps = 8/148 (5%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 + + I NI N + + M + D Sbjct: 1 MYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDL-----MSQTIRGATGPTDTQ 55 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + IG + S + L A N + D + + D T Sbjct: 56 GGVNGQQIGLGSTVASIDTLHTNTGAM---NTYVKTDMRIEGDGYFAVKTSSESDTYYLT 112 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADK 154 N + Q +A + + +D D Sbjct: 113 RAGNFKVDAQRRLVTADGMLVLNSDGDP 140 >gi|331671804|ref|ZP_08372600.1| LfgE [Escherichia coli TA280] gi|331070793|gb|EGI42152.1| LfgE [Escherichia coli TA280] Length = 400 Score = 78.1 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + + +S + + + D+L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDAGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + ++ Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 91/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S D L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+A + T + +N + + +S + Sbjct: 119 YPVDDAGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV + + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|331007439|ref|ZP_08330616.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330418746|gb|EGG93235.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 261 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 51/182 (28%), Gaps = 2/182 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + G + + F + + + + N + FL Sbjct: 76 ATQKQFTGGSLQVTEQPLDLAINNRGFFQIQMPSGETAYTRNGQFHLNSNGDIVNASGFL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + N+ + ++ + + L N Sbjct: 136 LEPSISIPENTNNITISQDGIVSASILGEATPQELGQITITDFVNPAGLQALGGNVFAQ- 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + I + V++ EE+ +I +++Y +++K++ D+M Sbjct: 195 -TAASGDPQTGTAGESGLGSIIQGSLENSNVDIVEEMVNMITTQRAYEMNSKVVSTADQM 253 Query: 472 LQ 473 LQ Sbjct: 254 LQ 255 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 55/245 (22%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + +Q SI N+ NA + R Sbjct: 1 MNPALYVSKTGLSAQDRQLTSISNNLANASTIGFKRDRVNFEDLLYQIQRQPGGQSSQNT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L + + F ++ Sbjct: 61 QLPSGLQLGTGVRVVATQK---QFTGGSLQVTEQPLDLAINNRGFFQIQ------MPSGE 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE--I 156 + + + N S +L ++ + I +A + Sbjct: 112 TAYTRNGQFHLNSNGDIVNASGFLLEPSISIPENTNNITISQDGIVSASILGEATPQELG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 ++ I++ + + AS + + + + + Sbjct: 172 QITITDFVNPAGLQALGGNVFAQTAASGDPQTGTAGESGLGSIIQGSLENSNVDIVEEMV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|330943208|gb|EGH45615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 565 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/364 (9%), Positives = 94/364 (25%), Gaps = 15/364 (4%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174 + + ++ + +++ + + + K+ + + + + + + +N Sbjct: 215 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLN 274 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + A V+ + + + G +F++ Sbjct: 275 GGAVLLPLNDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 327 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ T+ + N S P + A + ++ Sbjct: 328 HELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLS 384 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + I + GI+ Q+ + S Sbjct: 385 SNGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAY 442 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + L + + K+ +A L R+ W Sbjct: 443 VDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRWTATA 500 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + I V L +EL LI+ + +Y ++K I ++QT Sbjct: 501 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 560 Query: 475 LLEG 478 L++ Sbjct: 561 LIQS 564 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/432 (5%), Positives = 87/432 (20%), Gaps = 18/432 (4%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80 NI N + + + + + + + G+ + Sbjct: 1 MEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRLASVQQNFNQGETVIS 60 Query: 81 QS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136 + ++ + L ++ E+ Sbjct: 61 SGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGGRLQGYAANDKGEIAS 120 Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196 ++Q ++ ++ + L + F + Sbjct: 121 GIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDPATYTRVATRTIQ 177 Query: 197 ---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247 ++ + + + + ++V + P ++ E +++ Sbjct: 178 DVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAPLQVSLELKPDGSLSY 237 Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQLDEMARVLIGSFSEKD 305 N + V + + + L++ L+ Sbjct: 238 SGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLNGGAVLLPLNDAGASLLDPGDTVM 297 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N L + QG + + S+ + + Sbjct: 298 HRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSWRMHALIDDRNPQNSA 357 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 +++ + ++ T + L ++ R Sbjct: 358 STTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVDPGTARERWISNGAAG 417 Query: 426 QVVFNHISESYS 437 I + Sbjct: 418 SADGITIDFTRL 429 >gi|300936126|ref|ZP_07151065.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|300458704|gb|EFK22197.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 400 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 46/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV + + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|226327736|ref|ZP_03803254.1| hypothetical protein PROPEN_01609 [Proteus penneri ATCC 35198] gi|225203440|gb|EEG85794.1| hypothetical protein PROPEN_01609 [Proteus penneri ATCC 35198] Length = 87 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%) Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 I+ T+ + I + + + + I E + GVNL EE + Sbjct: 1 MIDGKTTIAGGYGSLISMVGNKVNTAQVDFDAQVSITKSIVEQQQSVSGVNLDEEYGEMY 60 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLE 477 ++++ Y + K+I + M +++ Sbjct: 61 RIQEYYMANAKVIQTANSMFDAIMQ 85 >gi|331645418|ref|ZP_08346522.1| LfgE [Escherichia coli M605] gi|331045580|gb|EGI17706.1| LfgE [Escherichia coli M605] Length = 400 Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 103/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 46/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV + + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|260853466|ref|YP_003227357.1| putative lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|260866413|ref|YP_003232815.1| putative lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|257752115|dbj|BAI23617.1| predicted lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|257762769|dbj|BAI34264.1| predicted lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|323158103|gb|EFZ44202.1| hypothetical protein ECEPECA14_0101 [Escherichia coli EPECa14] gi|323178494|gb|EFZ64072.1| hypothetical protein ECOK1180_3007 [Escherichia coli 1180] Length = 400 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPVDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPVDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|218778846|ref|YP_002430164.1| flagellar basal body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] gi|218760230|gb|ACL02696.1| Flagellar basal-body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] Length = 260 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + + ++ + Y + + R Sbjct: 80 IFVQGDYSQTGNDLDWAIEGNGFFKVLSNNEEVYTRAGSFKIDSEGYITTAAGERLQPEF 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ L + + L RN + S Sbjct: 140 AVPADAVLISVDSGGKLTAFGPANEEVATYDITLYDFANPAGLYSMGRNL--YKTTEASG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 F IS+ + VN+ EE+ +I +++Y ++K I D MLQ Sbjct: 198 EEVEGTPGDEGFGTISQGFLEMSNVNVVEEMVTMIIAQRAYEANSKAIQTADSMLQIANN 257 Query: 478 GVK 480 + Sbjct: 258 VKR 260 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/165 (7%), Positives = 30/165 (18%), Gaps = 34/165 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + N+ N + + R Sbjct: 1 MLRGLWTAATGMEAQQLNIDVVSNNLANINTTAFKRSRPDFQDLMYQTIRVAGATTTGGT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + F + N Sbjct: 61 QLPTGLQVGMGSKPTGVQKI---FVQGDYSQTGNDLDWAIEGNGFFKVLSN-------NE 110 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + E Y + + L A+ V+ + ++ + Sbjct: 111 EVYTRAGSFKIDSEGYITTAAGERLQPEFAVPADAVLISVDSGGK 155 >gi|256020228|ref|ZP_05434093.1| flagellar basal body FlaE domain-containing protein [Shigella sp. D9] gi|332281390|ref|ZP_08393803.1| lateral flagellar hook protein [Shigella sp. D9] gi|332103742|gb|EGJ07088.1| lateral flagellar hook protein [Shigella sp. D9] Length = 400 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|218663526|ref|ZP_03519456.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 384 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 99/384 (25%), Gaps = 3/384 (0%) Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++S + ++ S+ + + D A F + + A Sbjct: 4 SSSGNYNSGGVQTSVRQAISQQGDISYTTSAYDLAISGDGFFIVEGADGTPVLTRAGDFS 63 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 NL + A + D L +V +S I S N + Sbjct: 64 VDSDGNLVNSAGYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLN 123 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 TT + + ++ + + + Sbjct: 124 SEATVVTDTTTLPSANTSAVTDDTQKMSLVAYDSLGATVQYDYYFTKTGVTTDASGAVTG 183 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + V + S S + + L A +D + I+ Sbjct: 184 STWEVAVYRNADAATGGTTSFPYSSSAVSVATLSFDANGQLTSATDTDIVDPVTAKTITM 243 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 Q S+ S + ++ + Y + K P+A + + Sbjct: 244 DYSDFTQLASDFSATGS-ADGQAASSVSSVSIDTDGVVSVSYANGTTKALYQIPLANVAS 302 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + N +S I + V+L EL+ +I+ ++ Sbjct: 303 PDNLTLLSGNVYT--ANGQSGVTVTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQR 360 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 SY ++K+ ++ L+ + Sbjct: 361 SYTANSKVFQTGSDIMDVLVNLKR 384 >gi|168180921|ref|ZP_02615585.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|182668204|gb|EDT80183.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|322806984|emb|CBZ04554.1| flagellar hook protein FlgE [Clostridium botulinum H04402 065] Length = 334 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 82/317 (25%), Gaps = 14/317 (4%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + F Q +S+ + +T N G L V Sbjct: 20 DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVG--LGVQVAGIF 77 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + T + + IDG + + + ++ Sbjct: 78 TKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDNEGAINGGTMEVSFTKD 137 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + I + + G I D D + + +++ + L Sbjct: 138 GSFNLDEDGSLITSDGLRIMGYAINDAAITKDATTGKIKVGFKNADEDPKADATKLVPLA 197 Query: 356 S------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S+K + ++ D + +A L + +N Sbjct: 198 IPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYR 257 Query: 410 WLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + + + + V+L EE + +I +++ K Sbjct: 258 NSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGK 317 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D++LQ L+ + Sbjct: 318 MITTGDEILQELVNLKR 334 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 25/142 (17%), Gaps = 26/142 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + +D ++ Sbjct: 61 GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 117 Query: 100 PTHYISKLRDSLESYSKNLSED 121 + S Sbjct: 118 SGDNEGAINGGTMEVSFTKDGS 139 >gi|330899403|gb|EGH30822.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 581 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 92/363 (25%), Gaps = 12/363 (3%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + + E + + Q + +D E L+ ++ N + Sbjct: 229 NPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGS 288 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDI 235 + + D LL ++ + G +F++ Sbjct: 289 L----NGGAVSLPLNDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTH 344 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ T+ + N S P + A + ++ Sbjct: 345 ELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLSS 401 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + I + GI+ Q+ + S Sbjct: 402 NGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAYV 459 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + L + + K+ +A L R+ W Sbjct: 460 DGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRWTATAD 517 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + I V L +EL LI+ + +Y ++K I ++QTL Sbjct: 518 SGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTL 577 Query: 476 LEG 478 ++ Sbjct: 578 IQS 580 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 29/447 (6%), Positives = 96/447 (21%), Gaps = 18/447 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ ++Q ++ ++ + L + F Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178 Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + ++ + + + + ++V + P Sbjct: 179 DDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQL 290 ++ E +++ N + V + + + L Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLNGGAVSLPL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++ L+ N L + QG + + S+ Sbjct: 299 NDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + +++ + ++ T + L ++ Sbjct: 359 RMHALIDDRNPQNSASTTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVD 418 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYS 437 R I + Sbjct: 419 PGTARERWISNGAAGSADGITIDFTRL 445 >gi|119477951|ref|ZP_01618051.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] gi|119448864|gb|EAW30106.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] Length = 261 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 2/183 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + V F + D + + I + + + L Sbjct: 77 TQKEFSDGSVQITEKPLDLAIVGRGFFEILMPDGTSAYSRNGQFQINADGEIVNARGLLL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 V + + + V L N ++E Sbjct: 137 QPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNITVTNFINPTGLQSIGSNL--FIE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + V++ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGTPQQGEPGIDGLGRLEQGALENSNVDVVEELVSMITTQRTYEMNSKVISTADQML 254 Query: 473 QTL 475 Q + Sbjct: 255 QYI 257 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 46/183 (25%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + A+I N+ NA Y R + Sbjct: 1 MNQALWISKTGLSAQDTRLATISNNLANAATVGYKRDSVVFEDLLYQIRRQPGAQSSQNT 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T D + + + + F + S Sbjct: 61 QLPSGLQVGTGVRVIGTQKEFSDGSVQITEKPLDLAIVGRGFFEIL------MPDGTSAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + N +L ++ + + ++ +I A + I+ Sbjct: 115 SRNGQFQINADGEIVNARGLLLQPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNIT 174 Query: 162 NLR 164 Sbjct: 175 VTN 177 >gi|325295399|ref|YP_004281913.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065847|gb|ADY73854.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] Length = 266 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 2/148 (1%) Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 ++E + S S ++ + N + Sbjct: 113 AYTRAGNFQLNEEGYIVTPEGYKLSPNIQISSPETVVNISISPNGKVYVVRNTGGVQTTE 172 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + L N + ++ + S + F +++ + VN+ Sbjct: 173 EVGTIKLYRFINPAGLKALGGNLL--VKTDASGEPVEGDPNTDGFGKLAQGFLEASNVNI 230 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EE+ LI +++Y +++K I D+ML Sbjct: 231 VEEMVNLIVAQRAYEVNSKGITTADEML 258 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 36/186 (19%), Gaps = 34/186 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + I NI N + + + Sbjct: 1 MLRALWTSATGMEAQQTNLDVISHNIANVNTVGFKKSRANFEDLIYQDIRDPGVMSSEEN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L + F ++ Sbjct: 61 RVPSGIQIGLGVKVSDVSKI---FTQGSLMKTDKPLDLAIQGAGFFKIE------LPGGG 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDIL-GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + E Y L I + E VV + +V +R + Sbjct: 112 EAYTRAGNFQLNEEGYIVTPEGYKLSPNIQISSPETVVNISISPNGKVYVVRNTGGVQTT 171 Query: 158 LEISNL 163 E+ + Sbjct: 172 EEVGTI 177 >gi|188494513|ref|ZP_03001783.1| Flagellar basal body protein FlgE [Escherichia coli 53638] gi|188489712|gb|EDU64815.1| Flagellar basal body protein FlgE [Escherichia coli 53638] Length = 400 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|330875984|gb|EGH10133.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 586 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 96/363 (26%), Gaps = 11/363 (3%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 N + + E+ + + Q +R +D E L+ ++ + N A Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 S D + + + + +F++ Sbjct: 293 ASGGAVSLPLIDGAASVLDPADAVMDRPVPA---FDSLDLKTYSDMFANAIFDSQGNQHE 349 Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 ++ + + IDG + I + + Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 L + + + + GI Q+ + S Sbjct: 410 AL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSTSGIELDFTNLLQHNAASSRSSTHV 464 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + ++ L+ + + NK+ +A L AR+ W E Sbjct: 465 DGHAAGQLSSLSVGRDGILLAGFTNGMNKSIGQVILASFANAQGLQ--ARSDTRWTESAE 522 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S D + + V L +EL LI+ + +Y ++K I ++QTL Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582 Query: 476 LEG 478 ++ Sbjct: 583 IQS 585 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 41/469 (8%), Positives = 118/469 (25%), Gaps = 22/469 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61 FN A + N A+++ NI N+ + + + + + R+ + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+++ T ++ D + + ++ + + Sbjct: 122 RLQGYAANDKGEIMRGLRT------DLQIDTSNVAARATTRVAENINLDASLPSLARLPA 175 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEKM 240 D + +Q G + +++ + G + + Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDRQWSMYVLVDGRNPV 235 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + +V + S G++ KI P + M+ Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGAASG 295 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + P+ + +V A + + + + + + Sbjct: 296 GAVSLPLIDGAASVLDPADAVMDRPVPAFDSLDLKTYSDMFANAIFDSQGNQHELKQYFV 355 Query: 361 FLWNVK-----NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 N + G + + N +FD + + + G L+ N Sbjct: 356 KDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGGALQLNG 415 Query: 416 SDSHDLHMKSQVVFNHISESYS-NTVGVNLQEELSFLIKVEQSYNISNK 463 + +S + +T G+ L + L+ + + S++ Sbjct: 416 WTPAMPAERVTGQDRWVSNGAAGSTSGIELD--FTNLL--QHN-AASSR 459 >gi|170681389|ref|YP_001742373.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] gi|170519107|gb|ACB17285.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] Length = 400 Score = 77.8 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGSCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS S L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGSCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|170021360|ref|YP_001726314.1| flagellar basal body FlaE domain-containing protein [Escherichia coli ATCC 8739] gi|169756288|gb|ACA78987.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] Length = 400 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 90/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D++ + T + +N + + +S + Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|197285508|ref|YP_002151380.1| flagellar basal-body rod protein [Proteus mirabilis HI4320] gi|227355999|ref|ZP_03840391.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] gi|194682995|emb|CAR43442.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis HI4320] gi|227163987|gb|EEI48889.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] Length = 260 Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + + L N +LE S + + + + Y T VN Sbjct: 168 QQVGQLTLTTFINDSGLESVGENL--YLETASSGAPTENAPGINGAGLLYQGYVETSNVN 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 226 VAEELVNMIQTQRAYEINSKAISTSDQMLQKLTQL 260 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 27/136 (19%), Gaps = 21/136 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 +P + + T + + LH+ + + Sbjct: 61 NAPSGLQIGTGVR---PVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRD 117 Query: 105 SKLRDSLESYSKNLSE 120 + S Sbjct: 118 GSFQMDQNGQLVTSSG 133 >gi|218461961|ref|ZP_03502052.1| flagellar hook protein FlgE [Rhizobium etli Kim 5] Length = 316 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 28/314 (8%), Positives = 63/314 (20%), Gaps = 3/314 (0%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119 + + I + + E N + Sbjct: 61 QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L D+ V + + I + L V Sbjct: 121 GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSNAKVAPVAPA 180 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 S + A D ++ + ++ + V Sbjct: 181 TLPSANLATTTADT--KKFSMVAYDRLGNKVMYDFYFTKTAVVTPPPAPPGVASTWEVSI 238 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + F V ++ ++ + L + Sbjct: 239 YRNADAAVGGTTSFPYSTAVGDVGNGSLTFDANGKMISFGAIPITDPVTGLTINMDLSGF 298 Query: 300 SFSEKDPIAGNSEN 313 + D + N Sbjct: 299 TQLGADFAGTGTPN 312 >gi|300817270|ref|ZP_07097488.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|307313519|ref|ZP_07593140.1| fagellar hook-basal body protein [Escherichia coli W] gi|300530246|gb|EFK51308.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|306906687|gb|EFN37198.1| fagellar hook-basal body protein [Escherichia coli W] gi|315059542|gb|ADT73869.1| flagellar hook protein [Escherichia coli W] gi|323171064|gb|EFZ56713.1| flgE [Escherichia coli LT-68] gi|323379899|gb|ADX52167.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 400 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|307721135|ref|YP_003892275.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] gi|306979228|gb|ADN09263.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + + I + ++ + Sbjct: 76 AINKIFSEGSLKQTDNNLDLAITGKGFFKMELPDGTEVYSKNGAFKIDQDGTVVNSDGYT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V N+ + + L N ++ Sbjct: 136 LIPQIVIPPDATNINIGTDGTVTVIQPGQTQATQIGQIQTTNFINPAGLHAMGDNL--YI 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + S + I + + V L EL+ LI +++Y+ ++K+I +D+M Sbjct: 194 ETDSSGQPVEGIPGVDGLGTIRQGFVELSNVELVVELTDLITGQRAYDANSKIITTSDEM 253 Query: 472 LQTLLEGVK 480 LQT + Sbjct: 254 LQTTNNLKR 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 51/212 (24%), Gaps = 29/212 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + + + Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFADLMYHVMEYAGTSTSDTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK + L + + + F ++ Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNNLDLAITGKGFFKME------LPDGTEVY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + N L ++ +A + + + +Q + A + +++ Sbjct: 115 SKNGAFKIDQDGTVVNSDGYTLIPQIVIPPDATNINIGTDGTVTVIQPGQTQATQIGQIQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 +N + ++ +S Sbjct: 175 TTNFINPAGLHAMGDNLYIETDSSGQPVEGIP 206 >gi|306813303|ref|ZP_07447496.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] gi|305854066|gb|EFM54505.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] Length = 400 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A+ E + NN + +S + + + Sbjct: 2 SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + + + + +S + + + +L Sbjct: 60 ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 V + ++ I ++ S T + + ++ + Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 D + + + D+ + + + + DP G + Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 + D ++ QY S S + + N + + Sbjct: 240 NTPQTIEF--QTDAAAPIDLTVDYSSCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 Y + +A L + W++ S + + + +S Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V++ EL L+ +++Y + K+I + ++ L + + Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A N ++Q I NI NA Y T + + + Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S + L D N Y N S L Sbjct: 59 SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ + T + +N + + +S + Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 D L + S + N ++ VP N+ + Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 TS + P I+ ++ SV N + + + Sbjct: 237 TSPNTPQTIEFQTDAAAPIDLTVDYSSCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 A S L + N+ S + GS + L + Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + D+ + + + + T L+ Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393 >gi|226950067|ref|YP_002805158.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] gi|226841875|gb|ACO84541.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] Length = 334 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 35/319 (10%), Positives = 75/319 (23%), Gaps = 18/319 (5%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + F Q +S+ + +T N G + Sbjct: 20 DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIFTK 79 Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290 T + + FI G S+ + G + + V ++ Sbjct: 80 FTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDNEGAINGGTMEVSFTKDG- 138 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 + L S K+ G Sbjct: 139 ---SFNLDEDGSLITSDGLRIMGYAIESADITKDATTGKIKVGFKNADEDPKAVTDKLVP 195 Query: 351 LRDGGSVSKKFL---WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L + K + ++ D + +A L + +N Sbjct: 196 LAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNL 255 Query: 408 IGWLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + + + V+L EE + +I +++ Sbjct: 256 YRNSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQAC 315 Query: 462 NKLIMFTDKMLQTLLEGVK 480 K+I D++LQ L+ + Sbjct: 316 GKMITTGDEILQELVNLKR 334 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 15/175 (8%), Positives = 30/175 (17%), Gaps = 26/175 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + +D ++ Sbjct: 61 GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 117 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + S A E I DA Sbjct: 118 SGDNEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAIESADITKDATT 172 >gi|194428463|ref|ZP_03061003.1| flagellar hook protein FlgE [Escherichia coli B171] gi|194413515|gb|EDX29797.1| flagellar hook protein FlgE [Escherichia coli B171] Length = 396 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 29/283 (10%), Positives = 55/283 (19%), Gaps = 9/283 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q A K + S+ A Sbjct: 116 LTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNA 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ + D + NN + S T + F Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPTGTAEPAMKLVFNANGV 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T N S ++ + V Sbjct: 236 LTSNPTENITTGAINGADPATFSLSFLNSMQQNTGANNIVATT 278 >gi|206974982|ref|ZP_03235897.1| flagellar hook protein FlgE [Bacillus cereus H3081.97] gi|206747001|gb|EDZ58393.1| flagellar hook protein FlgE [Bacillus cereus H3081.97] Length = 407 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 31/338 (9%), Positives = 73/338 (21%), Gaps = 11/338 (3%) Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + T ++ IS I+ Sbjct: 72 MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268 + T M S ++ + G Sbjct: 132 GQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191 Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +R D +F+E D G + Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251 Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + + + + +A ++ Y D Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 K VA L++ + N + + + Q + V Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGGAQEGANV 369 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/282 (9%), Positives = 57/282 (20%), Gaps = 38/282 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + D N Sbjct: 61 TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + D + V +Q A I Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-TGIPGPLQVPMGSAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + + + + + + + Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNDSKKETAFN 230 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 DG ++ F+ + + I +G V + Sbjct: 231 EVDG------AGGEVKFDAVGKPNPVNPEANIPFNGGTVKID 266 >gi|229058387|ref|ZP_04196771.1| Flagellar hook protein flgE [Bacillus cereus AH603] gi|228719896|gb|EEL71486.1| Flagellar hook protein flgE [Bacillus cereus AH603] Length = 407 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 2/217 (0%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +A ++ ++ Q+ ++ + + G Sbjct: 193 DNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKATTFEDVPGAGGNMTFDAVGNPSPKEQ 252 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 I + + ++ + G +A ++ Y D Sbjct: 253 SANIPFNGGNIKLDLSQLTNHPTDKTLSVTGVDGRAAATVKDCFIADGGYVMVKYSDGSM 312 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 K VA L++ + N + L Q I V+ Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIRGGAQEGANVD 370 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 371 LSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 31/386 (8%), Positives = 79/386 (20%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKLSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + I + I Sbjct: 113 FTRKGTFAISSDYYITNTEGQYVFAYPANAATGEVD--------LSGIPGPLQIPMGTAI 164 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 +R + A A + +D + + ++ + + Sbjct: 165 GGIRTSKGVVGGNIPADAKAIAQEIPVYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSK 224 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + ++ F+ + + + +S I +G + + K L Sbjct: 225 KATTFEDVPGAGGNMTFDAVGNPSPKEQSANIPFNGGNIKLDLSQLTNHPTDKTLSVTGV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + +A D + + + + + Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + NV Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370 >gi|222095377|ref|YP_002529437.1| flagellar hook protein flge [Bacillus cereus Q1] gi|221239435|gb|ACM12145.1| flagellar hook protein [Bacillus cereus Q1] gi|324325771|gb|ADY21031.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 406 Score = 77.4 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 37/413 (8%), Positives = 96/413 (23%), Gaps = 17/413 (4%) Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + A + +S + + K + ++ + Sbjct: 4 ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAGTNP 63 Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 N K+ + I+ N + + R Sbjct: 64 KSIGNGV-----KMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGN---MEFTR 115 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 S+ +T + + G +P + + S + Sbjct: 116 KGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGVVG 175 Query: 255 DGVVVSSNQGSA--VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 + + S +R ++ ++ S E+ + Sbjct: 176 GNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEEFKDVQGAG 235 Query: 313 NVPGLFIADGIKD-----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + + ++ + G Sbjct: 236 GNMTFDAVGNPSPKEQAANIPFNGGNVKLDLSNLTNHPTDKTLSVTGVDGRAAATVKDCF 295 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 +A ++ Y D K VA L++ + N + L Q Sbjct: 296 IADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQN 353 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + V+L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 354 GAGKIRGAAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 406 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/293 (7%), Positives = 60/293 (20%), Gaps = 30/293 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + + Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKG 172 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ ++ I + + ++ S + + + V Sbjct: 173 VVGGNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEEFKDVQ 232 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + G F+ V E+ + + + + + + G Sbjct: 233 GAGGNMTFDAVGNPSPKEQAANIPFNGGNVKLDLSNLTNHPTDKTLSVTGVDG 285 >gi|4580018|gb|AAD24206.1|AF049342_4 flagellar hook protein FlgE [Treponema denticola ATCC 33520] Length = 237 Score = 77.4 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 10/180 (5%), Positives = 37/180 (20%), Gaps = 14/180 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ N + I N+ N + + R R + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 61 -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A+ + + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 E N + + + + E ++ + + + ++++ + + + Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EAEGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179 >gi|146281773|ref|YP_001171926.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri A1501] gi|145569978|gb|ABP79084.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri A1501] Length = 261 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + F + D + S + + Q ++ + Sbjct: 77 TQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLDSDGQVVTSNGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V + ++ + A L N +LE Sbjct: 137 EPAIVVPAETQTFTVGEDGTVSVTTLGNAQPQIIGNIQTADFINPAGLQAMGSNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + ++ V++ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 32/185 (17%), Gaps = 33/185 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L ++ + +I N+ N + R Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L + + F + Sbjct: 61 ELPSGLQLGTGVRVTGTQKI---FTTGSLQTTEQPLDMAINGRGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + L ++ AE +A +I Sbjct: 112 VSYTRDGSFHLDSDGQVVTSNGYALEPAIVVPAETQTFTVGEDGTVSVTTLGNAQPQIIG 171 Query: 159 EISNL 163 I Sbjct: 172 NIQTA 176 >gi|118581849|ref|YP_903099.1| flagellar basal body rod protein FlgG [Pelobacter propionicus DSM 2379] gi|118504559|gb|ABL01042.1| flagellar basal-body rod protein FlgG [Pelobacter propionicus DSM 2379] Length = 262 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 49/182 (26%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + I+ D + + Q R Sbjct: 81 FTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAFKKDDQGRIVTPNGDPLLPEI 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 K G ++ + ++ + E + S + Sbjct: 141 VIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQLALFANPAGLFSMGKNLYKETDSSGT 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Q +++ V++ EE+ +I +++Y ++K + D+MLQT Sbjct: 201 PTTGTPGQDGLGTVAQGMLEMSNVSVAEEMVNMIIGQRAYEANSKAVQAADEMLQTANNL 260 Query: 479 VK 480 + Sbjct: 261 RR 262 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 10/174 (5%), Positives = 30/174 (17%), Gaps = 15/174 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48 ++ A + + + N+ N + + R + Sbjct: 1 MMRALWTAASGMQAQQKNIDVVAHNLANVNTTGFKRSRADFEDLIYQNQRSTGSPATNTT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107 V Q + + Q + + Sbjct: 61 QVPTGIQIGLGTRLASVSKLFTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + D L ++ + + I Sbjct: 121 KKDDQGRIVTPNGDPLLPEIVIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQ 174 >gi|327398496|ref|YP_004339365.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181125|gb|AEA33306.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 589 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 39/386 (10%), Positives = 99/386 (25%), Gaps = 20/386 (5%) Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + N + + NA++ + + D + + + + Sbjct: 206 TLRVNFNSVFNSNGELLNAQDGDNFQISYDGGTTWHTYEYDNDGNVSAGAEGFTTIDDLL 265 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N F D + + + I I + + L Sbjct: 266 SNMQSDVVADGITAEVSFEDGQVKIKNTGNNDISIRVRPTTEDPTFPTPQENQKLT--TV 323 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + S N +V S S K KI + ++ L Sbjct: 324 FENLNQVVEPGETISSQNMETATHIVHSFFYDSTGDKHKIDVTFYRINQNQWAYEVSLPN 383 Query: 293 MARVLIG-------------SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + P + N I + Sbjct: 384 NDGTVANNTGVVSFDKNGGLDVNTQSPTVNVTLNSGAPPTQLLINLWNTDSGGYEGNQFT 443 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 Q+ + S + + +++ Y + + + ++ Sbjct: 444 GLTQFAMDSDTSFQDQDGSHSGILQKVFVDRDGNIMGTYSNGNSYSIAKLAISKFMNPQG 503 Query: 400 LLEYARNS-----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L + E S + + ++ I ++ V+L E LI+ Sbjct: 504 LKREGKTMFKTTPNADSEDVLSSYGFIGVANEGGRGMILSNHLEASNVDLGEAFVNLIEY 563 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + ++K + D++LQT ++ + Sbjct: 564 QRGFEANSKGVTTADQLLQTAIQLKR 589 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 34/437 (7%), Positives = 94/437 (21%), Gaps = 32/437 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ + N SI NI N + Y + Sbjct: 1 MIRALYTSSNGLFEQQLGVDSITNNIANVNTIGYKKTRPTFASLLYQTQKLGMPGENPMQ 60 Query: 52 ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V +S + M + L + + F L + + + Sbjct: 61 IGLGVKLQSTDTIMSEGTLITGNKDTDLAIEGKGFFTLLDP--SSKDSASYLFTRAGDFS 118 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNF----NTSAREVQKIRADADKEIELEISNLR 164 + N + ++ + + +++ + T+ I+ E + Sbjct: 119 FDADGNLVNPNGYMVVGWLAEQSQQGTGYYIPEDPTTGLPTGTIQPINISSYEDVPAVAS 178 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE-----------IIGISTIVRN 213 ++ +N + K S + R + IS Sbjct: 179 TYIRFKANLNSSSKVDEYSPLKTSNDPTLRVNFNSVFNSNGELLNAQDGDNFQISYDGGT 238 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 Y +DG + +++ ++ I + Sbjct: 239 TWHTYEYDNDGNVSAGAEGFTTIDDLLSNMQSDVVADGITAEVSFEDGQVKIKNTGNNDI 298 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSF-SEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 ++ + P F + + ++ + + Sbjct: 299 SIRVRPTTEDPTFPTPQENQKLTTVFENLNQVVEPGETISSQNMETATHIVHSFFYDSTG 358 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + N + + N + + ++ + + Sbjct: 359 DKHKIDVTFYRINQNQWAYEVSLPNNDGTVANNTGVVSFDKNGGLDVNTQSPTVNVTLNS 418 Query: 393 GINTNVTLLEYARNSIG 409 G L+ G Sbjct: 419 GAPPTQLLINLWNTDSG 435 >gi|152990359|ref|YP_001356081.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] gi|151422220|dbj|BAF69724.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] Length = 266 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 2/151 (1%) Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 I + + ++ + + + Sbjct: 113 AYTRAGNFQIDNEGNLVTDQGYKVLPNIQINAPETLVGISISPNGKVVAVRSEGVGQTTE 172 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + L N +++ S F +S+ + VN+ Sbjct: 173 ELGQLKLYRFINPAGLKAIGGNL--FVQSEASAEPIEGDPDTNGFGKLSQGFLEMSNVNI 230 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 EE+ LI +++Y +++K I D+ML+T+ Sbjct: 231 VEEMVNLIVAQRAYEMNSKGITTADEMLRTV 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 41/183 (22%), Gaps = 28/183 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + NI N + + + Sbjct: 1 MIRALWTSASGMQAQQTNLDVVSNNIANVNTTGFKQSRANFEDLIYQNIKDPGVENGNGN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + L + + F ++ Sbjct: 61 RLPTGIQIGLGVRVADVAKIFSQGSLKHTERDLDVAIQGKGFFKIE------LPGGGEAY 114 Query: 102 HYISKLRDSLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E + +L I+ E +V + +V +R++ + E+ Sbjct: 115 TRAGNFQIDNEGNLVTDQGYKVLPNIQINAPETLVGISISPNGKVVAVRSEGVGQTTEEL 174 Query: 161 SNL 163 L Sbjct: 175 GQL 177 >gi|229195966|ref|ZP_04322719.1| Flagellar hook protein flgE [Bacillus cereus m1293] gi|228587525|gb|EEK45590.1| Flagellar hook protein flgE [Bacillus cereus m1293] Length = 407 Score = 77.0 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 32/338 (9%), Positives = 74/338 (21%), Gaps = 11/338 (3%) Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + T ++ IS I+ Sbjct: 72 MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268 + T M S ++ + G Sbjct: 132 GQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191 Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +R D +F+E D G + Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251 Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + + + + +A ++ Y D Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 K VA L++ + N + + + Q + S V Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 >gi|188587423|ref|YP_001918968.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352110|gb|ACB86380.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] Length = 265 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 49/188 (26%), Gaps = 2/188 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R ++ + F + + + S I ++ Sbjct: 79 ATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRDGSFKIDGEGNLVTSDGLH 138 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ +I D +A L N Sbjct: 139 VQSFDGEIPQEATNVSITEEGRVIATLEDGETDEIGEIEIASFINPAGLEAQGSNLYS-- 196 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + + + + + VN+ EE+ +I +++Y ++K I TD+M Sbjct: 197 ATAASGDASVGLPGENGRGQLQQGFLEGSNVNIAEEMVNMITAQRAYETNSKSIQSTDEM 256 Query: 472 LQTLLEGV 479 + Sbjct: 257 MSIANNLK 264 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 51/238 (21%), Gaps = 20/238 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + + N + + N+ NA+ Y Sbjct: 1 MFRSLWTGASGMNAQQKNMDVVSNNLANANTTGYKNSRAEFQDLIYATLERPDGPDDLGD 60 Query: 50 ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEMMSADDHYNN-SPTHYI 104 T + + L S+ Q+ + + Sbjct: 61 DGRSTPAGIQIGHGAKNSATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRD 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISN 162 + E + + +E T V D D+ E+EI++ Sbjct: 121 GSFKIDGEGNLVTSDGLHVQSFDGEIPQEATNVSITEEGRVIATLEDGETDEIGEIEIAS 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ AS + + + + G + + ++ Sbjct: 181 FINPAGLEAQGSNLYSATAASGDASVGLPGENGRGQLQQGFLEGSNVNIAEEMVNMIT 238 >gi|237799216|ref|ZP_04587677.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022071|gb|EGI02128.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. oryzae str. 1_6] Length = 501 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 40/386 (10%), Positives = 93/386 (24%), Gaps = 6/386 (1%) Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + ++ + N + +A T+ + Sbjct: 116 LSDQVNSQLNQGIDSKGNFGSSLYSSINSADAITQRSIGKTTNSGGSGNLNVTIGDASKL 175 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + A D S + + + ++ + Sbjct: 176 TADDYEVTFSDASNFTIRRLPNGESVGAGALSDNPPKQFDGFSVSLNGNNLAAGDSFKLT 235 Query: 220 YTSDGTTLFET--VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 T G + SN N S + A L+ Sbjct: 236 PTRTGASGISVVLTDAKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSNIYSSTQTADLR 295 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + ++ + ++S + G + G + I + Sbjct: 296 NALKDSAPMKLVMGAVSSTGVQTYSLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGY 355 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----G 393 S +F + ++ + ++ + Sbjct: 356 TDTTTTPSSKTAFELQMTISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVSN 415 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 +L N + + S + + V S + GV+L EE S LIK Sbjct: 416 GGVGSSLSGSYANLVSVVGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIK 475 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I + TL+ + Sbjct: 476 YQQYYTASSQIIKAAQTIFSTLINSL 501 >gi|332525064|ref|ZP_08401244.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] gi|332108353|gb|EGJ09577.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] Length = 260 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 2/183 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 R ++ + + F + D + + Q +N + Sbjct: 77 TTRNFSQGNLQQTGNSYDIAIKGNGFFQIQMPDGTTGYTRDGGFQVDNAGQLVTNQGYPV 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G V + ++ +A L N E Sbjct: 137 QPGITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQLANFINPAGLESLGGNLYA--E 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + + + T VN+ EEL +I +++Y +++K I +D+ML Sbjct: 195 TAASGTPNTGTPGTNELGALQQGFVETSNVNVVEELVNMIATQRAYELNSKAIQTSDQML 254 Query: 473 QTL 475 Q L Sbjct: 255 QKL 257 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 13/183 (7%), Positives = 33/183 (18%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLRSLWIAKTGMEGQQTKLDVISNNLANVGTNGFKRGGVQFEDLIYQNLRQAGAASSEQS 60 Query: 45 ISPENVTVVTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +N L ++ F ++ + Sbjct: 61 TLPTGLQVGLGVRAAGTTRNFSQGNLQQTGNSYDIAIKGNGFFQIQ------MPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + A+ +A ++ Sbjct: 115 TRDGGFQVDNAGQLVTNQGYPVQPGITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQ 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|242278484|ref|YP_002990613.1| flagellar basal body rod protein FlgG [Desulfovibrio salexigens DSM 2638] gi|242121378|gb|ACS79074.1| flagellar basal-body rod protein FlgG [Desulfovibrio salexigens DSM 2638] Length = 260 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 3/172 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 P +G + T + S+ + G + Sbjct: 89 TGNPLDIAIEGNGFFLVDRNGEDAYTRSGAFKLDSDGRLVTSNGYPLQPEFTVPAEAVNV 148 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG---WLEKNRSDSHDLHMKSQVV 428 + + + +KN A I + E N++G ++E S + + Sbjct: 149 VVSEDGHIAALDKNGTELSSADITIYDFINEAGLNAVGKNLYVETEASGAAIQGTPGEDN 208 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F +++ Y V L +E+ LI +++Y ++K I +D MLQT + + Sbjct: 209 FGTLAQGYLEGSNVELVDEMVGLIVGQRAYETNSKAITTSDSMLQTAINVKR 260 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 28/153 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + N+ N + + + + Sbjct: 1 MMRSLWTAATGMVAQQTHIDVLSNNLANVNTQGFKKSRVEFEDLMYQTMRIAGSETEGGN 60 Query: 46 -SPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + S +K + + + F D Sbjct: 61 RLPTGMQIGMGVKEVSIHKFFSQGSFESTGNPLDIAIEGNGF-------FLVDRNGEDAY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + L AE V Sbjct: 114 TRSGAFKLDSDGRLVTSNGYPLQPEFTVPAEAV 146 >gi|332296627|ref|YP_004438550.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179730|gb|AEE15419.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 559 Score = 77.0 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 40/402 (9%), Positives = 97/402 (24%), Gaps = 9/402 (2%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL---SEDILGKTVIDNAEEVVQNFNTS 141 + + M A N + T + + + S S + + + V + Sbjct: 157 PIGQSMPAKQSNNITMTGNLDASQYANTSSSTTPYAVTSSGAIYDSLGVSHSVTTVITPT 216 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + ++ + + + + + I Sbjct: 217 GTQNTWKWRTLTTLPSADVPSKTAAAPSGPATATGNITLSFNGYAIQSIVGDNVPYNISI 276 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + G +T + +D V + + + + + + ++ Sbjct: 277 TVQNGDTTSTIEQKVINAINNDQILKNYFVASNNSGSVNLQSKLVDPTGTYGTNWLTITE 336 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPGL 317 N GS + V + + + +F+ + Sbjct: 337 NDGSTGAATGLNNFSYASSDVGTTPVSNVYATSGYGTLTFNSNGSLSNVTTTYPTPSTST 396 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + QY + S ++ + Sbjct: 397 ATLLINPSTGASTPWTPTINFSGMTQYGGSSSLNFASQDGYSSGSLQSYSIDQSGVITGT 456 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 Y + +A L N + S + + I S Sbjct: 457 YSNGLTNAIGQIALANFPNPSGLTSNGSNIYST--SSNSGTAQIGAAGSGGIGTIIPSAL 514 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L ++ + LI E+ Y + ++I +D+MLQ LL Sbjct: 515 EMSNVDLSQQFTNLITTERGYEANARVITTSDQMLQDLLSLK 556 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 40/458 (8%), Positives = 99/458 (21%), Gaps = 24/458 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49 +L + A + N I NI N + + + Sbjct: 1 MLRAMSSAVSGLQNNQTAMDVIGNNIANVNTIGFKASTVTFSQMLSQTLSGASAPQNGLG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + SS+ + ++ + + Sbjct: 61 GINPMQIGLGTQIAAISTPFTSSSTENTGVNTDLAIQGNGFFIVNNGSQNFYTRDGSFNV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 N + + D++ V + S ++ ++ K+ S+ Sbjct: 121 DANGNLVNSAGLKVQGWQADSSGVVNPSGPVSDLKIPIGQSMPAKQSNNITMTGNLDASQ 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + A ++ +I + + T + Sbjct: 181 YANTSSSTTPYAVTSSGAIYDSLGV---SHSVTTVITPTGTQNTWKWRTLTTLPSADVPS 237 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + +T N I +V + + + + V N Sbjct: 238 KTAAAPSGPATATGNITLSFNGYAIQSIVGDNVPYNISITVQNGDTTSTIEQKVINAINN 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + S + + P + + T N Y S+ Sbjct: 298 DQILKNYFVASNNSGSVNLQSKLVDPTGTYGTNWLTITENDGSTGAATGLNNFSYASSDV 357 Query: 350 FLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +V + N + + +P G +T T Sbjct: 358 GTTPVSNVYATSGYGTLTFNSNGSLSNVTTTYPTPSTSTATLLINPSTGASTPWTPTINF 417 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + + S + + GV Sbjct: 418 SGMTQYGGSSSLNFASQDGYSS---GSLQSYSIDQSGV 452 >gi|189426344|ref|YP_001953521.1| hypothetical protein Glov_3295 [Geobacter lovleyi SZ] gi|189422603|gb|ACD97001.1| protein of unknown function DUF1078 domain protein [Geobacter lovleyi SZ] Length = 296 Score = 76.6 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 8/183 (4%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + S +P + + + D + + D Sbjct: 122 SNNRSLINPDGYVALDENRQPVVFVSTYTDTSGNVLDFQKVAGVDAQGRLQLLYADNNGN 181 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S K + + P I +P TL + N++G Sbjct: 182 SSKVYYAGNGVVPVPTTTGAI--GLGTARIPNPPGLEKVGSTLFKSTGNAVGGSGTP--- 236 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +S I + V++ E+ +I +++Y+ ++K I D+M Q +L Sbjct: 237 ---IVTRSNGTNEKILSNNLELSNVDMATEMVKMILTQRAYSANSKTITTADEMTQEVLN 293 Query: 478 GVK 480 + Sbjct: 294 LKR 296 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 40/161 (24%), Gaps = 12/161 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52 MS+ + ++ I N+ N++ + + + + + Sbjct: 1 MSITGAMFTGVSGLLANAEGLNVIGNNLSNSNTIGFKGGRMLFSDLLSAPIGNNSQVGRG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLR 108 V + + L + + F + +A + + + Sbjct: 61 VQIQKVDNLFSQGSLESTTVVTDLAIQGDKFFSFAVPGTTAAAAIAVTDAYYSRAGALRI 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 DS N + V +TS + + Sbjct: 121 DSNNRSLINPDGYVALDENRQPVVFVSTYTDTSGNVLDFQK 161 >gi|121534936|ref|ZP_01666755.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] gi|121306535|gb|EAX47458.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] Length = 262 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 61/254 (24%), Gaps = 4/254 (1%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V + N + +++ + + + + + Sbjct: 11 GMVAQQANVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADTQLPTGIQIGH 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++A I + + I D L + Q R Sbjct: 71 GVRQVATQKIYTQGNFQQTGNPLDLAIEGDGFFQITLPDGTLAYTRDGAFKKDAQGRIVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARN 406 S + L + + L RN Sbjct: 131 SEGYPLEPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQIQIVRFINPAGLDSIGRN 190 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + E S + + + + Y V + EE+ +I +++Y I+ K I Sbjct: 191 LL--KETAASGAPVVLNPGTDGAGTLVQQYLEMSNVQVVEEMVNMIVAQRAYEINAKAIT 248 Query: 467 FTDKMLQTLLEGVK 480 D ML + + Sbjct: 249 TADDMLGQVANLKR 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/239 (7%), Positives = 49/239 (20%), Gaps = 31/239 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + I N+ N + + + T Sbjct: 1 MMRALWTAGSGMVAQQANVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADT 60 Query: 46 -SPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + R + + F + Sbjct: 61 QLPTGIQIGHGVRQVATQKIYTQGNFQQTGNPLDLAIEGDGFFQI------TLPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + L +I + E ++ ++ D Sbjct: 115 TRDGAFKKDAQGRIVTSEGYPLEPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQIQ 174 Query: 159 EISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + N + + + D L+Q+ E+ + + N Sbjct: 175 IVRFINPAGLDSIGRNLLKETAASGAPVVLNPGTDGAGTLVQQYLEMSNVQVVEEMVNM 233 >gi|229109210|ref|ZP_04238809.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15] gi|228674220|gb|EEL29465.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15] Length = 406 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 5/195 (2%) Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q + D + ++ P + + + +P Sbjct: 217 VQMRNDSKKEGFKDVEGAGGNMTFDAVGNPSPKEQAANIPFNGGNIKLDLSNLTNHPT-- 274 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + G +A ++ Y D K VA L++ Sbjct: 275 -DKTLSVTGVDGRAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGN 333 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + N + L Q + S V+L E L+ ++ + + K+I Sbjct: 334 G--NYTATNTTGILALGASGQNGAGKVRGSAQEGANVDLSVEFVDLMLYQRGFQGNAKVI 391 Query: 466 MFTDKMLQTLLEGVK 480 +D++L ++ ++ Sbjct: 392 KVSDEVLNEVVNLIR 406 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 23/293 (7%), Positives = 60/293 (20%), Gaps = 30/293 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKLSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + + Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKG 172 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 ++ ++ I + + ++ S + + + V Sbjct: 173 VVGGNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEGFKDVE 232 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + G F+ V E+ + + + + + + G Sbjct: 233 GAGGNMTFDAVGNPSPKEQAANIPFNGGNIKLDLSNLTNHPTDKTLSVTGVDG 285 >gi|42780846|ref|NP_978093.1| flagellar hook protein FlgE [Bacillus cereus ATCC 10987] gi|42736766|gb|AAS40701.1| flagellar hook protein FlgE, putative [Bacillus cereus ATCC 10987] Length = 407 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 30/338 (8%), Positives = 74/338 (21%), Gaps = 11/338 (3%) Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + T ++ IS I+ Sbjct: 72 MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268 + + M S ++ + G Sbjct: 132 GQYVFAYPADPSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191 Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +R D +F+E + G + Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNESKKETAFNEVNGAGGEVKFDAVGKPDPVN 251 Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + + + + +A ++ Y D Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 K VA L++ + N + + + Q + S V Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/282 (8%), Positives = 58/282 (20%), Gaps = 38/282 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + D N Sbjct: 61 TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + D + V + +Q A I Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-SGIPGPLQVPMGSAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + + + + + + + Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNESKKETAFN 230 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 +G ++ F+ + + I +G V + Sbjct: 231 EVNG------AGGEVKFDAVGKPDPVNPEANIPFNGGTVKID 266 >gi|253990125|ref|YP_003041481.1| flagellar basal-body rod protein flgg [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781575|emb|CAQ84738.1| flagellar basal-body rod protein flgg (distal rod protein) [Photorhabdus asymbiotica] Length = 260 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 F + D + + S N Q + FL ++ + + Sbjct: 102 FFQVQLPDGSSAYTRDGSFQEDQNGQLVTANGFLVFPTITIPDNATDIAISSDGVVSVKV 161 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 S + + L N ++E + S + + Y Sbjct: 162 QGQSAPQQVGQFTLTTFINENGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYL 219 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 T VN+ EEL +I+ +++Y +++K + +D+MLQ L + Sbjct: 220 ETSNVNIAEELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 11/155 (7%), Positives = 32/155 (20%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L ++ + F ++ + Sbjct: 61 RLPSGLQIGTGVRPVATERIHSQ---GNLSGTNNNHHVAIRGKGFFQVQ------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 S ++ + ++ T+ Sbjct: 112 SAYTRDGSFQEDQNGQLVTANGFLVFPTITIPDNA 146 >gi|94987183|ref|YP_595116.1| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1-00] gi|94731432|emb|CAJ54795.1| Flagellar basal body L-ring protein [Lawsonia intracellularis PHE/MN1-00] Length = 261 Score = 76.6 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 67/252 (26%), Gaps = 2/252 (0%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V + +N + +++ + ++ + R V Sbjct: 11 GMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDNRIPVGIQVGM 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A + + + + D + Sbjct: 71 GVRPTAVHKFFTQGDFQNTGNPLDMAIEGEGFFQVLVGDQLMYTRAGAFKLNQDGTLVTA 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + ++ + + P+ L RN Sbjct: 131 NGYPLQPEFTVPPDAKSVAISERGRITALDANGQEIAAGEIPLYSFVNPAGLDAKGRNL- 189 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++ S + + I++ + V + +E+ +I +++Y +++K I + Sbjct: 190 -YIPTEASGEAVEGVPGEENLGTIAQGFLEMSNVEVVDEMVQMIVGQRAYEMNSKAIQTS 248 Query: 469 DKMLQTLLEGVK 480 D MLQT ++ + Sbjct: 249 DNMLQTAVQLKR 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 16/199 (8%), Positives = 40/199 (20%), Gaps = 30/199 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A I N+ N + + + Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDN 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + + F + + Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFTQGDFQNTGNPLDMAIEGEGFFQVL-------VGDQLMY 113 Query: 102 HYISKLRDSLESYSKNLSEDILG--KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + L TV +A+ V + + + Sbjct: 114 TRAGAFKLNQDGTLVTANGYPLQPEFTVPPDAKSVAISERGRITALDANGQEIAAGEIPL 173 Query: 160 ISNLRRFLSELTVVNDAIK 178 S + + N I Sbjct: 174 YSFVNPAGLDAKGRNLYIP 192 >gi|304310887|ref|YP_003810485.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] gi|301796620|emb|CBL44832.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] Length = 261 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G+ Q+ + + + + A + + F + D Sbjct: 51 QPGGQSSQDTQLPSGLQVGTGVKTVATKKQHTEGTIQTTGQALDVAIMGRGFFQVLMPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + + + + +V Sbjct: 111 AIAYTRDGAFQLSAEGDLVTAEGLSLEPAINVPEGSQSVTIGNDGTVTAVDGQTKQQIEI 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A L N + E S + + ++ VN+ E Sbjct: 171 GNIQLADFVNPAGLESVGSNL--YRETVASGAPTEAQPGTDGTGTLQQNALEASNVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 EL +I+ +++Y +++K+I D+ML Sbjct: 229 ELVNMIETQRAYEMNSKVISTVDQML 254 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 45/189 (23%), Gaps = 32/189 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + A +++ + + ++I N+ N + R + V Sbjct: 1 MNAALWISKSGLSAQDLRLSTISNNLANVSTTGFKRDIAVFQDLLYQVQRQPGGQSSQDT 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + + A+ + + F + Sbjct: 61 QLPSGLQVGTGVKTVATKKQHTEGTIQTTGQALDVAIMGRGFFQVL------MPDGAIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S E L + A V + + D + + +I Sbjct: 115 TRDGAFQLSAEGDLVTAEGLSL-----EPAINVPEGSQSVTIGNDGTVTAVDGQTKQQIE 169 Query: 162 NLRRFLSEL 170 L++ Sbjct: 170 IGNIQLADF 178 >gi|301051131|ref|ZP_07197962.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300297215|gb|EFJ53600.1| conserved hypothetical protein [Escherichia coli MS 185-1] Length = 113 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 33/106 (31%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + + + + + + + + V + Sbjct: 7 AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQL 66 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S + GVNL EE L + +Q Y + +++ + + L+ Sbjct: 67 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 112 >gi|187932866|ref|YP_001885049.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] gi|187721019|gb|ACD22240.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] Length = 366 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 85/277 (30%), Gaps = 21/277 (7%) Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 G T + + S L +I + + ++T+ E N + DG V Sbjct: 111 YAGDKTGTGADTKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYL 170 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 GK +D P + ++ + D ++ I Sbjct: 171 LKDGDDGKPSVAWGEKDGDAP-------------VANYVDADSKNLHAVGEGAQLNTLKI 217 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + SF V L + A + + + Sbjct: 218 PDKVLAPKRDPDGKPTAEFVEVPVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEG 277 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 I + + N E + +G L + SD + F + + V+ Sbjct: 278 LTSIGGNLLQTSPNSGP-EIIKTPVGKLATDFSD-------NSKGFGEFVQGALESSNVD 329 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L E+ + +I +++ S+K+I D++LQT+ ++ Sbjct: 330 LTEQFTDMITATRAFQASSKMITTGDEILQTITGLMR 366 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 10/44 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L + + I NI N + + Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDM 44 >gi|217959237|ref|YP_002337785.1| flagellar hook protein FlgE [Bacillus cereus AH187] gi|229138454|ref|ZP_04267043.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26] gi|217065278|gb|ACJ79528.1| flagellar hook protein [Bacillus cereus AH187] gi|228644991|gb|EEL01234.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26] Length = 407 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 32/338 (9%), Positives = 75/338 (22%), Gaps = 11/338 (3%) Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + T ++ IS I+ Sbjct: 72 MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131 Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268 S + + M S ++ + G Sbjct: 132 GQYVFAYPADSSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191 Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 +R D +F+E D G + Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251 Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + + + + +A ++ Y D Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 K VA L++ + N + + + Q + S V Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L E L+ ++ + + K+I +D++L ++ ++ Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/282 (9%), Positives = 59/282 (20%), Gaps = 38/282 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + D N Sbjct: 61 TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + D++ V + +Q A I Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADSSTGNVDL-SGIPGPLQVPMGSAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + + + + + + + Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNDSKKETAFN 230 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 DG ++ F+ + + I +G V + Sbjct: 231 EVDG------AGGEVKFDAVGKPNPVNPEANIPFNGGTVKID 266 >gi|327480022|gb|AEA83332.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 76.6 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + ++ + + F + D + S + + Q ++ Sbjct: 74 ITGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLSSDGQLVTSNG 133 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + V + + + A L N Sbjct: 134 YALEPAIVVPPETQTFTVGEDGTVSVTTVGNPQPQIIGNIQTADFINPAGLQAMGSNL-- 191 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +LE S + + + ++ V++ EEL +I +++Y +++K+I D Sbjct: 192 FLETAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTAD 251 Query: 470 KML 472 +ML Sbjct: 252 QML 254 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 13/185 (7%), Positives = 31/185 (16%), Gaps = 33/185 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L ++ + +I N+ N + R Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + L + + F + Sbjct: 61 ELPSGLQLGTGVRITGTQKI---FTTGSLQTTEQPLDMAINGRGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S + + L ++ E + +I Sbjct: 112 VSYTRDGSFHLSSDGQLVTSNGYALEPAIVVPPETQTFTVGEDGTVSVTTVGNPQPQIIG 171 Query: 159 EISNL 163 I Sbjct: 172 NIQTA 176 >gi|302343757|ref|YP_003808286.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] gi|301640370|gb|ADK85692.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] Length = 260 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I S + + I+ + + N + + + + Sbjct: 80 IWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFKLNNNRDIVDSNGNLLVPQM 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + D + L+ RN + E S Sbjct: 140 TVPENATSVVIDPNGLVTALTADDEAVELGRIQLYTFPNPSGLMAIGRNY--FRESPASG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 F +++ + V++ +E+ +I +++Y ++K I +D+MLQT + Sbjct: 198 VAVPGDPGADQFGTLAQGFLEMSNVSVVDEMVNMIVAQRAYEANSKSITTSDQMLQTANQ 257 Query: 478 GVK 480 + Sbjct: 258 VKR 260 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 47/231 (20%), Gaps = 17/231 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 ++ A I N+ N + + + + Sbjct: 1 MMRSLYTAATGMTAQQLNLDVISNNLANVNTTGFKKSRADFEDLMYQTLRQPGAQQAGGQ 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + Q Q + N + Sbjct: 61 MIPTGKQVGMGVRPVAIQKIWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFK 120 Query: 109 DSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + ++L TV +NA VV + N + + + Sbjct: 121 LNNNRDIVDSNGNLLVPQMTVPENATSVVIDPNGLVTALTADDEAVELGRIQLYTFPNPS 180 Query: 167 LSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 N + DQ L Q E+ +S + N Sbjct: 181 GLMAIGRNYFRESPASGVAVPGDPGADQFGTLAQGFLEMSNVSVVDEMVNM 231 >gi|255026116|ref|ZP_05298102.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J2-003] Length = 198 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 58/197 (29%), Gaps = 13/197 (6%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51 L+ FN + + + A +NI N + Y+R+ T + V Sbjct: 3 LSDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVK 62 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V + + + + N P+ + + Sbjct: 63 VTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAW 121 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +KN + ++ + N ++++ + + I +L + +L Sbjct: 122 AALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLG 181 Query: 172 VVNDAIKFKTASKHDAH 188 +N AI ++ + Sbjct: 182 SINKAIGNAGSTHRTIY 198 >gi|171320708|ref|ZP_02909721.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171094035|gb|EDT39133.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 388 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/274 (8%), Positives = 68/274 (24%), Gaps = 9/274 (3%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 R + + TL + + V ++ + S + Sbjct: 116 VTERTSGLKLATLDATGTLAPISLAQRQLDPPCATRVVRFTDNLSPGSTDFSVSDVEIYD 175 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 K +L++ + ++ + +P L + Sbjct: 176 ANGAKHVLKVSFAQDTGVMPGRWKVTVADRDGTPLQIGTLQFHGGIPEPGQDRIDVTLPS 235 Query: 329 KLCQGISETICVNPQY--RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + + + N+ G L Y + + Sbjct: 236 SQLTVTLDFSEGVTAFSAGATSTLRMSKQDGYAAGMLASMNIDGDGQLALRYSNGQIGHA 295 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH--DLHMKSQVVFNHISESYSNTVGVNL 444 +A L+ + S + + V+L Sbjct: 296 GAVALARFADPQRLVRLGAGLF-----DASHLPPPRYAKSGDPLVGQLRSGAVEASNVDL 350 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E LI +++ + ++++I +++M+ L + Sbjct: 351 SGEFGQLILIQRGFQAASQVISTSNEMIMQLFQM 384 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 23/291 (7%), Positives = 60/291 (20%), Gaps = 28/291 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52 +L + S+ +I N+ N + + + + Sbjct: 1 MLDSIYIGMSGLAAYSKGLQTIGDNVANLNTPGFKSSAPRFQDLCDGRPTAREGKRSGSG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V N L + + AL++ + + + + Sbjct: 61 VAYAHATLNFRQGELRGSTGQLDLAIDGDGLLALRD-------GDTIRYARTGQFHIADD 113 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + L +D + R + T Sbjct: 114 GFVTERTS-GLKLATLDATGTLAPISLA-------QRQLDPPCATRVVRFTDNLSPGSTD 165 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT---SDGTTLFE 229 + + + H + ++ R+ + + T G Sbjct: 166 FSVSDVEIYDANGAKHVLKVSFAQDTGVMPGRWKVTVADRDGTPLQIGTLQFHGGIPEPG 225 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 D+ S + +S + G +L + Sbjct: 226 QDRIDVTLPSSQLTVTLDFSEGVTAFSAGATSTLRMSKQDGYAAGMLASMN 276 >gi|284007173|emb|CBA72457.1| flagellar basal-body rod protein FlgG [Arsenophonus nasoniae] Length = 260 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 3/212 (1%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDL 326 G + + + S + + + L + + F + D Sbjct: 51 QPGSLTSEQTLSPSGLQLGTGVRPIATQRLHSQGNLSQTNGSTDVAIKGQGFFHIQLPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + + N Q + F V + V + +S + Sbjct: 111 TDAYTRDGAFQVDQNNQRVTAGGFAVVPPIVLPETALKVTISHDGIVSVVIPGNSEPQQV 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N +LE N S + + Y T VN+ E Sbjct: 171 GQLALTTFVNETGLESIGENL--YLETNSSGVPVETAPGVNGAGLLYQGYVETSNVNVAE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EL +I+ +++Y I++K + +D+MLQ L++ Sbjct: 229 ELVSMIQTQRAYEINSKAVSTSDQMLQRLMQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 9/145 (6%), Positives = 25/145 (17%), Gaps = 23/145 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGSLTSEQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHY 103 SP + + T + Q + Sbjct: 61 LSPSGLQLGTGVRP----IATQRLHSQGNLSQTNGSTDVAIKGQGFFHIQLPDGTDAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVI 128 + + + ++ Sbjct: 117 DGAFQVDQNNQRVTAGGFAVVPPIV 141 >gi|83647171|ref|YP_435606.1| flagellar basal body rod protein FlgG [Hahella chejuensis KCTC 2396] gi|83635214|gb|ABC31181.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 261 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 49/185 (26%), Gaps = 2/185 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V E + F + D + + + + F Sbjct: 77 TQKVFSEGNLEVTEQPLDIAINGRGFFQILMPDGTISYTRDGQFHLNSDGDVVTANGFPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + G ++ + + L N + E Sbjct: 137 EPGITVPDGALHLTISTDGVVSVTVAGTATPTQVGNINTVDFINPAGLEAIGNNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + T V + EE+ +I +++Y ++ K++ D+ML Sbjct: 195 TAASGDPQEGTPGLAGLGTVEQGMVETSNVEIVEEMVNMITTQRAYEMNAKVVTTADQML 254 Query: 473 QTLLE 477 Q + + Sbjct: 255 QYITQ 259 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/246 (6%), Positives = 48/246 (19%), Gaps = 37/246 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ +I N+ N + + R + Sbjct: 1 MHGALWVSKTGLAAQDTALKTISNNLANVNTTGFKRDRAVFQDLLYQIKRQPGGQSSQDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + L + + F + Sbjct: 61 QLPSGLQLGTGVRVVGTQKV---FSEGNLEVTEQPLDIAINGRGFFQIL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155 + + + + L + + + + V Sbjct: 112 ISYTRDGQFHLNSDGDVVTANGFPLEPGITVPDGALHLTISTDGVVSVTVAGTATPTQVG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + + + N+ + AS + + + + + Sbjct: 172 NINTVDFINP-AGLEAIGNNLFRETAASGDPQEGTPGLAGLGTVEQGMVETSNVEIVEEM 230 Query: 216 DMVVYT 221 ++ T Sbjct: 231 VNMITT 236 >gi|292669970|ref|ZP_06603396.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] gi|292648382|gb|EFF66354.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] Length = 275 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 60/194 (30%), Gaps = 3/194 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + +DE+A I + + + G + ++ Sbjct: 84 SAVDEIATDHIQGALQTTGNTYDFGISGEGYFVVNTPQGPRYTRDGTWKLDSDRRMVTTD 143 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 L DG ++ + + ++G + + + +A L +N Sbjct: 144 GYLLADGITIGENAPSDSITISGDGRVSYREAGQTQQQEAGQITLARFVNPAGLTAIGKN 203 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 ++ + S +++ V + EE+ +I +++Y ++K I Sbjct: 204 L--FVVSDASGEAIESNPGVDGAGTLTQGTLEMSNVQIVEEMVNMIVSQRAYESNSKAIT 261 Query: 467 FTDKMLQTLLEGVK 480 +D ML+ + Sbjct: 262 TSDSMLEIANTLKR 275 Score = 40.8 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 44/203 (21%), Gaps = 16/203 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ I N+ NA Y R D E + M Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANAATTGYKRDDMAI-------------REFEPM 47 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + ++ +S+ + + A + ++ + + + Sbjct: 48 LLRRINDYSADADVTSFKGF---RVDGLGAPRVGRLGLGSAVDEIATDHIQGALQTTGNT 104 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + VV + N T Sbjct: 105 YDFGISGEGYFVVNTPQGPRYTRDGTWKLDSDRRMVTTDGYLLADGITIGENAPSDSITI 164 Query: 183 SKHDAHDFLDQRDVLLQKISEII 205 S + + Q+ +I Sbjct: 165 SGDGRVSYREAGQTQQQEAGQIT 187 >gi|261344140|ref|ZP_05971784.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] gi|282567732|gb|EFB73267.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] Length = 260 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 63/187 (33%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ K + F+ + D + + + + Q ++ + Sbjct: 76 ATMRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ + Y D+ + + + L N ++ Sbjct: 136 VVPAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + T VN+ EEL +I+ +++Y I++K + +D+M Sbjct: 194 ETASSGAPKESAPGTNGAGLLYQGMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44 >gi|224825166|ref|ZP_03698272.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602837|gb|EEG09014.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 260 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 58/215 (26%), Gaps = 2/215 (0%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 P ++ + + + + AR+ E + F Sbjct: 48 TLRQPGSQLTNGNSLPTGLQVGTGSTVVATARIHSQGNLESTEQPLDLAINGDGFFRVQQ 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + N ++ +L D + + Sbjct: 108 PDGTIAYTRNGEFRRNENGDIVNSSGYLLDPAINIPANATGITISEAGVVQYTQPNSTAP 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + L +N +L+ S + + + VN Sbjct: 168 TTAGTIQLTTFINPQGLQSIGQNL--YLQTQASGDPQDGDPNTDGRGSVRSGFLEDSNVN 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + EEL +I ++S+ ++++ I D+MLQ + + Sbjct: 226 VTEELVNMITAQRSFEMNSRAIKTADEMLQRIAQL 260 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/244 (9%), Positives = 56/244 (22%), Gaps = 37/244 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ +++ Q + N+ N++ K + + + Sbjct: 1 MMRALYIAKTGMDSSQFQLDVVSNNLANSNTKGFKKGHAVFEDLYYQTLRQPGSQLTNGN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 TVV + L + + F +++ Sbjct: 61 SLPTGLQVGTGSTVVATARIHSQ---GNLESTEQPLDLAINGDGFFRVQQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + R + N S +L + A + + Sbjct: 112 IAYTRNGEFRRNENGDIVNSSGYLLDPAINIPANATGITISEAGVVQYTQPNSTAPTTAG 171 Query: 159 EI---SNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 I + + + N + + D D R + E ++ Sbjct: 172 TIQLTTFINPQGLQSIGQNLYLQTQASGDPQDGDPNTDGRGSVRSGFLEDSNVNVTEELV 231 Query: 215 NDMV 218 N + Sbjct: 232 NMIT 235 >gi|222053732|ref|YP_002536094.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] gi|221563021|gb|ACM18993.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] Length = 262 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 63/252 (25%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + + + + ++ + + Sbjct: 11 GMQAQQLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNATQIPTGIQVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 A I + + I+ D + + Q R Sbjct: 71 GSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQMPDGSTEYTRAGAFKKDSQGRVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S G ++ + + ++ Sbjct: 131 SEGYPLLPEVVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQLATFSNPAGLSSQGHN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + E S + Q +S+ Y V++ EE+ +I +++Y I++K + Sbjct: 191 LFKETESSGAATTGTSGQNGIGTLSQGYLEMSNVSVAEEMVNMIVGQRAYEINSKAVQAA 250 Query: 469 DKMLQTLLEGVK 480 D+MLQT + Sbjct: 251 DEMLQTANNLKR 262 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/240 (6%), Positives = 55/240 (22%), Gaps = 29/240 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + + N+ N + + + T Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNAT 60 Query: 45 ISPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V + K + + + F ++ ++ Sbjct: 61 QIPTGIQVGLGSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQ------MPDGSTEY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + L V+ +N + + + +Q + ++ Sbjct: 115 TRAGAFKKDSQGRVVTSEGYPLLPEVVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + ++ K +S Q + + + V ++ Sbjct: 175 LATFSNPAGLSSQGHNLFKETESSGAATTGTSGQNGIGTLSQGYLEMSNVSVAEEMVNMI 234 >gi|297182936|gb|ADI19085.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0070_15B21] Length = 262 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 2/192 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++ E + F + + I + +N Sbjct: 73 KFIGTEKIHTQGNLENTGNDLDLSIDGHGFFQILQPNGIVGYSRDGHFNIDGMGRLVTND 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L D + ++ + ++ + +A L +N Sbjct: 133 GMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSIQLARFQNPAGLTPLGKNL- 191 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++ S + + +++ + V+L EE+ +I +++Y +++K I Sbjct: 192 -YVSTPASGNAIVDAPGASSMGTLTQGFLERSNVSLVEEMVNMITSQRAYEVNSKAIQSA 250 Query: 469 DKMLQTLLEGVK 480 D+ML+ V+ Sbjct: 251 DEMLKNTNNLVR 262 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 4/44 (9%), Positives = 11/44 (25%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A + + N+ N + Y + Sbjct: 1 MMRALYTAATGMAAQQRNIDTTANNLANVNTTGYKKSKVHFQDL 44 >gi|183220919|ref|YP_001838915.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911015|ref|YP_001962570.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775691|gb|ABZ93992.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779341|gb|ABZ97639.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 265 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 3/170 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 F + G + SN L + + + N ++ Sbjct: 98 TGEMAFFKIQMPDGTFSYSRDGSFKIDSNQQVVTSNGYLLEPPIILPENAILNTLMVSEE 157 Query: 372 PDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ + + L +N + E S M SQ + Sbjct: 158 GEVTVKIGNDIRPTTIGQLELYRFVNPAGLQAVGKNL--FRETVASGQEIPGMPSQEGYG 215 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + V + EE+ +I +++Y ++K I +D ML T + + Sbjct: 216 SVLQGFLEMSNVKIVEEMVNMIVAQRAYESNSKTIQTSDNMLSTAIGLKR 265 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 10/156 (6%), Positives = 29/156 (18%), Gaps = 26/156 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ ++ N+ N + + + Sbjct: 1 MMRSLWTGATGMIAQQFHIDTVANNLANVNTTGFKKNRVDFEDLVYQHQVLAGTPATSVS 60 Query: 47 --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V + K A + + + +M Sbjct: 61 EIPTGVNVGHGVKVAATQKLFEIGSFQATGNKLDLALTGEMAFFKIQM-----PDGTFSY 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + +L +I ++ Sbjct: 116 SRDGSFKIDSNQQVVTSNGYLLEPPIILPENAILNT 151 >gi|23015641|ref|ZP_00055411.1| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 804 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 40/404 (9%), Positives = 92/404 (22%), Gaps = 9/404 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54 MSL + + S +I NI N + Y + + Sbjct: 1 MSLYGALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTSYSPGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL 111 +S+ + D L A + + Q + N + Sbjct: 61 VQSKPRAAIDSQGLLQATTESTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDK 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 E Y +N+S + + T A K+ + + + + Sbjct: 121 EGYLQNVSGFYVQGWPLQPTNNNTLAKPTELTIDGNTYMKAYKQSDGTFHYVNQNIINPQ 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 D + L + ST + V D Sbjct: 181 ETKSLNLKTIGGTADQTTQIKMGANLPSGDTIYNPGSTSSSGYHQTSVLIYDSLGDTHNF 240 Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 + N + ++SN ++ + + S V Sbjct: 241 NVNWTKTNSNQWDAETKSNFFSVNTTLTNVKTNSTAALTIKGEATGNTTGGVKTLVAANS 300 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 S + P+ ++ A + + N + + Y S+ Sbjct: 301 TAMGYFASSGAIAMPVNTLGASLAASRQALPLGSVLNISGASGTASTNNGDWYVSSQVAT 360 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + ++ + + + ++ + A + Sbjct: 361 TPAITDQAATSATIEIGGTTTSITGTFTAAGSQIDLGVTPASLG 404 >gi|103488389|ref|YP_617950.1| flagellar basal body rod protein FlgG [Sphingopyxis alaskensis RB2256] gi|98978466|gb|ABF54617.1| Flagellar basal-body rod FlgG [Sphingopyxis alaskensis RB2256] Length = 261 Score = 76.2 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 3/229 (1%) Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + D + + + + + R + + I + Sbjct: 28 ANVNTTGFKRDRASFETLSYQLMTQAGAPSTAENRYATGLNLGTGVALNGTARIDTQGTF 87 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + ++ D ++ + P + + Sbjct: 88 QTTGNGLDVAIDGAGYFQVELPDGRIGYTRAGNFGRAPDGTIVTPDGKPLTPAIQIPEDA 147 Query: 365 VKNLAG-YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 G + D +A + L N + +E S + + Sbjct: 148 GNVSIGLDGTVSATAADGTALELGRIEIARFSNPAGLQAIGGNML--VETQASGAPLVGG 205 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + VN+ EEL +I+ +++Y +++K+I TD+M+ Sbjct: 206 AGEEGRGTLRGGMLEGSNVNVVEELVDMIETQRAYEVNSKMISATDEMM 254 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 11/147 (7%), Positives = 27/147 (18%), Gaps = 34/147 (23%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MSL + A+ + S + I N+ N + + R Sbjct: 1 MSL-GALHVARTGLDAQSFRMQVIANNLANVNTTGFKRDRASFETLSYQLMTQAGAPSTA 59 Query: 46 ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 V + + + + + ++ Sbjct: 60 ENRYATGLNLGTGVALNGTARID---TQGTFQTTGNGLDVAIDGAGYFQVE------LPD 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDIL 123 + + L Sbjct: 111 GRIGYTRAGNFGRAPDGTIVTPDGKPL 137 >gi|170758711|ref|YP_001787975.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch Maree] gi|169405700|gb|ACA54111.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch Maree] Length = 345 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 27/334 (8%), Positives = 81/334 (24%), Gaps = 19/334 (5%) Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + I+N + + + +++ + ++ I Sbjct: 22 VGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTKFT 81 Query: 216 DMVVYTSD---GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + T+ + + + S T + + + Sbjct: 82 TGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEATGDVQAGSIDGKSSTMDISFTR 141 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D + + M + + F+ K L Sbjct: 142 DGSFTLDDEGNLLTSDGFRIMGYAMTDGSGTSLAYDAGTGEAKMAFVDADSKALKAADDS 201 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + + +R ++ L+ + + +A Sbjct: 202 KKLIPLRIPDEIDVDGKKVRVQS----------FSIDKDGLLVASLVNGKSAALGQVAMA 251 Query: 393 GINTNVTLLEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQE 446 L + +N + ++ + + V+L E Sbjct: 252 SFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAE 311 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +I +++ K+I D++LQ L+ + Sbjct: 312 EFTEMIVANRAFQACGKMITTGDEILQELVNLKR 345 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 9/166 (5%), Positives = 29/166 (17%), Gaps = 28/166 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + + F + + Sbjct: 61 GTNPRQVGLGVQVAGI---YTKFTTGNMQTTGRNLDMAVDGPGFFIV--GKGDITSQTSI 115 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 T ++ + + + ++ + + Sbjct: 116 ITEATGDVQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRI 161 >gi|148380612|ref|YP_001255153.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 3502] gi|153934204|ref|YP_001384898.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 19397] gi|153936013|ref|YP_001388367.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall] gi|148290096|emb|CAL84215.1| flagellar hook protein [Clostridium botulinum A str. ATCC 3502] gi|152930248|gb|ABS35748.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 19397] gi|152931927|gb|ABS37426.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall] Length = 345 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/326 (10%), Positives = 81/326 (24%), Gaps = 21/326 (6%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + F Q +S+ + +T N G + Sbjct: 20 DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIFTK 79 Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF-QNQ 289 T + + FI G ++Q S + +G A D + Sbjct: 80 FTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEGTDDAQAGSIDGKSSTMDISF 139 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + L + D + + + + Sbjct: 140 TRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGTGEAKMAFVDADSKALKAAD 199 Query: 350 FLRD---------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + KK ++ L+ + + +A L Sbjct: 200 DSKKLIPLRIPDEIEVEGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGL 259 Query: 401 LEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + +N + ++ + + V+L EE + +I Sbjct: 260 EKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAEEFTEMIVA 319 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ K+I D++LQ L+ + Sbjct: 320 NRAFQACGKMITTGDEILQELVNLKR 345 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 14/209 (6%), Positives = 36/209 (17%), Gaps = 46/209 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE--------------- 84 V V + + F Sbjct: 61 GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIIT 117 Query: 85 -----ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 A + + E + + + ++ Sbjct: 118 EGTDDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYD 177 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLS 168 E + DAD + + ++ + Sbjct: 178 AGTGEAKMAFVDADSKALKAADDSKKLIP 206 >gi|229160717|ref|ZP_04288709.1| Flagellar hook protein flgE [Bacillus cereus R309803] gi|228622732|gb|EEK79566.1| Flagellar hook protein flgE [Bacillus cereus R309803] Length = 407 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/325 (8%), Positives = 73/325 (22%), Gaps = 11/325 (3%) Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 T V ++ IS I+ Sbjct: 85 TLTGGKTQVAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTEGQYVFAYPADPST 144 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVPKGKIKALLQIRDS 281 + + M S ++ + G +R Sbjct: 145 GNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNIPADAKHITQELPVYDDAGNTWTMRME 204 Query: 282 VVPIFQNQLDEMARVLIGSFSE------KDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 ++ ++ S E + + G + + Sbjct: 205 FTQDGEHNYKYTVKMRNDSKKETEFHEVQGAAGNVKFDAVGKPDPINPEANIPFNGGTVK 264 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + + +A ++ Y D K V Sbjct: 265 IDLSKLTNHPTEKTIAVTNVDGRPAATVKDCFMADGGYVMVKYSDGSMKAAGQLAVGMFP 324 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L++ + N + L + Q + V+L E L+ + Sbjct: 325 NEGGLMKTGNG--NFTATNTTGILALGVSGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQ 382 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + + K+I +D++L ++ ++ Sbjct: 383 RGFQGNAKVIKISDEVLNEVVNLIR 407 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/386 (8%), Positives = 74/386 (19%), Gaps = 38/386 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + + N + NI NA Y ++ M Sbjct: 1 MIKALYTSISGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSVGAKGDERYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + D N Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQVAMEGNGFFVV-----GDSKAGNME 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + D + V + +Q A I Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-SGIPGPLQIPMGSAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + + + + + + + Sbjct: 172 GIVGGNIPADAKHITQELPVYDDAGNTWTMRMEFTQ-DGEHNYKYTVKMRNDSKKETEFH 230 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 G ++ F+ + + I +G V + K + Sbjct: 231 EVQG------AAGNVKFDAVGKPDPINPEANIPFNGGTVKIDLSKLTNHPTEKTIAVTNV 284 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 P + MA D + + + + + Sbjct: 285 DGRPAATVKDCFMADGGYVMVKYSDGSMKAAGQLAVGMFPNEGGLMKTGNGNFTATNTTG 344 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + NV Sbjct: 345 ILALGVSGQNGAGKVRGGAQEGANVD 370 >gi|58426792|gb|AAW75829.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae KACC10331] Length = 341 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 87/314 (27%), Gaps = 13/314 (4%) Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + + S D L R +++ + I + RN + + T + Sbjct: 32 PPLPYAARSNPTPRDPLHTRQKSDADLAQHVHIPSRARNTSPGL--TRNRVMNQALWVAK 89 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIRDSVVPI 285 + + +N + ++ + G A Q+ + Sbjct: 90 TGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQLG 149 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++ + ++ A + F + D + + + I Q Sbjct: 150 TGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGQLV 209 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 +N + G + ++ + + + + L Sbjct: 210 TNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPSGLQSKGE 269 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N ++E S + + VN EEL +I+ +++Y ++ K I Sbjct: 270 NL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEELVSMIETQRAYEMNAKAI 327 Query: 466 MFTDKMLQTLLEGV 479 TD ML L V Sbjct: 328 STTDAMLGYLNNNV 341 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/211 (8%), Positives = 43/211 (20%), Gaps = 36/211 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 81 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 140 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV+ + A+ + F ++ Sbjct: 141 QLPTGLQLGTGVRVVSTFKGFDQGSQQQ---TGRALDVMVNGRGFFEVQ------MPDGT 191 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 S + + + S L + N T + + A + Sbjct: 192 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 251 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + N ++ + Sbjct: 252 ALTLTDFINPSGLQSKGENLFVETTASGPAQ 282 >gi|322432989|ref|YP_004210238.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321165216|gb|ADW70920.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 412 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 51/475 (10%), Positives = 108/475 (22%), Gaps = 66/475 (13%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + F + + Q ++ N+ N D + ++ + Sbjct: 2 SFFGVPLSGLIASQSQLQAVSNNLANLDTVGFKDQNVNFS---------------DVFAQ 46 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L+ S+ Q L + + ++ + Sbjct: 47 SSLNNGSNDPVQTGLGVNASQTTSDFTDGAVSATGIASNMALTGNGFFVTKTATGATAYT 106 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + S+ ++ D + + AS Sbjct: 107 RAG--------DFTKNSSGQLVTPSGDLVMGYPAANGVVNTSGELQPIQIGTGTVIPASA 158 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + S + VY S G TV SY+ Sbjct: 159 TTKFTISANLNSSAAVGSTFASPT---------PVYDSLGDAHTLTVNYTKTGTNTWSYS 209 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V + V+S + G + + VP + M + S Sbjct: 210 VDLPTADTGAATTTVASGTLNFDTSGNLTSPTGSVAINVPTLTDGAASMNFAWNLTDSSG 269 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 +P + V + + L SN S G V+ N Sbjct: 270 NPTLTQTSLVSANSTSTQNGNASGTLTGYSIAADGTVEGTFSNISNPVALGQVAVASFAN 329 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + L + + S + + Sbjct: 330 TQGLLRTGNND----------------------------------YQATVGSGAASVGTA 355 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I+ + V++ E + +I +Q+Y + K + D++ Q L+ + Sbjct: 356 ETGGRGVITGGSVESSNVDVAAEFAKMIVAQQAYQANAKTVTTFDQISQATLQMI 410 >gi|157363239|ref|YP_001470006.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] gi|157313843|gb|ABV32942.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] Length = 261 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 6/214 (2%) Query: 271 KIKALLQIRDSVVPIFQ---NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 K +S +P + A I S + + ++ D Sbjct: 50 KNAGTPTAVNSTIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQD 109 Query: 328 NKLCQGISETICVNPQ-YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + T V+ + + L ++ N++ D +N Sbjct: 110 GRTAYTRDGTFKVDSEGRVVTSNGLALIPNIVVPADAVAINISPDGIFSAEMQDGTVQNL 169 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N +LE S +Q F + + Y V++ + Sbjct: 170 GTITLVRFVNPSGLKAVGDNL--YLETTASGEPIEGTPNQDGFGALQQGYLEKANVDVVK 227 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ +I +++Y ++ + I D MLQT+ + Sbjct: 228 EMVDMITAQRAYELNARAIQTADNMLQTVSTLKR 261 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/208 (8%), Positives = 50/208 (24%), Gaps = 15/208 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54 ++ A + +I N+ N D Y + + V + Sbjct: 1 MMVSLYSAATGMWAQQYKLDTISNNLANVDTTGYKKVRAEFQDLVYQYYKNAGTPTAVNS 60 Query: 55 QRSENKNMFDKVLHAHSS------AIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKL 107 + ++ + + + + Sbjct: 61 TIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQDGRTAYTRDGTF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + E + L ++ A+ V N + +++ + + Sbjct: 121 KVDSEGRVVTSNGLALIPNIVVPADAVAINISPDGIFSAEMQDGTVQNLGTITLVRFVNP 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRD 195 S L V D + +T + + + +D Sbjct: 181 SGLKAVGDNLYLETTASGEPIEGTPNQD 208 >gi|291276427|ref|YP_003516199.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290963621|emb|CBG39453.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 262 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +A++ ++ + F + D + + + N ++ + Sbjct: 76 AIAKMFSQGSPKETENNLDMAITGKGFFQVRLPDGTTAYTRSGNFKLDDNGNVVTSEGYA 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + + + +A L N +L Sbjct: 136 LIPQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIELADFINPAGLHSLGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + I + + V L EE++ LI +++Y ++K I D M Sbjct: 194 NTSASGAPITGVAGTNGMGQIKQGFLELSNVRLVEEMTDLITGQRAYEANSKSIQTADAM 253 Query: 472 LQTLLEGVK 480 LQT+ + Sbjct: 254 LQTVNGLKR 262 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 50/211 (23%), Gaps = 29/211 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y R+ Sbjct: 1 MMRSLYSATTGMLGQQLQIDTTSNNIANVNTVGYKRQRAEFNDLFYQNLQYAGTATSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + + F + + Sbjct: 61 LSPTGIEVGLGVRPGAIAKMFSQGSPKETENNLDMAITGKGFFQV------RLPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + L TV +A ++ + + VQ ++ ++E Sbjct: 115 TRSGNFKLDDNGNVVTSEGYALIPQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 +++ ++ ++ +AS Sbjct: 175 LADFINPAGLHSLGDNLYLNTSASGAPITGV 205 >gi|251780251|ref|ZP_04823171.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084566|gb|EES50456.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 366 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/272 (12%), Positives = 77/272 (28%), Gaps = 21/272 (7%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T + + S L +I + + ++T+ E N + DG V Sbjct: 116 TGTGADAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYLLKDGD 175 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 GK +D P +A + + ++ + + Sbjct: 176 DGKPSVAWGEKDGDAP--------VANYVDADSKNLHAVGEGAQLNTLKIPDKVLAPKRD 227 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + +E + V ++ + V L +F Sbjct: 228 ADGKPTAEFVEVP---------VKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGL 278 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + G + + + F + + V+L E+ Sbjct: 279 TSIGGNLLQTSPNSGPEIIKTPVG----KLATDFTDNSKGFGEFVQGALESSNVDLTEQF 334 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I +++ S+K+I D++LQT+ ++ Sbjct: 335 TDMITATRAFQASSKMITTGDEILQTITGLMR 366 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 35/149 (23%), Gaps = 9/149 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + + Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLY--------QNASEA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L ++ ++M + + + + D SK Sbjct: 53 TAPTSTKGGTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYA 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 KT A+ +++ ++ + Sbjct: 113 ADKTGTG-ADAKNTIGISTSGKLTGGGEN 140 >gi|254519414|ref|ZP_05131470.1| flagellar hook protein [Clostridium sp. 7_2_43FAA] gi|226913163|gb|EEH98364.1| flagellar hook protein [Clostridium sp. 7_2_43FAA] Length = 885 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 70/263 (26%), Gaps = 18/263 (6%) Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 ++ F+ + + G S+ I + +N D + Sbjct: 625 ELTFDAGAALNGYKFQIGVISPGTKTSATIDEKGKTITING--DFVTTNAITAKNIQDAL 682 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ------YRSN 347 R L G + A G +++ +I Y Sbjct: 683 TRALEGKGIAQGIAATGKPIEIGGVVSEETNGGTPIESMNSDGSINFVDATKDLKSYDGE 742 Query: 348 PSFLRDGGSVSKKFL-----WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 L+ V + + D +A L + Sbjct: 743 LKTLKIPDKVRIPGTDIELRVKTYTIDKNGVINGVLEDGRVAALGQLAMASFKNPEGLTK 802 Query: 403 -----YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 Y+ + +S L+ + + + V+L E+ + +I ++ Sbjct: 803 LGGNLYSSSVNSGDAIIKSGVGTLNDDNSNGYGDNLQGMLEMSNVDLSEQFTDMIVSSRA 862 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 + + K+I D++LQ ++ + Sbjct: 863 FQAAGKMITTGDEILQDIINLKR 885 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/275 (10%), Positives = 68/275 (24%), Gaps = 13/275 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N ++ + + Sbjct: 7 MLRSMYSGISGMKVNQTKLDVIGNNISNVGTTSFKSSRARFSDMLS--------QNVSDA 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L ++ +M+ ++ D SK + Sbjct: 59 MAPSNNQGGVNASQVGLGVQLASIDSVMTQGMMQPTGRQLDVAIDGDGFFMVSKGPAIYD 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADAD-----KEIELEISNLRRFLSELTVVNDAI 177 V A + + +I D E ++ + ++ ND Sbjct: 119 GTLEVNHRAGAHNITSQSLSNSGSEIMYSRDGSFILDEQGNLLTGDGFRVMGYSLTNDDS 178 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + + D S++ G ++ + V +++ + + + +F Sbjct: 179 SQEATGQVPNAVSTAGLDFRFGPGSQLNGFKVVLGSVGPGTVTSANVNKAEKLIIVNGDF 238 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + T + I +Q V I Sbjct: 239 SSTGALTPAQVESAINKGLSSAGISQQMFVSGKPI 273 >gi|226313061|ref|YP_002772955.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599] gi|226096009|dbj|BAH44451.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599] Length = 272 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 6/233 (2%) Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 N G+ + + A + D+V + L + Sbjct: 46 SQNVQGAGAPTAGGKGGTNPTQIGLGASIASIDTVFSAGSPMTTNLPTDLSIEGDGFFMV 105 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + E + G D + S+ + + + ++ G VS + Sbjct: 106 SPD-EGATIYYTRAGNFTRDAEGYLVNSQGMKLMNTDPAAIQISQNDGVVSYSIGKDGVI 164 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ +P L N++ + + Sbjct: 165 TTVDETGALDSTNTIGVMTFNNPGGLKKIGNNL---YENTVNAGAND--GDPMTPVTPAD 219 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I V+L EE + +I ++ + ++++I +D +L+ L+ + Sbjct: 220 AKVSIIAGQLEMSNVDLSEEFTEMIVAQRGFQANSRIITTSDTVLEELVNLKR 272 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 45/228 (19%), Gaps = 33/228 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L + + I NI N + + + M T + Sbjct: 1 MLRSMYSGISGLRGFQTKLDVIGNNIANVNTVGFKKGRVMFQDILSQNVQGAGAPTAGGK 60 Query: 49 NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 T + S + + F M + D Sbjct: 61 GGTNPTQIGLGASIASIDTVFSAGSPMTTNLPTDLSIEGDGFF-----MVSPDEGATIYY 115 Query: 102 HYISKLRDSLESYSKNL-------SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 E Y N ++ + ++ D Sbjct: 116 TRAGNFTRDAEGYLVNSQGMKLMNTDPAAIQISQNDGVVSYSIGKDGVITTVDETGALDS 175 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + + + N+ + + + D + K+S Sbjct: 176 TNTIGVMTFNNPGGLKKIGNNLYENTVNAGANDGDPMTPVTPADAKVS 223 >gi|188587648|ref|YP_001920210.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] gi|188497929|gb|ACD51065.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] Length = 366 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 21/272 (7%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T + + S L +I + + ++T+ E N + DG V Sbjct: 116 TGTGADAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYLLKDGD 175 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 GK +D P + ++ + D ++ I D Sbjct: 176 DGKPSVAWGEKDGDAP-------------VANYVDADSKNLHAVGEGAQLNTLKIPDKVL 222 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + SF V L + A + + + I Sbjct: 223 APKRDPDGKPTAEFVEVPVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGLTSIG 282 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + + N E + +G L + SD + F + + V+L E+ Sbjct: 283 GNLLQTSPNSGP-EIIKTPVGKLATDFSD-------NSKGFGEFVQGALESSNVDLTEQF 334 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I +++ S+K+I D++LQT+ ++ Sbjct: 335 TDMITATRAFQASSKMITTGDEILQTITGLMR 366 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 35/149 (23%), Gaps = 9/149 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + + Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLY--------QNASEA 52 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + Q L ++ ++M + + + + D SK Sbjct: 53 TAPTSTKGGTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYA 112 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 KT A+ +++ ++ + Sbjct: 113 ADKTGTG-ADAKNTIGISTSGKLTGGGEN 140 >gi|121997317|ref|YP_001002104.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila SL1] gi|121588722|gb|ABM61302.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila SL1] Length = 261 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 2/150 (1%) Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + + + N + ++ +L + G + + + D Sbjct: 108 PDGQVGYTRDGALQLNENGEIVTSGGYLLEPGIQVPEEAETISIGSDGTVSAKIPGDEEP 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +A L N +LE S + ++ + ++ + T VN Sbjct: 168 EEIGQIELADFINPSGLEPVGENM--FLETAASGAPEVGAPGEGALGNVMQGALETSNVN 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + EEL +I+ ++ + + + I TD+MLQ Sbjct: 226 IAEELVNMIENQRGFETNTRAISTTDEMLQ 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 1/59 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63 A+ + + N+ N + + + + V R+ N+ Sbjct: 4 ALWVAKTGLDAQQKSMQVTSNNLANVNTNGFKKDRANFEDLFYQTVRQPGSRASQDNLL 62 >gi|241761151|ref|ZP_04759240.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374770|gb|EER64231.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 418 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 37/482 (7%), Positives = 106/482 (21%), Gaps = 76/482 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVVTQR 56 F + N A + NI N+ + + + T + R Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASAKNIGQGTRLR 61 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + ++ + + A+ F ++ + + Sbjct: 62 ATIQDFTSGSMKTTNRALDMMVNGDGFF----LVKSQGASGTISLTRDGSFLTDKNNNVV 117 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 L DN+ + N +T++ TV N Sbjct: 118 TSDGHYLQVYATDNSGNIYTNGDTASA-----------------------TGGRTVKNLT 154 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + ++ ++ + + Sbjct: 155 LPSYEDQITLDSTDKGSLVTVGNSLAATGNVTVDGHTIYGAKITLGGAGYTDTANTKLSG 214 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + ++ + V +S +A + + + Sbjct: 215 GVLTITGGRVDNASTRVANTVTYTSTNATATVNPSATGTTLTNITSLGTLASNGSTYTGK 274 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + +D S ++ S Sbjct: 275 IMDASGAEDTTG--------------------------------------KVSPIQKDES 296 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +A + + + + +N L W S Sbjct: 297 GDTSSALSNIAVATDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNA--NWTVTGTS 354 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + ++L +EL LI ++++ ++K I ++M+ ++ Sbjct: 355 GNLNYREADTSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVM 414 Query: 477 EG 478 Sbjct: 415 NI 416 >gi|225158946|ref|ZP_03725258.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] gi|224802441|gb|EEG20701.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] Length = 260 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 2/161 (1%) Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 I+ D + +P + + S + ++ Y Sbjct: 102 FFEIQRPDGTTAYTRDGSFKQDPNGQIVTADGLPVLSGFQAVPNGTTDITISDTGDVTYT 161 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 ++ + L N + E S + + + F + Y + Sbjct: 162 NAAGNETFRLTLTRFANPAGLRSLGGNL--YEETPASGTPETGQPGEQGFGTTQQYYIES 219 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ EE+ LI +++Y +S+K I +D+MLQ + + + Sbjct: 220 SNVNIVEEMVNLIVAQRAYEVSSKAIQTSDEMLQNVTQLKR 260 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/238 (7%), Positives = 48/238 (20%), Gaps = 27/238 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + A +I N+ N + + R Sbjct: 1 MNLSLYSAATGMEAQQLNLNTIANNLANVNTAGFKRSKIEFHDMLYQSPRNAGAETGNGN 60 Query: 47 --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + L A S + + F ++ + Sbjct: 61 LLPTGVEIGNGSRISSTAKIFTQGQLTASSEKLDIAIQGEGFFEIQ------RPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + +V A ++ L ++ Sbjct: 115 TRDGSFKQDPNGQIVTADGLPVLSGFQAVPNGTTDITISDTGDVTYTNAAGNETFRLTLT 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + + AS ++ + I + + ++ Sbjct: 175 RFANPAGLRSLGGNLYEETPASGTPETGQPGEQGFGTTQQYYIESSNVNIVEEMVNLI 232 >gi|320354342|ref|YP_004195681.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] gi|320122844|gb|ADW18390.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + Y VNL EE++ +I ++++ I++ +I +D+M Sbjct: 193 ETEASGAPLIGAPGTNGIGTLLQGYVENSNVNLVEEMTHMITTQRAFEINSNVITTSDEM 252 Query: 472 LQTLLEGV 479 +QT+ V Sbjct: 253 MQTVTNMV 260 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 35/179 (19%), Gaps = 27/179 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 + + + I N+ N + + SP Sbjct: 3 SLWTSTTGMSAQNLNMDVIANNLANVSTTGFKKSRADFQDLLYQIMKVPGSPTSADTRSP 62 Query: 48 ENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V + K + + + + F + N Sbjct: 63 TGIQVGLGVKPAAVTKVFTEGDIVQTENTLDVAIEGPGFFQV------TLPDGNIAYTRA 116 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L+ E + ++ + + + + D + + Sbjct: 117 GNLKLDGEGRLTTSDGFPIEPEIVIPEDAREVTISQTGVVSAIVGDDTTSTELGNVDLV 175 >gi|326402284|ref|YP_004282365.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] gi|325049145|dbj|BAJ79483.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] Length = 425 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 49/481 (10%), Positives = 128/481 (26%), Gaps = 57/481 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + + S F +I NI N+ Y N Sbjct: 1 MSIFGALDTSVSGLQAQSSAFTNISDNIANSQTIGYK-------------------GVNT 41 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + ++ + +S G ++ + E + +N + I+ S + Sbjct: 42 HFTNYLVQSTASNNGPDSVVANPEYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTT 101 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 T +A++ +N + Sbjct: 102 TAGKTTQTFDAQQYYTRAGD------------------------------FTLNSSGYLV 131 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEK 239 + + S + I + + TL T + Sbjct: 132 NGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSATLPTTPSSTPVTTQ 191 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ Y P+ + V+ + + + N ++ + G Sbjct: 192 VDVYDSLGNMQPLNLSWSPVTGSANTWTLNVSSPNATPSTVGSATMAFNTNGTLSSITAG 251 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + A I T + ++ + + S Sbjct: 252 TGATSPAAGQLQISPSYNGSAQPITLDFGAPG----STAGLTQYAGTSLNLQGVSQNGSP 307 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ ++ ++ +Y + F+K P+A + L + S + Sbjct: 308 SGAFSNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQI--ETATQASGAA 365 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + V++ + + LI +Q+Y + K++ ++L T + V Sbjct: 366 TINAVGGSG-GALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVNMV 424 Query: 480 K 480 + Sbjct: 425 Q 425 >gi|213622267|ref|ZP_03375050.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 107 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + N T + + + S V + + + GVNL EE L + Sbjct: 22 VGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 81 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +Q Y + +++ + + LL Sbjct: 82 YQQYYLANAQVLQTANALFDALLNI 106 >gi|253682640|ref|ZP_04863437.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253562352|gb|EES91804.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 333 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 6/121 (4%) Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL-----LEYARNSIGWLEKNRSDSH 419 ++ + D + L Y+ RS Sbjct: 214 SFSIEKNGLIKGVLDDGTITALGQIAMTSFKNPEGLKKEGKNMYSNTPNSGKPVFRSGIG 273 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S+ + + + V+L E+ + +I +++ S K+I D++LQ ++ Sbjct: 274 ADKDNSES-YGDMIQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMISTGDEILQDIINLK 332 Query: 480 K 480 + Sbjct: 333 R 333 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 11/166 (6%), Positives = 28/166 (16%), Gaps = 36/166 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + + NI N + Sbjct: 1 MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTAFKGSRVRFQDMLSQNVQEAVGPGKNLG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-- 100 V V+ + + +L S + + + + + + Sbjct: 61 GVNGRQVGLGVSVAGIDTVVSQGMLQPTSRNLDVAIDGTGYLVVAKGKLGESSADTGIEL 120 Query: 101 --------------THYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 E + I+ A+ Sbjct: 121 NDGNINENSNFQINYTRDGAFALDYEGNLLTSEGYRVMGYAIEGAD 166 >gi|256370963|ref|YP_003108787.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007547|gb|ACU53114.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 431 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 44/476 (9%), Positives = 109/476 (22%), Gaps = 46/476 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + + +I NI NA+ Y T + Sbjct: 1 MTKSLSSAISGIEANQEWLDNIANNIANANTTGYQSTQTEFA---------------DLL 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + A GQ + + + S + + + + Sbjct: 46 YQQQSAAGGPVPGQTGGTNPLVVGSGVRVSATPTDFSQGTIVQTGTSTDVAIQGQGFLVV 105 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + V A + + + + + Sbjct: 106 NQGGQNYYTRDGALQLDGAGQLVTASGALVMGWVPNAAGQVNQNAPLAALTIPQGQVAQP 165 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 L S + ++T ++ V T + + + Sbjct: 166 VATSTITLG---GNLPAGSSNPVVVTTTGYDDLGNPVPIQ--LTFTPSTTANQWTLTAET 220 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + S G S G+I A+ + Sbjct: 221 TPPGATSPVALTVGGASSQTVTFDPATGQISAI-------------------SGTSTANP 261 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + G + D S+P+ + Sbjct: 262 DQLALGGFPTSYDLPAGYAMNLDFPTPGTAQAVTQFA-----ASSPTAQVTNQNGYPSGA 316 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + Y + + +A L + S + L Sbjct: 317 LAGFTIGSDGVIEGTYANGRTQVLGQIALAQFANAQGLSKQGNLLYA--ATTNSGAPQLG 374 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V++ EL+ L+ + Y + K++ T +LQ+L++ Sbjct: 375 SPGAAGLGQLVGGALESSNVSIGSELTNLVVAQTDYQANTKVVQTTATVLQSLVQM 430 >gi|297183134|gb|ADI19277.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0200_39L23] Length = 262 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 2/192 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++ E + F + + I + +N Sbjct: 73 KFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQPNGIVGYSRDGHFNIDGMGRLVTND 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L D + ++ + ++ + +A L +N Sbjct: 133 GMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQLARFQNPAGLTPIGKNL- 191 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++ S + + +++ + V+L EE+ +I +++Y +++K I Sbjct: 192 -YVSTPASGNAIVDAPGANSMGSLTQGFLERSNVSLVEEMVNMITSQRAYEVNSKAIQSA 250 Query: 469 DKMLQTLLEGVK 480 D+ML+ V+ Sbjct: 251 DEMLKNTNNLVR 262 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 10/180 (5%), Positives = 28/180 (15%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 ++ A + + N+ N + Y + V Sbjct: 1 MMRALYTAATGMAAQQRNIDTTANNLANVNTSGYKKSKVHFQDLLYHNERTAGVPSSVST 60 Query: 57 SENKNM---------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + L + + F + + Sbjct: 61 QVPVGLHVGHGVKFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQ------PNGIVGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 +L + + +R + E + Sbjct: 115 SRDGHFNIDGMGRLVTNDGMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQ 174 >gi|46203395|ref|ZP_00051590.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 293 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 75/288 (26%), Gaps = 5/288 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-NVTVVTQRSEN 59 MSL+ V + N S + +++ NI+NA+ Y R + + V T S Sbjct: 1 MSLIGVLRTGVSGMNAQSNRISTVAENIQNANTTGYKRTSAEFSSLLLDSGDVGTYNSGA 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDS-LESYSKN 117 + I + D N Sbjct: 61 VETTLRRSIGERGPISSTNSDKDLAIQGNGFFVVRDESGAPFLTRAGNFVVDGKSGNLVN 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 L + N + + + + + + LS T V D Sbjct: 121 AGGFTLLGYSLANGAPNPVLNGVADLKPVNVNVMGQEARPSTNATVSGNLSYETPVYDP- 179 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 A + + L D + Q + + ++ N + + T+ + F Sbjct: 180 TAAGAIGYSKKNSLKVYDNVGQPLILDVQMTKTSTNTWSVKFFDPAAPTV-SLGSSTVTF 238 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 + + +N +G V+ + AL D P Sbjct: 239 DGNGKVSSGGSANVAVPNGRTVAVDMSGLTQLSGAHALTGTADGSAPT 286 >gi|237752020|ref|ZP_04582500.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] gi|229376587|gb|EEO26678.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] Length = 764 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 16/216 (7%) Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 ++R + L V+ D A + DL S Sbjct: 554 WEVRTEIYDSTGKALISDTPVMSEITFNADGSANATPFEVPFNNGSITVDLTKSEDGKTS 613 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + + + ++ ++ + + VA Sbjct: 614 SNFAYT-----DSTTKSITQDGTASGIMKDIVINKDGIILVNFTNGRTEPIGRFGVAAFV 668 Query: 396 TNVTLLEYARNS-------IGWLEKNRSDSHDLHMKSQVV----FNHISESYSNTVGVNL 444 + L + N I S L + F + + T V+ Sbjct: 669 NDQGLSKVGGNLFEMNARTINGQTSVVSGPPILAWNEDGLAGLKFGQVMDHMLETSNVDT 728 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI ++ Y +S K I D+++Q ++ + Sbjct: 729 GTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKR 764 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 29/150 (19%), Gaps = 23/150 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ F + S NI N + Y Sbjct: 1 MVGSFYNGISGIKTHQFGIDSTSNNIANVNTTGYRGNLPEFKSLFATNLNFINSNSPINN 60 Query: 47 ----PENVTVVTQRSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNS 99 + S + D + S G + ++ S + + Sbjct: 61 DYNYGATIGSNAINSNDGTYVKADGDFNVAYSGKGWFVVGLDKSGEFDIKSPNYTGTQQN 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVID 129 E Y N S + + Sbjct: 121 FFTRDGSFSLDGEGYLVNSSGYYMYGINLG 150 >gi|242309658|ref|ZP_04808813.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] gi|239523659|gb|EEQ63525.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] Length = 750 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 46/472 (9%), Positives = 120/472 (25%), Gaps = 14/472 (2%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68 + A N D + + + + + +K + Sbjct: 293 SGSSNLLAAQVAI----NNF--KDTTG-----VEALTRGDTLILQNTNQLDGDGSNKNIR 341 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128 + ++ L ++ + + T S + + +L + Sbjct: 342 VTGRSGAALGFGENPNNLDSAVTVTTAFKYTYTLQTDADSTSGQFRTTEDLRALLQQDAN 401 Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 E + +A +++ + +N+ + A Sbjct: 402 KVKEFGGDSAAAAAGMNGAGGVPPTFLQSNYTVSVKLNSTGQFEINNKDDGVNVANGAAG 461 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 D ++ + ++ + + ++ N + T + T+ Sbjct: 462 AAFDNLNIFVSAYNDDLTTTNVLFKNQMKAMNTGVLVEGGNVTSTAGLRMATYAQTLDIY 521 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 + + + ++ + + + + Q + + + + + + Sbjct: 522 DSLGNKHEFSIEFTKVASNQWDWRIIVPEPAEIIGASAQRP-NILEGGSVTFGEQGEILG 580 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 N + L G S + + G + Sbjct: 581 FNPSTIQFKPNNGAAFPQSIDLDFGTSGGYDGLTSTAAESQANKVTGDGYASGMLQDFYF 640 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 +I + + N VA L E N E S + Sbjct: 641 DATGTMIGKFDNGQNLALAQVAVATFANYEGLQESGSNLYS--ESPNSGQATIGTAGTGG 698 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I S +L L+ LI V++ + S+K I +D++L TLL + Sbjct: 699 RANIQASKLEMSNTDLSRGLTQLIVVQRGFQASSKSITTSDQILNTLLGLKQ 750 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 34/394 (8%), Positives = 78/394 (19%), Gaps = 37/394 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L + NI N + + + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRSATIPYAGYG 60 Query: 52 ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + K L + + Sbjct: 61 GVNDYSVGLGTGIETTTKVFSQGSLQNTDRKADLALEGNGMFVVSNN-----GGFTNMYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S I+ V D ++ + + V + I+ ++ Sbjct: 116 RDGAFSFDAVGNLVTTSGYIVQGWVRDLSQLNCNCGSGNINRVDSTGPVGNITIDPRLTI 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-----NNDM 217 + S +T + LD + I + Sbjct: 176 PAKATSSVTGNINLTSGTKTENTTCPSPLDTAADNNYIAGGLDRIYDTTDKQIEVAQDMG 235 Query: 218 VVYTSDGTTLF-------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 V++ G L + E + T + ++ I I+GV ++ Sbjct: 236 VMFNDAGEALQLQEGQGIWVSYQTATTEPLQIDTNFNGTSSITINGVTITWTNNPNTSGS 295 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 Q+ + + + S + G + Sbjct: 296 SNLLAAQVAINNFKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTGRSGAALGFGEN 355 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + V ++ + D S S +F Sbjct: 356 PNNLDSAVTVTTAFKYTYTLQTDADSTSGQFRTT 389 >gi|212709494|ref|ZP_03317622.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] gi|212687832|gb|EEB47360.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] Length = 260 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 62/181 (34%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 K + F+ + D + + + + Q ++ + + Sbjct: 82 SQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQRNQDGQLVTSSGYQVVPAIM 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + Y D+ + + + L N ++E S Sbjct: 142 IPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFINDAGLESMGENL--YMETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNESAPGTNGAGLLYQGMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44 >gi|213418634|ref|ZP_03351700.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 142 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + E L + + + + AD ++S + + SL+ Sbjct: 61 SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLAD--KSSSLSGSLQSFFTSLQ 118 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQ 136 + N + + +I AE +V Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVN 142 >gi|85715029|ref|ZP_01046014.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] gi|85698226|gb|EAQ36098.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] Length = 640 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/450 (7%), Positives = 87/450 (19%), Gaps = 18/450 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 M + N + S +I NI N+ Y T + +P Sbjct: 28 MGIFDALNTSVGGLQAQSFALQNISGNIANSQTTGYKGITTAFVDLIPDSTTPNRQVAGG 87 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108 + + A + F ++ D+ + + Sbjct: 88 VTAYATPTISSQGTVSASTVGTYMAINGDGFFNVQTPTGRVDNQPQFSGVTYYTRRGDFQ 147 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + N + L +D + + ++ + + + + Sbjct: 148 VDAHGHLVNSAGYYLMGVAVDP--KTGNPLGNVPQVLKFQNSFVPAQATTTVQYAANLPA 205 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 ++ A + + N T+ T Sbjct: 206 VPRTLSSATAPVGSITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNTTMGSPATNQQTPPV 265 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + S ++ V ++ + + Sbjct: 266 AITSATLLSGTAPSDSLPGGFAVGDTITVNGTTITFTDASTALPPGAQDATHVRIDDTVG 325 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP----QY 344 L + G D G G + + Sbjct: 326 DLLGKIGAITGQAPTIDAGTGAITLHTGTAQDLSVTSASSGWTAMGFGATTNIARGGGGT 385 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + ++ ++ + + Y G + T + Sbjct: 386 PGAGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFY 445 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + + + + V +S Sbjct: 446 QADPNATGTQAAWINVGTNFTFGVNGQLSS 475 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 45/372 (12%), Positives = 98/372 (26%), Gaps = 11/372 (2%) Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DSL + T I + + D ++ +I + Sbjct: 280 DSLPGGFAVGDTITVNGTTITFTDASTALPPGAQDATHVRIDDTVGDLLGKIGAITGQAP 339 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + AI T + D I+ V ++ T+F Sbjct: 340 TIDAGTGAITLHTGTAQDLSVTSASSGWTAMGFGATTNIARGGGGTPGAGVVIANDQTIF 399 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T T+ + + +S + D Q Sbjct: 400 QQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNL---FYQADPNATGTQA 456 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + S + ++ G + L N S + N Sbjct: 457 AWINVGTNFTFGVNGQLSSPVGSS-ITIPSVSVGSQSLGNLTLNIGSGGLTQYASSGGNA 515 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + ++ + + N + ++ N L + Sbjct: 516 TINAINQNGYAAGQLQSVAINNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLKAL--DGG 573 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + S HIS S ++ +E + LI +Q+Y+ + K+I Sbjct: 574 AYAVTDESGPAIAGAA-----GHISGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTA 628 Query: 469 DKMLQTLLEGVK 480 + M+Q LL ++ Sbjct: 629 NSMVQDLLNVLR 640 >gi|148259130|ref|YP_001233257.1| flagellar hook protein FlgE [Acidiphilium cryptum JF-5] gi|146400811|gb|ABQ29338.1| flagellar basal body FlaE domain protein [Acidiphilium cryptum JF-5] Length = 425 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 49/481 (10%), Positives = 128/481 (26%), Gaps = 57/481 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + + + S F +I NI N+ Y N Sbjct: 1 MSIFGALDTSVSGLQAQSSAFTNISDNIANSQTIGYK-------------------GVNT 41 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + ++ + +S G ++ + E + +N + I+ S + Sbjct: 42 HFTNYLVQSTASNNGPDSVVANPEYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTT 101 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 T +A++ +N + Sbjct: 102 TAGKTTQTFDAQQYYTRAGD------------------------------FTLNSSGYLV 131 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEK 239 + + S + I + + TL T + Sbjct: 132 NGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSATLPTTPSSTPVTTQ 191 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 ++ Y P+ + V+ + + + N ++ + G Sbjct: 192 VDVYDSLGNMQPLNLSWSPVTGSANTWTLNVSSPNATPSTVGSATMAFNTNGTLSSITAG 251 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + A I T + ++ + + S Sbjct: 252 TGTTSPAAGQLQISPSYNGSAQPITLDFGAPG----STAGLTQYAGTSLNLQGVSQNGSP 307 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ ++ ++ +Y + F+K P+A + L + S + Sbjct: 308 SGAFSNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQI--ETATQASGAA 365 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + V++ + + LI +Q+Y + K++ ++L T + V Sbjct: 366 TINAVGGSG-GALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVNMV 424 Query: 480 K 480 + Sbjct: 425 Q 425 >gi|183598619|ref|ZP_02960112.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] gi|188020798|gb|EDU58838.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] Length = 260 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ K + F+ + D + + + + Q ++ + Sbjct: 76 ATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ I Y D+ + + + L N ++ Sbjct: 136 IVPAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + T VN+ EEL +I+ +++Y I++K + +D+M Sbjct: 194 ETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44 >gi|330892701|gb|EGH25362.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. mori str. 301020] Length = 123 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 38/121 (31%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 AG D N + V +L + + + Sbjct: 3 NDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTNGGVGTSLSGAYADLVSVVGTLAGQG 62 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S V + + GV+L EE + LIK +Q Y S+++I + TL+ Sbjct: 63 KSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIKYQQYYTASSQIIKAAQTIFSTLINS 122 Query: 479 V 479 + Sbjct: 123 L 123 >gi|326796595|ref|YP_004314415.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] gi|326547359|gb|ADZ92579.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] Length = 261 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 M + + F D + S + Q + L Sbjct: 77 MQKNFEEGDYNVTDRNLDVAIQGAGFFQITRSDGTTAYTRDGSFQLNSEGQMVDSSGNLL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 D + ++ + ++ + +A L N + E Sbjct: 137 DPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSITIANFINPAGLYFLGGNL--YEE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + + + + + + VN EEL +I +++Y +++K+I D ML Sbjct: 195 TSASGAPIVGVPGEEGLGELGQGMLEASNVNSVEELVNMITTQRAYEMNSKVISTADGML 254 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/183 (8%), Positives = 43/183 (23%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + A+ +Q + I N+ N + + + T Sbjct: 1 MQTALWTAKTGLTAMDRQLSVISNNLANVSTTGFKKERAVFENLMYQTLKSPGGLSAQNT 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + N + + + F + + Sbjct: 61 ELPSGLQIGAGVRVTGMQKNFEEGDYNVTDRNLDVAIQGAGFFQI------TRSDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E + S ++L + +++ V + D+E I+ Sbjct: 115 TRDGSFQLNSEGQMVDSSGNLLDPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSIT 174 Query: 162 NLR 164 Sbjct: 175 IAN 177 >gi|307719963|ref|YP_003891103.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] gi|306978056|gb|ADN08091.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] Length = 420 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/477 (6%), Positives = 103/477 (21%), Gaps = 61/477 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F + S + N+ N D + D + + Sbjct: 2 MTQAFYTGISGIKTNSTGIDIVSDNMANIDTIGFRGNDYEFSSL-----------FENML 50 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L S++ + + + + S ++ D N + Sbjct: 51 STDTLGTPSNSSIGVGSQLQASPMVQQKGSFMISDKS--TDLALFEDGWFGIKGNGNTLY 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 ++ + + + Sbjct: 109 TRDGNFTFDKDDDLVTQDGFHVLGTMGNNISD---------------------NDVLIEQ 147 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +++ L S + T + Sbjct: 148 LPEVKLKDVVEQEPLRFPKSLTFPPEATSNAKFIGNLGTE----------PFTRTMSASV 197 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + N + ++ + + + + + Q Sbjct: 198 VDPQNNKNDLRLEFSLSQIQTPPGTQWDVVAKTQSLDGTKLYDTQTG------------- 244 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ ++ I + + + + P + Sbjct: 245 ---QVSFDASGALISNTLTTIDNNGAPVSIDLGNNFDGVVSISNVPISASSTADGTIGGD 301 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ ++I + + + V + L + + Sbjct: 302 LQGYDINKNGEVIATFTNGMQSSVGKIAVYHFQNDQGLNRISGTRFQESTNSGKALFFKD 361 Query: 423 MKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 K + + ++ + + L+ LI ++++Y+ ++K + D+M+Q L Sbjct: 362 EKGENIIGTNMANFKLEGSNIEMSYGLTELIILQRAYDANSKSVTTADQMMQKALNM 418 >gi|150020364|ref|YP_001305718.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] gi|149792885|gb|ABR30333.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] Length = 261 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 3/193 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +L R+ E+ + + F ++D + I N + ++ Sbjct: 72 TKLSATTRIFTQGNLERTGNSLDIAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITS 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L V + + N++ + D +N + L N Sbjct: 132 NGNLLSPNIVVPQNAVAI-NISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIGDNL 190 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 +LE S + Q F I + Y V++ +E+ +I ++Y ++++ + Sbjct: 191 --YLETPASGAPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAYELNSRTVQT 248 Query: 468 TDKMLQTLLEGVK 480 D+ML+T + Sbjct: 249 ADEMLRTASNMKR 261 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 17/224 (7%), Positives = 51/224 (22%), Gaps = 27/224 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A + ++ NI N D Y + T Sbjct: 1 MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKTEFQDLLYDYSKNAGAATAQNS 60 Query: 45 ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + L +++ F ++ Sbjct: 61 IHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDIAISGDGFFQIQ------LQDGRIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + ++L ++ V N + +++ + + Sbjct: 115 TRDGQFKIDGNGRIITSNGNLLSPNIVVPQNAVAINISPDGIVTAELQDGTLQNLGTITL 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 S L + D + +T + + +D + + Sbjct: 175 VRFINPSGLKAIGDNLYLETPASGAPVEGTAGQDGFGSILQGYV 218 >gi|255523696|ref|ZP_05390662.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|296186699|ref|ZP_06855101.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7] gi|255512565|gb|EET88839.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|296048736|gb|EFG88168.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7] Length = 338 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 9/265 (3%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T G+ + P D+ + + V + + P V ++ Sbjct: 79 STGQGSMQPTSAPLDVAIDGDGYFIVGTGAVPEDSGTVQITVTDDEKHTMSPDGVTTSFT 138 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + L+ S + NS+ + Sbjct: 139 RDG-----SFTLDTQGNLLTSDGLRVYGYANSKVSITYSKDPKVACTGTYDANAEGGADT 193 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 P + + + K G I DS +A Sbjct: 194 EMNAEGLVPLVIPEYLTAGDKNHRIKSYSIGSDGTITATLDSGTAVLGQIAMASFKNPAG 253 Query: 400 LLEYARNSIGWLEKNR----SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L + +N + + + + + V+L EE + +I Sbjct: 254 LSKLGKNLYQISPNSGDPVVRSTSTSSDDNSAAYGDARQGMLEMSNVDLAEEFTNMIIAN 313 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 +++ + K+I D++LQ L+ + Sbjct: 314 RAFQANGKIITTGDEILQDLVNLKR 338 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/326 (7%), Positives = 66/326 (20%), Gaps = 26/326 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----- 57 +L + ++ I NI N+ Y + + Sbjct: 1 MLPSMFSGISGLKVNQRKLDVIGNNIANSSTTAYKTQRARFEDMVSQSMASATGASSKLG 60 Query: 58 ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + + S+ + + + +D T Sbjct: 61 GTNPRQVGLGVQLAGIDTSTGQGSMQPTSAPLDVAIDGDGYFIVGTGAVPEDSGTVQITV 120 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + T + Q ++ ++ K + Sbjct: 121 TDDEKHT------MSPDGVTTSFTRDGSFTLDTQGNLLTSDGLRVYGYANSKVSITYSKD 174 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + N T + L + L S + ++ + Sbjct: 175 PKVACTGTYDANAEGGADTEMNAEGLVPLVIPEYLTAGDKNHRIKSYSIGSDGTITATLD 234 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 GT + + + I + S A R + Sbjct: 235 SGTAVLGQIAMASFKNPAGLSKLGKNLYQISPNSGDPVVRSTSTSSDDNSAAYGDARQGM 294 Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIA 308 + + L E +I + Sbjct: 295 LEMSNVDLAEEFTNMIIANRAFQANG 320 >gi|269792757|ref|YP_003317661.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100392|gb|ACZ19379.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] Length = 262 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 61/201 (30%), Gaps = 2/201 (0%) Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + +++ +R++ + + F + D + + I Sbjct: 64 NGIQVGLGSRVSGTSRIMGQGNMQVTGNPTDVAIEGDGFFQVTMPDGTVAYTRDGAWRID 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N Q + +L + + + D + +A Sbjct: 124 GNGQIVTADGYLLEPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQEIGQIQLARFVNPGG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N ++E S + + + + V + EE+ +I +++Y Sbjct: 184 LKALGKNL--FIETPASGAPIVGNPGEEGLGTTIQRTLEMANVQVVEEMVNMIVAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D++L+ + Sbjct: 242 ANSKTIATADELLRIANNLRR 262 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 26/177 (14%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + N+ N + + + Sbjct: 1 MIRSLWSGATGMIAQQTNLDVVSHNLANVNTAGFKKLRADFQDLMYQIDREPGAPVEPAS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V M + + F + Sbjct: 61 MVPNGIQVGLGSRVSGTSRI---MGQGNMQVTGNPTDVAIEGDGFFQV------TMPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 R +L V + + + + D + + Sbjct: 112 VAYTRDGAWRIDGNGQIVTADGYLLEPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQ 168 >gi|220934396|ref|YP_002513295.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] gi|219995706|gb|ACL72308.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] Length = 263 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 2/186 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ + A + F + D + + S + + Q ++ + Sbjct: 76 ATEKMFTQGNVTQTENALDMAIEGRGFFQILMPDGNIAYTRDGSFQLNSDGQLVTSGGYE 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D G V + +V + +A L +N ++ Sbjct: 136 VDPGIVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQLADFINPAGLQPIGQNL--FI 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + VN EEL +I+ +++Y +++K I D+M Sbjct: 194 ETAASGAPQAGNPGLDGRGRLLQGFLESSNVNTVEELVNMIETQRAYEMNSKAISTADQM 253 Query: 472 LQTLLE 477 LQ + Sbjct: 254 LQYVNN 259 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 55/234 (23%), Gaps = 31/234 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 + A+ + + + I N+ N + + + + + V ++ Sbjct: 1 MNKALWIAKTGLDAQQTRMSVISNNLANVNTTGFKKGRAVFQDLIYQTVRQAGAQAAQDT 60 Query: 62 --------------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + +A+ + F + N Sbjct: 61 ELPSGLMLGTGVRTVATEKMFTQGNVTQTENALDMAIEGRGFFQIL------MPDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-- 159 + + + + ++ + + + + Sbjct: 115 TRDGSFQLNSDGQLVTSGGYEVDPGIVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQ 174 Query: 160 -ISNLRRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211 + + N I+ + A + LD R LLQ E ++T+ Sbjct: 175 LADFINPAGLQPIGQNLFIETAASGAPQAGNPGLDGRGRLLQGFLESSNVNTVE 228 >gi|32266580|ref|NP_860612.1| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262631|gb|AAP77678.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 262 Score = 75.5 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 8/200 (4%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 V P+ ++ + I GN L + + Sbjct: 71 GVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIELPDGNIAYTRAGSFKLDNDGNVVN 130 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 YR P G+ + + + F AG L Sbjct: 131 AEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNILGQIEIVNFINPAG------L 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N ++ N S + F + + + V L EE++ LI +++Y Sbjct: 185 HSLGDNL--FINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLITGQRAYEA 242 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 243 NSKTIQTADSMLQTVNGLKR 262 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 53/255 (20%), Gaps = 34/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y ++ Sbjct: 1 MMRSLYTASTGMLGQQLQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + F ++ N Sbjct: 61 ISPTGIEVGIGVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIE------LPDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + N L + N T + I +I Sbjct: 115 TRAGSFKLDNDGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNILGQIE 174 Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + +N + D Q ++S + + + Sbjct: 175 IVNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLI 234 Query: 215 NDMVVYTSDGTTLFE 229 Y ++ T+ Sbjct: 235 TGQRAYEANSKTIQT 249 >gi|237750021|ref|ZP_04580501.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] gi|229374432|gb|EEO24823.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] Length = 262 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 2/174 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F + D + + + + ++ +L ++ Sbjct: 91 NPLDVAIMGKGFFPIQLPDGNIAYTRSGNFKLDDQGNIVTSEGYLVQPQITVPPEAQSIN 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 A + + + + L N ++ N S + Q Sbjct: 151 IGADGTVSVTLGNNGQAEVLGQIQLVNFVNPAGLHGLGDNL--YMNTNASGEPIEGIAGQ 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + V L E++ LI +++Y ++K I D MLQT+ + Sbjct: 209 DGLGQIRAGFLELSNVRLVSEMTDLITGQRAYEANSKSIQTADSMLQTVNGLKR 262 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/258 (8%), Positives = 55/258 (21%), Gaps = 40/258 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + + R+ Sbjct: 1 MMRSLYTATTGMLGQQLQIDTTSNNIANVNTVGFKRQRAEFNDLFYQTLQFAGTQTSETT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + + + F ++ N Sbjct: 61 LTPTGIEVGVGVRTGAINRIYSQ---GSPKETENPLDVAIMGKGFFPIQ------LPDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + ++ + E N + + E+ Sbjct: 112 IAYTRSGNFKLDDQGNIVTSEGYLVQPQITVPPEAQSINIGADGTVSVTLGNNGQAEVLG 171 Query: 159 EISNLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 +I + L + +N + D L Q ++S + +S + Sbjct: 172 QIQLVNFVNPAGLHGLGDNLYMNTNASGEPIEGIAGQDGLGQIRAGFLELSNVRLVSEMT 231 Query: 212 RNNNDMVVYTSDGTTLFE 229 Y ++ ++ Sbjct: 232 DLITGQRAYEANSKSIQT 249 >gi|218887604|ref|YP_002436925.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758558|gb|ACL09457.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 260 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 66/217 (30%), Gaps = 4/217 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + + +I + + + + + + F + Sbjct: 48 NMRIAGAATEGDNRIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEGDGFFLVQV 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D G + +N L+ +V + G+ ++ + Sbjct: 108 NGEDAYTRAGAFKLNQDGVVVTANGYTLQPEFTVPAETKNITVTENGHISALDSNGAAL- 166 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 P+ L RN ++ S + + I++ + V Sbjct: 167 -AEADIPLYTFINPAGLEARGRNL--YVPSEASGEAVEGVPGENQVGTIAQGFLEMSNVE 223 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y +++K I +D MLQT ++ + Sbjct: 224 VVDEMVNMIVGQRAYEMNSKAIQTSDTMLQTAVQLKR 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 10/152 (6%), Positives = 27/152 (17%), Gaps = 28/152 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A I N+ N + ++ + Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANVNTTSFKKSRAEFEDLMYQNMRIAGAATEGDN 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K +++ + Sbjct: 61 RIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEG-------DGFFLVQVNGEDAY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + + L AE Sbjct: 114 TRAGAFKLNQDGVVVTANGYTLQPEFTVPAET 145 >gi|260222468|emb|CBA32062.1| hypothetical protein Csp_D30240 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 104 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 W+E + S L + F V+L EL ++ +++Y + + I Sbjct: 34 NWIETSASGQPVLGSPGEGKFGKTRSGALEDSNVDLTGELVNMMTAQRNYQANAQTIKTQ 93 Query: 469 DKMLQTLLEG 478 D+++ TL+ Sbjct: 94 DQIMSTLVNL 103 >gi|78777301|ref|YP_393616.1| flagellar basal body rod protein FlgG [Sulfurimonas denitrificans DSM 1251] gi|78497841|gb|ABB44381.1| Flagellar basal-body rod FlgG [Sulfurimonas denitrificans DSM 1251] Length = 262 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 N+ + + + L N ++E + S Sbjct: 146 ATNINIGTDGTVSVVQAGQAQATQIGQMTLTNFINPAGLHSMGDNL--YIETDSSGQPVE 203 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + V L EL+ LI +++Y+ ++K+I +D+MLQT + Sbjct: 204 GTPGLDGLGVLRQGFVELSNVELVVELTDLITGQRAYDSNSKVITTSDEMLQTTNNLKR 262 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 53/212 (25%), Gaps = 29/212 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + + + Sbjct: 1 MMQSLYTASTGMIGMQTQINTTANNIANVNTIGFKKSRAEFADLMYKVMDYAGTSTSDVT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK + L + + + F L+ + Sbjct: 61 KSPTGIEVGLGVRPTAINKVFSEGSLKQTDNELDVAVTGKGFFKLE------LPDGSEVY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N L V+ +A + + + VQ +A A + ++ Sbjct: 115 SRNGAFKVDENGSIVNSDGYRLVPEVVIPPDATNINIGTDGTVSVVQAGQAQATQIGQMT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 ++N ++ ++ +S Sbjct: 175 LTNFINPAGLHSMGDNLYIETDSSGQPVEGTP 206 >gi|89092136|ref|ZP_01165091.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] gi|89083871|gb|EAR63088.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] Length = 634 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 2/170 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + I+ + Q+ S K + Sbjct: 467 VTFTSGATAPSITVSGADPANNATTITLDLTGTTQFASASIVKSSTQDGYTKGDLIGVSF 526 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + +++ + + N++ +A L W S ++ + Sbjct: 527 SETGEMVASFSNGQNQDLGVVAIATFENQSGLQP--SGDTEWTATLTSGDAIVNPPGTGL 584 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + V+L EL LI+ ++++ ++K I + + Q +L+ Sbjct: 585 NGTLRSAALEQSNVDLSAELVALIEAQRNFQANSKTIETQNTVTQAILQI 634 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/421 (8%), Positives = 92/421 (21%), Gaps = 26/421 (6%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV----------- 53 A FN A AS I NI N+ + T V Sbjct: 2 AGFNTAVTGLKAASTDLDVIGNNIANSSTVGFKTSRTEFGDIYATAVVGAGSSNVAGSGV 61 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 T ++ + ++ + F L + + + Sbjct: 62 TVSDIAQDFQAGTIEFTNNNLDLAINGSGFFQLDDGQGGTT------FTRAGAFQLDKDG 115 Query: 114 YSKNLSEDILGKTVI-DNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFLSE 169 + + S L + D + +++ +A D ++ I + Sbjct: 116 FIVSKSGKFLQGYGLDDQGNRLPIGNLAVSQKESPPKATEDIDLSFNIDSREDPTTLTFP 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 A + + ++ + + V S T Sbjct: 176 YDKDTPASFTYSTTVRTFDSLGNEHTIKYNMVERRPTKDVYSVTTASTAVRISGVTVDPT 235 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-----GKIKALLQIRDSVVP 284 + + + + G V+S + + + + P Sbjct: 236 DGFSAAEIASIEAADSRIDGATLSYSGGVMSFEIKAKYSDYGDVVIEDVSGTPTDITPAP 295 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 ++ + L + + P + V + + Q + I Sbjct: 296 TERDANEVRLYDLAVPSAAQSPATIDVSGVSIVVTDSMSELDMANTIQAREQEILDRNPA 355 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + S + G + + + + ++ + Sbjct: 356 IESVSVIDAGSGNYQISIRFKAEQGNINPTSYPISITPTGYTGMSLNSTVDGDNGFQGMY 415 Query: 405 R 405 R Sbjct: 416 R 416 >gi|34498338|ref|NP_902553.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34104192|gb|AAQ60551.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] Length = 260 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 55/215 (25%), Gaps = 2/215 (0%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 P G++ + +R+ ++ + + F Sbjct: 48 TLRQPGGQLANGNANPTGLQVGTGAAAVASSRIFTQGPPQQTGQPLDLQIQGDGFFRLLQ 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + N + + + + + Sbjct: 108 PDGTTAYSRNGQFQRDANGNVVNPDGLPLNPNINIPATAQQITVSSAGVVQYTLAGSAAP 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + L N +L+ S I + + VN Sbjct: 168 QTAGTILLTTFINPQGLQSIGNNL--YLQTAASGDPQDGNPQTDDRGAIKSGFLESSNVN 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + EEL +I ++S+ ++++ + D+MLQ L Sbjct: 226 VTEELVNMITAQRSFEMNSRAVTTADQMLQKLSNL 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 31/241 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A+ + + Q + N+ N + + + + Sbjct: 1 MMRALYIAKTGMDTSQFQLDVVSNNLANVNTVGFKKSRGIFEDLYYQTLRQPGGQLANGN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + V T + + + Q F L + + Sbjct: 61 ANPTGLQVGTGAAAVASSRIFTQGPPQQTGQPLDLQIQGDGFFRLLQ------PDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160 + + N L + A +++ + A + I Sbjct: 115 SRNGQFQRDANGNVVNPDGLPLNPNINIPATAQQITVSSAGVVQYTLAGSAAPQTAGTIL 174 Query: 161 --SNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + N + + D + D R + E ++ N + Sbjct: 175 LTTFINPQGLQSIGNNLYLQTAASGDPQDGNPQTDDRGAIKSGFLESSNVNVTEELVNMI 234 Query: 218 V 218 Sbjct: 235 T 235 >gi|288940411|ref|YP_003442651.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] gi|288895783|gb|ADC61619.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] Length = 263 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 2/177 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + F + + + S + + + + + Sbjct: 81 FAQGNYIQTGNSLDMAIEGQGFFQILMPGGEIGYTRDGSFQLNADGEVVMSNGYALQPAL 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 V ++ I +A L N + E S Sbjct: 141 VIPADAESITIGKDGTVSIKQPNQVGEVQIGQIQLANFINPAGLQPIGENL--FRETTAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + F + + T VN+ EEL +I+ +++Y +++K I D MLQ Sbjct: 199 GAPQQSNPGENGFGSLVQCSLETSNVNMAEELVNMIETQRAYEVNSKAISAADSMLQ 255 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 38/183 (20%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + + N+ N + + + + Sbjct: 1 MNQALWIAKTGLDAQQTRMSVVSNNLANVNTTGFKKGRAVFEDLIYHSCRQHGAQATQET 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P +T+ T +++ Q F + Sbjct: 61 QLPSGLTIGTGVRTVATQKLFAQGNYIQTGNSLDMAIEGQGFFQIL------MPGGEIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + L ++ A+ K + +I Sbjct: 115 TRDGSFQLNADGEVVMSNGYALQPALVIPADAESITIGKDGTVSIKQPNQVGEVQIGQIQ 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|209966998|ref|YP_002299913.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] gi|209960464|gb|ACJ01101.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] Length = 655 Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 46/421 (10%), Positives = 89/421 (21%), Gaps = 23/421 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------ 54 MS+ A S+ I NI N+ Y R +T Sbjct: 1 MSVFGAMTTAVGGLTAQSRSLGHISDNIANSQTIGYKRVETSFQNLITQSNSSVHSPGGV 60 Query: 55 -QRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDS 110 R N + A F + +E+ + + + Sbjct: 61 RARPSYTNNIQGNVSQTQFATNMAISGSGFFQVSRGEEVSGTVNFQSQAYFTRAGDFSLD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISNLRRFLS 168 Y +N + L + + VV+ VQ++ + A I L + Sbjct: 121 KNGYLRNSAGYYLNGWGLRSGTNVVERGTPQPIRVQQLIDNPTATTNINLTANLPLTPNP 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 E + I + L+ R + ++ T + ++ Sbjct: 181 EQPLPTSEINIIDRNGETRTVNLNWRKQGDNNWRLDVEAPGSSLQPVGDLLSTGNPQSIG 240 Query: 229 ETVPRDINFEK---------MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 V + + T I I+ + S + L + Sbjct: 241 PEVQIIPSTTPVQQVSTASFSAATPTTGTDYSITINNKTFTYKAQSYDTNASVAGQLVNQ 300 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC--QGISET 337 F N + A Q + Sbjct: 301 IYADGSFTNYTFAIDPATSAITVTGPTEGTQFTFKASYDAAAATPTTAGVPGVKQQVFLP 360 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + GG + N N A ++ Sbjct: 361 LSGIAGDVGDEFTIPFGGGTESVSYLTDGTEPDLKTIATKLASKINSNNDSPYTATVSGA 420 Query: 398 V 398 Sbjct: 421 G 421 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 34/393 (8%), Positives = 104/393 (26%), Gaps = 8/393 (2%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-----AREVQK 147 + S T +SY N S I A V Sbjct: 266 TTGTDYSITINNKTFTYKAQSYDTNASVAGQLVNQIYADGSFTNYTFAIDPATSAITVTG 325 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + V + A D D+ + +E + Sbjct: 326 PTEGTQFTFKASYDAAAATPTTAGVPGVKQQVFLPLSGIAGDVGDEFTIPFGGGTESVSY 385 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 T + + T + + + + + Sbjct: 386 LTDGTEPDLKTIATKLASKINSNNDSPYTATVSGA-GLMLTRKDFTAPVAANNGMGAYTT 444 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G+ A + ++ + ++ S ++ + +G +++ Sbjct: 445 TGGQTPAHVSVQFGEGGVLKSLTSTNVGSGNAQVSATQAEGDDAFITFTVDYGNGPQEIR 504 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + S + N + + + +++ +Y + ++ Sbjct: 505 LNIGKFGSSVNGLTQFAGENIETFNLTQDGFTRGAFRDLTILASGEVVANYDNGRSRVLA 564 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 P+ ++ + + + ++ S + + ++ S V++ +E Sbjct: 565 QIPIFQVSNPNGMQK--TDGNAYVATTDSGAVRASGAGENGAGNLVVSSIEGSNVDIADE 622 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI +++Y+ + +++ + ML +L + Sbjct: 623 FTKLIVTQRAYSANTRVVTSANDMLVEVLNLGR 655 >gi|330975977|gb|EGH76043.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 581 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 35/364 (9%), Positives = 93/364 (25%), Gaps = 15/364 (4%) Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174 + + ++ + +++ + + + K+ + + + + + + +N Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQVNGAWAANGSLN 290 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 + A V+ + + + G +F++ Sbjct: 291 GGAVSLPLNDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 343 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 ++ T+ + N S P + A + ++ Sbjct: 344 HELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLS 400 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + I + GI+ Q+ + S Sbjct: 401 SNGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAY 458 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + L + + K+ +A L R+ Sbjct: 459 VDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRGTATA 516 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + I V L +EL LI+ + +Y ++K I ++QT Sbjct: 517 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 576 Query: 475 LLEG 478 L++ Sbjct: 577 LIQS 580 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 29/447 (6%), Positives = 96/447 (21%), Gaps = 18/447 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ ++Q ++ ++ + L + F Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178 Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + ++ + + + + ++V + P Sbjct: 179 DDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQL 290 ++ E +++ N + V + + + L Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQVNGAWAANGSLNGGAVSLPL 298 Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350 ++ L+ N L + QG + + S+ Sbjct: 299 NDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358 Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 + + +++ + ++ T + L ++ Sbjct: 359 RMHALIDDRNPQNSASTTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVD 418 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYS 437 R I + Sbjct: 419 PGTARERWISNGAAGSADGITIDFTRL 445 >gi|225871934|ref|YP_002753388.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] gi|225793054|gb|ACO33144.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] Length = 409 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/475 (7%), Positives = 93/475 (19%), Gaps = 68/475 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + F+ +S +I N+ N + + + + Sbjct: 2 SSFSIPLTGLEASSTSLDTIANNLSNMNTTAFKSQQASFG---------------DLFYQ 46 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 ++ ++ S + A + ++ + Sbjct: 47 QIGNSGSGDPLEVGAGVQVAATNTNFTQGTVSETGNATDVALNGSGFFVVRNSDGTPAYT 106 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + T Sbjct: 107 RDGNFTLTSSGDL-------------------------------------------TTQG 123 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 A + ++ S + I V G T + + Sbjct: 124 GQAVMGYPAANGVVNTNSALSPIQIPVGQVEQPQASQKFGLTANLNSSAAVGTNFSATVP 183 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 V + + Q D ++ + + Sbjct: 184 TYDSLGQTQDVTVNFTKTATNTWSYSLALPAGASTGGTGLTGTLQFDNNGNLISPAANVS 243 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + N Q + + + Sbjct: 244 GISFTGLTDGASNMNLNWNLYGSNGT--------STISQVDTTSGYSGTTTDGYPSGQYT 295 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + + + + +A I L N + S S + + Sbjct: 296 GFTIGADGTVSAQFSNGQTQAVGQLALASITNEQGLQLDGGNL--YQTTLASGSASIGLA 353 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +S VN+ E S L+ + +Y S+K + D++ Q + + Sbjct: 354 GSAGLGTVQDSALEGSNVNISTEFSNLVVAQNAYEASSKALTTFDQVAQDTINII 408 >gi|281600495|gb|ADA73479.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] gi|332761421|gb|EGJ91705.1| flagellar hook protein flgE [Shigella flexneri K-671] gi|333019459|gb|EGK38742.1| flagellar hook protein flgE [Shigella flexneri K-304] Length = 379 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 37/378 (9%), Positives = 77/378 (20%), Gaps = 9/378 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + +Q A K + S+ A Sbjct: 116 LTGYPVTGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNA 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 ++ + D + NN + S + F + Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGT 235 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + +N I + + + G + + D V + I + Sbjct: 236 LVDGAMANNIATGANNIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLAN 295 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + SE + N ++ L Sbjct: 296 FANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQ 355 Query: 363 WNVKNLAGYPDLINHYCD 380 N K+ A + + Sbjct: 356 RNYKSNAQTIKTQDQILN 373 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 44/390 (11%), Positives = 104/390 (26%), Gaps = 13/390 (3%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 S N+ + + +++ + + + A V A Q Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + +V+ + + R++L + ++ G Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFK-LDENRNLLNTQGLQLTGYP 120 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 ++ T+ + + S+P+ +SN S Sbjct: 121 VTGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNADSYNK 180 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 KG + V Q +M+ + + + + P N Sbjct: 181 KGSV---------TVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFN 231 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + N +N + + + K + ++ + + + Sbjct: 232 ANGTLVDGAMANNIATGAN-NIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQ 290 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A N L N W S L F ++ V+L +EL Sbjct: 291 IVLANFANNEGLASEGDNV--WSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKEL 348 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I +++Y + + I D++L T + Sbjct: 349 VNMIVAQRNYKSNAQTIKTQDQILNTRVNL 378 >gi|254445900|ref|ZP_05059376.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] gi|198260208|gb|EDY84516.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] Length = 260 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 2/162 (1%) Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + L +N + + + + Sbjct: 101 FFRVTGPDNETLYTRDGAFKVGPTGEVTNSQGMTAIDFAAPPAGTTKVVINDTGGVTYLA 160 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 DS A + LL N + E + S + + + + Y Sbjct: 161 DDSDVLGRGQLQTARFRNSSGLLALGGNL--FRETDASGAPTVGNPGADGSGTLQQGYLE 218 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T VN+ EE+ +I +++Y I++K I +D M+Q + + + Sbjct: 219 TSNVNIVEEMVNMILAQRAYEINSKSIQTSDSMMQQVAQLKR 260 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/161 (8%), Positives = 25/161 (15%), Gaps = 26/161 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + A + I NI N + + Sbjct: 1 MSISLYSAASGMEAQQTNLNVISNNIANVSTTGFKKSKVEFQDMFYQVPKSVGADSGGNI 60 Query: 47 -PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 P + V T + + + F + N + Sbjct: 61 LPTGIQVGTGTQVVSTSKVFTQGQVSQTGEQLDVAIVGDGFFRV------TGPDNETLYT 114 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + N A N + Sbjct: 115 RDGAFKVGPTGEVTNSQGMTAIDFAAPPAGTTKVVINDTGG 155 >gi|153940920|ref|YP_001391955.1| flagellar hook protein flgE [Clostridium botulinum F str. Langeland] gi|152936816|gb|ABS42314.1| flagellar hook protein flgE [Clostridium botulinum F str. Langeland] gi|295319974|gb|ADG00352.1| flagellar hook protein flgE [Clostridium botulinum F str. 230613] Length = 345 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/326 (10%), Positives = 81/326 (24%), Gaps = 21/326 (6%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + + F Q +S+ + +T N G + Sbjct: 20 DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTK 79 Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF-QNQ 289 T + + FI G ++Q S + + A D + Sbjct: 80 FTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEATGDAQAGSIDGKSSTMDISF 139 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL--CQGISETICVNPQYRSN 347 + + L + D + ++ Sbjct: 140 TRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGTGEAKMAFVDADSKALKAAD 199 Query: 348 PSFLRDGGSVSKKFLWNVK-------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 S + + + K ++ L+ + + +A L Sbjct: 200 DSKKLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGL 259 Query: 401 LEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 + +N + ++ + + V+L EE + +I Sbjct: 260 EKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAEEFTEMIVA 319 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ K+I D++LQ L+ + Sbjct: 320 NRAFQACGKMITTGDEILQELVNLKR 345 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 14/209 (6%), Positives = 36/209 (17%), Gaps = 46/209 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE--------------- 84 V V + + F Sbjct: 61 GTNPRQVGLGVQVAGI---YTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIIT 117 Query: 85 -----ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 A + + E + + + ++ Sbjct: 118 EATGDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYD 177 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLS 168 E + DAD + + ++ + Sbjct: 178 AGTGEAKMAFVDADSKALKAADDSKKLIP 206 >gi|227815505|ref|YP_002815514.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. CDC 684] gi|227007204|gb|ACP16947.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. CDC 684] Length = 202 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 36/105 (34%) Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 ++ + + + ++S + + I + Sbjct: 98 MKISAETANKLAAITDGNYKEGLSYKQALDQFVVGVASDKSAVNAYQKIHVDLLEGIQQE 157 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 158 KMGIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 202 >gi|206890777|ref|YP_002249848.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742715|gb|ACI21772.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 262 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 6/185 (3%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGG 355 + + + + + D + + ++ ++ + G Sbjct: 81 FTPGDLINTGNDLDLAIDGDGFFQVTLPDGTIAYTRAGNFRIDKDGRIVTNDGYPIEPGI 140 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 +V G ++ + + +A L RN +LE + Sbjct: 141 TVPADATKITFGADGTVTVLQPGTVAPVQ-IGTVELARFINPGGLQAIGRNL--FLETDA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I + + VN+ EEL+ +I +++++I++K + +D+MLQT+ Sbjct: 198 SGTPTTGTPGTEGRGKIVQGFLEMSNVNIVEELANMIIAQRAFDINSKAVQTSDEMLQTV 257 Query: 476 LEGVK 480 + Sbjct: 258 AALKR 262 Score = 68.5 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 12/152 (7%), Positives = 25/152 (16%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L A I N+ N + + + Sbjct: 1 MLRSLFTASTGMYAQQLNLDVISHNLANVNTTGFKKGRAEFQDLLYQNVINPGAPSDDGT 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V K L + + F + Sbjct: 61 QYPSGIQVGLGVRPVAVAKFFTPGDLINTGNDLDLAIDGDGFFQV------TLPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 R + + + A+ Sbjct: 115 TRAGNFRIDKDGRIVTNDGYPIEPGITVPADA 146 >gi|37525843|ref|NP_929187.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785272|emb|CAE14213.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 260 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 2/161 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 F + D + + S N Q + FL ++ + + Sbjct: 102 FFQVQLPDGTSAYTRDGSFQEDQNGQLTTANGFLIFPTITIPDNATDLTISSDGIVSVKV 161 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 S + + + L N ++E + S + + Y Sbjct: 162 QGQSVPQQVGQFTLTTFINDSGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYV 219 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 T VN+ EEL +I+ +++Y +++K + +D+MLQ L + Sbjct: 220 ETSNVNIAEELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 28/142 (19%), Gaps = 33/142 (23%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAIFEDLLYQNIRQPGAMSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ + F ++ Sbjct: 61 RLPSGLQIGTGVRPVATERIHSQ---GNLSETNNSHNVAIRGKGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSE 120 S ++ + Sbjct: 112 SAYTRDGSFQEDQNGQLTTANG 133 >gi|238755322|ref|ZP_04616665.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] gi|238706458|gb|EEP98832.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] Length = 260 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D N + S + N Q + F ++ Sbjct: 94 DIAIKGQGFFQVQLPDGTNAYTRDGSFQMDQNGQLVTASGFQVQPAITIPANALSITVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + + L N + E S + + Sbjct: 154 DGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETASSGAPNESTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVTTSDQMLQKLTQL 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGQGFFQVQLPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S + + A + Sbjct: 118 GSFQMDQNGQLVTASGFQVQPAITIPANAL 147 >gi|226327742|ref|ZP_03803260.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198] gi|225203446|gb|EEG85800.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198] Length = 111 Score = 75.1 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + + L N +LE S + + + + Y T VN Sbjct: 19 QQVGQLTLTTFINDSGLESVGENL--YLETASSGAPTENAPGINGAGLLYQGYVETSNVN 76 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 77 VAEELVNMIQTQRAYEINSKAISTSDQMLQKLTQL 111 >gi|270262399|ref|ZP_06190670.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] gi|270043083|gb|EFA16176.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S I N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRDGSFQIDQNGQLVTASGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + + L N + E S Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETESSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S + + A + Sbjct: 118 GSFQIDQNGQLVTASGFQVQPAITIPANAL 147 >gi|222053611|ref|YP_002535973.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] gi|221562900|gb|ACM18872.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] Length = 293 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 51/200 (25%), Gaps = 4/200 (2%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + V Q +KD N + L A + + V Sbjct: 98 TTVAPVAAQNAAFLSRAGAFHVDKDLYLVNPDGYQVLDTAGQPIRFYTGGTADQNFSKVV 157 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + ++L G + + D +L Sbjct: 158 KVEPNGLITYLAQDGITNLYYSTTGVAGLPTTTANAAAVQRLAVVSATDLSGLEKAGGSL 217 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + + + + V+L + +I +++Y+ Sbjct: 218 YKA----TATSGVSAAGFTLAGNQPNGTSEKVLSNSLEQSNVDLASQFVKMIITQRAYSA 273 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K I D+M Q +L + Sbjct: 274 NSKTITTADEMTQEVLNLKR 293 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 33/152 (21%), Gaps = 10/152 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52 MS+ + + N + I NI N + + + + Sbjct: 1 MSITSAMFTGVSGLLNNGEAMNVIGNNISNVNTVGFKGARMLFSDMLSQNIGNNSQIGRG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDS 110 + + + + SF ALK ++ N + Sbjct: 61 MQIQKVENLFGQGSFESTENVTDLGIQGNSFFALKPPTTVAPVAAQNAAFLSRAGAFHVD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 + Y N + T Sbjct: 121 KDLYLVNPDGYQVLDTAGQPIRFYTGGTADQN 152 >gi|315636308|ref|ZP_07891558.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] gi|315479397|gb|EFU70080.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] Length = 723 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 40/396 (10%), Positives = 104/396 (26%), Gaps = 21/396 (5%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + L + N + D L A + + +++ + + +I + Sbjct: 333 NSGSGGMVAYLAKNTSNPTLDTLDPNGTYEASTEISDMLQGVIQIKSLIPGTEFKITE-V 391 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---NNDM 217 S D RD L + ++ ++ + Sbjct: 392 SETTTGTDTTVKGTYQSTATAVMGTGKAALEDARDALSRLVTGNQQSVYTTQDLYGDATA 451 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVT----------SESNPIFIDGVVVSSNQGSAV 267 T + +D+ ++ + + +D +V N + Sbjct: 452 ATSTREYKFSITIYDKDLGYDIPVPNDGNVPPNAVPIVINAGTGVTLDDIVTEINNQTTA 511 Query: 268 PKGKIKALLQIRDSV---VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 ++ + ++ V + ++ ++++ + + + Sbjct: 512 SGPQLGDYITAKNVNGYLVIETNDGNYDVEFDAALTYTDPTNPTTPVTDDTLIEVNPDYS 571 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + T V+ + LR + ++ LI Sbjct: 572 GRKGAGAEFMEITTRVDQTSTQSSLQLRLDKLGISDSKFGSFSVDETG-LITITEGGVQY 630 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A N LL N + S + + +L Sbjct: 631 AVGQVSIARFTNNQGLLAVGNN--NFQATQESGKAIYSTNNNNTAG-MQGKTLELSEADL 687 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E L L+ ++++ + K I D+ML TL+ + Sbjct: 688 SESLVNLMVFQRAFEANAKSITTADEMLTTLINLKR 723 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 35/439 (7%), Positives = 93/439 (21%), Gaps = 14/439 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + + + + N+ N + Y + Sbjct: 1 MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQNQIGKGSYVQDAE 60 Query: 62 --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + F + + LR + Sbjct: 61 KLFTQGSMKVTGVDYDVALQGDGFFTVINK--NTLGTAETFYTRAGNLRMGDSGTLQTAD 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + +E + ++ + + K I+ I ++ + + Sbjct: 119 GYEVQGWAMSSIDE-KNDVISTNSNATRFTSAFTKNIDSAIIKHNDYIETIAAKTTNVDE 177 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T S A + K S++ I +N + Y D + ++ Sbjct: 178 TTKSDSTAVFSGAGQ---KTKASKLKDIELATENYSNLLTKYQEDPDASSKGSISQVSQV 234 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + D + V N + + + + + + + L+ Sbjct: 235 NFRTGVPPTSIIGKEGDSIKVVINGNTYTQPFVVTKSTETYRTDIWNSLDATERTLYGLV 294 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 I+G IA K N ++L S Sbjct: 295 D----PATISGLPAANQEAEIAKYDKIAGKIETYKAMADKISNSGSGGMVAYLAKNTSNP 350 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + I+ + P +S + Sbjct: 351 TLDTLDPNGTYEASTEISDMLQGVIQIKSLIPGTEFKITEVSETTTGTDTTVKGTYQSTA 410 Query: 419 HDLHMKSQVVFNHISESYS 437 + + ++ S Sbjct: 411 TAVMGTGKAALEDARDALS 429 >gi|229132566|ref|ZP_04261415.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196] gi|228650912|gb|EEL06898.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196] Length = 407 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 3/183 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADG-IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F E G+ ++ + + + Sbjct: 227 TEFKEVQGAGGDVTFDAVGKPNQQKPGASIPFNGGTVNLDFSKLTNHPTEKTLAVTDVDG 286 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +A ++ Y D K VA L++ + N + Sbjct: 287 RAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKNGNG--NYTATNTTG 344 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Q + S V+L E L+ ++ + + K+I +D++L ++ Sbjct: 345 ILAMGVSGQNGAGKVRGSAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 Query: 478 GVK 480 ++ Sbjct: 405 LIR 407 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/282 (8%), Positives = 56/282 (19%), Gaps = 38/282 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ + N + NI NA Y ++ M Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGSKGDDKYAG 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + D + F + + + Sbjct: 61 TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNTE----- 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + Y N + + A V + +Q A I Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANAATGEVDL-SGIPGPLQIPMGSAIGGIRTSK 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + + + + + + Sbjct: 172 GVVGGNIPADAKQITQELPAYDDAGNTWTMRVEFTQ-TSEHNYKYTVHMRNDSKKETEFK 230 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 G D+ F+ + I +G V+ + Sbjct: 231 EVQG------AGGDVTFDAVGKPNQQKPGASIPFNGGTVNLD 266 >gi|226939372|ref|YP_002794445.1| flgG [Laribacter hongkongensis HLHK9] gi|226714298|gb|ACO73436.1| flgG [Laribacter hongkongensis HLHK9] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 2/195 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ + R ++ A + F + D + + + Sbjct: 65 GLLVGTGAAPVAVDRQFSPGNLQQTNNALDMAINGRGFFTIQMPDGTIGYTRDGTFKLDD 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Q ++ FL D + ++ + + + +A L Sbjct: 125 QGQLVTSQGFLVDPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQLADFINPQGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N +LE S + + + I +++ VN+ EEL +I+ +++Y + Sbjct: 185 EPIGGNL--YLETAASGAPTVANPTNDGTGAIQQTFLEASNVNVTEELVEMIQAQRAYEL 242 Query: 461 SNKLIMFTDKMLQTL 475 +++ I +D ML L Sbjct: 243 NSRGIKTSDDMLARL 257 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 52/234 (22%), Gaps = 31/234 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L ++ +++ + I N+ N + + + + Sbjct: 1 MLRSLYISKTGMDSSQFRLDVITNNLANVNTTGFKKGRAVFEDLMYQTIRQPGAQSSQNT 60 Query: 46 -SPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T + ++ L ++A+ + F ++ Sbjct: 61 MLPTGLLVGTGAAPVAVDRQFSPGNLQQTNNALDMAINGRGFFTIQ------MPDGTIGY 114 Query: 102 HYISKLRDSLESYSKNLSE---DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + D V + + Sbjct: 115 TRDGTFKLDDQGQLVTSQGFLVDPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQ 174 Query: 159 EISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + E N + + + A+ D + Q E ++ Sbjct: 175 LADFINPQGLEPIGGNLYLETAASGAPTVANPTNDGTGAIQQTFLEASNVNVTE 228 >gi|124268252|ref|YP_001022256.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261027|gb|ABM96021.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + F + D + + + Q +N ++ Sbjct: 76 ATSRQFSQGSLQQSTNPLDLAVKGQGFFQIQLPDGTTGYTRDGAFQVSAQGQLVTNNGYV 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G NV A + + + +A L N Sbjct: 136 VQPGITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQLASFVNPAGLEPRGENLYT-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + I++ + VN+ EEL +I+ +++Y +++K I +D+M Sbjct: 194 ETAASGTPNAGAPDSNGLGAIAQGFVEGSNVNVVEELVAMIQTQRAYELNSKAIQTSDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQKLAQL 260 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/180 (7%), Positives = 40/180 (22%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ Q I N+ N+ Y R + Sbjct: 1 MMRSLWISKTGMEAQQTQLDHISHNLANSATNGYKRSHAVFEDLMYQTIRQPGANSSEQT 60 Query: 46 -SPENVTVVTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + ++ L ++ + Q F ++ + Sbjct: 61 QLPTGLQLGLGTRAVATSRQFSQGSLQQSTNPLDLAVKGQGFFQIQ------LPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S + + ++ + A + A + +I Sbjct: 115 TRDGAFQVSAQGQLVTNNGYVVQPGITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQ 174 >gi|157371205|ref|YP_001479194.1| flagellar basal body rod protein FlgG [Serratia proteamaculans 568] gi|157322969|gb|ABV42066.1| flagellar basal-body rod protein FlgG [Serratia proteamaculans 568] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S N Q + F + Sbjct: 82 SQGNLSQTNNSKDIAIKGQGFFQVMMPDGTLAYTRDGSFQRDQNGQLVTASGFQVQPAII 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + + L N + E S Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESMGENL--YQETESSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F + Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQ---GNLSQTNNSKDIAIKGQGFFQVM------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S + +I A + Sbjct: 112 LAYTRDGSFQRDQNGQLVTASGFQVQPAIIIPANAL 147 >gi|322832566|ref|YP_004212593.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] gi|321167767|gb|ADW73466.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 2/179 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + F + D + S + N Q ++ + Sbjct: 81 FSQGNLSQTSNSKDIAVKGEGFFQVQLPDGTTAYTRDGSFQVDQNGQLVTSSGYQVIPAI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + + + ++ N L N + E S Sbjct: 141 TVPANALSMTVGRDGIVSVTTQGQTAAQQVGQLTLSTFINNSGLESLGENL--YQETQSS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L Sbjct: 199 GAPTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDEMLQKL 257 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIPSLYIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ L S++ + F ++ Sbjct: 61 NLPSGLQIGTGVRPVSTERL---FSQGNLSQTSNSKDIAVKGEGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + S + + A + Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGYQVIPAITVPANAL 147 >gi|254755230|ref|ZP_05207264.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. Vollum] Length = 239 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 36/105 (34%) Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 ++ + + + ++S + + I + Sbjct: 135 MKISAETANKLAAITDGNYKEGLSYKQALDQFVVGVASDKSAVNAYQKIHVDLLEGIQQE 194 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 GVN++EE+ L+ ++ + ++K I +++ +L ++ Sbjct: 195 KMGIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 239 >gi|268589980|ref|ZP_06124201.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] gi|291314698|gb|EFE55151.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] Length = 260 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ K + F+ + D + + + + Q ++ + Sbjct: 76 ATMRIHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + ++ I Y D+ + + + L N ++ Sbjct: 136 IVPAIMIPDNANSLSIARDGTVTITVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + ++ T VN+ EEL +I+ +++Y I++K + +D+M Sbjct: 194 ETASSGAPNESAPGTNGAGLLYQNMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44 >gi|187778772|ref|ZP_02995245.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] gi|187772397|gb|EDU36199.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] Length = 266 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 44/193 (22%), Gaps = 24/193 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 M LL +++ + SI N+ N + Y R D Sbjct: 2 MILLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSD 61 Query: 48 -----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V +L + Q F + N Sbjct: 62 RPEIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYE 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + L + A + N + A+ ++ Sbjct: 116 RSGNFVIDRNGMLVDENGNRLEIQLQQPAGSQILNRIGGFNKNNINIAEDGSISAKDVDG 175 Query: 163 LRRFLSELTVVND 175 + + + ++ + N Sbjct: 176 INKMIGKINIYNA 188 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + + + RN + Sbjct: 153 GGFNKNNINIAEDGSISAKDVDGINKMIGKINIYNAVGSDAFVSIGRNLY----IPQEGV 208 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + V+ +E++ +I ++++ +S++ I D+M Sbjct: 209 NVFVNNDVSMLQ----GFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEM 257 >gi|222823151|ref|YP_002574724.1| flagellar hook protein FlgE [Campylobacter lari RM2100] gi|222538372|gb|ACM63473.1| flagellar hook protein FlgE [Campylobacter lari RM2100] Length = 814 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 S + G + + + + +A N+ L Sbjct: 678 YDKDSATTKQETDGYTGGNLKPDALRTDENGYIYGEFTNGKTLALAKVALATFPNNMGLE 737 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 E N + S + + + + S V+L L+ LI +++ Y + Sbjct: 738 EMGNNL--YKATANSGTATIGHAGEGGRGGLKGSAIEMSNVDLSRALTELIVIQRGYQAN 795 Query: 462 NKLIMFTDKMLQTLLEGVK 480 +K I +D++L TLL+ + Sbjct: 796 SKTITTSDQLLNTLLQLKQ 814 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 28/422 (6%), Positives = 82/422 (19%), Gaps = 41/422 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + NI N + + + Sbjct: 1 MMRSLWAGVSGLQAHQYAMDVEGNNIANVNTFGFKYSRADFSTLMSQTSKIATAPDGNLG 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + + F + ++D Sbjct: 61 GKNPMQVGLGAGVNSTTRIHSQ---GNIQTTDKNTDMAINGDGFF-----IVSNDGGTTQ 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + + + + + V Sbjct: 113 FFTRAGDFKTDAVGNFVDNNGYTVQGWNYNQETGQIDSSKSVTDIVIPPGMSMPARPSSS 172 Query: 160 IS-----NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-----ST 209 +S + L I + D D +E Sbjct: 173 VSLTANLDSGNTLGTNASAKRPIYALDSLHGGRKDTGTTIDENDTGHTEFYTTSKSGAQV 232 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + VV+ + G L + I ++ ++ + + G+ Sbjct: 233 TEKGVDMGVVFNAQGEGLNLRDGQGIWVSYADAKHTSNATMATDLPTDPAQWTNGNHTFW 292 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G + D + + + + + + D Sbjct: 293 GYKDGGDAVLDITINGVHIRAEGVGKDTFLNAINAKTSETGVVASIVNNQFVFTNDNSTG 352 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 V Q + + + G + ++ A + + + N + + Sbjct: 353 TTAKSKNLNIVVNQGNTVGAQVTVGKGDTPGARLSLNRTAFNNNPMAAILGTNANNIMKN 412 Query: 390 PV 391 V Sbjct: 413 NV 414 >gi|294013086|ref|YP_003546546.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] gi|292676416|dbj|BAI97934.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] Length = 280 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 65/262 (24%), Gaps = 11/262 (4%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T V + S V + +G + Q Sbjct: 19 TTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRTQGISQQFTQGTIETTDK 78 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK---------LCQGISE 336 + S D I + + D + Sbjct: 79 TLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTGARLQVIPLDPTTGAPTV 138 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 T + P ++ + ++ + Y D +A N+ Sbjct: 139 TGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYADGSTVYLGATAIAAFNS 198 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + W N S + L + +F I V++ EEL LI ++ Sbjct: 199 QEGLRQSGDAH--WTATNASGAPMLGTGNSGLFGSIRSGALERSNVDITEELVNLISAQR 256 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 ++ ++K I + + T++ Sbjct: 257 NFQANSKAIEAANTLSTTIVNM 278 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 12/146 (8%), Positives = 35/146 (23%), Gaps = 15/146 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57 F + + A ++ N+ N ++ + + + + V R+ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ + + + F +K + + Y Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVK-----RSADDQIGYTRNGAFSVEEDRYV 116 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS 141 + + L +D T Sbjct: 117 VDTTGARLQVIPLDPTTGAPTVTGTL 142 >gi|157738165|ref|YP_001490849.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] gi|157700019|gb|ABV68179.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] Length = 723 Score = 74.7 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 40/396 (10%), Positives = 104/396 (26%), Gaps = 21/396 (5%) Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + L + N + D L A + + +++ + + +I + Sbjct: 333 NSGSGGMVAYLAKNTSNPTLDTLDPNGTYEASTEISDMLQGIIQIKSLIPGTEFKITE-V 391 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---NNDM 217 S D RD L + ++ ++ + Sbjct: 392 SETTTGTDTTVKGTYQSTATAVMGTGKAALEDARDALSRLVTGNQQSVYTTQDLYGDATA 451 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVT----------SESNPIFIDGVVVSSNQGSAV 267 T + +D+ ++ + + +D +V N + Sbjct: 452 ATSTREYKFSITIYDKDLGYDIPVPNDGNVPPNAVPIVINAGTGVTLDDIVTEINNQTTA 511 Query: 268 PKGKIKALLQIRDSV---VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 ++ + ++ V + ++ ++++ + + + Sbjct: 512 SGPQLGDYITAKNVNGYLVIETNDGNYDVEFDAALTYTDPTHPTTPVTDDTLIEVNPDYS 571 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + T V+ + LR + ++ LI Sbjct: 572 GRKGAGAEFMEITTRVDQTSTQSSLQLRLDKLGISDSKFGSFSVDETG-LITITEGGVQY 630 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A N LL N + S + + +L Sbjct: 631 AVGQVSIARFTNNQGLLAVGNN--NFQATQESGKAIYSTNNNNTAG-MQGKTLELSEADL 687 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E L L+ ++++ + K I D+ML TL+ + Sbjct: 688 SESLVNLMVFQRAFEANAKSITTADEMLTTLINLKR 723 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/439 (7%), Positives = 94/439 (21%), Gaps = 14/439 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + + + + N+ N + Y + Sbjct: 1 MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQNQIGKGSYVQDAE 60 Query: 62 --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + F + + LR + Sbjct: 61 KLFTQGSMKVTGVDYDVALQGDGFFTVINK--NTLGTAETFYTRAGNLRMGDSGTLQTAD 118 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + +E + ++ + + K I+ I ++ + + Sbjct: 119 GYEVQGWAMSSIDE-KNDVISTNSNATRFTSAFTKNIDSAIIKHNDYIETIAAKTTNVDE 177 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T S A + K S++ I +N + Y D + ++ Sbjct: 178 TTKSDSTAVFSGAGQ---KTKASKLKDIELATENYSNLLTKYQEDPDASSKGSISQVSQV 234 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + D + V N + + + + + + + L+ Sbjct: 235 NFRTGVPPTSIIGKEGDSIKVVINGNTYTQPFVVTKSTETYRTDIWNSLDATERTLYGLV 294 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 I+G + IA K N ++L S Sbjct: 295 D----PATISGLPAANQEVEIAKYDKIAGKIETYKAMADKISNSGSGGMVAYLAKNTSNP 350 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + I+ + P +S + Sbjct: 351 TLDTLDPNGTYEASTEISDMLQGIIQIKSLIPGTEFKITEVSETTTGTDTTVKGTYQSTA 410 Query: 419 HDLHMKSQVVFNHISESYS 437 + + ++ S Sbjct: 411 TAVMGTGKAALEDARDALS 429 >gi|311105937|ref|YP_003978790.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] gi|310760626|gb|ADP16075.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] Length = 261 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 2/132 (1%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + ++ ++ L G + N +A L N Sbjct: 132 SGYVIQPPMNIPDNALSISIGNDGIVSVTQPGAAGINVQIGQLQIATFINPTGLQSIGEN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +LE + S +L I + Y T VN+ EEL +I +++Y +++K + Sbjct: 192 L--YLETDASGPANLLQPGVDGAGSIMQKYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249 Query: 467 FTDKMLQTLLEG 478 +D+ML L + Sbjct: 250 TSDEMLARLTQL 261 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 55/246 (22%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R + Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + L+ S + + F ++ Sbjct: 61 QLPSGLQLGTGARVAATERIH---TAGNLNNTGSEMDIAINGRGFLQIE------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEI 156 L+ +S ++ + + + Q A + +I Sbjct: 112 QAYTRDGALQRDQNGQLTTVSGYVIQPPMNIPDNALSISIGNDGIVSVTQPGAAGINVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + L + + + +T + A+ D + + + S + Sbjct: 172 GQLQIATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAGSIMQKYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|189426330|ref|YP_001953507.1| flagellar basal body rod protein FlgG [Geobacter lovleyi SZ] gi|189422589|gb|ACD96987.1| flagellar basal-body rod protein FlgG [Geobacter lovleyi SZ] Length = 262 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/252 (9%), Positives = 63/252 (25%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N + + + V + + V F Sbjct: 11 GMNTQTQNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAAQIPVGIQFGM 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 A + + G + I+ D + ++ R Sbjct: 71 GSKLAAVSKQFTPGDFSNTGGQLDMAIEGDGFFQIQMPDGSTAYSRAGAFKMDSNGRVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + K G ++ + + N + Sbjct: 131 PEGYPMLPEIVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQIANFTNPAGLSSMGKN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + S + Q I++ + V++ E+ +I +++Y ++K I + Sbjct: 191 FYQQTDASGNATTGTPGQTGLGTITQGFLEMSNVDVATEMVNMIIGQRAYEANSKAITTS 250 Query: 469 DKMLQTLLEGVK 480 D+MLQ + Sbjct: 251 DEMLQLANNLKR 262 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 10/185 (5%), Positives = 30/185 (16%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ A + N +Q I N+ N + + + Sbjct: 1 MMRSLWTAASGMNTQTQNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAA 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + +K + F ++ ++ Sbjct: 61 QIPVGIQFGMGSKLAAVSKQFTPGDFSNTGGQLDMAIEGDGFFQIQ------MPDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ T + I Sbjct: 115 SRAGAFKMDSNGRVVTPEGYPMLPEIVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQ 174 Query: 162 NLRRF 166 Sbjct: 175 IANFT 179 >gi|315453484|ref|YP_004073754.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315132536|emb|CBY83164.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 262 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 68/261 (26%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 TT I+ N V + Q + Sbjct: 4 SLYSATTGMLGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTTKSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + ++ ++ + F + D + + I Sbjct: 64 NGIEVGLGVRTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKID 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + +L + + + S + +A Sbjct: 124 DQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N + + S + + + + + + V L EE++ LI +++Y Sbjct: 184 LHALGDNLLAV--TSASGPAIVGNPNGDGYGQLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKTIQTADNMLQTVNSLKR 262 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 11/183 (6%), Positives = 36/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + NI N + + ++ Sbjct: 1 MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTT 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V + + + + F ++ ++ Sbjct: 61 KSPNGIEVGLGVRTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQ------MPDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + +L + + + + + +I+ Sbjct: 115 TRAGNFKIDDQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQIT 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|325982369|ref|YP_004294771.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] gi|325531888|gb|ADZ26609.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] Length = 260 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + F + D + + + +N Q ++ ++ Sbjct: 76 ATESIFTQGIIQPTDNPRDVAIRGLGFFQVLMPDGTTAYTRDGAFQLDLNGQLVTSSGYM 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V V + +A L + N ++ Sbjct: 136 VQPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLGNIQLASFINPSGLQKMGENL--YM 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + + T V++ EEL +I+ +++Y +++K I +D+M Sbjct: 194 ETASSGTPNQNAPGTNGLGILDQGFVETSNVSVVEELVNMIQTQRAYEMNSKSIETSDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQKLAQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/261 (6%), Positives = 54/261 (20%), Gaps = 40/261 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + I N+ N + + R + Sbjct: 1 MIRSLWISKTGLEAQQTKLDVIANNLANVNTNGFKRSRAVFEDLMYQTLRQPGAQSSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V S ++ + F + Sbjct: 61 QLPSGLQLGTGVKPVATESI---FTQGIIQPTDNPRDVAIRGLGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 + + L S ++ ++ T + V Sbjct: 112 TAYTRDGAFQLDLNGQLVTSSGYMVQPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ----RDVLLQKISEIIGISTIV 211 S + + N ++ ++ + + D + S + + +V Sbjct: 172 NIQLASFINPSGLQKMGENLYMETASSGTPNQNAPGTNGLGILDQGFVETSNVSVVEELV 231 Query: 212 RNNNDMVVYTSDGTTLFETVP 232 Y + ++ + Sbjct: 232 NMIQTQRAYEMNSKSIETSDQ 252 >gi|254458078|ref|ZP_05071505.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] gi|207085471|gb|EDZ62756.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] Length = 262 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 57/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + + + N ++ + Sbjct: 76 AINKIFSEGSLKQTDNQLDVAITGRGFFKLELPDGTEVYSRNGAFKVDDNGSMVNSDGYK 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V ++ + + + L N +L Sbjct: 136 LVPEIVIPPDATDISIGTDGTVTVVQPGQTQATQIGQITLTNFINPAGLHSRGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + S + + + V L EL+ LI +++Y+ ++K+I +D+M Sbjct: 194 ETDSSGQPVEGTPGVDGLGVLRQGFVELSNVELVVELTDLITGQRAYDSNSKVITTSDEM 253 Query: 472 LQTLLEGVK 480 LQT + Sbjct: 254 LQTTNNLKR 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 52/212 (24%), Gaps = 29/212 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + + + + Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFSDLMYKVMSYAGTATSDVT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK + L + + + F L+ Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNQLDVAITGRGFFKLE------LPDGTEVY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N L ++ +A ++ + + VQ + A + ++ Sbjct: 115 SRNGAFKVDDNGSMVNSDGYKLVPEIVIPPDATDISIGTDGTVTVVQPGQTQATQIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 ++N + ++ +S Sbjct: 175 LTNFINPAGLHSRGDNLYLETDSSGQPVEGTP 206 >gi|170756722|ref|YP_001782271.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra] gi|169121934|gb|ACA45770.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra] Length = 344 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 26/329 (7%), Positives = 76/329 (23%), Gaps = 10/329 (3%) Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + I+N + + + +++ + ++ I Sbjct: 22 VGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTKFT 81 Query: 216 DMVVYTSD---GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + T+ + + + S T + + + + Sbjct: 82 TGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITESTGDVQAGSIDGKNSTMDISFTR 141 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN-SENVPGLFIADGIKDLDNKLC 331 + D + + M + A + + + + Sbjct: 142 DGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLTYAADGKATLAFVDADSKDLKAADDSK 201 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 + I I ++ L L SF + + Sbjct: 202 KLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGLEKM 261 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + + ++ + + V+L EE + + Sbjct: 262 GKNLYKNSANSGEAIIRTPRGTAEEN------RNDKGYGDMLNGMIEMSNVDLAEEFTEM 315 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +++ K+I D++LQ L+ + Sbjct: 316 IVANRAFQACGKMITTGDEILQELVNLKR 344 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 22/294 (7%), Positives = 60/294 (20%), Gaps = 15/294 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + + NI NA+ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + N + + + I Sbjct: 61 GTNPRQVGLGVQVAGI----YTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSII 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 T A + +T ++ + + L+ Sbjct: 117 TESTGDVQAGSIDGKNSTMDISFT-------RDGSFTLDDEGNLLTSDGFRIMGYAMTDG 169 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + D + L ++ + + + + D + R +F S Sbjct: 170 TGTSLTYAADGKATLAFVDADSKDLKAADDSKKLIPLRIPDEIDVDGKKVRVQSF----S 225 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 ++G + Q + L ++ ++ N + + R Sbjct: 226 IDKDGLLVASLVNGKSAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRT 279 >gi|33592481|ref|NP_880125.1| flagellar basal body rod protein FlgG [Bordetella pertussis Tohama I] gi|33572127|emb|CAE41669.1| flagellar basal-body rod protein FlgG [Bordetella pertussis Tohama I] gi|332381898|gb|AEE66745.1| flagellar basal body rod protein FlgG [Bordetella pertussis CS] Length = 261 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354 + S + G + ++ D ++ V+ + ++ Sbjct: 80 VFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPP 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +V L G + N VA L N +LE + Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQVATFINPTGLQSVGENL--YLETD 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S +L I + Y T VN+ EEL +I +++Y +++K + +D+ML Sbjct: 198 SSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257 Query: 475 LLEG 478 L + Sbjct: 258 LTQL 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 57/246 (23%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + Sbjct: 1 MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDAN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + ++ + + F ++ Sbjct: 61 QLPSGLQLGMGVQVAATQRV---FSQGNMNNTGGEMDIAIQGRGFLQVE------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ ++ V DNA + + + Q A + +I Sbjct: 112 QAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + L V + + +T S A+ D Q + + + S + Sbjct: 172 GQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|268317781|ref|YP_003291500.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] gi|262335315|gb|ACY49112.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] Length = 262 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A L N S L + F + + + V++ +E+ Sbjct: 175 LARFPNPAGLRAIGGNLYEQ--TEASGFPILGAPGEEGFGTVKQGFLEAANVDVVQEMVN 232 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y I++K++ T++MLQT + + Sbjct: 233 LITAQRAYEINSKMVTTTEEMLQTASQMKR 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 26/146 (17%), Gaps = 33/146 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A N +I N+ NA+ + + Sbjct: 1 MLRALRTAALGMNAQQTNVDNIAHNLANANTTGFKNARVVFQDLLYQTVQTPGQEEAEGL 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV L +A+ F + Sbjct: 61 TPPASLQLGSGVAVVATVR---QFTQGSLVETGNALDLAINGDGFFQI------RRPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILG 124 + + + L Sbjct: 112 IVYTRDGTFTLNADGTFVTQTGLPLE 137 >gi|30248324|ref|NP_840394.1| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718] gi|30138210|emb|CAD84218.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + ++ + F + D + + + Q + F Sbjct: 76 ATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQDGQMVTASGFP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 N+ + + + L + N +L Sbjct: 136 LQPSITIPPNTLNITIGRDGTVSVLTPGSALPVPVGNIQLTTFINPAGLQRFGENL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + +++ + T VN+ EEL +I+ +++Y I+++ I +D+M Sbjct: 194 ETMSSGVPNPGIPGTNGIGLLNQGFVETSNVNVVEELVEMIQTQRAYEINSRSISTSDQM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LARLTQL 260 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 29/153 (18%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + + I N+ N + R + Sbjct: 1 MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L + + F + Sbjct: 61 RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQIL------LPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + S L ++ + Sbjct: 115 TRDGAFQSDQDGQMVTASGFPLQPSITIPPNTL 147 >gi|330809244|ref|YP_004353706.1| flagellar hook protein FlgE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377352|gb|AEA68702.1| putative flagellar hook protein FlgE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 392 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 106/387 (27%), Gaps = 4/387 (1%) Query: 95 HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + L + + S + G A + + Sbjct: 7 NGMSGLFSFAKGLDNVSNNVSNMNTPGYRGSDTFYRAVNGQDGQSFGSGIAGTQVRIKPG 66 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 E +N ++ + S A F +D L I+ I Sbjct: 67 ENRQTGNNTNVAINGAGYFVLRDEQGALSYTRAGQFEVDKDGYLVDTISQQRIAGIDSAG 126 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN-PIFIDGVVVSSNQGSAVPKGKIK 273 N + TL + + T T+E+ I V S+ + Sbjct: 127 NLRDINIQGQRTLPPQATTRVEMVGALARTGTTEATHQINAIQVFDSTGASHTLSVKFEP 186 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 V + ++ I + P AG + L + ++ + Sbjct: 187 KTTPANSWSVTVSDASGAQLQTGTIAFGVDGSPSAGFNTLSVPLTVNGQVQSIVLDFGTP 246 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 S + + + S N L Y + ++ +A Sbjct: 247 GSFNLASQVASGPSHTLGARVVDGSAVAGLNSFAFDEKGILKFTYANGEKRDGSQLALAD 306 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L+ A + S + + F I Y V+L +E ++ Sbjct: 307 FADESALIAGANSLYH---TPSSMKAEFGRAGEKQFGRIQGGYLELSNVDLAQEFGDILI 363 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ Y S++++ +++ML+ L G + Sbjct: 364 IQRGYQASSRVMTVSNEMLEQLYNGTR 390 >gi|302670727|ref|YP_003830687.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316] gi|302395200|gb|ADL34105.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316] Length = 1049 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 63/240 (26%), Gaps = 11/240 (4%) Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 ++ +S + ++ S G I A+ D + Sbjct: 821 DNTPGSSNYGAMTLNVGKHSITLEFKPENGVIGAV----DGNTDAAMTVDLHFDQTEGYG 876 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 A + + D + + + S + Sbjct: 877 LEPFGFQASATNADEQDRAGNITIDFSTVTNYNTNGSSTIKAVKGDKKSL----NTGRAV 932 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 N +++ + Y + K A L + N S Sbjct: 933 GEMNGVSISTDGQIYATYSNGQTKLLGQIASAEFANASGLSKEGDNLYA--STLNSGEAT 990 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + +++ V+L + + +I ++ + ++++I +D +L+ L + Sbjct: 991 VQDITTDG-GYMNTGVLEMSNVDLSSQFTEMITTQRGFQANSRIITVSDTLLEELTNLKR 1049 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 34/454 (7%), Positives = 94/454 (20%), Gaps = 22/454 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48 ++ + I NI N + ++ + + Sbjct: 1 MMRSLYSGVAGLKTHQTKMDVIGNNIANVNTTSFKSQSITFSDLMYQTTQTASGATETKG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V K+ A E ++ N + Sbjct: 61 GVNARQIGLGAKSGAINTAITSQGATQTTNNPFDIMITGESFFIVNNGNENLYTRDGSFY 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 S L + + S E+ ++ + + ++ L Sbjct: 121 VDGAGNLAMQSNGYLVQGWKAVEDRDTGEITISKGELTGLQIMSPENSTYSPASTTSSLF 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN--NDMVVYTSDGTT 226 + + + L + + + S+G + Sbjct: 181 SGNIDDFDSNLTSDDGKTITLEFYDNKGYLYTGKFTLKDTETEHLFALTLTDIIDSNGKS 240 Query: 227 LFETVP-----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 + + I + S++ + V S + + K ++ + Sbjct: 241 INDNPEGIDRLSLITLGDQTNTKARSQTTKVQQGYTPVQSVDSTKITINKDGGDIKYDNV 300 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 L A + + A + + + + + + I V Sbjct: 301 AKHGNLVDLMSSATTNAKTANLLQ-DAYDLSDDKIKELYGETLFKEAEYDIATNGDITVT 359 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 S D + + + + + + A T L Sbjct: 360 FAKPDLSSLPYDANTFQQVDFGTKNTDEYFTNAASQKAYKVPSSQGGKKDASDLTTDFLK 419 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + + + + S I ++ Sbjct: 420 DVFNITTDYTATDASGKALYSYTYGSGKLSIYKN 453 >gi|4378858|gb|AAD19726.1| flagellar hook protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 412 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/473 (7%), Positives = 97/473 (20%), Gaps = 64/473 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + N A + NI N+ + + + T + + + Sbjct: 2 AFYTSLTGLNAAQTDLSVPSNNIANSGSYGFKKTTTDFGELVADSPLAS----------- 50 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 N + S S + L Sbjct: 51 -----------------------------GQNIGQGTRLRATIQDFTSGSMKTTNRALDM 81 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 V + +V++ + + R + + + Sbjct: 82 MVNGDGFFLVKSPRPPSGTISLTRDGSFLTDKNNNVVTSDGHYLQVYATTNSGNIYNNGE 141 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + L S +S T + + Sbjct: 142 TGSATGGRVVKNLTLPSYEDQVSI-------------SSATGETVQVGNNLARTGDVTVT 188 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + + + +L I + N + A + Sbjct: 189 GTNGDTVIHNAKITLGGATINSDGSTTGGVLTITGGTIGAGVNSVANTATYTSTKAAAPI 248 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + G+ + + + ++S V Sbjct: 249 TTSAGVSTLTGVTDLGTLSYNGDTYTGSPITAFNPQTSTDESGDTSSALSNISVGTDGKV 308 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + + W S S + Sbjct: 309 TATFANGNQYILGAVALGDVNNRNGLHSTGNA-----------NWTVTGTSGSLNYREAD 357 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++L +EL LI ++++ ++K I ++M+ ++ Sbjct: 358 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 410 >gi|32490792|ref|NP_871046.1| flagellar basal body rod protein FlgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165998|dbj|BAC24189.1| flgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 260 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 2/167 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + D N + S + Q ++ + N+ Sbjct: 93 TDIAIQGPGFFQVLMSDGTNMYTRNGSFQLDQYGQLVTSNGYPVQPSITIPNGSSNLTIS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + + ++ + L + + E S S + Sbjct: 153 KDGIVSVMVPGQTQPQEVGQLTISTFINSSGLESAGESL--YKETQSSGSPADNTPGMNG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + VN+ EEL +I+ +++Y +++K+I +D+MLQ L Sbjct: 211 AGSLKQKFVENSNVNIAEELITMIQTQRAYELNSKVISTSDQMLQRL 257 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 36/158 (22%), Gaps = 5/158 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A+ I NI N + R+ + T R Sbjct: 1 MIRSLAIAKTGLEAQQINMDVISNNISNVSTNGFKRQKAIFEDLLY----QTIRQPGAKS 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEAL-KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 ++ + +G + + + + L S N+ Sbjct: 57 SEQTILPSGLQLGTGVNSSATIKIHLQGGLTNTGNETDIAIQGPGFFQVLMSDGTNMYTR 116 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + V N + ++ I + Sbjct: 117 NGSFQLDQYGQLVTSNGYPVQPSITIPNGSSNLTISKD 154 >gi|161503733|ref|YP_001570845.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865080|gb|ABX21703.1| hypothetical protein SARI_01818 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 260 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 N+ + + + + L N ++E S Sbjct: 142 IPANALNITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 46/205 (22%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALNITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 >gi|15616948|ref|NP_240161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681701|ref|YP_002468087.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682256|ref|YP_002468640.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471397|ref|ZP_05635396.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386809|sp|P57424|FLGG_BUCAI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298916|pir||G84969 flagellar basal-body rod protein flgG [imported] - Buchnera sp. (strain APS) gi|10039013|dbj|BAB13047.1| flagellar basal-body rod protein flgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621989|gb|ACL30145.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624544|gb|ACL30699.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086079|gb|ADP66161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086651|gb|ADP66732.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087237|gb|ADP67317.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087756|gb|ADP67835.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 260 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 2/166 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + S + N Q +N F N+ Sbjct: 94 DVAINGSGFFQVQLPDGNIAYTRDGSFQLDQNGQLVTNSGFPIIPEINIPSNSTNINIAR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + N L N + E S S Sbjct: 154 DGVISVVVQGQTQPVLLGQLNLINFVNNSGLESLGENL--YQETQASGSPIETTPGLNGT 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L Sbjct: 212 GVLYQGYVETSNVNVAEELVNMIQTQRAYEINSKSISTSDQMLQKL 257 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 11/186 (5%), Positives = 36/186 (19%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + I N+ N + R + Sbjct: 1 MIPSLWISKTGLDAQQINMNIISNNLANVSTNGFKRSRAVFEDLMYQTIREAGTNSSLET 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + L ++ F ++ N Sbjct: 61 TLPSGLQLGTGVRPVSTERIH---TQGNLSKTDASKDVAINGSGFFQVQ------LPDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + S + + + N ++ + Sbjct: 112 IAYTRDGSFQLDQNGQLVTNSGFPIIPEINIPSNSTNINIARDGVISVVVQGQTQPVLLG 171 Query: 159 EISNLR 164 +++ + Sbjct: 172 QLNLIN 177 >gi|15596279|ref|NP_249773.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|107100527|ref|ZP_01364445.1| hypothetical protein PaerPA_01001552 [Pseudomonas aeruginosa PACS2] gi|116049011|ref|YP_792187.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|152984786|ref|YP_001349648.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218892954|ref|YP_002441823.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|254234218|ref|ZP_04927541.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|254239440|ref|ZP_04932762.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|296390554|ref|ZP_06880029.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAb1] gi|313106037|ref|ZP_07792296.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] gi|9946998|gb|AAG04471.1|AE004539_13 flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|115584232|gb|ABJ10247.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|126166149|gb|EAZ51660.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|126192818|gb|EAZ56881.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|150959944|gb|ABR81969.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218773182|emb|CAW28994.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|310878798|gb|EFQ37392.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] Length = 261 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D + S + + Q ++ F + V Sbjct: 91 QPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNSDGQIVTSNGFALEPAIVVPNETQTFT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ + A L N +LE S + + Sbjct: 151 VGQDGTVSVTTTGNAQPQVIGNIQTADFINPAGLQAIGNNL--FLETGSSGAPQVGTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++++ VN+ EEL +I +++Y +++K+I D+ML Sbjct: 209 NGLGTVAQNTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 18/245 (7%), Positives = 47/245 (19%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L+ ++ + +I N+ N + R Sbjct: 1 MLSALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L + + F + Sbjct: 61 ELPSGLQLGTGVRVVGTQKI---FTPGSLQTTEQPLDMAVNGRGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + L ++ E +A ++ Sbjct: 112 VSYTRDGSFHLNSDGQIVTSNGFALEPAIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIG 171 Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 I + N+ +S + + + + V Sbjct: 172 NIQTADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQNTLENSNVNVVEELV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|269965650|ref|ZP_06179763.1| putative flagellar hook-associated protein [Vibrio alginolyticus 40B] gi|269829718|gb|EEZ83954.1| putative flagellar hook-associated protein [Vibrio alginolyticus 40B] Length = 107 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 21/92 (22%), Gaps = 10/92 (10%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57 N A + +N+ N + Y R+ + V V + R Sbjct: 5 NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89 K + +S E Sbjct: 65 VTDQFLIKQTWSTNSMAAYASGYTRNAESAEN 96 >gi|187935288|ref|YP_001885050.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] gi|187723441|gb|ACD24662.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] Length = 364 Score = 74.3 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%) Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L S + A D +P Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + LLE + NS G + S S+ F + V+L E+ + +I Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ S+K+I D++LQT+ ++ Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 48/228 (21%), Gaps = 13/228 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + + I NI N + T Sbjct: 1 MLRSMYSGISGMKSNQVKLDVIGNNIANVSTTGFKSSSARFTDMLY------------QN 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121 S+ G + ++ N+ + S + + Y + Sbjct: 49 VSSATAPTSTKGGTNAKQVGLGSQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGP 108 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + I D + L+ V+ + T Sbjct: 109 ASYGGDDGTKGGTSIVNGSINGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D+ ++ E + + V G TL Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216 >gi|85710164|ref|ZP_01041229.1| flagellar hook protein [Erythrobacter sp. NAP1] gi|85688874|gb|EAQ28878.1| flagellar hook protein [Erythrobacter sp. NAP1] Length = 279 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 2/169 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 D I+ + + + ++ + G ++ F Sbjct: 113 SGTLQDAFGDRIQGFPVDGAGTPTSNVPADITIPTSRTVTDPGTGATQDFQLTSVGFDAR 172 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 L Y D F++ +A N L + W S + F Sbjct: 173 GVLTATYSDGFSEPVAMLSLATFPANGGLRSIGQ--TKWEATAESGDPEFGQPGVGNFGA 230 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I+ V+L EE+ L+ ++++ + + I + QT+L + Sbjct: 231 IATGTLERSNVDLAEEMVSLLTAQRNFQANARAIDTATAITQTVLNLQR 279 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 10/164 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55 F + + NA I NI NA+ + + + + T Sbjct: 2 SFFTSLSGMRNAETDLRVISNNIANAETAGFKKSSAQFSDLVASGGSTDPRTTPGIGATV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +++ L A+ F +S D ++ + I +++ Sbjct: 62 SRISQDFGLGQLEQTGRALDIAINGGGFITSANAISGDINFTRNGNLEIVASGTLQDAFG 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + ++R V A ++ +L Sbjct: 122 DRIQGFPVDGAGTPTSNVPADITIPTSRTVTDPGTGATQDFQLT 165 >gi|288574697|ref|ZP_06393054.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570438|gb|EFC91995.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 75/261 (28%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 G T +++ N V + Q + P ++ + Sbjct: 4 SLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGTTVP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + +++ +R+ E N + + + D Sbjct: 64 TGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEWQRD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + Q ++ +L + V + ++ + ++ D + + Sbjct: 124 GDGQIVTSDGYLLEPAIVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIELVRFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L RN + E S + F + + V + EE+ LI +++Y Sbjct: 184 LRAIGRNL--FRETAASGDPQIGNPGDDGFPTLQQGILERSNVQVVEEMVNLIVAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D++L+ + Sbjct: 242 ANSKTIQTADRLLEVANGLKR 262 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 13/216 (6%), Positives = 41/216 (18%), Gaps = 15/216 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPE 48 ++ N+ N + Y + T Sbjct: 1 MIRSLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 V Q + + + N + Sbjct: 61 TVPTGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEW 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + +L ++ + +++ + D + + +I +R Sbjct: 121 QRDGDGQIVTSDGYLLEPAIVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIELVRFVN 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 F+ + + D + + Sbjct: 181 PAGLRAIGRNLFRETAASGDPQIGNPGDDGFPTLQQ 216 >gi|307293787|ref|ZP_07573631.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] gi|306879938|gb|EFN11155.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] Length = 280 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 65/262 (24%), Gaps = 11/262 (4%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 T V + S V + +G + Q Sbjct: 19 TTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRTQGISQQFTQGTIETTDK 78 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK---------LCQGISE 336 + S D I + + D + Sbjct: 79 TLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTGARLQVVPLDPTTGVPTA 138 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 T + P ++ + ++ + Y D +A N+ Sbjct: 139 TGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYADGSTVYLGATAIAAFNS 198 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + W N S + L + +F + V++ EEL LI ++ Sbjct: 199 QEGLRQSGDAH--WTATNASGAPMLGTGNSGLFGSVRSGALERSNVDITEELVNLISAQR 256 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 ++ ++K I + + T++ Sbjct: 257 NFQANSKAIEAANTLSTTIVNM 278 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 13/146 (8%), Positives = 36/146 (24%), Gaps = 15/146 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57 F + + A ++ N+ N ++ + + + + V R+ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ + + + F +K + + Y Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVK-----RSADDQIGYTRNGAFSVEEDRYV 116 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS 141 + + L +D V T Sbjct: 117 VDTTGARLQVVPLDPTTGVPTATGTL 142 >gi|251780952|ref|ZP_04823872.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085267|gb|EES51157.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 364 Score = 74.3 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%) Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L S + A D +P Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + LLE + NS G + S S+ F + V+L E+ + +I Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ S+K+I D++LQT+ ++ Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 49/228 (21%), Gaps = 13/228 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + T T Sbjct: 1 MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATA------ 54 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121 S+ G A ++ N+ + S + + Y + Sbjct: 55 ------PTSTKGGTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCVDGDGYLIVGTGP 108 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + I D + L+ V+ + T Sbjct: 109 ASYGGDDGTKGGTSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D+ ++ E + + V G TL Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216 >gi|330721006|gb|EGG99167.1| Flagellar basal-body rod protein FlgG [gamma proteobacterium IMCC2047] Length = 261 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 2/176 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 E + + + D + + + + ++ F Sbjct: 82 TNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQFQLNSDGVIVNSQGFELQPSIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 N+ + S +A L N + E S Sbjct: 142 VPANTLNITIGSDGVISATVAGSSTPTQIGDIQLAEFINPTGLQAIGGNL--YKETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + I + VN+ EEL +I +++Y ++ K+I +D+MLQ Sbjct: 200 TPTTGTPGLSGRGTIEQGVLENSNVNIVEELVDMITTQRAYEMNTKVISTSDQMLQ 255 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 15/147 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 +LA ++ + Q ASI N+ N Y R + V +++ Sbjct: 1 MLASLWISKTGLSAQDQALASISNNLANVSTTGYKRERAVFQDLLYPVHTQPGAQSSQST 60 Query: 62 --------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + LH + S + L + + + Sbjct: 61 QLPSGLQTGTGVKTVATQKLHTNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + N L ++ A + Sbjct: 121 QLNSDGVIVNSQGFELQPSITVPANTL 147 >gi|89092138|ref|ZP_01165093.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92] gi|89083873|gb|EAR63090.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92] Length = 261 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 54/176 (30%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 E A + F+ + + D + + + + + + + Sbjct: 81 FGTGEIEITEEAFDVAINGRGFLQVTLPNGDTAYTRNGQLHLNADNELVTPEGYQINPAI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N + ++ +A L +N + E S Sbjct: 141 TLPGEVVNFSISTDGVVEVVTAGNNTPTQIGQLQMADFVNPQGLQSLGQNL--YQETGAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + + VN +EL +I +++Y +++K+I D+ML Sbjct: 199 GAPIISNPGENGTGILVQGALEGSNVNSVQELVDMITTQRAYEMNSKVISTADEML 254 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/205 (8%), Positives = 48/205 (23%), Gaps = 28/205 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44 + N A+ I N+ N + + + Sbjct: 1 MHGALNVAKTGMTAQDTNLKVISNNLANVSTVGFKKDAVVFEDLMYQIRRQPGAQTAEEA 60 Query: 45 ISPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V R+ + A + F + ++ Sbjct: 61 QLPSGLQVGLGVRTVGTQKLFGTGEIEITEEAFDVAINGRGFLQV------TLPNGDTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 +L + ++ I EVV ++ V+ + A + ++ Sbjct: 115 TRNGQLHLNADNELVTPEG-YQINPAITLPGEVVNFSISTDGVVEVVTAGNNTPTQIGQL 173 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + F++ + + + Sbjct: 174 QMADFVNPQGLQSLGQNLYQETGAS 198 >gi|294635612|ref|ZP_06714089.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] gi|291091064|gb|EFE23625.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] Length = 260 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQVSPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + ++ + L N + E + S Sbjct: 142 IPANATSMTIGRDGIVSVTVQGQAAAQQVGQLTLSTFINDAGLESVGENL--YQETDSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 APTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 28/155 (18%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R+ + Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F + + Sbjct: 61 TLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQVSPAITIPANA 146 >gi|218678737|ref|ZP_03526634.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894] Length = 112 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 ++ + Y + K+ P+A + + L + N +S Sbjct: 1 SIGTDGVVSVSYANGATKSLYQIPLATVASPDNLTLMSGNVYS--ANGQSGVTVTGFPQT 58 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + V+L EL+ +I+ ++SY ++K+ ++ L+ + Sbjct: 59 NGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLKR 112 >gi|33601543|ref|NP_889103.1| flagellar basal body rod protein FlgG [Bordetella bronchiseptica RB50] gi|33575979|emb|CAE33058.1| flagellar basal-body rod protein [Bordetella bronchiseptica RB50] Length = 261 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354 + S + G + ++ D ++ V+ + ++ Sbjct: 80 VFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPP 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +V L G + N VA L N +LE + Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQVATFINPTGLQSVGENL--YLETD 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S +L I + Y T VN+ EEL +I +++Y +++K + +D+ML Sbjct: 198 SSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257 Query: 475 LLEG 478 L + Sbjct: 258 LTQL 261 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 58/246 (23%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R + Sbjct: 1 MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAVFQDLMYQTLRQPGAQVGDAN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + ++ + + F ++ Sbjct: 61 QLPSGLQLGTGVQVAATQRV---FSQGNMNNTGGEMDIAIQGRGFLQVE------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ ++ V DNA + + + Q A + +I Sbjct: 112 QAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + L V + + +T S A+ D Q + + + S + Sbjct: 172 GQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|293395585|ref|ZP_06639868.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] gi|291421904|gb|EFE95150.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] Length = 260 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + D + S I N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRDGSFQIDQNGQLVTASGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + + L N + E S Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETESSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + +D+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + S + + A + Sbjct: 118 GSFQIDQNGQLVTASGFQVQPAITIPANAL 147 >gi|322380502|ref|ZP_08054691.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] gi|321147069|gb|EFX41780.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] Length = 262 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + + I + +L Sbjct: 76 SVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKIDDQGNMVTTEGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + S + +A L N + Sbjct: 136 LIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAGLHALGDNLLAV- 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + + + + + V L EE++ LI +++Y ++K I D M Sbjct: 195 -TSASGPAIVGNANSDGYGQLRQGFLELSNVRLVEEMTDLITAQRAYEANSKTIQTADNM 253 Query: 472 LQTLLEGVK 480 LQT+ + Sbjct: 254 LQTVNSLKR 262 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 11/177 (6%), Positives = 33/177 (18%), Gaps = 15/177 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 +L A + NI N + + R+ + Sbjct: 1 MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKRQRADFNDLFYQALQYAGTSTSDTT 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD---------HYNNSPTHYISKL 107 + + +S E + A ++ Sbjct: 61 RSPNGIEVGLGVRTASVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + +L + + + + + +I+ Sbjct: 121 KIDDQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLAN 177 >gi|330502736|ref|YP_004379605.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328917022|gb|AEB57853.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + F D + S + + Q ++ F Sbjct: 77 TQKIFTAGSLQTTEQPLDLAVNGRGFFQILQPDGTVSYTRDGSFHLNSDGQIVTSQGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V + + ++ + +A L N +LE Sbjct: 137 EPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIGNIQLADFVNPAGLEAIGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + ++ V++ EEL +I +++Y +++K+I D+ML Sbjct: 195 TGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/245 (7%), Positives = 51/245 (20%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L ++ + +I N+ N + R Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQTSQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L + + F + + Sbjct: 61 ELPSGLQLGTGVRVVGTQKI---FTAGSLQTTEQPLDLAVNGRGFFQILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE--EVVQNFNTSAREVQKIRADADKEI 156 + + L ++ AE + + A A Sbjct: 112 VSYTRDGSFHLNSDGQIVTSQGFALEPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++++ + N+ +S + + + + V Sbjct: 172 NIQLADFVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|188588515|ref|YP_001920211.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] gi|188498796|gb|ACD51932.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] Length = 364 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%) Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + L S + A D +P Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + LLE + NS G + S S+ F + V+L E+ + +I Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ S+K+I D++LQT+ ++ Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 49/228 (21%), Gaps = 13/228 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + T T Sbjct: 1 MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATA------ 54 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121 S+ G A ++ N+ + S + + Y + Sbjct: 55 ------PTSTKGGTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGP 108 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + I D + L+ V+ + T Sbjct: 109 TSYGGDDGTKGGTSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + D+ ++ E + + V G TL Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216 >gi|238788317|ref|ZP_04632111.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] gi|238723563|gb|EEQ15209.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] Length = 260 Score = 73.9 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D N + S + N Q ++ F ++ Sbjct: 94 DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQIQPAITIPANALSMTVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + N L N + E S + + Sbjct: 154 DGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNDSTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 16/208 (7%), Positives = 44/208 (21%), Gaps = 24/208 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTSGGFQIQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHD 189 + E N + ++ + Sbjct: 178 FINNSGLESVGENLYQETASSGAPNDST 205 >gi|293605005|ref|ZP_06687401.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] gi|292816610|gb|EFF75695.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 2/132 (1%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + ++ +V L G + N +A L N Sbjct: 132 SGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSIGEN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +LE + S +L I ++Y T VN+ EEL +I +++Y +++K + Sbjct: 192 L--YLETDASGPANLLQPGVDGAGSIMQNYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249 Query: 467 FTDKMLQTLLEG 478 +D+ML L + Sbjct: 250 TSDEMLARLTQL 261 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 56/246 (22%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R + Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + L+ + + F ++ Sbjct: 61 QLPSGLQLGTGARVAATERIH---TAGNLNNTGGEMDIAINGRGFLQVE------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ +S ++ V DNA + + Q A + +I Sbjct: 112 QGYTRDGALQRDQNGQLTTVSGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + L + + + +T + A+ D + + S + Sbjct: 172 GQLQIATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAGSIMQNYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|163856437|ref|YP_001630735.1| flagellar basal body rod protein FlgG [Bordetella petrii DSM 12804] gi|163260165|emb|CAP42467.1| flagellar basal-body rod protein FlgG [Bordetella petrii] Length = 261 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 5/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354 + + + + + D T+ V+ + ++ Sbjct: 80 VFTQGNLNNTGSELDIAIDGKGFLQVDLPDGTQAYTRDGTLQVDQNGQLTTAGGYVIQPP 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +V L G + N +A L N +LE + Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGLNVQIGQLQLATFINPPGLQSVGENL--YLETD 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S ++ I + Y T VN+ EEL +I +++Y +++K + +D+ML Sbjct: 198 SSGPANILQPGIDGAGSILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257 Query: 475 LLEG 478 L + Sbjct: 258 LTQL 261 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 57/246 (23%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R + Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAIFQDLMYQTLRQPGAQVGDAN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L+ S + + F + D Sbjct: 61 QLPTGLQLGTGVRVASTERV---FTQGNLNNTGSELDIAIDGKGFLQV------DLPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ ++ V DNA + + + Q A + +I Sbjct: 112 QAYTRDGTLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGLNVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L V + + +T S A+ D + + + S + Sbjct: 172 GQLQLATFINPPGLQSVGENLYLETDSSGPANILQPGIDGAGSILQQYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|238927617|ref|ZP_04659377.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884542|gb|EEQ48180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 264 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 4/214 (1%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + A Q ++ +L RV + + F + D Sbjct: 53 GARNGADSQYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTT 112 Query: 329 KLCQG-ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNF 386 + + S+ L DG ++ + + ++G + + + Sbjct: 113 AYTRDGTWKLDSDRRMVTSDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEA 172 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A L +N ++ + S + +++ V + E Sbjct: 173 GQITLARFVNPAGLTAVGKNL--FVVSDASGEAIESNPGEDGAGTLTQGTLEMSNVQIVE 230 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ +I +++Y ++K I +D ML+ + + Sbjct: 231 EMVNMIVSQRAYESNSKAITTSDSMLEIANQLKR 264 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 13/175 (7%), Positives = 34/175 (19%), Gaps = 14/175 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58 ++ A + Q + NI N + + Sbjct: 1 MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60 Query: 59 ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + A+ E + + + Sbjct: 61 QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 S+ L I + + T + + + +A + + E + Sbjct: 121 KLDSDRRMVTSDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQI 175 >gi|241766922|ref|ZP_04764728.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] gi|241362626|gb|EER58474.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] Length = 259 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 3/175 (1%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC-VNPQYRSNPSFLRDGGSVSKKFLW 363 + + + D + N S ++K Sbjct: 87 QQSGKDFDLAINGAGFFQVSMPDGTTAYTRDGSFTIDKDGQMVNSSGYPLTDGITKVAGA 146 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 ++A ++ +A L +N + E S + Sbjct: 147 VKASIAANGEVTFTDSAGKAVGTGRLTLASFINPAGLEPVGQNL--YKESIASGNPQTGS 204 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + + + T VN+ EEL +I+ +++Y +++K I +D+ML L + Sbjct: 205 PTSAGFGELKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQMLAKLAQL 259 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 29/156 (18%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N Y R + + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGANSSEQS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L F + Sbjct: 61 QLPTGLHLGLGVNVVATNR---DFRQGALQQSGKDFDLAINGAGFFQV------SMPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + N S L + A V Sbjct: 112 TAYTRDGSFTIDKDGQMVNSSGYPLTDGITKVAGAV 147 >gi|94500243|ref|ZP_01306776.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] gi|94427542|gb|EAT12519.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] Length = 261 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 2/178 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 E+ + F + D + + + ++ +L + Sbjct: 82 TTGSLEETSQPLDLAINGRGFFQIALPDGQIAYTRDGTFHMDAEGNIVNSQGYLLEPNIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + D+ + V L N +LE S Sbjct: 142 IPDQTNTMTISRDGIVSVTQFGDTTPQEIGQIDVVDFINPTGLQAVGGNL--FLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + ++ + S+ F I + + V + EE+ +I V+++Y +++K++ D+MLQ L Sbjct: 200 APEIGVASEDGFGSIEQGFLENSNVKVVEEMVKMITVQRAYEMNSKVVSSADQMLQYL 257 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/245 (7%), Positives = 48/245 (19%), Gaps = 37/245 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ N +I N+ N + + + Sbjct: 1 MHSALWVSKTGLNAQDHGLTTISNNLANVSTTGFKKDRAVFEDLIYQIQRQPGALSSQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + L S + + F + Sbjct: 61 RLPSGLQLGTGVKVAGTQKIH---TTGSLEETSQPLDLAINGRGFFQIA------LPDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 E N +L + + + D + Sbjct: 112 IAYTRDGTFHMDAEGNIVNSQGYLLEPNITIPDQTNTMTISRDGIVSVTQFGDTTPQEIG 171 Query: 159 E---ISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + + + N + + + D + Q E + + Sbjct: 172 QIDVVDFINPTGLQAVGGNLFLETAASGAPEIGVASEDGFGSIEQGFLENSNVKVVEEMV 231 Query: 215 NDMVV 219 + V Sbjct: 232 KMITV 236 >gi|261840277|gb|ACY00043.1| flagellar basal body rod protein FlgG [Helicobacter pylori 52] Length = 262 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + T Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQG 210 >gi|308050370|ref|YP_003913936.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632560|gb|ADN76862.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 262 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + N+ +A L +N +LE S + + + + T Sbjct: 165 AAENQVIGQIEIANFVNPTGLEPIGQNM--FLETGASGAPIQGVPGLDGLGTLRQGALET 222 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 VN+ EEL +I+ ++ Y +++K+I D+ML Sbjct: 223 SNVNVTEELVNMIESQRIYEMNSKVISTVDQML 255 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 32/156 (20%), Gaps = 15/156 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENKNM- 62 ++ + A+I N+ NA Y + + S+N + Sbjct: 4 ALWISKTGLDAQQTDIATISNNLANASTVGYKKSRAIFEDLLYQTINQAGGISSQNTELP 63 Query: 63 ------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + + + + L + Sbjct: 64 AGLTLGAGTKVAATQRIFSQGNMLTTDNSLDLMIEGPGFFEIQLPDGTIAYSRNGQFALD 123 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 E L I E+ + EV Sbjct: 124 DEGQLVTPGAGFLLNPGIQVPEDAQSITVSGEGEVS 159 >gi|242309754|ref|ZP_04808909.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] gi|239523755|gb|EEQ63621.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] Length = 263 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + S + ++ +L Sbjct: 76 SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V + ++ L N +L Sbjct: 136 LVPNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N S + F + + + T V L EE++ LI +++Y ++K I D M Sbjct: 194 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253 Query: 472 LQTLLEGVK 480 LQ + + + Sbjct: 254 LQIVNQLKR 262 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 22/255 (8%), Positives = 50/255 (19%), Gaps = 34/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y + Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + F ++ Sbjct: 61 LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + E N +L + + N T + + +I Sbjct: 115 TRDGSFKLDDEGNVVNSQGYLLVPNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIE 174 Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + +N + Q + S + + + Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234 Query: 215 NDMVVYTSDGTTLFE 229 Y ++ ++ Sbjct: 235 VGQRAYEANSKSIQT 249 >gi|313141242|ref|ZP_07803435.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] gi|313130273|gb|EFR47890.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] Length = 262 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + S + ++ +L Sbjct: 75 SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 134 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ L N +L Sbjct: 135 LVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 192 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N S + F + + + T V L EE++ LI +++Y ++K I D M Sbjct: 193 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 252 Query: 472 LQTLLEGVK 480 LQ + + + Sbjct: 253 LQIVNQLKR 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/252 (8%), Positives = 48/252 (19%), Gaps = 34/252 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 A Q NI N + Y + SP Sbjct: 3 ALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSP 62 Query: 48 ENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V K + + F ++ Sbjct: 63 TGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAYTRD 116 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + E N +L + + N T + + +I + Sbjct: 117 GSFKLDDEGNVVNSQGYLLVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVN 176 Query: 165 RF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 L + +N + Q + S + + + Sbjct: 177 FINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQ 236 Query: 218 VVYTSDGTTLFE 229 Y ++ ++ Sbjct: 237 RAYEANSKSIQT 248 >gi|119953549|ref|YP_945759.1| flagellar basal body rod protein FlgG [Borrelia turicatae 91E135] gi|119862320|gb|AAX18088.1| flagellar basal-body rod protein FlgG [Borrelia turicatae 91E135] Length = 264 Score = 73.9 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 2/89 (2%) Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 A L N + E S + + V++ EE+ + Sbjct: 178 ARFVNPAGLNAIGNNI--FKETIGSGEEISGTPGSSGMGRLRQGILEMSNVSIAEEMVTM 235 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +++Y I++K I +D ML + Sbjct: 236 IVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 12/194 (6%), Positives = 35/194 (18%), Gaps = 27/194 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQKRAGTPATEDT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + ++ L A + F + Sbjct: 61 VSPLGNQVGHGTKVSATHRIFEQGNLQATNLKTDVAIEGDGFYKIL------LPDGTYGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + L + E + + S + ++ D + Sbjct: 115 TRDGSFKIDANGDLVTSQGYKLLPEISFPEEYIKDSIIISQEGIISVKVDGSPDPIELGQ 174 Query: 162 NLRRFLSELTVVND 175 +N Sbjct: 175 MEIARFVNPAGLNA 188 >gi|213613181|ref|ZP_03371007.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 110 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + ++ +Y + + +A N L N W S L Sbjct: 1 MNNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSG 58 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F ++ V+L +EL +I +++Y + + I D++L TL+ Sbjct: 59 NFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 109 >gi|269138584|ref|YP_003295284.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|267984244|gb|ACY84073.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|304558594|gb|ADM41258.1| Flagellar basal-body rod protein FlgG [Edwardsiella tarda FL6-60] Length = 260 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQVTPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + ++ + L N + E S Sbjct: 142 IPANATSMTIGRDGIVSVTLQGQAAAQQVGQLTLSTFINDAGLESVGENL--YQETESSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 APTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 28/155 (18%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R+ + Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F + + Sbjct: 61 TLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQVTPAITIPANA 146 >gi|163784308|ref|ZP_02179218.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] gi|159880426|gb|EDP74020.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] Length = 200 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 15/186 (8%), Positives = 39/186 (20%), Gaps = 28/186 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + I NI N + + + Sbjct: 1 MIRALWTSATGMEAQQTNLDVISNNIANVNTVGFKKSRANFEDLIYQNLRDPGVMSSTET 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V + L + + F ++ Sbjct: 61 RVPTGMQVGLGVKLSDISKTFSQGSLMKTDRPLDIAIQGKGFFKVE------LPGGGEAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160 + + Y L + A E ++ + V +R + + E+ Sbjct: 115 TRAGNFQIDDQGYIVTPEGYRLSPNIQITAPETLISINISENGNVYAVRNEGGVQTTEEL 174 Query: 161 SNLRRF 166 + + Sbjct: 175 GQINLY 180 >gi|304438315|ref|ZP_07398256.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368681|gb|EFM22365.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 264 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 66/214 (30%), Gaps = 4/214 (1%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + A Q ++ +L RV + + F + D Sbjct: 53 GARNGADSQYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTT 112 Query: 329 KLCQG-ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNF 386 + + ++ L DG ++ + + ++G + + + Sbjct: 113 AYTRDGTWKLDSDRRMVTTDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEA 172 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A L +N ++ + S + +++ V + E Sbjct: 173 GQITLARFVNPAGLTSVGKNL--FVVSDASGEAIESNPGEDGAGTLTQGTLEMSNVQIVE 230 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ +I +++Y ++K I +D ML+ + + Sbjct: 231 EMVNMIVSQRAYESNSKAITTSDSMLEIANQLKR 264 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 12/175 (6%), Positives = 34/175 (19%), Gaps = 14/175 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58 ++ A + Q + NI N + + Sbjct: 1 MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60 Query: 59 ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + A+ E + + + Sbjct: 61 QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 ++ L I + + T + + + +A + + E + Sbjct: 121 KLDSDRRMVTTDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQI 175 >gi|300854216|ref|YP_003779200.1| putative flagellar hook protein FlgE [Clostridium ljungdahlii DSM 13528] gi|300434331|gb|ADK14098.1| predicted flagellar hook protein FlgE [Clostridium ljungdahlii DSM 13528] Length = 323 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 23/307 (7%), Positives = 75/307 (24%), Gaps = 5/307 (1%) Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + + F + + +S+ + + + + + + Sbjct: 20 NVTSDNIANSSTTGFKSKNMIFEDMLSQNLSDPSAPVDGGLGGINARQSGLGVKVAGINT 79 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ--NQLDEM 293 +F +S T + + G S + Sbjct: 80 DFTAGSSQTTNRSLDFMANKGGSYFVVSPDGDVSNANGGNASDTTSKSYYYTRDGAFTLD 139 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + + N ++ G + + I Sbjct: 140 EAGNLLTQDGYHVMGYNVDDKTGAITDTASGTDTSNIVPPKCLQIAQYYTKDGAVDTAPQ 199 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + ++ +I + +A L++ N + Sbjct: 200 DQTTADNEKVTSWSVGPSTGIITVKTALGSHQVGRIALASFQNEGGLVKDGGNL--YESS 257 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + +++ V+L ++ + +I +++ + K+I D +L+ Sbjct: 258 PNSGDAAYGTPGTN-YGSLNQGALEMSNVDLAQQFTDMIVATRAFQANGKIITTDDTILE 316 Query: 474 TLLEGVK 480 L+ + Sbjct: 317 DLVNLKR 323 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/313 (6%), Positives = 54/313 (17%), Gaps = 7/313 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + Q+ NI N+ + ++ + + + Sbjct: 1 MLPSLYTAISGLRVNQQKLNVTSDNIANSSTTGFKSKNMIFEDMLSQNLSDPSAPVDGGL 60 Query: 63 FDKVLHA-------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 A+ + + ++ + Sbjct: 61 GGINARQSGLGVKVAGINTDFTAGSSQTTNRSLDFMANKGGSYFVVSPDGDVSNANGGNA 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + T + + + D + + V Sbjct: 121 SDTTSKSYYYTRDGAFTLDEAGNLLTQDGYHVMGYNVDDKTGAITDTASGTDTSNIVPPK 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 ++ D +D ++ S V + Sbjct: 181 CLQIAQYYTKDGAVDTAPQDQTTADNEKVTSWSVGPSTGIITVKTALGSHQVGRIALASF 240 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 E + G G+ AL + F + + Sbjct: 241 QNEGGLVKDGGNLYESSPNSGDAAYGTPGTNYGSLNQGALEMSNVDLAQQFTDMIVATRA 300 Query: 296 VLIGSFSEKDPIA 308 Sbjct: 301 FQANGKIITTDDT 313 >gi|307748584|gb|ADN91854.1| Hypothetical protein CJM1_1678 [Campylobacter jejuni subsp. jejuni M1] Length = 88 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 +A + N L E N + S + + + S V+L L+ Sbjct: 1 MASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTE 58 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y ++K I +D+MLQTL++ + Sbjct: 59 LIIIQRGYQANSKTISTSDQMLQTLIQLKQ 88 >gi|296103609|ref|YP_003613755.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058068|gb|ADF62806.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 75/249 (30%), Gaps = 4/249 (1%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + +++ +N V + + ++ Q Sbjct: 11 GLEAQQLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQNTLPSGLQLGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++ + + + + ++ D +P + Sbjct: 71 GVRPVSTQRVHTQGGMNQTGDEYDVAIEGEGFFQVQMPDGSTAYTRDGHFSKSPDGQLVN 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYC--DSFNKNFIFDPVAGINTNVTLLEYARN 406 + K G +++ + + + N L N Sbjct: 131 AEGYPIQPGIVIPQDATKLNIGSDGIVSVKVPGQAEEQQIGQLTLTTFVNNAGLESIGGN 190 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + E S + + + +SY VN+ EEL +I+V+++Y I++K + Sbjct: 191 L--YKETQSSGAPNELNPGMESAGTLKQSYVEISNVNVAEELVTMIQVQRAYEINSKAVS 248 Query: 467 FTDKMLQTL 475 +D+MLQ L Sbjct: 249 ASDQMLQRL 257 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 10/155 (6%), Positives = 33/155 (21%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + + ++ + F ++ + Sbjct: 61 TLPSGLQLGTGVRPVSTQRVH---TQGGMNQTGDEYDVAIEGEGFFQVQ------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + N + ++ + Sbjct: 112 TAYTRDGHFSKSPDGQLVNAEGYPIQPGIVIPQDA 146 >gi|187478187|ref|YP_786211.1| flagellar basal body rod protein FlgG [Bordetella avium 197N] gi|115422773|emb|CAJ49301.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 261 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 ++ +V L N G + N VA L N + Sbjct: 136 IQPPINVPDNALSMAINKEGVVSVTLPGNAGVNVQIGQLQVATFINPAGLQSVGENL--Y 193 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 LE + S +L I ++Y T VN+ EEL +I +++Y +++K + +D+ Sbjct: 194 LETDASGPANLLQPGADGAGSIMQNYVETSNVNVAEELVNMITAQRAYEMNSKAVKTSDE 253 Query: 471 MLQTLLEG 478 ML L + Sbjct: 254 MLARLTQL 261 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 10/147 (6%), Positives = 28/147 (19%), Gaps = 15/147 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A+ + I N+ N + R + V Sbjct: 1 MMRSLWIAKTGLESQQTSMDVISHNLANVQTNGFKRERAVFQDLMYQTLRQPGAQVGDAN 60 Query: 57 SENKNM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + LH+ + + + D L Sbjct: 61 QLPTGLQLGTGARVAATQRLHSAGNLNNTGAEMDVAIQGRGFFQVDLPDGTQAYTRDGGL 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEV 134 + ++ + + Sbjct: 121 GMDQNGQLTTMGGYVIQPPINVPDNAL 147 >gi|49082998|gb|AAT50899.1| PA1082 [synthetic construct] Length = 262 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D + S + + Q ++ F + V Sbjct: 91 QPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNSDGQIVTSNGFALEPVIVVPNETQTFT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ + A L N +LE S + + Sbjct: 151 VGQDGTVSVTTTGNAQPQVIGNIQTADFINPAGLQAIGNNL--FLETGSSGAPQVGTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++++ VN+ EEL +I +++Y +++K+I D+ML Sbjct: 209 NGLGTVAQNTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/245 (7%), Positives = 47/245 (19%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L+ ++ + +I N+ N + R Sbjct: 1 MLSALWVSKTGLSAQGMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L + + F + Sbjct: 61 ELPSGLQLGTGVRVVGTQKI---FTPGSLQTTEQPLDMAVNGRGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + L ++ E +A ++ Sbjct: 112 VSYTRDGSFHLNSDGQIVTSNGFALEPVIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIG 171 Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 I + N+ +S + + + + V Sbjct: 172 NIQTADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQNTLENSNVNVVEELV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|70729006|ref|YP_258740.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf-5] gi|68343305|gb|AAY90911.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens Pf-5] Length = 261 Score = 73.5 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + + Q + F Sbjct: 77 TQKNFTAGSLQTTEQPLDLAINGRGFFQILQPDGTTAYTRDGTFHLNSDGQIVTASGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + ++ A L N +LE Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQTADFINPAGLQAQGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F ++ V+ EE+ +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQIGTPGLNGFGTTLQNTLEASNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 49/242 (20%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N L + + F + + + Sbjct: 61 ELPTGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDLAINGRGFFQILQ------PDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--ELE 159 + + S L V+ + I + ++ L+ Sbjct: 115 TRDGTFHLNSDGQIVTASGFALEPAVVVPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ N+ AS + + + ++ Sbjct: 175 TADFINPAGLQAQGNNLFLETAASGAPQIGTPGLNGFGTTLQNTLEASNVSTVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 TT 236 >gi|298529926|ref|ZP_07017328.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] gi|298509300|gb|EFI33204.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] Length = 260 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 +++ D P+ L RN E S + + F Sbjct: 154 GNIVCVDGDDNVIAEGEIPIYRFMNPAGLNSAGRNLYS--ETEASGPATEGVPGEENFGS 211 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + V + +E+ +I +++Y I++K I +D+MLQ + + Sbjct: 212 IRSGALESSNVEIVDEMVNMIIGQRAYEINSKAIQTSDQMLQMANQMKR 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 9/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N+ N + + + Sbjct: 1 MMRSLWTAATGMAAQQMNIDVTSNNLANVNTDGFKKSQAQFEDLMYQTLKVAGTENLTGD 60 Query: 46 -SPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V S +K + + F + + Sbjct: 61 RVPTGLQVGMGTNPLSVHKIFTQGDYKQTGNPLDLTIEGDGFFQVM-------ANDEVRY 113 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + + + L Sbjct: 114 TRAGSFKPDQDGRIVTANGYPLQ 136 >gi|15646192|ref|NP_208376.1| flagellar basal body rod protein FlgG [Helicobacter pylori 26695] gi|188528376|ref|YP_001911063.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|217033804|ref|ZP_03439229.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|308183740|ref|YP_003927867.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|2314768|gb|AAD08623.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] gi|188144616|gb|ACD49033.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|216943702|gb|EEC23145.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|261838871|gb|ACX98637.1| flagellar basal-body rod protein [Helicobacter pylori 51] gi|297380761|gb|ADI35648.1| flagellar basal-body rod protein FlgG [Helicobacter pylori v225d] gi|308062867|gb|ADO04755.1| flagellar basal body rod protein FlgG [Helicobacter pylori Cuz20] gi|308064367|gb|ADO06254.1| flagellar basal body rod protein FlgG [Helicobacter pylori Sat464] gi|308065925|gb|ADO07817.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|315585990|gb|ADU40371.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 35A] gi|317178306|dbj|BAJ56095.1| flagellar basal body rod protein FlgG [Helicobacter pylori F16] gi|317179787|dbj|BAJ57575.1| flagellar basal body rod protein FlgG [Helicobacter pylori F30] gi|317181286|dbj|BAJ59072.1| flagellar basal body rod protein FlgG [Helicobacter pylori F32] gi|317182809|dbj|BAJ60593.1| flagellar basal body rod protein FlgG [Helicobacter pylori F57] gi|332674396|gb|AEE71213.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 83] Length = 262 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQG 210 >gi|224417699|ref|ZP_03655705.1| flagellar basal body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827048|ref|ZP_04869933.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253510454|gb|EES89113.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] Length = 263 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + S + ++ +L Sbjct: 76 SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ L N +L Sbjct: 136 LVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N S + F + + + T V L EE++ LI +++Y ++K I D M Sbjct: 194 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253 Query: 472 LQTLLEGVK 480 LQ + + + Sbjct: 254 LQIVNQLKR 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/255 (8%), Positives = 50/255 (19%), Gaps = 34/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y + Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + F ++ Sbjct: 61 LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + E N +L + + N T + + +I Sbjct: 115 TRDGSFKLDDEGNVVNSQGYLLVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIE 174 Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + +N + Q + S + + + Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234 Query: 215 NDMVVYTSDGTTLFE 229 Y ++ ++ Sbjct: 235 VGQRAYEANSKSIQT 249 >gi|167945879|ref|ZP_02532953.1| hypothetical protein Epers_04777 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 154 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%) Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + I G S NP + L S + + Sbjct: 3 NGPAPPNNYILYDPATESAGKSFPSSANPSQFDSFGGLSFRISGTPTVGDQLIVRNNTNA 62 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 ++ + +N + + E + + + + + + Sbjct: 63 ATGDNRNALALAAMQSQDRMLNLSASYSEVYSQLVAGVGASTRQAEASLAAQEGLLERNR 122 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 S GVNL EE + L++ +Q+Y S ++I Sbjct: 123 ASQEEVSGVNLDEEAAKLVQFQQAYQASAEMI 154 >gi|74317650|ref|YP_315390.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] gi|74057145|gb|AAZ97585.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ ++ A + F + D + S N Q + + Sbjct: 76 ATERIFTQGNLQQTGNAKDVAIQGNGFFQVLMPDGTTSYTRDGSFMADANGQLVTASGYA 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + +A L N Sbjct: 136 VQPAITIPADTQTLTIGRDGTVSVTQPGSATPVTIGTLQLAMFVNPAGLQSLGENLYA-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + +++ Y T VN+ EEL +I+ +++Y I++K I +D+M Sbjct: 194 ETAASGTPSSSAPGSNGAGLLNQGYVETSNVNVVEELVNMIQTQRAYEINSKAIQTSDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/157 (8%), Positives = 26/157 (16%), Gaps = 33/157 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRARAVFEDLLYQTIRQPGAQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L +A F + Sbjct: 61 QLPSGLQIGTGVKPVATERI---FTQGNLQQTGNAKDVAIQGNGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + S + + A+ Sbjct: 112 TSYTRDGSFMADANGQLVTASGYAVQPAITIPADTQT 148 >gi|109946869|ref|YP_664097.1| flagellar basal body rod protein FlgG [Helicobacter acinonychis str. Sheeba] gi|109714090|emb|CAJ99098.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] Length = 262 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 66/261 (25%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + V F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210 >gi|50954410|ref|YP_061698.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950892|gb|AAT88593.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 390 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 36/371 (9%), Positives = 89/371 (23%), Gaps = 4/371 (1%) Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + N + ++A V ++ +V A + + + + + Sbjct: 22 TANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIGGTTPAAVGLGVRAAGIDTDWT 81 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + D + + Sbjct: 82 QGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTTDDSGTLVTPDGARVQGWGAAG 141 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 V + + + A + + +++ D+ Sbjct: 142 GVVNSGVAPSTITIPLNVQSPAVATTSATATGNLPSDAAAGAVVSSSVRVHDAAGGERTL 201 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + G + + P F A GIS + Y Sbjct: 202 TLTFTSSGGGSWSVNAADANGATASGPLAFTAGARSTGGTLAVGGISVDMTQMTVYAGAT 261 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + S + + + VA + + ++ Sbjct: 262 SAGITKQNGSAAGALQSFTFDQDGTIEGSFSNGARLAIGRVAVATFSNPSGFQKAGSSAF 321 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +DS + + I+ V+L E + LI ++++ S ++I + Sbjct: 322 ----TATADSGIPQVAADSGTGTITVGAYEGSNVDLGREFTNLIVSQRAFQASARVITTS 377 Query: 469 DKMLQTLLEGV 479 D++LQ L + Sbjct: 378 DEILQELTQLK 388 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 16/332 (4%), Positives = 60/332 (18%), Gaps = 32/332 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 +L + NI N + + + Sbjct: 1 MLRSLDSGVFGLQAQQTMLDVTANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIG 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 T A + + + Sbjct: 61 GTTPAAVGLGVRAAGIDTDWTQGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTT 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + ++ +++ A + Sbjct: 121 DDSGTLVTPDGARVQGWGAAGGVVNSGVAPSTITIPLNVQSPAVATTSATAT-------- 172 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + A+ + D + + + ++ + + ++G T Sbjct: 173 -----GNLPSDAAAGAVVSSSVRVHDAAGGERTLTLTFTSSGGGSWSVNAADANGATASG 227 Query: 230 TVP------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 + + +V ++ + + G +++ +D + Sbjct: 228 PLAFTAGARSTGGTLAVGGISVDMTQMTVYAGATSAGITKQNGSAAGALQSFTFDQDGTI 287 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 + +A + + +P Sbjct: 288 EGSFSNGARLAIGRVAVATFSNPSGFQKAGSS 319 >gi|88704304|ref|ZP_01102018.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] gi|88701355|gb|EAQ98460.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] Length = 243 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 K A + F + D + + S I ++ + Sbjct: 63 FTQGNLTKTDGALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGYQLQPPI 122 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V A + + + L N +LE S Sbjct: 123 TVPQDALSVTIAADGTVSVQQPGTAAATQIGLVQLTDFINPAGLQARGENL--FLESGAS 180 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + +S+ Y + VN+ EEL +I+ +++Y ++++ I D+MLQ + Sbjct: 181 GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIETQRAYEMNSRAISTADQMLQYIS 240 Query: 477 E 477 Sbjct: 241 N 241 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 11/144 (7%), Positives = 28/144 (19%), Gaps = 27/144 (18%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI------------------SPENVTVVTQRSENKN- 61 ++I N+ N + R + P + + T Sbjct: 1 MSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDTLLPSGLQIGTGTRVVATE 60 Query: 62 --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 L A+ + F + N + + + + Sbjct: 61 RLFTQGNLTKTDGALDIAIQGRGFFEIL------LPDGNQAFTRDGSFQINDQGIVVTSA 114 Query: 120 EDILGKTVIDNAEEVVQNFNTSAR 143 L + + + Sbjct: 115 GYQLQPPITVPQDALSVTIAADGT 138 >gi|317013400|gb|ADU84008.1| flagellar basal body rod protein FlgG [Helicobacter pylori Lithuania75] Length = 262 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 66/261 (25%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGNAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS + D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGNAIVGNPDSQG 210 >gi|148266214|ref|YP_001232920.1| hypothetical protein Gura_4204 [Geobacter uraniireducens Rf4] gi|146399714|gb|ABQ28347.1| protein of unknown function DUF1078 domain protein [Geobacter uraniireducens Rf4] Length = 294 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 54/224 (24%) Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 S V I+ + A +L + + N G Sbjct: 71 GSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVDKTLTMVNPDG 130 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + D + G + + P+ L + G Sbjct: 131 YQVLDTAGNPIQFSNTGAAPATDFAKIVKIEPNGLITYLAQDGITTNYYNASGGVGVATT 190 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + A + + + + I + Sbjct: 191 PANAATVQRLAVVSAADVTGLEKAGGSLYTPTASSGVSAAAFSLAGNQPNGTSEKILSNS 250 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ + +I +++Y+ ++K I D+M Q +L + Sbjct: 251 LEQSNVDMASQFVKMIITQRAYSANSKTITTADEMTQEILSLKR 294 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/200 (9%), Positives = 43/200 (21%), Gaps = 10/200 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTV 52 MS+ + N + I NI N + + T+ + + Sbjct: 1 MSITGAMFTGVSGLLNNGEAMNVIGNNISNVNTIGFKYGRTLFSDMLSANIGNDSQVGRG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDS 110 V + + SF ALK + N + Sbjct: 61 VQMQKVENIFGSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 N + T + + + + ++ + + I + Sbjct: 121 KTLTMVNPDGYQVLDTAGNPIQFSNTGAAPATDFAKIVKIEPNGLITYLAQDGITTNYYN 180 Query: 171 TVVNDAIKFKTASKHDAHDF 190 + A+ Sbjct: 181 ASGGVGVATTPANAATVQRL 200 >gi|297538898|ref|YP_003674667.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] gi|297258245|gb|ADI30090.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] Length = 260 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ ++ + F + D + S Q ++ F Sbjct: 76 ATERIFSQGNLQQTSNNKDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQLVTSSGFP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + I + +A L N ++ Sbjct: 136 VQPAITVPANAESFTVGRDGTVSITTTGSTATTQIGTLQLATFINTAGLQGKGENL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + ++ +++ Y T VN+ EEL +I+ +++Y I++K I +D+M Sbjct: 194 ETTASGNPTVNNPGTNGAGLLTQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQKLTQM 260 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 27/155 (17%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQTSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+ F + Sbjct: 61 QLPSGLQLGTGVRPVATERI---FSQGNLQQTSNNKDVAIQGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + S + + A Sbjct: 112 TAYTRDGSFQTDSQGQLVTSSGFPVQPAITVPANA 146 >gi|149194278|ref|ZP_01871375.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] gi|149135453|gb|EDM23932.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] Length = 262 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 64/217 (29%), Gaps = 2/217 (0%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 + + + + ++ ++ + F + Sbjct: 48 TMEYAGTATSTTTKSPTGINVGLGVRPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + + + + ++ + V I + Sbjct: 108 PDGRIGYTRDGAFKLDADGNIVTSDGYKLIPNITLPPDTVQVSIGTDGTVSILQAGQTQM 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +A L N ++ + S + + Q I + + V Sbjct: 168 QQIGQIQLAKFINPAGLHSLGSNL--YINTSASGDPIVDVPGQTGLGEIRQGFIEMSNVQ 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L EE++ LI +++Y+ ++K IM +D+MLQT+ + Sbjct: 226 LVEEMTDLITGQRAYDAASKAIMTSDEMLQTVNNLKR 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 20/216 (9%), Positives = 50/216 (23%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y ++ Sbjct: 1 MVRSLYTAATGMMAQQTQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTATSTTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K L ++ + F ++ Sbjct: 61 KSPTGINVGLGVRPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQ------LPDGRIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE--VQKIRADADKEIELE 159 + + L + + V + T +Q + + +++ Sbjct: 115 TRDGAFKLDADGNIVTSDGYKLIPNITLPPDTVQVSIGTDGTVSILQAGQTQMQQIGQIQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++ ++ ++ +AS D Q Sbjct: 175 LAKFINPAGLHSLGSNLYINTSASGDPIVDVPGQTG 210 >gi|146307867|ref|YP_001188332.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina ymp] gi|145576068|gb|ABP85600.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + F D + S + + Q ++ F Sbjct: 77 TQKIFTAGSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRDGSFHLNSDGQIVTSQGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V + + + + +A L N +LE Sbjct: 137 EPAIVLPNEVRTFTVGEDGTVSVTTAGNPQPQIIGNIQLADFVNPAGLEAIGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + ++ V++ EEL +I +++Y +++K+I D+ML Sbjct: 195 TGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/252 (7%), Positives = 53/252 (21%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L ++ + +I N+ N + R Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQSSQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97 V VV + L + + F + + + + Sbjct: 61 ELPSGLQLGTGVRVVGTQKI---FTAGSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRD 117 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S + + ++ + + + E T+A Q + + Sbjct: 118 GSFHLNSDGQIVTSQGFALEPAIVLPNEVRTFTVGEDGTVSVTTAGNPQPQIIGNIQLAD 177 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + + L + S + + +V Sbjct: 178 FVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQ 237 Query: 218 VVYTSDGTTLFE 229 Y + + Sbjct: 238 RAYEMNSKVIST 249 >gi|1196326|gb|AAB51418.1| flagellar hook protein [Borrelia burgdorferi] Length = 372 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 27/362 (7%), Positives = 77/362 (21%), Gaps = 21/362 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE + + Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKKVTFACNL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + A+ D + L + + + + + T L Sbjct: 181 DKRL--PLIQEGANPADIARGTWVVNKSLYDSFGNVSVLELRVVKDLNTPNLWNATVLIN 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA------LLQIRDSVV 283 ++ + N + + G + ++ V Sbjct: 239 GEQNSNFTLGFDNEGALASLNGQPGQKGDILQIPITFNVLGANVGEVGETQTVNLKLGTV 298 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + + + + A +D + I + + + I + Sbjct: 299 GSYTDSITQFADSSSTKAIIQDGYGMGYMENYEIDQDGVIVGIYSNGIRRDLGKIALASF 358 Query: 344 YR 345 Sbjct: 359 MN 360 >gi|239907792|ref|YP_002954533.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797658|dbj|BAH76647.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 260 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 +S P+ N L RN S + + +++ + Sbjct: 161 ANSAELAATDIPLYTFINNAGLTAEGRNLYST--SQASGAANEVTPGNQNAGTLAQGFLE 218 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V L +E+ LI +++Y ++K I D MLQT + + Sbjct: 219 MSNVELVDEMVGLIVGQRAYEANSKSITTADGMLQTAVNIKR 260 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 8/136 (5%), Positives = 23/136 (16%), Gaps = 14/136 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 ++ A Q ++ N+ N + + + V Sbjct: 1 MMRSLWTASTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETVGGN 60 Query: 57 SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + + + E D + Sbjct: 61 RLPTGLQVGLGVKPTTVHKFFTQGDMQNTGNQLDIAIQGEGFFKVDVNGRELYTRAGSFK 120 Query: 109 DSLESYSKNLSEDILG 124 + + + L Sbjct: 121 LNQDGTIVTANGYPLQ 136 >gi|229591869|ref|YP_002873988.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens SBW25] gi|229363735|emb|CAY51140.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 261 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q+ + ++ + F D + + + N Q + Sbjct: 73 QIVGTQKNFSAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVTAN 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 F + V I + ++ A L N Sbjct: 133 GFALEPAVVVPADAKTFTVGNDGTVSITVAGNPASQVIGNLQTADFINPAGLQAMGNNL- 191 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +LE S + + F +S T V+ EE+ +I +++Y +++K+I Sbjct: 192 -FLETASSGAPQIGTPGLNGFGTTLQSTLETSNVSTVEEMVNMITTQRAYEMNSKVISTA 250 Query: 469 DKML 472 D+ML Sbjct: 251 DQML 254 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 18/245 (7%), Positives = 48/245 (19%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A+ + +I N+ N + R Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + L + + F + + Sbjct: 61 ELPSGLQLGTGVQIVGTQKN---FSAGNLQQTGQPLDMAINGRGFFQILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-- 156 + + L V+ A+ + + ++ Sbjct: 112 TSYTRDGTFHLDSNGQIVTANGFALEPAVVVPADAKTFTVGNDGTVSITVAGNPASQVIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 L+ ++ + N+ +S S + + Sbjct: 172 NLQTADFINPAGLQAMGNNLFLETASSGAPQIGTPGLNGFGTTLQSTLETSNVSTVEEMV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMITT 236 >gi|26991074|ref|NP_746499.1| flagellar basal body rod protein FlgG [Pseudomonas putida KT2440] gi|24986108|gb|AAN69963.1|AE016634_12 flagellar basal-body rod protein FlgG [Pseudomonas putida KT2440] Length = 261 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + F D + + + + Q ++ + Sbjct: 77 TQKSFVAGSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTDNGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100 P + V T + L + + + F + + + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Y+ + + + T+A + + Sbjct: 121 HLNSDGQIVTDNGYALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + A + + S + + +V Y Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240 Query: 221 TSDGTTLFE 229 + + Sbjct: 241 EMNSKVIST 249 >gi|218461124|ref|ZP_03501215.1| flagellar hook protein FlgE [Rhizobium etli Kim 5] Length = 91 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 P+A + + L + N +S I V+L EL Sbjct: 2 IPLANVASPDKLTLMSGNVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGEL 59 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I+ ++SY ++K+ ++ L+ + Sbjct: 60 TEMIESQRSYTANSKVFQTGSDIMDVLVNLKR 91 >gi|226944494|ref|YP_002799567.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719421|gb|ACO78592.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 260 Score = 73.5 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F + D + S + N Q ++ +L GG + +V Sbjct: 91 NSNDLAINGKGFFQVELPDGTTAYTRDGSFQLDENGQMVTSSGYLLMGGITIPENALSVT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ +A L N +LE S + + ++ Sbjct: 151 VSQDGIVSVTQPGNAQANQVGQLNLALFINPAGLQSVGENL--YLETASSGAPNENIPGT 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EE+ +I+ +++Y I++K + +D+ML L + Sbjct: 209 NGAGRLYQGYVETSNVNVVEEMVSMIQTQRAYEINSKAVETSDEMLARLTQL 260 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 23/239 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWTAKTGLESQQVQMDVIANNLANVATNGFKRTRAVFEDLLYQNLRQPGADNTTQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + G + K + + Sbjct: 61 KLPSGLQIGTGVR---PVATERLHSQGNLQGTENSNDLAINGKGFFQVELPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +L T+ +NA V + + Q A A++ +L ++ Sbjct: 118 GSFQLDENGQMVTSSGYLLMGGITIPENALSVTVSQDGIVSVTQPGNAQANQVGQLNLAL 177 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 +V + +S + + + V ++ T Sbjct: 178 FINPAGLQSVGENLYLETASSGAPNENIPGTNGAGRLYQGYVETSNVNVVEEMVSMIQT 236 >gi|217327976|ref|ZP_03444058.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588] gi|217318403|gb|EEC26829.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588] Length = 372 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 41/443 (9%), Positives = 86/443 (19%), Gaps = 80/443 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNQVNMQGLQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q IS ++ T +++ Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 S ++ ++ N + T + Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T +F V++SN + G I Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + Q + + + K Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +Y + + +A N L N W S L Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344 Query: 423 MKSQVVFNHISESYSNTVGVNLQ 445 F ++ V+L Sbjct: 345 TAGTGNFGTLTNGALEASNVDLS 367 >gi|238758108|ref|ZP_04619288.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] gi|238703646|gb|EEP96183.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] Length = 260 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D N + S + N Q ++ F + Sbjct: 94 DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQIQPAITIPANALKMTVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + N L N + E S + + Sbjct: 154 DGIVSVTLPGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNETTPGLNGG 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 15/205 (7%), Positives = 43/205 (20%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + + A + Sbjct: 118 GSFQVDQNGQLVTSGGFQIQPAITIPANALKMTVGRDGIVSVTLPGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202 >gi|313895783|ref|ZP_07829337.1| flagellar hook-basal body complex protein FlhP domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975208|gb|EFR40669.1| flagellar hook-basal body complex protein FlhP domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 117 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH- 422 ++ + Y + + VA L + N + E N S+ + Sbjct: 2 ASVSIDTSGVITGTYTNGVRRAEAQVAVAKFPNPSGLTKLGGNL--YQESNNSNVKTVQP 59 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I+ S V++ ++ S +I ++ + ++K+I +D+ML+TL+ + Sbjct: 60 QTVETAGAKITPSSLEMSNVDISDQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 117 >gi|78358198|ref|YP_389647.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220603|gb|ABB39952.1| Flagellar basal body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 261 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + P+ L RN +L S + + I++ + Sbjct: 162 NGEELAAADIPLYTFINPAGLQAAGRNL--YLASEASGVAVEGVPGEDNVGTIAQGFLEM 219 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + +E+ +I +++Y +++K I +D MLQT + + Sbjct: 220 SNVEVVDEMVNMIVGQRAYEMNSKAIQASDNMLQTATQLKR 260 Score = 60.4 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 9/143 (6%), Positives = 25/143 (17%), Gaps = 28/143 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A +I N+ N + + + Sbjct: 1 MMRSLWTAATGMIAQQLNIDTISNNLANVNTLGFKKSRAEFEDLMYQNMKIAGSVTGNDQ 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + F + Sbjct: 61 RIPTGIQVGLGVRPTTVHKFFTQGDYSNTGNPLDLAIEGDGFFQV-------TVNGEPAY 113 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + + + + L Sbjct: 114 TRAGAFKLNQDGTVVTANGYPLE 136 >gi|15612557|ref|NP_224210.1| flagellar basal body rod protein FlgG [Helicobacter pylori J99] gi|4156115|gb|AAD07066.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter pylori J99] gi|317015022|gb|ADU82458.1| flagellar basal body rod protein FlgG [Helicobacter pylori Gambia94/24] Length = 262 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210 >gi|91776311|ref|YP_546067.1| flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] gi|91710298|gb|ABE50226.1| Flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] Length = 261 Score = 73.5 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 5/174 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSKKF 361 N + + D ++ Q ++ ++ V Sbjct: 87 QQTGNNKDVAISGEGFFQVLLPDGSTAYTRDGAFQLDNQGQLVTASGFTVQPAIIVPPNA 146 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 L G ++ + +A L N ++E S ++ Sbjct: 147 LSLTVGRDGTVSVVLPDNPNNAVQIGTFQLATFINPAGLQSRGENL--YIETAASGPANI 204 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L Sbjct: 205 NQPGLNGTGLLVHQYLETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLQRL 258 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/262 (7%), Positives = 59/262 (22%), Gaps = 33/262 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N + + + Sbjct: 1 MIRSLWIAKTGLDAQQMQMDVIANNLANVSTNGFKKTRAVFEDLLYQNIRQPGAQSSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L + + F + + Sbjct: 61 QLPSGLQLGTGVRPVATERIH---IQGNLQQTGNNKDVAISGEGFFQVL------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + S + +I + + + + +++ Sbjct: 112 TAYTRDGAFQLDNQGQLVTASGFTVQPAIIVPPNALSLTVGRDGTVSVVLPDNPNNAVQI 171 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 L F++ + + + ++Q + + + T N + + Sbjct: 172 GTFQLATFINPAGLQSRGENLYIETAASGPANINQPGLNGTGLLVHQYLETSNVNVAEEL 231 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 V +E + I+ Sbjct: 232 VSMIQTQRAYEINSKAISTSDQ 253 >gi|330808197|ref|YP_004352659.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376305|gb|AEA67655.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 261 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + N Q + F Sbjct: 77 TQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVNASGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + I + ++ A L N +LE Sbjct: 137 EPAIIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQTADFINPAGLQAVGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F ++ T V+ EE+ +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 52/242 (21%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + +I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQVKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N L + + F + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQ------PDGTTSY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 N S L +I ++A+ + + + L+ Sbjct: 115 TRDGTFHLDSNGQIVNASGFALEPAIIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ V N+ AS + + + ++ Sbjct: 175 TADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 TT 236 >gi|308185371|ref|YP_003929504.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] gi|308061291|gb|ADO03187.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] Length = 262 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVKLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210 >gi|149184207|ref|ZP_01862525.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] gi|148831527|gb|EDL49960.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] Length = 261 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 20/190 (10%), Positives = 46/190 (24%), Gaps = 2/190 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + S D + + G + + + Sbjct: 72 DLAITGDGFFTTRSAADGSTLYTRSGSFSLSGTGNIVDSSGNRLQLFPVDANGQVTGNTL 131 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + Y D + +A L + Sbjct: 132 GDANLPPQNLAGSEFVGVTINEVGVVSASYADGSVEPVGAIALATFIAPTGLKKVGDA-- 189 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 W S + + + V++ EEL LI ++++ + K I Sbjct: 190 NWEGTGLSGAATYGSPGTGAYGSLLSGALERSNVDIAEELVGLITAQRNFQANAKAIDTA 249 Query: 469 DKMLQTLLEG 478 ++ QT++ Sbjct: 250 TQISQTVINL 259 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 16/182 (8%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQRSENKNMF 63 NA I NI N++ + R T + + +S +N Sbjct: 1 MKNAQTSLGVISHNIANSETYGFKRSRTEFSEIVAGSALTNPRMIQGIGASVKSITQNFA 60 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + SA+ F + ++ S + S + L Sbjct: 61 LGPIEQTGSALDLAITGDGFFTTRSA-----ADGSTLYTRSGSFSLSGTGNIVDSSGNRL 115 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 +D A V + + + + I+ + + + A Sbjct: 116 QLFPVD-ANGQVTGNTLGDANLPPQNLAGSEFVGVTINEVGVVSASYADGSVEPVGAIAL 174 Query: 184 KH 185 Sbjct: 175 AT 176 >gi|295097201|emb|CBK86291.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 RV + F + D + N Q + Sbjct: 76 STQRVHTQGGLNMTGNDTDVAIEGKGFFQVQLPDGSTAYTRDGHFDKNENGQLVNAEGHP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G V + ++ + + + +A + L N + Sbjct: 136 ILPGVVVPQDAKEMQISPDGIVSVTLPGQAQPQQVGQLTLATFVNDAGLESIGGNL--YR 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + Y T VN+ EEL +I+V+++Y I++K + +D+M Sbjct: 194 ETQSSGAPNELNPGLEDAGTLKQKYIETSNVNVAEELVNMIQVQRAYEINSKAVSASDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/246 (8%), Positives = 51/246 (20%), Gaps = 39/246 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVNTNGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + + L+ + + F ++ + Sbjct: 61 TLPSGLQLGTGVRPVSTQRVH---TQGGLNMTGNDTDVAIEGKGFFQVQ------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVI-----DNAEEVVQNFNTSAREVQKIRADAD 153 + + N + V+ + + Q Sbjct: 112 TAYTRDGHFDKNENGQLVNAEGHPILPGVVVPQDAKEMQISPDGIVSVTLPGQAQPQQVG 171 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + N S + + A D L QK E ++ Sbjct: 172 QLTLATFVNDAGLESIGGNLYRETQSSGAPNELNPGLEDA-GTLKQKYIETSNVNVAEEL 230 Query: 214 NNDMVV 219 N + V Sbjct: 231 VNMIQV 236 >gi|332305617|ref|YP_004433468.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172946|gb|AEE22200.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] Length = 262 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 69/213 (32%), Gaps = 3/213 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ A ++ ++ +++ + A + F D Sbjct: 50 NQPGGRSSADTELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + T+ Q + + +++ ++ ++ + + Sbjct: 110 GTIAYTRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + + + + T VN+ Sbjct: 170 VLGQISLSDFVNMTGLQPIGQNL--YVETATSGAPIQGVPGLEGLGTVVQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EEL LI+ ++ Y +++K+I D ML +++ Sbjct: 228 TEELVNLIESQRLYEMNSKVISAVDSMLGQVIQ 260 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 53/208 (25%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49 + ++ + A A I N+ NA + + + P Sbjct: 1 MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K + +A+ + F +++ Sbjct: 61 ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEI 160 + + E L + I E+ Q + EV IR AD ++ +I Sbjct: 115 TRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQI 174 Query: 161 ---SNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ T+ Sbjct: 175 SLSDFVNMTGLQPIGQNLYVETATSGAP 202 >gi|294828153|ref|NP_712848.2| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Lai str. 56601] gi|293386000|gb|AAN49866.2| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 G F G + SN L + + + N + Sbjct: 94 MAITGEMGFFKIQMPDGSFAFTRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 153 Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + ++ D + L +N + E S Sbjct: 154 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 211 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ + + V + EE+ +I +++Y ++K I +D ML T + + Sbjct: 212 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 264 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 26/153 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------P 47 A +I N+ N + + + P Sbjct: 3 SLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIP 62 Query: 48 ENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R+ A + + + +M + Sbjct: 63 TGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAFTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + +L +I ++ Sbjct: 118 GSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 150 >gi|121596119|ref|YP_988015.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|222112274|ref|YP_002554538.1| flagellar basal-body rod protein flgg [Acidovorax ebreus TPSY] gi|120608199|gb|ABM43939.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|221731718|gb|ACM34538.1| flagellar basal-body rod protein FlgG [Acidovorax ebreus TPSY] Length = 260 Score = 73.1 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + +R ++ + + F + D + + + + ++ Sbjct: 73 NVVATSRNFTQGSLQQSGNSLDVAIDGNGFFEVQLPDGTTGYTRDGAFKLDSQGRVVTSS 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G ++ + + + ++ + L +N Sbjct: 133 GLPVAPGITVPADAKSISISERGMVSVTVAGNPNPQQIGQLGMSSFINSAGLEPVGQNL- 191 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + E S + I + + VN+ EEL +I+ +++Y +++K I + Sbjct: 192 -YRESAASGAPQQAEPGTNGLGIIKQGFLENSNVNVVEELVTMIQTQRAYEMNSKAIQTS 250 Query: 469 DKMLQTL 475 D+ML L Sbjct: 251 DQMLAKL 257 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 31/155 (20%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ Q I N+ N + R + + Sbjct: 1 MMNSLWIAKTGMTAQQTQLDVISHNLANVSTTGFKRNNAVFEDLIYQNLRQVGSQTTEEN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV L +++ F ++ Sbjct: 61 QLPTGLHLGLGVNVVATSRN---FTQGSLQQSGNSLDVAIDGNGFFEVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + S + + A+ Sbjct: 112 TGYTRDGAFKLDSQGRVVTSSGLPVAPGITVPADA 146 >gi|108563958|ref|YP_628274.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPAG1] gi|207092034|ref|ZP_03239821.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_AG0C1] gi|208435465|ref|YP_002267131.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210135763|ref|YP_002302202.1| flagellar basal body rod protein FlgG [Helicobacter pylori P12] gi|217031740|ref|ZP_03437244.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254780116|ref|YP_003058223.1| flagellar basal body rod protein FlgG [Helicobacter pylori B38] gi|298737122|ref|YP_003729652.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|107837731|gb|ABF85600.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|208433394|gb|ACI28265.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210133731|gb|ACJ08722.1| flagellar basal-body rod protein [Helicobacter pylori P12] gi|216946587|gb|EEC25187.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254002029|emb|CAX30288.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Helicobacter pylori B38] gi|298356316|emb|CBI67188.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|307638271|gb|ADN80721.1| Flagellar basal-body rod protein [Helicobacter pylori 908] gi|317010275|gb|ADU80855.1| flagellar basal body rod protein FlgG [Helicobacter pylori India7] gi|317011821|gb|ADU85568.1| flagellar basal body rod protein FlgG [Helicobacter pylori SouthAfrica7] gi|325996863|gb|ADZ52268.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325998456|gb|ADZ50664.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 262 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T+ I+ N V + Q Sbjct: 4 SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + + + ++ ++ + F + D + + + Sbjct: 64 DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 ++ +L + V + + + +A Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N N S + + + + V L EE++ LI +++Y Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 ++K I D MLQT+ + Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + NI N + + + Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP+ + V K + + + F ++ + Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + +L T+ ++ +V + + Q ++ ++ ++ Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++N ++ ++ AS D + Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210 >gi|182418417|ref|ZP_02949711.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237666503|ref|ZP_04526488.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377799|gb|EDT75343.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237657702|gb|EEP55257.1| flagellar basal-body rod protein FlgG [Clostridium butyricum E4 str. BoNT E BL5262] Length = 379 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 4/257 (1%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L IN+ + ++ + E N + DG + +A + + Sbjct: 124 LIGGNGMAINYTRDGNFQLDYEGNLVTSDGYRIMGYPLTATQPKTGTDTVPASGAAADGG 183 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 E+ + I S + +++ V + P Sbjct: 184 SISNKEVTKTGIDSVEPGSAVYVDADGVLKAASDTLQPLRIP-DSVFVPGDTTATPATED 242 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + ++ + V L SF + G V+ Sbjct: 243 SWQKVQSFTIGKDGVITAVLANGKRTALGQVAMASFKNPAGLTAIGGNLYEVSANSGEVL 302 Query: 407 SIGWLEKNRSDSHDLHMK---SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + ++ + F I + V+L E+ + +I +S+ S+K Sbjct: 303 IKTSVNIDKKADGTADTTTFDNSKGFGDIIQGCLEASNVDLTEQFTDMITATRSFQASSK 362 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D++LQT+ ++ Sbjct: 363 MITTGDEILQTITGLMR 379 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 28/389 (7%), Positives = 77/389 (19%), Gaps = 35/389 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L + Q+ I NI N + + Sbjct: 1 MLRCMYSGISGMKVNQQKLDVIGNNIANVGTTAFKSSRAEFSDMLYQNAGVATSPTSNKG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + M + + + + + + + Sbjct: 61 GTNAKQVGLGAKLASIDRV---MSQGNALSTGRTLDACVDGEGYFIVGNGLVDYTGAGTT 117 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 T + + + + + + + + D Sbjct: 118 VTKDGKLIGGNGMAINYTRDGNFQLDYEGNLVTSDGYRIMGYPLTATQPKTGTDTVPASG 177 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + +S V I D + + V Sbjct: 178 AAADGGSISNKEVTKTGIDSVEPGSAVYVDADGVLKAASDTLQPL---------RIPDSV 228 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + TT + + + +G + Q + L I Sbjct: 229 FVPGDTTATPATEDSWQKVQSFTIGKDGVITAVLANGKRTALGQVAMASFKNPAGLTAIG 288 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 ++ + N + + + + + D A + D I+ ++E Sbjct: 289 GNLYEVSANSGEVLIKTSVNIDKKADGTADTTTFDNSKGFGDIIQGCLEASNVDLTEQFT 348 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + L + L Sbjct: 349 DMITATRSFQASSKMITTGDEILQTITGL 377 >gi|262273527|ref|ZP_06051341.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262222505|gb|EEY73816.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 243 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 50/174 (28%), Gaps = 2/174 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + A + + G F + D + + Sbjct: 65 SGAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAGLPLVPNIEI 124 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + I ++ + + L N + E S + Sbjct: 125 PENALSFTVGKDGIVNITMPGEAEPQEIGQLTLVNFTNPAGLEGLGGNL--FRETGASGA 182 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + ++S+ V++ EE+ +I +++Y ++ K++ D+ML Sbjct: 183 PIEGVPGEEGLGYLSQYALEGSNVSVVEEMVNMITTQRAYEMNAKVVSSADQML 236 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/161 (6%), Positives = 33/161 (20%), Gaps = 15/161 (9%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQRSENKNMFDKV 66 I N+ N + + + + V Q Sbjct: 1 MQVISNNLANVNTVGFKQDRVVFEDLFYQTKKQPGAMADQQNEVPGGIQLGNGVRTVGTQ 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S A + + + ++ + + E + L Sbjct: 61 KLMRSGAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAGLPLVP 120 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + +A+ + +++ + Sbjct: 121 NIEIPENALSFTVGKDGIVNITMPGEAEPQEIGQLTLVNFT 161 >gi|116331368|ref|YP_801086.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125057|gb|ABJ76328.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 264 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 G F G + SN L + + + N + Sbjct: 94 MAITGEMGFFKIQMPDGSFAFSRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 153 Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + ++ D + L +N + E S Sbjct: 154 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 211 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ + + V + EE+ +I +++Y ++K I +D ML T + + Sbjct: 212 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 264 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 26/153 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------P 47 A +I N+ N + + + P Sbjct: 3 SLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIP 62 Query: 48 ENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V V R+ A + + + +M + Sbjct: 63 TGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAFSRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + +L +I ++ Sbjct: 118 GSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 150 >gi|109899400|ref|YP_662655.1| flagellar basal body rod protein FlgG [Pseudoalteromonas atlantica T6c] gi|109701681|gb|ABG41601.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas atlantica T6c] Length = 262 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 69/213 (32%), Gaps = 3/213 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ A ++ ++ +++ + A + F D Sbjct: 50 NQPGGRSSADTELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + T+ Q + + +++ ++ ++ + + Sbjct: 110 GSIAYTRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + + + + T VN+ Sbjct: 170 VLGQISLSDFVNMTGLQPIGQNL--YVETATSGAPIQGVPGLEGLGTVVQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EEL LI+ ++ Y +++K+I D ML +++ Sbjct: 228 TEELVNLIESQRLYEMNSKVISAVDSMLGQVIQ 260 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 54/208 (25%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49 + ++ + A A I N+ NA + + + P Sbjct: 1 MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K + +A+ + F +++ + Sbjct: 61 ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQ------PDGSIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEI 160 + + E L + I E+ Q + EV IR AD ++ +I Sbjct: 115 TRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQI 174 Query: 161 ---SNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ T+ Sbjct: 175 SLSDFVNMTGLQPIGQNLYVETATSGAP 202 >gi|769850|gb|AAA91361.1| flagellar distal rod protein [Borrelia burgdorferi N40] Length = 372 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 27/328 (8%), Positives = 71/328 (21%), Gaps = 21/328 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + N + + NI N + + + R + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 62 ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + A + N Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + N + + + + E + NT++ I DKE N+ + Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNITFACNL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + AS D + L + + + + + T L Sbjct: 181 DKRL--PLIQEGASPADIARGTWVVNKSLYDSFGNVSVLELRVVKDLNTPNLWNATVLIN 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA------LLQIRDSVV 283 ++ + N + + G + ++ V Sbjct: 239 GEQNSNFTLGFDNEGALASLNGQPGQKGDILQIPITFNVLGANVGEVGEQQTVNLKLGTV 298 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNS 311 + + + + A +D Sbjct: 299 GSYTDSITQFADSSSTKAIIQDGYGMGY 326 >gi|45657204|ref|YP_001290.1| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600442|gb|AAS69927.1| FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 265 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 G F G + SN L + + + N + Sbjct: 95 MAITGEMGFFKIQMPDGSFAFTRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 154 Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + ++ D + L +N + E S Sbjct: 155 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 212 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ + + V + EE+ +I +++Y ++K I +D ML T + + Sbjct: 213 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 265 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 26/156 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A +I N+ N + + + Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 47 --PENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V R+ A + + + +M + Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + +L +I ++ Sbjct: 116 TRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 151 >gi|16760055|ref|NP_455672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764535|ref|NP_460150.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142174|ref|NP_805516.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413834|ref|YP_150909.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179696|ref|YP_216113.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614598|ref|YP_001588563.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553033|ref|ZP_02346783.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994043|ref|ZP_02575135.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234105|ref|ZP_02659163.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237261|ref|ZP_02662319.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244778|ref|ZP_02669710.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264028|ref|ZP_02686001.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467131|ref|ZP_02700973.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822622|ref|ZP_02834622.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446556|ref|YP_002040433.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450313|ref|YP_002045178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472223|ref|ZP_03078207.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734396|ref|YP_002114178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251031|ref|YP_002146864.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262058|ref|ZP_03162132.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362757|ref|YP_002142394.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390304|ref|ZP_03216915.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857313|ref|YP_002243964.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424682|ref|ZP_03357447.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582039|ref|ZP_03363865.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613179|ref|ZP_03371005.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648928|ref|ZP_03378981.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865503|ref|ZP_03387622.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584317|ref|YP_002638115.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911001|ref|ZP_04654838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289828578|ref|ZP_06546403.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392289|sp|P0A1J3|FLGG_SALTY RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|60392290|sp|P0A1J4|FLGG_SALTI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298926|pir||AD0640 flagellar basal-body rod protein FlgG (distal rod protein) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47677|emb|CAA36314.1| flgG protein product (AA 1-260) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419696|gb|AAL20109.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502349|emb|CAD08303.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137804|gb|AAO69365.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128091|gb|AAV77597.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127329|gb|AAX65032.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363962|gb|ABX67730.1| hypothetical protein SPAB_02348 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405219|gb|ACF65441.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408617|gb|ACF68836.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458587|gb|EDX47426.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709898|gb|ACF89119.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630467|gb|EDX49093.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094234|emb|CAR59739.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214734|gb|ACH52131.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240313|gb|EDY22933.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289797|gb|EDY29158.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602749|gb|EDZ01295.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322431|gb|EDZ10270.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328014|gb|EDZ14778.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331903|gb|EDZ18667.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336447|gb|EDZ23211.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341038|gb|EDZ27802.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347402|gb|EDZ34033.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709116|emb|CAR33449.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468844|gb|ACN46674.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246390|emb|CBG24199.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992953|gb|ACY87838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157720|emb|CBW17212.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912166|dbj|BAJ36140.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086381|emb|CBY96154.1| Flagellar basal-body rod protein flgG Distal rod protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223797|gb|EFX48860.1| Flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616549|gb|EFY13458.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620510|gb|EFY17374.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622504|gb|EFY19349.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629655|gb|EFY26430.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632625|gb|EFY29371.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636880|gb|EFY33583.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641582|gb|EFY38220.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644072|gb|EFY40618.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650028|gb|EFY46446.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653953|gb|EFY50276.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658485|gb|EFY54747.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663343|gb|EFY59545.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670077|gb|EFY66217.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674859|gb|EFY70950.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676671|gb|EFY72738.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682593|gb|EFY78612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686654|gb|EFY82633.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714166|gb|EFZ05737.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129449|gb|ADX16879.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195768|gb|EFZ80944.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198340|gb|EFZ83444.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323209179|gb|EFZ94116.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209683|gb|EFZ94612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217861|gb|EGA02576.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222149|gb|EGA06533.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224921|gb|EGA09179.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229663|gb|EGA13786.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232888|gb|EGA16984.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240623|gb|EGA24665.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242937|gb|EGA26958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250254|gb|EGA34143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252629|gb|EGA36467.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258843|gb|EGA42496.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261032|gb|EGA44625.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266941|gb|EGA50426.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269982|gb|EGA53431.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988070|gb|AEF07053.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 >gi|150019072|ref|YP_001311326.1| hypothetical protein Cbei_4260 [Clostridium beijerinckii NCIMB 8052] gi|149905537|gb|ABR36370.1| protein of unknown function DUF1078 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 363 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 22/257 (8%) Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP-IFQNQLDEMARVLIGSFSEK 304 ++ I + + + + G+I L RD + +Q L + + Sbjct: 107 GDLNSGIGANQSTGAPDTAATDATGEISETLFTRDGNLTLDYQGNLLTADGHRVMGYYLT 166 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + D ++ N P + D ++S Sbjct: 167 ASKNDGGTDNAKSLTYDSTNNVINANYVNADSKQLTVSDSTMRPLVIPDSVTISGTPGAA 226 Query: 365 VK--------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS--------- 407 + + D +A L + N Sbjct: 227 DAVTQPVKKFEIGKDGIITAVLGDGKRAAIGQIAMASFKNPEGLTDLGGNMCVNSSNSGP 286 Query: 408 ----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 G ++ + S S +Q F + + V+L E+ + +I +S+ ++K Sbjct: 287 IVYKTGKVDTSTSSSTTTATGNQGGFGSLIQGALEGSNVDLTEQFTDMITATRSFQAASK 346 Query: 464 LIMFTDKMLQTLLEGVK 480 +I D++LQT+ ++ Sbjct: 347 MITTGDEILQTITGLMR 363 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 25/307 (8%), Positives = 61/307 (19%), Gaps = 16/307 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + + I NI N + Sbjct: 1 MLRCMYSGISGMKVNQTKLDVIGNNIANVGTTAFKSSSARFKDMLY------------QN 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121 + S G A ++ N+ + S + + Y D Sbjct: 49 ASEATAPTSVLGGTNAKQIGLGAQVSSINKVMGQGNALSTGRSLDVCIDGDGYLVVAKGD 108 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + T A + + + Sbjct: 109 LNSGIGANQSTGAPDTAATDATGEISETLFTRDGNLTLDYQGNLLT---ADGHRVMGYYL 165 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + + + + + +I + + ++ + V S L I+ Sbjct: 166 TASKNDGGTDNAKSLTYDSTNNVINANYVNADSKQLTVSDSTMRPLVIPDSVTISGTPGA 225 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + VT I + + + I + + M S Sbjct: 226 ADAVTQPVKKFEIGKDGIITAVLGDGKRAAIGQIAMASFKNPEGLTDLGGNMCVNSSNSG 285 Query: 302 SEKDPIA 308 Sbjct: 286 PIVYKTG 292 >gi|218549194|ref|YP_002382985.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ATCC 35469] gi|218356735|emb|CAQ89363.1| flagellar component of cell-distal portion of basal-body rod [Escherichia fergusonii ATCC 35469] gi|324113873|gb|EGC07847.1| flagellar basal-body rod protein FlgG [Escherichia fergusonii B253] gi|325497614|gb|EGC95473.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ECD227] Length = 260 Score = 73.1 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YVETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 46/205 (22%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N ++ +++ + Sbjct: 178 FMNDTGLESIGENLYVETQSSGAPN 202 >gi|289548898|ref|YP_003473886.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] gi|289182515|gb|ADC89759.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] Length = 262 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 15/216 (6%), Positives = 48/216 (22%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + + + I N+ N + + + Sbjct: 1 MFRALWTSASGMSAQQTNLDVISHNMANVNTVGFKKMRPTFQDLLYQTVRDPGAPTSPTT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + + L + + F + Sbjct: 61 RAPSGFQIGLGVYISDTYGIFTQGNLFQTGNQLDLAIQGDGFFKVV------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN--FNTSAREVQKIRADADKEIELE 159 + R + N L + A+ + + + + +++ ++ +E Sbjct: 115 TRNGQFRLDADGRIVNPDGYPLDPEITVPADAISVSIGPDGTVSVLRQGATTVEEIGRIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++ + N+ AS D + Sbjct: 175 LAKFVNPAGLRRIGNNLFIQTDASGEPIVDNPGNQG 210 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 3/126 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + L +V + G ++ + + +A L N Sbjct: 132 DGYPLDPEITVPADAISVSIGPDGTVSVLRQGATTV-EEIGRIELAKFVNPAGLRRIGNN 190 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +++ + S + + + Y + VN+ EE+ LI ++++ ++K IM Sbjct: 191 L--FIQTDASGEPIVDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAFEFNSKGIM 248 Query: 467 FTDKML 472 D ML Sbjct: 249 AADDML 254 >gi|238785495|ref|ZP_04629478.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238713597|gb|EEQ05626.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S + N Q + F ++ Sbjct: 91 NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTASGFPVQPAITIPANALSMT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + + N L N + E S + + Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESMGENL--YQETASSGAPNDTTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 45/208 (21%), Gaps = 24/208 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLAKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + S + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTASGFPVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHD 189 + E N + ++ + Sbjct: 178 FINNSGLESMGENLYQETASSGAPNDTT 205 >gi|253996317|ref|YP_003048381.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] gi|253982996|gb|ACT47854.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] Length = 260 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 6/184 (3%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354 I + + + + D V+ Q S+ ++ Sbjct: 80 IFTQGNIQQTGNDKDVAIQGAGFFQVLLPDGTTAYTRDGAFQVDFQGQLVTSSGFSVQPP 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +V G + + + +A L N ++E Sbjct: 140 ITVPSNAQTLTVGRDGTVSVTLAGSTAVTQ-IGQLQLATFINPAGLQGNGENL--YVETA 196 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + + +++ Y T VN+ EEL +I+ +++Y I++K I +D+MLQ Sbjct: 197 ASGTANANTPGTNGAGLLTQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQMLQK 256 Query: 475 LLEG 478 L + Sbjct: 257 LTQM 260 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 13/214 (6%), Positives = 40/214 (18%), Gaps = 36/214 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQTSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + F + Sbjct: 61 QLPSGLQLGTGVRPVATERI---FTQGNIQQTGNDKDVAIQGAGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 + + + S + + + T + + A Sbjct: 112 TAYTRDGAFQVDFQGQLVTSSGFSVQPPITVPSNAQTLTVGRDGTVSVTLAGSTAVTQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N ++ + +A+ Sbjct: 172 QLQLATFINPAGLQGNGENLYVETAASGTANANT 205 >gi|323700468|ref|ZP_08112380.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. ND132] gi|323460400|gb|EGB16265.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans ND132] Length = 669 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 54/432 (12%), Positives = 132/432 (30%), Gaps = 38/432 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++N + NA + NI NAD Y R S + Sbjct: 2 INNLYNIGKTSLQNAQVSVNNASNNIANADTTGYQRTTVEYDTSSSITINGLTVGTGADI 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + +SE + + + Q + + + + + + + + D+ Sbjct: 62 TSIQSEWDKFVEAQYLDAVADLATQSSALDYLDQLDSLL--NQSDGGLSDVMEEFFDAWN 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ E +V N+++ + + + +I+ ++ + +S++ Sbjct: 120 ELVTDPDSLSAREDLLGTTETLVYALNSTSSTLDTMVETINADIQDQVDEANQLISDIAE 179 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 N AI D RD +++++ +IG+ + +++N + + T +G +L Sbjct: 180 ANAAIAANPDDNQAVSD----RDQMIRELDALIGVDVLYQSDNTVTILTEEGYSL----- 230 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 T N ++ D V S + G + + + ++ F + + Sbjct: 231 ----------VDGTDTHNLVYADIGVTQSLVRGSDYDGTLNFSGESGEELLIEFVSSGPD 280 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 S + L+ ADG + + + + Sbjct: 281 GTAQFKVSTDGGSTWLTDDNGDVMLYTADGEDNSVEIEGITLWFEDGTADHAEGDRYTVM 340 Query: 353 DG-------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 G K + + + +G S F +T L + A Sbjct: 341 AKSGLYWESGDGGLKNITPLTDDSGDNVSGRTSSGSLAGLFTVRDDTVYDTIAGLDDLAE 400 Query: 406 NSIGWLEKNRSD 417 + I + S Sbjct: 401 SIIWEVNSAHSQ 412 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 91/315 (28%), Gaps = 1/315 (0%) Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 D + +T+S A F + D + I+ + ++ + + G Sbjct: 356 NITPLTDDSGDNVSGRTSSGSLAGLFTVRDDTVYDTIAGLDDLAESIIWEVNSAHSQGAG 415 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 ++ + + ++ S + + + D Sbjct: 416 LEHHTSLTASYSVDDSSAMLSNSGLHYEDNIEAGELTLITYDADGNVSTTAILSIDPATD 475 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + ++ G + + + D L T Sbjct: 476 SLDDVAADINAAFAGELTATITDGQLILSSGTDMEFEVAGDTSGLLAALGLNTYFTGTD- 534 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + V G ++ S V T TL Sbjct: 535 AGTIGIDDYVTTNTSHLNTGVVGEDGLTSSGSNEVASIMAELGEQTVTVGGTETTLTSAL 594 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + + + S + +Q +++ E ++T VN+ EEL L K +Q+Y + ++ Sbjct: 595 ASLVASVGAAASAAELQQTYAQTSVDYLYEQQASTSEVNVDEELIELTKYQQAYEAAAQI 654 Query: 465 IMFTDKMLQTLLEGV 479 I T +M++T+L+ V Sbjct: 655 ISVTREMMETVLDMV 669 >gi|34558104|ref|NP_907919.1| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483822|emb|CAE10819.1| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinogenes] Length = 263 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 6/186 (3%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354 I S N + I+ D + + + S+ L Sbjct: 80 IFSQGNFKETGNNLDIAITGNGFFQIQLPDGTTAYTRNGAFKPDDEGNIVNSDGYRLIPE 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ + + G ++ N +A L N +L N Sbjct: 140 ITIPEDATQINIGVDGTVSVLQGNQTEVN-TIGQIEIATFINPAGLHSLGDNL--YLNTN 196 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + F + + + V L EE++ LI +++Y ++K I D MLQT Sbjct: 197 ASGDPIVDTPGLNGFGQLRQGFVELSNVKLVEEMTDLITGQRAYEANSKSIQTADSMLQT 256 Query: 475 LLEGVK 480 + + Sbjct: 257 VNSLKR 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 52/210 (24%), Gaps = 29/210 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y ++ Sbjct: 1 MMRALYTATTGMMGQQLQIDVTSNNIANVNTIGYKKQRAEFADLFYQVMEYAGSSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + F ++ + Sbjct: 61 LSPTGIEVGLGVRPTAITKIFSQGNFKETGNNLDIAITGNGFFQIQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + E N L T+ ++A ++ + + +Q + + + ++E Sbjct: 115 TRNGAFKPDDEGNIVNSDGYRLIPEITIPEDATQINIGVDGTVSVLQGNQTEVNTIGQIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 I+ ++ ++ AS D Sbjct: 175 IATFINPAGLHSLGDNLYLNTNASGDPIVD 204 >gi|88811803|ref|ZP_01127057.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] gi|88791194|gb|EAR22307.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] Length = 261 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 47/186 (25%), Gaps = 2/186 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ + A + F D + S I Q + Sbjct: 76 ATQKMFTQGNIVQTGNALDLAINGRGFFEILQPDGTLAYTRDGSFQIDDQGQVVTADGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 +V + + L RN ++ Sbjct: 136 LQPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVGNLRLTDFINPAGLKPIGRNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + + VN+ EEL +I+ ++ + + + I D+M Sbjct: 194 QTGASGAPQPGTPGLNGLGLVQAGALESSNVNIAEELVNMIETQRGFETNTRAIQTADQM 253 Query: 472 LQTLLE 477 LQ + Sbjct: 254 LQFITN 259 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 11/212 (5%), Positives = 40/212 (18%), Gaps = 36/212 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + +++ N+ N + + + Sbjct: 1 MNPALWVAKTGLDAQQTRMSTVANNLANVNTTGFKKDRAKFEDLVYQTVRQAGGQSSQNN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + +A+ + F + + Sbjct: 61 RLPSGLMLGTGVRVAATQKM---FTQGNIVQTGNALDLAINGRGFFEILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 + + L + T + ++ A Sbjct: 112 LAYTRDGSFQIDDQGQVVTADGLPLQPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + N ++ + Sbjct: 172 NLRLTDFINPAGLKPIGRNLFVQTGASGAPQP 203 >gi|323204838|gb|EFZ89832.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 255 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 77 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 136 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 137 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 194 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 195 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 254 Query: 478 G 478 Sbjct: 255 L 255 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/197 (8%), Positives = 41/197 (20%), Gaps = 24/197 (12%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------TISPENVTV 52 + + I N+ N + R+ + T P + + Sbjct: 4 KTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQI 63 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 T + + LH+ + + S + Sbjct: 64 GTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQN 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + + A + + Q A + + E Sbjct: 121 GQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLE 180 Query: 170 LTVVNDAIKFKTASKHD 186 N I+ +++ + Sbjct: 181 SIGENLYIETQSSGAPN 197 >gi|238764394|ref|ZP_04625344.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] gi|238697420|gb|EEP90187.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] Length = 260 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S + N Q + F + Sbjct: 91 NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTASGFQVQPAITIPANALKMT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + + N L N + E S + + Sbjct: 151 IGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNETTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + S + + A + + + +Q A + Sbjct: 118 GSFQVDQNGQLVTASGFQVQPAITIPANALKMTIGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202 >gi|116327820|ref|YP_797540.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120564|gb|ABJ78607.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 G F G + SN L + + + N + Sbjct: 95 MAITGEMGFFKIQMPDGSFAFSRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 154 Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + ++ D + L +N + E S Sbjct: 155 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 212 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ + + V + EE+ +I +++Y ++K I +D ML T + + Sbjct: 213 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 265 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 26/156 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A +I N+ N + + + Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 47 --PENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V R+ A + + + +M + Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + +L +I ++ Sbjct: 116 SRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 151 >gi|238799109|ref|ZP_04642565.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238717056|gb|EEQ08916.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S + N Q ++ F ++ Sbjct: 91 NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITVPANALSMT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + + N L N + E S + + Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESIGENL--YQETASSGAPNETTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITVPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESIGENLYQETASSGAPN 202 >gi|299066542|emb|CBJ37732.1| Putative flagellar hook protein (flgE) [Ralstonia solanacearum CMR15] Length = 395 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/399 (8%), Positives = 91/399 (22%), Gaps = 8/399 (2%) Query: 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 L S + + ++ + + S D+ +A+ + Sbjct: 2 LDSIYIAMTGLHGYEEALRVISNDTTNMNTPGFKGSALQFSDLFYTNSGQSAQGGGHTAS 61 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 + + + + + V + K RD + Sbjct: 62 QLGFGLNTVGTLLNFKQGQMQTTGNDL-----DVAVDGQGLFVLKAADGSLRYTRDGQFK 116 Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259 ++ IS+ + + + + + ++ T + V Sbjct: 117 FNTDGNLISSTTGEQAMALDSAGNLAPVSIAALKTSAAKPTSTVTFSGNLPSTSTGQTVG 176 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S + S +GS + + + + Sbjct: 177 SVTVIDTAGGTHTLSAKLAPVSGKSGTWTVTLLDGTTTVGSGTIAFINGKPAPANATVSL 236 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + + + L+ Y Sbjct: 237 TYTPSGQSSMPLTLDFSNNVTSFDSGGQSTLAMASQNGYAAGNLTKTTFDSTGTLVLTYA 296 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + N+ + N + + + + F + Sbjct: 297 NGQTVKGAQLALGRFNSPDAVEAVGNN---EFKVVNGQAWETGVAGTGAFGTLHSGMVEN 353 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L +E S L+ +++ Y S++++ + ML L Sbjct: 354 SNVDLSQEFSNLVIMQRGYQASSQVVSTANDMLSELFSM 392 >gi|323175233|gb|EFZ60846.1| flagellar basal-body rod protein flgG domain protein [Escherichia coli LT-68] Length = 202 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 24 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 83 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 84 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 141 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 142 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 201 Query: 478 G 478 Sbjct: 202 L 202 >gi|238794000|ref|ZP_04637618.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] gi|238726632|gb|EEQ18168.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S + N Q ++ F ++ Sbjct: 91 NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITIPANALSMT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + + N L N + E S + + Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESIGENL--YQETASSGAPNETTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESIGENLYQETASSGAPN 202 >gi|317406199|gb|EFV86448.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans C54] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 2/132 (1%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + ++ +V L G + N +A L N Sbjct: 132 SGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSVGEN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +LE + S +L ++Y T VN+ EEL +I +++Y +++K + Sbjct: 192 L--YLETDASGPANLLQPGVDGAGTFMQNYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249 Query: 467 FTDKMLQTLLEG 478 +D+ML L + Sbjct: 250 TSDEMLARLTQL 261 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 56/246 (22%), Gaps = 35/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R + Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVATNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + L+ + + F ++ Sbjct: 61 QLPSGLQLGTGARVAATERIH---TTGGLNNTGGELDVAINGRGFLQVE------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ +S ++ V DNA + + Q A + +I Sbjct: 112 QAYTRDGALQRDQNGQLTTVSGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQI 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + L V + + +T + A+ D + + S + Sbjct: 172 GQLQIATFINPTGLQSVGENLYLETDASGPANLLQPGVDGAGTFMQNYVETSNVNVAEEL 231 Query: 217 MVVYTS 222 + + T+ Sbjct: 232 VNMITT 237 >gi|204930805|ref|ZP_03221678.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320264|gb|EDZ05468.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 >gi|77457729|ref|YP_347234.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf0-1] gi|77381732|gb|ABA73245.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + N Q + F Sbjct: 77 TQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVNASGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQTADFINPAGLQAVGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F ++ T V+ EE+ +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 52/242 (21%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + +I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N L + + F + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQ------PDGTTSY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 N S L ++ +NA+ + + A L+ Sbjct: 115 TRDGTFHLDSNGQIVNASGFALEPAIVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ V N+ AS + + + ++ Sbjct: 175 TADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 TT 236 >gi|254516991|ref|ZP_05129049.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] gi|219674496|gb|EED30864.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 K A + F + D + + S I ++ + Sbjct: 81 FTQGNLTKTDSALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGYQVQPPI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V + + + + L N +LE S Sbjct: 141 TVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQLTDFINPSGLQARGENL--FLESGAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + +S+ Y + VN+ EEL +I+ +++Y ++++ I D+MLQ + Sbjct: 199 GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIETQRAYEMNSRAISTADQMLQYIS 258 Query: 477 E 477 Sbjct: 259 N 259 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/222 (7%), Positives = 45/222 (20%), Gaps = 27/222 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + ++I N+ N + R + Sbjct: 1 MNQSLWISKTGLDAQQTKMSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L SA+ + F + N Sbjct: 61 LLPSGLQIGTGTRVVATEKLFTQGNLTKTDSALDIAIQGRGFFEIL------LPDGNQAF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + + + + + + A + Sbjct: 115 TRDGSFQINDQGIVVTSAGYQVQPPITVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQ 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 F + A + L +S+ Sbjct: 175 LTDFINPSGLQARGENLFLESGASGAPQPGNPGLNGLGTLSQ 216 >gi|198244335|ref|YP_002215958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938851|gb|ACH76184.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623706|gb|EGE30051.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 2/215 (0%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 P + + + + R+ + + + F + Sbjct: 48 TIRQPGAQSSGQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVML 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + + S + N Q + F ++ + + Sbjct: 108 PDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAP 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + L N ++E S + + + + Y T VN Sbjct: 168 VQVGQLNLTTFMNDTGLESIGENL--YIETQSSGAPNESTPGLNGAGLLYQGYVETSNVN 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 226 VAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSGQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 >gi|325274797|ref|ZP_08140825.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] gi|324100065|gb|EGB97883.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + F D + + + + Q + + Sbjct: 77 TQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/249 (7%), Positives = 52/249 (20%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQVKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100 P + V T + L + + + F + + + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Y+ + + T+A + + Sbjct: 121 HLNSDGQIVTANGYALEPAIVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQTADFIN 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + A + + S + + +V Y Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAY 240 Query: 221 TSDGTTLFE 229 + + Sbjct: 241 EMNSKVIST 249 >gi|238751764|ref|ZP_04613252.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] gi|238710035|gb|EEQ02265.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D N + S + N Q ++ F ++ Sbjct: 94 DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + N L N + E S + + Sbjct: 154 DGIVSVTLQGQTATQQVGQLTLTTFINNSGLESMGENL--YQETASSGAPNETTPGLNGG 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESMGENLYQETASSGAPN 202 >gi|87307400|ref|ZP_01089545.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] gi|87290140|gb|EAQ82029.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] Length = 929 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 41/438 (9%), Positives = 106/438 (24%), Gaps = 24/438 (5%) Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 V S+ L+ A ++ + S + R L+ + + ++ Sbjct: 494 NVYRNLSTDSASYYLVTELGAGEDFVDDRSDAEISDLTNSANRRIDLDGPKVDSNTLLVD 553 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 D + E +++ + + ++ + + Sbjct: 554 VVKRDGLNFESMFSEGTLTFKGSKGDRTLNEKTFTVTDTTIVQDLIEFLEASLGIQPSVN 613 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 +++ + + + ++ I VV + + + + Sbjct: 614 GNSNPIPGSENNIADETGDLSQGIYITTEGRIRVVSNNGVDNGVDIGLSSFQLDNGSGVV 673 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 N I V S + + + +R + V +N + + R S Sbjct: 674 QNPNLNFGVIQEAVGESAVADVIVYDSLGVPMNVRVTTVLESRNGTNTVYRWFADSPDND 733 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY-------------------- 344 G+ + + G+ D S+ V Sbjct: 734 GDTIGDESEAAKISVGTGLIYFDGDGNYIGSDNNTVTINRRNIPSESPLEFDLNFDQLSG 793 Query: 345 --RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + S N ++ + + +++ +A L + Sbjct: 794 LAADKATLNASRQDGSGTGKLNSFIISEDGIIRGVFSSGVDRDLGMIQLARFANPSGLEQ 853 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N S + I ++ L LI Y S+ Sbjct: 854 RGNNLFA--AGVNSGLPVQGDAGEEGIGSIIAGAVELSNTDIGGNLIDLILASTQYRGSS 911 Query: 463 KLIMFTDKMLQTLLEGVK 480 ++I ++ LL + Sbjct: 912 RIITTAQQLFDELLNIRR 929 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 37/391 (9%), Positives = 90/391 (23%), Gaps = 48/391 (12%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------------ISPENV 50 A Q + N+ N+ + D + V Sbjct: 1 MTAAETQIDVLGNNLANSQTVGFKASDALFANQFLQTRGLGSKPSETDGGTNPRQVGLGV 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V N + S+ F ++ + + Sbjct: 61 MVAEIT---PNFTQGTIEVSSNPSDLAIQGDGFFIVQGN------NGERLYTRNGIFKTN 111 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNF----------NTSAREVQKIRADADKEIELEI 160 + + + + ID + + A+ + + + ++ Sbjct: 112 SNNELVTIGGERVLGFGIDENFNIQETQLVPLTIPLGAAAVAKATENVYLEGTLPATGDL 171 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + + + + + N AI S A GI ++V+ + Sbjct: 172 ATVAQVIESAILGNSAIPRPDVSGASAIVAETPDDSSSTTDSVSTPGIGSVVQGQTEGAG 231 Query: 220 YTSDGT-----TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 DGT T + + N ++ + V+ Sbjct: 232 SVPDGTFDYRFTFSDAALANETQASANITVNVADLGDAIANNNTVTFAGAPQSSSHSQVN 291 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + + D F M + + ++ N+ G + D + Sbjct: 292 MYRSNDGGATYFLVSSTAMGAAVEDVAAAPTATQLSAANINGTGSGGVLGGGDVYEYRFA 351 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 N S+ + G+ + ++V Sbjct: 352 FVDADGNETVASDGQQITVDGAPADGNGYSV 382 >gi|294679031|ref|YP_003579646.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] gi|294477851|gb|ADE87239.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 61/218 (27%), Gaps = 8/218 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + D + Q+ R S + ++ L I Sbjct: 41 ADLMYQQATRPGTITANDGTIVPAGVQIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGY 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + T + ++ + G + + ++ Sbjct: 101 GFLEVTLPSGASAYTRDGGLKRSADGQIVTSDGYPVVPGITLPDDATTISINAAGEVYAY 160 Query: 383 NKNFIF------DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 N + +AG L N +LE S + + I + Y Sbjct: 161 FTNQVQPQLLGQITLAGFTNEKGLEAIGSNL--FLETEASGAPTVAAPGTDGLGVIKQGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 V+ E++ LIK ++ Y ++ K+I D+MLQ Sbjct: 219 LEESSVDAVREITELIKAQRGYEMNAKVITAADEMLQA 256 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 34/178 (19%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALQIAATGMSAQQMRVEVISNNLANMSTTGYNARRAEFADLMYQQATRPGTITANDGTIV 62 Query: 47 PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + L + + F + S Sbjct: 63 PAGVQIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGYGFLEV------TLPSGASAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ S + + + + + N + ++ +I+ Sbjct: 117 DGGLKRSADGQIVTSDGYPVVPGITLPDDATTISINAAGEVYAYFTNQVQPQLLGQIT 174 >gi|119503646|ref|ZP_01625729.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] gi|119460708|gb|EAW41800.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 53/190 (27%), Gaps = 2/190 (1%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++ R+ + + F+ + D + S I Sbjct: 68 VGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVLMPDGSQGFTRDGSFQINDQGV 127 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + + + ++ + + L Sbjct: 128 MVTAAGYQVQPPITIPQDALSISIAPDGTVSVQQPGTPQATQVGVIQLTDFVNPSGLQAR 187 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N +LE S + + + + VN+ EEL +I+ +++Y +++K Sbjct: 188 GENL--FLETGASGAPLPGNPGLNGLGTLQQGFVEGSNVNVVEELVNMIETQRAYEMNSK 245 Query: 464 LIMFTDKMLQ 473 I D+MLQ Sbjct: 246 AISTADQMLQ 255 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 34/153 (22%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + A+I N+ NA + R + Sbjct: 1 MSQSLWIAKTGLDAQQTKMATISNNLANAGTNGFKRGRVIFEDLLYQNVRQVGAQSSQDT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T L + + + F + + Sbjct: 61 VLPSGLQVGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVL------MPDGSQGF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + + + + + + Sbjct: 115 TRDGSFQINDQGVMVTAAGYQVQPPITIPQDAL 147 >gi|120554035|ref|YP_958386.1| flagellar basal body rod protein FlgG [Marinobacter aquaeolei VT8] gi|120323884|gb|ABM18199.1| flagellar basal-body rod protein FlgG [Marinobacter aquaeolei VT8] Length = 262 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 2/185 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F+ + D + + VN + +L Sbjct: 77 TVKQFSQGNLQITEQPLDMAINGRGFLQILLPDGQIAYTRDGQFQLNVNGDVVNPDGYLL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + N+ + N + L N + E Sbjct: 137 EPAINVPNNATNITIGTDGTVTAITDDQAAPVNVGQITLVDFINPQGLQAIGNNL--FKE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + I + V + EEL +I +++Y +++K++ D+ML Sbjct: 195 TISSGNPIEGQAGLLGLGTIEQGSLEASNVEVVEELVNMITTQRAYEMNSKVVSTADQML 254 Query: 473 QTLLE 477 Q + Sbjct: 255 QFITN 259 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/199 (7%), Positives = 37/199 (18%), Gaps = 36/199 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + ++I N+ N + + R + Sbjct: 1 MNPALWVSKTGLSAQDINMSTISNNLANVNTTGFKRDKAVFQDLLYQINRQPGGLSTQNS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV K L + + F + Sbjct: 61 ELPSGLQLGTGVRVVG---TVKQFSQGNLQITEQPLDMAINGRGFLQIL------LPDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + ++ N + + T A + Sbjct: 112 IAYTRDGQFQLNVNGDVVNPDGYLLEPAINVPNNATNITIGTDGTVTAITDDQAAPVNVG 171 Query: 156 IELEISNLRRFLSELTVVN 174 + + + N Sbjct: 172 QITLVDFINPQGLQAIGNN 190 >gi|224437199|ref|ZP_03658180.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313143665|ref|ZP_07805858.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313128696|gb|EFR46313.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] Length = 262 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 72/272 (26%), Gaps = 15/272 (5%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 D T+ ++K + + G S S Sbjct: 6 YTATTGMLGQQMQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETTISPTG 65 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +++ V P+ ++ + I GN L + Sbjct: 66 -------IEVGIGVRPVAVQKMFSQGHPKETENNLDVAITGNGFFQIELPDGNIAYTRAG 118 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + YR P G+ + + + F Sbjct: 119 SFKLDNNGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNVLGQIEIVNF 178 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 AG L N ++ N S + F + + + V L EE+ Sbjct: 179 INPAG------LHSLGDNL--FINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEM 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI +++Y ++K I D MLQT+ + Sbjct: 231 TDLITGQRAYEANSKSIQTADSMLQTVNGLKR 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/255 (9%), Positives = 52/255 (20%), Gaps = 34/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y ++ Sbjct: 1 MMRSLYTATTGMLGQQMQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + F ++ N Sbjct: 61 ISPTGIEVGIGVRPVAVQKMFSQGHPKETENNLDVAITGNGFFQIE------LPDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N L + N T + + +I Sbjct: 115 TRAGSFKLDNNGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNVLGQIE 174 Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + +N + D Q ++S + + + Sbjct: 175 IVNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLI 234 Query: 215 NDMVVYTSDGTTLFE 229 Y ++ ++ Sbjct: 235 TGQRAYEANSKSIQT 249 >gi|115523522|ref|YP_780433.1| flagellar basal body FlaE domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517469|gb|ABJ05453.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 602 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 72/261 (27%), Gaps = 9/261 (3%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 G L ++ + +D + SA + + + Sbjct: 349 GTGHVLGSDNQDFLDQSISGGAATAYDGAGGPVDLQFRWAKVDSATLGSPHQDVWNMFYQ 408 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV--PGLFIADGIKDLDNKLCQGISETIC 339 V P V + + + + + K+L + + Sbjct: 409 VSPTATGSAVAWQNVGVDFQFDSNGQMTSPTISKFTLPAVTVSGKNLGDLTLAIGGGGLT 468 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N + + +++ ++ Y + N + +A N Sbjct: 469 QFADTNGNVQVNQLQQNGFPAGTLKSVSVSNDGRVVGSYSNGRNIDLAEISIATFNGANF 528 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +++ IS S ++ +E + LI +Q+Y+ Sbjct: 529 LKRTDGGVF-------EATNESGEALYGKGGTISGSSLEASNTDIADEFTKLIVTQQAYS 581 Query: 460 ISNKLIMFTDKMLQTLLEGVK 480 + K+I + M+Q LL ++ Sbjct: 582 ANTKVITTANTMVQDLLNVMR 602 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/446 (9%), Positives = 104/446 (23%), Gaps = 21/446 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + S +I NI N+ + R D+ V Q + + Sbjct: 1 MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRIDSSFLDLIPQTGVNQQLAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109 + + ++ + + + Sbjct: 61 TFASRSTNTVQGSVSAASVSTFMAINGDGFFVVQKPGSFADNNPIFDGVNRYTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + + ID N Q ++ D+ S ++ + Sbjct: 121 DKNGYLVNGAGYYVQGVPIDTLTG-----NKVGDVPQVLKFKNDQLPSQATSTIQYRANL 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + K+ + + D D + + S + + + T + Sbjct: 176 ASYPLTTKHDKSVPGSELLNPADFVDNPRTTSTPAVPYSDNTKTGIAVNSKLTTPTAITG 235 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + T + I ++G ++ G A DS V ++ Sbjct: 236 ATLLSGGTNTDSIATSFGVGDAITVNGTTITFTA----SGGADDATHIPIDSTVTNLLSK 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +A + + S I ++ ++ L + I + Sbjct: 292 ITPLAGGVAPTISGTGAITLHTGTASNFQMSSTNTAALAALGFSGTVNIPRLGGGTAGTG 351 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE-YARNSI 408 + + A D D + D + + + + + S Sbjct: 352 HVLGSDNQDFLDQSISGGAATAYDGAGGPVDLQFRWAKVDSATLGSPHQDVWNMFYQVSP 411 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434 + + ++ Sbjct: 412 TATGSAVAWQNVGVDFQFDSNGQMTS 437 >gi|309388846|gb|ADO76726.1| flagellar basal-body rod protein FlgG [Halanaerobium praevalens DSM 2228] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + V ++ D + + S Sbjct: 80 IFTQGNIQNTDSPLDMVIEGDGLFRVQLPDGNFAYTRDGSFKQDSNGNVVTSDGYQLDPG 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + IN D N+ + L RN S Sbjct: 140 FQIPQEATEISITSDGTINALVDGENQQLGQIQLYRFANPAGLSSEGRNLYSD--TVASG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + F +++ + V + EE+ +I +++Y ++K I +D+MLQT + Sbjct: 198 QAMQGVPGEQGFGTVTQGFLEMSNVKVVEEMVNMIAAQRAYETNSKSIQASDEMLQTANQ 257 Query: 478 GVK 480 + Sbjct: 258 LKR 260 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 13/214 (6%), Positives = 42/214 (19%), Gaps = 27/214 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +++ + N+ I N+ N + + + Sbjct: 1 MISALWTSATGMNSQQTNIDVISNNLANVNTSGFKKSKINFADLIYTQMRQPGTPNAQGA 60 Query: 46 -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + S K + S + ++ N Sbjct: 61 EVPTGIEIGHGSKVNSTQKIFTQGNIQNTDSPLDMVIEGDGLFRVQ------LPDGNFAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + L E + + + + + ++++ Sbjct: 115 TRDGSFKQDSNGNVVTSDGYQLDPGFQIPQEATEISITSDGTINALVDGENQQLGQIQLY 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + AS ++ Sbjct: 175 RFANPAGLSSEGRNLYSDTVASGQAMQGVPGEQG 208 >gi|167034941|ref|YP_001670172.1| flagellar basal body rod protein FlgG [Pseudomonas putida GB-1] gi|166861429|gb|ABY99836.1| flagellar basal-body rod protein FlgG [Pseudomonas putida GB-1] Length = 261 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + F D + + + + Q + + Sbjct: 77 TQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100 P + V T + L + + + F + + + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Y+ + + + T+A + + Sbjct: 121 HLNSDGQIVTANGYALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + A + + S + + +V Y Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAY 240 Query: 221 TSDGTTLFE 229 + + Sbjct: 241 EMNSKVIST 249 >gi|312880335|ref|ZP_07740135.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] gi|310783626|gb|EFQ24024.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] Length = 262 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +A L +N +LE S + + + V Sbjct: 168 QEIGQIQLARFVNPGGLRASGKNL--FLETPASGAPIVGNPGDDGLGATLQRVLEMANVQ 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + EE+ +I +++Y ++K I D++L+ + Sbjct: 226 VVEEMVNMIVAQRAYEANSKTISTADELLRIANNLRR 262 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 11/174 (6%), Positives = 30/174 (17%), Gaps = 27/174 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + N+ N + Y + Sbjct: 1 MIRSLWSGATGMIAQQTNLDVVSNNLANVNTSGYKKVRADFQDLMYQIDREPGAPVEPAS 60 Query: 47 --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V M + + + F + Sbjct: 61 MIPTGIQVGLGTRVVGTSRIMGEGNIQTTGNPTDVAIEGDGFYQV------TLPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 R +L + +T+ + + D + + Sbjct: 115 TRDGAWRIDGNGQIVTSDGFLLEPAITIPDNMKELIISTTGQVSVLLPGDPNPQ 168 >gi|237752808|ref|ZP_04583288.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] gi|229376297|gb|EEO26388.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] Length = 263 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + F + D + S + +L Sbjct: 76 AVQKIFSQGNFKETEQNLDVAITGNGFFQIELPDGTIAYTRDGSFKRDDEGNVVNAQGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ L N +L Sbjct: 136 LVPNITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIETVNFINPAGLHALGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N S + F +++ + T V L EE++ LI +++Y ++K I D M Sbjct: 194 NTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253 Query: 472 LQTLLEGVK 480 LQ + + + Sbjct: 254 LQIVNQLKR 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/255 (8%), Positives = 48/255 (18%), Gaps = 34/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y + Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + F ++ Sbjct: 61 LSPTGIEVGLGVRPTAVQKIFSQGNFKETEQNLDVAITGNGFFQIE------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + E N +L + + N + + +I Sbjct: 115 TRDGSFKRDDEGNVVNAQGYLLVPNITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIE 174 Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + L + +N + Q + S + + + Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLI 234 Query: 215 NDMVVYTSDGTTLFE 229 Y ++ ++ Sbjct: 235 VGQRAYEANSKSIQT 249 >gi|171059410|ref|YP_001791759.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] gi|170776855|gb|ACB34994.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + F + D + + + Q ++ + Sbjct: 76 ATSRQFTQGNLQQSGNTLDVAIKGNGFFPIQMPDGTTGYTRDGAFQVSATGQLVTSAGYA 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G V + + + VA L N Sbjct: 136 VQPGITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQVANFINPAGLEAKGGNLYT-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + +S+ + T VN+ EEL +I+ +++Y +++K I +D+M Sbjct: 194 ETASSGTPNGGAPGSNGLGSLSQGFLETSNVNVVEELVTMIQTQRAYELNSKAISTSDQM 253 Query: 472 LQTL 475 LQ L Sbjct: 254 LQKL 257 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 12/222 (5%), Positives = 43/222 (19%), Gaps = 27/222 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ Q + N+ N Y + + Sbjct: 1 MMRALWISKTGMEAQQTQLDVVSNNLANVATNGYKKSHAVFEDLMYQTLRQSGAASSEQT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V ++ L + + F ++ + Sbjct: 61 QLPTGLQVGLGVRTVATSRQFTQGNLQQSGNTLDVAIKGNGFFPIQ------MPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S + + + A+ + ++ ++ Sbjct: 115 TRDGAFQVSATGQLVTSAGYAVQPGITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQ 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 + + + L +S+ Sbjct: 175 VANFINPAGLEAKGGNLYTETASSGTPNGGAPGSNGLGSLSQ 216 >gi|224418355|ref|ZP_03656361.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] Length = 727 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129 + + L +F++ E + + +Y N + + N ++ T++D Sbjct: 294 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 353 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + N+ E I + E + + Sbjct: 354 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 413 Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 + + + + + N G T +S T Sbjct: 414 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 473 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300 + + V S+ G LL+ D N+ E+ +I Sbjct: 474 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 533 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358 I+ N++ P + + + + + + Sbjct: 534 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 593 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + N + ++ ++ + + +A + L + N + Sbjct: 594 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 653 Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + + T V+ L+ LI ++ Y +S K I Sbjct: 654 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 713 Query: 468 TDKMLQTLLEGVK 480 D+++Q ++ + Sbjct: 714 ADQLMQEAIQLKR 726 >gi|170768358|ref|ZP_02902811.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] gi|170123124|gb|EDS92055.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] Length = 260 Score = 72.8 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAVPVQVGQLNLTTFMNDTGLESIGENLYS--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 48/209 (22%), Gaps = 24/209 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + A + + A + +++ L Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQA---VPVQVGQLN 174 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++I S+ + ++ Sbjct: 175 LTTFMNDTGLESIGENLYSETQSSGAPNE 203 >gi|323490149|ref|ZP_08095369.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396197|gb|EGA89023.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 255 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 6/216 (2%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 S +Q+ N V+ I GN V A G Sbjct: 46 SQNMSNSGTNPMQVGLGTTTSAINVNHNPGSVMSTGIETDLAIMGNGFFVVQDPEAPGAD 105 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 S T N + L G+ ++ ++ +++ D Sbjct: 106 GQFLTRSGSFSVTTAGNLVSAQGYNVLNSAGAPINVAGYDSFSINRSGEVVGRQADGTET 165 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 F ++ L + + + + + I V+L Sbjct: 166 TIAFVGISNPENPEGLKKVGGSM------YEVPPNTPTQTAALANTEIGSGMLEMSNVDL 219 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE + +I ++ + +++ I +D++LQ ++ + Sbjct: 220 TEEFTEMIIAQRGFQANSRTITTSDEILQEVMNLKR 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/164 (8%), Positives = 36/164 (21%), Gaps = 14/164 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENV 50 +L + N + I NI N + Y + + Sbjct: 1 MLRSMYSGVSGMKNFQTKLDVIGNNIANVNTIGYKKSTINFQDLLSQNMSNSGTNPMQVG 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 T + N N + + + F +++ + + Sbjct: 61 LGTTTSAINVNHNPGSVMSTGIETDLAIMGNGFFVVQDP--EAPGADGQFLTRSGSFSVT 118 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + + + R + + AD Sbjct: 119 TAGNLVSAQGYNVLNSAGAPINVAGYDSFSINRSGEVVGRQADG 162 >gi|117619599|ref|YP_857341.1| flagellar basal body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561006|gb|ABK37954.1| flagellar basal-body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 262 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 72/262 (27%), Gaps = 3/262 (1%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 M T + +I+ N ++ Q P G+ A Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 + ++ ++ + + + + + + D + Sbjct: 61 ERPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395 T+ + + + + + D ++ Sbjct: 121 TLNSEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFV 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N ++E S + + I + T VN+ EEL LI+ + Sbjct: 181 NASGLQPMGENM--FVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQAQ 238 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 + Y +++K++ D M+ L++ Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 13/214 (6%), Positives = 40/214 (18%), Gaps = 17/214 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + N+ NA Y + + P + Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 56 RSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + M + H+ + L + + ++ + Sbjct: 61 ERPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + E + I E +V + + Sbjct: 121 TLNSEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKG--DGASQVVGQINTTD 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + + + Q + Sbjct: 179 FVNASGLQPMGENMFVETQSSGAPVQGVAGTDGL 212 >gi|90411007|ref|ZP_01219021.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] gi|90328220|gb|EAS44531.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] Length = 262 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSSQDTELPSGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVLLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384 + + TI + Q + S ++ + ++ N+ Sbjct: 110 GNIGYTRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 G L +N +L S + I +S T VN+ Sbjct: 170 VLGQLTTVGFINPGGLEPIGQNL--FLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/235 (7%), Positives = 54/235 (22%), Gaps = 32/235 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + ++ + ++I N+ NA + + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K ++A+ + F + N Sbjct: 61 ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVL------LPDGNIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIE 157 + + + + + I E+ V N + ++ + + Sbjct: 115 TRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQVLGQL 174 Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + E N + + + LD + Q + E ++ Sbjct: 175 TTVGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNVTE 229 >gi|238796906|ref|ZP_04640410.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238719166|gb|EEQ10978.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S N Q ++ + Sbjct: 82 SQGNLTQTNNSKDLAIQGHGFFQVQMADGTTAYSRDGSFQFDQNGQLVTSSGYPVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + + + V+ + L N + E S Sbjct: 142 IPQDADTLTVGNDGIVSVTVPGQTAPQQVGQLTVSTFINDSGLESIGENL--YRETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNETTPGLNGGGTLKQGYIETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 10/157 (6%), Positives = 28/157 (17%), Gaps = 33/157 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ F ++ Sbjct: 61 TIPTGLQLGTGVRPVATERIHSQ---GNLTQTNNSKDLAIQGHGFFQVQ------MADGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + S + + + Sbjct: 112 TAYSRDGSFQFDQNGQLVTSSGYPVQPAITIPQDADT 148 >gi|145298493|ref|YP_001141334.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142851265|gb|ABO89586.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 262 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 76/262 (29%), Gaps = 3/262 (1%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 M T + +I+ N ++ Q P G+ A Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ ++ ++ + + + + + + D + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395 T+ + + + ++ + D ++ ++ Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVSTDGQVSIQLKGDGASQVVGQINLSDFV 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N +LE S + + I + T VN+ EEL LI+ + Sbjct: 181 NASGLQPMGENM--FLETQSSGAPIGGVAGADGLGVIKQGMLETSNVNVTEELVNLIQAQ 238 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 + Y +++K++ D M+ L++ Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 12/161 (7%), Positives = 35/161 (21%), Gaps = 15/161 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + N+ NA Y + + P + Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 56 R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + H + L + + ++ + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + E + I E ++ +V Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVSTDGQVSIQ 161 >gi|218689031|ref|YP_002397243.1| flagellar basal body rod protein FlgG [Escherichia coli ED1a] gi|218426595|emb|CAR07423.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli ED1a] Length = 260 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVEMSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|163782718|ref|ZP_02177714.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159881839|gb|EDP75347.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 262 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 56/191 (29%), Gaps = 2/191 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + + + F + D + + + + ++ Sbjct: 74 IADTYGIFTQGNINQTGNTLDLAIQGDGFFKVVLPDGTIAYTRNGQFRLDRDGRIVNSDG 133 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + D ++ A + + + +A L N Sbjct: 134 YPLDPEISIPPDALSIGIAADGTVTVLRQGATSVEEVGRIELAKFVNPAGLRRVGNNL-- 191 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 +++ + S + + + Y + VN+ EE+ LI +++Y + K I D Sbjct: 192 YIQTDASGEPLIDNPGNQGIGTLLQGYLESSNVNIVEEMVNLIIAQRAYEFNTKGITAAD 251 Query: 470 KMLQTLLEGVK 480 +ML + Sbjct: 252 EMLSQAANLRR 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 16/216 (7%), Positives = 47/216 (21%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + + I N+ N + + + Sbjct: 1 MFRALWTSASGMTAQQTNLDVISHNMANVNTIGFKKMRPTFQDLIYQTVREPGAPTSPTT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + ++ + + F + Sbjct: 61 RSPSGFQIGLGTYIADTYGIFTQGNINQTGNTLDLAIQGDGFFKVV------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + R + N L ++ +A + + + +++ ++ +E Sbjct: 115 TRNGQFRLDRDGRIVNSDGYPLDPEISIPPDALSIGIAADGTVTVLRQGATSVEEVGRIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++ V N+ AS D + Sbjct: 175 LAKFVNPAGLRRVGNNLYIQTDASGEPLIDNPGNQG 210 >gi|332161324|ref|YP_004297901.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605244|emb|CBY26742.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325665554|gb|ADZ42198.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860604|emb|CBX70901.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 260 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S N Q ++ F ++ Sbjct: 91 NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQNGQLVTSGGFQIQPAITIPANAMSMT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + +A N L N + E S + + Sbjct: 151 VGRDGIVSVTLPGQTATQQVGQLTLATFINNSGLESVGENL--YQETASSGAPNETTPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 31/150 (20%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQTDQNGQLVTSGGFQIQPAITIPANAM 147 >gi|307823531|ref|ZP_07653760.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] gi|307735516|gb|EFO06364.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] Length = 597 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 2/149 (1%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 Q + S ++ + Y + +K Sbjct: 451 DPMAFDIDFAKTAQTTATFSVNNSSQDGLPAGNLTGIDVDDAGVVFARYSNGGSKTLGQV 510 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A +N +L + W + + S + F I S + V+L +L Sbjct: 511 ALARFQSNQSLAKLGD--TAWAKTSSSGAPIYGAAGDNNFGTIQSSALESSTVDLSAQLV 568 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI +Q+Y +++ I +++T+L Sbjct: 569 KLIIAQQAYQANSQTITTEKTLVETILRA 597 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 63/273 (23%), Gaps = 29/273 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55 F A + AS NI N+ + + Sbjct: 2 SFATALSGLQAASTNLQVTGNNIANSQTVGFKESRAEFADVYASSIGGVSKTQPGSGVKV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP---------THYISK 106 + D + S+++ F L + ++ D N + Sbjct: 62 TEVAQQFKDGTIDPTSNSLDLALSGNGFFVLADTVNLPDPANPTAPVDPSVPTSYTRNGA 121 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-- 164 + N L A S + + D + + N+ Sbjct: 122 FKLDSSGNVVNSQGKYLLAFA---ANGTTVAEGFSVGVFRPLTIDTSQGLPNSTENINLA 178 Query: 165 -----RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + T V D + + + D + + + + + + Sbjct: 179 LTINGGATAPTTTVFDPTNALSYNNTTSITTYDSQGNAHIASTYYVKTPVANVWDAYLFL 238 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 TT + VP S TV + PI Sbjct: 239 DDYGITTGGQAVPPAAAAASTVSATVNTPGLPI 271 >gi|217076897|ref|YP_002334613.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] gi|217036750|gb|ACJ75272.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] Length = 261 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 3/193 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +L R+ E+ + + F ++D + I N + ++ Sbjct: 72 TKLSATTRIFTQGNLERTGNSLDLAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITS 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 L V + ++ ++ + D +N + L N Sbjct: 132 NGNLLSPNIVVPQNAVSLS-ISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIGDNL 190 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 +LE S + Q F I + Y V++ +E+ +I ++Y ++++ I Sbjct: 191 --FLETPASGTPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAYELNSRTIQT 248 Query: 468 TDKMLQTLLEGVK 480 D+ML+T + Sbjct: 249 ADEMLRTASSMKR 261 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 15/224 (6%), Positives = 51/224 (22%), Gaps = 27/224 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A + ++ NI N D Y + + Sbjct: 1 MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKSEFQDLLYDYSKNAGAATAQNS 60 Query: 45 ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + L +++ F ++ Sbjct: 61 LHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDLAISGDGFFQIQ------LQDGRIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + ++L ++ V + + +++ + + Sbjct: 115 TRDGQFKIDGNGRIITSNGNLLSPNIVVPQNAVSLSISPDGIVTAELQDGTLQNLGTITL 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 S L + D + +T + + +D + + Sbjct: 175 VRFINPSGLKAIGDNLFLETPASGTPVEGTAGQDGFGSILQGYV 218 >gi|54308099|ref|YP_129119.1| flagellar basal body rod protein FlgG [Photobacterium profundum SS9] gi|46912525|emb|CAG19317.1| putative polar flagellar FlgG [Photobacterium profundum SS9] Length = 262 Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ + + F + D Sbjct: 50 NQPGGQSSQDTELPSGLMLGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQILLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384 + + TI + Q + S ++ + ++ N+ Sbjct: 110 GNIGYTRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 G L +N +L S + I +S T VN+ Sbjct: 170 VLGQLTTVGFINPGGLEPIGQNL--FLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 54/235 (22%), Gaps = 32/235 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + ++ + ++I N+ NA + + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K ++++ + F + N Sbjct: 61 ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQIL------LPDGNIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIE 157 + + + + + I E+ V N + ++ + + Sbjct: 115 TRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQVLGQL 174 Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + E N + + + LD + Q + E ++ Sbjct: 175 TTVGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNVTE 229 >gi|311992329|gb|ADQ26738.1| flagellar distal rod protein [Aeromonas hydrophila] Length = 261 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 71/258 (27%), Gaps = 3/258 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ A + Sbjct: 4 LWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERPS 63 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ ++ + + + + + + D + T+ Sbjct: 64 GLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNS 123 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVT 399 + + + + + D ++ Sbjct: 124 EGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNASG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N ++E S + + I + T VN+ EEL LI+ ++ Y Sbjct: 184 LQPMGENM--FVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQAQRVYE 241 Query: 460 ISNKLIMFTDKMLQTLLE 477 +++K++ D M+ L++ Sbjct: 242 MNSKVLSAVDGMMSFLIQ 259 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/226 (7%), Positives = 50/226 (22%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSE 58 ++ + + N+ NA Y + + P + Sbjct: 3 ALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERP 62 Query: 59 NKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + M + H+ + L + + ++ + + Sbjct: 63 SGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLN 122 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I E + + +++ A + Sbjct: 123 SEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNAS 182 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + N + + + D V+ Q + E ++ Sbjct: 183 GLQPMGENMFVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTE 228 >gi|229017042|ref|ZP_04173962.1| Flagellar hook protein flgE [Bacillus cereus AH1273] gi|229023223|ref|ZP_04179734.1| Flagellar hook protein flgE [Bacillus cereus AH1272] gi|228738148|gb|EEL88633.1| Flagellar hook protein flgE [Bacillus cereus AH1272] gi|228744313|gb|EEL94395.1| Flagellar hook protein flgE [Bacillus cereus AH1273] Length = 407 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 3/183 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSV 357 F+E GN + + + + + + Sbjct: 227 TEFTEVQGAGGNVTFDAVGNPDPVNPEANIPFNGGTVKIDFSKLTNHPTEKTIAVTNVDG 286 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ Y D K V + L++ + N + Sbjct: 287 RPAATVKDCFITDGGYVMVKYSDGSMKAAGQLAVGMLPNEGGLMKTGNG--NFTATNTTG 344 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 L + Q + V+L E L+ ++ + + K+I +D++L ++ Sbjct: 345 ILALGVSGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLTEVVN 404 Query: 478 GVK 480 ++ Sbjct: 405 LIR 407 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 22/268 (8%), Positives = 67/268 (25%), Gaps = 10/268 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N + NI NA Y ++ M N ++ + Sbjct: 1 MIKALYTSITGLNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGA--KGDDRY 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEA--------LKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + + + + + + + + + Sbjct: 59 AGTNPKSIGNGVKMSGTVTDYSDGTITLTGGKVQAAMEGNGFFVVGDSKAGNMEFTRKGT 118 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S+ + T + +T ++ I + I +R + Sbjct: 119 FAISSDYYITNTGGQYVFAYPADPSTGNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNI 178 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 A + A+D + + ++ + T + + Sbjct: 179 PADAKHITQELPAYDDAGNTWTMRVEFTQDGEHNYKYTVKMRNDSKKETEFTEVQGAGGN 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSN 262 + F+ + + + I +G V + Sbjct: 239 VTFDAVGNPDPVNPEANIPFNGGTVKID 266 >gi|260752886|ref|YP_003225779.1| hypothetical protein Za10_0647 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552249|gb|ACV75195.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 417 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 44/473 (9%), Positives = 114/473 (24%), Gaps = 59/473 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + N A + NI N+ + + + T + + ++ + + Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPYASAKNIGQGTRLR 61 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ + ++ + + + + IS RD KN + Sbjct: 62 ATIQDFTSGSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVTSDG 121 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + N+ Sbjct: 122 HYL---------------------------------QVYATTNSGDIYNNGQTGSATGGR 148 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + IS G + V NN G T+ E + + + Sbjct: 149 TVKNLTLPSYEDQVSISATDGNTVQVGNNLAATGTVKIGGTVIENAKITLGGATVQADKT 208 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T++ + I G +++ G+ + + + Sbjct: 209 TAKGGVLTITGGTITAADGT------------------------ISANTATYTSTGATAT 244 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + G + G T + S + Sbjct: 245 VTTSAGTSSLTAITELGTLSYNGDTYSGSISTADGTVVTAGTVTASDTDTSGDTSSALSN 304 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ + + + + +N L W S S + Sbjct: 305 ISVGTDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNA--NWTVTGTSGSLNYREAD 362 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++L +EL LI ++++ ++K I ++M+ ++ Sbjct: 363 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 415 >gi|1272368|gb|AAA97476.1| LfgE [Vibrio parahaemolyticus] Length = 362 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 71/281 (25%), Gaps = 3/281 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + DH + ++ + L Sbjct: 59 NFDKNGSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D+ ++ + + + ++N + + Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSF 178 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 ++ D L + + N ++ V G T T+P N + + Sbjct: 179 NSSYTTQVYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPT 238 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 S + G S + + A + + + Sbjct: 239 GSFNVAFPAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGY 279 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 24/359 (6%), Positives = 75/359 (20%), Gaps = 2/359 (0%) Query: 85 ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 AL + + + N + + + + G + Sbjct: 6 ALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVASISQNFDKNGS 65 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + D I + + T+ + F T + + S Sbjct: 66 ITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQGYSVDSNN 125 Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 ++ V N + T + + + +P S Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSFNSSYTTQ 185 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 G + Q ++ + + + Sbjct: 186 VYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPTGSFNVAF 245 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + Q+ + + + + + Y + ++ Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEDNGMVYATYTNGQSQ 305 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +A L + + W + S + + + +++ V+ Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPIMGVPGSGTLGNLTPGALEGSNVD 362 >gi|148546709|ref|YP_001266811.1| flagellar basal body rod protein FlgG [Pseudomonas putida F1] gi|148510767|gb|ABQ77627.1| flagellar basal-body rod protein FlgG [Pseudomonas putida F1] Length = 261 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + + Q + Sbjct: 77 TQKNFQTGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVNADGLAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAMGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 50/242 (20%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N L + + + F + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQILQ------PDGTVSY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + N L V ++A+ + + A ++ Sbjct: 115 TRDGTFHLNSDGQIVNADGLALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + N+ AS + + ++ Sbjct: 175 TADFINPAGLQAMGNNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMI 234 Query: 220 YT 221 T Sbjct: 235 TT 236 >gi|317492426|ref|ZP_07950855.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919765|gb|EFV41095.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 260 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F D + S + N Q ++ F + Sbjct: 94 DVAIKGQGFFQVQQPDGTLAYTRDGSFQVDQNGQLVTSSGFQVVPAITIPANATKLTIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 +N + + + L N + E S + Sbjct: 154 DGIVSVNQQGQTATTQVGQLTLTTFINDAGLESVGENL--YQETESSGAPTESTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 212 GMLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQL 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 29/149 (19%), Gaps = 21/149 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ I N+ N + R+ + T Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTDNSRDVAIKGQGFFQVQQPDGTLAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 118 GSFQVDQNGQLVTSSGFQVVPAITIPANA 146 >gi|114330363|ref|YP_746585.1| flagellar basal body rod protein FlgG [Nitrosomonas eutropha C91] gi|114307377|gb|ABI58620.1| flagellar basal-body rod protein FlgG [Nitrosomonas eutropha C91] Length = 260 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 58/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + ++ + F + D + + + Q + F Sbjct: 76 ATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQDGQLVTASGFP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ + + + L + N +L Sbjct: 136 LQPSITIPPNTLSITIGRDGTVSVLTPGSATPLPVGNIQLTSFINPAGLQRFGENL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + +++ + T VN+ EEL +I+ +++Y I+++ I +D+M Sbjct: 194 ETMSSGVPNPGIPGTNGIGLLNQGFVETSNVNVVEELVEMIQTQRAYEINSRSIQTSDQM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LSRLTQL 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 29/153 (18%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + + I N+ N + R + Sbjct: 1 MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L + + F + Sbjct: 61 RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQIL------LPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + S L ++ + Sbjct: 115 TRDGAFQSDQDGQLVTASGFPLQPSITIPPNTL 147 >gi|238782794|ref|ZP_04626823.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238716217|gb|EEQ08200.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D + S I N Q ++ + Sbjct: 87 NQTSNSKDLAIQGNGFFQIQLADGTTAFTRDGSFQIDQNGQLVTSSGYPVQPAITLPPDA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + + ++ + L N + E S + + Sbjct: 147 ETLTVGNDGIVSVTVQGQTAPQQVGQITLSTFINDSGLESIGENL--YRETQSSGAPNET 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 205 TPGLNGSGTLRQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQRLTQL 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 36/183 (19%), Gaps = 33/183 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSTEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + L+ S++ F ++ Sbjct: 61 TIPSGLQLGTGVRPVSTERLHSQ---GSLNQTSNSKDLAIQGNGFFQIQ------LADGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + S + + + ++ + Sbjct: 112 TAFTRDGSFQIDQNGQLVTSSGYPVQPAITLPPDAETLTVGNDGIVSVTVQGQTAPQQVG 171 Query: 159 EIS 161 +I+ Sbjct: 172 QIT 174 >gi|224372657|ref|YP_002607029.1| flagellar basal body rod protein FlgG [Nautilia profundicola AmH] gi|223588586|gb|ACM92322.1| flagellar basal-body rod protein FlgG [Nautilia profundicola AmH] Length = 262 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 4/185 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I S N + ++ D ++ ++ S Sbjct: 80 IFSQGNFKETGNNLDVAIQGDGFFQVQLPDGRIAYTRDGAFKLDADGNIVTSDGYKLIPN 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNK--NFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 V+ G ++ + +A L N +++ Sbjct: 140 ITLPADTVQVSIGTDGTVSVLEAGQTQMQQIGQIEIAKFINPAGLHSLGSNL--YIDTTA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + + + V L EE++ LI +++Y+ ++K I+ +D+MLQT+ Sbjct: 198 SGDPIVSTPGLDGTGELRQGFVEMSNVQLVEEMTDLITGQRAYDAASKAIVTSDEMLQTV 257 Query: 476 LEGVK 480 + Sbjct: 258 NNLKR 262 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/210 (8%), Positives = 44/210 (20%), Gaps = 35/210 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q + NI N + Y ++ Sbjct: 1 MVRSLYTAATGMMAQQMQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTSTSTTT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + F ++ Sbjct: 61 QSPTGINVGLGVRPTAVTKI---FSQGNFKETGNNLDVAIQGDGFFQVQ------LPDGR 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEI 156 + + L + A+ V + T + ++ + + Sbjct: 112 IAYTRDGAFKLDADGNIVTSDGYKLIPNITLPADTVQVSIGTDGTVSVLEAGQTQMQQIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHD 186 ++EI+ ++ ++ TAS Sbjct: 172 QIEIAKFINPAGLHSLGSNLYIDTTASGDP 201 >gi|300722680|ref|YP_003711970.1| flagellar basal-body rod cell-distal protein [Xenorhabdus nematophila ATCC 19061] gi|297629187|emb|CBJ89783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 260 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + F + D + S + N Q + F + Sbjct: 82 SQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRDGSFQVDQNGQLVTAGGFQVVPAII 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + +N + + + L N +LE N S Sbjct: 142 IPDNATKIGIARDGIISVNVQGQNAPQQVGQLTLTTFINESGLESIGENL--YLETNSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + Y T VN+ EEL +I+V+++Y I++K + +D+MLQ L + Sbjct: 200 VPVENAPGINGTGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 29/149 (19%), Gaps = 21/149 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT------------------MTT 44 ++ A+ + I N+ N + R+ T Sbjct: 1 MIRSLWIAKTGLDVQQTNMDVIANNLANVSTSGFKRQRVVSEELIYQTERQPGAMSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 NLPSGLQIGTGAR---PVATERLHSQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + +I Sbjct: 118 GSFQVDQNGQLVTAGGFQVVPAIIIPDNA 146 >gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280203|gb|ABR88613.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 260 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + F + D + S Q ++ F V Sbjct: 82 TQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAIV 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + VA L N ++E S Sbjct: 142 IPANATAISISRDGIVSVTVPGTTAQTEVGALQVATFINPAGLESKGENL--YVETTASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ ++Y T VN+ EE+ +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 NPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 53/246 (21%), Gaps = 37/246 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L S++ L F + Sbjct: 61 QLPSGLQIGTGVRPVATERIH---TQGNLQLTSNSKDMAILGDGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 + + + S + ++ A + V A + Sbjct: 112 TAYTRDGSFQTDNQGQMVTSSGFPIQPAIVIPANATAISISRDGIVSVTVPGTTAQTEVG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + + E N + TAS + + + + + + V Sbjct: 172 ALQVATFINPAGLESKGENLYV-ETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEM 230 Query: 216 DMVVYT 221 ++ T Sbjct: 231 VNMIQT 236 >gi|313141887|ref|ZP_07804080.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] gi|313130918|gb|EFR48535.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] Length = 708 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129 + + L +F++ E + + +Y N + + N ++ T++D Sbjct: 275 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 334 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + N+ E I + E + + Sbjct: 335 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 394 Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 + + + + + N G T +S T Sbjct: 395 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 454 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300 + + V S+ G LL+ D N+ E+ +I Sbjct: 455 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 514 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358 I+ N++ P + + + + + + Sbjct: 515 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 574 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + N + ++ ++ + + +A + L + N + Sbjct: 575 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 634 Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + + T V+ L+ LI ++ Y +S K I Sbjct: 635 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 694 Query: 468 TDKMLQTLLEGVK 480 D+++Q ++ + Sbjct: 695 ADQLMQEAIQLKR 707 >gi|146278639|ref|YP_001168798.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] gi|145556880|gb|ABP71493.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ + G ++ ++ + ++G L N ++E Sbjct: 139 GITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITLSGFANEKGLEAIGSNL--FVETA 196 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + + Y V+ +E++ LIK ++ Y ++ K+I D+ML Sbjct: 197 ASGAPIAGTPGEDGFGTLRQGYLEESSVDSVQEITELIKAQRGYELNAKVITAADQML 254 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/226 (7%), Positives = 42/226 (18%), Gaps = 23/226 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALQIAATGMSAQQTRVDVISNNLANMSTTGYNPRRADFADLHYQQMVRPGTVSAEDGRML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102 P V + + + L + + + + + + S Sbjct: 63 PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYIEVTLPSGQSAYTRDGSLKR 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L + + + I + + + +VQ Sbjct: 123 SGEGLVVTSDGHEVAPGITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITLSGFANEK 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + V A + D + S + + Sbjct: 183 GLEAIGSNLFVETAASGAPIAGTPGEDGFGTLRQGYLEESSVDSVQ 228 >gi|22126388|ref|NP_669811.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM 10] gi|45441407|ref|NP_992946.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108807175|ref|YP_651091.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|108812481|ref|YP_648248.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|145598608|ref|YP_001162684.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149366249|ref|ZP_01888284.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162420398|ref|YP_001606475.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165925935|ref|ZP_02221767.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165938754|ref|ZP_02227309.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|166010911|ref|ZP_02231809.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166210683|ref|ZP_02236718.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|167401156|ref|ZP_02306659.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419985|ref|ZP_02311738.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425757|ref|ZP_02317510.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467493|ref|ZP_02332197.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1] gi|218928924|ref|YP_002346799.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|229896244|ref|ZP_04511414.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|229897179|ref|ZP_04512335.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897905|ref|ZP_04513056.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229902863|ref|ZP_04517980.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|270486643|ref|ZP_06203717.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294504028|ref|YP_003568090.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|21959374|gb|AAM86062.1|AE013853_10 cell-distal portion of basal-body rod [Yersinia pestis KIM 10] gi|45436267|gb|AAS61823.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108776129|gb|ABG18648.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|108779088|gb|ABG13146.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|115347535|emb|CAL20444.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|145210304|gb|ABP39711.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149292662|gb|EDM42736.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162353213|gb|ABX87161.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165913368|gb|EDR31990.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|165922139|gb|EDR39316.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165990255|gb|EDR42556.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166207863|gb|EDR52343.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|166961680|gb|EDR57701.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049545|gb|EDR60953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055156|gb|EDR64953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680310|gb|EEO76409.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|229688946|gb|EEO81011.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229693516|gb|EEO83565.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701167|gb|EEO89196.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|262361786|gb|ACY58507.1| flagellar basal-body rod protein FlgG [Yersinia pestis D106004] gi|262366078|gb|ACY62635.1| flagellar basal-body rod protein FlgG [Yersinia pestis D182038] gi|270335147|gb|EFA45924.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294354487|gb|ADE64828.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|320015465|gb|ADV99036.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 72.4 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S + N Q + F Sbjct: 54 SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 113 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + N L N + E S Sbjct: 114 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSG 171 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 172 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 231 Query: 478 G 478 Sbjct: 232 L 232 >gi|75675292|ref|YP_317713.1| flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] gi|74420162|gb|ABA04361.1| Flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] Length = 613 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 41/448 (9%), Positives = 100/448 (22%), Gaps = 14/448 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 M + N + S +I NI NA Y T + +P Sbjct: 1 MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKE----MMSADDHYNNSPTHYISKLR 108 + + A + F ++ M + + + Sbjct: 61 VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQ 120 Query: 109 DSLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + N + L +D + + + A A ++ + Sbjct: 121 VDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNNFVPAQATTTVQYAANLPSVP 180 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + + A A + DF + L+ I + T G Sbjct: 181 RTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI 240 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 T+ + + ++ G+A+P G A D V Sbjct: 241 TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDL 300 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 ++ + + I ++ L + + Sbjct: 301 LGRIGAITGAAPTIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPG 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + ++ ++ + + Y G + T + + Sbjct: 361 AGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFYQA 420 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + + + + +S Sbjct: 421 DPNATGTQAAWINVGTNFTFGINGQLSS 448 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 44/372 (11%), Positives = 97/372 (26%), Gaps = 11/372 (2%) Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 DSL + T I + D ++ I + Sbjct: 253 DSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDLLGRIGAITGAAP 312 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + AI T + D +I I+ V ++ T+F Sbjct: 313 TIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPGAGVVIANDQTIF 372 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T T+ + + +S + D Q Sbjct: 373 QQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNL---FYQADPNATGTQA 429 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + S + ++ G + L N S + N Sbjct: 430 AWINVGTNFTFGINGQLSSPVGSS-ITIPGVSVGSQSLGNLTLNIGSGGLTQYASSGGNA 488 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + ++ + + N + ++ N L Sbjct: 489 TINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLK------- 541 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + +++ IS S ++ +E + LI +Q+Y+ + K+I Sbjct: 542 ALDGGAYAVTNESGSAIAGASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITTA 601 Query: 469 DKMLQTLLEGVK 480 + M+Q LL ++ Sbjct: 602 NSMVQDLLNVLR 613 >gi|205353083|ref|YP_002226884.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272864|emb|CAR37793.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628163|gb|EGE34506.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I+ K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINCKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 >gi|94312671|ref|YP_585880.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] gi|93356523|gb|ABF10611.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] Length = 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ A + + F + D + S + N Q ++ F+ + Sbjct: 82 TQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSFQVDQNGQLVTSSGFVINPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +V + + +A L N +++ + S Sbjct: 142 LPANYTSVNIARDGTVTVMQPGSTNAATVGQLQLATFPNPTGLESMGENL--YVQTDASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + +Y VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNTTVPGLNGAGTLQNNYVEASNVNVVEELVSMIQTQRAYEINSKAVQTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/169 (7%), Positives = 31/169 (18%), Gaps = 21/169 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQT 60 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + +H + + Sbjct: 61 VLPSGMQIGTGVR---PVATERIHTQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 + S ++ + A N + Sbjct: 118 GSFQVDQNGQLVTSSGFVINPAITLPANYTSVNIARDGTVTVMQPGSTN 166 >gi|85712256|ref|ZP_01043307.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693883|gb|EAQ31830.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 262 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 70/208 (33%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ +++ + ++ ++ + + + + F + D Sbjct: 50 NQPGGQSAQDVELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMINGKGFFQVLMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNK 384 + ++ ++ + + +++ ++ + ++ N Sbjct: 110 GTLSYTRNGQFSVNEEGTLVTSGNGYPIEPQIQIPEDAISLSISQEGEVTVRQPGNAQNA 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L +N + E S + + ++ + T VN+ Sbjct: 170 VIGQLNLASFINPAGLEPIGQNL--YKETAVSGAPQESVPGVDGVGNVRQGMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIEAQRGYEMNSKVISSVDQML 255 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 35/159 (22%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + + I N+ NA + + + P + Sbjct: 1 MNPALWISKTGLDAQQRDISVISNNLANASTVGFKKSRAIFEDLLYQNINQPGGQSAQDV 60 Query: 56 R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + H + L K + Sbjct: 61 ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMINGKGFFQVLMPDGTLSYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + E + I E+ + + EV Sbjct: 121 SVNEEGTLVTSGNGYPIEPQIQIPEDAISLSISQEGEVT 159 >gi|291519588|emb|CBK74809.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 582 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/332 (10%), Positives = 76/332 (22%), Gaps = 5/332 (1%) Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 D ++ ++ T + D + + +T Sbjct: 252 DNTLDKIFGAAGTTTKTYNFSSNVTYDSTVANGTGTGGWVYTDTATNEKYLLSKATTTAG 311 Query: 213 NNNDMVVYTSDGTTLFETVP----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + T E + + N I G+ +SS + Sbjct: 312 ELMLTKLSDGTVLTYDEATNQIGDVSLTKLFGVATDDLKNLNTIDWSGLNLSSGTVKSEL 371 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + F+ + I+ Sbjct: 372 QITFDTVNYGLQFDTKEGTLITAGNDGGTTLMFNASLLGPNRNPTTEQNAAMSNIEVELG 431 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 L + R P G K ++ + Y + Sbjct: 432 ALLNYDNSGTSTVVANRGIPDGSSMRGEGKKLGTMTGLSVQSDGKIFGSYSNGNTVLLGQ 491 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 VA L E N + S + ++ V+L E Sbjct: 492 IAVAQFANASGLEEKGDNCYDTTLNSGEFDGIGIDISADG-SAMNTGQLEMANVDLSSEF 550 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I ++ + ++++I +D ML+ L+ + Sbjct: 551 TDMITTQRGFQANSRIITVSDTMLEELINLKR 582 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 44/447 (9%), Positives = 103/447 (23%), Gaps = 19/447 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58 ++ + I NI N + + T + + + + T Sbjct: 1 MMRSLFSGVAGLKTHQTKMDVIGNNISNVNTVAFKSSATTFSDIMYQTTQQASGATATRG 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALK-------------EMMSADDHYNNSPTHYIS 105 N L + A + + + Sbjct: 61 GTNAKQIGLGVTNGATKVSITSAGAAQSTGDALDIRLTDANSTNFFIVSNGSQNLFTRAG 120 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR- 164 + L +A++ + ++ +RA+ + Sbjct: 121 SFYIDGNGNLAMTTTGYLVMGWQVDADDPSNIIKDTVSPLRVMRAENLTSAPEATTAANF 180 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + + +D L I ++ G + V + Sbjct: 181 AGVIDKNDSQFESTGGYVRSFTFYDNLGYAYNAKFSIKKVDGTTGKYSIELTNVFDQDNV 240 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L E + + + + + V+ + A G + + Sbjct: 241 DKLAEYLAASPDNTLDKIFGAAGTTTKTYNFSSNVTYDSTVANGTGTGGWVYTDTATNEK 300 Query: 285 IFQNQLDEMARVLI-GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++ A L+ S+ + + ++ TI + Sbjct: 301 YLLSKATTTAGELMLTKLSDGTVLTYDEATNQIGDVSLTKLFGVATDDLKNLNTIDWSGL 360 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 S+ + + + ++ LI D + G N N T + Sbjct: 361 NLSSGTVKSELQITFDTVNYGLQFDTKEGTLITAGNDGGTTLMFNASLLGPNRNPTTEQN 420 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFN 430 A S +E ++D S VV N Sbjct: 421 AAMSNIEVELGALLNYDNSGTSTVVAN 447 >gi|238919261|ref|YP_002932776.1| flagellar basal body rod protein FlgG [Edwardsiella ictaluri 93-146] gi|238868830|gb|ACR68541.1| flagellar basal-body rod protein FlgG, putative [Edwardsiella ictaluri 93-146] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQITPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + + L N + E S Sbjct: 142 IPANATSMTIGRDGIVSVTLQGQAAPQQVGQLTLNTFINDAGLESMGENL--YQETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 SPTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + R+ + Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F + + Sbjct: 61 NLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + S + + A ++ A + Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQITPAITIPANATSMTIGRDGIVSVTLQGQAAPQ 168 >gi|330880535|gb|EGH14684.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. glycinea str. race 4] Length = 61 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 S V + + GV+L EE + LIK +Q Y S+++I + TL+ + Sbjct: 6 ASAAVVAQAKSARDSVSGVSLDEEAANLIKYQQYYTASSQIIKAAQTIFSTLINSL 61 >gi|74101660|gb|AAZ99750.1| FlgGL [Aeromonas hydrophila] Length = 275 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + ++ + N + L Sbjct: 144 NSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFTNPAGLEALGG 203 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + I + + VN+ EE+ +I +++Y ++ K++ Sbjct: 204 NL--YRATGASGEAIEGVPGEEAMGAIKQFTLESSNVNVVEEMVDMITTQRAYEMNAKVV 261 Query: 466 MFTDKML 472 D+ML Sbjct: 262 SAADQML 268 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 36/199 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ASI N+ N + + R Sbjct: 15 MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 74 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + + + F + Sbjct: 75 LSPIGIQMGNGVRVVGTQKV---FTPGQFQNTNQELDMAVVGAGF------FGVERPDGE 125 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155 + + + E N + + + T + + + + + Sbjct: 126 TAYTRNGQWHRNAEGLLVNSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELG 185 Query: 156 IELEISNLRRFLSELTVVN 174 + E N Sbjct: 186 RITLTNFTNPAGLEALGGN 204 >gi|126176154|ref|YP_001052303.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304412506|ref|ZP_07394112.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307307165|ref|ZP_07586903.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125999359|gb|ABN63434.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304349148|gb|EFM13560.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306910404|gb|EFN40835.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 57/206 (27%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ AL + + ++ ++ + + F + Sbjct: 51 QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEEPNG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ V + V ++ ++ Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIANDGVVTAKMAGEAEPQDL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + + VN+ E Sbjct: 171 GQITLVNFTNPAGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 60.4 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 41/185 (22%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K + S + F ++E + Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEE------PNGDLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S E L ++ + + K+ +A+ + +I+ Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIANDGVVTAKMAGEAEPQDLGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 >gi|296282279|ref|ZP_06860277.1| hypothetical protein CbatJ_01595 [Citromicrobium bathyomarinum JL354] Length = 269 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 75/260 (28%), Gaps = 4/260 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 + + T+ +I + + + G +S+ + ++A+ Q Sbjct: 10 LKNAQSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSVEAITQNFS 69 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-- 338 +MA G F+ + G G F + + + + Sbjct: 70 LGPIEQTGSALDMAITGDGFFTMRGENGGTLYTRAGSFTINESGGIVDNDGNRLQAYAVD 129 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + ++ + + + + + Y D N+ +A Sbjct: 130 ANGDPTSNALQDVQIPVTNAAGAEYAGVTVGSDGVIRASYADGSNQPVGMVALATFMAPN 189 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + W S + + + V++ EEL LI ++++ Sbjct: 190 GLKPVGSS--NWESTGFSGAASYGEPGNGQYGALLSGSLERSNVDIAEELVGLITAQRNF 247 Query: 459 NISNKLIMFTDKMLQTLLEG 478 + K I ++ QT++ Sbjct: 248 QANAKAIDTATQISQTVMNL 267 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 16/145 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55 F + N NA +I NI N++ + R T + Sbjct: 2 SFYTSLNGLKNAQSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + +N + SA+ F + + + Sbjct: 62 EAITQNFSLGPIEQTGSALDMAITGDGFFTM------RGENGGTLYTRAGSFTINESGGI 115 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNT 140 + + L +D + N Sbjct: 116 VDNDGNRLQAYAVDANGDPTSNALQ 140 >gi|293414371|ref|ZP_06657020.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] gi|291434429|gb|EFF07402.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 34/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++++ A+ + I N+ N + R+ + T Sbjct: 1 MISLLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|85058013|ref|YP_453715.1| flagellar basal body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] gi|84778533|dbj|BAE73310.1| flagellar basal-body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + F+ + D N + S Q ++ + + Sbjct: 87 TNTGNPTDVAIEGSGFLQVLMPDGTNAYTRDGSLQRDQYGQLVTSSGYPIQPAVMIPNGA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ + + + +A + L N + E S + + Sbjct: 147 SNLTISKDGLVSVALPGQTEPQEVGQLNLATFINDAGLQSLGENL--YYETPSSGAPMEN 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + VN+ +EL +I+ +++Y +++K I +D+MLQ L + Sbjct: 205 KPGMNGAGALKQQFLENSNVNVAQELITMIQAQRAYELNSKAISTSDQMLQRLAQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 26/155 (16%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I NI N + R+ + Sbjct: 1 MMRSLMIAKTGLEAQQTNMDVISNNIANVSTMGFKRQQAVFEDLLYQTVRQPGAKSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L + F + Sbjct: 61 TIPSGLQLGTGVRPVATTRIH---LQGGLTNTGNPTDVAIEGSGFLQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + L+ S + V+ Sbjct: 112 NAYTRDGSLQRDQYGQLVTSSGYPIQPAVMIPNGA 146 >gi|313497764|gb|ADR59130.1| FlgG [Pseudomonas putida BIRD-1] Length = 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + + F D + + + + Q + + Sbjct: 77 TQKSFVAGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100 P + V T + L + + + F + + + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Y+ + + + T+A + + Sbjct: 121 HLNSDGQIVTANGYALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + A + + S + + +V Y Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240 Query: 221 TSDGTTLFE 229 + + Sbjct: 241 EMNSKVIST 249 >gi|152997580|ref|YP_001342415.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] gi|150838504|gb|ABR72480.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] Length = 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 2/181 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + F+ D + S + Q ++ + Sbjct: 76 ATQKDFSNGDYNMTDRQLDIAIQGKGFLQVLQPDGTIAYTRNGSLQLNSQGQLATSGGLV 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + G + + + D+ + +AG L +N Sbjct: 136 LEPGIQIDPDVIEIMIAEDGIVSVRKNGDADAQQVGAINIAGFINPTGLSSAGQNLFT-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E N S + + I++ VN EEL +I +++Y +++K+I D M Sbjct: 194 ETNASGPPLVGVPGTDSLGTIAQGMLEASNVNSIEELVNMITTQRAYEMNSKVIASADGM 253 Query: 472 L 472 + Sbjct: 254 M 254 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/146 (6%), Positives = 32/146 (21%), Gaps = 33/146 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +Q + N+ N + + + Sbjct: 1 MNSALWVSKTGLSAMDKQLNVVANNLANVSTTAFKKDRAVFEDLMYKTVRAPGGLSAQNA 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + K+ + + + + F + + Sbjct: 61 ELPSGLQLGTGVKVGATQ---KDFSNGDYNMTDRQLDIAIQGKGFLQVLQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILG 124 L+ + + +L Sbjct: 112 IAYTRNGSLQLNSQGQLATSGGLVLE 137 >gi|91794993|ref|YP_564644.1| flagellar basal-body rod FlgG [Shewanella denitrificans OS217] gi|91716995|gb|ABE56921.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 261 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ L Q+ + ++ +V + F + Sbjct: 51 QPGGQVDELNQLPSGLQLGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEEPNG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ V + N+ + D+ + Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDSTNITIATDGIVMATIAGDAEPQEL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + + VN+ E Sbjct: 171 GQITLINFTNPAGLEARGNNL--YRETAASGVAVEGVAGDQALGGLRQGSLEGSNVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/242 (9%), Positives = 57/242 (23%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLAAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDELN 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K +H S + F ++E + Sbjct: 61 QLPSGLQLGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEE------PNGDLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S E L ++ + T + I DA+ + +I+ Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDSTNITIATDGIVMATIAGDAEPQELGQIT 174 Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + N+ + AS + + + + G + V ++ Sbjct: 175 LINFTNPAGLEARGNNLYRETAASGVAVEGVAGDQALGGLRQGSLEGSNVNVVEEMVEMI 234 Query: 220 YT 221 T Sbjct: 235 ST 236 >gi|254712013|ref|ZP_05173824.1| flagellar basal body rod protein FlgG [Brucella ceti M644/93/1] gi|254715082|ref|ZP_05176893.1| flagellar basal body rod protein FlgG [Brucella ceti M13/05/1] gi|261216792|ref|ZP_05931073.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261319659|ref|ZP_05958856.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] gi|260921881|gb|EEX88449.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261292349|gb|EEX95845.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] Length = 241 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + + + K++ ++ ++ Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 >gi|313682110|ref|YP_004059848.1| flagellar basal-body rod protein flgg [Sulfuricurvum kujiense DSM 16994] gi|313154970|gb|ADR33648.1| flagellar basal-body rod protein FlgG [Sulfuricurvum kujiense DSM 16994] Length = 262 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ ++ + + F + + + S I N ++ + Sbjct: 76 SINKIFTEGSLKQTDNSLDLAITGKGFFKLELPNGTEVYSRNGSFKIDENGTIVNSDGYK 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V + N+ + + + L N ++ Sbjct: 136 LVPEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQISLTSFINPAGLHAMGDNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + S + +I + + V L EL+ LI +++Y+ ++K+I +D+M Sbjct: 194 ETDSSGQPIEGTPGENGIGNIRQGFVELSNVQLVVELTDLITGQRAYDANSKVITTSDEM 253 Query: 472 LQTLLEGVK 480 L T + Sbjct: 254 LATTNGLKR 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 29/210 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + Q + NI N + Y + Sbjct: 1 MMQSLYTSSTGMLSMQTQIDTTANNIANVNTMGYKKSRAEFADLMYKVMTYAGTSTSDTT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK + L +++ + F L+ Sbjct: 61 KSPTGIEVGLGVRPTSINKIFTEGSLKQTDNSLDLAITGKGFFKLE------LPNGTEVY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N L V+ ++A + + Q +A A + ++ Sbjct: 115 SRNGSFKIDENGTIVNSDGYKLVPEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQIS 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 +++ + ++ +S Sbjct: 175 LTSFINPAGLHAMGDNLFVETDSSGQPIEG 204 >gi|329297209|ref|ZP_08254545.1| Flagellar basal-body rod protein flgG [Plautia stali symbiont] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + N + + D + + S + N Q +N F G Sbjct: 87 SQTSNSKNVAINGQGYFQVQMPDGTSAYTRDGSFQVDQNGQLVTNAGFPVQPGITIPANA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + + ++ + L N + E S + Sbjct: 147 TSITIARDGVVTVTQQGQTQPAQVGQLTLSTFMNDAGLDSVGENL--YQETQASGAPTES 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Q + +SY T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 205 TPGQNGAGLLYQSYVETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLQKLTQL 260 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 23/239 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S Sbjct: 61 TLPSGLQIGTGVR---PVTTERLHNQGNLSQTSNSKNVAINGQGYFQVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + T+ NA + + Q+ + + +L +S Sbjct: 118 GSFQVDQNGQLVTNAGFPVQPGITIPANATSITIARDGVVTVTQQGQTQPAQVGQLTLST 177 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 +V + + AS Q L S + + V ++ T Sbjct: 178 FMNDAGLDSVGENLYQETQASGAPTESTPGQNGAGLLYQSYVETSNVNVAEELVTMIQT 236 >gi|317133480|ref|YP_004092794.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471459|gb|ADU28063.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 326 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/275 (8%), Positives = 63/275 (22%) Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 G V S + T N + + D ++ + Sbjct: 51 GTDNTNATQVGYGVKVSGVSKDMSTTGETTTNVPTNLFINGEGYFIVSTDSASHTAGSTT 110 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + L + + A ++ + Sbjct: 111 NSSGATVADYYTRVGNFQKNASGYLVDANGNYVMGMDATSLAAYQADPTSLPTLHAISLI 170 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + +N + + + + G + + Sbjct: 171 GATFHPTAAGTSTSSDVTVTANTNISDLTINSDGTISGTIGSSTGTFEYGTSNGATTASA 230 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 VA + + + S S S + V+L Sbjct: 231 SDPIIVALATFPNDGGLSQAGNTSFTQSVSSGSPTYIQASNGNSTTLISGALEQSNVDLA 290 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E + +I ++ + ++++I D +L+ ++ + Sbjct: 291 REFTNMIVTQRGFQANSRVITVADSLLEEIVNLKR 325 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 70/302 (23%), Gaps = 17/302 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 N A I NI N + + T + Sbjct: 3 ALNSAVTGLQAQQTAMDVIGNNIANVNTDGFKASRTDFSDL--------------FYQTL 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 ++ Q + + MS + + + S + + G Sbjct: 49 QGGTDNTNATQVGYGVKVSGVSKDMSTTGETTTNVPTNLFINGEGYFIVSTDSASHTAGS 108 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 T + V + + + ++ + + + A + H Sbjct: 109 TTNSSGATVADYYTRVGN---FQKNASGYLVDANGNYVMGMDATSLAAYQADPTSLPTLH 165 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 S ++ N + SDGT FE S Sbjct: 166 AISLIGATFHPTAAGTSTSSDVTVTANTNISDLTINSDGTISGTIGSSTGTFEYGTSNGA 225 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 T+ S I + + + + + Q S P + + + LI E+ Sbjct: 226 TTASASDPIIVALATFPNDGGLSQAGNTSFTQSVSSGSPTYIQASNGNSTTLISGALEQS 285 Query: 306 PI 307 + Sbjct: 286 NV 287 >gi|295111397|emb|CBL28147.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Synergistetes bacterium SGP1] Length = 268 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 2/200 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 I IAG + F +D + + I Sbjct: 71 GTRVTATPSFMTQGHFQITDNKMDWAIAGQTMAGENAFFQVTQQDGTIAYTRAGAWEIDG 130 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q S L + V + +V+ ++ + + +A L Sbjct: 131 DGQIVSEDGLLLEPAMVVPENATSVQLTRTGRVMVTIPGQTEPQEIGQLELARFINPAGL 190 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 +LE + S + + Q + + V + EE+ +I +++Y Sbjct: 191 RALGDRL--FLETSASGAPIVGQPGQNGMPTVRQGVLEMSNVQVVEEMVGMIIAQRAYEA 248 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 ++K I D++L+ + Sbjct: 249 NSKGIQTADELLRIANGLKR 268 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 13/174 (7%), Positives = 34/174 (19%), Gaps = 21/174 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L + + + N+ N + + Y +R + Sbjct: 1 MLRALWSSASGMIAQQTNLDVVSHNLANVNTQGYKKRRADFEDLLYQVWREPGTPVEPNS 60 Query: 45 ISPENVTVVTQRSEN---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V M + + Q+ Sbjct: 61 TVPTGVQVGLGTRVTATPSFMTQGHFQITDNKMDWAIAGQTMAGENAFFQVTQQDGTIAY 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + +L ++ + R + I + + Sbjct: 121 TRAGAWEIDGDGQIVSEDGLLLEPAMVVPENATSVQLTRTGRVMVTIPGQTEPQ 174 >gi|84514825|ref|ZP_01002188.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] gi|84510984|gb|EAQ07438.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] Length = 273 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/270 (10%), Positives = 77/270 (28%), Gaps = 2/270 (0%) Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 I + + + + S+ T + + ++ + V S Sbjct: 4 TIKSGMATSMFEIAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIVDG 63 Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + LL + + ++ + I+ + L ++ Sbjct: 64 TKQSTEQGGLLTRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQLRT 123 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 N G + + + L+ Y + + Sbjct: 124 STNDFVMGYGPGVTPAEATPLVNLKVPVKKDGDGGAQLTALEIGTDGKLMATYGSAPAEL 183 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 +A + L + +L + + + + + Q F I T V+L Sbjct: 184 LGTIAIASFPNEIALRQI--GMNRFLATDGAGTPKIGVGGQDGFGMIQSGTLETSNVDLT 241 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 EL+ +I+ +Q ++ S++++ M++ L Sbjct: 242 IELTDMIRAQQQFSGSSRILQTYSDMIEKL 271 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/208 (6%), Positives = 52/208 (25%), Gaps = 11/208 (5%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------- 59 F ++ + + A + N+ N+ + + +T + + + + Sbjct: 2 FGTIKSGMATSMFEIAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIV 61 Query: 60 ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ L + + + + + + Sbjct: 62 DGTKQSTEQGGLLTRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQL 121 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + D + V+K + LEI + ++ Sbjct: 122 RTSTNDFVMGYGPGVTPAEATPLVNLKVPVKKDGDGGAQLTALEIGTDGKLMATYGSAPA 181 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISE 203 + A ++ ++ + + ++ Sbjct: 182 ELLGTIAIASFPNEIALRQIGMNRFLAT 209 >gi|307823533|ref|ZP_07653762.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum SV96] gi|307735518|gb|EFO06366.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum SV96] Length = 262 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 2/175 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + A + F+ + + D + S + Q ++ + Sbjct: 83 TQGNVQPTENALDVAINGRGFLQILMPNGDTNYTRDGSLKLDATGQLVTSGGLTLNPAIT 142 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + +V + A L N + E S Sbjct: 143 VPQDALSVTIGTDGTVSALQPGVAAPTVLGQIQTANFINPTGLEAVGENL--YRESAASG 200 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + Q + +++ T VN+ EEL +I+ +++Y +++K I TD+ML Sbjct: 201 APIVGTPGQAEYGTLTQGSLETSNVNVVEELVNMIETQRAYEMNSKAISTTDQML 255 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 46/219 (21%), Gaps = 27/219 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 A++ + + A I N+ N + + R + P Sbjct: 5 ALWVAKSGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLMYQNIRQVGAQSTQNTQLP 64 Query: 48 ENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + T + +A+ + F + ++ Sbjct: 65 TGLQLGTGVRTVATEKLHTQGNVQPTENALDVAINGRGFLQIL------MPNGDTNYTRD 118 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 L+ L + + + T A + +I Sbjct: 119 GSLKLDATGQLVTSGGLTLNPAITVPQDALSVTIGTDGTVSALQPGVAAPTVLGQIQTAN 178 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 ++ ++ A +++ Sbjct: 179 FINPTGLEAVGENLYRESAASGAPIVGTPGQAEYGTLTQ 217 >gi|221069320|ref|ZP_03545425.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] gi|220714343|gb|EED69711.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] Length = 260 Score = 72.0 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R + ++ A + F + D + S + Q ++ Sbjct: 76 ATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDSQGQLVTSSGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + V + + + ++ L +N ++ Sbjct: 136 VANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAMSQFINAAGLEPRGQNL--YV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S I + Y VN+ +EL +I+ +++Y +++K I +D+M Sbjct: 194 ETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LAKLAQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 42/211 (19%), Gaps = 34/211 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ Q I N+ N Y R + + Sbjct: 1 MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+A+ F + + Sbjct: 61 QLPTGLHLGLGVRTVATSRN---FLQGSLQQSSNALDVAINGNGFFEV------NMPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + S + I V + V A +++ Sbjct: 112 IAYTRDGSFEVDSQGQLVTSSGLPVANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVG 171 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 + + L + +TAS Sbjct: 172 NIAMSQFINAAGLEPRGQNLYVETASSGQPQ 202 >gi|264676572|ref|YP_003276478.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|299531284|ref|ZP_07044694.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] gi|262207084|gb|ACY31182.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|298720691|gb|EFI61638.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] Length = 260 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R + ++ A + F + D + S + Q ++ Sbjct: 76 ATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDAQGQLVTSSGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + V + + + ++ L +N ++ Sbjct: 136 VANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAMSQFINAAGLEPRGQNL--YV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S I + Y VN+ +EL +I+ +++Y +++K I +D+M Sbjct: 194 ETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LAKLAQL 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 42/211 (19%), Gaps = 34/211 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ Q I N+ N Y R + + Sbjct: 1 MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+A+ F + + Sbjct: 61 QLPTGLHLGLGVRTVATSRN---FLQGSLQQSSNALDVAINGNGFFEV------NMPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + S + I V + V A +++ Sbjct: 112 IAYTRDGSFEVDAQGQLVTSSGLPVANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVG 171 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 + + L + +TAS Sbjct: 172 NIAMSQFINAAGLEPRGQNLYVETASSGQPQ 202 >gi|149908757|ref|ZP_01897418.1| putative flagellar basal-body rod protein [Moritella sp. PE36] gi|149808299|gb|EDM68238.1| putative flagellar basal-body rod protein [Moritella sp. PE36] Length = 261 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 2/181 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V + + F + + T+ + Q ++ Sbjct: 77 TQKVFTPGSFADTGQELDMAIIGKGFFQVEQVSGEIAYTRNGQFTLNSDSQIVNSDGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ + +S ++ +A L+ N Sbjct: 137 VPSIQIPADATSITIGSDGTITAQLAGESAPQDVGQITLASFANPAGLVALGGNLYTETG 196 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + V++ EE+ +I +++Y ++ K++ DKML Sbjct: 197 S--SGAAQEGVAGEASLGQIKQRGLEGSNVSVVEEMVDMISTQRAYEMNAKVVSAADKML 254 Query: 473 Q 473 Q Sbjct: 255 Q 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 12/180 (6%), Positives = 44/180 (24%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + + ++ + + I N+ N + + + + Sbjct: 1 MSSALWTSKTGLAAQDVKMSIIANNLANVNTTGFKKDRVAFSDLFYDIKRQPGALADQNN 60 Query: 47 --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V + + + F ++++ Sbjct: 61 EIPTGVQVGNGVRVTGTQKVFTPGSFADTGQELDMAIIGKGFFQVEQV------SGEIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + +S N L ++ A+ + ++ ++ + +I+ Sbjct: 115 TRNGQFTLNSDSQIVNSDGLPLVPSIQIPADATSITIGSDGTITAQLAGESAPQDVGQIT 174 >gi|157146224|ref|YP_001453543.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157083429|gb|ABV13107.1| hypothetical protein CKO_01981 [Citrobacter koseri ATCC BAA-895] Length = 260 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANSLSITVGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSL 147 >gi|306820920|ref|ZP_07454540.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551034|gb|EFM39005.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 270 Score = 71.6 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 3/169 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + A + D + + + D G V ++ Sbjct: 105 DPNAPGEEAKRLYTRDGSFKFSVEDNQLTLVTSQGEKVLTTDDGYVQIPENSKDFAVSQN 164 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + L N ++ + S + + Sbjct: 165 GTVTAKSAEGELLELGQLKTVTFVNPEGLKAVGSNF--YVPTDNSGEPVQEEN-ETRESK 221 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + Y V L +E+ +I +++Y I++K + D ML T+ + + Sbjct: 222 IYQGYLEMSNVQLVDEMVRMITAQRAYEINSKTVQTADDMLNTINQLKR 270 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 57/269 (21%), Gaps = 28/269 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + + + T Sbjct: 3 ALWTAASGMKAQQLNVDVISNNISNVNTTGFKAQKTEFKDLLYTYSNPVSNEAKMGQPVN 62 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + + + + E +A Sbjct: 63 LQVGHGVMPVATSRI---YTTGSADKTDNPTDLAMVQGNAFFVVEDPNAPGEEAKRLYTR 119 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S+E L K + + V N+ V + K E E+ L Sbjct: 120 DGSFKFSVEDNQLTLVTSQGEKVLTTDDGYVQIPENSKDFAVSQNGTVTAKSAEGELLEL 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + TV + A + + D +Q+ +E V D Sbjct: 180 GQL---KTVTFVNPEGLKAVGSNFYVPTDNSGEPVQEENETRESKIYQGYLEMSNVQLVD 236 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPI 252 T R T N I Sbjct: 237 EMVRMITAQRAYEINSKTVQTADDMLNTI 265 >gi|89075497|ref|ZP_01161908.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] gi|89048769|gb|EAR54340.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] Length = 262 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ + ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + + TI Q ++ S + + ++ + N+ Sbjct: 110 GNIGYTRNGQFTINSEGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + +N +L S + I +S T VN+ Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + ++ + ++I N+ NA + + + T Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 45 ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + K ++A+ F + N Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + E + I D V + ++ + + Sbjct: 115 TRNGQFTINSEGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQVLGQI 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N + + Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203 >gi|51596013|ref|YP_070204.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 32953] gi|153947499|ref|YP_001401288.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|170024645|ref|YP_001721150.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis YPIII] gi|51589295|emb|CAH20916.1| flagellar basal-body rod protein FlgG (distal rod protein) [Yersinia pseudotuberculosis IP 32953] gi|152958994|gb|ABS46455.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|169751179|gb|ACA68697.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis YPIII] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + N L N + E S Sbjct: 142 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202 >gi|260767925|ref|ZP_05876859.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260615955|gb|EEX41140.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179628|gb|ADT86542.1| flagellar basal-body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 261 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNTQNTGQDLDLAVMGQGFFQIENSDGQIMYSRNGQFHVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++ I DS + +A L N + E Sbjct: 137 QPQIQVPDDAISLSVGVDGTVTITTAADSTPQELGQITLAKFINPAGLEALGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGAADELIAGEDGVGSIKQGVLEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 11/153 (7%), Positives = 32/153 (20%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + Q F ++ Sbjct: 61 ELPTGVQLGSGVRVVGTQKVFTQGNTQNTGQDLDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + E N L + + + Sbjct: 115 SRNGQFHVNSEGLMVNSQGLPLQPQIQVPDDAI 147 >gi|237731009|ref|ZP_04561490.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] gi|226906548|gb|EEH92466.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANSLSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + A + + A +++ L Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSLSITIGRDGIVSVTQQGQA---APVQVGQLN 174 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++I ++ + ++ Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGAPNE 203 >gi|146294548|ref|YP_001184972.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145566238|gb|ABP77173.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] Length = 261 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ AL + + ++ ++ + + F + Sbjct: 51 QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ V + V + ++ ++ Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + + VN+ E Sbjct: 171 GQITLVNFTNPSGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 14/185 (7%), Positives = 42/185 (22%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K + S + F ++E + Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEE------PNGDLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S E L ++ + + + ++ +A+ + +I+ Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 >gi|218249434|ref|YP_002375273.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] gi|218164622|gb|ACK74683.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] Length = 265 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + ++ E + + S + ++ D E Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNILFPEEYIQNSITISKEGIVSVKIDTSNE 168 >gi|123442782|ref|YP_001006759.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089743|emb|CAL12596.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 217 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + F + D N + S N Q ++ F ++ Sbjct: 48 NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQNGQLVTSGGFQIQPAITIPANAMSMT 107 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + +A N L N + E S + + Sbjct: 108 VGRDGIVSVTLPGQTATQQVGQLTLATFINNSGLESVGENL--YQETASSGAPNETTPGL 165 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 166 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 217 >gi|120597307|ref|YP_961881.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] gi|120557400|gb|ABM23327.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 261 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ AL + + ++ ++ + + F + Sbjct: 51 QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ V + V + ++ ++ Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + + VN+ E Sbjct: 171 GQITLVNFTNPAGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 14/185 (7%), Positives = 42/185 (22%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K + S + F ++E + Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEE------PNGDLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S E L ++ + + + ++ +A+ + +I+ Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 >gi|283833628|ref|ZP_06353369.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291071311|gb|EFE09420.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + A + + A +++ L Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQA---APVQVGQLN 174 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++I ++ + ++ Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGAPNE 203 >gi|237799215|ref|ZP_04587676.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022070|gb|EGI02127.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. oryzae str. 1_6] Length = 192 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 63/191 (32%), Gaps = 14/191 (7%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52 ++ + + N +S +I N N D Y R+ ++T S T+ Sbjct: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLSTASAQIALGQGVGYLGTGTTL 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + D L + ++ + + +D + ++ ++ Sbjct: 62 SDVRRIYNSYLDTQLQSSTALSADAVAYSGQAGKTDTLLSD--NATGISVQLADFFTKMQ 119 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 + + ++ + + A + FN+ + ++ + + ++ + + L Sbjct: 120 GIATSATQSAERSSFLTQASALSARFNSVSSQLSTQNDNVNSQLNTYTKQVNELTTTLAS 179 Query: 173 VNDAIKFKTAS 183 +N I +A Sbjct: 180 LNKQITQASAG 190 >gi|145297456|ref|YP_001140297.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142850228|gb|ABO88549.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 261 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + ++ + N + L Sbjct: 130 NSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFTNPAGLEALGG 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + S + + I + + VN+ EE+ +I +++Y ++ K++ Sbjct: 190 NL--YRATGASGEAIEGVPGEEAMGAIKQFTLESSNVNVVEEMVDMITTQRAYEMNAKVV 247 Query: 466 MFTDKML 472 D+ML Sbjct: 248 SAADQML 254 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 36/199 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ASI N+ N + + R Sbjct: 1 MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + + + F + Sbjct: 61 LSPIGIQMGNGVRVVGTQKV---FTPGQFQNTNQELDMAVVGAGF------FGVERPDGE 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155 + + + E N + + + T + + + + + Sbjct: 112 TAYTRNGQWHRNAEGLLVNSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELG 171 Query: 156 IELEISNLRRFLSELTVVN 174 + E N Sbjct: 172 RITLTNFTNPAGLEALGGN 190 >gi|302390533|ref|YP_003826354.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] gi|302201161|gb|ADL08731.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] Length = 268 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 1/158 (0%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D I D +S N++ + D Sbjct: 112 AFTRDGSFKVSIDGDDRYLVTSEGYYVLDTDEDYISIPEDLTDINISANGTITGRDADGN 171 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + +A LL N + + ++ F I + + V Sbjct: 172 IEEIGTIALARFLNPEGLLAVGNNLFEQTAASG-EYQLKEDPNEPGFGTILQGFLEMSNV 230 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ LI +++Y I+ K I D+ML + Sbjct: 231 QVVDEMVNLIVAQRAYEINTKAIQTADEMLGQANNLRR 268 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 13/185 (7%), Positives = 41/185 (22%), Gaps = 37/185 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + I N+ N + Y + Sbjct: 1 MMRALWSASSGMLAQQLNVDVISNNLANVNTTGYKKSRVEFKDLLYETLRRPDVFQPGQG 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + L + + F ++ + Sbjct: 61 NPVGLQVGHGVRPASTTR---FFTEGNLQQTGNTFDLAIEGEGFFVVE------RPDGSR 111 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + S++ + L + + +++ + ++ I A+ I Sbjct: 112 AFTRDGSFKVSIDG-----DDRYLVTSEGYYVLDTDEDYISIPEDLTDINISANGTITGR 166 Query: 160 ISNLR 164 ++ Sbjct: 167 DADGN 171 >gi|90579911|ref|ZP_01235719.1| putative polar flagellar FlgG [Vibrio angustum S14] gi|90438796|gb|EAS63979.1| putative polar flagellar FlgG [Vibrio angustum S14] Length = 262 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ + ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + + TI Q ++ S + + ++ + N+ Sbjct: 110 GNIGYTRNGQFTINSEGQLVTSGSGYPVQPEIVVPDDAVGITVGTDGEVSARIRGEQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + +N +L S + I +S T VN+ Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + ++ + ++I N+ NA + + + T Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 45 ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + K ++A+ F + N Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + E + I D V + ++ + + Sbjct: 115 TRNGQFTINSEGQLVTSGSGYPVQPEIVVPDDAVGITVGTDGEVSARIRGEQENQVLGQI 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N + + Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203 >gi|83646774|ref|YP_435209.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] gi|83634817|gb|ABC30784.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] Length = 660 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/331 (9%), Positives = 88/331 (26%), Gaps = 8/331 (2%) Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 K+++ + + +N + + D + + I + + Sbjct: 332 KDLKENPAKPTAKVQAFGNLNPELADFANFPAEGEDPISFEVMQSNGEKLQINMEFTKQA 391 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PK 269 N V D + P +NF+ S + I ++ Sbjct: 392 ANVWNVTLRDTEGELVSGPYSLNFDSNGILAAESRTFSASIPDSDDTALSVELKLYESDS 451 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + + D V P+ + + + ++ ++ N + Sbjct: 452 KSLTQKVDVTDGVSPVADGKEKGLLEKVTFDEKGVAHLSYSNGNTAEGPRIALVDRGTEA 511 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + N + D + + + Y + K Sbjct: 512 SANFDLSLSGLTSLSGVNSVEVSDV-DGFEAGRVTEFSFQEDGVIAFKYSNGQEKTGPQV 570 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A L + + + F + V L E + Sbjct: 571 AMANFLNVNALTSEGGSLFS---AGEDAGITVGAANSGGFGKVKGESIELSNVELSREFA 627 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I +++ Y S++++ +++M++ L V+ Sbjct: 628 EIIIIQRGYQASSQVMNVSNEMIENLYNSVR 658 >gi|126668560|ref|ZP_01739514.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] gi|126626965|gb|EAZ97608.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] Length = 262 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 51/185 (27%), Gaps = 2/185 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F+ + D + + + + + Sbjct: 77 TVKQFTQGNLQITEQPLDMAVNGRGFLQVQLPDGQTAYTRDGQFQLNSDGDVVNPSGYAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + NV + N + L N + + Sbjct: 137 EPNINIPENATNVTIGRDGTVTAVTDDQAAPINLGQITLVDFINPQGLQAIGNNL--FKQ 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N S + + + V + EEL +I +++Y +++K++ D+ML Sbjct: 195 TNASGDPTEGEPGLAGLGSLEQGSIESSNVEVVEELVNMITTQRAYEMNSKVVSTVDQML 254 Query: 473 QTLLE 477 Q + Sbjct: 255 QFITN 259 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 14/196 (7%), Positives = 39/196 (19%), Gaps = 30/196 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + ++ + ++I N+ N + + R + V Sbjct: 1 MNPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQVKRQPGGLNTQNT 60 Query: 52 --------VVTQRSENK--NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R L + + F ++ + Sbjct: 61 ELPSGLQLGTGVRVVGTVKQFTQGNLQITEQPLDMAVNGRGFLQVQ------LPDGQTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + + N S L + + T A + Sbjct: 115 TRDGQFQLNSDGDVVNPSGYALEPNINIPENATNVTIGRDGTVTAVTDDQAAPINLGQIT 174 Query: 159 EISNLRRFLSELTVVN 174 + + + N Sbjct: 175 LVDFINPQGLQAIGNN 190 >gi|332994160|gb|AEF04215.1| flagellar basal body rod protein FlgG [Alteromonas sp. SN2] Length = 262 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 71/213 (33%), Gaps = 3/213 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ A ++ ++ +++ + A + + D Sbjct: 50 NQPGGRSSADTELPSGLMLGSGSKVVSTQKAHTQGNLLTTDNALDMSIQGRGYFEILQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q ++ + V+ ++ ++ + + Sbjct: 110 GTIAYSRNGQFSMNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + + I++ T VN+ Sbjct: 170 VLGQMNLSDFINPTGLQPIGQNL--YVETASSGAPIQGVPGLQGIGTIAQGTLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EEL LI+ ++ Y +++K+I D+ML +++ Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/168 (7%), Positives = 39/168 (23%), Gaps = 33/168 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + A A + N+ NA + + + Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 VV+ + + L +A+ + + + + Sbjct: 61 ELPSGLMLGSGSKVVSTQKAH---TQGNLLTTDNALDMSIQGRGYFEILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + + E+ Q + E+ Sbjct: 112 IAYSRNGQFSMNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159 >gi|186895116|ref|YP_001872228.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|186698142|gb|ACC88771.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + N L N + E S Sbjct: 142 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTIFINNSGLESVGENL--YQETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 43/205 (20%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + + Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161 + + + A + V + +Q A Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTI 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N + ++ + Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202 >gi|225551864|ref|ZP_03772807.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] gi|225371659|gb|EEH01086.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] Length = 265 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%) Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 ++ ++ L N + E S + + + Sbjct: 165 NNNEPIELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILE 222 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE+ +I +++Y I++K I +D ML + Sbjct: 223 MSNVSIAEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + E + + S + ++ D + E Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSIAISEEGIVSVKIDNNNE 168 >gi|331652131|ref|ZP_08353150.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] gi|331050409|gb|EGI22467.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNETGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 47/209 (22%), Gaps = 24/209 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + A + + A +++ L Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQA---APVQVGQLN 174 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++I ++ + ++ Sbjct: 175 LTTFMNETGLESIGENLYTETQSSGAPNE 203 >gi|216263448|ref|ZP_03435443.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] gi|215980292|gb|EEC21113.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] Length = 265 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSKGMGKLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + +I N+ N + + + TQ Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89 + L + +G + + + + E Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83 >gi|28211309|ref|NP_782253.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203749|gb|AAO36190.1| flagellar basal-body rod protein flgG [Clostridium tetani E88] Length = 285 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 31/134 (23%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 +L V ++ ++ +I NI N + + Y R+D V Sbjct: 1 MLRVLWSGRSAMYAQQEKLDAISNNIANVNTEGYKRQDVSFQDLMNETLDRRGYPVNEEG 60 Query: 55 QRSENKNMFDKV----LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 R+ K + F + Sbjct: 61 NRNLIHGTGVKTGPWIRDNTQGTLNNTGSSTDFAIDGNGYFKVFSNDKEYYIRAGNFNLD 120 Query: 111 LESYSKNLSEDILG 124 + + + +IL Sbjct: 121 NKGNLVDKNGNILE 134 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 27/53 (50%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + V + + + Y V +++E+S +I ++++ S++ + D+M Sbjct: 223 PVQGVNPEAVNSDVLQGYVERSNVRMEKEMSDMIVSQRAFEFSSRAVKAADEM 275 >gi|15595119|ref|NP_212908.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi B31] gi|195941595|ref|ZP_03086977.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi 80a] gi|216264940|ref|ZP_03436932.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221217835|ref|ZP_03589302.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223889350|ref|ZP_03623936.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224532949|ref|ZP_03673558.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224533277|ref|ZP_03673871.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225548956|ref|ZP_03769933.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|225549893|ref|ZP_03770854.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|226320636|ref|ZP_03796195.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|226321474|ref|ZP_03797001.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|3913655|sp|O51715|FLGG_BORBU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|2688724|gb|AAC67132.1| flagellar basal-body rod protein (flgG) [Borrelia burgdorferi B31] gi|215981413|gb|EEC22220.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221192141|gb|EEE18361.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223885036|gb|EEF56140.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224512113|gb|EEF82505.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224513442|gb|EEF83799.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225369352|gb|EEG98804.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|225370559|gb|EEG99995.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|226233270|gb|EEH32022.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|226233959|gb|EEH32681.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|312149206|gb|ADQ29277.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi N40] Length = 265 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + ++ E + + S + ++ D E Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNILFPEEYIQNSITISEEGIVSVKIDTSNE 168 >gi|315127351|ref|YP_004069354.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] gi|315015865|gb|ADT69203.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] Length = 262 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ ++ + + + F D Sbjct: 50 NQPGGRSSQDTEMPSGLMLGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + + T + ++ + ++ ++ ++ + N Sbjct: 110 GNIAYSRNGQFTTDGEGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVSVRIKGQAENV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N E S + I + T VN+ Sbjct: 170 VIGQITISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+M+ Sbjct: 228 TEELVNLIETQRVYEMNSKVISAVDEMM 255 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 36/165 (21%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + I N+ NA Y + + Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 46 -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + KN + +++ F + + N Sbjct: 61 EMPSGLMLGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQ------PDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + E + + ++ ++ + EV Sbjct: 115 SRNGQFTTDGEGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVS 159 >gi|15801195|ref|NP_287212.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 EDL933] gi|15830710|ref|NP_309483.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. Sakai] gi|16129041|ref|NP_415596.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|26247218|ref|NP_753258.1| flagellar basal body rod protein FlgG [Escherichia coli CFT073] gi|89107924|ref|AP_001704.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. W3110] gi|91210230|ref|YP_540216.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110641254|ref|YP_668984.1| flagellar basal body rod protein FlgG [Escherichia coli 536] gi|110805095|ref|YP_688615.1| flagellar basal body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|117623264|ref|YP_852177.1| flagellar basal body rod protein FlgG [Escherichia coli APEC O1] gi|157156521|ref|YP_001462312.1| flagellar basal body rod protein FlgG [Escherichia coli E24377A] gi|168747146|ref|ZP_02772168.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|168758629|ref|ZP_02783636.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|168764490|ref|ZP_02789497.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|168767737|ref|ZP_02792744.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|168773923|ref|ZP_02798930.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|168783608|ref|ZP_02808615.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|168790013|ref|ZP_02815020.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|168802023|ref|ZP_02827030.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|170080729|ref|YP_001730049.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170679890|ref|YP_001744102.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|188492805|ref|ZP_03000075.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|191168453|ref|ZP_03030241.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|191172450|ref|ZP_03033991.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|193064556|ref|ZP_03045636.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|193069501|ref|ZP_03050455.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194438123|ref|ZP_03070216.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|195935468|ref|ZP_03080850.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|208806632|ref|ZP_03248969.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208815071|ref|ZP_03256250.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208822750|ref|ZP_03263069.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209399139|ref|YP_002269924.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209918332|ref|YP_002292416.1| flagellar basal body rod protein FlgG [Escherichia coli SE11] gi|215486287|ref|YP_002328718.1| flagellar basal body rod protein FlgG [Escherichia coli O127:H6 str. E2348/69] gi|217328263|ref|ZP_03444345.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218553656|ref|YP_002386569.1| flagellar basal body rod protein FlgG [Escherichia coli IAI1] gi|218557960|ref|YP_002390873.1| flagellar basal body rod protein FlgG [Escherichia coli S88] gi|218694612|ref|YP_002402279.1| flagellar basal body rod protein FlgG [Escherichia coli 55989] gi|218700419|ref|YP_002408048.1| flagellar basal body rod protein FlgG [Escherichia coli IAI39] gi|218704486|ref|YP_002412005.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|227886564|ref|ZP_04004369.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|237706936|ref|ZP_04537417.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|238900332|ref|YP_002926128.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|253773898|ref|YP_003036729.1| flagellar basal body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161184|ref|YP_003044292.1| flagellar basal body rod protein FlgG [Escherichia coli B str. REL606] gi|254792460|ref|YP_003077297.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. TW14359] gi|256018665|ref|ZP_05432530.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|256023224|ref|ZP_05437089.1| flagellar basal body rod protein FlgG [Escherichia sp. 4_1_40B] gi|260843318|ref|YP_003221096.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|260854561|ref|YP_003228452.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260867441|ref|YP_003233843.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|261227017|ref|ZP_05941298.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK2000] gi|261256251|ref|ZP_05948784.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK966] gi|291282098|ref|YP_003498916.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|293404362|ref|ZP_06648356.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|293409444|ref|ZP_06653020.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|293433368|ref|ZP_06661796.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|297516691|ref|ZP_06935077.1| flagellar basal body rod protein FlgG [Escherichia coli OP50] gi|298380142|ref|ZP_06989747.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|300816780|ref|ZP_07097000.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300821141|ref|ZP_07101290.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300899597|ref|ZP_07117836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300902469|ref|ZP_07120451.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300918680|ref|ZP_07135261.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300922604|ref|ZP_07138704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300928370|ref|ZP_07143904.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300938643|ref|ZP_07153372.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300950173|ref|ZP_07164118.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300954382|ref|ZP_07166836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300974382|ref|ZP_07172594.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300982619|ref|ZP_07176203.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|301023265|ref|ZP_07187062.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|301029707|ref|ZP_07192761.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|301051138|ref|ZP_07197968.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|301304983|ref|ZP_07211085.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|301328552|ref|ZP_07221613.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301644990|ref|ZP_07244956.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|306814073|ref|ZP_07448246.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307137713|ref|ZP_07497069.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|307310144|ref|ZP_07589794.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|309798072|ref|ZP_07692447.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|312968848|ref|ZP_07783055.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|331641622|ref|ZP_08342757.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331646336|ref|ZP_08347439.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331657140|ref|ZP_08358102.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331662484|ref|ZP_08363407.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331667478|ref|ZP_08368342.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331672598|ref|ZP_08373387.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331676869|ref|ZP_08377565.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331682580|ref|ZP_08383199.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332279734|ref|ZP_08392147.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|78100014|sp|P0ABX7|FLGG_ECO57 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100015|sp|P0ABX6|FLGG_ECOL6 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100016|sp|P0ABX5|FLGG_ECOLI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|12514619|gb|AAG55824.1|AE005318_1 flagellar biosynthesis, cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. EDL933] gi|26107619|gb|AAN79818.1|AE016759_92 Flagellar basal-body rod protein flgG [Escherichia coli CFT073] gi|1787318|gb|AAC74162.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|4062656|dbj|BAA35887.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K12 substr. W3110] gi|13360920|dbj|BAB34879.1| flagellar basal body rod protein flgG [Escherichia coli O157:H7 str. Sakai] gi|91071804|gb|ABE06685.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110342846|gb|ABG69083.1| flagellar basal-body rod protein FlgG [Escherichia coli 536] gi|110614643|gb|ABF03310.1| flagellar basal-body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|115512388|gb|ABJ00463.1| flagellar basal-body rod protein FlgG [Escherichia coli APEC O1] gi|157078551|gb|ABV18259.1| flagellar basal-body rod protein FlgG [Escherichia coli E24377A] gi|169888564|gb|ACB02271.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170517608|gb|ACB15786.1| flagellar basal-body rod protein FlgG [Escherichia coli SMS-3-5] gi|187770380|gb|EDU34224.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|188018193|gb|EDU56315.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|188488004|gb|EDU63107.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|188999095|gb|EDU68081.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|189354587|gb|EDU73006.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|189363057|gb|EDU81476.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|189365523|gb|EDU83939.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|189370495|gb|EDU88911.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|189375944|gb|EDU94360.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|190901472|gb|EDV61233.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|190907334|gb|EDV66932.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|192927808|gb|EDV82422.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|192957249|gb|EDV87698.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194423059|gb|EDX39053.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|208726433|gb|EDZ76034.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208731719|gb|EDZ80407.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208738235|gb|EDZ85918.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209160539|gb|ACI37972.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209773358|gb|ACI84991.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773360|gb|ACI84992.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773362|gb|ACI84993.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773364|gb|ACI84994.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773366|gb|ACI84995.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209911591|dbj|BAG76665.1| flagellar basal-body rod protein FlgG [Escherichia coli SE11] gi|215264359|emb|CAS08716.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O127:H6 str. E2348/69] gi|217318690|gb|EEC27116.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218351344|emb|CAU97050.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli 55989] gi|218360424|emb|CAQ97978.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI1] gi|218364729|emb|CAR02419.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli S88] gi|218370405|emb|CAR18212.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI39] gi|218431583|emb|CAR12462.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli UMN026] gi|222032831|emb|CAP75570.1| flagellar basal-body rod protein flgG [Escherichia coli LF82] gi|226898146|gb|EEH84405.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|227836768|gb|EEJ47234.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|238861100|gb|ACR63098.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|242376882|emb|CAQ31599.1| flagellar basal-body rod protein FlgG, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324942|gb|ACT29544.1| flagellar basal-body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973085|gb|ACT38756.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli B str. REL606] gi|253977299|gb|ACT42969.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BL21(DE3)] gi|254591860|gb|ACT71221.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. TW14359] gi|257753210|dbj|BAI24712.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257758465|dbj|BAI29962.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|257763797|dbj|BAI35292.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|260449782|gb|ACX40204.1| flagellar basal-body rod protein FlgG [Escherichia coli DH1] gi|281178187|dbj|BAI54517.1| flagellar basal-body rod protein FlgG [Escherichia coli SE15] gi|284920901|emb|CBG33964.1| flagellar basal-body rod protein FlgG [Escherichia coli 042] gi|290761971|gb|ADD55932.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|291324187|gb|EFE63609.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|291428948|gb|EFF01973.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|291469912|gb|EFF12396.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|294490415|gb|ADE89171.1| flagellar basal-body rod protein FlgG [Escherichia coli IHE3034] gi|298279840|gb|EFI21348.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|299877395|gb|EFI85606.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|300297159|gb|EFJ53544.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|300307084|gb|EFJ61604.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|300318618|gb|EFJ68402.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300356868|gb|EFJ72738.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300397110|gb|EFJ80648.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|300405501|gb|EFJ89039.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300410625|gb|EFJ94163.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300414174|gb|EFJ97484.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300421081|gb|EFK04392.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300450520|gb|EFK14140.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300456428|gb|EFK19921.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300463628|gb|EFK27121.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300526440|gb|EFK47509.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300530554|gb|EFK51616.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300839701|gb|EFK67461.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|300844944|gb|EFK72704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301076719|gb|EFK91525.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|305852710|gb|EFM53158.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306909862|gb|EFN40356.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|307553080|gb|ADN45855.1| flagellar basal-body rod protein FlgG [Escherichia coli ABU 83972] gi|308118355|gb|EFO55617.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|309701350|emb|CBJ00651.1| flagellar basal-body rod protein FlgG [Escherichia coli ETEC H10407] gi|312286250|gb|EFR14163.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|312945640|gb|ADR26467.1| flagellar basal body rod protein FlgG [Escherichia coli O83:H1 str. NRG 857C] gi|315060356|gb|ADT74683.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|315135710|dbj|BAJ42869.1| flagellar basal-body rod protein flgG [Escherichia coli DH1] gi|315253879|gb|EFU33847.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 85-1] gi|315287367|gb|EFU46778.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 110-3] gi|315291072|gb|EFU50435.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 153-1] gi|315296709|gb|EFU56004.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 16-3] gi|315618248|gb|EFU98838.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|320189761|gb|EFW64417.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC1212] gi|320196440|gb|EFW71063.1| Flagellar basal-body rod protein FlgG [Escherichia coli WV_060327] gi|320200974|gb|EFW75558.1| Flagellar basal-body rod protein FlgG [Escherichia coli EC4100B] gi|320637529|gb|EFX07329.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. G5101] gi|320643090|gb|EFX12291.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. 493-89] gi|320648548|gb|EFX17203.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. H 2687] gi|320653862|gb|EFX21936.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659342|gb|EFX26911.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. USDA 5905] gi|320664477|gb|EFX31628.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. LSU-61] gi|323156885|gb|EFZ43019.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323163703|gb|EFZ49523.1| flagellar basal-body rod protein FlgG [Escherichia coli E128010] gi|323175691|gb|EFZ61285.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] gi|323185799|gb|EFZ71160.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|323190590|gb|EFZ75862.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379083|gb|ADX51351.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323937818|gb|EGB34082.1| flagellar basal-body rod protein FlgG [Escherichia coli E1520] gi|323942547|gb|EGB38714.1| flagellar basal-body rod protein FlgG [Escherichia coli E482] gi|323947620|gb|EGB43624.1| flagellar basal-body rod protein FlgG [Escherichia coli H120] gi|323953236|gb|EGB49102.1| flagellar basal-body rod protein FlgG [Escherichia coli H252] gi|323957902|gb|EGB53614.1| flagellar basal-body rod protein FlgG [Escherichia coli H263] gi|323962677|gb|EGB58255.1| flagellar basal-body rod protein FlgG [Escherichia coli H489] gi|323967019|gb|EGB62445.1| flagellar basal-body rod protein FlgG [Escherichia coli M863] gi|323973333|gb|EGB68522.1| flagellar basal-body rod protein FlgG [Escherichia coli TA007] gi|323976549|gb|EGB71637.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|324007918|gb|EGB77137.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 57-2] gi|324013352|gb|EGB82571.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 60-1] gi|324017418|gb|EGB86637.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 117-3] gi|324117351|gb|EGC11258.1| flagellar basal-body rod protein FlgG [Escherichia coli E1167] gi|326339300|gb|EGD63114.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1125] gi|326344739|gb|EGD68487.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1044] gi|327253477|gb|EGE65115.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|330910892|gb|EGH39402.1| flagellar basal-body rod protein FlgG [Escherichia coli AA86] gi|331038420|gb|EGI10640.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331045088|gb|EGI17215.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331055388|gb|EGI27397.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331060906|gb|EGI32870.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331065063|gb|EGI36958.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331070241|gb|EGI41607.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331075558|gb|EGI46856.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331080211|gb|EGI51390.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332102086|gb|EGJ05432.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|333004888|gb|EGK24408.1| flagellar basal-body rod protein FlgG [Shigella flexneri VA-6] Length = 260 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|253827676|ref|ZP_04870561.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253511082|gb|EES89741.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 765 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%) Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129 + + L +F++ E + + +Y N + + N ++ T++D Sbjct: 332 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 391 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + N+ E I + E + + Sbjct: 392 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 451 Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 + + + + + N G T +S T Sbjct: 452 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 511 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300 + + V S+ G LL+ D N+ E+ +I Sbjct: 512 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 571 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358 I+ N++ P + + + + + + Sbjct: 572 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 631 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + N + ++ ++ + + +A + L + N + Sbjct: 632 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 691 Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + + T V+ L+ LI ++ Y +S K I Sbjct: 692 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 751 Query: 468 TDKMLQTLLEGVK 480 D+++Q ++ + Sbjct: 752 ADQLMQEAIQLKR 764 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/363 (7%), Positives = 77/363 (21%), Gaps = 34/363 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 ++ + NI N + + Sbjct: 1 MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGFRANSPEFKSLFSTHLNYVNSNSPVAN 60 Query: 49 ----NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHY 96 VT+ + D + + + + Sbjct: 61 DYNYGVTIGSNAINTN---DGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGA 117 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + E Y N S I+ + T A +++ + + Sbjct: 118 QQNYFTRDGSFSLDGEGYLVNSSG--YYMYGINLGKIAADGTLTGANNLEQDYDNLGGSV 175 Query: 157 ELEISNLRRFLSEL---TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 I + + T VN A+ L + + + + Sbjct: 176 LEPIQIPKEMHYQPTLTTQVNLAVNLNRTQNAQGITALQDENGNFSMEKFLALDMNSLMD 235 Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 ++ ++ + + +V ++ + N G +++ + +K Sbjct: 236 SSGKLIDAKNYKDITFSVEQNGETKNYTFTYGAEGENGFKTTGELITLIKERTGLDLALK 295 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 S ++ + L S + ++ N + + Sbjct: 296 LDSLGNPSDCSLYLSNNTMQEMTLSISGRLAQKLGLSTNNETLESAFQSQVETFTENTNY 355 Query: 334 ISE 336 + Sbjct: 356 PNG 358 >gi|224531677|ref|ZP_03672309.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] gi|224511142|gb|EEF81548.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] Length = 265 Score = 71.6 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 18/212 (8%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 KI A +I + N L ++A G + P + G F D ++L Sbjct: 71 GTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRELVT 130 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + I +Y N + D G VS K N + + Sbjct: 131 SQGYKVLPNIFFPEEYIQNSITISDQGIVSVKIDNNNEPI----------------ELGQ 174 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 ++ L N + E S + + + V++ EE+ Sbjct: 175 IEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGTEGMGRLKQGILEMSNVSIAEEM 232 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I +++Y I++K I +D ML + Sbjct: 233 VTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 9/174 (5%), Positives = 35/174 (20%), Gaps = 27/174 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQDRAGTPATENT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + ++ + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGTYAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + E + + S + + ++ D + E Sbjct: 115 TRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSITISDQGIVSVKIDNNNE 168 >gi|260886211|ref|ZP_05897474.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839793|ref|YP_004414373.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|260863930|gb|EEX78430.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747557|gb|AEC00914.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] Length = 263 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 58/186 (31%), Gaps = 5/186 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPSFLRDG 354 I + ++ I+ D + + ++ ++ L DG Sbjct: 80 IFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSFKLDQNRRLVTTDGYPLADG 139 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 ++ + +AG + ++ L +N + E + Sbjct: 140 ITLDANAPSDSIVIAGDGQVSCTPAGGNVTAVGQITLSRFVNPAGLFAIGKNL--FKETD 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + +++ + + EE+ +I +++Y ++K I +D ML+ Sbjct: 198 ASGNAIDSNPGEEGAGTLTQGVVEMSNIQIVEEMVNMIVAQRAYESNSKAITTSDSMLEI 257 Query: 475 LLEGVK 480 + Sbjct: 258 ANSLKR 263 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 7/157 (4%), Positives = 22/157 (14%), Gaps = 15/157 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A + + NI N + + Sbjct: 1 MMRALWSAASGMKAQQDNMDVVAHNIANVNTFGSKKVRAEFQDLVYQNLRAAGAQSGADS 60 Query: 57 SE--------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + E + + + Sbjct: 61 QYPTGLAIGLGTRTAATQRIFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + L + +A + + Sbjct: 121 KLDQNRRLVTTDGYPLADGITLDANAPSDSIVIAGDG 157 >gi|312148533|gb|ADQ31192.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi JD1] Length = 265 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + ++ E + + S + ++ D E Sbjct: 112 YAYTRDGSFKIDSNRELVTNQGYKVLPNILFPEEYIQNSITISEEGIVSVKIDTSNE 168 >gi|330445350|ref|ZP_08309002.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489541|dbj|GAA03499.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 262 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ + ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + + TI + Q ++ S + + ++ + N+ Sbjct: 110 GNIGYTRNGQFTINADGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + +N +L S + I +S T VN+ Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + ++ + ++I N+ NA + + + T Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 45 ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + K ++A+ F + N Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + I D V + ++ + + Sbjct: 115 TRNGQFTINADGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQVLGQI 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N + + Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203 >gi|255323568|ref|ZP_05364698.1| flagellar hook protein [Campylobacter showae RM3277] gi|255299282|gb|EET78569.1| flagellar hook protein [Campylobacter showae RM3277] Length = 543 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 57/184 (30%), Gaps = 1/184 (0%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 D + +G + + + I S + Sbjct: 360 TNGELNFDHEGRLVNSTLSALDNNGSQVELDFGTPVAAGQIYSGVTSTSQAKSISIAQDG 419 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + +++ + + ++ + L + N + + Sbjct: 420 VREGILKDYYTNDSGNILAQFTNGQVRSVGKVALYHFQNEQGLAKMGDNIYSQSANSGAA 479 Query: 418 SHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + ++ ++ S V+L + L+ +I +++Y+ + K I +++MLQ + Sbjct: 480 FFYKDAGGKSIYGAKLASSMLEQSNVDLAQALTEVIVTQKAYDANAKSITTSNEMLQRAI 539 Query: 477 EGVK 480 E + Sbjct: 540 ELKR 543 >gi|24112486|ref|NP_706996.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 301] gi|30062614|ref|NP_836785.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|24051372|gb|AAN42703.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 301] gi|30040860|gb|AAP16591.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 2457T] gi|281600496|gb|ADA73480.1| Flagellar basal body rod protein flgG [Shigella flexneri 2002017] gi|313650470|gb|EFS14877.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|332758238|gb|EGJ88561.1| flagellar basal-body rod protein FlgG [Shigella flexneri 4343-70] gi|332759659|gb|EGJ89964.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2747-71] gi|332761424|gb|EGJ91708.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-671] gi|332767686|gb|EGJ97879.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2930-71] gi|333005399|gb|EGK24917.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-218] gi|333019426|gb|EGK38709.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-304] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|157160605|ref|YP_001457923.1| flagellar basal body rod protein FlgG [Escherichia coli HS] gi|170020526|ref|YP_001725480.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|312971215|ref|ZP_07785393.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] gi|157066285|gb|ABV05540.1| flagellar basal-body rod protein FlgG [Escherichia coli HS] gi|169755454|gb|ACA78153.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|310336417|gb|EFQ01603.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N Y R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGYKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|187918627|ref|YP_001884192.1| flagellar basal body rod protein FlgG [Borrelia hermsii DAH] gi|119861475|gb|AAX17270.1| flagellar basal-body rod protein FlgG [Borrelia hermsii DAH] Length = 265 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L N + E S + + V++ EE+ +I Sbjct: 180 FVNPAGLNAIGNNI--FKETIGSGEEISGTPGSDGMGRLRQGILEMSNVSIAEEMVTMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y I++K I +D ML + Sbjct: 238 AQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/174 (6%), Positives = 32/174 (18%), Gaps = 27/174 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + ++ L A + F + Sbjct: 61 VSPLGNQVGHGTKVSATHRIFEQGNLQATNLNTDVAIEGNGFYKIL------LPDGTYGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + L + + + S + ++ D E Sbjct: 115 TRDGSFKIDANGALVTSQGYKLLPDISFPEGYIKDSITISQEGIISVKVDESPE 168 >gi|73539452|ref|YP_299819.1| flagellar basal body rod protein FlgG [Ralstonia eutropha JMP134] gi|72122789|gb|AAZ64975.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 261 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + + F + D + S + N Q ++ F+ Sbjct: 82 TQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + S N +A L N +++ + S Sbjct: 142 IPANTTSMTVARDGTVSVTQPGSSNNVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + ++Y VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNTTVPGLNGAGVLQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQTSDQMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/170 (7%), Positives = 33/170 (19%), Gaps = 21/170 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + Q I N+ N + R + T Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEDLMYQNIRQPGALSSDQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + +H + + + Sbjct: 61 TLPSGLQLGTGVR---PVATERIHTQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + S ++ + A ++ Sbjct: 118 GSFQVDQNGQLVTSSGFVIQPAITIPANTTSMTVARDGTVSVTQPGSSNN 167 >gi|332342624|gb|AEE55958.1| flagellar basal-body rod protein FlgG [Escherichia coli UMNK88] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 32/156 (20%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VT + L +++ Q F + + Sbjct: 61 TLPSGLQIGTGVRPVTTERLHSQ---GNLSQTNNSKDVAIKGQGFFQVM------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 S + + + A + Sbjct: 112 SAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|313905135|ref|ZP_07838504.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470038|gb|EFR65371.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 336 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 78/325 (24%), Gaps = 10/325 (3%) Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + I+N+ + S + D + Sbjct: 22 LGNNIANVNTNGFKSQNYTFKDAMYQTSAASSGGARDADGTATIGGTNPSQFGYGSVQGA 81 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 +TS IN + + + D ++ + + Sbjct: 82 IATDFTSSTPQYVGGFNASINGSGFFITKAANSTVALSGDHTTQANVEADSTILKNANFN 141 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + + +P G + N+ D + + + +S Sbjct: 142 YTRVGQFTIDANGYMVDANKNFVYGYQPTNPTTGTANNISDPTSYDETRLVALRAPAEVS 201 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + N G + + + +A Sbjct: 202 ADGNTFSFAGQALQLKSVQVDNDGIIKATINNSNGDAMNVVLGKVAIAAFQNQEGLAKAG 261 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 N N+ + + Y V+L +E S +I E Sbjct: 262 NNTFNTRVGDNTGLLTATVPGGATP----------SLMGGYLEGSNVDLAKEFSDMITTE 311 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 + + + KLI +D++LQ L+ + Sbjct: 312 RGFQANAKLITVSDEVLQELVNMKR 336 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/282 (8%), Positives = 67/282 (23%), Gaps = 14/282 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + A + + + + NI N + + ++ + + + Sbjct: 1 MLRAMDSAVSGLRSHQNKLDVLGNNIANVNTNGFKSQNYTFKDAMYQTSAASSGGARDAD 60 Query: 63 FDKVLHAHS-SAIGQQRLLQSFE--------ALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + S G + + +A + + + +L Sbjct: 61 GTATIGGTNPSQFGYGSVQGAIATDFTSSTPQYVGGFNASINGSGFFITKAANSTVALSG 120 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + T++ NA + DA+K + Sbjct: 121 DHTTQANVEADSTILKNANFNYTRVGQFTIDANGYMVDANKNFVYGYQPTNPTTGTANNI 180 Query: 174 NDAIKFKTA-----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +D + + ++ + + S+G + Sbjct: 181 SDPTSYDETRLVALRAPAEVSADGNTFSFAGQALQLKSVQVDNDGIIKATINNSNGDAMN 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 + + N + N F V ++ +A G Sbjct: 241 VVLGKVAIAAFQNQEGLAKAGNNTFNTRVGDNTGLLTATVPG 282 >gi|291613040|ref|YP_003523197.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] gi|291583152|gb|ADE10810.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + F + D + S Q ++ F+ Sbjct: 82 TQGNLQQTSNQLDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQIVTSNGFVVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 V + + +A L +N +LE S Sbjct: 142 IPANATTVTIGQDGVVTVTQPGATAPVQVGSMQLATFINPTGLESMGQNM--YLETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ IS+ Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 TPSTNVPGTNGTGSISQGYVETSNVNVVEELVNMIQTQRAYEINSKAITVSDQMLQKLAQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/162 (6%), Positives = 29/162 (17%), Gaps = 33/162 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ ++ Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLEAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQNLRQPGAQSSQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L S+ + F + Sbjct: 61 QIPSGLQIGTGVRPVATERIH---TQGNLQQTSNQLDVAIQGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 + + + + ++ + A Sbjct: 112 TAYTRDGSFQTDSQGQIVTSNGFVVQPAITIPANATTVTIGQ 153 >gi|251789170|ref|YP_003003891.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] gi|247537791|gb|ACT06412.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S N Q ++ F N+ Sbjct: 94 DLAIKGAGFFQVLMPDGTTAYTRDGSFQQDSNGQLVTSSGFQVQPVITIPANSSNLTVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L N E S + Sbjct: 154 DGVVTVTQQGQAAPVQIGQLNLAMFINEAGLENLGENLYA--ETASSGAPTQSTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + + T VN+ EEL +I+ +++Y I++K I TD+MLQ L + Sbjct: 212 GLIYQKFVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 30/149 (20%), Gaps = 21/149 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ N I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + +H S + + Sbjct: 61 TLPSGLQLGTGVR---PVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 118 GSFQQDSNGQLVTSSGFQVQPVITIPANS 146 >gi|317153844|ref|YP_004121892.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] gi|316944095|gb|ADU63146.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 D + L RN + S F +++++ Sbjct: 162 DGAALAETDIDIYRFQNPAGLTAIGRNF--YRGSEASGDAVAGTPGDENFGTLAQAFLEG 219 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + +E+ LI +++Y I++K I +D MLQT + + Sbjct: 220 SNVEMVDEMVGLIVGQRAYEINSKAITTSDGMLQTAINIKR 260 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 10/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A ++ N+ N + + + Sbjct: 1 MMRSLWTAATGMVAMQTHIDTLSNNLANVNTTGFKKSRAEFEDLMYQTLQIAGTETQSGG 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + E D Sbjct: 61 RLPVGMQVGMGVRPVSVHKFFTQGDFKNTGNPLDIAIEG-------EGFFLVDMNGEDVY 113 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + E +L Sbjct: 114 TRDGSFKLDNEGRVVTAGGHVLQ 136 >gi|319764541|ref|YP_004128478.1| flagellar basal-body rod protein flgg [Alicycliphilus denitrificans BC] gi|317119102|gb|ADV01591.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans BC] Length = 260 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + + F + D + S + + ++ Sbjct: 76 ATSRHFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDAQGRMVTSGGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + ++ ++ + ++ L +N + Sbjct: 136 VANGITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFINAAGLQPVGQNM--YK 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S I + + T VN+ EEL +I+ +++Y +++K I +D+M Sbjct: 194 ESAASGPPQQGQPGTNGLGVIKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTL 475 L L Sbjct: 254 LAKL 257 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 34/177 (19%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N + R + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+++ F ++ Sbjct: 61 QLPTGLHLGLGVRTVATSRH---FTQGSLQQSSNSLDVAINGNGFFEVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + + + + I +A + Sbjct: 112 IGYTRDGSFQLDAQGRMVTSGGLPVANGITVPQGATSISISETGVVSATIAGNAQPQ 168 >gi|170722889|ref|YP_001750577.1| flagellar basal body rod protein FlgG [Pseudomonas putida W619] gi|169760892|gb|ACA74208.1| flagellar basal-body rod protein FlgG [Pseudomonas putida W619] Length = 261 Score = 71.2 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + + Q + F Sbjct: 77 TQKNFQTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNSDGQIVTANGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I D+ML Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100 P + V T N L + + + F + + + + + Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + ++ + + + T+A + + Sbjct: 121 HLNSDGQIVTANGFALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + + + A + + S + + +V Y Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240 Query: 221 TSDGTTLFE 229 + + Sbjct: 241 EMNSKVIST 249 >gi|303248239|ref|ZP_07334502.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] gi|302490377|gb|EFL50288.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] Length = 260 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 46/182 (25%), Gaps = 2/182 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + + +L + + S Sbjct: 81 FTQGDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGSFKLNQDGTIVSSGGYPLQPTFS 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + L + P+ + RN S + Sbjct: 141 VPTDTKTITITENGHLSCLDLNGDTLAETDIPLYTFINPSGMTAEGRNLYST--TQASGT 198 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + +++ Y V L +E+ LI +++Y ++K I D MLQT + Sbjct: 199 ANEVTPGDQNAGTLAQGYLEMSNVELVDEMVGLIVGQRAYEANSKAITTADGMLQTAVNV 258 Query: 479 VK 480 + Sbjct: 259 KR 260 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 7/147 (4%), Positives = 24/147 (16%), Gaps = 14/147 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 ++ A Q ++ N+ N + + + Sbjct: 1 MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETTGGN 60 Query: 57 SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + + + + D + Sbjct: 61 RIPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGSFK 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135 + + + L T + Sbjct: 121 LNQDGTIVSSGGYPLQPTFSVPTDTKT 147 >gi|163789664|ref|ZP_02184102.1| flagellar hook-associated protein K [Carnobacterium sp. AT7] gi|159875196|gb|EDP69262.1| flagellar hook-associated protein K [Carnobacterium sp. AT7] Length = 98 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 12/97 (12%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPE 48 MS L N A + NI NA+ + Y R+ Sbjct: 1 MSGLFGTLNNATKGLLVQQSALQTTSHNISNANTEGYSRQKVTMVADNPYTLGGIGQLGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85 V + + + L +S++ A Sbjct: 61 GVRIASIDRIVDPYVNNQLRNENSSLEMYSQKSDVLA 97 >gi|170755157|ref|YP_001782254.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169120369|gb|ACA44205.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 263 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 18/191 (9%), Positives = 42/191 (21%), Gaps = 24/191 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V +L + Q F + N Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + + N + A+ +I + Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPEGSQILNRIGEFSKNNINIAEDGSISVKDIDGIN 174 Query: 165 RFLSELTVVND 175 + + ++ + N Sbjct: 175 KMVGKINIYNA 185 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 8/111 (7%) Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 F N N+A + D NK + + + RN E +++ Sbjct: 152 FSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFANN 211 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 I + + V+ +E++ +I ++++ +S++ I D+M Sbjct: 212 DV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEM 254 >gi|111115606|ref|YP_710224.1| flagellar basal body rod protein FlgG [Borrelia afzelii PKo] gi|110890880|gb|ABH02048.1| flagellar basal-body rod protein [Borrelia afzelii PKo] Length = 265 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSKGMGKLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + E + + S + + ++ D E Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIRNSITISEQGIVSVKIDNSNE 168 >gi|94263287|ref|ZP_01287103.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267694|ref|ZP_01290963.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451896|gb|EAT02627.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456370|gb|EAT06494.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 260 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 14/183 (7%), Positives = 43/183 (23%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + + + + R Sbjct: 80 IFTQGSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFTRDADGFIVTQNGDRLQPEF 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + L N + S Sbjct: 140 QIPPETVSLHIGADGLIQAKDAAQEIIAEDQLTLFDFINPGGLRAEGGNL--FRATEASG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + ++ V + EEL LI ++++ +++K + D++L+ Sbjct: 198 DPREADPGTEGVGVLLQRFNEVSNVEVTEELVNLIITQRAFEMNSKSVQTADQLLEVANT 257 Query: 478 GVK 480 + Sbjct: 258 LKR 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 23/136 (16%), Gaps = 14/136 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ Q +I N+ N + + + T Sbjct: 1 MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRTQFEDLYYQELRAVGVENIDGG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V Q +I + + Sbjct: 61 QVPSGMQVGLGVKATANQKIFTQGSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFT 120 Query: 109 DSLESYSKNLSEDILG 124 + + + D L Sbjct: 121 RDADGFIVTQNGDRLQ 136 >gi|91792666|ref|YP_562317.1| flagellar basal body rod protein FlgG [Shewanella denitrificans OS217] gi|91714668|gb|ABE54594.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 262 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 62/210 (29%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISADNTKLPNGLNIGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + ++ Q + S +++ ++ ++ + Sbjct: 108 PDGTPAYTRNGQFSLDDTGQIVTPGSGYVLQPAITIPENATGITVSAGGEVSVKIPGTAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ + L +N S + S I + T V Sbjct: 168 SQVIGQITMTDFINPSGLDPLGQNLYTETG--ASGTPIQGTASLDGLGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIQSQRIYEMNSKVISAVDQML 255 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + + I N+ NA Y + + ++N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISADNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQLPDGTPAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E ++ EV Sbjct: 121 SLDDTGQIVTPGSGYVLQPAITIPENATGITVSAGGEVS 159 >gi|320173530|gb|EFW48726.1| Flagellar basal-body rod protein FlgG [Shigella dysenteriae CDC 74-1112] Length = 260 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|153940763|ref|YP_001391938.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|152936659|gb|ABS42157.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319958|gb|ADG00336.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] Length = 263 Score = 71.2 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V +L + Q F + N Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + A + N + A+ +I + Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGMN 174 Query: 165 RFLSELTVVND 175 + + ++ + N Sbjct: 175 KMVGKINIYNA 185 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + + + RN ++ + + Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGMNKMVGKINIYNAVGSDAFVSIGRNL--YIPQEGVNV 207 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 208 FTNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|291288379|ref|YP_003505195.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] gi|290885539|gb|ADD69239.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 67/193 (34%), Gaps = 2/193 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ + +V + ++ + + + + + S + ++ Sbjct: 72 SKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSLKTDADGNLVNS 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + ++ + + + ++ L +N Sbjct: 132 NGYYLEPAVTVPDDVTDIAFGEDGTISVTLAGEEEAQEIGQIELSRFINPAGLKAIGKNL 191 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 ++ S + + S+ + I+++ V++ +E+ +I +++Y I++K + Sbjct: 192 --FMPTGASGNAVAGVPSEDGYGSITQNTLEMSNVSVVDEMVNMITGQRAYEINSKAVQT 249 Query: 468 TDKMLQTLLEGVK 480 D+MLQ + + Sbjct: 250 GDEMLQIVNNLKR 262 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 11/145 (7%), Positives = 26/145 (17%), Gaps = 15/145 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 + A +I N+ N +N Y + + + Sbjct: 1 MFRTLWTAATGMTAQQTNIDTISNNLANVNNIGYKKSRAHFEDLIYQELKPAGAISAAGM 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107 Q + + + + L Sbjct: 61 THPTGIQVGLGSKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSL 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAE 132 + + N + L V + Sbjct: 121 KTDADGNLVNSNGYYLEPAVTVPDD 145 >gi|291617022|ref|YP_003519764.1| FlgG [Pantoea ananatis LMG 20103] gi|291152052|gb|ADD76636.1| FlgG [Pantoea ananatis LMG 20103] gi|327393473|dbj|BAK10895.1| flagellar basal-body rod protein FlgG [Pantoea ananatis AJ13355] Length = 260 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q +N F G Sbjct: 82 TQGNLSQTNNSKDIAINGQGFFQIQMPDGTSAYTRDGSFQVDQNGQLVTNSGFPVQPGIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ N L N + E S Sbjct: 142 IPANATSITVSRDGVVSVTQQGQTQAAQVGQLTLSTFMNNAGLDSVGENL--YKETQASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q + + Y+ T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 200 APTDSTPGQNGAGLLYQGYAETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLAKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/237 (8%), Positives = 52/237 (21%), Gaps = 37/237 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VT + L +++ Q F ++ Sbjct: 61 TLPSGLQIGTGVRPVTTERLH---TQGNLSQTNNSKDIAINGQGFFQIQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA----REVQKIRADADK 154 S + S + + A + + + +A Sbjct: 112 SAYTRDGSFQVDQNGQLVTNSGFPVQPGITIPANATSITVSRDGVVSVTQQGQTQAAQVG 171 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 ++ L L + + + D+ + +L Q +E ++ Sbjct: 172 QLTLSTFMNNAGLDSVGENLYKETQASGAPTDSTPGQNGAGLLYQGYAETSNVNVAE 228 >gi|283850807|ref|ZP_06368093.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] gi|283573730|gb|EFC21704.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] Length = 260 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 2/102 (1%) Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + P+ + L RN S +++ + Sbjct: 161 QNGAAQGETDIPLYTFINSPGLTAEGRNLYST--TQASGDAQEVTPGDQNAGTLAQGFLE 218 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V L +E+ LI +++Y ++K I D MLQT + + Sbjct: 219 MSNVELVDEMVGLIVGQRAYEANSKAITTADGMLQTAVNVKR 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 9/145 (6%), Positives = 24/145 (16%), Gaps = 14/145 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56 ++ A Q ++ N+ N + + + V Sbjct: 1 MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTQQVAGTETVGGN 60 Query: 57 SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + + + E D + Sbjct: 61 RLPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGEGFFKVDVNGRDLYTRAGSFK 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEE 133 + + + L A Sbjct: 121 LNQDGTIVTANGYPLQPAFSVPAGT 145 >gi|37681979|gb|AAQ97867.1| FlgG [Photorhabdus luminescens] Length = 150 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 2/152 (1%) Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + S N Q + FL ++ + + S + Sbjct: 1 TSAYTRDGSFQEDQNGQLTTANGFLIFPTITIPDNATDLTISSDGIVSVKVQGQSVPQQV 60 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + + L N ++E + S + + Y T VN+ E Sbjct: 61 GQFTLTTFINDSGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYVETSNVNIAE 118 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EL +I+ +++Y +++K + +D+MLQ L + Sbjct: 119 ELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 150 >gi|218678738|ref|ZP_03526635.1| flagellar hook-associated protein FlgK [Rhizobium etli CIAT 894] Length = 168 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN QQ + I NI N N +YVRR+ T S VV+ + Sbjct: 1 MSLTSALNSAQSIFNNTGQQSSVISTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 ++ Q+ L + + + + Y SP+ Y+S + +L++Y+ + S Sbjct: 61 TALLAQYLQSNAKDSAQQTLVTGLESLKSLMGGNDYETSPSTYLSAFQQALQTYATSPSS 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 ++ + A+++ + NT++ VQ IRADAD +I ++S+L L Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRADADADIATQVSSLNTLL 167 >gi|119469952|ref|ZP_01612757.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446662|gb|EAW27935.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 63/208 (30%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ ++ + + + F D Sbjct: 50 NQPGGRSSQDTEMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384 + + T + + ++ S ++ ++ ++ + N Sbjct: 110 GNIAYSRNGQFTTDGDGRIVTSGSGYVVQPEMNVPDDAQSITISQDGEVSVRISGQADNV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N E S + I + T VN+ Sbjct: 170 VIGQLTISDFINPSGLEPVGQNLYT--ETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+M+ Sbjct: 228 TEELVNLIETQRIYEMNSKVISAVDEMM 255 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 12/165 (7%), Positives = 36/165 (21%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + I N+ NA Y + + Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 46 -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + KN + +++ F + + N Sbjct: 61 EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQ------PDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + + ++ ++ + EV Sbjct: 115 SRNGQFTTDGDGRIVTSGSGYVVQPEMNVPDDAQSITISQDGEVS 159 >gi|269103188|ref|ZP_06155885.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163086|gb|EEZ41582.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ + ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQATQDSTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQILLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384 + + TI Q + S + + ++ N+ Sbjct: 110 GNMGYTRNGQFTINAEGQLVTTGSGYVVQPEIVVPEDAVGITVGTDGEVSARIRGQQENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 L +N +L S I +S T VN+ Sbjct: 170 VLGQLTTVDFINPGGLEPIGQNL--FLPTGASGDAQEGTPGLDGLGTIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 53/235 (22%), Gaps = 32/235 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + ++ + ++I N+ NA + + + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQATQDS 60 Query: 45 ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + K ++A+ F + N Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQIL------LPDGNMGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + E + + I D V + ++ + + Sbjct: 115 TRNGQFTINAEGQLVTTGSGYVVQPEIVVPEDAVGITVGTDGEVSARIRGQQENQVLGQL 174 Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + E N + + + LD + Q + E ++ Sbjct: 175 TTVDFINPGGLEPIGQNLFLPTGASGDAQEGTPGLDGLGTIRQSMLETSNVNVTE 229 >gi|239995123|ref|ZP_04715647.1| flagellar basal body rod protein FlgG [Alteromonas macleodii ATCC 27126] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 3/213 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ A ++ ++ +++ + A + + D Sbjct: 50 NQPGGRSSADTELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q ++ + V+ ++ ++ + + Sbjct: 110 GTIAYSRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + + +IS+ T VN+ Sbjct: 170 VLGQLNISDFVNPTGLQPTGQNL--YVETASSGAPIQGIPGLQGLGYISQGTLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EEL LI+ ++ Y +++K+I D+ML +++ Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 38/165 (23%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49 + ++ + A A + N+ NA + + + P Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + K L +A+ + + + + Sbjct: 61 ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + + E+ Q + E+ Sbjct: 115 SRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159 >gi|167623363|ref|YP_001673657.1| flagellar basal body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167353385|gb|ABZ75998.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + G + ++ + + ++ + + + F + D Sbjct: 50 SQAGGISASNTKLPNGLSIGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q + S +++ ++ ++ ++ N+ Sbjct: 110 GTAAYTRNGQFSLDETGQIVTPGSGYVIQPAITIPEGATSITVSAEGEVSVKTPGNAENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L +N +LE S + S I + T VN+ Sbjct: 170 VVGQLAIADFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 10/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENK 60 + ++ + + I N+ NA + + + + N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVSQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLSIGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E ++ EV Sbjct: 121 SLDETGQIVTPGSGYVIQPAITIPEGATSITVSAEGEVS 159 >gi|311694363|gb|ADP97236.1| flagellar basal-body rod protein FlgG [marine bacterium HP15] Length = 262 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 2/181 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A+ + + F+ + D + + + + + Sbjct: 77 TAKQFSQGNLQITEQPLDMAINGRGFLQVQLPDGQIAYTRDGQFQLNADGDVVNPDGYPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + N+ + N + L N + Sbjct: 137 EPAINVPENATNITIGKDGTVTAVTDDQAAPVNLGQITLVDFINPQGLQAIGNNL--FKA 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N S I + + V + EEL +I +++Y +++K++ TD+ML Sbjct: 195 TNASGDPAEGEPGLAGLGSIEQGSVESSNVEVVEELVNMITTQRAYEMNSKVVSTTDQML 254 Query: 473 Q 473 Q Sbjct: 255 Q 255 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 35/213 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + ++I N+ N + + R + Sbjct: 1 MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQINRQPGGLTTQNS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV K L + + F ++ Sbjct: 61 ELPSGLQLGTGVRVVG---TAKQFSQGNLQITEQPLDMAINGRGFLQVQ------LPDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + N L V +NA + + + V +A Sbjct: 112 IAYTRDGQFQLNADGDVVNPDGYPLEPAINVPENATNITIGKDGTVTAVTDDQAAPVNLG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 ++ + + + N+ K AS A Sbjct: 172 QITLVDFINPQGLQAIGNNLFKATNASGDPAEG 204 >gi|322806967|emb|CBZ04537.1| flagellar basal-body rod protein FlgG [Clostridium botulinum H04402 065] Length = 263 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V +L + Q F + N Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MADGNYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + A + N + A+ +I + Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGIN 174 Query: 165 RFLSELTVVND 175 + + ++ + N Sbjct: 175 KMVGKINIYNA 185 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + + + RN ++ + + Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNL--YIPQEGVNV 207 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 208 FTNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|329901232|ref|ZP_08272757.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] gi|327549164|gb|EGF33756.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] Length = 260 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ ++ + F + D + S I Q ++ F+ Sbjct: 76 ATERIFTQGNLQQTSNDKDVAIQGQGFFQVLLPDGTTAYTRDGSFQIDSQGQMVTSSGFV 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ I + +A L N ++ Sbjct: 136 IQPAITIPAAAQSLTVGRDGTISITLQGTAAATQIGALQLATFINPAGLESKGENL--YV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + +S+ Y T V++ EEL +I+ +++Y I++K I +D+M Sbjct: 194 ETGASGTANTNTPGTNGAGILSQGYVETSNVSVVEELVNMIQTQRAYEINSKAISTSDQM 253 Query: 472 LQTL 475 L L Sbjct: 254 LAKL 257 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/214 (8%), Positives = 43/214 (20%), Gaps = 36/214 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLEAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+ Q F + Sbjct: 61 QLPSGLQLGTGVRPVATERI---FTQGNLQQTSNDKDVAIQGQGFFQVL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + + S ++ + A V T + +Q A Sbjct: 112 TAYTRDGSFQIDSQGQMVTSSGFVIQPAITIPAAAQSLTVGRDGTISITLQGTAAATQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + E N ++ + + + Sbjct: 172 ALQLATFINPAGLESKGENLYVETGASGTANTNT 205 >gi|290474974|ref|YP_003467858.1| flagellar basal body rod cell-distal protein [Xenorhabdus bovienii SS-2004] gi|289174291|emb|CBJ81081.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 260 Score = 70.8 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + S N Q + F + Sbjct: 82 SQGNLAQTNNSNDVAIKGQGFFQIQMPDGTTGYTRDGSFQKDQNGQLVTAGGFQVVPAII 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + IN + + + L N +LE N S Sbjct: 142 IPDNATKMSIARDGIVSINVQGQNAPQQVGQLTLTTFINESGLESIGENL--YLETNSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + Y T VN+ EEL +I+V+++Y I++K + +D+MLQ L + Sbjct: 200 VPVENAPGINGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 11/155 (7%), Positives = 29/155 (18%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTERQPGAMSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F ++ Sbjct: 61 NLPSGLQIGTGVRPVATERLHSQ---GNLAQTNNSNDVAIKGQGFFQIQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + +I Sbjct: 112 TGYTRDGSFQKDQNGQLVTAGGFQVVPAIIIPDNA 146 >gi|209884509|ref|YP_002288366.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] gi|209872705|gb|ACI92501.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] Length = 602 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/343 (9%), Positives = 91/343 (26%), Gaps = 16/343 (4%) Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 + ++ +I + + + V + + Sbjct: 273 TNDATNIPVDATIGDLLAKIDAISGNTTNPSTVAGGVVTLNSGLAGNLTVSSNNSSAFGA 332 Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 + ++ + T G+ + ++ +Y ++ + + Sbjct: 333 LGFTGTVTAVRGGGGTAGTGTVIGSDSKNFIDESVSGGATTAYDISGAPVSLQF-RWAKT 391 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + L D Q + + + A S + I Sbjct: 392 DSASLGAGHNDVWNLFYQTDPNATGTQVAWQNVGVNFTFGPNGQMNPAVPSVTLANATIG 451 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 L + + + N + +++ ++ +Y + Sbjct: 452 --GIALGDVTVNFGASGLTQFADANGNVQVNQIQNDGFPAGQLQTVSISNNGRVVGNYSN 509 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN---HISESYS 437 N + +A N L + Q +F I S Sbjct: 510 GRNIDLAAITLATFNGPNFLKR----------VDGGAFEVTDESGQALFGKGGTIVGSSL 559 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +E + LI +Q+Y+ + K+I +++M+Q LL ++ Sbjct: 560 EGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 602 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/453 (9%), Positives = 103/453 (22%), Gaps = 22/453 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56 M + + + S +I NI N+ + R DT + N + Sbjct: 1 MGIFGALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGSNSQLAGSV 60 Query: 57 SENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLRD 109 + + A + + F A+++ S D+ Sbjct: 61 RSSSRETNTVQGDVQAAAVSTYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID V + Q +R D + + + Sbjct: 121 DKNGYLVNGAGYYLEGIPIDPTTGNV-----TGSVPQVLRFSNDFLPAQPTTAVTYRANL 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + + D L + + +N + T + Sbjct: 176 ASYPLTTKHDTSIPGSELINVGDFTANPLIIGTPPQPYTNGAKNGTTQNSKLTTPTPITT 235 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + N I ++G ++ G A D+ + + Sbjct: 236 STTLSGLANTDSLGVDFVAGNTITVNGTTITFTV----AGGTNDATNIPVDATIGDLLAK 291 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFI--ADGIKDLDNKLCQGISETICVNPQYRSN 347 +D ++ + + + + G ++ G + Sbjct: 292 IDAISGNTTNPSTVAGGVVTLNSGLAGNLTVSSNNSSAFGALGFTGTVTAVRGGGGTAGT 351 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + Y F G N + + Sbjct: 352 GTVIGSDSKNFIDESVSGGATTAYDISGAPVSLQFRWAKTDSASLGAGHNDVWNLFYQTD 411 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + ++ + + Sbjct: 412 PNATGTQVAWQNVGVNFTFGPNGQMNPAVPSVT 444 >gi|21672606|ref|NP_660673.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008454|sp|Q8K9K4|FLGG_BUCAP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|21623237|gb|AAM67884.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 260 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 2/166 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + S + N Q +N + N+ Sbjct: 94 DVAINGPGFFQVQLPDGNIAYTRDGSFQLDQNGQLVTNSGYPIIPEINIPPNSINMNIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + + L N + E S + Sbjct: 154 DGIVSVTIQGQTQPISIGQLNLINFVNHSGLESLGENL--YQETQASGNPIDTTPGLNGT 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKSINTSDQMLQKL 257 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/183 (7%), Positives = 36/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + I N+ N + R + T Sbjct: 1 MIPSLWISKTGLDAQQINMNVISNNLANVSTNGFKRSRAVFEDLMYQTMRQAGTNSSIDT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L S+ F ++ N Sbjct: 61 TLPSGLQLGTGVRPVSTEKIYSQGNLSKTDSSKDVAINGPGFFQVQ------LPDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S + + + N I+ +++ Sbjct: 115 TRDGSFQLDQNGQLVTNSGYPIIPEINIPPNSINMNIGRDGIVSVTIQGQTQPISIGQLN 174 Query: 162 NLR 164 + Sbjct: 175 LIN 177 >gi|50403744|sp|P50611|FLGE_HELMU RecName: Full=Flagellar hook protein flgE Length = 454 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 28/380 (7%), Positives = 82/380 (21%), Gaps = 21/380 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + NI N + + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISK 106 N+ + + + + Sbjct: 61 GGQNDVSVGLGVNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGE 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ++ + D+ + R D K I+ + Sbjct: 121 FLFDANGNLVTNGGYVVQGWMKDDLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMM 175 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + N +++ + + + + + GI+ I +++++ D Sbjct: 176 MPARASSNISLRANLNAGRHVDQVANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGA 235 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 LF I + V+ +++ + D S + +I S + Sbjct: 236 LFTQSGDAIGLTENQGIWVSYKTSEMVNDIEATSGESSIEINHTRISFTNDSAASGISSV 295 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + E G + + + ++ + + S Sbjct: 296 VAAQNAINALKQKTGVEAFVDNGMLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDS 355 Query: 347 NPSFLRDGGSVSKKFLWNVK 366 + + R + S Sbjct: 356 DITAFRYRYTTSASPDSGTG 375 >gi|54307272|ref|YP_128292.1| putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911692|emb|CAG18490.1| Putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 261 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 51/176 (28%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + A + + F + D + + + Sbjct: 81 MKTGAYQNTEQATDLAVLGSGFFQIELADGNTGYTRNGQFHRNSEGMMVTAAGLPLMPNI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N I+ D + +A L N + E S Sbjct: 141 EIPENATNFSVGTDGMVTISTADDPEPQEIGQITLANFANAAGLQSLGGNL--FKETGAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + IS+ VN+ EE+ +I +++Y ++ K++ D+ML Sbjct: 199 GAPIEGVGGEDGLGQISQFSLEGSNVNVVEEMVNMITTQRAYEMNAKVVSSADQML 254 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 18/186 (9%), Positives = 39/186 (20%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ Q I N+ N + + + + Sbjct: 1 MHAALWISKTGLAAQDTQMQVISNNLANVNTVGFKQDRAVFEDLFYQMKKQPGAMTDQQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + M A L F ++ N Sbjct: 61 ENPGGLQLGNGVRVVGTQKL---MKTGAYQNTEQATDLAVLGSGFFQIE------LADGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + E + L + + T D + + Sbjct: 112 TGYTRNGQFHRNSEGMMVTAAGLPLMPNIEIPENATNFSVGTDGMVTISTADDPEPQEIG 171 Query: 159 EISNLR 164 +I+ Sbjct: 172 QITLAN 177 >gi|319944133|ref|ZP_08018411.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] gi|319742627|gb|EFV95036.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] Length = 260 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + + F + D + S Q ++ Sbjct: 81 FTQGNLQQTSNSFDLAISGHGFFQLQMPDGTTGYTRDGSFHPDAQGQLVNSNGMPLSPPI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +V + +A L +N + E + S Sbjct: 141 TIPPGTRDVTVGNDGTVSVTIAGQEGVTQIGQIQLATFQNAAGLDPQGQNV--FKESDAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + Y T VN+ EEL +I+ +++Y I++K I +D+ML Sbjct: 199 GTPTAATPGVNGAGLLQQGYLETSNVNVVEELVSMIQTQRAYEINSKAIQTSDQML 254 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 27/145 (18%), Gaps = 33/145 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N Y R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISHNLANVSTNGYKRSQAVFEDLIYQNMRQVGAQSSADT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S++ F L+ Sbjct: 61 QLPTGLQLGTGVRPVATSRL---FTQGNLQQTSNSFDLAISGHGFFQLQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDIL 123 + + N + L Sbjct: 112 TGYTRDGSFHPDAQGQLVNSNGMPL 136 >gi|168182721|ref|ZP_02617385.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796077|ref|YP_002863629.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674133|gb|EDT86094.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229261217|gb|ACQ52250.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 263 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V +L + Q F + N Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MSDGNYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + A + N + A+ +I + Sbjct: 115 GNFVIDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGIN 174 Query: 165 RFLSELTVVND 175 + + ++ + N Sbjct: 175 KMVGKINIYNA 185 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + + + RN E + Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFA 209 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 210 NNDV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|220932494|ref|YP_002509402.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] gi|219993804|gb|ACL70407.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] Length = 262 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++ + + + + +A + L RN + S + Sbjct: 146 ASSISITSDGTIAVEINGSNQPQQIGQIELARFSNPAGLNSIGRNL--FKPTVASGDPIV 203 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I++ + V + EE+ +I +++Y I++K I D+ML+T + + Sbjct: 204 GTPGSPGFGTIAQGFLEMSNVKVVEEMVNMIAAQRAYEINSKAIQAADEMLRTASQLRR 262 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 4/44 (9%), Positives = 12/44 (27%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A + +I N+ N + + + Sbjct: 1 MIGALWTAATGMDAQQTNIDTISNNLANVNTTGFKKTRVNFQDL 44 >gi|317121026|ref|YP_004101029.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591006|gb|ADU50302.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 289 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + Q + + V+L E++ L+ +++Y ++ + ++ D+M+ L+ Sbjct: 226 GAVAALPPGQGGAGRVRQGMLEQANVDLAVEMTRLLAAQRAYQLNARAVLTGDEMMG-LI 284 Query: 477 EGVK 480 ++ Sbjct: 285 NRLR 288 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/110 (8%), Positives = 16/110 (14%), Gaps = 23/110 (20%) Query: 19 QQFASIVRNIENADNKNYVRRDTMTTISP---------------ENVTVVTQRSENK--- 60 +Q N+ N + + V Sbjct: 18 RQVDVTANNLANVNTPGFKASRADFADLVYAALAVPASPATAAAGGVQAGHGVRLAATPR 77 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + L + S F + E S Sbjct: 78 SWRQGPLQSTGSPWDLAIDGAGFFQVVE-----PGTGEVLLTRGGAFVLS 122 >gi|330826757|ref|YP_004390060.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] gi|329312129|gb|AEB86544.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] Length = 260 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + + F + D + S + + ++ Sbjct: 76 ATSRNFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDAQGRMVTSGGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + ++ ++ + ++ L +N + Sbjct: 136 VANGITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFINAAGLQPVGQNM--YK 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S I + + T VN+ EEL +I+ +++Y +++K I +D+M Sbjct: 194 ESAASGPPQQGQPGTNGLGVIKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTL 475 L L Sbjct: 254 LAKL 257 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 34/177 (19%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N + R + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L S+++ F ++ Sbjct: 61 QLPTGLHLGLGVRTVATSRN---FTQGSLQQSSNSLDVAINGNGFFEVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + + + + I +A + Sbjct: 112 IGYTRDGSFQLDAQGRMVTSGGLPVANGITVPQGATSISISETGVVSATIAGNAQPQ 168 >gi|289670517|ref|ZP_06491592.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 390 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 34/390 (8%), Positives = 108/390 (27%), Gaps = 5/390 (1%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + T + + + + + ++ + ++ +A+ + Sbjct: 1 TASKLTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRL 60 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNN 214 S S+ + A+ + + + +S +S + N Sbjct: 61 AVGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTTAANPNNTGSASLSASFSNMSAVDGQN 120 Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + ++ + + + + N + + ++ + + Sbjct: 121 VTLSFDGTNWKATNASTGSAVPMTGTGTASNPLVLNGVSMVVGGTPASGDKFLLQPTAGL 180 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKL 330 + ++ + + ++ + + P L ++ +D Sbjct: 181 AGSLSVAITDPSRIAAATPVKATATIANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQ 240 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 ++ + + + + ++ I D Sbjct: 241 YTIDGAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDA 300 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 A VTL + + +V+ + S + GVNL EE + Sbjct: 301 KALSGGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAAN 360 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++K++Q+Y + ++I D + Q +L V+ Sbjct: 361 MLKLQQAYQAAAQMISTADTVFQAILGAVR 390 >gi|218660072|ref|ZP_03516002.1| flagellar hook-associated protein FlgK [Rhizobium etli IE4771] Length = 231 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 14/228 (6%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + +G +++LLQIRD + P FQ QLDE+AR L+ F E++ A + + G Sbjct: 2 TTTGQGSLQSLLQIRDEIAPNFQKQLDEIARGLVSLFKEQNTAAPPAYVPGLFTWSGGTV 61 Query: 325 DLDNKLCQGISETICVN----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 D G++ TI V+ +P LRDGG + + N ++GY ++ Sbjct: 62 DTGATAVAGMASTISVSTRVITSQGGDPMRLRDGGVNATGVVLNTSGVSGYTAELDRLYT 121 Query: 381 SFNKNFIFDPVA----------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + + + FDP A GI++NV+++EYA NS+GWLE+ RS++ + + Sbjct: 122 AMSADIDFDPAAGAPVGFDATTGIDSNVSIMEYATNSLGWLEQYRSNATTAAENTSAALS 181 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E+YSN GVNL EEL+ L+ +EQSY + K++ D+ML++LL+ Sbjct: 182 RSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNAVDEMLKSLLDI 229 >gi|289804043|ref|ZP_06534672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 179 Score = 70.8 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 1 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 60 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 61 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 118 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 119 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 178 Query: 478 G 478 Sbjct: 179 L 179 >gi|15606190|ref|NP_213567.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] gi|2983377|gb|AAC06963.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] Length = 262 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + K + F + D + + + ++ + Sbjct: 76 DTYGIFTQGNLTKTDNQLDIAIQGDGFFKIVLPDGTIAYTRNGQFRLDSEGRIVNSDGYP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D +V A + + + +A L N ++ Sbjct: 136 LDPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIELAKFVNPAGLRRIGNNL--YI 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + + Y + VN+ EE+ LI +++Y + K I D+M Sbjct: 194 QTTASGEPIIDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAYEFNTKGIQAADEM 253 Query: 472 LQTLLEGVK 480 L + Sbjct: 254 LSQAANLRR 262 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 48/216 (22%), Gaps = 29/216 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + + I N+ N + Y + Sbjct: 1 MFRALWTSASGMTAQQTNLDVISHNMANVNTVGYKKMRATFQDLLYQTVEEPGAPTSPTT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + + L + + F + Sbjct: 61 RSPSGFQIGLGTYVSDTYGIFTQGNLTKTDNQLDIAIQGDGFFKIV------LPDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELE 159 + R E N L + A+ + + + +++ + ++ +E Sbjct: 115 TRNGQFRLDSEGRIVNSDGYPLDPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 ++ + N+ TAS D + Sbjct: 175 LAKFVNPAGLRRIGNNLYIQTTASGEPIIDNPGNQG 210 >gi|332284021|ref|YP_004415932.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] gi|330427974|gb|AEC19308.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] Length = 261 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 2/128 (1%) Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410 ++ ++ L G + N + L N + Sbjct: 136 IQPPINIPDNALTITIARDGMVSVTQPGATGANVEVGQLQLNTFINPTGLQSAGENL--Y 193 Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 +E + S + + + Y+ T VN+ EEL +I +++Y +++K I +D+ Sbjct: 194 VETDASGPANFAQPGLDGAGLVLQQYTETSNVNVAEELVNMITTQRAYEMNSKAIETSDQ 253 Query: 471 MLQTLLEG 478 ML L + Sbjct: 254 MLARLTQL 261 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 19/262 (7%), Positives = 50/262 (19%), Gaps = 33/262 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + + R Sbjct: 1 MIRSLWIAKTGLESQQTNMDVISNNLANVNTTGFKRSRANFEDLMYQTIRQPGAQVGAAN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ + F ++ Sbjct: 61 QLPSGLQIGTGVRTVATERIH---TQGNLKDTGNSMDIAIQGKGFLQVE------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L+ + + + +E+ Sbjct: 112 FAYTRDGSLQVDQNGQLVTAGGYPIQPPINIPDNALTITIARDGMVSVTQPGATGANVEV 171 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 L F++ + + + Q + + T N + + Sbjct: 172 GQLQLNTFINPTGLQSAGENLYVETDASGPANFAQPGLDGAGLVLQQYTETSNVNVAEEL 231 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 V +E + I Sbjct: 232 VNMITTQRAYEMNSKAIETSDQ 253 >gi|7514872|pir||S61455 flagellar hook protein flgE - Helicobacter mustelae (fragment) Length = 454 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 28/380 (7%), Positives = 82/380 (21%), Gaps = 21/380 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 +L + NI N + + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRATFVDMISQTKLIATSPHKGGL 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISK 106 N+ + + + + Sbjct: 61 GGQNDVSVGLGVNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGE 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 ++ + D+ + R D K I+ + Sbjct: 121 FLFDANGNLVTNGGYVVQGWMKDDLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMM 175 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + N +++ + + + + + GI+ I +++++ D Sbjct: 176 MPARASSNISLRANLNAGRHVDQVANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGA 235 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 LF I + V+ +++ + D S + +I S + Sbjct: 236 LFTQSGDAIGLTENQGIWVSYKTSEMVNDIEATSGESSIEINHTRISFTNDSAASGISSV 295 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + E G + + + ++ + + S Sbjct: 296 VAAQNAINALKQKTGVEAFVDNGMLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDS 355 Query: 347 NPSFLRDGGSVSKKFLWNVK 366 + + R + S Sbjct: 356 DITAFRYRYTTSASPDSGTG 375 >gi|307131607|ref|YP_003883623.1| flagellar basal-body rod protein flgG [Dickeya dadantii 3937] gi|306529136|gb|ADM99066.1| Flagellar basal-body rod protein flgG [Dickeya dadantii 3937] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S N Q ++ F N+ Sbjct: 94 DLAIKGAGFFQVLMPDGTTSYTRDGSFQQDSNGQLVTSSGFQVQPAITIPANSSNLTVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L N E S + Sbjct: 154 DGVVTVTQQGQTAPVQIGQLNLAMFINEAGLENLGENLYA--ETASSGAPTQSTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + + T VN+ EEL +I+ +++Y I++K I TD+MLQ L + Sbjct: 212 GLIYQKFVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 30/149 (20%), Gaps = 21/149 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ N I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + +H S + + Sbjct: 61 TLPSGLQLGTGVR---PVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTSYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 118 GSFQQDSNGQLVTSSGFQVQPAITIPANS 146 >gi|296534160|ref|ZP_06896654.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296265515|gb|EFH11646.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 262 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + R+ + + + + + + + S + + F Sbjct: 76 AIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQMPTGETAYTRAGSFGLSDAGMIVTADGFQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G V +V A L+ + +N + L N +L Sbjct: 136 VGAGIVIPAGARDVTINATGEVLVKIDGQAALQNVGQLQLGTFPNEGGLEAIGDNM--FL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S L + + + Y T VN+ +E++ LI +++Y +++K+I +D+M Sbjct: 194 ETPASGGVTLGNPGAAGYGQVLQGYLETSNVNVVQEITALITAQRAYEMNSKVITASDEM 253 Query: 472 LQTL 475 L TL Sbjct: 254 LSTL 257 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/275 (8%), Positives = 62/275 (22%), Gaps = 21/275 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 N A I NI N Y RR +++ Sbjct: 3 SLNIAGTGMMAQQTNVEVISNNIANMSTTAYKRRRAEFQ---------------DLLYEN 47 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYISKLRDSLESYSKNLSED 121 + S + Q +L S L + + + ++ + Sbjct: 48 LRRTGSQSSDQGTVLPSGAQLGLGVRTAAIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQM 107 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN--LRRFLSELTVVNDAIKF 179 G+T A + + A I + + L ++ Sbjct: 108 PTGETAYTRAGSFGLSDAGMIVTADGFQVGAGIVIPAGARDVTINATGEVLVKIDGQAAL 167 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + F ++ + + + G L + Sbjct: 168 QNVGQLQLGTFPNEGGLEAIGDNMFLETPASGGVTLGNPGAAGYGQVLQGYLETSNVNVV 227 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + ++ V++++ +++ Sbjct: 228 QEITALITAQRAYEMNSKVITASDEMLSTLSRMRG 262 >gi|194432508|ref|ZP_03064795.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|194419395|gb|EDX35477.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|332092914|gb|EGI97982.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 155-74] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSISIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGGRS---VATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|332140548|ref|YP_004426286.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] gi|327550570|gb|AEA97288.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] Length = 262 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 3/213 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ A ++ ++ +++ + A + + D Sbjct: 50 NQPGGRSSADTELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q ++ + V+ ++ ++ + + Sbjct: 110 GTIAYSRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + + +IS+ T VN+ Sbjct: 170 VLGQLNISDFVNPTGLQPTGQNL--FVETASSGAPIQGIPGLQGLGYISQGTLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EEL LI+ ++ Y +++K+I D+ML +++ Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 38/165 (23%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49 + ++ + A A + N+ NA + + + P Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + K L +A+ + + + + Sbjct: 61 ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + + E+ Q + E+ Sbjct: 115 SRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159 >gi|297570291|ref|YP_003691635.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] gi|296926206|gb|ADH87016.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 14/182 (7%), Positives = 44/182 (24%), Gaps = 2/182 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + + + + + R + Sbjct: 81 FTQGSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFTRDADGFIVTQNGDRLQPEFA 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ + + L N + S Sbjct: 141 IPADTVTLSVGTDGLIQAKNAAQEIIAEGQLTLHNFINPGGLRAEGGNL--FRPTEASGD 198 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I +++ V++ EEL LI ++++ +++K + D++L+ Sbjct: 199 PIESDPGTDGAGVILQNFIEVSNVDVTEELVNLIITQRAFEMNSKSVQTADQLLEVANTL 258 Query: 479 VK 480 + Sbjct: 259 KR 260 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 11/147 (7%), Positives = 24/147 (16%), Gaps = 14/147 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48 ++ Q +I N+ N + + + Sbjct: 1 MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRVQFEDLYYQEMRAVGVETVDGG 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V Q +I + Sbjct: 61 QVPSGIQVGLGVIATSTQKLFTQGSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFT 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135 + + + D L A+ V Sbjct: 121 RDADGFIVTQNGDRLQPEFAIPADTVT 147 >gi|206603525|gb|EDZ40005.1| Flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 261 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 9/144 (6%), Positives = 22/144 (15%), Gaps = 28/144 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A + I N+ N + + R+ Sbjct: 1 MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60 Query: 46 --SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V ++ + F + + Sbjct: 61 NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQI------SLPDGRTA 114 Query: 101 THYISKLRDSLESYSKNLSEDILG 124 + Sbjct: 115 YTRDGTFSIDGQGRLVTQDGLPTN 138 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 ++ L N ++E S L + + VN+ EEL Sbjct: 176 LSQFVNPAGLESRGDNL--FMETAASGQPQLSNPGTNGAGRLQSGFLEASNVNVAEELVN 233 Query: 451 LIKVEQSYNISNKLIMFTDKML 472 ++ +++Y + I ++ML Sbjct: 234 MVIGQRAYQMDATGIRTVNRML 255 >gi|253702499|ref|YP_003023688.1| hypothetical protein GM21_3913 [Geobacter sp. M21] gi|251777349|gb|ACT19930.1| protein of unknown function DUF1078 domain protein [Geobacter sp. M21] Length = 294 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 57/221 (25%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+ V I+ + L + + + N G + Sbjct: 74 STQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTDSNLYLVNPDGYQV 133 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 D + L + T + + L + Sbjct: 134 LDTAGNPIQFLDTKAAPTTDFGKVLSIDNTGLITYLATDGITQNYYSASGAVGVATTPAA 193 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + A + + + + K V I + Sbjct: 194 ATAAEKIAVVTAADTTGLKKVGGSLYQATTDAGVSTAAFSQAANKPNGVSETILSNTLEQ 253 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L E +I +++Y+ ++K I +D+M Q +L ++ Sbjct: 254 STVDLANEFVKMITTQRAYSANSKTITTSDQMTQEVLNLIR 294 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 10/172 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52 MS+ + + + I NI N + Y T+ + Sbjct: 1 MSVTSALYTGVSGLLQNGEAMNVIGNNISNVNTIGYKGARTLFSDMLSQNVGNNSQIGKG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110 V + + + SF AL + +++ + Sbjct: 61 VQMQVVQNVFSQGSTQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 Y N + T + + + + + + D I ++ Sbjct: 121 SNLYLVNPDGYQVLDTAGNPIQFLDTKAAPTTDFGKVLSIDNTGLITYLATD 172 >gi|87119674|ref|ZP_01075571.1| Flagella basal body rod protein [Marinomonas sp. MED121] gi|86165150|gb|EAQ66418.1| Flagella basal body rod protein [Marinomonas sp. MED121] Length = 261 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 2/186 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + F + D + + + ++ FL Sbjct: 76 ATQKDFSEGDYNVTDRDLDVAIQGQGFFQILMPDGNMGYTRDGQFQLNSEGDLVTSSGFL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + +V I S ++ +AG L +N ++ Sbjct: 136 VEPQVTIPQDAMSVTIGDDGTVSIVRQGASESEGVGQLSLAGFINPEGLSSIGQNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + S + + + ++ ++ T VN EEL LI ++ Y +++K++ D M Sbjct: 194 ETSASGAPIIDVPGTSALGNVRQNMVETSNVNSVEELVSLITAQRGYEMNSKVVSAADGM 253 Query: 472 LQTLLE 477 + +++ Sbjct: 254 MSFVIQ 259 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 36/165 (21%), Gaps = 33/165 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + +Q + I N+ N + + + Sbjct: 1 MHPALWVSKTGLSAMDKQLSVISNNLANVSTTGFKKDRAVFEDLLYHTVQQPGGLQSQNT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + K+ + + + Q F + N Sbjct: 61 QLPSGLQMGAGVRVSATQ---KDFSEGDYNVTDRDLDVAIQGQGFFQIL------MPDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + + E S ++ V + + Sbjct: 112 MGYTRDGQFQLNSEGDLVTSSGFLVEPQVTIPQDAMSVTIGDDGT 156 >gi|310764858|gb|ADP09808.1| Flagellar basal-body rod protein, FlgG [Erwinia sp. Ejp617] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 74/253 (29%), Gaps = 6/253 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N + +++ S V + + +A Q Sbjct: 11 GLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPTGMQLGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYR 345 + +A + + + + ++ D + Sbjct: 71 GVATVATQRMHTQGSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVT 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + L+ +V G + + +A + L Sbjct: 131 AEGNPLQPDITVPADAQKLTVGEDGIVTATVPGQAAP-QQIGQLTLANFINDAGLESLGG 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N ++E S + + + Y T VN+ EEL +I+V+++Y I++K + Sbjct: 190 NL--YVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAV 247 Query: 466 MFTDKMLQTLLEG 478 +D+MLQ L + Sbjct: 248 SASDQMLQRLAQL 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/245 (7%), Positives = 51/245 (20%), Gaps = 37/245 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + L + F ++ Sbjct: 61 TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + L + A+ + A + Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPLQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171 Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 +++ L L + + ++A +D L + E ++ Sbjct: 172 QLTLANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231 Query: 215 NDMVV 219 + V Sbjct: 232 TMIQV 236 >gi|289679025|ref|ZP_06499915.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 137 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 2/136 (1%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 Q+ + S + L + + K+ +A L Sbjct: 3 QHNATSSRSAAYVDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP 62 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 R+ W S + + I V L +EL LI+ + +Y ++ Sbjct: 63 --RSDTRWTATADSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANS 120 Query: 463 KLIMFTDKMLQTLLEG 478 K I ++QTL++ Sbjct: 121 KAISTEVTLMQTLIQS 136 >gi|332533173|ref|ZP_08409042.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] gi|332037455|gb|EGI73909.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] Length = 262 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 63/208 (30%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ ++ + + + F D Sbjct: 50 NQPGGRSSQDTEMPSGLMLGAGAKVVANQKEFTQGNMLTTENSLDWMISGEGFFEVLQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384 + + T + + ++ + ++ ++ ++ + N Sbjct: 110 GNIAYSRNGQFTTDGDGRIVTSGAGYVIQPEMNVPDDAQSITVSQDGEVSVRVAGQADNV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N E S + I + T VN+ Sbjct: 170 VIGQLTISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVEGLGSIIQGSLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+M+ Sbjct: 228 TEELVNLIETQRIYEMNSKVISAVDEMM 255 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/165 (6%), Positives = 36/165 (21%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + I N+ NA Y + + Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 46 -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + K + +++ + F + + N Sbjct: 61 EMPSGLMLGAGAKVVANQKEFTQGNMLTTENSLDWMISGEGFFEVLQ------PDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + + ++ ++ + EV Sbjct: 115 SRNGQFTTDGDGRIVTSGAGYVIQPEMNVPDDAQSITVSQDGEVS 159 >gi|308273544|emb|CBX30146.1| Flagellar basal-body rod protein flgG [uncultured Desulfobacterium sp.] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 2/116 (1%) Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 ++ + + L N + S Sbjct: 147 TISIDKSGTVTAFGPSGQGTVVGVIELHSFTNPAGLFSMGHNLYRK--TDASGDAIAAAP 204 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I++ + V++ EE+ +I +++Y +S+K I D MLQ + Sbjct: 205 GSDGMGTIAQGFIEMSNVDVVEEMVAMIMAQRAYEVSSKSIQTADNMLQMANNIKR 260 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 7/155 (4%), Positives = 31/155 (20%), Gaps = 14/155 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60 +L A + + I N+ N + + + + + Sbjct: 1 MLRGMWSAASGMDAQKMMIDVISNNLANVNTVGFKKSRPDFQDLMYQTMSQGGSTTTSGD 60 Query: 61 NM------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + + + + + + Sbjct: 61 QIPGGIQVGMGTMPVSVQKMFMQGDFKETKNELDLSIEGKGFFKVISNDEEVYTRAGNFK 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + + L + ++ + + + S Sbjct: 121 MDKDGNICTPNGEKLQPAMTIPSDTMTISIDKSGT 155 >gi|15639944|ref|NP_219397.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum str. Nichols] gi|189026183|ref|YP_001933955.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum SS14] gi|3323281|gb|AAC65915.1| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018758|gb|ACD71376.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060315|gb|ADD73050.1| flagellar basal-body rod protein FlgG [Treponema pallidum subsp. pallidum str. Chicago] Length = 264 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 2/87 (2%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L N S F + + V+ E+ +I Sbjct: 180 FANNAGLAAEGGNVFTQ--TPASGQPIPGRPGFEGFGKVEHKFLEMSNVSTVSEMVNMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y ++K I +D ML T + + Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVALKR 264 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 29/154 (18%), Gaps = 33/154 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N ++ N+ N + + R+ Sbjct: 1 MVRSLWTAATGMNGQQANIDTVANNLANVNTSGFKRQRAEFEDLLYQTIRTAGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + L + + F + + + Sbjct: 61 LTPVGVRMGHGVKLAATQRL---FEQGSLQHTGVSGDVAIAGEGFFRVLQ------YDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 + E + L +I Sbjct: 112 YAYTRDGSFKVDAERQLVTSNGLRLVPEIIFPEN 145 >gi|50120641|ref|YP_049808.1| flagellar basal body rod protein FlgG [Pectobacterium atrosepticum SCRI1043] gi|49611167|emb|CAG74613.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + + N Q ++ + + Sbjct: 94 DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + L N +LE S + + Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNETNPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ N I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + ++ Q F ++ Sbjct: 61 MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + S + + A + + +VQ A Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N ++ ++ + Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202 >gi|227328340|ref|ZP_03832364.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688970|ref|YP_003018160.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755548|gb|ACT13624.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + + N Q ++ + + Sbjct: 94 DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + L N +LE S + + Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNETNPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ N I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + ++ Q F ++ Sbjct: 61 MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + S + + A + + +VQ A Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N ++ ++ + Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202 >gi|83312594|ref|YP_422858.1| flagellar basal body rod protein FlgG [Magnetospirillum magneticum AMB-1] gi|82947435|dbj|BAE52299.1| Flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] Length = 261 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 2/173 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + + + + S + ++ + V Sbjct: 91 NTLDMAIQGKGYFQIKLPSGETAYTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ ++ +A + L N ++E S + + Sbjct: 151 VDSTGQVIVKQDGQVQSQIKGQLTLATFANDAGLEARGGNL--FMETPASGQPVVQTPGK 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F I + + T VN+ E++ LI +++Y +++K+I +D+ML T+ + Sbjct: 209 PGFGTILQGFLETSNVNVVAEVTNLIGAQRAYEMNSKVIQASDEMLSTINQMK 261 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 34/181 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 N A I NI N + + RR Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGTIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + + + Sbjct: 63 PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDMAIQGKGYFQI------KLPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S E + V ++ V +++ + + K +I+ ++ Sbjct: 114 YTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQL 173 Query: 161 S 161 + Sbjct: 174 T 174 >gi|224534580|ref|ZP_03675156.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] gi|224514257|gb|EEF84575.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] Length = 265 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFVNPAGLNAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + +I N+ N + + + TQ Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89 + L + +G + + + + E Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83 >gi|197122909|ref|YP_002134860.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|220917701|ref|YP_002493005.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] gi|196172758|gb|ACG73731.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|219955555|gb|ACL65939.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L N + L+ S + +++ + V EE+ +I Sbjct: 182 TFPNPGGLEAAGGNLL--LQTAASGEAVDARPGEQGAGTLAQGFLEGANVKAVEEMIDMI 239 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEG 478 +++Y ++++++ D+MLQ L Sbjct: 240 ATQRAYELNSRVVQTADQMLQRLTSL 265 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 25/152 (16%), Gaps = 33/152 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I N+ N + R+ Sbjct: 9 SLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETIHGAEAPDPRGGTAP 68 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + L +A+ F ++ + Sbjct: 69 AALQVGLGVRTGSTVRN---FGQGELLTTGNALDLAIEGDGFFRVQ------RPDGSLAY 119 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 R +++ + E Sbjct: 120 TRAGNFRVDAAGRLVTARGEVVDPEITFPPET 151 >gi|146311248|ref|YP_001176322.1| flagellar basal body rod protein FlgG [Enterobacter sp. 638] gi|145318124|gb|ABP60271.1| flagellar basal-body rod protein FlgG [Enterobacter sp. 638] Length = 260 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANSLSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGSGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSL 147 >gi|86157777|ref|YP_464562.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] gi|85774288|gb|ABC81125.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 70.4 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L N + L+ S + +++ + V EE+ +I Sbjct: 182 TFPNPGGLEAAGGNLL--LQTAASGEAVDARPGEQGAGTLAQGFLEGANVKAVEEMIDMI 239 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEG 478 +++Y ++++++ D+MLQ L Sbjct: 240 ATQRAYELNSRVVQTADQMLQRLTSL 265 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 25/152 (16%), Gaps = 33/152 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I N+ N + R+ Sbjct: 9 SLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETVRGAEAPDPRGGTAP 68 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + L +A+ F ++ + Sbjct: 69 APLQVGLGVRTGSTVRN---FGQGELLTTGNALDLAVEGDGFFRVQ------RPDGSLAY 119 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 R +++ + E Sbjct: 120 TRAGNFRVDAAGRLVTARGEVVDPEITFPPET 151 >gi|83594175|ref|YP_427927.1| flagellar basal body rod protein FlgG [Rhodospirillum rubrum ATCC 11170] gi|83577089|gb|ABC23640.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 261 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 4/211 (1%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + QL + + ++ N L I + Sbjct: 51 AGSNSSDTGTIVPTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP-DLINHYCDSFNKNFIFDPV 391 + T Q N + G N + + Sbjct: 111 ETAYTRDGAFQLSPNGEIVTHDGYRVTGLGAIPTNAESITINPTGEVLYKIDGQTALVNA 170 Query: 392 AGINTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 I T + + N+IG E S + + + V F I + Y + VN+ E+ Sbjct: 171 GQIQTAIFPNDAGLNAIGDNYLTETAGSGAPTVGVPGSVGFGTILQGYLESSNVNVVSEI 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + LI +++Y +++K+I +D+ML T+ Sbjct: 231 TELISAQRAYEMNSKVITTSDEMLSTISRMK 261 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 3/204 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 N I NI N + Y RR +R+ + + Sbjct: 3 ALNIGATGMLAQQTNVEVISNNIANMNTTAYTRRRAEFHDLLYQ---NLRRAGSNSSDTG 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + +G + + E S N K ++ S + G Sbjct: 60 TIVPTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSGETAYTRDGA 119 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + E+V + + I +A+ + + T + +A + +TA Sbjct: 120 FQLSPNGEIVTHDGYRVTGLGAIPTNAESITINPTGEVLYKIDGQTALVNAGQIQTAIFP 179 Query: 186 DAHDFLDQRDVLLQKISEIIGIST 209 + D L + + + Sbjct: 180 NDAGLNAIGDNYLTETAGSGAPTV 203 >gi|255322391|ref|ZP_05363537.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] gi|255300764|gb|EET80035.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] Length = 262 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 58/216 (26%), Gaps = 2/216 (0%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 A + + + + ++ + ++ + F + Sbjct: 49 MEYAGTATSATTKSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLP 108 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + + + ++ ++ V + ++ Sbjct: 109 DGTTAYTRNGAFKLDSEGTIVNSDGYVLQPQMTIPADATQVSVGTDGTVSVLQPGNTEMT 168 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L N +L S + I + + V L Sbjct: 169 QVGRIELANFINPAGLHSMGDNL--YLPTGSSGEVVVGTAGLDGLGTIRQGFVEMSNVQL 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE++ LI +++Y ++K I +D ML + + Sbjct: 227 VEEMTDLITGQRAYEANSKAITTSDDMLSIVNSLKR 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 35/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y + Sbjct: 1 MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K S+ + F ++ + Sbjct: 61 KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + E N +L + A+ + T + + I Sbjct: 115 TRNGAFKLDSEGTIVNSDGYVLQPQMTIPADATQVSVGTDGTVSVLQPGNTEMTQVGRIE 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|268680164|ref|YP_003304595.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] gi|268618195|gb|ACZ12560.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] Length = 262 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 23/254 (9%), Positives = 63/254 (24%), Gaps = 4/254 (1%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + ++ + + + Sbjct: 11 GMIAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATSTSPTGIEVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A + + + I+ D + + ++ + Sbjct: 71 GVRPTAIAKQFTQGNFKETGNSLDVAITGNGFFQIQLPDGTTGYTRNGSFKLDSEGSVVN 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARN 406 S + G +++ +A L N Sbjct: 131 SDGYRLLPELTIPEDATQITIGVNGVVSVLQAGQTETNEIGQIELANFINPAGLHSLGDN 190 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 ++ + S + + + V L EE++ LI +++Y ++K I Sbjct: 191 --NYINTSASGDPIVSEPGLNGLGQTRQQFVEMSNVQLVEEMTDLITGQRAYEANSKAIT 248 Query: 467 FTDKMLQTLLEGVK 480 +D+MLQT+ + Sbjct: 249 TSDEMLQTVNALKQ 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 53/207 (25%), Gaps = 29/207 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 ++ A Q + NI N + Y ++ Sbjct: 1 MIRSLYTAATGMIAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATS 60 Query: 49 ----NVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V K +++ F ++ + Sbjct: 61 TSPTGIEVGLGVRPTAIAKQFTQGNFKETGNSLDVAITGNGFFQIQ------LPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + E N L T+ ++A ++ N +Q + + ++ ++E Sbjct: 115 TRNGSFKLDSEGSVVNSDGYRLLPELTIPEDATQITIGVNGVVSVLQAGQTETNEIGQIE 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHD 186 ++N ++ ++ +AS Sbjct: 175 LANFINPAGLHSLGDNNYINTSASGDP 201 >gi|239834442|ref|ZP_04682770.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] gi|239822505|gb|EEQ94074.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] Length = 226 Score = 70.4 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 56/212 (26%), Gaps = 2/212 (0%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S++ + + + Q + + I + + + Sbjct: 8 STSPSGRQACPNQANQSIVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWF 67 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + + + Q + + V Sbjct: 68 QIQSPTGETLYTRAGAFNKNPDGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQD 127 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + +A L N + E S + + + I + Y Sbjct: 128 QINQVDLGQLTLANFTNEAGLEPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEA 185 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 V+ +E++ LI +++Y +++K+I D+M Sbjct: 186 SNVDPVKEITDLITAQRAYEMNSKVIQAADEM 217 >gi|310816831|ref|YP_003964795.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] gi|308755566|gb|ADO43495.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] Length = 261 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 8/212 (3%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D + QL R S + + I Sbjct: 51 AGTVAATDGTILPTGIQLGMGVRTTAVSPMLGQGAVQETGGSLDVAIEGQGYFEVALPDG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKF-----LWNVKNLAGYPDLINHYCDSFNKNF- 386 I T + + + GG + ++ + ++ + F Sbjct: 111 RIGYTRDGALKLTGDGLIVTAGGLEVAPGIVIPEDAQSVAINADGEVYASFTNAVEQEFL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A L N +LE S + + + + + Y V+ Sbjct: 171 GQLNLAMFVNPRGLEAMGSNL--YLETAASGQPMVAVPGEDGLGTLRQGYLEQSTVDAVR 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E++ LI ++ Y +++K+I D+ML +++ Sbjct: 229 EVTDLIAAQRGYELNSKVISAADQMLAAMVQI 260 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 3/93 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + + A + I N+ N + Y R QR+ D Sbjct: 3 ILDIAATGMLAQQTRVEVISNNLANMNTTAYNPRRAEFADLHYQ---QVQRAGTVAATDG 59 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + +G + + + + + Sbjct: 60 TILPTGIQLGMGVRTTAVSPMLGQGAVQETGGS 92 >gi|195953027|ref|YP_002121317.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932639|gb|ACG57339.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 583 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 45/444 (10%), Positives = 95/444 (21%), Gaps = 14/444 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53 +L F A + + + + I N+ NAD Y + + NV V Sbjct: 1 MLPSFYNAISGLDAFNNYLSIISNNMSNADTIGYKAVNPIFENVVANVNVGINTLTDTLK 60 Query: 54 -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---YNNSPTHYISKLRD 109 T + L+ Q + N + Sbjct: 61 STIYGAGVIVDSTQLNWQLGNFEQTGNNTDLAIQGNGLFILQDPANAGNVFYTRNGQFTI 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLS 168 S + Y N L +D + VV Q+ D + +NL Sbjct: 121 SQQGYMVNPDGLKLLGYKVDQSGSVVGTSLQPIYIIPQQPPKATDLITYQQPTNLNSTAP 180 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 +T + + T + + D ++ + N + + Sbjct: 181 SITQAFNPLNTATFNYQNTLTTFDTLGNAIEGDTYFQKTGPNTWNYIYAENEKAAYYSNT 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 N T S + + + + S++ + I + Sbjct: 241 SGNVLYRNVAGTWQSTTISGGSLTWYNITTPPNTASSSIISTTVSPYYMISGTNSSGSMV 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + G + + +S I V S+ Sbjct: 301 TDWVVDVTTSSTTISYVVNPTKPAGGTQEWDTIGSGAANGFVPYNLSSGIGVPIYTGSST 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + N+ + S+ + + S Sbjct: 361 IYAATALLNFDPNTGNITTSSTIGVYTYPTSSSYEYFIGAQNPLVLGDGNIVGNLNSASS 420 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHI 432 + I Sbjct: 421 QSTGGLAFGQLIGAKPTTSTSAGI 444 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 42/345 (12%), Positives = 84/345 (24%), Gaps = 12/345 (3%) Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---FLDQR 194 + A Q I+ S + + S ++ Sbjct: 246 YRNVAGTWQSTTISGGSLTWYNITTPPNTASSSIISTTVSPYYMISGTNSSGSMVTDWVV 305 Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 DV + ++ T VP +++ S + Sbjct: 306 DVTTSSTTISYVVNPTKPAGGTQEWDTIGSGAANGFVPYNLSSGIGVPIYTGSSTIYAAT 365 Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 + N G+ I S F + + + + S Sbjct: 366 ALLNFDPNTGNITTSSTIGVYTYPTSSSYEYFIGAQNPLVLGDGNIVGNLNSASSQSTGG 425 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 I Q S+ + S L NV L+ + Sbjct: 426 LA--FGQLIGAKPTTSTSAGIIDNSYITQDASDFTITASQDGYSLGNLVNVYVLSSDGTV 483 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + Y + + +A L+E N + + + + I Sbjct: 484 VGVYSNGQSTPLYRVALAQFQDPNELIEKGSNLYTSIYT-----PTILLPGSA--DIIQS 536 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V++ + L+ E+SY + K++ +D +LQ L V Sbjct: 537 GMLEQSNVDIAQAYIQLVTAERSYQANAKVVTSSDNVLQATLNMV 581 >gi|149375032|ref|ZP_01892805.1| Flagellar basal body rod protein [Marinobacter algicola DG893] gi|149360921|gb|EDM49372.1| Flagellar basal body rod protein [Marinobacter algicola DG893] Length = 262 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 2/185 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 A+ E + F+ + D + + N + + Sbjct: 77 TAKQFSQGNLEVTEQPLDMAVNGRGFMQILLPDGQIAYTRDGQFQLNSNGDIVNPDGYTL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + N+ + N + L N + Sbjct: 137 EPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEITLVDFINPQGLQAIGNNL--FKA 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N S + + V + EEL +I +++Y +++K++ TD+ML Sbjct: 195 TNASGDPAEGEPGIGGLGTLEQGMVEASNVEVVEELVNMITTQRAYEMNSKVVSATDQML 254 Query: 473 QTLLE 477 Q + Sbjct: 255 QFITN 259 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/210 (10%), Positives = 50/210 (23%), Gaps = 29/210 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 + ++ + ++I N+ N + + R + + Sbjct: 1 MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQIDRQPGGLNTQNS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L + + F + Sbjct: 61 ELPSGLQLGTGVRIVGTAKQFSQGNLEVTEQPLDMAVNGRGFMQIL------LPDGQIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + N L V +NA + + + V +A E+ Sbjct: 115 TRDGQFQLNSNGDIVNPDGYTLEPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N+ K AS A Sbjct: 175 LVDFINPQGLQAIGNNLFKATNASGDPAEG 204 >gi|289679028|ref|ZP_06499918.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 159 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 2/142 (1%) Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 + Q S L+ + + N+ +L Y + ++ + Sbjct: 19 DMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFAN 78 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 L + W E S +I+ V+L EL LIK + Sbjct: 79 VQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQS 136 Query: 457 SYNISNKLIMFTDKMLQTLLEG 478 +Y + K I ++QT ++ Sbjct: 137 NYQANAKTISTQSTIMQTTIQM 158 >gi|209964690|ref|YP_002297605.1| flagellar basal body rod protein FlgG [Rhodospirillum centenum SW] gi|209958156|gb|ACI98792.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 2/172 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 A + + + D + S + + + G V + ++ Sbjct: 91 NALDLAINGQGYFQVELPDGQTAYTRAGSFQLNAEGTIVTADGYQLQPGLVVPENAVDIT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 L+ + N +A L N + LE S + Sbjct: 151 VNPNGEVLVKLDGQTQPANIGQIQLATFPNPAGLEAIGDNLL--LESPASGNIIAGNPGA 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 F + + T VN+ E++ LI +++Y +++++I +D+M+Q++ + Sbjct: 209 PGFGRVIQQALETSNVNIVSEITNLITAQRAYEMNSRVISTSDQMMQSISQM 260 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 28/165 (16%), Gaps = 16/165 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50 + I NI N + R+ + + V Sbjct: 3 SLSIGATGMLAQQLNVEVISNNIANMTTTGFKRQRAEFQDLLYQNMRRVGSTSSDAGTVV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q I + + + + Sbjct: 63 PSGVQIGAGVKTAAVYRINEQGNISVTGNALDLAINGQGYFQVELPDGQTAYTRAGSFQL 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + E L ++ V N + + K+ Sbjct: 123 NAEGTIVTADGYQLQPGLVVPENAVDITVNPNGEVLVKLDGQTQP 167 >gi|23015788|ref|ZP_00055555.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 261 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 2/173 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + + + + S + ++ + V Sbjct: 91 NTLDMAVQGKGYFQIKLPSGETAYTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + ++ ++ +A + L N ++E S + + Sbjct: 151 VDSTGQVIVKQDGQVQSQIKGQLTLATFANDAGLEARGGNL--FMETPASGQPVVQTPGK 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 F I + + T VN+ E++ LI +++Y +++K+I +D+ML T+ + Sbjct: 209 PGFGTILQGFLETSNVNVVAEVTNLIGAQRAYEMNSKVIQASDEMLSTINQMK 261 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 34/181 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 N A I NI N + + RR Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGTIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + + + Sbjct: 63 PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDMAVQGKGYFQI------KLPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S E + V ++ V +++ + + K +I+ ++ Sbjct: 114 YTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQL 173 Query: 161 S 161 + Sbjct: 174 T 174 >gi|227112523|ref|ZP_03826179.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 260 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + + N Q ++ + + Sbjct: 94 DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + L N +LE S + + Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESIGENL--YLETASSGAPNETNPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ N I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + ++ Q F ++ Sbjct: 61 MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + S + + A + + +VQ A Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N ++ ++ + Sbjct: 172 QLTLTTFINDSGLESIGENLYLETASSGAPN 202 >gi|271500068|ref|YP_003333093.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] gi|270343623|gb|ACZ76388.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] Length = 260 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + S + N Q ++ F N+ Sbjct: 94 DLAINGAGFFQVLMPDGTTQYTRDGSFQLDSNGQLVTSSGFQVQPAITIPANATNITVGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L N E S + Sbjct: 154 DGVVTVTQQGQTAPVQVGQLNLAMFINEAGLQNMGENLYA--ETASSGAPTQSTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + Y T VN+ EEL +I+ +++Y I++K I TD+MLQ L + Sbjct: 212 GLIMQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 28/155 (18%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ N I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + L +A F + Sbjct: 61 TLPSGLQLGTGVRPVSTERIH---TQGGLTETGNAKDLAINGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + S + + A Sbjct: 112 TQYTRDGSFQLDSNGQLVTSSGFQVQPAITIPANA 146 >gi|300716220|ref|YP_003741023.1| flagellar basal-body rod protein [Erwinia billingiae Eb661] gi|299062056|emb|CAX59172.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661] Length = 260 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + + + D + S N Q +N F ++ Sbjct: 94 DVAISGQGYFQVQMPDGTLAYTRDGSFQTDQNGQLVTNGGFPVQPAITVPANALSMTIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + ++ + L N + E S + Sbjct: 154 DGVVSVTQQGQTQPVQVGQLTLSTFINDAGLESKGENL--YQETQASGAPTDSTPGNNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 212 GLLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQL 260 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/156 (7%), Positives = 29/156 (18%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L+ S+ Q + ++ Sbjct: 61 TLPSGMQLGTGVRPVATERLH---TQGNLNKTDSSKDVAISGQGYFQVQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 112 LAYTRDGSFQTDQNGQLVTNGGFPVQPAITVPANAL 147 >gi|242238971|ref|YP_002987152.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] gi|242131028|gb|ACS85330.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] Length = 260 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 E+ + F + D + S + N Q + + Sbjct: 82 SQGNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSFQLDANGQLVTASGYTVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + + ++ L N + E S Sbjct: 142 IPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTLSTFINPAGLQSLGENL--YQETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q + + Y T VN+ EEL +I+V+++Y I++K + +D MLQ L + Sbjct: 200 APTQSTPGQNGAGVLYQGYVETSNVNVAEELVSMIQVQRAYEINSKAVSTSDSMLQRLTQ 259 Query: 478 G 478 Sbjct: 260 I 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/236 (7%), Positives = 49/236 (20%), Gaps = 19/236 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ A+ + I N+ N + R+ + + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSDQT 60 Query: 62 --------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + LH+ + + + + Sbjct: 61 NLPSGLQLGTGVRPVSTERLHSQGNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLR 164 + S + + T + +Q A + + Sbjct: 121 QLDANGQLVTASGYTVQPAITIPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTLSTFIN 180 Query: 165 RFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + N + + + + VL Q E ++ + + V Sbjct: 181 PAGLQSLGENLYQETQSSGAPTQSTPGQNGAGVLYQGYVETSNVNVAEELVSMIQV 236 >gi|219670133|ref|YP_002460568.1| hypothetical protein Dhaf_4123 [Desulfitobacterium hafniense DCB-2] gi|219540393|gb|ACL22132.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 329 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 32/149 (21%), Gaps = 26/149 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------------- 49 + N A + N+ N + Y + + Sbjct: 3 ILNTAATGVRAQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPVGE 62 Query: 50 ----VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + + + ++ + + F + S + Sbjct: 63 RIDVGAGVIYPTIDTDYRQGIIRETENPFDLAIDGEGFFPV------RTANGESRYTRVG 116 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + N IL + +A ++ Sbjct: 117 NFELDSQGKLVNSDGYILEVKIPADAMDL 145 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 37/336 (11%), Positives = 85/336 (25%), Gaps = 18/336 (5%) Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRD 195 +A + + A + +SN+ + VN + Sbjct: 2 RILNTAATGVRAQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPVG 61 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 + + +I + ++ T + L N + + +D Sbjct: 62 ERIDVGAGVIYPTIDTDYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFELD 121 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 N + + KI A + ++G DP P Sbjct: 122 SQGKLVNSDGYILEVKIPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVGP 181 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + G + + G +S + + L + Sbjct: 182 ID----MDELGRPLDWNGDILPTAFAVPEGAEDVQISTEGILSATIDGSRQTLGQINIIT 237 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++ A VT E + S + + Sbjct: 238 FANPEGLVRDGDNLYFAPDAAGVTGDEL-------VGTPGSQVE------ERTLGKLKTQ 284 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 VNL ++ +I+V+++Y ++ ++I D+M Sbjct: 285 SLEQSNVNLASAMTEMIQVQRAYQLNARMITNGDQM 320 >gi|237751360|ref|ZP_04581840.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] gi|229372726|gb|EEO23117.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] Length = 600 Score = 70.1 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 35/394 (8%), Positives = 102/394 (25%), Gaps = 17/394 (4%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 +N + S + + + I T EV T + + Sbjct: 214 TSNGVFNEASFFNQDFNALANRDGDMIRPNTFPKADIEVTMPDGTVQIAHYEYGDGTSSQ 273 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 + ++ + + +D + VL+ K + + + N Sbjct: 274 GKFHT-----IGQLQYLIKRDTGLDLELNRNPNGSIDPKGVLVLKNNTNTPVKVKLSGNF 328 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 ++ S + N+ V G + Sbjct: 329 FERLHLSGEMDNMGKNDYLAGTNLSVPSFTNTTEIFDEGGKKYAMHNEYFLVNAGDSEGT 388 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 ++ ++ R+LI S ++ I + + + +S Sbjct: 389 QKMPETWNVRSYIHEFSGNRMLISSEVKEGKIFFDPSGKAEADDMEIPFLGKKSVKLTLS 448 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + + + + + + + + +A Sbjct: 449 RSTNKVYK---DSGVNDTEQDGKNRGEMSNIRINNEGIISVAFTNGQTEAIGRVGLAMFA 505 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDL---------HMKSQVVFNHISESYSNTVGVNLQE 446 + L + N + S + + + Y T V++ + Sbjct: 506 NDQGLKKVGGNLFALNPSTINGEVTQLSGNPKLVWGEDSNLKQGKVLQGYVETSNVDVAD 565 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L+ LI +++ Y+++ K +D +++ + + Sbjct: 566 ALTNLILMQRGYSMNAKAFTTSDDLIKEAINLKR 599 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/481 (9%), Positives = 111/481 (23%), Gaps = 36/481 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 + A + SI NI N + Y D + N Sbjct: 1 MNDTMLNAVSGIKTHQFGLDSISNNIANVNTVGYKANDPEFKTLFSRSMDSMNASTVTNN 60 Query: 50 VTVVTQRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHYNNS 99 + N+ L S + + + + D + + Sbjct: 61 DFSYGVTGASNNVITKMGNLKKADSDTSVAYTGKGWFVVGKNKEGQFEIGEDNFDVSDEN 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT------------SAREVQK 147 + Y N L + + + + Sbjct: 121 YFTKNGDFTIDSDGYLVNSEGYYLYGVNLGKINGNNFKASQDPEKDYKELAKGVMKPISI 180 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + +E +L L+ + + + T++ +D + I Sbjct: 181 PPQISYQPVETTKVDLSVNLNRTGELKNVVLAHTSNGVFNEASFFNQDFNALANRDGDMI 240 Query: 208 STIVRNNNDMVVYTSDGTT-LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 D+ V DGT + D + +T+ I D + + Sbjct: 241 RPNTFPKADIEVTMPDGTVQIAHYEYGDGTSSQGKFHTIGQLQYLIKRDTGLDLELNRNP 300 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 K +L ++++ + +L + E D + N + Sbjct: 301 NGSIDPKGVLVLKNNTNTPVKVKLSGNFFERLHLSGEMDNMGKNDYLAGTNLSVPSFTNT 360 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 +G + N + N + + + + + + Sbjct: 361 TEIFDEGGKKYAMHNEYFLVNAGDSEGTQKMPETWNVRSYIHEFSGNRMLISSEVKEGKI 420 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 FDP + + + L +RS + ++ + + Sbjct: 421 FFDPSGKAEADDMEIPFLGKKSVKLTLSRSTNKVYKDSGVNDTEQDGKNRGEMSNIRINN 480 Query: 447 E 447 E Sbjct: 481 E 481 >gi|261821155|ref|YP_003259261.1| flagellar basal body rod protein FlgG [Pectobacterium wasabiae WPP163] gi|261605168|gb|ACX87654.1| flagellar basal-body rod protein FlgG [Pectobacterium wasabiae WPP163] Length = 260 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + + + N Q ++ + + Sbjct: 94 DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + + + L N +LE S + + Sbjct: 154 DGIVSVKLQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNESNPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 212 GLLFQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 16/211 (7%), Positives = 44/211 (20%), Gaps = 36/211 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ N I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ + ++ Q F ++ Sbjct: 61 MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + S + + A + + ++Q A Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKLQGQAATNQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + E N ++ ++ + Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202 >gi|259907636|ref|YP_002647992.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|224963258|emb|CAX54742.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|283477478|emb|CAY73394.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] Length = 260 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 2/170 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + D + S ++ N Q + + Sbjct: 93 YDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVG 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + +A + L N ++E S + + Sbjct: 153 EDGIVTATVPGQAAPQQIGQLTLANFINDAGLESLGGNL--YVETQASGAPNEATPGMDG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y T VN+ EEL +I+V+++Y I++K + +D+MLQ L + Sbjct: 211 AGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAVSASDQMLQRLAQL 260 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 18/245 (7%), Positives = 51/245 (20%), Gaps = 37/245 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + L + F ++ Sbjct: 61 TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + + + A+ + A + Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171 Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 +++ L L + + ++A +D L + E ++ Sbjct: 172 QLTLANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231 Query: 215 NDMVV 219 + V Sbjct: 232 TMIQV 236 >gi|88858141|ref|ZP_01132783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819758|gb|EAR29571.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 262 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 62/209 (29%), Gaps = 3/209 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ ++ + + + F + D Sbjct: 50 NQPGGRSSQDTEMPSGLMLGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + T + + ++ + ++ ++ ++ + N Sbjct: 110 GSLAYSRAGQFTTDGDGRVVTSGAGFPVQPEMNVPNDAQSLTISQDGEVSVRVRGQADNV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N E S + I + T VN Sbjct: 170 VIGQLTISDFINPSGLEPMGQNLFT--ETAVSGAPIQGNPGADGLGVIVQGALETSNVNT 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIETQRIYEMNSKVISSVDQMLN 256 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/159 (5%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + I N+ NA Y + + P + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60 Query: 56 RS-------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + + S + Sbjct: 61 EMPSGLMLGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPDGSLAYSRAGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + ++ + + EV Sbjct: 121 TTDGDGRVVTSGAGFPVQPEMNVPNDAQSLTISQDGEVS 159 >gi|302392939|ref|YP_003828759.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] gi|302205016|gb|ADL13694.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] Length = 262 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 2/184 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + F + + S N + ++ + Sbjct: 81 FAQGSFQQTGNPLDMAIEGDGFFQVVRPNGQVGYTRDGSFKRDSNGRIVTSDGYPLASDI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V A ++ + ++ + L RN E S Sbjct: 141 TIPEDTTDVSITAEGRVMVKQPGNEEVTEVGQIELSRFSNPAGLKSIGRNLFA--ETPAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + ++ F IS+ Y V + EE++ +I +++Y +++K I +D+MLQ Sbjct: 199 GGPTVGVPAEDGFGTISQGYLEKGNVKVVEEMTNMIAAQRAYEVNSKAIKASDQMLQQAN 258 Query: 477 EGVK 480 + Sbjct: 259 NLKR 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 9/142 (6%), Positives = 22/142 (15%), Gaps = 27/142 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A +I N+ N + + + + Sbjct: 1 MIRSLWTAATGMKAQQLNIDTISNNLANVNTNGFKKSRVNFQDLMYQSLREAGTPNNQGS 60 Query: 45 ISPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V R + + F + Sbjct: 61 QVPAGIEVGHGVRPAATQKLFAQGSFQQTGNPLDMAIEGDGFFQVV------RPNGQVGY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL 123 + L Sbjct: 115 TRDGSFKRDSNGRIVTSDGYPL 136 >gi|330899406|gb|EGH30825.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. japonica str. M301072PT] Length = 262 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 248 ISTADQMLQNLTQ 260 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/243 (5%), Positives = 46/243 (18%), Gaps = 30/243 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ +I N+ N + + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKKFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158 + L ++ T + + A + Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ++ + + +S + + + + + Sbjct: 175 QTADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234 Query: 219 VYT 221 + T Sbjct: 235 ITT 237 >gi|311280015|ref|YP_003942246.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] gi|308749210|gb|ADO48962.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] Length = 260 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + + Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRDGSFQVDQNGQLVTAGGYQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNLTTFMNDAGLESIGENLYT--ETQASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNDTTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVTTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 54/239 (22%), Gaps = 25/239 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD----KEIELEI 160 + + + A + + + ++ L Sbjct: 118 GSFQVDQNGQLVTAGGYQVQPAITIPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNLTT 177 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 L + + + +D L+ +L Q E ++ N + V Sbjct: 178 FMNDAGLESIGENLYTETQASGAPNDTTPGLNGAGLLYQGYVETSNVNVAEELVNMIQV 236 >gi|78221652|ref|YP_383399.1| flagellar basal body rod protein FlgG [Geobacter metallireducens GS-15] gi|78192907|gb|ABB30674.1| Flagellar basal-body rod FlgG [Geobacter metallireducens GS-15] Length = 262 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 51/183 (27%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + I+ D S + Q R S Sbjct: 80 IFTIGNINQTGNELDMAIEGDGFYQIQMPDGTTTYTRSGAFKRDSQGRVVTSDGYPLIPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G ++ + + A + E + S Sbjct: 140 IVIPNNATAINIGNDGTVSVSQAGQKSPTNVGNIQLAMFSNPSGLLAIGKNLFQESDSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q ++ + V++ EE+ +I +++Y +++K + D+MLQT Sbjct: 200 NATTGTPGQNGLGTTAQGFLEMSNVSVMEEMVNMITGQRAYEVNSKAVQTADEMLQTANS 259 Query: 478 GVK 480 + Sbjct: 260 LKR 262 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 8/162 (4%), Positives = 30/162 (18%), Gaps = 27/162 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + + N+ N + + + Sbjct: 1 MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNMKTTGSPSTNTT 60 Query: 46 -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + K ++ + + F ++ + Sbjct: 61 QVPSGIQIGLGAKLAAVTKIFTIGNINQTGNELDMAIEGDGFYQIQ------MPDGTTTY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + L ++ N Sbjct: 115 TRSGAFKRDSQGRVVTSDGYPLIPEIVIPNNATAINIGNDGT 156 >gi|188534168|ref|YP_001907965.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] gi|188029210|emb|CAO97082.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] Length = 260 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + + D + S N Q +N F V ++ Sbjct: 94 DVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQLVTNAGFPVQPAIVIPPNSLSMTISR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + ++ + L N + E S + + Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFINDAGLSSMGENL--YQETQASGAPNESNPGNNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/170 (7%), Positives = 36/170 (21%), Gaps = 21/170 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S + Sbjct: 61 TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + ++ + + + A+ Sbjct: 118 GSFQTDQNGQLVTNAGFPVQPAIVIPPNSLSMTISRDGVVSVTQQGQANP 167 >gi|330892783|gb|EGH25444.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 280 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 19/246 (7%), Positives = 59/246 (23%), Gaps = 12/246 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF-- 63 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61 Query: 64 --DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L + E+ + T ++ D + + ++ + + Sbjct: 122 RLQGYAANEQGEIKRGLRT------DLQIDTSNVSARATTRVAENINLDASLPSLARLPV 175 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 D + +Q G + + ++++ Y T + + N Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGAGATALPAADHELKQYFV--KTGDSQWSMYVLIDGRN 233 Query: 242 SYTVTS 247 S Sbjct: 234 PVDPNS 239 >gi|307627452|gb|ADN71756.1| flagellar basal body rod protein FlgG [Escherichia coli UM146] Length = 260 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSC 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|289679012|ref|ZP_06499902.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae FF5] Length = 86 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 +L +++ + S S + + V + S + GV+L EE S LIK Sbjct: 1 GGGGTSLSGAYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIK 60 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479 +Q Y S+++I + TL+ + Sbjct: 61 YQQYYTASSQIIKAAQTIFSTLINSL 86 >gi|104782840|ref|YP_609338.1| flagellar basal body rod protein FlgG [Pseudomonas entomophila L48] gi|95111827|emb|CAK16551.1| Flagellar basal-body rod protein flgG [Pseudomonas entomophila L48] Length = 261 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F D + + + + Q + F Sbjct: 77 TQKNFQTGGLQNTENPLDMAINGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVNADGFAL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + V I + + A L N +LE Sbjct: 137 EPAIVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQTADFINPAGLQAIGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + F + V+ EEL +I +++Y +++K+I DKML Sbjct: 195 TAASGAPQIGTPGLNGFGTSLQKTLENSNVSTVEELVNMITTQRAYEMNSKVISAADKML 254 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 48/242 (19%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ + I N+ N + R + Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N L + + + F + + Sbjct: 61 ELPSGLQVGTGVRVVGTQKNFQTGGLQNTENPLDMAINGRGFFQILQ------PDGTVSY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + N L V A+ + + A L+ Sbjct: 115 TRDGTFHLNSDGQIVNADGFALEPAIVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + N+ AS + + ++ Sbjct: 175 TADFINPAGLQAIGNNLFLETAASGAPQIGTPGLNGFGTSLQKTLENSNVSTVEELVNMI 234 Query: 220 YT 221 T Sbjct: 235 TT 236 >gi|332531620|ref|ZP_08407517.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] gi|332038983|gb|EGI75412.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] Length = 259 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 2/177 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + F + D + + + I ++ G V Sbjct: 82 TQGNLVQGRPLDVAINGNGFFQVSMPDGTTQYTRDGALEISATGALVTSNGLPLADGIVI 141 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ + + +A L +N E S + Sbjct: 142 PPNASDLSIADDGTVTAKLPGQTVAQTIGNITLATFINPAGLEAKGQNLFA--ETAASGT 199 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + S + + Y + VN+ +EL +I+ +++Y +++K I +D+MLQ L Sbjct: 200 PNTGAPSANGIGKLMQGYLESSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQMLQKL 256 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + A+ +Q +I N+ N+ + R + Sbjct: 1 MFNSLWIAKTGMEAQQRQLDTISNNLANSSTNGFKRSSVVFEDL 44 >gi|242310749|ref|ZP_04809904.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] gi|239523147|gb|EEQ63013.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] Length = 764 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 34/354 (9%), Positives = 94/354 (26%), Gaps = 17/354 (4%) Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 + SA E+ + E+ + N + + + Sbjct: 416 YQRSAEEITMVEDPETGELVPQNPAEDTQAWIEVGENTKGMIAEYQAGNNYQENAMVTLN 475 Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257 ++ G + + +L T +E N+ + + Sbjct: 476 GILYQKVNGAGNTNPSEDSSGWRILMSDSLDSTQLNVPTYET-NTEVYSDTGEKFILKNQ 534 Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 + QG I ++R ++ + VL D A + Sbjct: 535 YILIEQGDQTATPPINERWEVRSAIYDSTGKTMISQNPVLSEISFNADGSANATPFAVEF 594 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 +L S ++ + ++ + + + ++ + Sbjct: 595 QGGSIQVNLAQSDDGKSSSNFAY-----TDSALKSATQDGTESGIMDDIVINEDGIILVN 649 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM-----------KSQ 426 + + + +A + L + N + + + Sbjct: 650 FTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFEMNAMTINGETSVVSGPPLLAWEETGTAS 709 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + T V+ L+ LI ++ Y +S K I D+++Q ++ + Sbjct: 710 LKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKR 763 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/278 (9%), Positives = 64/278 (23%), Gaps = 29/278 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 ++ + NI N + + Sbjct: 1 MVGSLYSGISGIKTHQVGIDVTSNNIANINTTGFRANTPEFKSLFSTNLNYVNSNSPVAN 60 Query: 49 ----NVTVVTQRSENKNMF----DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 VT+ + + D + S G + + ++ + + + + Sbjct: 61 DYNYGVTLGSNAINTNDGTYVSADGDFNVAYSGKGWFVVGLNKNGEFDINNPNYNVKQNY 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 E Y N S I+ + T +Q+ A+ + I Sbjct: 121 FTRDGSFSLDGEGYLVNSSG--YYMYGINLGKIAADGTLTGTNNLQQDYANLGGSVLEPI 178 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + T+ + ++ + + S + + Sbjct: 179 QIPKELHYQPTLTTEVNLAVNLNRTQNAKGITALQDINGNFSMEK-----FLAQDINSLM 233 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 S G L +DI F + T+ + G Sbjct: 234 DSSGKLLDAKNYKDITFSIEQNGVTTNHTFTYGDTGAN 271 >gi|167945787|ref|ZP_02532861.1| hypothetical protein Epers_04305 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 168 Score = 70.1 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 57/154 (37%), Gaps = 4/154 (2%) Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + + + K + S +G+ S + + AD + ++ Sbjct: 16 LGTGVELHGINRQYDDFTAKRVRDGRSTVGELDAFYSNAQRLDSILADPA--VGLSPALN 73 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 ++++ + + + + ++ + +V+ + ++ +A ++ ++ + + R Sbjct: 74 DFFNAMQELADDPASIPSRQLLLAESRSLVERMHDLDQQFADSQAQVNRRLDDVVQEIDR 133 Query: 166 FLSELTVVNDAIKFKTASK--HDAHDFLDQRDVL 197 + NDA+ +D LDQRD L Sbjct: 134 LAESIANANDAVVSALGHGSHQTPNDLLDQRDEL 167 >gi|163783988|ref|ZP_02178953.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159880748|gb|EDP74287.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 327 Score = 70.1 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 34/337 (10%), Positives = 78/337 (23%), Gaps = 13/337 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ F N + + I NI N + + + S N Sbjct: 1 MIQSFYTGNAGLNANQKWLSVISDNIANVNTIGFKAERANFEDL----IASSITSFANNA 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + S IG S N + ++ + Sbjct: 57 PKNMEIGGGSFIGSTTK---------DFSQGALKNTNIATDLALDGEGFFMVQDKQGVTY 107 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + N + +Q DA+ I I + + V + K+ Sbjct: 108 YTRAGQFRTDANGDLINLNGMYLQGWSLDANGNISGSIGKINIPNAMDPHVTSKLALKSP 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +A L + + + ++ I ++ V + + + E + F ++ Sbjct: 168 TNLNASSPLITKTLDTSDATTYNYVNAITVYDSLGVSHQAQLYFVHENSNQWRVFGLLDD 227 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 + + IK + D L + Sbjct: 228 EPIQFNVPGDTNTYDSLLVEFNGVGQINSIKGYGINTNQTETNVLENSDLGKYTLANTPV 287 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + V G D + ++ Sbjct: 288 LPGSLVITQYTVGGTPTTVNWIDDGHGNIIDLNNNNK 324 >gi|304397206|ref|ZP_07379085.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308186395|ref|YP_003930526.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] gi|304355355|gb|EFM19723.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308056905|gb|ADO09077.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] Length = 260 Score = 70.1 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + D + + + + N Q +N F G Sbjct: 82 TQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRDGAFQVDQNGQLVTNSGFPVQPGIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ + L N + E S Sbjct: 142 IPANATSITVSRDGVVSVTQQGQAQAAQVGQLTLSTFMNDAGLDSVGENL--YKETQASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q + + Y+ T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 200 APTDSTPGQNGAGLLYQGYTETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLAKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 29/149 (19%), Gaps = 21/149 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R + T Sbjct: 1 MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S Sbjct: 61 TLPSGLQIGTGVR---PVTTERLHTQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + A Sbjct: 118 GAFQVDQNGQLVTNSGFPVQPGITIPANA 146 >gi|124516715|gb|EAY58223.1| Flagellar basal body rod protein FlgG [Leptospirillum rubarum] Length = 261 Score = 70.1 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 9/144 (6%), Positives = 22/144 (15%), Gaps = 28/144 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A + I N+ N + + R+ Sbjct: 1 MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60 Query: 46 --SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V ++ + F + + Sbjct: 61 NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQI------SLPDGRTA 114 Query: 101 THYISKLRDSLESYSKNLSEDILG 124 + Sbjct: 115 YTRDGTFSIDGQGRLVTQDGLPTN 138 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 ++ L N ++E S L + + VN+ EEL Sbjct: 176 LSQFVNPAGLESRGNNL--FMETAASGQPQLSNPGTNGTGRLQSGFLEASNVNVAEELVN 233 Query: 451 LIKVEQSYNISNKLIMFTDKML 472 ++ +++Y + I ++ML Sbjct: 234 MVIGQRAYQMDATGIRTVNRML 255 >gi|56551507|ref|YP_162346.1| hypothetical protein ZMO0611 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543081|gb|AAV89235.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 411 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 39/474 (8%), Positives = 104/474 (21%), Gaps = 67/474 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 F + N A + NI N+ + + + Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKK--------------------------- 34 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 F L N + S S + L Sbjct: 35 -------------TTTDFGELVADSPLASGQNIGQGTRLRATIQDFTSGSMKTTNRALDM 81 Query: 126 TVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 V + +V++ S + + + + +++ +L N + Sbjct: 82 MVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVTSDGHYLQVYATTNSGNIYNNGET 141 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 A +++ L + + I T + + Sbjct: 142 GSATGGRVVKNLTLPSYEDQVSI---------------SSATGETVQVGNNLARTGDVTV 186 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + + + + + +L I + N + A + Sbjct: 187 TGTNGDTVIHNAKITLGGATINSDGSTTGGVLTITGGTIGAGVNSVANTATYTSTKAAAT 246 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + G+ + + + ++S Sbjct: 247 ITTSAGVSTLTGVTDLGTLSYNGDTYTGSPITAFNPQTSTDESGDTSSALSNISVGTDGK 306 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 V + + + + W S S + Sbjct: 307 VTATFANGNQYILGAVALGDVNNRNGLHSTGNA-----------NWTVTGTSGSLNYREA 355 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++L +EL LI ++++ ++K I ++M+ ++ Sbjct: 356 DTSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 409 >gi|110632656|ref|YP_672864.1| flagellar basal body rod protein FlgG [Mesorhizobium sp. BNC1] gi|110283640|gb|ABG61699.1| flagellar basal-body rod protein FlgG [Chelativorans sp. BNC1] Length = 262 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 40/181 (22%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 + A + I NI N + + R + V Sbjct: 3 ALSIAATGMSAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQVERLQGVPERANQNIV 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + L + + + + + ++ Sbjct: 63 PEGANIGLGVKTAAVRNVHVQGSLTNTGNKLDMALVGKGWFQIE------GADGEPLYSR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + A+ V N S + +I AD + +++ Sbjct: 117 AGAFNTNATGQLVTVDGFPVTPAITIPADAVEVIVNKSGQVFARIDGQADLQELGQLTLA 176 Query: 164 R 164 Sbjct: 177 N 177 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +A + L N + E S + + F + + Y Sbjct: 164 QADLQELGQLTLANFSNEAGLAPIGNNL--FRETPASGPATIGVPGDPGFATVEQGYLEA 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ +E++ LI +++Y +++K+I D+M T+ + ++ Sbjct: 222 SNVDPVKEITELISAQRAYEMNSKVITAADEMAATVTQAMR 262 >gi|259908810|ref|YP_002649166.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|224964432|emb|CAX55941.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|283478792|emb|CAY74708.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] gi|310767292|gb|ADP12242.1| Flagellar basal-body rod protein [Erwinia sp. Ejp617] Length = 260 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + + D + S N Q ++ F V ++ Sbjct: 94 DVAINGQGFFSVQLPDGTAAYTRDGSFQTDQNGQLVTSAGFPVQPAIVIPANSLSMTISR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + ++ + L N + E S + + Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSSMGENL--YQETQASGAPNESNPGNNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 21/170 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDGQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S + Sbjct: 61 TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQLPDGTAAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + ++ A + + + A+ Sbjct: 118 GSFQTDQNGQLVTSAGFPVQPAIVIPANSLSMTISRDGVVSVTQQGQANP 167 >gi|42526518|ref|NP_971616.1| flagellar basal body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816711|gb|AAS11497.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|325473456|gb|EGC76651.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 264 Score = 69.7 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 6/256 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + N + + + ++ V A V + Sbjct: 11 GMNTQQANIDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDTITPVGVQMGH 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---R 345 A I S+ + D + ++ Sbjct: 71 GARLAATQRIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSFKIDADRQLVT 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYA 404 SN + + + N ++ + D + + N L Sbjct: 131 SNGLRVLPEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIEVGQIELYRFQNNAGLSAEG 190 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + + S + F + V+ E+ +I +++Y ++K Sbjct: 191 SNL--FRQTPASGTAIPGRPGFTGFGRTEHKFLEMSNVSTVSEMVNMIVAQRAYEFNSKA 248 Query: 465 IMFTDKMLQTLLEGVK 480 I +D ML T + + Sbjct: 249 IQTSDNMLGTAVSLKR 264 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 16/171 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ A N ++ N+ N + + ++ Sbjct: 1 MVRSLWTAATGMNTQQANIDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDT 60 Query: 52 ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107 V Q + ++ + E + Sbjct: 61 ITPVGVQMGHGARLAATQRIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSF 120 Query: 108 RDSLESYSKNLSED-ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + +L + + + V D D IE Sbjct: 121 KIDADRQLVTSNGLRVLPEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIE 171 >gi|223040682|ref|ZP_03610951.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] gi|222878046|gb|EEF13158.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 58/216 (26%), Gaps = 2/216 (0%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 A + + + + ++ + ++ + F + Sbjct: 49 MEYAGTATSATTKSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLP 108 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + + + ++ ++ + + ++ Sbjct: 109 DGTTAYTRNGAFKLNSEGTVVNSDGYVLQPQMTIPADATQISVGTDGTVSVLQPGNTEMA 168 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L N +L S + I + + V L Sbjct: 169 QVGRIELANFINPAGLHSMGDNL--YLPTGSSGEVVVGTAGLDGLGTIRQGFVEMSNVQL 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE++ LI +++Y ++K I +D ML + + Sbjct: 227 VEEMTDLITGQRAYEANSKAITTSDDMLSIVNSLKR 262 Score = 63.1 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 36/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A Q NI N + Y + Sbjct: 1 MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K S+ + F ++ + Sbjct: 61 KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E N +L + A+ + T + + I Sbjct: 115 TRNGAFKLNSEGTVVNSDGYVLQPQMTIPADATQISVGTDGTVSVLQPGNTEMAQVGRIE 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|296134367|ref|YP_003641614.1| fagellar hook-basal body protein [Thermincola sp. JR] gi|296032945|gb|ADG83713.1| fagellar hook-basal body protein [Thermincola potens JR] Length = 362 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/237 (7%), Positives = 46/237 (19%), Gaps = 34/237 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + SI N+ N + Y + Sbjct: 1 MLQALWSASSGMLGQQLAMDSIANNLANVNTTGYKKSRVEFQDLLYSEMRAPGKKTLRGE 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + V ++ + + +F A+ + Sbjct: 61 IIPTGFQTGNGVRPAGTPVI---FGQGIIQQTDNPLDLAIEGNAFFAV------RRPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + ++ + A I Sbjct: 112 LAYTRDGSFKLDAKGTLVTADGSKVLDENLNPLTFDSPQSLKIDNAGAILEQQAVGRIPG 171 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ-RDVLLQKISEIIGISTIVRNN 214 + L ++ ++ A + RD+ Q + ++ Sbjct: 172 FVFEAADKLEKVEDGYFRPTRESGKALPAEQNNKEGRDLYFQVLLPDGKVAYTKETQ 228 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L + N E S + + + + S V + EE+ +I Sbjct: 280 FVNPAGLNKIGSNMYA--ESVNSGAATVAGPADY---TLRSSALEGSNVEVAEEMVNMII 334 Query: 454 VEQSYNISNKLIMFTDKML 472 ++Y +S++ I +D+ML Sbjct: 335 ANRAYELSSRSIRTSDEML 353 >gi|332704823|ref|ZP_08424911.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] gi|332554972|gb|EGJ52016.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + N L RN ++E S + +++ + Sbjct: 162 QGNELSSTDLQLYTFQNNAGLNAIGRNL--FIETEASGPATAGTPGEENVGTLAQGFLEG 219 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V L +E+ +I ++++ +++K I +D MLQT + + Sbjct: 220 SNVELVDEMVGMIIGQRAFEVNSKAISTSDTMLQTAINVKR 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 28/143 (19%), Gaps = 28/143 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49 ++ A +I N+ N + + + N Sbjct: 1 MMRSLWTAATGMVAQQMNIDTISNNLANVNTIGFKKSRAEFEDLMYQTMKIAGTRTEGGN 60 Query: 50 VTVVTQRS--------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 VT V + +K S+ + + D Sbjct: 61 VTPVGIQMGMGVRPMTVHKFFTQGDFQNTSNPLDIAIEG-------DGFFLVDFNGTEAF 113 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + E + +L Sbjct: 114 TRAGAFKLDNEGRMVTANGYLLQ 136 >gi|308050022|ref|YP_003913588.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632212|gb|ADN76514.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 261 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 2/186 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +V + + F + D + + ++ Sbjct: 74 ITGTQKVFTTGDIITTNQPLDLAIMGQGFFQVEQPNGDFAYTRDGQFYRNADGLVVTSEG 133 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + V + D+ + +A L + N Sbjct: 134 MPLVPAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELGQITLANFTNPAGLEAFGNNL-- 191 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S + + + VN+ EE+ +I +++Y ++ K++ TD Sbjct: 192 YRETAASGVAIEGIPGDAAIGQLKQGTLEGANVNVVEEMVEMISTQRAYEMNAKVVSSTD 251 Query: 470 KMLQTL 475 ML+ L Sbjct: 252 DMLKYL 257 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 20/245 (8%), Positives = 56/245 (22%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVSFNDLFYQTQRQPGAMADQQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + + + + + Q F +++ + Sbjct: 61 ELPSGLQLGTGVRITGTQKV---FTTGDIITTNQPLDLAIMGQGFFQVEQ------PNGD 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + L V + + + +I DA + Sbjct: 112 FAYTRDGQFYRNADGLVVTSEGMPLVPAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELG 171 Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +I+ N+ + AS + K + G + V Sbjct: 172 QITLANFTNPAGLEAFGNNLYRETAASGVAIEGIPGDAAIGQLKQGTLEGANVNVVEEMV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 EMIST 236 >gi|262364765|gb|ACY61322.1| flagellar hook protein [Yersinia pestis D182038] Length = 104 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +N W E N+S + L + + V++ EL L+ +++Y S K+ Sbjct: 30 QNGTSWSESNKSGAALLGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKI 89 Query: 465 IMFTDKMLQTLLE 477 I D M+ L + Sbjct: 90 ISTNDSMMNALFQ 102 >gi|77359724|ref|YP_339299.1| flagellar basal body rod protein FlgG [Pseudoalteromonas haloplanktis TAC125] gi|76874635|emb|CAI85856.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 63/208 (30%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ ++ + + + F D Sbjct: 50 NQPGGRSSQDTEMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384 + + T + + ++ + ++ ++ ++ + N Sbjct: 110 GNIAYSRNGQFTTDGDGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVSVRVAGQADNV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N E S + I + T VN+ Sbjct: 170 VIGQITISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVDGLGTIIQGSLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+M+ Sbjct: 228 TEELVNLIETQRVYEMNSKVISAVDEMM 255 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 11/165 (6%), Positives = 35/165 (21%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + ++ + + I N+ NA Y + + Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60 Query: 50 --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + KN + +++ F + + N Sbjct: 61 EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQ------PDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + + ++ ++ + EV Sbjct: 115 SRNGQFTTDGDGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVS 159 >gi|294140187|ref|YP_003556165.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] gi|293326656|dbj|BAJ01387.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ +V + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q ++ S +++ ++ ++ Sbjct: 108 PDGTAAYTRNGQFTLDDTGQMVTSGSGYVVQPAITIPDNATSITVSAEGEVSVKTPGTIE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ ++ L +N +LE S + S I + T V Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 10/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + + I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I + ++ EV Sbjct: 121 TLDDTGQMVTSGSGYVVQPAITIPDNATSITVSAEGEVS 159 >gi|302878278|ref|YP_003846842.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] gi|302581067|gb|ADL55078.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 56/181 (30%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + D + + Q + + Sbjct: 80 IHTQGNLQQTGNQLDVAINGSGFFQVLMPDGSTGYTRDGSFQRDAQGQMVTASGFPVQPA 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + G +++ + A+ + E S Sbjct: 140 ISLPANAITVTIGRDGVVSVTQPGVAAPVQVGSMQVTTFINPAGLMAQGENLYQETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +S++Y T VN+ EE+ +I+ +++Y I++K I +D+MLQ L + Sbjct: 200 TPSTNVPGTNGSGLLSQNYVETSNVNVVEEMVNMIQTQRAYEINSKSITTSDQMLQKLSQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/262 (6%), Positives = 55/262 (20%), Gaps = 34/262 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ ++ + Q +I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDTIANNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSSQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L + + F + + Sbjct: 61 QIPSGLQIGTGVRPVAAERIH---TQGNLQQTGNQLDVAINGSGFFQVL------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + S + + A + V + +++ Sbjct: 112 TGYTRDGSFQRDAQGQMVTASGFPVQPAISLPANAITVTIGR-DGVVSVTQPGVAAPVQV 170 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + F++ ++ + + + + T N + + Sbjct: 171 GSMQVTTFINPAGLMAQGENLYQETASSGTPSTNVPGTNGSGLLSQNYVETSNVNVVEEM 230 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 V +E + I Sbjct: 231 VNMIQTQRAYEINSKSITTSDQ 252 >gi|163803171|ref|ZP_02197054.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] gi|159173071|gb|EDP57904.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] Length = 261 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + I ++ Sbjct: 77 TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQISLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S S D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TAASGSADELIAGEDGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 14/180 (7%), Positives = 40/180 (22%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + Q F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E N L + + + + D + + +IS Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQIS 174 >gi|330955627|gb|EGH55887.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 208 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 2/160 (1%) Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 I + Q S L+ + + N+ +L Y Sbjct: 50 TTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATY 109 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + ++ + L + W E S +I+ Sbjct: 110 TNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALE 167 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EL LIK + +Y + K I ++QT ++ Sbjct: 168 ESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 207 >gi|114566479|ref|YP_753633.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337414|gb|ABI68262.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 261 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 2/151 (1%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + + I N Q + L +G + ++++ + + Sbjct: 113 YTRDGAFKIDANGQLVTADGNLLEGAGTFDEGAYDIQIASDGKISYMIPGQETPEEAGQL 172 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + L + +N + S + + Y V + EE+ Sbjct: 173 KLFKFINPAGLQKIGKNL--YRATPNSGEAEEWQPDSDNSVSLEAGYLEMSNVQIVEEMV 230 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y I++K+I+ +D+MLQT + Sbjct: 231 NLITAQRAYEINSKVIISSDEMLQTAANLRR 261 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 9/154 (5%), Positives = 29/154 (18%), Gaps = 30/154 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + ++ N+ N + + ++ Sbjct: 1 MMRSLYTASSGMYAQQLNIDTLSHNMANVNTVGFKKQRLEFQDLLYQTIRRPAADEDRNE 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + L A + + +F +K + Sbjct: 61 PVGLLVGLGVKPAAINTI---FNTGNLQATENPLDVAINGTAFFGVK-----VAGNDELL 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + ++L + Sbjct: 113 YTRDGAFKIDANGQLVTADGNLLEGAGTFDEGAY 146 >gi|2275161|gb|AAB81413.1| FlgG [Sinorhizobium meliloti] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A N I NI N + Y R + Sbjct: 3 ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + ++ + Sbjct: 63 PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + V + F +S + + +I D + + ++ Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TIAN 177 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 2/163 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + V + D + + + Q + + G + + Sbjct: 93 YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + ++ D+ + +A L N + + S + + Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEPMGENL--FRQTPASGDPIVGTPADPG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 F I ++Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 211 FAQIKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253 >gi|330899411|gb|EGH30830.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. japonica str. M301072PT] Length = 97 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%) Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 +L +++ + S S + + V + S + GV+L EE S LI Sbjct: 11 NGGVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLI 70 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479 K +Q Y S+++I + TL+ + Sbjct: 71 KYQQYYTASSQIIKAAQTIFSTLINSL 97 >gi|90422610|ref|YP_530980.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90104624|gb|ABD86661.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 34/184 (18%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + +Y R T Sbjct: 3 ALAIAATGMSAQQLNVEVIANNIANINTTSYKRARAEFTDLFYQIDRMQGVPNRVGEGAV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L + + + + + Sbjct: 63 PEGAKLGLGVRSAAVRKLH---LQGALTQTGNPYDLAVNGRGWFQVV------GPNGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + ++ V N S + K+ + + Sbjct: 114 YTRAGAFNTNADGQLVTADGYNVDPAILIPQGTVEVTVNESGQVFAKLDGEITPRELGRL 173 Query: 161 SNLR 164 + Sbjct: 174 TLAN 177 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 2/173 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + + + + + Q + + D + + Sbjct: 87 TQTGNPYDLAVNGRGWFQVVGPNGETLYTRAGAFNTNADGQLVTADGYNVDPAILIPQGT 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 V + + +A L N + E S + Sbjct: 147 VEVTVNESGQVFAKLDGEITPRELGRLTLANFANEAGLDPLGSNL--YKETLSSGVPVVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + F I Y + V+ +E++ LI ++SY +++K+I D+M QT+ Sbjct: 205 VPGDPGFGKIYHHYLESSNVDPVKEITELISAQRSYEMNSKVITAADEMAQTV 257 >gi|260597447|ref|YP_003210018.1| flagellar basal body rod protein FlgG [Cronobacter turicensis z3032] gi|260216624|emb|CBA29921.1| Flagellar basal-body rod protein flgG [Cronobacter turicensis z3032] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|261339378|ref|ZP_05967236.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288318179|gb|EFC57117.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|156934438|ref|YP_001438354.1| flagellar basal body rod protein FlgG [Cronobacter sakazakii ATCC BAA-894] gi|156532692|gb|ABU77518.1| hypothetical protein ESA_02269 [Cronobacter sakazakii ATCC BAA-894] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 TQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 31/150 (20%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHTQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|15964415|ref|NP_384768.1| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021] gi|307311557|ref|ZP_07591198.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] gi|307318912|ref|ZP_07598343.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|17380480|sp|Q52946|FLGG_RHIME RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15073592|emb|CAC45234.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306895326|gb|EFN26081.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|306899574|gb|EFN30203.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A N I NI N + Y R + Sbjct: 3 ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + ++ + Sbjct: 63 PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + V + F +S + + +I D + + ++ Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TIAN 177 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 2/163 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + V + D + + + Q + + G + + Sbjct: 93 YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + ++ D+ + +A L N + + S + + Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEPMGENL--FRQTPASGDPIVGTPADPG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 F + ++Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 211 FAQVKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253 >gi|328543156|ref|YP_004303265.1| flagellar basal-body rod FlgG [polymorphum gilvum SL003B-26A1] gi|326412902|gb|ADZ69965.1| Flagellar basal-body rod FlgG [Polymorphum gilvum SL003B-26A1] Length = 259 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + I+ D + + Sbjct: 80 IMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSFERDANGTLVTIDGYTLDPG 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + F +A L N +LE S Sbjct: 140 IVIPNDARDLTISANGTVQAVVGVATQQFGQIQLARFVNKSGLEAIGDNL--YLETEASG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + + +SY V+ E+S LI +++Y +++++I D+M T Sbjct: 198 QPQVGIPGEEGYGDLQQSYLEMSNVDAVSEISDLIAAQRAYEMNSRIIQAADEMYSTTTN 257 Query: 478 G 478 Sbjct: 258 I 258 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/221 (6%), Positives = 40/221 (18%), Gaps = 16/221 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPENV 50 + A I N+ N Y R+ + V Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYQNLRRMGTDSSNAGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q I Q E + Sbjct: 63 PTGVQIGSGVKTAATARIMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSFER 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + L ++ + + + + + +++++ Sbjct: 123 DANGTLVTIDGYTLDPGIVIPNDARDLTISANGTVQAVVGVATQQFGQIQLARFVNKSGL 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + ++ AS + + S + + Sbjct: 183 EAIGDNLYLETEASGQPQVGIPGEEGYGDLQQSYLEMSNVD 223 >gi|195940720|ref|ZP_03086102.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|295096223|emb|CBK85313.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + A + + A +++ L Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQA---APVQVGQLN 174 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++I ++ + ++ Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGTPNE 203 >gi|313903628|ref|ZP_07837018.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313466181|gb|EFR61705.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 275 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 6/212 (2%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 ++ A ++ ++A G DP + Sbjct: 69 GVRLAATPRLWSQGPLQATGSPWDLAIEGAGFLQVADP-GTGEVLLTRGGTFAASPVPAG 127 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 G + + P G + ++ ++ Sbjct: 128 VPGGGEAGEALLVTDGAGRPLLAAGGQPLLLPAGSRGWVVSPDGEVRALLAGGREVPAGR 187 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 V L Q I + V+L E+ Sbjct: 188 LAVMVPPAPDALESRGEGLYALGGNPV----PAGAPGQDGAGWIRQGMLEQSNVDLALEM 243 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + L+ +++Y ++ + ++ D+ML +L+ ++ Sbjct: 244 TRLLASQRAYQLNARAVLTGDEML-SLINRLR 274 Score = 43.5 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 9/113 (7%), Positives = 15/113 (13%), Gaps = 29/113 (25%) Query: 19 QQFASIVRNIENADNKNYVRRDTMTTI---------------------SPENVTVVTQRS 57 +Q N+ N + V + Sbjct: 18 RQVDLTAGNLANVSTPGFKAARADFADLVYAAAQVPVAPPAAAAGGVQVGHGVRLAATPR 77 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 L A S F + + S Sbjct: 78 LWSQ---GPLQATGSPWDLAIEGAGFLQVAD-----PGTGEVLLTRGGTFAAS 122 >gi|212634350|ref|YP_002310875.1| flagellar basal body rod protein FlgG [Shewanella piezotolerans WP3] gi|212555834|gb|ACJ28288.1| Flagellar basal-body rod protein FlgG [Shewanella piezotolerans WP3] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 G + ++ + + Q+ +V + + F + D Sbjct: 50 NQAGGVSASNTKLPNGLNIGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q + S +++ ++ ++ ++ N+ Sbjct: 110 GTAAYTRTGQFSLDDTGQIVTPGSGYVVQPAITIPDDATSITVSAEGEVSVKTPGNAENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + S I + T VN+ Sbjct: 170 VVGQLAMSDFINPAGLDPMGQNL--YMETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 9/159 (5%), Positives = 34/159 (21%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53 + ++ + + I N+ NA + + + V+ Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGVSASNT 60 Query: 54 ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + + L + + Sbjct: 61 KLPNGLNIGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPDGTAAYTRTGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I ++ ++ EV Sbjct: 121 SLDDTGQIVTPGSGYVVQPAITIPDDATSITVSAEGEVS 159 >gi|127512281|ref|YP_001093478.1| flagellar basal body rod protein FlgG [Shewanella loihica PV-4] gi|126637576|gb|ABO23219.1| flagellar basal-body rod protein FlgG [Shewanella loihica PV-4] Length = 262 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVSVKTPGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ ++ L +N +LE S + S I + T V Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 10/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + + I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I ++ ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVS 159 >gi|237817504|ref|ZP_04596494.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787259|gb|EEP61477.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 106 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57 MSL + + N + + +++ NI NA Y R +T + T S Sbjct: 1 MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNS 57 >gi|296102906|ref|YP_003613052.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057365|gb|ADF62103.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 69.7 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|90408062|ref|ZP_01216233.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] gi|90310819|gb|EAS38933.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ V L N S + + + + T V Sbjct: 168 NQVVGQINVNDFVNPSGLEPMGENLYTETG--ASGAPIQGVPGGDGLGFLRQGMLETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRVYEMNSKVISAVDEML 255 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/199 (8%), Positives = 46/199 (23%), Gaps = 15/199 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + ++ + A+I N+ NA + + + Sbjct: 1 MHPALWISKTGLDAQQTNVATISNNLANASTVGFKKSRAIFEDLLYQNINQPGANATQNT 60 Query: 57 SENKNMFDK------VLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKL 107 + + + S S + + + + +S + Sbjct: 61 KLPSGLMIGAGAKVVAVQKNFSQGNALTTKNSLDIMIDGRGFFEIEMPDGSSGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + I + + S EV A + + N+ F+ Sbjct: 121 QLNEDGIIVTPGSGYALMPQIQIPNDALSISVGSEGEVSVRIAGQVENQVVGQINVNDFV 180 Query: 168 SELTVVNDAIKFKTASKHD 186 + + T + Sbjct: 181 NPSGLEPMGENLYTETGAS 199 >gi|237799211|ref|ZP_04587672.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] gi|330961201|gb|EGH61461.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. maculicola str. ES4326] gi|331022066|gb|EGI02123.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 130 TANGYALEPAIVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 248 ISTADQMLQNLTQ 260 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/264 (6%), Positives = 53/264 (20%), Gaps = 29/264 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A+ +I N+ N + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97 V +V + L ++ + + F + + + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRD 117 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + Y+ + + + T A + + + Sbjct: 118 GTFHLDANGQIVTANGYALEPAIVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQTA 177 Query: 158 LEISNLRRFLSELT-VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 I+ + + L + S + + +V Sbjct: 178 DFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITT 237 Query: 217 MVVYTSDGTTLFETVPRDINFEKM 240 Y + + N + Sbjct: 238 QRAYEMNSKVISTADQMLQNLTQN 261 >gi|225569971|ref|ZP_03778996.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM 15053] gi|225161441|gb|EEG74060.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM 15053] Length = 294 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/302 (7%), Positives = 79/302 (26%), Gaps = 8/302 (2%) Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 + + + + I ++T + + + + ++N Sbjct: 1 MVKSMYAAIAGLRSHQSKMDVISNNIANVNTWGYKSRSANFQDAMYQNVINSTAGNVNAG 60 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + + + + GS G + + + + + Sbjct: 61 GTGGQNSSQLGYGVNVGSITTNFTTGSWGFTGDPLNCMINGNGFFI-VGPMIADPTDGIA 119 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + ++ + + + + D G ++ + Sbjct: 120 SNNFATSGLSLSRVGIFSVDNNGYLIDDGRNYVYGFTQNADGTWDTDVLRPLQIPNDATG 179 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 +++ + + D +A + L + A + Sbjct: 180 EQYKIQTYKIGTDGTITGITFDKEQITIGKLALAAVENPNGLEQSAGYLYSAGPNAGQIT 239 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +Y V L +++ +I ++ Y ++K+I TD+ML+ L+ Sbjct: 240 AVEGDY-------FLSNYLEMSNVELASDMASMITTQRGYQANSKIITVTDEMLEQLVNM 292 Query: 479 VK 480 + Sbjct: 293 KR 294 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 46/205 (22%), Gaps = 21/205 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A + + I NI N + Y R M+ Sbjct: 4 SMYAAIAGLRSHQSKMDVISNNIANVNTWGYKSRSANFQ---------------DAMYQN 48 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 V+++ + + + + T + N + + Sbjct: 49 VINSTAGNVNAGGTGGQNSSQLGYGVNVGSITTNFTTGSWGFTGDPLNCMINGNGFFIVG 108 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +I + + + + N + + R +L + + A Sbjct: 109 PMIADPTDGIASNNFATSGLSLSRVGIFSVDN------NGYLIDDGRNYVYGFTQNADGT 162 Query: 186 DAHDFLDQRDVLLQKISEIIGISTI 210 D L + E I T Sbjct: 163 WDTDVLRPLQIPNDATGEQYKIQTY 187 >gi|119899025|ref|YP_934238.1| flagellar basal body rod protein FlgG [Azoarcus sp. BH72] gi|119671438|emb|CAL95351.1| flagellar basal-body rod protein FlgG [Azoarcus sp. BH72] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 4/252 (1%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + +++ +N V + + ++ Q + Sbjct: 11 GLDAQQTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQTQVGSGLQIGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + +A I + G+ + I D ++ Q Sbjct: 71 GVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIALPDGTTAYTRDGAFQLDNQGNVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARN 406 + + ++ +A + L N Sbjct: 131 ASGYPLADNINIPADTLTVTVAKDGTVSVLQAGQTTPTQIGAIQLATFINSGGLQSAGEN 190 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +LE S + +++ Y T VN+ EEL +I +++Y ++++ I Sbjct: 191 L--FLESASSGVATPNQPGTNGTGVLNQGYVETSNVNVAEELVNMIVTQRAYEMNSRAIQ 248 Query: 467 FTDKMLQTLLEG 478 +D ML L + Sbjct: 249 TSDSMLGRLTQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/259 (8%), Positives = 57/259 (22%), Gaps = 28/259 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + T + L ++ F + + Sbjct: 61 QVGSGLQIGTGVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIA------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + S L + A+ + V ++A ++ Sbjct: 115 TRDGAFQLDNQGNVVTASGYPLADNINIPADTLTVT-VAKDGTVSVLQAGQTTPTQIGAI 173 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 L F++ + + S +Q + + T N + +V Sbjct: 174 QLATFINSGGLQSAGENLFLESASSGVATPNQPGTNGTGVLNQGYVETSNVNVAEELVNM 233 Query: 222 SDGTTLFETVPRDINFEKM 240 +E R I Sbjct: 234 IVTQRAYEMNSRAIQTSDS 252 >gi|148266116|ref|YP_001232822.1| flagellar basal body rod protein FlgG [Geobacter uraniireducens Rf4] gi|146399616|gb|ABQ28249.1| flagellar basal-body rod protein FlgG [Geobacter uraniireducens Rf4] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 4/185 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + I+ D + + + Q R S Sbjct: 80 IFTAGNITQTGNEMDLAIEGEGFFQIQMPDGSTNYSRAGSFKKDSQGRMVNSDGYPLLPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 K G ++ N +A + L N + + Sbjct: 140 VIIPNNATKITVGNDGTVSVMQSGQNTPTSVGTIQLATFSNPAGLSSLGHNL--YQPTDS 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + Q +S+ + V++ EE+ +I +++Y I++K + D+MLQT Sbjct: 198 SGAATTGTSGQNGIGTLSQGFLEMSNVSVMEEMVNMIVGQRAYEINSKAVQAADEMLQTA 257 Query: 476 LEGVK 480 + Sbjct: 258 NNLRR 262 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 18/266 (6%), Positives = 56/266 (21%), Gaps = 28/266 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + + N+ N + + + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFQDLMYQNLKTSGAPSTNAT 60 Query: 47 --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V + +K + + + + F ++ ++ Sbjct: 61 QIPTGIQVGLGSKAAAVSKIFTAGNITQTGNEMDLAIEGEGFFQIQ------MPDGSTNY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + N L VI V +++ + + Sbjct: 115 SRAGSFKKDSQGRMVNSDGYPLLPEVIIPNNATKITVGN-DGTVSVMQSGQNTPTSVGTI 173 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 L F + + + + + + + +V Sbjct: 174 QLATFSNPAGLSSLGHNLYQPTDSSGAATTGTSGQNGIGTLSQGFLEMSNVSVMEEMVNM 233 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTS 247 G +E + + T + Sbjct: 234 IVGQRAYEINSKAVQAADEMLQTANN 259 >gi|17989431|ref|NP_542064.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. 16M] gi|23499916|ref|NP_699356.1| flagellar basal body rod protein FlgG [Brucella suis 1330] gi|62317103|ref|YP_222956.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|83269095|ref|YP_418386.1| flagellar basal body rod protein FlgG [Brucella melitensis biovar Abortus 2308] gi|148557926|ref|YP_001257213.1| flagellar basal body rod protein FlgG [Brucella ovis ATCC 25840] gi|161620236|ref|YP_001594122.1| flagellar basal body rod protein FlgG [Brucella canis ATCC 23365] gi|163844346|ref|YP_001622001.1| flagellar basal body rod protein FlgG [Brucella suis ATCC 23445] gi|189022368|ref|YP_001932109.1| flagellar basal body rod protein FlgG [Brucella abortus S19] gi|225628625|ref|ZP_03786659.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237816665|ref|ZP_04595657.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|254691412|ref|ZP_05154666.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|254695290|ref|ZP_05157118.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|254702576|ref|ZP_05164404.1| flagellar basal body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|254706292|ref|ZP_05168120.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|254711414|ref|ZP_05173225.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis B2/94] gi|254720610|ref|ZP_05182421.1| flagellar basal body rod protein FlgG [Brucella sp. 83/13] gi|254731833|ref|ZP_05190411.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|256029956|ref|ZP_05443570.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|256043073|ref|ZP_05446017.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|256059608|ref|ZP_05449806.1| flagellar basal body rod protein FlgG [Brucella neotomae 5K33] gi|256111943|ref|ZP_05452894.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|256158118|ref|ZP_05456036.1| flagellar basal body rod protein FlgG [Brucella ceti M490/95/1] gi|256252928|ref|ZP_05458464.1| flagellar basal body rod protein FlgG [Brucella ceti B1/94] gi|256256598|ref|ZP_05462134.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260544341|ref|ZP_05820162.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260564303|ref|ZP_05834788.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260568516|ref|ZP_05838985.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260757026|ref|ZP_05869374.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260759602|ref|ZP_05871950.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260882836|ref|ZP_05894450.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|261215659|ref|ZP_05929940.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|261220019|ref|ZP_05934300.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261313736|ref|ZP_05952933.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261319022|ref|ZP_05958219.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261323577|ref|ZP_05962774.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261753156|ref|ZP_05996865.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|265985650|ref|ZP_06098385.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|265986975|ref|ZP_06099532.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|265989511|ref|ZP_06102068.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|265993390|ref|ZP_06105947.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|265996635|ref|ZP_06109192.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|297249954|ref|ZP_06933655.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306838572|ref|ZP_07471409.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] gi|306841049|ref|ZP_07473773.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|17985308|gb|AAL54328.1| flagellar basal-body rod protein flgg [Brucella melitensis bv. 1 str. 16M] gi|23463493|gb|AAN33361.1| flagellar basal-body rod protein FlgG [Brucella suis 1330] gi|62197296|gb|AAX75595.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|82939369|emb|CAJ12317.1| Flagellar basal body rod protein [Brucella melitensis biovar Abortus 2308] gi|148369211|gb|ABQ62083.1| flagellar basal-body rod protein FlgG [Brucella ovis ATCC 25840] gi|161337047|gb|ABX63351.1| flagellar basal-body rod protein FlgG [Brucella canis ATCC 23365] gi|163675069|gb|ABY39179.1| flagellar basal-body rod protein FlgG [Brucella suis ATCC 23445] gi|189020942|gb|ACD73663.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225616471|gb|EEH13519.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237787478|gb|EEP61694.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|260097612|gb|EEW81486.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260151946|gb|EEW87039.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260155181|gb|EEW90262.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260669920|gb|EEX56860.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260677134|gb|EEX63955.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260872364|gb|EEX79433.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260917266|gb|EEX84127.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|260918603|gb|EEX85256.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261298245|gb|EEY01742.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261299557|gb|EEY03054.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261302762|gb|EEY06259.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261742909|gb|EEY30835.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|262550932|gb|EEZ07093.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|262764260|gb|EEZ10292.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|263000180|gb|EEZ12870.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|264659172|gb|EEZ29433.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|264664242|gb|EEZ34503.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|297173823|gb|EFH33187.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306288938|gb|EFM60238.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|306406358|gb|EFM62600.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + + + K++ ++ ++ Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 65 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 185 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 243 NSKVIQAADEM 253 >gi|253998486|ref|YP_003050549.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|313200561|ref|YP_004039219.1| flagellar basal-body rod protein flgg [Methylovorus sp. MP688] gi|253985165|gb|ACT50022.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|312439877|gb|ADQ83983.1| flagellar basal-body rod protein FlgG [Methylovorus sp. MP688] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 59/184 (32%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ ++ A + F + D + S + Q + + Sbjct: 76 ATERIFSQGNLQQTENAKDLAINGEGFFQVLLPDGSTAYTRDGSFQVDNQGQMVTASGYT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ + +A L N ++ Sbjct: 136 IQPAITIPANAQSITVGRDGTVSVTLPNSVATTQIGTIQLATFINPAGLQSKGENL--YV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + S + + +++ Y T VN+ EEL +I+ +++Y I++K I +D+M Sbjct: 194 ETSASGTASTNTPGANGAGVLNQGYVETSNVNVVEELVSMIQTQRAYEINSKAITTSDQM 253 Query: 472 LQTL 475 LQ L Sbjct: 254 LQRL 257 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/214 (7%), Positives = 42/214 (19%), Gaps = 36/214 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQSSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L +A + F + + Sbjct: 61 QLPSGMQLGTGVKPVATERI---FSQGNLQQTENAKDLAINGEGFFQVL------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155 + + + S + + A V T + + A Sbjct: 112 TAYTRDGSFQVDNQGQMVTASGYTIQPAITIPANAQSITVGRDGTVSVTLPNSVATTQIG 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N ++ + + Sbjct: 172 TIQLATFINPAGLQSKGENLYVETSASGTASTNT 205 >gi|157376214|ref|YP_001474814.1| flagellar basal body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157318588|gb|ABV37686.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ +V + + F + Sbjct: 48 TVNQAGGVSASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVVQPAITIPENATGITVSAEGEVSVKTPGTAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ + L +N S + S I + T V Sbjct: 168 SQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 33/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53 + ++ + + I N+ NA Y + + V+ Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 54 ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + + + + + + + Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVVQPAITIPENATGITVSAEGEVS 159 >gi|119775448|ref|YP_928188.1| flagellar basal body rod protein FlgG [Shewanella amazonensis SB2B] gi|119767948|gb|ABM00519.1| flagellar basal-body rod protein FlgG [Shewanella amazonensis SB2B] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 67/210 (31%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ A + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + ++ Q + S +++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFSLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVSVKTPGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ ++ L +N +LE S + S I + T V Sbjct: 168 SQIVGQLTLSDFINPSGLDPIGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I + ++ EV Sbjct: 121 SLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVS 159 >gi|15642194|ref|NP_231826.1| flagellar basal body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586257|ref|ZP_01676047.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121726538|ref|ZP_01679787.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|147674573|ref|YP_001217712.1| flagellar basal body rod protein FlgG [Vibrio cholerae O395] gi|153213600|ref|ZP_01948873.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|153817095|ref|ZP_01969762.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|153820850|ref|ZP_01973517.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|153825330|ref|ZP_01977997.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|153829351|ref|ZP_01982018.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|183179567|ref|ZP_02957778.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227082319|ref|YP_002810870.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|229507728|ref|ZP_04397233.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229512077|ref|ZP_04401556.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229513839|ref|ZP_04403301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229519213|ref|ZP_04408656.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229522144|ref|ZP_04411561.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229524190|ref|ZP_04413595.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229528800|ref|ZP_04418190.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229607232|ref|YP_002877880.1| flagellar basal body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254225803|ref|ZP_04919408.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|254849324|ref|ZP_05238674.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255747106|ref|ZP_05421051.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262161350|ref|ZP_06030460.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262167779|ref|ZP_06035481.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262191687|ref|ZP_06049863.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297580841|ref|ZP_06942766.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|298500427|ref|ZP_07010232.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|9656751|gb|AAF95340.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549523|gb|EAX59549.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121630991|gb|EAX63370.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|124115799|gb|EAY34619.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|125621709|gb|EAZ50038.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|126512363|gb|EAZ74957.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|126521642|gb|EAZ78865.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|146316456|gb|ABQ20995.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|148875192|gb|EDL73327.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|149741014|gb|EDM55083.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|183012978|gb|EDT88278.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227010207|gb|ACP06419.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|227014091|gb|ACP10301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|229332574|gb|EEN98060.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229337771|gb|EEO02788.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229341069|gb|EEO06074.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229343902|gb|EEO08877.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229349020|gb|EEO13977.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229352042|gb|EEO16983.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229355233|gb|EEO20154.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229369887|gb|ACQ60310.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254845029|gb|EET23443.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255735508|gb|EET90908.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262023844|gb|EEY42543.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262028661|gb|EEY47315.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262032426|gb|EEY50988.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297534667|gb|EFH73503.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|297541120|gb|EFH77174.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|327484714|gb|AEA79121.1| Flagellar basal-body rod protein FlgG [Vibrio cholerae LMA3894-4] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 3/189 (1%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ +V + + + F + D + + T+ Sbjct: 69 GAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403 ++ + R + + ++ + L Sbjct: 129 VTSGAGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPV 188 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N +L S + I +S T VN+ EEL +I+ ++ Y +++K Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246 Query: 464 LIMFTDKML 472 +I DKM+ Sbjct: 247 VISAVDKMM 255 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 16/226 (7%), Positives = 47/226 (20%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57 ++ + A+I N+ NA + + + Sbjct: 4 ALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63 Query: 58 ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 + + + + + + + Sbjct: 64 SGLMLGAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I E+ + N + V+ + + + + Sbjct: 124 DEGAIVTSGAGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 184 GLEPVGQNLYLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTE 229 >gi|309788147|ref|ZP_07682753.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] gi|308923999|gb|EFP69500.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] Length = 156 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 2/158 (1%) Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + D + + S + N Q + F ++ + Sbjct: 1 MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQ 60 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + L N E S + + + + Y T Sbjct: 61 AAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGAPNESTPGLNGAGLLYQGYVETS 118 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 119 NVNVAEELVNMIQVQRAYEINSKAMSTTDQMLQKLTQL 156 >gi|51599025|ref|YP_073213.1| flagellar basal body rod protein FlgG [Borrelia garinii PBi] gi|51573596|gb|AAU07621.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 265 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + +S V++ Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGILRQSILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + +I N+ N + + + TQ Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89 + L + +G + + + + E Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83 >gi|24374755|ref|NP_718798.1| flagellar basal body rod protein FlgG [Shewanella oneidensis MR-1] gi|24349419|gb|AAN56242.1|AE015761_12 flagellar basal-body rod protein FlgG [Shewanella oneidensis MR-1] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S ++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPPITIPEDATSITVSAEGEVSVKTPGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + + I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E+ ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPPITIPEDATSITVSAEGEVS 159 >gi|289679021|ref|ZP_06499911.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae FF5] gi|330972416|gb|EGH72482.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 248 ISTADQMLQNLTQ 260 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/246 (5%), Positives = 45/246 (18%), Gaps = 36/246 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A+ +I N+ N + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155 + L ++ T + + A Sbjct: 112 IAYSRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQII 171 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ ++ + + +S + + + + Sbjct: 172 GNIQTADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEEL 231 Query: 216 DMVVYT 221 ++ T Sbjct: 232 VNMITT 237 >gi|260779347|ref|ZP_05888239.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] gi|260605511|gb|EEX31806.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] Length = 362 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 30/363 (8%), Positives = 72/363 (19%), Gaps = 9/363 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + + + +I NI NA + T + + + Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + S G R + D ++Y + L Sbjct: 59 NFDKNGSVSGTGRAMDLAINGNGFFVTKDSAGQLLYTRSGVFGTDKDNYVIGNTGAKLQG 118 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 +D + I+ + + + + Sbjct: 119 YSVDGNNNL------LTGATGDIKISTSSLAAKATDKMEFIANLDATNSIVDQTVNPFDP 172 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 + D + S+ + + + Sbjct: 173 NNTDSFNSSYTTKVYDSQGKPHTVTQYFTKTADNVWEVNVQVDGGAGAVSTVAMTFNPDG 232 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + + ++ + Q N + L G E + Sbjct: 233 SIATPTGAYNVSFPAAGANPMSIDIDLSGSTQFGTGFGVSTNNPNGYTSGELAGVRVEDN 292 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + + + D QG+S+ + G S Sbjct: 293 GMVYATYTNGQSQLQGQVVLADFANPQGLSKVSGTAWTQSFSSGAPVMGVPGSGTLGDLT 352 Query: 366 KNL 368 Sbjct: 353 PGA 355 >gi|258404727|ref|YP_003197469.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] gi|257796954|gb|ACV67891.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 72/258 (27%), Gaps = 5/258 (1%) Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + T+ T + + + + + V + Sbjct: 1 MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + + A I + + + + + D + + + Sbjct: 61 DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQVTLPDGETAYTRAGAL 120 Query: 339 CVNPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + S+ L + + V G + + +A + Sbjct: 121 KKDGDGRVVTSDGYPLEPEIVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTIELARFS 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N LE S + + + + +++++ V+ +E+ +I + Sbjct: 181 NPAGLKNIGNNL--HLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEMVNMISAQ 238 Query: 456 QSYNISNKLIMFTDKMLQ 473 ++Y I++K + D+MLQ Sbjct: 239 RAYEINSKAVKTADEMLQ 256 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/242 (6%), Positives = 50/242 (20%), Gaps = 30/242 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + + A I N+ N + + + Sbjct: 1 MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60 Query: 45 ISPENVTVVTQRSENKNM---FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + ++ + + F + + Sbjct: 61 DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQV------TLPDGETAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L+ + L ++ + + V+ T ++ A + Sbjct: 115 TRAGALKKDGDGRVVTSDGYPLEPEIVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTI 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 E++ + N+ +S D + + + + + + Sbjct: 175 ELARFSNPAGLKNIGNNLHLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEMVNM 234 Query: 219 VY 220 + Sbjct: 235 IS 236 >gi|254505064|ref|ZP_05117215.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222441135|gb|EEE47814.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + +A +V L N + E S + + F + + Y + Sbjct: 166 QPREIGQLSLANFANDVGLEPVGGNL--FRETPASGAPVAGVPGDPGFGVVRQGYLESSN 223 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ +E++ LI ++ Y +++K++ D+M T+ G++ Sbjct: 224 VDPVKEITALISAQRGYEMNSKVMKAADEMANTVTNGIR 262 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 38/184 (20%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + + NI N + ++ R + Sbjct: 3 ALAIAATGMSAQQLNVEVVANNIANMNTTSFKRAQAEFSDLLYQAERLQGVPNRGGEDPV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L + + + + + S Sbjct: 63 PEGAQLGLGVKTAGIRKLH---MQGPLTNTGNQFDIALDGRGWFEI------TGPDDESL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + +I E + N + + KI + ++ Sbjct: 114 YTRAGSFNKNADGRLVTIDGYTVEPAIIVPEETIEVVINETGQVYSKIDGEIQPREIGQL 173 Query: 161 SNLR 164 S Sbjct: 174 SLAN 177 >gi|163750568|ref|ZP_02157806.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] gi|161329723|gb|EDQ00712.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ +V + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q ++ S +++ ++ ++ Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTSGSGYVVQPAITIPDNATSITVSAEGEVSVKMPGTIE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ ++ L +N +LE S + S I + T V Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIQSQRIYEMNSKVISAVDQML 255 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + A ++ + + I N+ NA Y + + + N Sbjct: 1 MQAALWISKTGLDAQQTNISVISNNLANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I + ++ EV Sbjct: 121 TLDDTGQIVTSGSGYVVQPAITIPDNATSITVSAEGEVS 159 >gi|27380965|ref|NP_772494.1| hypothetical protein bll5854 [Bradyrhizobium japonicum USDA 110] gi|27354131|dbj|BAC51119.1| bll5854 [Bradyrhizobium japonicum USDA 110] Length = 754 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 36/440 (8%), Positives = 97/440 (22%), Gaps = 8/440 (1%) Query: 41 TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + T VT S N + S G ++ + + Sbjct: 323 AIQTAGGAGVTASLSASGNIQISTGTGTDVSIGSGTAATALGISSVTRGGNVLSSPALTG 382 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 +S + S G ++ + + I + Sbjct: 383 ATVLSGSATA-GGAEVLSSGFSAGPPADTITVNGQTLTFMASGASGPNQINITDNITTLL 441 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + T + + + + + Sbjct: 442 GKIDALSGASGSSISPGGVITLNTGTVSNLSVSSSNSAAFAALGFTSTITKNRDGGGTAG 501 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + + P+ + ++ S L + Sbjct: 502 TGGVIGNDIATFTKESISGGAVTAYNAAGTPVNLQLRWAKTDSASLGTGHSDTWNLFYQT 561 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ + + + ++ G + L + S + Sbjct: 562 DPNATGTTVGWVNTGQAFTFAADGSLTSPSGSGITINNVSVGGQALGSVAFNISSGGLTQ 621 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + ++ + + N + ++ N L Sbjct: 622 YASTSGAVTINTITQNGYAAGQLRSVAVNNNGLVVGTFSNGQNLDLAQVSLSHFNGTNYL 681 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + IS S ++ +E + LI +Q+Y+ Sbjct: 682 K-------ALDGGAYAATEQSGPAIDGASGTISGSSLEGSNTDIADEFTKLIVTQQAYSA 734 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 + K+I + M+Q LL ++ Sbjct: 735 NTKVITTANSMVQDLLNVLR 754 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/431 (8%), Positives = 85/431 (19%), Gaps = 20/431 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52 M + N + S +I NI N+ Y T + Sbjct: 1 MGIFDAMNTSVGGLQAQSYALQNISGNIANSSTTGYKGIGTSFVDLIPDASVPSKQVAGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108 VT ++ + + S A F ++++ S D+ + + Sbjct: 61 VTANAKATITTQGTISSSSVATNMAITGDGFFSIQKATSVVDNLPQFGGVTYYTRRGDFQ 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-----AREVQKIRADADKEIELEISNL 163 + N + L +D Q + + + + + Sbjct: 121 LNSNGNLVNGAGYYLMGVTVDPKTGNPQGNVATVLKFQNNFIPAQATTSIQYAANLPTQP 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S + + D + N ++ Sbjct: 181 NTAASSTAASKTLLAAGGLNPSDFQANPLPVGTPPAPYTSATVSGAAATGNIRSAYSSTT 240 Query: 224 GT---TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 GT L + TV + + + + + Sbjct: 241 GTGTVPLQNNSSAVASTSTSLDNTVGTHLASSILTALSGQVLTINGSNTITFNGGTTVST 300 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + + G + I Sbjct: 301 VGNNTTIGLGAGTTATVASILNAIQTAGGAGVTASLSASGNIQISTGTGTDVSIGSGTAA 360 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 S+ + + S V + + F+ D + +T Sbjct: 361 TALGISSVTRGGNVLSSPALTGATVLSGSATAGGAEVLSSGFSAGPPADTITVNGQTLTF 420 Query: 401 LEYARNSIGWL 411 + + + Sbjct: 421 MASGASGPNQI 431 >gi|289679027|ref|ZP_06499917.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 377 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 53/246 (21%), Gaps = 16/246 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN A + + A+++ NI N + + + + + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 66 VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + G+ + + ++ + Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 L ++ E+ D +I+ R + +N + Sbjct: 122 RLQGYAANDKGEIASGIR------------TDLQIDTSNVGARATTTVAETINLDASLPS 169 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 ++ D D I + D + T + + N Sbjct: 170 LARLPTFDPDDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRN 229 Query: 242 SYTVTS 247 S Sbjct: 230 PVDPDS 235 >gi|323492336|ref|ZP_08097489.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323313383|gb|EGA66494.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 261 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNTQNTSQQYDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S + +A L N + E Sbjct: 137 EPQIQIPDNALSLSVGVDGTVTATTVDSSTPEQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGQADELTAGEDGVGIIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 31/153 (20%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + S + Q F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTSQQYDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + E N L + + Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNAL 147 >gi|82702455|ref|YP_412021.1| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196] gi|82410520|gb|ABB74629.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ + + F D + S Q ++ + Sbjct: 76 ATEHIFTQGNLQQTGNSKDVAIQGQGFFQVLRPDGSTAYTRDGSFQTDFEGQLVTSSGYH 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 ++ + + +A L N ++ Sbjct: 136 VQPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQLATFINPAGLQSVGENL--YV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + ++ +++ Y T VN+ EEL +I+ +++Y I++K + +D+M Sbjct: 194 ETASSGTPNVTNPGTDGAGLLNQGYVETSNVNVVEELVNMIQTQRAYEINSKSVQTSDQM 253 Query: 472 LQTLLEG 478 LQ L + Sbjct: 254 LQRLTQL 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 50/234 (21%), Gaps = 31/234 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ Q F + ++ Sbjct: 61 QLPSGLQLGTGVRPVATEHIFTQGNLQQTGNSKDVAIQGQGFFQVL------RPDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E S + V + Q Sbjct: 115 TRDGSFQTDFEGQLVTSSGYHVQPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQ 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211 + + + N ++ ++ + + D +L Q E ++ + Sbjct: 175 LATFINPAGLQSVGENLYVETASSGTPNVTNPGTDGAGLLNQGYVETSNVNVVE 228 >gi|158604896|gb|ABW74721.1| flagellar hook protein [Campylobacter concisus 13826] Length = 533 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 56/533 (10%), Positives = 125/533 (23%), Gaps = 55/533 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------TISPENVTVVT 54 ++ F + S NI N +N + + T Sbjct: 1 MMRGFYNGVSGIKTQSFGMDVWSNNISNINNVGFKASIPEFKNLINQNLVSAGSGPTSDQ 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + ++ S D + Sbjct: 61 VGLGATKQTTALDMSNGSFQSTDNNFDLAIGGDGFFGVVDKTGKNYYTRTGTFDIDAAGN 120 Query: 115 SKNLSEDILGKTVIDN---------------------AEEVVQNFNTSAREVQKIRADAD 153 + ++L T+ + A V Q + + Sbjct: 121 LVDTRGNLLLGTLANFTPTTPSATALKKYGQTSSAPQAYTVSQEELSLGDPGSQKGITLP 180 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV-- 211 + + + + + I K + DA + D + IS I Sbjct: 181 HFLFMPAEATTNISLKGNLNSTRITDKKTTALDASQYAYTLDNTNKTISLNGQIPLSTTS 240 Query: 212 ----------------RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 T + ++ + + F + V SE + Sbjct: 241 LGAKAGDSVVVKVKDGDGKFSEFSTTLEVDGTWQINDKSLKFMDFANLEVNSEVTSLVEV 300 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----NS 311 G + +P +Q A I S Sbjct: 301 PNKEKLTSDIYNADGTKSLITINLTKQIPQTGDQTIWDAVATITDASGAVQNTAMGSLTF 360 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---SVSKKFLWNVKNL 368 L L V S+ + +D + L + ++ Sbjct: 361 NGSGRLVTNTLTSVGGVNLNFEGDGDADVYNGMTSSANARKDFNIKRDGYAEGLLSKYSV 420 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 +++ ++ ++ + + + + N + + + V Sbjct: 421 DDRGNIMANFDNTRAFPVAKVALYHFINDQGVAKVGDNLYEATANSGEPFFYKNKAGETV 480 Query: 429 FN-HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + I + V+L + LS +I +++Y S K I +D+M+QT ++ K Sbjct: 481 YGAQILANKLEMSNVDLGQALSEVIVTQKAYEASAKSITTSDEMIQTAIQMKK 533 >gi|219685570|ref|ZP_03540386.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] gi|219672848|gb|EED29871.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] Length = 265 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEITGIPGSEGMGILRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + +I N+ N + + + TQ Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89 + L + +G + + + + E Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83 >gi|224370760|ref|YP_002604924.1| flagellar basal body rod protein FlgG [Desulfobacterium autotrophicum HRM2] gi|223693477|gb|ACN16760.1| FlgG2 [Desulfobacterium autotrophicum HRM2] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 52/175 (29%), Gaps = 2/175 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + V + D +L + + + S R + Sbjct: 80 IFTQGDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFTLDSEGFITTNSGDRLQPEI 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S + +L L D ++ L N + + S Sbjct: 140 SIPVEATLISLQDNGTLTVTGADDTILATEQVNLSSFVNPAGLFAVGENL--FRQTEGSG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + ++ ++ V++ EE+ +I +++Y ++K I D ML Sbjct: 198 PATEGIPGDAPLGTVANNFLEMSNVSVVEEMVNMIVGQRAYEANSKSIQTADTML 252 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 26/136 (19%), Gaps = 14/136 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV 50 ++ + N Q + N+ N+ + + +P Sbjct: 1 MIRALWTSATGMNAQQIQTDVVANNLANSSTAGFKKSRANFQDLMYQTMLVAGATTPGGG 60 Query: 51 TV--VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + Q Q F + H + Sbjct: 61 QIPTGIQVGMGVRPSGVQKIFTQGDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFT 120 Query: 109 DSLESYSKNLSEDILG 124 E + S D L Sbjct: 121 LDSEGFITTNSGDRLQ 136 >gi|213026919|ref|ZP_03341366.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 149 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 2/151 (1%) Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + S + N Q + F ++ + + Sbjct: 1 SAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVG 60 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + + L N ++E S + + + + Y T VN+ EE Sbjct: 61 QLNLTTFMNDTGLESIGENL--YIETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEE 118 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 L +I+V+++Y I++K + TD+MLQ L + Sbjct: 119 LVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 149 >gi|121607559|ref|YP_995366.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] gi|121552199|gb|ABM56348.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 2/179 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + ++ + F + D + S + + + G Sbjct: 81 FVQGSLQESRNNLDVAINGNGFFQVMLPDGSLGYTRDGSFQVDAQGRLVTANGLPVANGI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +V A + +A L +N + E S Sbjct: 141 TIAANAISVSISAEGAVSAIMPGSVQPQPLGNLAMASFINPAGLEPIGQNL--FKESAAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + I + + +N+ EEL +I+ +++Y +++K I +D+ML L Sbjct: 199 GQPQQGIPGSNGLGVIKQGFLEASNINIVEELVTMIQTQRAYEMNSKAIQTSDQMLAKL 257 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 33/177 (18%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q I N+ N Y R + M Sbjct: 1 MIDALWIAKTGMSAQQTQLDVIAHNLANVSTTGYKRSNAMFEDLIYQNLRQVGANSTEQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L + + F + + Sbjct: 61 QLPTGLQLGLGVRTVATSRC---FVQGSLQESRNNLDVAINGNGFFQVM------LPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + + A + + + + + Sbjct: 112 LGYTRDGSFQVDAQGRLVTANGLPVANGITIAANAISVSISAEGAVSAIMPGSVQPQ 168 >gi|330880522|gb|EGH14671.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 390 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 38/429 (8%), Positives = 80/429 (18%), Gaps = 46/429 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + G L + E Y N Sbjct: 62 TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + R ++NL + ++ Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + N T D T+ + Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N++++ S + I ++ + + L+ VP + Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + V + I + Q S + Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ +L Y + ++ + L + W E S Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381 Query: 420 DLHMKSQVV 428 Sbjct: 382 VSGTPQSGT 390 >gi|323697472|ref|ZP_08109384.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. ND132] gi|323457404|gb|EGB13269.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans ND132] Length = 260 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 2/182 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + + +++ + + Sbjct: 81 FTQGDFQNTGNPLDMAIEGEGFFQVMVNGDEVYTRDGSFELDSDGRVVTAGGYPLQPEFT 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + +++ + D + L+ RN + E + S Sbjct: 141 VPPETSSISISETGTISALDKDGTVLATADIDLYRFQNPAGLIATGRNF--YRESDASGV 198 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I++ + V + +E+ LI ++++ I++K I +D MLQT + Sbjct: 199 AVAGTPGDDNYGTIAQGFLEGSNVEMVDEMVGLIVGQRAFEINSKAITTSDGMLQTAINI 258 Query: 479 VK 480 + Sbjct: 259 KR 260 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 8/162 (4%), Positives = 29/162 (17%), Gaps = 28/162 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + Q ++ N+ N + + Sbjct: 1 MMRSLWTSATGMIAMQTQIDTLSNNLANVSTTAFKKSRAEFEDLMYQTLKIAGGENADGT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + + +K + + + F + + Sbjct: 61 QTPVGMQIGMGVRPVSVHKFFTQGDFQNTGNPLDMAIEGEGFFQVM-------VNGDEVY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + L E + + + Sbjct: 114 TRDGSFELDSDGRVVTAGGYPLQPEFTVPPETSSISISETGT 155 >gi|153011524|ref|YP_001372738.1| flagellar basal body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] gi|151563412|gb|ABS16909.1| flagellar basal-body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R + Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFSDLLYQSERTAGVPNQANQSIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHMQGSFNQTGNPFDLALTGKGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + V + + K++ ++ ++ Sbjct: 114 YARAGAFNKNADGQLVTLDGNPVEPAITIPPDAVEVTVTDTGQVFAKLQDQVNQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 56/215 (26%), Gaps = 8/215 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + + + + + + N L + Sbjct: 41 SDLLYQSERTAGVPNQANQSIVPEGALVGLGVQTAAVRNLHMQGSFNQTGNPFDLALTGK 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 ++ + G+ + + + + Sbjct: 101 GWFQIQSPTGETLYARAGAFNKNADGQLVTLDGNPVEPAITIPPDAVEVTVTDTGQVFAK 160 Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 ++ + +A L N + E S + + + I + Y Sbjct: 161 LQDQVNQVDLGQLTLANFTNEAGLEPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 V+ +E++ LI +++Y +++K+I D+M Sbjct: 219 LEASNVDPVKEITDLITAQRAYEMNSKVIQAADEM 253 >gi|66046704|ref|YP_236545.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae B728a] gi|63257411|gb|AAY38507.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 248 ISTADQMLQNLTQ 260 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 15/243 (6%), Positives = 47/243 (19%), Gaps = 30/243 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ +I N+ N + + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T N L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158 + L ++ T + + A + Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ++ + + +S + + + + + Sbjct: 175 QTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234 Query: 219 VYT 221 + T Sbjct: 235 ITT 237 >gi|86146153|ref|ZP_01064479.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218708806|ref|YP_002416427.1| flagellar basal body rod protein FlgG [Vibrio splendidus LGP32] gi|85836100|gb|EAQ54232.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218321825|emb|CAV17796.1| Flagellar basal-body rod protein flgG [Vibrio splendidus LGP32] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 66/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ + + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ + ++ + + ++ + Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGQQDNV 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + ++ +S VN+ Sbjct: 170 VVGQITITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLNGLGNVRQSMLEASNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISAVDKMM 255 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 11/203 (5%), Positives = 40/203 (19%), Gaps = 19/203 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA + + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + I E+ V N + ++ + + + Sbjct: 121 TLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGQQDNVVVGQITITDFV 180 Query: 164 RRFLSELTVVNDAIKFKTASKHD 186 E N + + Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQ 203 >gi|95929874|ref|ZP_01312615.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] gi|95134170|gb|EAT15828.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 2/215 (0%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 S P A + ++ + +V + + F + Sbjct: 49 SKTPGSSTSADTVSPTGIQVGLGSRTAAVQKVFSTGDMMQTENELDLAIEGRGFFQVEMP 108 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + + + + ++ +L V + ++ + +S + Sbjct: 109 DGTTAYTRSGALKKDGDGRLTTSEGYLLTPQIVIPENTTSISIGQDGTVDVFLDGESTST 168 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A + L RN E S + + + +S+ Y V++ Sbjct: 169 EIGVIEMAIFSNESGLRSLGRNLFA--ETLSSGVANTGIPGENGLGTLSQGYLEGSNVSV 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EE+ +I +++Y +++K I D+MLQ + Sbjct: 227 MEEMVNMIAGQRAYEVNSKAIQTADEMLQMTNNLI 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/162 (6%), Positives = 33/162 (20%), Gaps = 27/162 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A ++ I N+ N + + + Sbjct: 1 MIRALWTAATGMDSQQTNIDVIANNLANVNTSGFKKSRADFQELLYQVSKTPGSSTSADT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V K + + + + F ++ + Sbjct: 61 VSPTGIQVGLGSRTAAVQKVFSTGDMMQTENELDLAIEGRGFFQVE------MPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 L+ + +L ++ + Sbjct: 115 TRSGALKKDGDGRLTTSEGYLLTPQIVIPENTTSISIGQDGT 156 >gi|28869144|ref|NP_791763.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71735047|ref|YP_275559.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967579|ref|ZP_03395727.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|257484944|ref|ZP_05638985.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627766|ref|ZP_06460720.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651643|ref|ZP_06482986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 2250] gi|298487853|ref|ZP_07005893.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385716|ref|ZP_07234134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato Max13] gi|302060071|ref|ZP_07251612.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato K40] gi|302134830|ref|ZP_07260820.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185580|ref|ZP_07262253.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae 642] gi|28852384|gb|AAO55458.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71555600|gb|AAZ34811.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213927880|gb|EEB61427.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|298157578|gb|EFH98658.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325096|gb|EFW81165.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. B076] gi|320329355|gb|EFW85348.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330866425|gb|EGH01134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880529|gb|EGH14678.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330986471|gb|EGH84574.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011045|gb|EGH91101.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017022|gb|EGH97078.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 248 ISTADQMLQNLTQ 260 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/243 (6%), Positives = 47/243 (19%), Gaps = 30/243 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ +I N+ N + + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T N L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTVAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158 + L ++ T + + A + Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ++ + + +S + + + + + Sbjct: 175 QTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234 Query: 219 VYT 221 + T Sbjct: 235 ITT 237 >gi|315637964|ref|ZP_07893150.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] gi|315481999|gb|EFU72617.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] Length = 263 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 2/181 (1%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S+ + + F + D + T + + Sbjct: 85 SYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQFTRDNEGNVVNADGYRLIPEMTVP 144 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N+ + + + L N +LE S + Sbjct: 145 EGATNISIAKDGTVSVMLAGEQEETQIGQIELVQFINPAGLHSMGDNL--YLETGASGAP 202 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + Q +I + V L EE++ LI +++Y +K I +D+ML + + Sbjct: 203 VAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDEMLGIVNQLK 262 Query: 480 K 480 + Sbjct: 263 R 263 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 16/208 (7%), Positives = 39/208 (18%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAI-GQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + S+ F ++ + Sbjct: 61 LSPSGIEVGLGVRPTAVTKVFTPGSYKSTSTDSFDMAIEGNGFFQIQ------LPDGTTA 114 Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + E N L + T + + + + Sbjct: 115 YTRNGQFTRDNEGNVVNADGYRLIPEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQI 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|306846278|ref|ZP_07478839.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] gi|306273273|gb|EFM55142.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] Length = 262 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + + + K++ ++ ++ Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 65 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S S + + + I + Y V+ +E++ LI +++Y + Sbjct: 185 EPLGGNL--YRETEASGSPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 243 NSKVIQAADEM 253 >gi|114320059|ref|YP_741742.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] gi|114226453|gb|ABI56252.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 2/167 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F + D + + S + Q ++ + +V Sbjct: 91 NSLDIAIEGDGFFQILMPDGEIAYSRDGSFNVDDQGQMVTSSGYQLQPPINIPDDAVSVT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +A L N + E S + Sbjct: 151 IGRDGTVSARLPGQADPQQLGNIQLADFINPAGLDAMGGNL--FRETAASGPPQISDPGL 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + + VN+ EEL +I+ ++++ + K I TD+MLQ Sbjct: 209 DGVGTLLQGALESSNVNIAEELVNMIETQRAFETNTKAISSTDQMLQ 255 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 34/183 (18%), Gaps = 33/183 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + N+ N + + + Sbjct: 1 MNPALWVAKTGLDAQQTRMQVVSNNLANVNTTGFKKDRANFEDLIYQTVRQAGGQSTQDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + + +++ F + Sbjct: 61 LLPTGLNLGTGVRVTSTEKIH---MQGNIQQTENSLDIAIEGDGFFQIL------MPDGE 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + S L + + V ++ AD + Sbjct: 112 IAYSRDGSFNVDDQGQMVTSSGYQLQPPINIPDDAVSVTIGRDGTVSARLPGQADPQQLG 171 Query: 159 EIS 161 I Sbjct: 172 NIQ 174 >gi|57505521|ref|ZP_00371448.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016068|gb|EAL52855.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 263 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 2/181 (1%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S+ + + F + D + T + + Sbjct: 85 SYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQFTRDNEGNVVNADGYRLIPEMTVP 144 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + N+ + + + L N +LE S + Sbjct: 145 EGATNISIAKDGTVSVMLAGEQEETQIGQIELVQFINPAGLHSMGDNL--YLETGASGAP 202 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + Q +I + V L EE++ LI +++Y +K I +D+ML + + Sbjct: 203 VAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDEMLGIVNQLK 262 Query: 480 K 480 + Sbjct: 263 R 263 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 16/208 (7%), Positives = 39/208 (18%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAI-GQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + S+ F ++ + Sbjct: 61 LSPSGIEVGLGVRPTAVTKIFTPGSYKSTSTDSFDMAIEGNGFFQIQ------LPDGTTA 114 Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + E N L + T + + + + Sbjct: 115 YTRNGQFTRDNEGNVVNADGYRLIPEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQI 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|331005445|ref|ZP_08328824.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] gi|330420721|gb|EGG95008.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] Length = 400 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 30/345 (8%), Positives = 87/345 (25%), Gaps = 5/345 (1%) Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195 + + V ++ I + + + D Sbjct: 59 TSAQQNGAGVTDAGTITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFD 118 Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 S +G + ++ +V + + ++ + Sbjct: 119 SDGFLSSTSLGSRVAGIDASNNLVDININQFNASPAVATSEIVFSGILSTNDTTHQVTDV 178 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 ++ +S + S + NQ + + Sbjct: 179 NLIDTSGSTESYSLTFTDNTAVTSGSWLIDVNNQAGTLIAD--DLEIRFSGDSTPQAGFN 236 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + + K S T + + + D + N+ L Sbjct: 237 EVNFVHNTNTVTLKFGDAGSITGATSLSSGAASTLAVDSQDGLALGSFLDVNIGADGVLE 296 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 Y + + +A + ++ + + + S +F + Sbjct: 297 ASYSNGETADVGQLALAWFSDLQSMRQIGNGI---FLVSNEQQPIIGKGSSDIFGDLVGG 353 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V L +E + LI +++ + S++++ +++M+Q LL + Sbjct: 354 SIEISNVELTQEFTDLIIIQRGFQASSQIMSASNEMIQELLSVGR 398 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/317 (10%), Positives = 83/317 (26%), Gaps = 22/317 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------T 44 MS + A S+ +++ N+ N + + R D + T Sbjct: 1 MS-FSTIYTASTGMLTFSKGLSTVSNNVANLNTPGFKRSDLLFRDLFYQFQQSGEMDGQT 59 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + +N VT + + ++ F L+E Sbjct: 60 SAQQNGAGVTDAGTITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFDS 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S S+ D V N + + + E+ + + +++++ Sbjct: 120 DGFLSSTSLGSRVAGIDASNNLVDININQFNASPAVATSEIVFSGILSTNDTTHQVTDVN 179 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDV-----LLQKISEIIGISTIVRNNNDMVV 219 + + + ++ F + + +L + + + + + + V Sbjct: 180 LIDTSGSTESYSLTFTDNTAVTSGSWLIDVNNQAGTLIADDLEIRFSGDSTPQAGFNEVN 239 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + + T+ + S + + S ++ V G L Sbjct: 240 FVHNTNTVTLKFGDAGSITGATSLSSGAASTLAVDSQDGLALGSFLDVNIGADGVLEASY 299 Query: 280 DSVVPIFQNQLDEMARV 296 + QL Sbjct: 300 SNGETADVGQLALAWFS 316 >gi|182412238|ref|YP_001817304.1| hypothetical protein Oter_0414 [Opitutus terrae PB90-1] gi|177839452|gb|ACB73704.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1] Length = 312 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 30/280 (10%), Positives = 67/280 (23%), Gaps = 11/280 (3%) Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 + G T T+ + + I + Sbjct: 32 NTTAYKSSSATYGDTFSNTLRAATATDSAVQIGTGVQVAGISTNFTQGPLVATGNNNDLG 91 Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 I Q + + K+ N N G + Sbjct: 92 ISGRGYFVVQDATGNQFATRDGSFHFDTGGYLKNVQGYNVLNDMGQPVQVSGLKKTYDAT 151 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 ++ S DG + DL + + Sbjct: 152 GVHDGYEPAPYSELASVSIGSDGTITAYATDGTSVLYGRTYDLADTSVPPAPDPVLDPAN 211 Query: 392 AGINTNVT-----------LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +N + L+ A N + + + ++ + I Sbjct: 212 PAVNPTRSIGVMSVSDESRLMRQANNLYNFSATGSTVADNMEVPGVNGTGKIQTGVLEQS 271 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L ++ S LI ++S+ ++LI +D +L+ ++ + Sbjct: 272 NVDLTDQFSNLITTQRSFQAGSRLITVSDSVLEDIVNLKR 311 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 61/280 (21%), Gaps = 30/280 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 M L+ + S+ I NI N + Y + Sbjct: 1 MPLIGTLTSGVSAVRTFSKGLEVIGSNIANVNTTAYKSSSATYGDTFSNTLRAATATDSA 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + N L A + + + +++ N Sbjct: 61 VQIGTGVQVAGI---STNFTQGPLVATGNNNDLGISGRGYFVVQDA------TGNQFATR 111 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 Y KN+ + + + A V A + Sbjct: 112 DGSFHFDTGGYLKNVQGYNVLNDMGQPVQVSGLKKTYDATGVHDGYEPAPYSELASV--- 168 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 S+ T+ A + +D D + + V+ SD Sbjct: 169 -SIGSDGTITAYATDGTSVLYGRTYDLADTSVPPAPDPVLDPANPAVNPTRSIGVMSVSD 227 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 + L NF S + P + + Sbjct: 228 ESRLMRQANNLYNFSATGSTVADNMEVPGVNGTGKIQTGV 267 >gi|153837069|ref|ZP_01989736.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|149749657|gb|EDM60402.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] Length = 261 Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + I ++ Sbjct: 77 TQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTVISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + Q F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + E N L + Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNA 146 >gi|71906393|ref|YP_283980.1| flagellar basal body rod protein FlgG [Dechloromonas aromatica RCB] gi|71846014|gb|AAZ45510.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 260 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 A + +K + F + D + S Q ++ + Sbjct: 76 STAHIFTQGNLQKTDNTLDIAVQGNGFFQILLPDGTTGYTRDGSFQKDNQGQIVTSDGYP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 +V + + +A L +N +L Sbjct: 136 LQPNITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQLATFINPAGLQSAGQNL--FL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + +++ Y T VN+ EEL +I+ +++Y +++K++ +D M Sbjct: 194 ETAASGTPTPNTPGSNGAGIVNQGYVETSNVNVAEELVTMIQTQRAYELNSKVVSTSDAM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LGRLTQL 260 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/211 (7%), Positives = 41/211 (19%), Gaps = 30/211 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIARTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 47 --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L + + F + + Sbjct: 61 QIPTGLQLGTGVRPVSTAHIFTQGNLQKTDNTLDIAVQGNGFFQIL------LPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160 + + L + + + + T A I Sbjct: 115 TRDGSFQKDNQGQIVTSDGYPLQPNITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQ 174 Query: 161 --SNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N ++ + + Sbjct: 175 LATFINPAGLQSAGQNLFLETAASGTPTPNT 205 >gi|330875986|gb|EGH10135.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967093|gb|EGH67353.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. actinidiae str. M302091] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 2/113 (1%) Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 G + + ++ A L N +LE S + + Sbjct: 150 TVGQDGTVSVTLAGATATSQVIGNIQTADFINPAGLQAIGGNL--YLETASSGAPQIGTP 207 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ V+ EEL +I +++Y +++K+I D+MLQ L + Sbjct: 208 GLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 260 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 15/243 (6%), Positives = 49/243 (20%), Gaps = 30/243 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A+ +I N+ N + + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 45 ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T N L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158 + + L ++ T + + A + + Sbjct: 115 SRDGTFHLNSTGQIVTATGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATSQVIGNI 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ++ + + +S + + + + + Sbjct: 175 QTADFINPAGLQAIGGNLYLETASSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234 Query: 219 VYT 221 + T Sbjct: 235 ITT 237 >gi|307748585|gb|ADN91855.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1] Length = 690 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 31/432 (7%), Positives = 90/432 (20%), Gaps = 43/432 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D + Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ ++ + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + S L S + +K + + + + + Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + ++ + G L + I T +N + ++ + Q Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 D + + Q + I + +K+ D Sbjct: 290 ANQKVNLDITLNGVRIQNANIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 +++ N + + + + + V + N+ + + Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNNTGNGQAGTPTINKNG 407 Query: 393 GINTNVTLLEYA 404 T + +A Sbjct: 408 SSLWTATNITFA 419 >gi|144897832|emb|CAM74696.1| flagellar basal body distal rod protein; FlgG [Magnetospirillum gryphiswaldense MSR-1] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 2/173 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + ++ + D + S + Q ++ + G + Sbjct: 91 NTLDVAIQGKGYLQIRLPSGDTAYTRDGSFQLSEAGQIVTHEGYTVLPGITVPNNAVGIS 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 A ++ +A L N +LE S Sbjct: 151 INASGQVMVKVDGSIDQTVVGQLQLANFANEAGLEARGDNL--FLETPASGGVLAGNPGS 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + T VN+ E++ LI +++Y +++K+I +D+M+ T+ + Sbjct: 209 PGYGTLLQGFLETSNVNVVAEVTNLISAQRAYEMNSKVIQTSDEMMSTINQLK 261 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 N A I NI N + Y +R + Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAYTKRRPEFSDLLYQNLRRVGAASSDAGTIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + + ++ Sbjct: 63 PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDVAIQGKGYLQI------RLPSGDTA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S + + V + N S + + K+ D+ + ++ Sbjct: 114 YTRDGSFQLSEAGQIVTHEGYTVLPGITVPNNAVGISINASGQVMVKVDGSIDQTVVGQL 173 Query: 161 SNLR 164 Sbjct: 174 QLAN 177 >gi|117919774|ref|YP_868966.1| flagellar basal body rod protein FlgG [Shewanella sp. ANA-3] gi|117612106|gb|ABK47560.1| flagellar basal-body rod protein FlgG [Shewanella sp. ANA-3] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTPGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E+ ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVS 159 >gi|149184209|ref|ZP_01862527.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] gi|148831529|gb|EDL49962.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] Length = 243 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 2/184 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++V+ A + + + + + T+ Q + Sbjct: 55 AVQSTSQVMTQGALSTTSNAFDLALDGDGYFQIEMPGGRIGYTRAGNFTLSAEGQLVTQQ 114 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + ++ +A L N + Sbjct: 115 GYSVQPAITVPEGATAIAVSPDGTVSATLPGEAGPAELGQIQIARFTNPSGLQAIGDNFL 174 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +E S + +L + +I + + VN+ EEL +I+ +++Y IS+K+I Sbjct: 175 --VETAASGAPELAPGGENGRGNIRQGMLESSNVNIVEELVEMIECQRAYEISSKMISAV 232 Query: 469 DKML 472 D+ML Sbjct: 233 DEML 236 Score = 40.4 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 23/125 (18%), Gaps = 27/125 (21%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPEN---------------------VTVVTQRSEN 59 I N+ N + R T V +S + Sbjct: 1 MRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQRSSAETAYATGLNLGTGVAVQSTS 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + M L S+A + ++ S E Sbjct: 61 QVMTQGALSTTSNAFDLALDGDGYFQIE------MPGGRIGYTRAGNFTLSAEGQLVTQQ 114 Query: 120 EDILG 124 + Sbjct: 115 GYSVQ 119 >gi|170748107|ref|YP_001754367.1| flagellar basal body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170654629|gb|ACB23684.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 58/178 (32%), Gaps = 2/178 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + + + S + + + + D + + Sbjct: 87 NNTTNPLDLAINGRGWFQVTMPNGEINYTRAGSFNKNADGRLVTAEGYSVDPAIIIPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +V ++ + +A + L + E S Sbjct: 147 IDVVINETGQVMVKVDGQQLPQTIGQLQLANFTNDAGLEPLGNGL--YRETAASGLPVTG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F I + Y T V+ E++ LI ++++ +++K+I D+M T+ +G++ Sbjct: 205 FAADPGFGKIQQGYLETSNVDPVREITNLISAQRAFEMNSKVIQAADEMAGTISKGIR 262 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 35/183 (19%), Gaps = 28/183 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT----- 54 A N I NI N + + P V + Sbjct: 3 ALAIAATGMNAQQLNVEVIANNISNLNTTAFKAARAEFKDLIYQAERPAGVPIQAGESAI 62 Query: 55 -----------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + L+ ++ + + + + Sbjct: 63 PEGAMLGLGVRNTAIRNLHRQGPLNNTTNPLDLAINGRGWFQV------TMPNGEINYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + +I + N + + + K+ + ++ Sbjct: 117 AGSFNKNADGRLVTAEGYSVDPAIIIPQNAIDVVINETGQVMVKVDGQQLPQTIGQLQLA 176 Query: 164 RRF 166 Sbjct: 177 NFT 179 >gi|163758015|ref|ZP_02165103.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284304|gb|EDQ34587.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 18/239 (7%), Positives = 54/239 (22%), Gaps = 30/239 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 A N I N+ N + + R V Sbjct: 3 ALAIAATGMNAQQLNLEVIANNVANINTTGFKRARAEFADLLYQVERNQGVPNASNQAIV 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + L S+ + + + ++ + Sbjct: 63 PEGAHIGLGVQTSAVRNLHIQGSLVGTSNKFDLALVGRGWFQIE------TPDGETNYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + ++ E + + + +I +A+ + +++ Sbjct: 117 AGAFNTNADGELVTIDGYTVVPGIVFPDEASEVVISRTGQVFARIGNEAEMQELGQLTLA 176 Query: 164 R--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + ++ + TAS D + + G + ++ Sbjct: 177 NFVNEAGLEPLGDNLFRETTASGPANVGVPDDPGFAHIQQGYLEGSNVDPIKEITDLIS 235 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 6/173 (3%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + +++ L + + N + V + Sbjct: 87 VGTSNKFDLALVGRGWFQIETPDGETNYTRAGAFNTNADGELVTIDGYTVVPGIVFPDEA 146 Query: 367 NLAGYPDLINHYC----DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + ++ + +A L N + E S ++ Sbjct: 147 SEVVISRTGQVFARIGNEAEMQELGQLTLANFVNEAGLEPLGDNL--FRETTASGPANVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + F HI + Y V+ +E++ LI +++Y +++K+I D+M T+ Sbjct: 205 VPDDPGFAHIQQGYLEGSNVDPIKEITDLISAQRAYEMNSKIIQAADEMASTV 257 >gi|316932790|ref|YP_004107772.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] gi|315600504|gb|ADU43039.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] Length = 616 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 7/211 (3%) Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G + + + + +FS + V + L N Sbjct: 413 GGTDTWNLFYQTNPNATGSDVAWVNVGTNFTFSSTGQMQPVVGQVTLPGVTVNGISLGNL 472 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + + N + +++ ++ Y + N + Sbjct: 473 TMAIGTGGLTQFSDSNGNVQVNQLKQDGYAAGQLVSVSVSNQGRVVGSYSNGRNIDLAEV 532 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 VA N L +++ IS + + ++ +E + Sbjct: 533 SVATFNGANFLKRI-------DGGAFETTNESGEALFGKGGSISGASLESSNTDIADEFT 585 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +Q+Y+ + K+I + M+Q LL ++ Sbjct: 586 KLIVTQQAYSANTKVITTANTMVQDLLNVMR 616 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/453 (8%), Positives = 94/453 (20%), Gaps = 22/453 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55 M + + S +I NI N+ + R DT + Sbjct: 1 MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNNQQLAGSV 60 Query: 56 RSEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRD 109 +E+ N + + + + + F +++ S D+ + Sbjct: 61 NAESRLTNTLTGSVQSAAVSTYMAINGEGFFVVQKPASFTDNNPIFAGVNNYTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID + + + ++ + +I S Sbjct: 121 DKNGYLVNGAGYYLQGVPIDPSTGNPAG--SVPQILKFQNDFLPSQATTKIDYRANLASY 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + DF+ L + S + + T Sbjct: 179 PLTTKANKSVVGSELLRPADFVSNPRPLGTPAAPYTNTSILGSARTNFQTPAVAVTGATL 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 +T + G V + + + D+ Sbjct: 239 LKSASGTDSLQAGFTASDTITVKTTTGGVTTDKTVAFYDSSAGGSAGSAPDTAYVDLNGG 298 Query: 290 LDEMARVLIGS---------FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 I + + + + + Sbjct: 299 SISTLLAAIDGLTGNAAPNLSNVASGVVTINSGLANDIQLSSSSSTAWNALGFTGTITAL 358 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + G ++ A N S + A + T Sbjct: 359 RGGGGTAGTGVVIGSDNQTFLDESIAGGALTAYDGNGAPVSLQFRWAKVASAAVGGTDTW 418 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + + + + + + Sbjct: 419 NLFYQTNPNATGSDVAWVNVGTNFTFSSTGQMQ 451 >gi|260774940|ref|ZP_05883841.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260609195|gb|EEX35353.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ +V ++ + + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399 ++ + ++ + ++ + + Sbjct: 125 EGVVVTSGAGYPLEPEIAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIATVDFVNPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N +L S + F I +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I DKM+ Sbjct: 243 MNSKVISAVDKMM 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + V+ + + + + Sbjct: 121 TVNDEGVVVTSGAGYPLEPEIAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIATVDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229 >gi|28900124|ref|NP_799779.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365774|ref|ZP_05778270.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260880696|ref|ZP_05893051.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260897698|ref|ZP_05906194.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260899391|ref|ZP_05907786.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|28808407|dbj|BAC61612.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086222|gb|EFO35917.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308092230|gb|EFO41925.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308109302|gb|EFO46842.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115005|gb|EFO52545.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328470103|gb|EGF41014.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + I ++ Sbjct: 77 TQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 31/152 (20%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + Q F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + E N L + Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNA 146 >gi|260772276|ref|ZP_05881192.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] gi|260611415|gb|EEX36618.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] Length = 189 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 57/184 (30%), Gaps = 3/184 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + +V + + + F + D + + T+ ++ + Sbjct: 1 MVATQKVHTNGNVQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNAEGAIVTSGA 60 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYARNSI 408 + + ++ N+ + L +N Sbjct: 61 GYLVQPEIVVPEDAISITVGNDGEVSVRLRGQQENQVLGQITIVDFINPGGLEPVGQNL- 119 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +L S + +I +S + VN+ EEL +I+ ++ Y +++K+I Sbjct: 120 -YLPTGASGDPQEGVPGLDGLGNIRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISSV 178 Query: 469 DKML 472 D+M+ Sbjct: 179 DQMM 182 >gi|188592119|ref|YP_001796717.1| flagellar basal body rod protein flgg [Cupriavidus taiwanensis LMG 19424] gi|170938493|emb|CAP63480.1| FlgG: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG 19424] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ A + + F + D + S + N Q ++ F+ Sbjct: 82 TQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + S N +A L N +++ + S Sbjct: 142 IPANTLSMTIGRDGTVSVTQPGSSANVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + ++Y VN+ EEL +I+ +++Y I++K + +D+MLQ L + Sbjct: 200 APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQASDQMLQRLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60 Query: 45 ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + +A L Q F + Sbjct: 61 TLPSGMQLGTGVRPVATERIH---TQGNPQQTGNAKDVAILGQGFFQVA------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + S ++ + A + Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGFVIQPAITIPANTL 147 >gi|320179221|gb|EFW54179.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905] Length = 156 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 2/158 (1%) Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + D + + S + N Q + F ++ + Sbjct: 1 MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQ 60 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + L N E S + + + + Y T Sbjct: 61 AAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGAPNESTPGLNGAGLLYQGYVETS 118 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 119 NVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 156 >gi|254521223|ref|ZP_05133278.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] gi|219718814|gb|EED37339.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] Length = 257 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 2/211 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G A Q+ + ++ A+ ++ A + F + D Sbjct: 47 QPGGSSSAQTQLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDG 106 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + S I + + +N + G + +V + + + Sbjct: 107 SSAYTRDGSFKINQDSELVTNSGYPVQPGIQIPEGAQSVTIGTDGTISVKMADGAASVEV 166 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N +LE S + + VN+ E Sbjct: 167 GALTLTDFVNPAGLQARGENL--FLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVE 224 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EL +I+ +++Y ++ K I TD ML L Sbjct: 225 ELVSMIETQRAYEMNAKAISTTDSMLGYLNN 255 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 15/133 (11%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVTQRSE 58 A+ + + + + N+ N + + + + + TQ Sbjct: 1 MWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQTQLPT 60 Query: 59 NKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADD---HYNNSPTHYISKLRDSL 111 + V ++ GQQ+ ++ + + + +S + + Sbjct: 61 GLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSFKINQ 120 Query: 112 ESYSKNLSEDILG 124 +S S + Sbjct: 121 DSELVTNSGYPVQ 133 >gi|153831580|ref|ZP_01984247.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156976143|ref|YP_001447049.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116] gi|269960118|ref|ZP_06174494.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] gi|148872090|gb|EDL70907.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156527737|gb|ABU72822.1| hypothetical protein VIBHAR_04914 [Vibrio harveyi ATCC BAA-1116] gi|269835089|gb|EEZ89172.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + I ++ Sbjct: 77 TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGPADELIAGEDGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 13/180 (7%), Positives = 38/180 (21%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + Q F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E N L + + + D + +I+ Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQIT 174 >gi|260574401|ref|ZP_05842405.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] gi|259023297|gb|EEW26589.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 4/209 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + +D + QL R S + L I Sbjct: 52 GTVSAQDGTILPTGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEVTLPSGA 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + T + + + G + + + ++ + + + G Sbjct: 112 SAYTRDGALKRTGDGLIVTSEGHQVAPGITIPADARSLSINADGEVYAYFVDQVQPSLLG 171 Query: 394 INTNVTLLEY----ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 V A S +LE S + + Q + + Y V+ E++ Sbjct: 172 QLNLVGFTNEKGLEAIGSNLFLESPASGAAIVGTPGQDGLGTLRQGYLEESSVDAVREVT 231 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LIK ++ Y ++ K+I D+ML + Sbjct: 232 ELIKAQRGYELNAKVITAADQMLSATTQL 260 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/151 (8%), Positives = 28/151 (18%), Gaps = 28/151 (18%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------- 45 A + + + N+ N Y R Sbjct: 2 NALQIAASGMAAQQMRVDVVSNNLANMSTTGYNARRADFADLHYQQLARPGTVSAQDGTI 61 Query: 46 SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 P V + + M L + Q + + S Sbjct: 62 LPTGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEV------TLPSGASAYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ + + + + A+ Sbjct: 116 RDGALKRTGDGLIVTSEGHQVAPGITIPADA 146 >gi|254477684|ref|ZP_05091070.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] gi|214031927|gb|EEB72762.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 2/181 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ L + + ++ + + + S ++ F Sbjct: 76 AISIHLAQGALTQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGSLKRSAEGLIVTSDGFT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 NV A + + +AG + L N ++ Sbjct: 136 VSPDITIPADARNVSINADGEVYAYFDETAEGQLMGQLTLAGFSNPKGLEALGSNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + Y V+ E++ LI+ ++ Y ++ K+I D+M Sbjct: 194 ETEASGAATVASPGENGLGTLRQGYLEASSVDAVREVTELIEAQRGYEMNAKVISAVDQM 253 Query: 472 L 472 + Sbjct: 254 M 254 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 31/150 (20%), Gaps = 28/150 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + +I N+ N + Y R Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62 Query: 47 PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + ++ L + + + + + S Sbjct: 63 PTGVQVGLGVRASAISIHLAQGALTQTGNDLDVAIDGKGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ S E + + A+ Sbjct: 117 DGSLKRSAEGLIVTSDGFTVSPDITIPADA 146 >gi|237653581|ref|YP_002889895.1| flagellar basal body rod protein FlgG [Thauera sp. MZ1T] gi|237624828|gb|ACR01518.1| flagellar basal-body rod protein FlgG [Thauera sp. MZ1T] Length = 260 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 68/250 (27%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + + +++ +N + + + ++ Q + S Sbjct: 11 GLDAQQTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQTQISSGLQIGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + +A I + G+ + + D ++ Q Sbjct: 71 GVKPVATERIFTQGTLQQTGGSLDVAVQGNGFFQVAMPDGTTAYTRDGAFQLDSQGNVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + G ++ + + A Sbjct: 131 ASGYTLADNINIPADALSITIGKDGTVSVLQAGQTAPVEIGAIQLATFINSGGLQAAGEN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + E S +++ Y VN+ EEL +I +++Y ++++ I + Sbjct: 191 LFYETASSGVATPTQPGTNGAGVLNQGYVEVSNVNVAEELVSMIVTQRAYELNSRAISTS 250 Query: 469 DKMLQTLLEG 478 D+ML L + Sbjct: 251 DQMLGRLTQL 260 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/262 (8%), Positives = 54/262 (20%), Gaps = 34/262 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 QISSGLQIGTGVKPVATERI---FTQGTLQQTGGSLDVAVQGNGFFQVA------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + S L + A+ + V ++A +E+ Sbjct: 112 TAYTRDGAFQLDSQGNVVTASGYTLADNINIPADAL-SITIGKDGTVSVLQAGQTAPVEI 170 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 L F++ + + Q + + N + + Sbjct: 171 GAIQLATFINSGGLQAAGENLFYETASSGVATPTQPGTNGAGVLNQGYVEVSNVNVAEEL 230 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 V +E R I+ Sbjct: 231 VSMIVTQRAYELNSRAISTSDQ 252 >gi|150395485|ref|YP_001325952.1| flagellar basal body rod protein FlgG [Sinorhizobium medicae WSM419] gi|150027000|gb|ABR59117.1| flagellar basal-body rod protein FlgG [Sinorhizobium medicae WSM419] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A N I NI N + Y R + Sbjct: 3 ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + ++ + Sbjct: 63 PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + V + F +S + + +I D + + ++ Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TVAN 177 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 2/163 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + V + D + + + Q + + G + + Sbjct: 93 YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + ++ D+ + VA L N + + S + + Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTVANFVNEAGLEPMGENL--FRQTPASGDAIVGTPADPG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 F I ++Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 211 FAQIKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253 >gi|146293688|ref|YP_001184112.1| flagellar basal body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145565378|gb|ABP76313.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|319427087|gb|ADV55161.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens 200] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382 D + T+ Q + S +++ ++ ++ + + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/168 (8%), Positives = 35/168 (20%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + I E+ ++ EV A A + Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAEN 168 >gi|116694221|ref|YP_728432.1| flagellar basal body rod protein FlgG [Ralstonia eutropha H16] gi|113528720|emb|CAJ95067.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 2/178 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ A + + F + D + S + N Q ++ F+ Sbjct: 82 TQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + S N +A L N +++ + S Sbjct: 142 IPANTLSMTIARDGTVSVTQPGSSANVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + + ++Y VN+ EEL +I+ +++Y I++K + +D+MLQ L Sbjct: 200 APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQASDQMLQRL 257 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A+ + Q I N+ N + R + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60 Query: 45 ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + +A L Q F + Sbjct: 61 TLPSGMQLGTGVRPVATERIH---TQGNPQQTGNAKDVAILGQGFFQVA------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + S ++ + A + Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGFVIQPAITIPANTL 147 >gi|90577346|ref|ZP_01233157.1| putative flagellar basal-body rod protein [Vibrio angustum S14] gi|90440432|gb|EAS65612.1| putative flagellar basal-body rod protein [Vibrio angustum S14] Length = 261 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + N ++ + D + +A L Sbjct: 130 NGQGLPLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITLAKFINPAGLEAIGG 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + E S + + + V + EE+ +I +++Y ++ K++ Sbjct: 190 NL--YKETQASGQPQEMIAGADGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVV 247 Query: 466 MFTDKML 472 D ML Sbjct: 248 SAADDML 254 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 30/154 (19%), Gaps = 27/154 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + F ++ Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGEVMF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + E N L + E Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQIPEEANT 148 >gi|114046840|ref|YP_737390.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-7] gi|113888282|gb|ABI42333.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-7] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTPGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ ++ L +N S + S I + T V Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E+ ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVS 159 >gi|323495375|ref|ZP_08100452.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323310298|gb|EGA63485.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ +V ++ + + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399 ++ + ++ + ++ + + Sbjct: 125 EGVIVTSGAGYALEPEIAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIATVDFVNPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N +L S + F + +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I DKM+ Sbjct: 243 MNSKVISAVDKMM 255 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + V+ + + + + Sbjct: 121 TVNDEGVIVTSGAGYALEPEIAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIATVDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTE 229 >gi|313894975|ref|ZP_07828534.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 137 str. F0430] gi|320530443|ref|ZP_08031501.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399] gi|312976428|gb|EFR41884.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 137 str. F0430] gi|320137276|gb|EFW29200.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399] Length = 264 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/213 (9%), Positives = 56/213 (26%), Gaps = 12/213 (5%) Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL---------DN 328 R+ + L + + I + Sbjct: 54 ARNGTDSQYPTALQIGLGTRVAATQRIFTQGALQTTDNPTDIGIQGEGFFRVTLPDGSTA 113 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFI 387 G + ++ + DG + + ++G + + + Sbjct: 114 YTRDGTWKLDSNRRMVTTDGYLIADGIQIGENAPSESITISGDGRVSYREAGQTQQQEAG 173 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A L +N ++ + S +++ V + EE Sbjct: 174 QITLARFVNPAGLTSIGKNL--FVVSDASGEAIESTPGLDGTGTLTQGTLEMSNVQIVEE 231 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +I +++Y ++K I +D ML+ + Sbjct: 232 MVEMIISQRAYESNSKAITTSDSMLEIANTLKR 264 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/175 (7%), Positives = 33/175 (18%), Gaps = 14/175 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58 ++ A + + NI N + + Sbjct: 1 MMRALWSAASGMKAQQAHMDIVAHNIANVNTHGGKKVRAEFQDLVYQTLREAGARNGTDS 60 Query: 59 ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + A+ E + S + Sbjct: 61 QYPTALQIGLGTRVAATQRIFTQGALQTTDNPTDIGIQGEGFFRVTLPDGSTAYTRDGTW 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + ++ L I E T + + + +A + + E + Sbjct: 121 KLDSNRRMVTTDGYLIADGIQIGENAPSESITISGDGRVSYREAGQTQQQEAGQI 175 >gi|289612840|emb|CBI60006.1| unnamed protein product [Sordaria macrospora] Length = 135 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 9/129 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + A + A + NI N Y RR T + ++ Sbjct: 1 MGMTGLVDSATAVMRMAQARLDVAAHNIANVATPGYKRRI---------GFADTVAARSE 51 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + A +++ + + + + + R + Sbjct: 52 VALATRIDAAQASLTETGNVLDMAISGDGYFRVRDGERTLYTRQGQFRRDADGALVTPQG 111 Query: 121 DILGKTVID 129 +L ++ Sbjct: 112 YVLQQSGGG 120 >gi|225686012|ref|YP_002733984.1| flagellar basal body rod protein FlgG [Brucella melitensis ATCC 23457] gi|256262865|ref|ZP_05465397.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|225642117|gb|ACO02030.1| flagellar basal-body rod protein FlgG [Brucella melitensis ATCC 23457] gi|263092700|gb|EEZ16909.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|326410335|gb|ADZ67399.1| flagellar basal body rod protein FlgG [Brucella melitensis M28] gi|326553627|gb|ADZ88266.1| flagellar basal body rod protein FlgG [Brucella melitensis M5-90] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + + + K++ ++ ++ Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 65 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 185 EPLGGNL--YRETEASGGALVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 243 NSKVIQAADEM 253 >gi|160876201|ref|YP_001555517.1| flagellar basal body rod protein FlgG [Shewanella baltica OS195] gi|160861723|gb|ABX50257.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS195] gi|315268391|gb|ADT95244.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS678] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGVSASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYLLQPAITIPDNATSITVSAEGEVSVKTPGTAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 33/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53 + ++ + A I N+ NA Y + + V+ Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 54 ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 L + I + ++ EV Sbjct: 121 TLDDTGQIVTPGSGYLLQPAITIPDNATSITVSAEGEVS 159 >gi|262404538|ref|ZP_06081093.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] gi|262349570|gb|EEY98708.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 58/189 (30%), Gaps = 3/189 (1%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ +V ++ + + F + D + + T+ Sbjct: 69 GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403 ++ S R + + ++ + L Sbjct: 129 VTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N +L S + + +S T VN+ EEL +I+ ++ Y +++K Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246 Query: 464 LIMFTDKML 472 +I DKML Sbjct: 247 VISAVDKML 255 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/226 (7%), Positives = 45/226 (19%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57 ++ + A+I N+ NA + + + Sbjct: 4 ALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63 Query: 58 ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 + + + + + Sbjct: 64 SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I E+ + N + V+ + + + + Sbjct: 124 DEGAIVTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229 >gi|219684180|ref|ZP_03539124.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] gi|219672169|gb|EED29222.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] Length = 265 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L N + E S + + + V++ Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEITGIPGSEGMGILRQGILEMSNVSI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML + Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 9/174 (5%), Positives = 33/174 (18%), Gaps = 27/174 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I N+ N + + + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + + + + + F + Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKIL------MPDGTYAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + E + + S + + ++ D E Sbjct: 115 TRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSITISEQGIVSVKTDNSNE 168 >gi|120598234|ref|YP_962808.1| flagellar basal body rod protein FlgG [Shewanella sp. W3-18-1] gi|120558327|gb|ABM24254.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 262 Score = 68.9 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382 D + T+ Q + S +++ ++ ++ + + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/168 (8%), Positives = 35/168 (20%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + I E+ ++ EV A A + Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAEN 168 >gi|332162899|ref|YP_004299476.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604254|emb|CBY25752.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667129|gb|ADZ43773.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863349|emb|CBX73472.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 2/114 (1%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ D+ + + L N + E S + Sbjct: 143 PAGAKDLAIGKDGTVTARLGGDAESAELGQITLVNFVNPAGLEAVGGNM--YKETVASGA 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + F + V + EE+ +I V+++Y ++ K++ D ML Sbjct: 201 AVEGVAGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 17/186 (9%), Positives = 40/186 (21%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + ++ + +I N+ N + + R + Sbjct: 1 MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGAPLDQNN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + K + + Q F ++ Sbjct: 61 ATPNGIQFGSGVKVVGTQ---KQFTVGNIKVTKGDLDVAIAGQGFFQVE------TSDGG 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L + + N L + A ++ DA+ Sbjct: 112 LAYTRAGNLSINADGVLTNAQGLPLIPQIELPAGAKDLAIGKDGTVTARLGGDAESAELG 171 Query: 159 EISNLR 164 +I+ + Sbjct: 172 QITLVN 177 >gi|292489131|ref|YP_003532018.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292900250|ref|YP_003539619.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200098|emb|CBJ47224.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554565|emb|CBA22177.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312173289|emb|CBX81544.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 2/170 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + D + S ++ N Q + + Sbjct: 93 YDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVG 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + +A + L N E S + + Sbjct: 153 EDGIVTATVPGQAAPQQIGQLTLANFINDAGLESLGGNLYA--ETQASGAPNEATPGMDG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y T VN+ EEL +I+V+++Y I++K + +D+MLQ L + Sbjct: 211 AGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAVSASDQMLQRLAQL 260 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/245 (7%), Positives = 52/245 (21%), Gaps = 37/245 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ I N+ N + + R+ + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + L + F ++ Sbjct: 61 TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + + + A+ + A + Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171 Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 +++ L L A + + ++A +D L + E ++ Sbjct: 172 QLTLANFINDAGLESLGGNLYAETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231 Query: 215 NDMVV 219 + V Sbjct: 232 TMIQV 236 >gi|32265682|ref|NP_859714.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32261730|gb|AAP76780.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 745 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/364 (8%), Positives = 93/364 (25%), Gaps = 18/364 (4%) Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 + + + KI ++ I+ N + + Sbjct: 392 GALPEWNDNTTYLEGDIVASEGKIYRRINQAGNNPINEGNWEELGNAESNLPSNYAKDTT 451 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + D ++ L +KI + + N +Y + F +P N Sbjct: 452 YQVGDIVNYDGRLYRKIVDSGSSDPKLDNVGWQQIYGDSFHSDFIQMPSYQT----NVEI 507 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + + G+ + ++ +V + V+ + Sbjct: 508 YDESGKKFLVQSRYYMLSSGNPESSPPTREQWEVHSAVFDQHGEIMVSPDYVVHTIEFDA 567 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 D ++ S + + + L + Sbjct: 568 DGNPVAEPVELAFGDKSVQYNIAGTKDSKSSNFVYR------DSAILGKDQDGRTEGHLR 621 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS-------IGWLEKNRSD 417 + + + + + +A + L + N + S Sbjct: 622 DVRIDKDGIIFLAFDNGAYEPMGRIGIAAFVNDQGLRKVGGNLFEMTEMVVNGNANTISG 681 Query: 418 SHDLHMKSQVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L + + + + + T V++ L+ LI +++ Y+++ + D +++ L Sbjct: 682 RPILGWEGLNLKYGSVLYKHLETSNVDVGNALTELIVMQRGYSMNARAFTTGDDLIKEAL 741 Query: 477 EGVK 480 + Sbjct: 742 NLKR 745 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 60/249 (24%), Gaps = 33/249 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + + + SI NI N + Y N Sbjct: 1 MNGTLVNSYSGIKTHQFGLDSISNNIANVNTIGYRENIPQFETLFANNMDFLNADSPINN 60 Query: 50 --VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHYNNS 99 T+ S + A + + + E S + + Sbjct: 61 DMNYGATKSSNAISTRSGSYKATDGEFNVAYEGKGWFIVGEQKSGSFEIKDDGYEKKQKN 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 E Y N S + + E+ ++ + ++ +A +L Sbjct: 121 YFTRDGSFLRDGEGYIVNTSGYYMYGVDLGKIED----GIYTSNKDEEKDFEALSSGKLT 176 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD------FLDQRDVLLQKISEIIGISTIVRN 213 ++ + L V+ + T + + F D+ + ++ + Sbjct: 177 PMHIPQNLYYRPVLTTKLDVSTNLNKNENAISAVAFFKDKEGEFDVERFMNTDVNAFAAD 236 Query: 214 NNDMVVYTS 222 + + T Sbjct: 237 DMPLNASTY 245 >gi|261253612|ref|ZP_05946185.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] gi|260937003|gb|EEX92992.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ +V ++ + + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399 ++ + ++ + ++ + + Sbjct: 125 EGVIVTSGAGYALEPEIAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQIATVDFVNPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N ++ S + F + +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPIGQNL--YMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I DKM+ Sbjct: 243 MNSKVISAVDKMM 255 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 46/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + ++ + + + + Sbjct: 121 TVNDEGVIVTSGAGYALEPEIAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQIATVDFV 180 Query: 164 RRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTE 229 >gi|268680906|ref|YP_003305337.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] gi|268618937|gb|ACZ13302.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] Length = 567 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/448 (7%), Positives = 102/448 (22%), Gaps = 17/448 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + + I NI N + + + ++ V T S + + Sbjct: 1 MNSSLYNGVSGIKTSQFYIDVIGNNISNVNTNGFKGSTPEVSSLFSSILVGTYNSYSNGV 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-------YNNSPTHYISKLRDSLESYS 115 +++ Q +L++ + ++ + N+ E Sbjct: 61 GMGAQSFNTALDMSQGILENTDNTFDLALGSEGWFGVQGADGNTYYTRAGSFSLDAEGNL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-ELEISNLRRFLSELTVVN 174 + + L T+ +N + +T A+ Q + I+ L Sbjct: 121 VDGDGNYLLATLGNNIATTTLDADTLAKFGQYYNNGTASSVTPYAITELNDVGLGTIGSQ 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-ISTIVRNNNDMVVYTSDGTTLFETVPR 233 + + + + ++ + + + +D T+ T+ Sbjct: 181 GIVNLPKTLYYPPVASSEASYSANLDPTITTDAVTLDLNSADYPSSVLADTTSKTLTLNG 240 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 I + + + + +A ++ + D + Sbjct: 241 TITNTITTQTPQKGDIVDVTLKDASGKTLLLTATLDENLEWSINDYDVSAYDLSSAFTLT 300 Query: 294 ARVL-------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + L I + + + + + + Sbjct: 301 SAKLQTEQEVATQENFSTSIIGPDGDKDILDMTFTKVIPQTSTETTWNAVVNIYSFYETY 360 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + S D N + N TL Sbjct: 361 DTSKTYDTTQYYIDKTANKVYEIVDTQTGALTFNGNGSLASNTIPTINNGGTTLTLNLGT 420 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434 G+ S+++ + + Sbjct: 421 VGGYDGM-VSNANIDKANASSSNGTLEG 447 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 31/364 (8%), Positives = 92/364 (25%), Gaps = 8/364 (2%) Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 L D V+ + + + + + ++ + Sbjct: 210 TTDAVTLDLNSADYPSSVLADTTSKTLTLNGTITNTITTQTPQKGDIVDVTLKDASGKTL 269 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + T ++ D S S ++ ++ + T++ Sbjct: 270 LLTATLDENLEWSINDYDVSAYDLSSAFTLTSAKLQTEQEVATQENFSTSIIGPDGDKDI 329 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 + + + S + VV + K + ++ Sbjct: 330 LDMTFTKVIPQTSTETTWNAVVNIYSFYETYDTSK-------TYDTTQYYIDKTANKVYE 382 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ + + GN L G + + Sbjct: 383 IVDTQTGALTFNGNGSLASNTIPTINNGGTTLTLNLGTVGGYDGMVSNANIDKANASSSN 442 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + + ++ ++I + + + + V + L+ + N + Sbjct: 443 GTLEGFLTGYDVDTNGNVIASFSNGKSSSVAKIAVYHFQNDQGLMAESSNLFSESSNSGK 502 Query: 417 DSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + V+L L+ LI V+++++ S K I +D++L+ Sbjct: 503 AFFYADESGESFLGSKVYSHKLEGSNVSLATALTELIIVQKAFDASAKSITTSDELLKNA 562 Query: 476 LEGV 479 + Sbjct: 563 INMK 566 >gi|221640825|ref|YP_002527087.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332559802|ref|ZP_08414124.1| FlgG2 [Rhodobacter sphaeroides WS8N] gi|221161606|gb|ACM02586.1| Flagellar basal-body rod protein FlgG precursor [Rhodobacter sphaeroides KD131] gi|332277514|gb|EGJ22829.1| FlgG2 [Rhodobacter sphaeroides WS8N] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + G L N +LE S + + F + + Y Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIAGVAGEDGFGTLRQGYLEESS 223 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ +E++ LIK ++ Y ++ K+I D+ML Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L + + + + S Sbjct: 63 PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ S E + + + + + + + ++ +IS Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174 >gi|170725957|ref|YP_001759983.1| flagellar basal body rod protein FlgG [Shewanella woodyi ATCC 51908] gi|169811304|gb|ACA85888.1| flagellar basal-body rod protein FlgG [Shewanella woodyi ATCC 51908] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ +V + + F + Sbjct: 48 TVNQAGGVSASNTKLPNGLNVGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382 D + T+ Q ++ S +++ ++ ++ + + Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTSGSGYVVQPAITIPENATGITVSAEGEVSVKTAGTAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ ++ L +N S + S + + T V Sbjct: 168 SQVVGQLTMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAVRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 33/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53 + ++ + + I N+ NA Y + + V+ Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 54 ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + + + + L + + Sbjct: 61 KLPNGLNVGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I E ++ EV Sbjct: 121 TLDDTGQIVTSGSGYVVQPAITIPENATGITVSAEGEVS 159 >gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein FlgG [Herbaspirillum seropedicae SmR1] gi|300074139|gb|ADJ63538.1| flagellar basal-body rod FlgG protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R+ + + F + D + + Q ++ + Sbjct: 76 ATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAFQTDSQGQLVTSSGYT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + I + VA L N ++ Sbjct: 136 LQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFINPAGLESRGENL--YM 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + Y T VN+ EEL +I+ +++Y I++K I +D+M Sbjct: 194 ETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQM 253 Query: 472 LQTL 475 L L Sbjct: 254 LAKL 257 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 15/245 (6%), Positives = 47/245 (19%), Gaps = 35/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V ++ ++ F + Sbjct: 61 QLPSGLQIGTGVRPVATERI---FTQGNVNQTNNDKDLAIQGNGFFQIL------LPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE--VVQNFNTSAREVQKIRADADKEI 156 + + + S L + + + +Q + Sbjct: 112 TAYTRDGAFQTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 ++++ + + AS + + + V Sbjct: 172 TIQVATFINPAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELV 231 Query: 217 MVVYT 221 ++ T Sbjct: 232 NMIQT 236 >gi|292487941|ref|YP_003530816.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292899160|ref|YP_003538529.1| flagellar basal-body rod protein FlgG [Erwinia amylovora ATCC 49946] gi|291199008|emb|CBJ46119.1| flagellar basal-body rod protein FlgG (distal rod protein) [Erwinia amylovora ATCC 49946] gi|291553363|emb|CBA20408.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312172062|emb|CBX80319.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + + D + S N Q +N F V ++ Sbjct: 94 DVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQLVTNAGFPVQPAIVIPANSLSMTVSR 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + ++ + L N + E S + Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSSMGENL--YQETQASGVPNESNPGNNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EEL +I+ +++Y I++K I +D+ML L + Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 21/170 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R+ + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S + Sbjct: 61 TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + ++ A + + + A+ Sbjct: 118 GSFQTDQNGQLVTNAGFPVQPAIVIPANSLSMTVSRDGVVSVTQQGQANP 167 >gi|322421726|ref|YP_004200949.1| flagellar hook-basal body protein [Geobacter sp. M18] gi|320128113|gb|ADW15673.1| flagellar hook-basal body protein [Geobacter sp. M18] Length = 294 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 60/221 (27%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 S+ V I+ + + L + + + N G + Sbjct: 74 STQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVDNTLTLVNPDGYQV 133 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 D + L G + T + S L + Sbjct: 134 LDTQGNPIKFLNSGAAPTTDFGKIISVDNSGLITYLATDGITQNYYNTSGAVGVAATVAN 193 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + + L + + + K V I + Sbjct: 194 SATVQRLAVVTASDPTALTKLGGSLYQATTAAGVSGAAFSLAANKPNGVSEKILSNTLEQ 253 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E +I +++Y+ ++K I TD+M Q +L+ ++ Sbjct: 254 SNVDMASEFVKMIVTQRAYSANSKTITTTDQMTQEVLQLIR 294 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/214 (9%), Positives = 48/214 (22%), Gaps = 10/214 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52 MS+ + + I NI N + + T+ + Sbjct: 1 MSVTSALFTGVTGLLQNGEAMNVIGNNISNVNTIGFKGARTLFSDMLSQNVGNDSQIGKG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110 V + + + +F AL S N++ + Sbjct: 61 VQMQVVQNVFSQGSTQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 N + T + + + + + I D I ++ Sbjct: 121 NTLTLVNPDGYQVLDTQGNPIKFLNSGAAPTTDFGKIISVDNSGLITYLATDGITQNYYN 180 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 T + A+ ++++ Sbjct: 181 TSGAVGVAATVANSATVQRLAVVTASDPTALTKL 214 >gi|163794152|ref|ZP_02188125.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] gi|159180766|gb|EDP65285.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 16/166 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50 N A I NI N + Y R+ + + V Sbjct: 3 SLNIASTGMAAQQFNVEVISNNIANMNTTGYKRQRAEFQDLLYQDLRRVGTNSSDAGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q A+ L + + + + Sbjct: 63 PSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGETAYTRAGSFQT 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + ++ + N S + +I ++ Sbjct: 123 NQDGTLVTPDGYTVQPGITIPSDTLSVTINESGQVFAQIDGQVQEQ 168 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 8/210 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + Q+ + + ++N L I Sbjct: 52 GTNSSDAGTIVPSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGE 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF------NKNFI 387 + T + Q + + + G + + + + + +N Sbjct: 112 TAYTRAGSFQTNQDGTLVTPDGYTVQPGITIPSDTLSVTINESGQVFAQIDGQVQEQNVG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A + L +N + LE + S + + F + + + V+ E Sbjct: 172 QLQLAIFQNDAGLENIGQNLL--LETSASGAATTGVPGATGFGKLQQGFVEASNVDPVHE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ LI +++Y +++K+I +D+M+ T+ Sbjct: 230 ITNLITAQRAYELNSKIIETSDQMMSTVNN 259 >gi|312884832|ref|ZP_07744524.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309367484|gb|EFP95044.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNTQNTNQDLDLAVMGKGFFQIENSDGQIMYTRNGQFQVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ D + +A L N + + Sbjct: 137 EPQIQIPDDALSISVGVDGTVTTTSAIDPTPQQVGQITLARFINPAGLEAVGGNL--FRQ 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + S+ I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGLAEELIASEDGVGSIKQRALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 63.1 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 34/153 (22%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYTIQRQPGAQVDEVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + + F ++ Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTNQDLDLAVMGKGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + E N L + + + Sbjct: 115 TRNGQFQVNSEGLMVNSQGLPLEPQIQIPDDAL 147 >gi|283953936|ref|ZP_06371465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] gi|283794541|gb|EFC33281.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 90 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGAIAI 149 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 150 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 207 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 208 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 40/205 (19%), Gaps = 31/205 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 + A Q NI N + + + SP Sbjct: 3 SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62 Query: 48 ENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + V K + L + S+ + F ++ Sbjct: 63 SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIGYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEI 160 + E N L + + T + + + + + Sbjct: 117 NGQFTKDNEGNIVNSDGYRLLPEMTIPEGAIAINVATDGTVSVMLPGEQQETQIGQVELV 176 Query: 161 SNLRRFLSELTVVNDAIKFKTASKH 185 + N ++ + Sbjct: 177 QFINPAGLHSMGDNLYLETGASGAP 201 >gi|288574696|ref|ZP_06393053.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570437|gb|EFC91994.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 8/201 (3%) Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 R + + + + D + Q S Sbjct: 64 WPWRSHPIGNASMNQVLSETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQ-DGEGNQFYS 122 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + V +V A + + + G Sbjct: 123 RSGHFLVNEGGQLVNPDGYLLVGDGGPIDVGEAAAVSFTDDGQVIADGIAVAQIDIVGFE 182 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 + L + +N + E S + QV VN+ EE+ LI+ + Sbjct: 183 SPTALRQMGKNLLA--ETEDSGAPAPVEVPQVAVG-----VLERSNVNVVEEMVRLIEAQ 235 Query: 456 QSYNISNKLIMFTDKMLQTLL 476 ++Y ++K I +D M L+ Sbjct: 236 RAYEAASKGIQTSDDMTGQLI 256 Score = 36.9 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 11/164 (6%), Positives = 27/164 (16%), Gaps = 22/164 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN- 49 + + N+ N D + R + + Sbjct: 1 MHKGIYAGVSAMMVQQGVTDCAANNLANVDTAGFRARKPIAKSFPEVLMERVDPAKGQGE 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSP 100 + S N+ + + + + E D N Sbjct: 61 IPPWPWRSHPIGNASMNQVLSETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQDGEGNQF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + N +L + + Sbjct: 121 YSRSGHFLVNEGGQLVNPDGYLLVGDGGPIDVGEAAAVSFTDDG 164 >gi|226950050|ref|YP_002805141.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226841546|gb|ACO84212.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 263 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/196 (8%), Positives = 39/196 (19%), Gaps = 24/196 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V L + Q F + + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVI------MADGDYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + + N A+ + L Sbjct: 115 GNFLIDRNGMLVDENGNALDIQLQQPEGVQILNRIGGFDANNINIAEDGSISVRDTDGLN 174 Query: 165 RFLSELTVVNDAIKFK 180 + + ++ + N Sbjct: 175 KVVGKINIYNAVGADA 190 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + L RN +L ++ + Sbjct: 150 GGFDANNINIAEDGSISVRDTDGLNKVVGKINIYNAVGADAFLSIGRNL--YLPRDGVNV 207 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 208 FVNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|82544456|ref|YP_408403.1| flagellar basal body rod protein FlgG [Shigella boydii Sb227] gi|81245867|gb|ABB66575.1| cell-distal portion of basal-body rod [Shigella boydii Sb227] gi|320186975|gb|EFW61688.1| Flagellar basal-body rod protein FlgG [Shigella flexneri CDC 796-83] gi|332094081|gb|EGI99133.1| flagellar basal-body rod protein FlgG [Shigella boydii 3594-74] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y T VN+ EEL +I+V+++Y I++K + TD+M Q L + Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|114777905|ref|ZP_01452819.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans PV-1] gi|114551692|gb|EAU54244.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans PV-1] Length = 251 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ +A + ++ +A L + N + N Sbjct: 129 GITIPADAQSIQIAQDGTVSVTQANATQTVLGQIQIADFLNPAGLAKLGGNL--FQPSNA 186 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + ++ +++ V++ EE+ LI +++Y +++K I +D+MLQT Sbjct: 187 SGTAVIGNPTENGLGSMTQGTLEMSNVSMVEEMVNLIAGQRAYEMNSKAIQASDEMLQTA 246 Query: 476 LEGVK 480 + Sbjct: 247 NNVKR 251 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 14/196 (7%), Positives = 36/196 (18%), Gaps = 28/196 (14%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVT 54 S I NI N + + R P + V Sbjct: 1 MAAQSLNVDVISNNIANVNTNGFKRGRANFQDLMYQQIKAPGAEASAAGTQLPTGIQVGL 60 Query: 55 QRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + ++ + + F ++ + Sbjct: 61 GVRTASVDSIFSEGSFQQTNNPLDLTIQGRGFFQVQ------LANGETAYTRAGSFSLDA 114 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + D+L + A+ + + L Sbjct: 115 TGQIVTQNGDVLQPGITIPADAQSIQIAQDGTVSVTQANATQTVLGQIQIADFLNPAGLA 174 Query: 172 VVNDAIKFKTASKHDA 187 + + + + A Sbjct: 175 KLGGNLFQPSNASGTA 190 >gi|258621051|ref|ZP_05716085.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|258625279|ref|ZP_05720187.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|262166280|ref|ZP_06034017.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] gi|262170827|ref|ZP_06038505.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|258582452|gb|EEW07293.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|258586439|gb|EEW11154.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|261891903|gb|EEY37889.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|262025996|gb|EEY44664.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 3/189 (1%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ +V ++ + + F + D + + T+ Sbjct: 69 GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403 ++ S R + + ++ + L Sbjct: 129 VTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N +L S + + +S T VN+ EEL +I+ ++ Y +++K Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246 Query: 464 LIMFTDKML 472 +I DKM+ Sbjct: 247 VISAVDKMM 255 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/226 (7%), Positives = 45/226 (19%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57 ++ + A+I N+ NA + + + Sbjct: 4 ALWVSKTGLDAQQTNIATISNNLANASTVGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63 Query: 58 ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 + + + + + Sbjct: 64 SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I E+ + N + V+ + + + + Sbjct: 124 DEGAIVTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229 >gi|157961173|ref|YP_001501207.1| flagellar basal body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157846173|gb|ABV86672.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 G + ++ + + ++ + + + F + D Sbjct: 50 NQAGGISASNTKLPNGLSIGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384 + ++ Q + S +++ ++ ++ ++ N+ Sbjct: 110 GTAAYTRNGQFSLDDTGQIVTPGSGYVVQPAITIPEDATSITVSAEGEVSVKTPGNAENQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +N ++E S + S I + T VN+ Sbjct: 170 VVGQLAISDFINPSGLDPMGQNL--YMETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 10/165 (6%), Positives = 38/165 (23%), Gaps = 27/165 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + + I N+ NA + + + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGISASNT 60 Query: 46 -SPENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P +++ + + + + +++ F ++ + Sbjct: 61 KLPNGLSIGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQ------LPDGTAAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + I E+ ++ EV Sbjct: 115 TRNGQFSLDDTGQIVTPGSGYVVQPAITIPEDATSITVSAEGEVS 159 >gi|83646788|ref|YP_435223.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396] gi|83634831|gb|ABC30798.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 254 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A + L + ++ + + + I + + + V+L Sbjct: 161 EVGEIQLAKFVNDQALESAGQGL--YIPADDAGAPLYSQAGVNGLGMIQQGFLESSNVDL 218 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +EL L+ ++ Y ++ +I D+++Q Sbjct: 219 VKELVELVTAQRGYQANSHVIRAADEIMQ 247 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 29/141 (20%), Gaps = 21/141 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------P 47 ++ A+ +Q +I N+ N + Y + Sbjct: 1 MIDALYVAETGLQAGQKQIETISNNMANLNTVAYKKSRVAFGDLVSRQPAASAAEGKGIG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + L A + + F + L Sbjct: 61 SVGMGTKVAEVSMQFDSGDLKATENQLDLAIRGDGFFEVL------LENGEYGYTRNGAL 114 Query: 108 RDSLESYSKNLSEDILGKTVI 128 + + Y L+ L + Sbjct: 115 KIDEDGYLSTLTGLRLSDQIQ 135 >gi|113969608|ref|YP_733401.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-4] gi|113884292|gb|ABI38344.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-4] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVSVKTPGTAE 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ ++ L +N S + S I + T V Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + + N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I ++ ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVS 159 >gi|256014942|ref|YP_003104951.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] gi|255997602|gb|ACU49289.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALMIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + + + + ++ + Sbjct: 63 PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + + + K++ ++ ++ Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173 Query: 161 SNLRRF 166 + Sbjct: 174 TLANFT 179 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 65 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 185 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 243 NSKVIQAADEM 253 >gi|153952075|ref|YP_001398357.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] gi|152939521|gb|ABS44262.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] Length = 263 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 91 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 40/208 (19%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQMQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K L + S+ + F ++ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTKGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157 + E N L + T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|332088746|gb|EGI93858.1| flagellar basal-body rod protein FlgG [Shigella boydii 5216-82] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + Y +T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 200 APNESTPGLNGAGLLYQGYVDTSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVRS---VATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|120613061|ref|YP_972739.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|326319099|ref|YP_004236771.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591525|gb|ABM34965.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|323375935|gb|ADX48204.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 4/198 (2%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L R + S + S N + I T + Q Sbjct: 63 PTGLHLGLGVRTVATSRNFTQGSLAQSNNNLDVAINGNGFFQVTMPDGTTGYTRDGSFQL 122 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S + G + N G + + G + + A Sbjct: 123 DSQGRLVTSSGLPVANGITVPANATGISISTDGIVSATVPGTTAPQQIGTLGMASFINSA 182 Query: 405 R----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + E S I + + T VN+ EEL +I+ +++Y + Sbjct: 183 GLEPIGQNLFKESAASGQPQQGTPGTNGLGIIRQGFLETSNVNVVEELVSMIQTQRAYEM 242 Query: 461 SNKLIMFTDKMLQTLLEG 478 ++K I +D+ML L + Sbjct: 243 NSKAIQTSDQMLAKLAQL 260 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 27/159 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44 ++ A+ + Q I N+ N Y R + T Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGAQTTEQN 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + ++N L ++ + F + + Sbjct: 61 QLPTGLHLGLGVRTVATSRNFTQGSLAQSNNNLDVAINGNGFFQV------TMPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 + + S + + A + +T Sbjct: 115 TRDGSFQLDSQGRLVTSSGLPVANGITVPANATGISIST 153 >gi|148380595|ref|YP_001255136.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153933262|ref|YP_001384882.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153935902|ref|YP_001388351.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|168180938|ref|ZP_02615602.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|148290079|emb|CAL84198.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152929306|gb|ABS34806.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152931816|gb|ABS37315.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|182668229|gb|EDT80208.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 263 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/196 (8%), Positives = 39/196 (19%), Gaps = 24/196 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V L + Q F + + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVI------MADGDYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + + N A+ + L Sbjct: 115 GNFLIDRNGMLVDENGNALDIQLQQPEGMQILNRIGGFDANNINIAEDGSISVRDTDGLN 174 Query: 165 RFLSELTVVNDAIKFK 180 + + ++ + N Sbjct: 175 KVVGKINIYNAVGADA 190 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + L RN +L ++ + Sbjct: 150 GGFDANNINIAEDGSISVRDTDGLNKVVGKINIYNAVGADAFLSIGRNL--YLPRDGVNV 207 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 208 FVNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|190574261|ref|YP_001972106.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia K279a] gi|194365678|ref|YP_002028288.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia R551-3] gi|190012183|emb|CAQ45806.1| putative flagellar basal-body rod protein [Stenotrophomonas maltophilia K279a] gi|194348482|gb|ACF51605.1| flagellar basal-body rod protein FlgG [Stenotrophomonas maltophilia R551-3] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 2/211 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G A Q+ + ++ A+ ++ A + F + D Sbjct: 51 QPGGSSSAQTQLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + S I + + +N + G + +V + + + Sbjct: 111 SSAYTRDGSFKINQDSELVTNSGYPVQPGIQIPEGAQSVTIGTDGTISVKMADGAASVEV 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N +LE S + + VN+ E Sbjct: 171 GALTLTDFVNPAGLQARGENL--FLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EL +I+ +++Y ++ K I TD ML L Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDSMLGYLNN 259 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 38/137 (27%), Gaps = 15/137 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 + A+ + + + + N+ N + + + + + T Sbjct: 1 MNQALWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQT 60 Query: 55 QRSENKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADD---HYNNSPTHYISKL 107 Q + V ++ GQQ+ ++ + + + +S Sbjct: 61 QLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILG 124 + + +S S + Sbjct: 121 KINQDSELVTNSGYPVQ 137 >gi|315928464|gb|EFV07776.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 437 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/435 (6%), Positives = 84/435 (19%), Gaps = 41/435 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + NI N + + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + + F + + D Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + N + ++ I+ + + + T E Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++ + +N + D+ +++ + ++ + N + V Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 V F + E I++ + + Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGQGAQVNQGNNGVFD 282 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + N + Sbjct: 283 PNQKVNQNTVIFWGHEQKPTTLDITLNGVHIQNNSIKSLDEAIAYINTFTAPNDTRDGTG 342 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 V +++ S + + N+KN+ + N + N +P N+ Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPNNSAGELINIRVAGNPADFAWNNIQ 402 Query: 400 LLEYARNSIGWLEKN 414 L + Sbjct: 403 LRPAGNPIVNGAGSA 417 >gi|227820858|ref|YP_002824828.1| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234] gi|227339857|gb|ACP24075.1| flagellar basal-body rod protein FlgG [Sinorhizobium fredii NGR234] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 14/184 (7%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 + A N I NI N + Y R + Sbjct: 3 ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L S+ + + + + ++ + Sbjct: 63 PEGAIVGLGVQTAAVR---NLHVQGSLVNTSNDLDLALVGRGWFQVE------TPNGETV 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + + + S + + +I + + ++ Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGITVPQDATEITVSASGQVLVRIGDATETQEIGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TIAN 177 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + + + V + + + + + Sbjct: 65 GAIVGLGVQTAAVRNLHVQGSLVNTSNDLDLALVGRGWFQVETPNGETVYTRSGAFNTNA 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Q + + G + + A L+ + + +A L Sbjct: 125 TGQLVTIDGYTVVPGITVPQDATEITVSASGQVLVRIGDATETQEIGQLTIANFVNEAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + + S + + F I + Y + V+ +E++ LI +++Y + Sbjct: 185 EPQGENL--FKQTAASGEPIVGTPADPGFAQIKQGYLESSNVDPVKEITDLISAQRAYEM 242 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 243 NSKVIQAADEM 253 >gi|149927800|ref|ZP_01916051.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] gi|149823422|gb|EDM82653.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] Length = 260 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R ++ + F + D + S I N ++ + Sbjct: 76 STVRNFAQGNLQQTGNTLDVAINGQGFFQVQMPDGTTSYTRDGSIQIDANGTLVTSNGYP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + + + + +A L +N Sbjct: 136 VLGPVTIPQGVQEISISQDGVVSAVVQGQVQPQELGQIQLASFVNPAGLFSMGQNLYS-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + +S+ + T VN+ EEL LI+ +++Y I++K I +D+M Sbjct: 194 ETAASGAPTQAVAGTNGVGFVSQGFVETSNVNVVEELVGLIQAQRAYEINSKAISTSDQM 253 Query: 472 LQTL 475 LQ L Sbjct: 254 LQRL 257 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 29/149 (19%), Gaps = 33/149 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A+ + Q I N+ N + R + Sbjct: 1 MMRSLWIAKTGLDAQQTQLDVISNNLANTATNGFKRSRAVFEDLLYQTLRQPGAQTTEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V+ L + + Q F ++ Sbjct: 61 QVPSGLQIGTGVKPVSTVRN---FAQGNLQQTGNTLDVAINGQGFFQVQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTV 127 + ++ + + V Sbjct: 112 TSYTRDGSIQIDANGTLVTSNGYPVLGPV 140 >gi|260779345|ref|ZP_05888237.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260605509|gb|EEX31804.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNTQNTSQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + +V + + +A L N + E Sbjct: 137 EPQIQIPENALSVSVGVDGTVSATTADSTAPQELGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGQADELIAGEDGVGSIKQGSLEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 32/153 (20%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGALVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + S + + Q F ++ Sbjct: 61 ELPAGVQLGSGVRVVGTQKVFTQGNTQNTSQELDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + E N L + + Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPENAL 147 >gi|77464904|ref|YP_354408.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides 2.4.1] gi|77389322|gb|ABA80507.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + G L N +LE S + + F + + Y Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIAGVAGEDGFGTLRQGYLEESS 223 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ +E++ LIK ++ Y ++ K+I D+ML Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQAVRPGTVSAEDGRML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L + + + + S Sbjct: 63 PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ S E + + + + + + + ++ +IS Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174 >gi|20806699|ref|NP_621870.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515153|gb|AAM23474.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + P + N ++ + Sbjct: 106 PDDKVYYTRDGSFKLSPDGNTFMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVK 165 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 D + + LL N + S + + + + Sbjct: 166 NPDGTTQEVATLGIYNFTNPQGLLSVGNNL--YEATEASGQPGTRDDFEGRMGKVMQGFL 223 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V + +E+ +I +++Y I++K I D+ML + Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 50/236 (21%), Gaps = 6/236 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A I N+ N + + R NV R Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + V + + L ++ + S+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + D + + N + +++ N E+ + Sbjct: 121 SPDGNTFMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIY 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + L + + + + TS+ + E V Sbjct: 181 NFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVD 236 >gi|86151551|ref|ZP_01069765.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] gi|85841180|gb|EAQ58428.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] Length = 263 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 48/179 (26%), Gaps = 2/179 (1%) Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + F + D + T ++ + + Sbjct: 87 KSTNTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEG 146 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 + + + + L N +LE S + Sbjct: 147 ATAINVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVA 204 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 205 GIAGQDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + L + ++ + F ++ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTNTDGLDMAIAGNGFFQIQ------LPDGTIG 114 Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + E N L V T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|261211320|ref|ZP_05925608.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] gi|260839275|gb|EEX65901.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] Length = 262 Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 3/189 (1%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 +++ +V ++ + + F + D + + T+ Sbjct: 69 GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403 ++ S R + + ++ + L Sbjct: 129 VTSGSGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 +N +L S + + +S T VN+ EEL +I+ ++ Y +++K Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246 Query: 464 LIMFTDKML 472 +I DKM+ Sbjct: 247 VISAVDKMM 255 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 15/226 (6%), Positives = 44/226 (19%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57 ++ + +I N+ NA + + + Sbjct: 4 ALWVSKTGLDAQQTNITTISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63 Query: 58 ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 + + + + + Sbjct: 64 SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I E+ + N + V+ + + + + Sbjct: 124 DEGAIVTSGSGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229 >gi|28897555|ref|NP_797160.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91225875|ref|ZP_01260844.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|153839683|ref|ZP_01992350.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|254230138|ref|ZP_04923533.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|260364613|ref|ZP_05777215.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260878282|ref|ZP_05890637.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260898112|ref|ZP_05906608.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260901956|ref|ZP_05910351.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|262394937|ref|YP_003286791.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269965422|ref|ZP_06179541.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|5361010|gb|AAD42917.1|U12817_11 polar flagellar FlgG homolog [Vibrio parahaemolyticus] gi|28805767|dbj|BAC59044.1| polar flagellar FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91189525|gb|EAS75801.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|149746793|gb|EDM57781.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|151937331|gb|EDN56194.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262338531|gb|ACY52326.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269829901|gb|EEZ84131.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|308086113|gb|EFO35808.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308090170|gb|EFO39865.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308106768|gb|EFO44308.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115105|gb|EFO52645.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328473451|gb|EGF44299.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 262 Score = 68.5 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ ++ S + + ++ + Sbjct: 110 GNIGYTRNGQFTLNGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRVRGQQDNQ 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + I +S VN+ Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + A+I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + E + I E+ + + EV Sbjct: 121 TLNGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVS 159 >gi|260222470|emb|CBA32066.1| Flagellar basal-body rod protein flgG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 68.5 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + F + D + + I + ++ Sbjct: 76 ATSRSFSQGNLQQSSNNLDVAIQGNGFFQVTMPDGTTGYTRDGAFQIDNAGRLVTSNGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G +V + + +A L +N Sbjct: 136 ILNGINIPANATSVAIAQDGAVTAMVPGNVAPQPIGTITLASFINPAGLEPKGQNIYA-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + +++ + T VN+ +EL +I+ +++Y +++K I +D+M Sbjct: 194 ESTASGQPNAGTAGANGLGTLAQGFVETSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTL 475 LQ L Sbjct: 254 LQKL 257 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 11/222 (4%), Positives = 44/222 (19%), Gaps = 27/222 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ Q I N+ N + + + + Sbjct: 1 MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKKSHAVFEDLMYQNLRQVGSNTSEQS 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + +++ L S+ + F + + Sbjct: 61 TLPTGLQLGLGVRTVATSRSFSQGNLQQSSNNLDVAIQGNGFFQV------TMPDGTTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + A + + + I+ Sbjct: 115 TRDGAFQIDNAGRLVTSNGLPILNGINIPANATSVAIAQDGAVTAMVPGNVAPQPIGTIT 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 + ++ + L +++ Sbjct: 175 LASFINPAGLEPKGQNIYAESTASGQPNAGTAGANGLGTLAQ 216 >gi|323498418|ref|ZP_08103414.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] gi|323316491|gb|EGA69506.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 8/199 (4%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L+ S V Q + + + + G Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + Y P + ++S + + N+ F Sbjct: 125 EGAIVTSGAGYGLEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQITTVDFI---- 180 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L +N +L S + F I +S T VN+ EEL +I+ Sbjct: 181 --NPGGLEPIGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIE 236 Query: 454 VEQSYNISNKLIMFTDKML 472 ++ Y +++K+I DKM+ Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPTGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + ++ + + + + Sbjct: 121 TVNDEGAIVTSGAGYGLEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQITTVDFI 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229 >gi|126463746|ref|YP_001044860.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|126105410|gb|ABN78088.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + G L N +LE S + + F + + Y Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIGGVAGEDGFGTLRQGYLEESS 223 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ +E++ LIK ++ Y ++ K+I D+ML Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L + + + + S Sbjct: 63 PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ S E + + + + + + + ++ +IS Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174 >gi|262276415|ref|ZP_06054224.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262220223|gb|EEY71539.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 71/253 (28%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ RV + A + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQRVHTNGNVQTTNNALDLMIEGDGFFQILLPDGNIGYQRNGQFTLND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVT 399 ++ + + + ++ Sbjct: 125 EGVIVTSGAGYPLEPEIVVPPDAIQVTVGTDGEVSARLRGQQENAILGQITTVDFINPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N +L S + + +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I D+ML Sbjct: 243 MNSKVISSVDQML 255 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 19/238 (7%), Positives = 55/238 (23%), Gaps = 38/238 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + ++I N+ NA + + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 VV + + + + ++A+ F + N Sbjct: 61 ELPSGLMLGAGSKVVATQRVH---TNGNVQTTNNALDLMIEGDGFFQIL------LPDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK----TVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + E + D + V + ++ + +A Sbjct: 112 IGYQRNGQFTLNDEGVIVTSGAGYPLEPEIVVPPDAIQVTVGTDGEVSARLRGQQENAIL 171 Query: 155 EIELEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + E N + + + LD + Q + E ++ Sbjct: 172 GQITTVDFINPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTE 229 >gi|254478074|ref|ZP_05091457.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035936|gb|EEB76627.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 266 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + P + N ++ + Sbjct: 106 PDDKVYYTRDGSFKLSPDGNTLMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVK 165 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 D + + LL N + S + + + + Sbjct: 166 NPDGTTQEVATLGIYNFTNPQGLLSVGNNL--YEATEASGQPGTRDDFEGRMGKVMQGFL 223 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V + +E+ +I +++Y I++K I D+ML + Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 53.9 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 51/236 (21%), Gaps = 6/236 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A I N+ N + + R NV R Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + V + + L ++ + S+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + L D + + N + +++ N E+ + Sbjct: 121 SPDGNTLMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIY 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + L + + + + TS+ + E V Sbjct: 181 NFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVD 236 >gi|149189838|ref|ZP_01868118.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148836324|gb|EDL53281.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 4/193 (2%) Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + + + + + + I++ D ++ + VN Sbjct: 64 TGVQLGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHVN 123 Query: 342 PQY-RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVT 399 + N L + ++ + D ++ +A Sbjct: 124 SEGLMVNSQGLPLEPQIQIPDNALTLSVGVDGTVTATTADGPAPQDLGQITLAKFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L N + E S + + + I + V + EE+ +I +++Y Sbjct: 184 LEAIGGNL--FKETEASGQAEELIAGEEGAGSIKQGALEGSNVQVVEEMVDMITTQRAYE 241 Query: 460 ISNKLIMFTDKML 472 ++ K++ D ML Sbjct: 242 MNAKVVSAADDML 254 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 31/154 (20%), Gaps = 27/154 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + Q F ++ Sbjct: 61 QLPTGVQLGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + E N L + + Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNALT 148 >gi|157373205|ref|YP_001471805.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157315579|gb|ABV34677.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 2/252 (0%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + N V + Q P G++ L ++ Sbjct: 5 LWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELNELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ ++ + F + D + Sbjct: 65 GLQLGTGTRVVGTQKIFTSGDMLTTNQQLDLAIEGQGFFQIEEANGDLAYSRDGQFYRNS 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + ++ + + + + + L Sbjct: 125 DGLMVTSQGLPLVPNIEIPEDALTITIATDGIVTAQISGQAEAQELGQITLVNFTNPTGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + + VN+ EE+ +I +++Y + Sbjct: 185 EARGDNL--YRETGASGAAIEGVAGDQAIGQLRQGALEGANVNVVEEMVEMISTQRAYEM 242 Query: 461 SNKLIMFTDKML 472 + K++ +D ML Sbjct: 243 NAKVVSASDDML 254 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/220 (7%), Positives = 50/220 (22%), Gaps = 27/220 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R Sbjct: 1 MQSALWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T + + + Q F ++E + Sbjct: 61 ELPSGLQLGTGTRVVGTQKIFTSGDMLTTNQQLDLAIEGQGFFQIEEA------NGDLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + L + + + T +I A+ + +I+ Sbjct: 115 SRDGQFYRNSDGLMVTSQGLPLVPNIEIPEDALTITIATDGIVTAQISGQAEAQELGQIT 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + ++ A D + ++ Sbjct: 175 LVNFTNPTGLEARGDNLYRETGASGAAIEGVAGDQAIGQL 214 >gi|317047693|ref|YP_004115341.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] gi|316949310|gb|ADU68785.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] Length = 260 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + D + + S + N Q +N + G Sbjct: 82 TQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRDGSFQVDQNGQLVTNSGYTVQPGIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + ++ + L N + E S Sbjct: 142 IPANATSITVSRDGIVSVTQQGQTNPTQVGQLTLSTFMNDAGLDSLGENL--YQETQASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q + + Y T VN+ EEL +I+ +++Y I++K + +D+ML L + Sbjct: 200 AATQSTPGQNGAGLLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAVSTSDQMLAKLTQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 13/170 (7%), Positives = 32/170 (18%), Gaps = 21/170 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A+ + I N+ N + R + T Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTVRQPGTQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH + + S Sbjct: 61 TLPSGMQIGTGVR---PVTTERLHTQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + S + + A + + + Sbjct: 118 GSFQVDQNGQLVTNSGYTVQPGITIPANATSITVSRDGIVSVTQQGQTNP 167 >gi|239817163|ref|YP_002946073.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239803740|gb|ACS20807.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 260 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 2/170 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + G F + D + S + Q + F ++ Sbjct: 93 TDVAINGGGFFQVLMPDGTTAYTRDGSFQTDRDGQLVTASGFPVQPAITLPANATSLTIG 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 I + +A L N E + S + + Sbjct: 153 RDGIVSITQAGQTNTVQVGQLQLATFLNPAGLQSKGENLYA--ETDASGAPNQVNPGIDG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S+ Y VN+ EEL +I +++Y I++K + +D+MLQ L + Sbjct: 211 AGILSQGYVEASNVNVVEELVNMIATQRAYEINSKAVQTSDQMLQRLAQL 260 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 12/176 (6%), Positives = 28/176 (15%), Gaps = 33/176 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + Q + N+ N + R + Sbjct: 1 MMRSLYIAKTGLDAQQTQLDVVSNNLANVGTTGFKRSRAVFEDLMYQNLRQVGGQTSDQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + L F + Sbjct: 61 RLPSGLQVGTGVHVVATERIHSQ---GNLTKTDKPTDVAINGGGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + S + + A + Sbjct: 112 TAYTRDGSFQTDRDGQLVTASGFPVQPAITLPANATSLTIGRDGIVSITQAGQTNT 167 >gi|170758330|ref|YP_001787958.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405319|gb|ACA53730.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 263 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 18/191 (9%), Positives = 40/191 (20%), Gaps = 24/191 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L +++ + SI N+ N + Y R D Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRQ 60 Query: 48 ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V +L + Q F + N Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MSDGNYAYERS 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + L + N A+ +I + Sbjct: 115 GNFVIDRNGMLVDENGNRLEIQFQGTEGMQILNRIGGFSRNNINIAEDGSISVKDIDGIN 174 Query: 165 RFLSELTVVND 175 + + ++ + N Sbjct: 175 KMVGKINIYNA 185 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 F N N+A + D NK + + + RN E + Sbjct: 150 GGFSRNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFA 209 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ I + + V+ +E++ +I ++++ +S++ I D+M ++ Sbjct: 210 NNDV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260 Query: 479 VK 480 ++ Sbjct: 261 MR 262 >gi|83858806|ref|ZP_00952328.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii HTCC2633] gi|83853629|gb|EAP91481.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii HTCC2633] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 66/213 (30%), Gaps = 2/213 (0%) Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 S A + V + R+ + + + Sbjct: 46 QTISQPGANSSNAGTIVPTGVQVGLGVNAGSVYRITEQGGMSETNNPYDVAISGQGYFRV 105 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + D ++ + + ++ N + + + G V V + Sbjct: 106 QLPDGNDAYTRAGNFSLSPNGEIVTADGYAVMPGIVIPAEARQVVINNQGQVQVLLDGQP 165 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + +A L + N + LE S + +L + F + + + Sbjct: 166 QPQVVGQFELATFPNEAGLEQIGDNLL--LESAASGAPNLGAPTDPGFGSLRQRFVEVSN 223 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 V+ E++ LI+ +++Y ++ ++I D+ML T Sbjct: 224 VDAVTEITSLIQAQRAYEMNARVITAADEMLAT 256 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 13/163 (7%), Positives = 30/163 (18%), Gaps = 34/163 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 + A S I N+ N + + R+ Sbjct: 3 ALSTAATGMEAQSLAVEVISHNLANMNTIAFKRQRAEFEDLLYQTISQPGANSSNAGTIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + ++ Q + ++ N Sbjct: 63 PTGVQVGLGVNAGSVYRITEQ---GGMSETNNPYDVAISGQGYFRVQ------LPDGNDA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 S + ++ AE N + Sbjct: 114 YTRAGNFSLSPNGEIVTADGYAVMPGIVIPAEARQVVINNQGQ 156 >gi|103488387|ref|YP_617948.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] gi|98978464|gb|ABF54615.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] Length = 275 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 2/143 (1%) Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + N + L G + + + + ++ +A Sbjct: 134 GNVTDNTLAGAFDFQLPTGAPSDPASALVNVTIGLDGLVTATFANGEDQMLGKVAMATFP 193 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 T L W S + + I V++ EEL L+ + Sbjct: 194 TMSGLRPTGDAH--WQSTGESGPPTIDAATNGPMGAIRSGALERSNVDITEELVMLMAAQ 251 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +++ + K I ++ QT++ Sbjct: 252 RNFQANAKAIEGASQLTQTIIGL 274 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 36/166 (21%), Gaps = 14/166 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55 F + + + + I NI NA + R + Sbjct: 2 SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRL 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + + +K + + + Y Sbjct: 62 NGITQQFTQGSYESSEKTLDLAIVGEGLFIVK----GEPPREQVSYTRNGSFEPTPDGYV 117 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + L +D V N A + Q ++ Sbjct: 118 IDTTGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASALVN 163 >gi|71282391|ref|YP_268224.1| flagellar basal body rod protein FlgG [Colwellia psychrerythraea 34H] gi|71148131|gb|AAZ28604.1| flagellar basal-body rod protein FlgG [Colwellia psychrerythraea 34H] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 62/208 (29%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ + ++ ++ ++ A + F + D Sbjct: 50 NQPGGRTAQDTEAPSGLMLGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ + + V+ ++ ++ + Sbjct: 110 GSSAYSRNGQFTMDDEGNMVTPGAGYMIQPQVTIPEDALSIIVSQDGEVSVTLQGQPDPA 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N E S + + + + + T VN Sbjct: 170 VVGQINLINFVNPTGLQPIGQNLYT--ETAVSGAPQEGVPGLEGYGMLVQGALETSNVNT 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIESQRVYEMNSKVISAVDEML 255 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/203 (9%), Positives = 49/203 (24%), Gaps = 19/203 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + A ++ + ++ A I N+ NA + + + P T Sbjct: 1 MNAALWISKTGLDAQTKDIAVISNNLANASTIGFKKSRAVFEDLLYQNINQPGGRTAQDT 60 Query: 56 RSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + M + +H I L + +S + Sbjct: 61 EAPSGLMLGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPDGSSAYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163 E + + + E+ +V + +Q A I+ + Sbjct: 121 TMDDEGNMVTPGAGYMIQPQVTIPEDALSIIVSQDGEVSVTLQGQPDPAVVGQINLINFV 180 Query: 164 RRFLSELTVVNDAIKFKTASKHD 186 + N + + Sbjct: 181 NPTGLQPIGQNLYTETAVSGAPQ 203 >gi|163738060|ref|ZP_02145476.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] gi|163742544|ref|ZP_02149930.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161384129|gb|EDQ08512.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161388676|gb|EDQ13029.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 54/181 (29%), Gaps = 2/181 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ L + + ++ + + + + ++ F Sbjct: 76 AISIHLAQGALSQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGALKRSAEGLVVTSDGFT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 NV A + + +AG L N ++ Sbjct: 136 VSPDITIPSDARNVSINADGEVYAYFDETAEGQLMGQLTLAGFANPKGLEALGSNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + Y V+ E++ LI+ ++ Y ++ K+I D+M Sbjct: 194 ETEASGAATVASPGENGLGTLRQGYLEASSVDAVREVTELIEAQRGYEMNAKVISAVDQM 253 Query: 472 L 472 + Sbjct: 254 M 254 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 31/150 (20%), Gaps = 28/150 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + +I N+ N + Y R Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62 Query: 47 PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + ++ L + + + + + S Sbjct: 63 PTGVQVGLGVRASAISIHLAQGALSQTGNDLDVAIDGKGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ S E + + ++ Sbjct: 117 DGALKRSAEGLVVTSDGFTVSPDITIPSDA 146 >gi|153834448|ref|ZP_01987115.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156973589|ref|YP_001444496.1| flagellar basal body rod protein FlgG [Vibrio harveyi ATCC BAA-1116] gi|269961601|ref|ZP_06175963.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] gi|148869144|gb|EDL68176.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156525183|gb|ABU70269.1| hypothetical protein VIBHAR_01292 [Vibrio harveyi ATCC BAA-1116] gi|269833642|gb|EEZ87739.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ ++ S + + ++ N Sbjct: 110 GNIGYTRNGQFTLDGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRIRGEQNNV 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + I +S VN+ Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/229 (6%), Positives = 46/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + A+I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 E + I E+ + + ++ + + + Sbjct: 121 TLDGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQLTITDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTE 229 >gi|90422996|ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas palustris BisB18] gi|90105010|gb|ABD87047.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 599 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 48/382 (12%), Positives = 103/382 (26%), Gaps = 13/382 (3%) Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 SK ++ +K T ++ A N + V D S + Sbjct: 225 SKNATAITGATKLSGASPSDSTNVNFAVGDTVKVNGTDIIVTASGGLDDGTHIPVDSTIT 284 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 L ++ ++ + L +S G +++ + VV T G Sbjct: 285 NLLGKIDALSGNNVTPSTVTGGGVVLHTGTAADLSIVSTSAGFASLGLTSPVTVVRTGGG 344 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + V N ++ + +G V A + + Sbjct: 345 SVGTGKVVGSDNQTFLDESISGGATTAYDGNGAPVPVQFRWAKTDSATLGVGHNDTWNLF 404 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPG------LFIADGIKDLDNKLCQGISETI 338 N A + N E P + L N + + Sbjct: 405 YQTNPAATGANTSWVNVGTNFSFGSNGEMNPVIGALTLTNLTVSGVSLGNVTMSFGTGGL 464 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N + +++ ++ Y + N + VA N Sbjct: 465 TQFADTNGNVQVNQMQQDGYAAGQLTSVSVSNEGRVVGAYSNGRNIDLAEVSVATFNGAN 524 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + + N S + + + + ++ +E + LI +Q+Y Sbjct: 525 FLKRL--DGGAFEVTNESGAALFGKGGSISGSSL-----EASNTDIADEFTKLIVTQQAY 577 Query: 459 NISNKLIMFTDKMLQTLLEGVK 480 + + K+I + M+ LL ++ Sbjct: 578 SANTKVITTANTMVSDLLNVIR 599 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 49/467 (10%), Positives = 94/467 (20%), Gaps = 38/467 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + S +I NI N+ + R DT Q + + Sbjct: 1 MGIFGALTTSVAGLRTQSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNDQQLAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109 + + ++ + + A + Sbjct: 61 TAKSRSTNTIQGSVQSASVSTYMAINGDGFFAVQKPGSFSDNNPVFTGVNNYTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID + + Q + + Sbjct: 121 DKNGYLVNGAGYYLQGVTIDRTTGNPSGGAPAILKFQNDFLPS---------------QQ 165 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 T ++ + HD LL+ + T G + Sbjct: 166 TTKISYRANLASYPLTSKHDTSVPGSELLRPADFSVNPQVNGTQPPPFGDNTKSGLQVNS 225 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 I S S+S + G+ + L V Sbjct: 226 KNATAITGATKLSGASPSDSTNVNFAVGDTVKVNGTDIIVTASGGLDDGTHIPVDSTITN 285 Query: 290 LDEMARVLIGSFSEKDPIAGN-----SENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 L L G+ + G + L I + + Sbjct: 286 LLGKIDALSGNNVTPSTVTGGGVVLHTGTAADLSIVSTSAGFASLGLTSPVTVVRTGGGS 345 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + Y F G+ N T + Sbjct: 346 VGTGKVVGSDNQTFLDESISGGATTAYDGNGAPVPVQFRWAKTDSATLGVGHNDTWNLFY 405 Query: 405 RNSIGWLEKNRSDSHDLHMKSQV-------VFNHISESYSNTVGVNL 444 + + N S + S V ++ + GV+L Sbjct: 406 QTNPAATGANTSWVNVGTNFSFGSNGEMNPVIGALTLTNLTVSGVSL 452 >gi|262396033|ref|YP_003287886.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262339627|gb|ACY53421.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 243 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 59 TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 118 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 119 EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 176 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 177 TEASGPADELIAGEDGAGLIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 236 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 26/137 (18%), Gaps = 33/137 (24%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI------------------------SPENVTVVTQR 56 +I N+ N + + R + V VV + Sbjct: 1 MTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNEVPSGIQLGSGVRVVGTQ 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + Q F ++ + + E Sbjct: 61 KV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMYTRNGQFHVNSEGLMV 111 Query: 117 NLSEDILGKTVIDNAEE 133 N L + Sbjct: 112 NSQGLPLEPQIQIPDNA 128 >gi|57237001|ref|YP_178802.1| flagellar basal body rod protein FlgG [Campylobacter jejuni RM1221] gi|86149818|ref|ZP_01068047.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153387|ref|ZP_01071591.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597119|ref|ZP_01100355.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|121613571|ref|YP_001000394.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|148926663|ref|ZP_01810344.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414985|ref|YP_001482241.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81116] gi|167005337|ref|ZP_02271095.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355540|ref|ZP_03222311.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562337|ref|YP_002344116.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956107|ref|ZP_06373594.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|57165805|gb|AAW34584.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni RM1221] gi|85839636|gb|EAQ56896.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843113|gb|EAQ60324.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249438|gb|EAQ72398.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|88190808|gb|EAQ94781.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|112360043|emb|CAL34835.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845182|gb|EDK22277.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385949|gb|ABV52264.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346774|gb|EDZ33406.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792427|gb|EFC31209.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925954|gb|ADC28306.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni IA3902] gi|307747622|gb|ADN90892.1| Flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni M1] gi|315058161|gb|ADT72490.1| Flagellar basal-body rod protein flgG [Campylobacter jejuni subsp. jejuni S3] gi|315926812|gb|EFV06186.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931897|gb|EFV10852.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 327] Length = 263 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 91 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + L + S+ + F ++ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157 + E N L + T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|39998142|ref|NP_954093.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985088|gb|AAR36443.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|298507079|gb|ADI85802.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens KN400] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 4/184 (2%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 S + + I+ D + + + Q R S Sbjct: 81 FSEGNINQTGNELDIAIEGDGFFQIQMPDGTTTYSRAGSFKRDDQGRVVTSDGYPMLPEL 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 G ++ +A + L RN + E + S Sbjct: 141 VVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQLATFSNPSGLTALGRNL--FQESDSS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + Q +++ + V++ EE+ +I +++Y +++K + D+MLQ Sbjct: 199 GTPTTGTPGQNGIGTLAQGFLEMSNVSVMEEMVNMIVGQRAYEVNSKAVQAADEMLQQAN 258 Query: 477 EGVK 480 + Sbjct: 259 NLRR 262 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 7/180 (3%), Positives = 33/180 (18%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + + N+ N + + + Sbjct: 1 MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNLKTSGAPSTSST 60 Query: 46 -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + K + ++ + + F ++ + Sbjct: 61 QVPSGIQIGLGAKLAAVTKLFSEGNINQTGNELDIAIEGDGFFQIQ------MPDGTTTY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + ++ + + I Sbjct: 115 SRAGSFKRDDQGRVVTSDGYPMLPELVVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQ 174 >gi|251772412|gb|EES52979.1| flagellar basal-body rod protein FlgG [Leptospirillum ferrodiazotrophum] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 10/148 (6%), Positives = 23/148 (15%), Gaps = 28/148 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A + + I N+ N + Y R+ Sbjct: 1 MFRSLWNAASGMESQQANLDVITNNLANVNTTGYKRQRANFQDLMYQTMVPPGEASSLEG 60 Query: 46 --SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 P + V L ++ + F + Sbjct: 61 NQVPTGLQVGMGSRLASVQKVFLQGSLRTTNNPLDVAIQGNGFFTV------KLPDGRQA 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128 ++ Sbjct: 115 YTRDGTFNIDSHGRIVTPEGLTTDPQIV 142 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 2/189 (1%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 ++L + +V + + F + D + + I + + Sbjct: 69 VGMGSRLASVQKVFLQGSLRTTNNPLDVAIQGNGFFTVKLPDGRQAYTRDGTFNIDSHGR 128 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 + D V K ++ S +A L Sbjct: 129 IVTPEGLTTDPQIVVPKTAKSIHVAPDGEVTATVAGQSAPVKLGQLVLAQFINPAGLSSR 188 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N ++E + S L + + VN+ EEL ++ +++Y + Sbjct: 189 GNNL--FMETSASGKPTLSNPGVNGAGRLQSGFLEASNVNVAEELVNMVIGQRAYQMDAS 246 Query: 464 LIMFTDKML 472 I ++ML Sbjct: 247 SIRTVNRML 255 >gi|153953785|ref|YP_001394550.1| hypothetical protein CKL_1160 [Clostridium kluyveri DSM 555] gi|219854401|ref|YP_002471523.1| hypothetical protein CKR_1058 [Clostridium kluyveri NBRC 12016] gi|146346666|gb|EDK33202.1| FlgE [Clostridium kluyveri DSM 555] gi|219568125|dbj|BAH06109.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 348 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 37/329 (11%), Positives = 87/329 (26%), Gaps = 6/329 (1%) Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 I I+N + +N + V ++ + ++ I + Sbjct: 22 IGNNIANSSTTAYKTQSMNFQDMISQNLSDPSAPSTSIGGVNGKQSGLGVQVAGISTDFT 81 Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + T++ F TS+ I ID G + I+A Sbjct: 82 TGSMGTTNRNLDFAIDGTGYFVVGTGKLGETSDDTGISIDEDNNILGGGDNEVENTIEAH 141 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 S Q L + + D N+ + L + + Sbjct: 142 YSRDGSFYLDTQGNLINQNGYRVMGYLVTDEN--NTSTITYLQNDTEDTFQNAVQFVDAN 199 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 T+ S + ++ + DS + Sbjct: 200 GTVTSVTDKLVPLSIPNYITKDDQLVKVKSFSVGKDGIITAQLTDSTTAVLGQIAMVSFQ 259 Query: 396 TNVTLLEYARNSIGWLEKNRS----DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 L++ N + + + I++ + V+L ++ + + Sbjct: 260 NEGGLVKEGGNLYTTSSNSGQPIVMSGKGAENDNSAGYGKITQGFLEMSNVDLAQQFTDM 319 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +++ + K+I D +L+ L+ + Sbjct: 320 IVATRAFQANGKMITNGDTILEDLINLKR 348 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 21/296 (7%), Positives = 59/296 (19%), Gaps = 25/296 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 +L + Q+ I NI N+ Y + + S Sbjct: 1 MLPSMYSGISGLRANQQKLNVIGNNIANSSTTAYKTQSMNFQDMISQNLSDPSAPSTSIG 60 Query: 49 NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V V + + + + + + + + + + Sbjct: 61 GVNGKQSGLGVQVAGISTDFTTGSMGTTNRNLDFAIDGTGYFVVGTGKLGETSDDTGISI 120 Query: 103 YISKLRDSLESYSKNLSEDILGK-----TVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + QN + + Sbjct: 121 DEDNNILGGGDNEVENTIEAHYSRDGSFYLDTQGNLINQNGYRVMGYLVTDENNTSTITY 180 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 L+ F + + V+ + + + ++ ++ S Sbjct: 181 LQNDTEDTFQNAVQFVDANGTVTSVTDKLVPLSIPNYITKDDQLVKVKSFSVGKDGIITA 240 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 + S L + E + G + + A Sbjct: 241 QLTDSTTAVLGQIAMVSFQNEGGLVKEGGNLYTTSSNSGQPIVMSGKGAENDNSAG 296 >gi|38570330|gb|AAR24613.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni] Length = 263 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 91 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 18/208 (8%), Positives = 40/208 (19%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKESRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + L + S+ + F ++ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114 Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + E N L V T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|148976396|ref|ZP_01813102.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] gi|145964219|gb|EDK29475.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ + + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ + ++ + + ++ N Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYPLQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNV 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + +I +S T VN+ Sbjct: 170 VVGQITITDFVNPGGLEPVGQNL--YLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 48/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA + + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + I E+ V N + ++ + + + Sbjct: 121 TLNGDGAIVTSGQGYPLQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITITDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTE 229 >gi|254227985|ref|ZP_04921415.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|151939481|gb|EDN58309.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 261 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGPADELIAGEDGAGLIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 31/155 (20%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + + + Q F ++ Sbjct: 61 EVPSGIQLGSGVRVVGTQKV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + E N L + Sbjct: 112 IMYTRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNA 146 >gi|260437439|ref|ZP_05791255.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810071|gb|EFF69276.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 284 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/279 (8%), Positives = 75/279 (26%), Gaps = 12/279 (4%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 + + + N + Y + + + + ++ G ++ Sbjct: 17 TNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDDKPIPAQVGTGARTAAI 76 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 I + + L ++ + + + ++ Sbjct: 77 TTHFSQGSLIDSTSTFAFGLEGDGLFGLMNPDGEIVYTRNGDFTVGKTNDGGFM------ 130 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + + ++ Q+ + F + V + H + Sbjct: 131 ---ICSSDGYPVVDSDGNPIQFSGEYDVSNLVITSDGSFYYRVIEEKPDENGNMHKTERL 187 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD-SHDLHMKSQVVFNHISESYSNTVG 441 + V L + + E S + + +++ + + Sbjct: 188 DDLETRMGVFQFTNPSGLDSIGSSL--YKETEASGIAMEEGTYTELKRTKVCQGRLEASN 245 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + +E+ LI +++Y +++K I D ML + + Sbjct: 246 VQVADEMVNLIVAQRAYEMNSKAIQAADDMLGQANQLKR 284 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 44/227 (19%), Gaps = 28/227 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49 ++ A + I N+ N ++ Y + S Sbjct: 1 MMRALYTAASGMIAQQTNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDD 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T + + L +S L Sbjct: 61 KPIPAQVGTGARTAAITTHFSQGSLIDSTSTFAFGLEGDGLFGLMN------PDGEIVYT 114 Query: 103 YISKLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + S D D + V + E Sbjct: 115 RNGDFTVGKTNDGGFMICSSDGYPVVDSDGNPIQFSGEYDVSNLVITSDGSFYYRVIEEK 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + + ++D + LD L K +E GI Sbjct: 175 PDENGNMHKTERLDDLETRMGVFQFTNPSGLDSIGSSLYKETEASGI 221 >gi|315636319|ref|ZP_07891569.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] gi|315479408|gb|EFU70091.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 55/248 (22%), Gaps = 6/248 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++ + D ++ + + Sbjct: 11 GMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN---PQYR 345 + + + + I + + +N Sbjct: 71 GVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L+ V G + +A L Sbjct: 131 GNGYPLQPEIVVPNNVKDISVGTDGLVTAKDP-QTGDTIELGQITLADFINPAGLTPLGD 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +++ S + F + +S + V L E+ LI +++Y ++K I Sbjct: 190 SL--FMQSEASGPVVEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLITAQRAYEANSKAI 247 Query: 466 MFTDKMLQ 473 D ML Sbjct: 248 TTADNMLD 255 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 29/241 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N Q NI N + + + Sbjct: 1 MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + V + + L + + + + F + + Sbjct: 61 LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQI------TLPSGETAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + E N + L V +N +++ + D + ++ Sbjct: 115 SRNGNFKLNEEGTIVNGNGYPLQPEIVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 +++ + + AS K S + + + N ++ Sbjct: 175 LADFINPAGLTPLGDSLFMQSEASGPVVEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLI 234 Query: 220 Y 220 Sbjct: 235 T 235 >gi|260767767|ref|ZP_05876702.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260617276|gb|EEX42460.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179401|gb|ADT86315.1| flagellar basal body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 3/178 (1%) Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + E I ++ + + L+ Sbjct: 81 HTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNDEGVIVTSGSGYPLQPE 140 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + G + N+ L +N +L Sbjct: 141 IVIPDDAISITVGNDGEVSVRVR-GQQDNQVLGQITTVDFINPGGLEPIGQNL--YLPTG 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + ++ +S + VN+ EEL +I+ ++ Y +++K+I DKM+ Sbjct: 198 ASGDPQEGVPGLDGLGNVRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISAVDKMM 255 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/226 (7%), Positives = 48/226 (21%), Gaps = 20/226 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQR-- 56 ++ + A+I N+ NA + + + P + Sbjct: 4 ALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELP 63 Query: 57 -----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 + + + + + + Sbjct: 64 SGLMLGAGSKVVATQKVHTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLN 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + I ++ V N + V+ + + + + Sbjct: 124 DEGVIVTSGSGYPLQPEIVIPDDAISITVGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183 Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 184 GLEPIGQNLYLPTGASGDPQEGVPGLDGLGNVRQSMLESSNVNVTE 229 >gi|330889080|gb|EGH21741.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. mori str. 301020] Length = 100 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + A L N +LE S + + ++ Sbjct: 4 ATPQIIGNIQTADFINPAGLQAIGGNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENS 61 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V+ EEL +I +++Y +++K+I D+MLQ L + Sbjct: 62 NVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 98 >gi|291334032|gb|ADD93707.1| flagellar basal body FlaE domain protein [uncultured marine bacterium MedDCM-OCT-S04-C749] Length = 210 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 G + Y + + + N L E ++S + +L + + + Sbjct: 105 GDGRIEASYGTEVSYPVSTVALGVFSNNNGLKELGGGIYAQ--TDKSGAVNLGAPADLGY 162 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + VN+ +EL+ +IK +Q +N S +L+ +M++ L Sbjct: 163 ASLKSGGLEASNVNITDELTAMIKAQQQFNGSARLMQTNSEMVEKL 208 >gi|163802601|ref|ZP_02196493.1| polar flagellar FlgG [Vibrio sp. AND4] gi|159173684|gb|EDP58503.1| polar flagellar FlgG [Vibrio sp. AND4] Length = 262 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ A + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ ++ S + + ++ N Sbjct: 110 GNIGYTRNGQFTLDGEGTLVTSGSGYAVEPEIVIPEDAISITVGTDGEVSVRVRGEQNNV 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + I +S VN+ Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 30/159 (18%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + A+I N+ NA + + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 E + I E+ + + EV Sbjct: 121 TLDGEGTLVTSGSGYAVEPEIVIPEDAISITVGTDGEVS 159 >gi|307718428|ref|YP_003873960.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] gi|306532153|gb|ADN01687.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] Length = 264 Score = 68.1 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEY 403 SN L + + F+ + ++ + + + LL Sbjct: 130 TSNGYRLIPEIVLPEGFIADTLAVSEDGRVTVKVPGQDDPVEVGQIQLYRFVNPAGLLAV 189 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N + N S + + V++ E+ +I +++Y +++K Sbjct: 190 GDNL--YKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEMIVAQRAYELNSK 247 Query: 464 LIMFTDKMLQTLLEGVK 480 + +D ML T + + Sbjct: 248 AVQTSDSMLGTAVNLKR 264 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 8/156 (5%), Positives = 29/156 (18%), Gaps = 27/156 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + ++ N+ N + + + Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 47 -----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V + +K L + + F + + Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVL------LYDGTYAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + L ++ + Sbjct: 115 TRDGSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADT 150 >gi|89072313|ref|ZP_01158892.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] gi|89051845|gb|EAR57297.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] Length = 261 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + N ++ + D + +A L Sbjct: 130 NGQGLPLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITLAKFINPAGLEAVGG 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + E S + + + V + EE+ +I +++Y ++ K++ Sbjct: 190 NL--YKETQASGQPQEMIAGIDGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVV 247 Query: 466 MFTDKML 472 D ML Sbjct: 248 SAADDML 254 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 30/154 (19%), Gaps = 27/154 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + F ++ Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGEVMF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + E N L + E Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQIPEEANT 148 >gi|218703527|ref|YP_002411046.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|218430624|emb|CAR11490.1| Flagellar basal-body rod protein (flgG-like) (Distal rod protein) [Escherichia coli UMN026] Length = 303 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 52/191 (27%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 F + + + + + ++ + + + VN Sbjct: 109 QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 168 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S G + + + +N A Sbjct: 169 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSA 228 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +LE S + + + ++ V++ E+ +I V+++Y ++ K+ Sbjct: 229 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 288 Query: 465 IMFTDKMLQTL 475 + D MLQ + Sbjct: 289 VSAADDMLQYI 299 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 29/243 (11%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45 ++ A ++ + + ++I NI N + + R M Sbjct: 42 TMNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQN 101 Query: 46 --SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 P + + + + +A+ + Q F ++ + Sbjct: 102 NIMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIA 155 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 L+ + + N L + A F + D+D ++ Sbjct: 156 YTRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQL 215 Query: 161 SNLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + ++ AS + + + + + G + + N + Sbjct: 216 TLVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAM 275 Query: 219 VYT 221 + Sbjct: 276 ITV 278 >gi|212637787|ref|YP_002314312.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212559271|gb|ACJ31725.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 261 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 53/206 (25%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ ++ + ++ +V + F + Sbjct: 51 QPGGQVDEQNELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ + + + + Sbjct: 111 DLSFSRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTITIATDGIVSAQMAGQADAQEL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + I + VN+ E Sbjct: 171 GQITLVNFTNPAGLEARGNNL--YRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 55/242 (22%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R + + + Q F ++E Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNGDLSFS----- 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E L + E + T ++ AD + +I+ Sbjct: 116 -RDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTITIATDGIVSAQMAGQADAQELGQIT 174 Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + N+ + AS + + + + G + V ++ Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVEEMVEMI 234 Query: 220 YT 221 T Sbjct: 235 ST 236 >gi|269836597|ref|YP_003318825.1| hypothetical protein Sthe_0565 [Sphaerobacter thermophilus DSM 20745] gi|269785860|gb|ACZ38003.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 2/87 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L +N S + F + V+L Sbjct: 166 EVGRITLARFANPQGLAAAGQNRFA--ATVASGPPQVGTPGADGFPALQSGALEASTVDL 223 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKM 471 E+++ LI+ +++Y ++ + + D+M Sbjct: 224 AEQMTTLIEAQRAYTVNARALQTLDEM 250 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 34/172 (19%), Gaps = 28/172 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + +++ N + ++ N+ N + Sbjct: 1 MTSLYATGANGLRVQQARLDAVANNVANLGTTGFKAARVDMVDMPPQPLEVARAGGAADP 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 E VT+ + + + L + + Sbjct: 61 VTEIGEGVTIGGISRVFEP---GTPRPTGNPLDVAILGPNTF-----FVLTTPDGQTLYT 112 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + R + D L + V R + + + + Sbjct: 113 RDGQFRPDSTGQLVTPAGDRLSPPITLPPGASVTEVTPEGRILATLPGEVNP 164 >gi|213421609|ref|ZP_03354675.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 147 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 2/146 (1%) Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + Q + + + K + ++ +Y + + Sbjct: 4 GATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVL 63 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A N L N W S L F ++ V+L + Sbjct: 64 GQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSK 121 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 EL +I +++Y + + I D++L Sbjct: 122 ELVNMIVAQRNYQSNAQTIKTQDQIL 147 >gi|291518270|emb|CBK73491.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 75/269 (27%), Gaps = 6/269 (2%) Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 G + + + + + + + +A + K + Sbjct: 6 WSGASGMKGQQVQVDTIANNLANVNTMAYKSQSAQFKTLLYQTLEAESTNAQGETKPTSA 65 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + V + ++ S + I V ++ + G + Sbjct: 66 QVGLGTRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTWAIGPT 125 Query: 336 ETICVNPQYRS---NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + + L N+ + + + Sbjct: 126 GDKVLTTSDGYQVLDQAGRPITLPRTAGELGFAVNIDDGSCSYKDQAGNIIRTGQSIALY 185 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFL 451 V L + N + E + S + V + I++ Y VN+ +E+ L Sbjct: 186 QFTNRVGLNKIGENL--YDESDASGEPISEWNTAGVTRSQIAQGYLEGSNVNVADEMVNL 243 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I +++Y +++K I +D ML+ + Sbjct: 244 IIAQRAYEMNSKAITTSDTMLEQANNLKR 272 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 48/224 (21%), Gaps = 14/224 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49 ++ + Q +I N+ N + Y + E Sbjct: 1 MVRSLWSGASGMKGQQVQVDTIANNLANVNTMAYKSQSAQFKTLLYQTLEAESTNAQGET 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 Q + + + + E A + Sbjct: 61 KPTSAQVGLGTRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTW 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 ++ + G V+D A + +A E+ D + + Sbjct: 121 AIGPTGDKVLTTSDGYQVLDQAGRPITLPR-TAGELGFAVNIDDGSCSYKDQAGNIIRTG 179 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ++ + + D+ D + ISE Sbjct: 180 QSIALYQFTNRVGLNKIGENLYDESDASGEPISEWNTAGVTRSQ 223 >gi|303328380|ref|ZP_07358818.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861710|gb|EFL84646.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 261 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 +++ + + P+ L RN S + + Sbjct: 149 SISSTGHIAALDSEGQEIAGAEIPLYTFINPAGLDARGRNLYTP--TEASGAETEGVPGT 206 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ + V + +E+ +I +++Y +++K I +D ML ++ + Sbjct: 207 DNVGTLAQGFLEMSNVEVVDEMVNMIVGQRAYEVNSKAIQTSDSMLGMAVQLKR 260 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/238 (7%), Positives = 50/238 (21%), Gaps = 31/238 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ I N+ N + + + Sbjct: 1 MMRSLYTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMKIAGSITEGDN 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K +A+ F + D Sbjct: 61 RLPVGIQVGMGVRPTAVHKFFTQGDFQNTGNALDVAVEGDGFFQV-------DVNGELMY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEIELE 159 + + + + IL AE + +++ + + Sbjct: 114 TRAGSFKLNQDGTVVTANGYILQPEFAVPAETKNISISSTGHIAALDSEGQEIAGAEIPL 173 Query: 160 ISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + N + ++ + D L Q E+ + + N Sbjct: 174 YTFINPAGLDARGRNLYTPTEASGAETEGVPGTDNVGTLAQGFLEMSNVEVVDEMVNM 231 >gi|315124200|ref|YP_004066204.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017922|gb|ADT66015.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 263 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 91 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVRFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + L + S+ + F ++ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157 + E N L + T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVRFINPAGLHSMGDNLYLETGASGAP 202 >gi|209695760|ref|YP_002263690.1| flagellar basal body rod protein FlgG [Aliivibrio salmonicida LFI1238] gi|208009713|emb|CAQ80017.1| flagellar basal-body rod protein FlgG (distal rod protein) [Aliivibrio salmonicida LFI1238] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 3/185 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ +V ++ + F + D + + T+ + Sbjct: 72 SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQFTLNSEGAMVTT 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406 S + + ++ + L +N Sbjct: 132 GSGYPLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQITTVDFINPGGLEPVGQN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +L S I +S VN+ EEL +I+ ++ Y +++K+I Sbjct: 192 L--YLPTGASGDPQEGTPGLEGLGAIRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249 Query: 467 FTDKM 471 DKM Sbjct: 250 AVDKM 254 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/203 (6%), Positives = 43/203 (21%), Gaps = 19/203 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 + ++ + A+I N+ NA + + + +NV +S Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 62 -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + + Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + ++ + + + + Sbjct: 121 TLNSEGAMVTTGSGYPLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQITTVDFI 180 Query: 164 RRFLSELTVVNDAIKFKTASKHD 186 E N + + Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQ 203 >gi|149188068|ref|ZP_01866363.1| polar flagellar FlgG [Vibrio shilonii AK1] gi|148838056|gb|EDL54998.1| polar flagellar FlgG [Vibrio shilonii AK1] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 69/208 (33%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ ++ ++ + + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ ++ S ++ + ++ + Sbjct: 110 GNIGYSRNGQFTLNDEGTIVTSGSGYALEPEIAIPEDAISITVGTDGEVSVRVRGQQDNQ 169 Query: 386 FIFDPVA-GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + + F I +S T VN+ Sbjct: 170 VVGNITTVDFINPGGLEPIGQNL--YLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/229 (6%), Positives = 49/229 (21%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + V+ + + + + Sbjct: 121 TLNDEGTIVTSGSGYALEPEIAIPEDAISITVGTDGEVSVRVRGQQDNQVVGNITTVDFI 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + ++ LD + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNVTE 229 >gi|319787119|ref|YP_004146594.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] gi|317465631|gb|ADV27363.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] Length = 261 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 2/213 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G A Q+ + ++ A+ ++ A + F + D Sbjct: 51 QPGGSTSAQTQLPSGLQLGTGVRVVSTAKDFQQGNPQQTGRALDVMINGRGFFEVLMPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + S + + ++ + G + ++ + D Sbjct: 111 TSAYTRDGSFQVNAQGELVTSSGYPVQPGIQVPEGAQSMTIGTDGTITVQMAGDGQALEI 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N ++E S + + VN+ E Sbjct: 171 GALTLTDFINPAGLQARGENL--YMETTASGPAQNGTPGLNGLGLVEQGALEGSNVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 EL +I+ +++Y ++ K I TD ML L V Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 38/164 (23%), Gaps = 15/164 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 + A+ + + + + N+ N + + R + + T Sbjct: 1 MNQALWVAKTGLDAQQTRMSVVANNLANTNTTGFKRDRANFEDLLYQQVRQPGGSTSAQT 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-------DHYNNSPTHYISKL 107 Q + V ++ QQ Q ++M S Sbjct: 61 QLPSGLQLGTGVRVVSTAKDFQQGNPQQTGRALDVMINGRGFFEVLMPDGTSAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + + + S + + T ++ D Sbjct: 121 QVNAQGELVTSSGYPVQPGIQVPEGAQSMTIGTDGTITVQMAGD 164 >gi|193222346|emb|CAL62046.2| Flagellar basal-body rod protein FlgG (Distal rod protein) [Herminiimonas arsenicoxydans] Length = 260 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + D + S Q ++ F + ++ + + Sbjct: 107 MPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAITIPENATSITISRDGIVSVTVSGTTA 166 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 +A L+ N ++E S + + + + ++Y T V Sbjct: 167 ATEIGALQLATFINPAGLMSRGENL--YVETTASGTANTNTPGSNGAGLLKQNYVETSNV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 N+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 225 NVVEELVSMIQTQRAYEINSKAITTSDQMLQRLTQI 260 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/262 (8%), Positives = 55/262 (20%), Gaps = 34/262 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ + Q I N+ N + R + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L S+A F + Sbjct: 61 ELPSGLQLGTGVRPVATERIH---TQGNLQLTSNAKNLAIEGDGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + S + I E + V + E+ Sbjct: 112 TAYTRDGSFQTDNQGQMVTSSGFP-IQPAITIPENATSITISRDGIVSVTVSGTTAATEI 170 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 L F++ +++ + + + + + T N + + Sbjct: 171 GALQLATFINPAGLMSRGENLYVETTASGTANTNTPGSNGAGLLKQNYVETSNVNVVEEL 230 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 V +E + I Sbjct: 231 VSMIQTQRAYEINSKAITTSDQ 252 >gi|169831888|ref|YP_001717870.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] gi|169638732|gb|ACA60238.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] Length = 246 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 16/198 (8%), Positives = 45/198 (22%), Gaps = 16/198 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + ++ NI N + + R+ + + ++ Sbjct: 1 MIRGVYTAASGMLAGQTRLDAVAHNIANVNTTGFRRQVPVFAPYLQTAVGRHEKRVTPIG 60 Query: 63 FDKVLH--------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + Q E + + Sbjct: 61 TTSLGTVPTALVTDLTGGPVVQTGRTMDLALEGEGFFTVEREGQQLYTRAGSFKVDASGI 120 Query: 115 SKNLSEDIL--------GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + D + + F+++ E+ ++R A E + + Sbjct: 121 LVTRAGDPVLGERGPLKVGHDGFTVSADGRVFSSTGEELDRLRLTALPGRETWVRTPDGY 180 Query: 167 LSELTVVNDAIKFKTASK 184 L AI + Sbjct: 181 LMTGEATAPAINTRVHQG 198 Score = 44.3 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 W+ + + + + Y V+L EL L+ + Y + ++ Sbjct: 172 TWVRTPDGYLMTGEATAPAINTRVHQGYLEGSNVHLAVELVDLLLASRLYAANQRVARTQ 231 Query: 469 DKMLQTLLEGV 479 D +++ + V Sbjct: 232 DTLVEKAINQV 242 >gi|114706771|ref|ZP_01439671.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] gi|114537719|gb|EAU40843.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] Length = 260 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 18/240 (7%), Positives = 47/240 (19%), Gaps = 34/240 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R T Sbjct: 3 ALAIAATGMNAQETNVEVIANNIANVNTTGFKRARAEFTDLLYQVERAKGVAAAGAEGVV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + R+ + L + + + + ++ Sbjct: 63 PEGAQLGLGVRLAAIRNVH---LQGALKETGNKLDLALNGEGWFQIQ------GPGGAIR 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E L ++ + A N + + ++ + +L + Sbjct: 114 YTRDGAFNTNAEGQIVTLDGYLVDPELTVPANTSEIVVNEAGQVYARVEGELQDVGQLTL 173 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + AS + + + ++ Sbjct: 174 ATFANNAGLHAEGGNLFSETVASGAPVVGVPGDPGYGVVHQGYLEDSNVDPVKEISELIS 233 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + + ++ +A N L N E S + Sbjct: 141 TVPANTSEIVVNEAGQVYARVEGELQDVGQLTLATFANNAGLHAEGGNLFS--ETVASGA 198 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + + + Y V+ +E+S LI +++Y +++K+I D+M Sbjct: 199 PVVGVPGDPGYGVVHQGYLEDSNVDPVKEISELISAQRAYEMNSKIISAADEM 251 >gi|294853175|ref|ZP_06793847.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] gi|294818830|gb|EFG35830.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] Length = 210 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 9/191 (4%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLF-IADGIKDLDNKLCQGISETICVNPQYRS 346 L + + + N P + T + Sbjct: 13 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 72 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF------IFDPVAGINTNVTL 400 + + G+ + + + + ++ +A L Sbjct: 73 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 132 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 133 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 190 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 191 NSKVIQAADEM 201 >gi|289679029|ref|ZP_06499919.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 279 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/266 (9%), Positives = 47/266 (17%), Gaps = 13/266 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + S G L + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + +R +A S + + + Sbjct: 121 NMKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVA 174 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + Sbjct: 175 TFDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPD 234 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS 265 N T S N + G V ++ + Sbjct: 235 KNDLTFDSSGNLVTTAGAAVPTDSAN 260 >gi|328545505|ref|YP_004305614.1| flagellar basal-body rod protein FlgG [polymorphum gilvum SL003B-26A1] gi|326415246|gb|ADZ72309.1| Flagellar basal-body rod protein FlgG [Polymorphum gilvum SL003B-26A1] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 38/184 (20%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + Y R + Sbjct: 3 ALAIAATGMSAQQLNVEVIANNIANMNTTAYKRARAEFSDLLYQAERLQGVPNRGGEDPV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L + + + + + + Sbjct: 63 PEGAQLGLGVKTAAIRKLH---MQGTLTNTDNKLDLAIDGRGWFQV------TGPEGETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E L + ++ + V N S + ++ + + ++ Sbjct: 114 YTRAGSFNKNAEGRLVTLDGYGIEPAILFPPDTVDIIINESGQVFAQVAGELNPRELGQL 173 Query: 161 SNLR 164 + Sbjct: 174 ALTN 177 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 60/224 (26%), Gaps = 8/224 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 +++ + QL + N++N L I Sbjct: 41 SDLLYQAERLQGVPNRGGEDPVPEGAQLGLGVKTAAIRKLHMQGTLTNTDNKLDLAIDGR 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV------SKKFLWNVKNLAGYPDLIN 376 T + + + G ++ Sbjct: 101 GWFQVTGPEGETLYTRAGSFNKNAEGRLVTLDGYGIEPAILFPPDTVDIIINESGQVFAQ 160 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + + +V L N + E S + F I + Y Sbjct: 161 VAGELNPRELGQLALTNFANDVGLEPVGGNL--FRETPASGIGLDGVAGDPGFGVIRQGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ +E++ LI ++ Y +++K+I D M T+ +G++ Sbjct: 219 QEASNVDPVKEITELISAQRGYEMNSKVIQAADDMAGTVTKGIR 262 >gi|307546966|ref|YP_003899445.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] gi|307218990|emb|CBV44260.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] Length = 260 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S + N Q + + + + + +V Sbjct: 94 DLAINGKGFFQVRMPDGTTAYTRDGSFQLDENGQMVTANGYPLEPAIIIPQNALSVSIGE 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 I S + V+ L N + E S + + Sbjct: 154 DGIVSITEPGSSESNEVGQISVSSFVNPTGLESIGGNL--YRETTASGPRNEGIPGMNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +S+ Y T VN+ EE+ +I+ +++Y I++K + +D+ML L + Sbjct: 212 GRLSQGYVETSNVNVVEEMVGMIQTQRAYEINSKAVQTSDEMLARLTQL 260 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 30/150 (20%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + + I N+ N + + R + Sbjct: 1 MINSLWTAKTGLESQQVKLDVISNNLANVNTNGFKRSRAVFEDLLYQNLRQPGAQNNVQN 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + V T + + LH K + Sbjct: 61 RLPSGMQVGTGVR---PVATERLHTQGGLENTGNSRDLAINGKGFFQVRMPDGTTAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + L +I + Sbjct: 118 GSFQLDENGQMVTANGYPLEPAIIIPQNAL 147 >gi|157738176|ref|YP_001490860.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] gi|157700030|gb|ABV68190.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 55/248 (22%), Gaps = 6/248 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++ + D ++ + + Sbjct: 11 GMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN---PQYR 345 + + + + I + + +N Sbjct: 71 GVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L+ V G + +A L Sbjct: 131 GNGYPLQPEIVVPNNVKDISVGTDGLVTAKDP-QTGDTIELGQITLADFINPAGLTPLGD 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + +++ S + F + +S + V L E+ LI +++Y ++K I Sbjct: 190 SL--FMQSEASGDVIEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLITAQRAYEANSKAI 247 Query: 466 MFTDKMLQ 473 D ML Sbjct: 248 TTADNMLD 255 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 29/241 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N Q NI N + + + Sbjct: 1 MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + V + + L + + + + F + + Sbjct: 61 LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQI------TLPSGETAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + E N + L V +N +++ + D + ++ Sbjct: 115 SRNGNFKLNEEGTIVNGNGYPLQPEIVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQIT 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 +++ + + AS K S + + + N ++ Sbjct: 175 LADFINPAGLTPLGDSLFMQSEASGDVIEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLI 234 Query: 220 Y 220 Sbjct: 235 T 235 >gi|153001470|ref|YP_001367151.1| flagellar basal body rod protein FlgG [Shewanella baltica OS185] gi|151366088|gb|ABS09088.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS185] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGVSSSNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEISVKTPGTAD 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 11/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + S N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I + ++ E+ Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEIS 159 >gi|126175144|ref|YP_001051293.1| flagellar basal body rod protein FlgG [Shewanella baltica OS155] gi|217972600|ref|YP_002357351.1| flagellar basal body rod protein FlgG [Shewanella baltica OS223] gi|304409976|ref|ZP_07391595.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307302311|ref|ZP_07582069.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125998349|gb|ABN62424.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|217497735|gb|ACK45928.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS223] gi|304351385|gb|EFM15784.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306914349|gb|EFN44770.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%) Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G + ++ + + ++ ++ + + F + Sbjct: 48 TVNQAGGVSSSNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382 D + T+ Q + S +++ ++ ++ + Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVSVKTPGTAD 167 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N+ + L +N S + S I + T V Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 31/159 (19%), Gaps = 15/159 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA Y + + S N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + I + ++ EV Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVS 159 >gi|309779449|ref|ZP_07674210.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] gi|308921690|gb|EFP67326.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 59/178 (33%), Gaps = 2/178 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S I Q ++ + Sbjct: 82 TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + N +A L N E S Sbjct: 142 VPQNATSLTIGKDGVVTVTTPGTVNNTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L Sbjct: 200 TANLANPGSNGVGALNQNYVETSNVNVVEEMVNMIQTQRAYEINSKSVQTSDQMLEKL 257 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/255 (8%), Positives = 57/255 (22%), Gaps = 29/255 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + Q I N+ N + + R + T Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ F ++ Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + S + TV NA + + + + + Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTIGKDGVVTVTTPGTVNNTQVGTFQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++N ++ + AS V + + + V ++ Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGALNQNYVETSNVNVVEEMVNMI 234 Query: 220 YTSDGTTLFETVPRD 234 T + + Sbjct: 235 QTQRAYEINSKSVQT 249 >gi|283477482|emb|CAY73398.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM 12163] Length = 113 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 10/107 (9%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54 +FN A++ +++ + I NI NA N +Y RRD + S V V Sbjct: 2 NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + L +A + A + M +D N S + Sbjct: 62 VQRGYDAFINNELRGGITACAGHKTRYEQLAEIDNMLGNDETNPSVS 108 >gi|322380410|ref|ZP_08054616.1| flagellar hook protein FlgE [Helicobacter suis HS5] gi|321147200|gb|EFX41894.1| flagellar hook protein FlgE [Helicobacter suis HS5] Length = 601 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 46/403 (11%), Positives = 118/403 (29%), Gaps = 19/403 (4%) Query: 88 EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 E D++ ++++ ++L + + + + + +V+ + Sbjct: 208 EEYFLDENGEVITNRFLNQDANALANSDNEPLDLAMHRNLEIM---IVKGDMAQDLTFKY 264 Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 +K + +L+ L ++ I + + L ++ + + IG Sbjct: 265 GTGGPEKNEFHTLGDLKNLLKSKANLDLTIAKSKPDQVISPLMLQIKNPSDPEATLFIGG 324 Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI-------DGVVVS 260 + ++V I F + + + + Sbjct: 325 QMAEKLGWVASGMILKKGETRDSVNIRIPFYSTTTEIYDKAGDKYLLKSDFFMTNSKDPM 384 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + + ++L++RD + + G K PI N + P ++ Sbjct: 385 ATPPTEQKWDVESSILEMRDKTPITPKPVRQTITFDQAGKMQSK-PITLNFKGNPLVYSI 443 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + D ++ I Q LR+ + + + Sbjct: 444 NKSDDFESSDVPYEDSRIYQVSQDGKPKGILRNMRIDDDGIIHLSFSNGAIETMGRVGIA 503 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---MKSQVVFNHISESYS 437 +F + V L + + + S + L ++ F I Y Sbjct: 504 AFTNDQGLKKVG-----SNLFDISNATRNGRAVPLSGNPILGWDRDDGKLKFGKIMHKYL 558 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T VN L+ LI +++ Y+++ K D +++ + K Sbjct: 559 ETSNVNAGRSLTNLILMQRGYSMNAKAFTTGDDLIKEAINLKK 601 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 35/171 (20%), Gaps = 22/171 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59 + A + S+ N+ N + Y + +++ Sbjct: 1 MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60 Query: 60 KNM-----------FDKVLHAHSSAIGQQRLLQSFEALK---EMMSADDHYN-----NSP 100 +N D S + + + D + Sbjct: 61 RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + Y N + + + V + E + ++ Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYVYGIDLHKIKNGVLMAGNADAEAKILKGS 171 >gi|27363703|ref|NP_759231.1| flagellar basal body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37679149|ref|NP_933758.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|320157107|ref|YP_004189486.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] gi|27359819|gb|AAO08758.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37197891|dbj|BAC93729.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|319932419|gb|ADV87283.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 3/178 (1%) Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + + + + E I ++ + + L Sbjct: 81 HTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQFTLNGEGVVVTSGSGYPLEPE 140 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + G + N+ + L +N +L Sbjct: 141 IVIPEDAISITVGTDGEVSVRIR-GQQNNQVVGQITITDFVNPGGLEPIGQNL--YLPTG 197 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + +S T VN+ EEL +I+ ++ Y +++K+I DKM+ Sbjct: 198 ASGDPQEGVPGLDGLGEVRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 45/229 (19%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + ++ + A+I N+ NA + + + Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNT 60 Query: 57 S--------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 QLPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + ++ + + + Sbjct: 121 TLNGEGVVVTSGSGYPLEPEIVIPEDAISITVGTDGEVSVRIRGQQNNQVVGQITITDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + LD + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEVRQSMLETSNVNVTE 229 >gi|322378866|ref|ZP_08053283.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321148676|gb|EFX43159.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 601 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 47/387 (12%), Positives = 112/387 (28%), Gaps = 17/387 (4%) Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAE-EVVQNFNTSAREVQKIRADADKEIELEISNL 163 ++ + + N + L + N E +V+ + +K + +L Sbjct: 221 NRFLNQDANALANSDNEPLDLAMHRNLEIMIVKGDMAQDLTFKYGTGGPEKNEFHTLGDL 280 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + L ++ I + + L ++ + + IG + Sbjct: 281 KNLLKSKANLDLTIAKSKPDQVISPLMLQIKNPSDPEATLFIGGQMAEKLGWVASGMILK 340 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFI-------DGVVVSSNQGSAVPKGKIKALL 276 ++V I F + + + + + + ++L Sbjct: 341 KGETRDSVNIRIPFYSTTTEIYDKAGDKYLLKSDFFMTNSKDPMATPPTEQKWDVESSIL 400 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++RD + + G K PI N + P ++ + D ++ Sbjct: 401 EMRDKTPITPKPVRQTITFDQAGKMQSK-PITLNFKGNPLVYSINKSDDFESSDVPYEDS 459 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396 I Q LR+ + + + +F + V Sbjct: 460 RIYQVSQDGKPKGILRNMRIDDDGIIHLSFSNGAIETMGRVGIAAFTNDQGLKKVG---- 515 Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLH---MKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L + + + S + L ++ F I Y T VN L+ LI Sbjct: 516 -SNLFDISNATRNGRAVPLSGNPILGWDRDDGKLKFGKIMHKYLETSNVNAGRSLTNLIL 574 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ Y+++ K D +++ + K Sbjct: 575 MQRGYSMNAKAFTTGDDLIKEAINLKK 601 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 35/171 (20%), Gaps = 22/171 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59 + A + S+ N+ N + Y + +++ Sbjct: 1 MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60 Query: 60 KNM-----------FDKVLHAHSSAIGQQRLLQSFEALK---EMMSADDHYN-----NSP 100 +N D S + + + D + Sbjct: 61 RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + Y N + + + V + E + ++ Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYVYGIDLHKIKNGVLMAGNADAEAKILKGS 171 >gi|300024606|ref|YP_003757217.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] gi|299526427|gb|ADJ24896.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 8/219 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + L D + NQ+ R + + N L + Sbjct: 41 TDLLYQTDRAAGTLARDDDTMIPEGNQIGLGVRTVAIRHLSMQGALAPTSNKLDLALDGR 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS------KKFLWNVKNLAGYPDLIN 376 I T +N + G+V +V+ A Sbjct: 101 GYFQVQGENNEILYTRAGAFNKDANGQLVTLEGNVVIPNITIPSTATDVQINASGQVYAI 160 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + +A L N + E S + + F I + Y Sbjct: 161 IGATGQQQLLGQLSIANFANETGLDALGGNL--FRENQASGAAVIGNPGDSGFAKIHQGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + V+ +E++ LI +++Y +++K+I D M T+ Sbjct: 219 LESSNVDPVKEITELIAAQRAYEMNSKVISAADDMFSTI 257 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 41/184 (22%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A + I N+ N + + R T Sbjct: 3 ALSIAATGMSAQQTNVEVIANNVANINTTGFKRARAEFTDLLYQTDRAAGTLARDDDTMI 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V R + L S+ + + + ++ N Sbjct: 63 PEGNQIGLGVRTVAIRHLS---MQGALAPTSNKLDLALDGRGYFQVQ------GENNEIL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 L +++ + + N S + I A +++ ++ Sbjct: 114 YTRAGAFNKDANGQLVTLEGNVVIPNITIPSTATDVQINASGQVYAIIGATGQQQLLGQL 173 Query: 161 SNLR 164 S Sbjct: 174 SIAN 177 >gi|13472576|ref|NP_104143.1| flagellar basal body rod protein FlgG [Mesorhizobium loti MAFF303099] gi|14023322|dbj|BAB49929.1| flagellar basal body distal rod protein; FlgG [Mesorhizobium loti MAFF303099] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 14/181 (7%), Positives = 38/181 (20%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 A N I NI N + Y R + V Sbjct: 3 ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + L + ++ + + ++ + Sbjct: 63 PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIE------GADGGTLYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + + V N + + +I + + ++ + Sbjct: 117 AGAFNTNATGQLVTVDGANVIPAITVPTDAVEVIVNKTGQVFARIDGQTNLQTLGQLQIV 176 Query: 164 R 164 Sbjct: 177 N 177 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 49/174 (28%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + E + + I+ D + N + + Sbjct: 80 VHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYTRAGAFNTNATGQLVTVDGANVIPA 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 V+ + + D + +N + E S Sbjct: 140 ITVPTDAVEVIVNKTGQVFARIDGQTNLQTLGQLQIVNFANEAGLAPLGDNLFQETTASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + F I + Y V+ +E++ LI +++Y +++K+I D M Sbjct: 200 PANAGVPGDPGFATIQQGYLEASNVDPVKEITELISAQRAYEMNSKVIQAADDM 253 >gi|330447905|ref|ZP_08311553.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492096|dbj|GAA06050.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 261 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 45/180 (25%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V S+ + + F D + + + Sbjct: 77 TQKVFTQGNSQNTQQQLDLAVMGSGFFQIENSDGQVMYSRNGQFHVNSEGLMVNGQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ D + +A L N + E Sbjct: 137 QPQIQIPEEANSISIGVDGIVTATLAGDPEPQELGQITLAKFINPAGLEAVGGNL--YKE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TQASGQAQEIIAGTDGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 10/147 (6%), Positives = 29/147 (19%), Gaps = 27/147 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + F ++ Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGQVMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI 128 + + E N L + Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQ 141 >gi|283834453|ref|ZP_06354194.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291070000|gb|EFE08109.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 261 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 48/176 (27%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + + + VN + Sbjct: 80 TFTEGNVETTDNTMNVAIMGQGFWQVQKANGDIAYTRDGNLQVNADGVLTNAQGLPLQPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + ++ + + +N A +LE S Sbjct: 140 IDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + + + V++ E+ +I V+++Y ++ K++ D MLQ Sbjct: 200 QPTEGIPGEDGLGTLQDGALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQ 255 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/183 (9%), Positives = 46/183 (25%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + + + + Q F ++ + Sbjct: 61 IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNTMNVAIMGQGFWQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTNAQGLPLQPEIDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLT 174 Query: 162 NLR 164 + Sbjct: 175 LVN 177 >gi|84388093|ref|ZP_00990989.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] gi|84377160|gb|EAP94030.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ ++ +++ +V ++ + + F + D Sbjct: 50 NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + T+ + ++ + + ++ N Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNV 169 Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L +N +L S + +I +S T VN+ Sbjct: 170 VVGQITITDFVNPGGLEPVGQNL--YLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL +I+ ++ Y +++K+I DKM+ Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 48/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA + + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + I E+ V N + ++ + + + Sbjct: 121 TLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITITDFV 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTE 229 >gi|238916190|ref|YP_002929707.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871550|gb|ACR71260.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 277 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/273 (8%), Positives = 74/273 (27%), Gaps = 4/273 (1%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + + D I +++ + + + + + + Sbjct: 7 TAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSLLYQNLQAKTTSANGDDKPVGAQ 66 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 + + + S+ + + + + Sbjct: 67 VGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDTVYTRNGHFTWATAT 126 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIF 388 +S + + + + + N+ + +L+ ++ I Sbjct: 127 EGVMLSTSEGYPVLSADGAEIVLGQDANGEDYKTNLITIDTDGNLLYPDESNNPAPIGIK 186 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF-NHISESYSNTVGVNLQEE 447 + + L + + +G E S +V + + +SY V + E Sbjct: 187 IGLYQFSNPAGLDKLGSSYLG--ETEASGVPLNEDYDEVGKKSSLRQSYLEASNVQVATE 244 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI +++Y + +K I +D M++ + Sbjct: 245 MVNLITAQRAYELCSKAITTSDTMMEQANNLKR 277 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 20/112 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + + +I N+ N + Y + T Sbjct: 1 MMRSLWTAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSLLYQNLQAKTTSANGDD 60 Query: 47 -PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94 P V + L+A S F A+++ + D Sbjct: 61 KPVGAQVGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDT 112 >gi|253702432|ref|YP_003023621.1| flagellar basal body rod protein FlgG [Geobacter sp. M21] gi|251777282|gb|ACT19863.1| flagellar basal-body rod protein FlgG [Geobacter sp. M21] Length = 262 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 25/252 (9%), Positives = 64/252 (25%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + + + + A Sbjct: 11 GMQAQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A + + + ++ D + + + Q R Sbjct: 71 GVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGALKRDGQGRVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + + G ++ + + + A Sbjct: 131 SDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIGKN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +L + S + Q I + + V++ EE+ +I +++Y I++K I + Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMIVGQRAYEINSKAIQAS 250 Query: 469 DKMLQTLLEGVK 480 D+MLQ + Sbjct: 251 DEMLQQAAGLKR 262 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 29/240 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + + N+ NA + + T Sbjct: 1 MIRALWTAASGMQAQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V K + A + + F +++ ++ Sbjct: 61 TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQ------SDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 L+ + + V+ NA V + + Q + A L+ Sbjct: 115 TRAGALKRDGQGRVVTSDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 +++ + + +S Q + + + + + ++ Sbjct: 175 LASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234 >gi|119384847|ref|YP_915903.1| flagellar basal body rod protein FlgG [Paracoccus denitrificans PD1222] gi|119374614|gb|ABL70207.1| flagellar basal-body rod protein FlgG [Paracoccus denitrificans PD1222] Length = 261 Score = 67.7 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 62/221 (28%), Gaps = 8/221 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + L + + QL R + + + I Sbjct: 41 ADLQYQQATRPGTLTATNGAMVPAGVQLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGN 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + T + + + + G + ++ + ++ Sbjct: 101 GYLEVTLPSGISAYTRDGSLKRSAEGQVVTSEGYPLVPDITIPEDARSIAINADGQVFAY 160 Query: 383 NK------NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 N +A L N +LE S + + Q I + Sbjct: 161 FDDRVEPENLGQITLANFVNGKGLEAVGSNM--FLETPASGAPQVAAPGQEGLGTIRAGF 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V+ E++ LIK ++ Y +++K+I D+ML T ++ Sbjct: 219 LEESSVDPVREIAELIKAQRGYELNSKVITAADQMLGTTVQ 259 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 33/181 (18%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + + I N+ N Y R Sbjct: 3 ALQIAASGMSAQQMRVDVISNNLANMSTTGYNARRAEFADLQYQQATRPGTLTATNGAMV 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + + + + S Sbjct: 63 PAGVQLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGNGYLEV------TLPSGISAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L+ S E L + + N + + E +I+ Sbjct: 117 DGSLKRSAEGQVVTSEGYPLVPDITIPEDARSIAINADGQVFAYFDDRVEPENLGQITLA 176 Query: 164 R 164 Sbjct: 177 N 177 >gi|262364764|gb|ACY61321.1| flagellar hook protein [Yersinia pestis D182038] Length = 288 Score = 67.4 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/271 (11%), Positives = 67/271 (24%), Gaps = 30/271 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A N ++Q +I NI N+ K + T + P V V Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 D + F ++E + R ++ Y N Sbjct: 62 K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L D A + + +L+I+N ++ Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + + + + + + + + Y TT + Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTPPAGSVAS-EWAVH 216 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271 ++ + + P+ + + G Sbjct: 217 HTVDGGTATPPLTLQFTDTGALIPGIPAAGS 247 >gi|88799023|ref|ZP_01114604.1| Flagellar basal body rod protein [Reinekea sp. MED297] gi|88778250|gb|EAR09444.1| Flagellar basal body rod protein [Reinekea sp. MED297] Length = 261 Score = 67.4 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 50/180 (27%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + + + F + D + + + + + + Sbjct: 77 TQKQFVQGDLNMTEQPLDMAINGRGFFQVLMPDGNIAYTRDGTFHLDAEGNVVTANGYFL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + + D+ + L N +LE Sbjct: 137 EPNIQVPEQTKTITVGTDGIVTAVSAGDNDPVEIGNIDIVDFVNPAGLQAIGNNL--FLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + S F I + V + EE+ +I +++Y +++K + D+ML Sbjct: 195 TAASGAPAEGVPSLDGFGSIIQGALENSNVTIVEEMVDMISTQRAYEMNSKAVSTADQML 254 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 49/242 (20%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++I N+ NA Y + + V Sbjct: 1 MHKALWVGKTGLEAQDIALSTISNNLANAATTGYKKERAVFEDLIYQVQRQPGAQSSQNT 60 Query: 52 --------VVTQRSENK--NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R+ L+ + + F + N Sbjct: 61 QLPSGLQLGTGVRTVGTQKQFVQGDLNMTEQPLDMAINGRGFFQVL------MPDGNIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 E + L V + + + + V D + ++ Sbjct: 115 TRDGTFHLDAEGNVVTANGYFLEPNIQVPEQTKTITVGTDGIVTAVSAGDNDPVEIGNID 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 I + + N+ AS A + + + ++ Sbjct: 175 IVDFVNPAGLQAIGNNLFLETAASGAPAEGVPSLDGFGSIIQGALENSNVTIVEEMVDMI 234 Query: 220 YT 221 T Sbjct: 235 ST 236 >gi|315185552|gb|EFU19321.1| flagellar basal-body rod protein FlgG [Spirochaeta thermophila DSM 6578] Length = 264 Score = 67.4 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 3/137 (2%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEY 403 SN L + + F+ + +++ + + + LL Sbjct: 130 TSNGYRLIPEIVLPEGFIADTLSVSEDGRVTVKVPGQDDPVEVGQIQIYRFVNPSGLLAV 189 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N + N S + + V++ E+ +I +++Y +++K Sbjct: 190 GDNL--YKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEMIVAQRAYELNSK 247 Query: 464 LIMFTDKMLQTLLEGVK 480 + +D ML T + + Sbjct: 248 AVQTSDSMLGTAVNLKR 264 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 8/156 (5%), Positives = 29/156 (18%), Gaps = 27/156 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + ++ N+ N + + + Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 47 -----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V + +K L + + F + + Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVL------LYDGTYAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + L ++ + Sbjct: 115 TRDGSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADT 150 >gi|257457574|ref|ZP_05622741.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444960|gb|EEV20036.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 264 Score = 67.4 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 V L N + + S F + V+ E+ +I Sbjct: 180 FQNPVGLSAQGSNL--FRQTPASGQAIAGRPGFNGFGKTEHKFLEMSNVSTVSEMVNMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y ++K I +D ML T + + Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVGLKR 264 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 8/134 (5%), Positives = 28/134 (20%), Gaps = 15/134 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54 ++ A N+ ++ N+ N + + ++ + T T Sbjct: 1 MVRSLWTAATGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTIRAAGTPATEDT 60 Query: 55 QRSENKN------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107 + + ++ Q + E + Sbjct: 61 ITPVGVEMGHGAKLAATQRNFEQGSLQQTGVSTDVAIAGEGFFRVLQYDGTYAYTRDGSF 120 Query: 108 RDSLESYSKNLSED 121 + + + Sbjct: 121 KIDADRQLVTSNGL 134 >gi|225181584|ref|ZP_03735025.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167692|gb|EEG76502.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 259 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 30/163 (18%), Gaps = 28/163 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 M++ A Q+ NI N + Y ++ T+ + Sbjct: 1 MTI-RGLWNAAGGMRAQQQKIDVTAHNIANVNTTGYKKKTTLFSDLVYQSIERRGNAVEP 59 Query: 48 --------ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + ++ + + + + Sbjct: 60 AAAGEHPKTVGVGSKVAAIRSDLRPGTYLQTDRDLDMAIVGDGYFQI------TLPGGGM 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 E N + + + V A Sbjct: 114 AYTRDGSFSRDSEGNIVNSQGYRVVFPQLPEGQYEVNVAPEGA 156 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 4/105 (3%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 N+A + Y D +A + L + N + S + L + Sbjct: 150 NVAPEGAVSAVYEDGTVVPLGMLQLAYFDNPHGLEQLGDNLL--QATPASGAALLAFPGE 207 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +S+ Y + V+L E++ LI ++S+ ++++ + ++M Sbjct: 208 GSR--VSQGYLESSNVDLAAEMTQLIINQRSFELNSRALRTAEEM 250 >gi|134095095|ref|YP_001100170.1| basal-body rod protein [Herminiimonas arsenicoxydans] Length = 242 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + D + S Q ++ F + ++ + + Sbjct: 89 MPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAITIPENATSITISRDGIVSVTVSGTTA 148 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 +A L+ N ++E S + + + + ++Y T V Sbjct: 149 ATEIGALQLATFINPAGLMSRGENL--YVETTASGTANTNTPGSNGAGLLKQNYVETSNV 206 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 N+ EEL +I+ +++Y I++K I +D+MLQ L + Sbjct: 207 NVVEELVSMIQTQRAYEINSKAITTSDQMLQRLTQI 242 Score = 44.3 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 22/244 (9%), Positives = 49/244 (20%), Gaps = 34/244 (13%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI------------------------SPENVTVVTQR 56 I N+ N + R + V V Sbjct: 1 MDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + L S+A F + + + + Sbjct: 61 RIH---TQGNLQLTSNAKNLAIEGDGFFQVL------MPDGTTAYTRDGSFQTDNQGQMV 111 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S + I E + V + E+ L F++ +++ Sbjct: 112 TSSGFP-IQPAITIPENATSITISRDGIVSVTVSGTTAATEIGALQLATFINPAGLMSRG 170 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 + + + + + T N + +V +E + I Sbjct: 171 ENLYVETTASGTANTNTPGSNGAGLLKQNYVETSNVNVVEELVSMIQTQRAYEINSKAIT 230 Query: 237 FEKM 240 Sbjct: 231 TSDQ 234 >gi|94495409|ref|ZP_01301989.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424797|gb|EAT09818.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 2/185 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L +++ + A + + D + + ++ + Sbjct: 74 ALQGTSKINSQGTLTQTSNALDMAIEGSGYFQVQQPDGSIAYSRAGNFSVTAEGTIVTGD 133 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + +V +S +A L N + Sbjct: 134 GLPLIPQITVPQGATSVSIGNDGTVSATLQGESEPSQLGQIELASFMNPSGLQSIGGNLL 193 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +E S + + + I Y T VN+ EEL +I+ +++Y +++K+I T Sbjct: 194 --VETAASGTPQVGVAGLEGRGVIRSGYLETSNVNIVEELVDMIETQRAYEVNSKMIKAT 251 Query: 469 DKMLQ 473 D+MLQ Sbjct: 252 DEMLQ 256 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 41/185 (22%), Gaps = 34/185 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS A + A+ + + + I N+ N + + + Sbjct: 1 MS-NAALHVARTGLDAQNTKMRVIANNLANVNTTGFKKDRADFETLAYQQIVQAGANSDA 59 Query: 46 ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 V + N L S+A+ + +++ Sbjct: 60 ENKFATGLNLGSGVALQGTSKINSQ---GTLTQTSNALDMAIEGSGYFQVQQ------PD 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + E L + + ++ +++ Sbjct: 111 GSIAYSRAGNFSVTAEGTIVTGDGLPLIPQITVPQGATSVSIGNDGTVSATLQGESEPSQ 170 Query: 157 ELEIS 161 +I Sbjct: 171 LGQIE 175 >gi|126734107|ref|ZP_01749854.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] gi|126716973|gb|EBA13837.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] Length = 261 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +AG L N +LE S + + + + Y V+ E++ Sbjct: 174 SLAGFTNAKGLEAIGSNL--FLETPASGPSVVGTPGEDGLGVLRQGYLEDSSVDPVREVT 231 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI+ ++ Y +++K+I D+ML +++ Sbjct: 232 DLIEAQRGYELNSKVITAADQMLSAMVQL 260 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 28/140 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + I N+ N + Y R Sbjct: 3 ALKIAAAGMTAQQMRVEVISNNLANMNTTGYNPRRAEFADLHYQQLVRPGTINASDGTVL 62 Query: 47 PENVTVV-TQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + R + + + L A + + + S Sbjct: 63 PTGIQLGLGVRPSAISVMLSQGALGATGGDLDLAIEGDGYLEV------TLPSGASAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL 123 L+ + + + Sbjct: 117 DGALKLTGDGLIVTSDGYPV 136 >gi|289208116|ref|YP_003460182.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] gi|288943747|gb|ADC71446.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 2/182 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 ++ ++ + + F + + D + S + + + + + Sbjct: 76 STEKMFTQGNLQQTDNSLDVAIEGRGFFQVLMPNGDIGYTRDGSFQLNADGEVVMSNGYP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G ++ + +A L N + Sbjct: 136 LQPGLFVPPDTQSLAIGKDGTVTAQIPGQAEPVELGNIQLADFVNPAGLQAIGENL--FQ 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + T VN+ EEL +I+ +++Y +++K I D+ Sbjct: 194 ETAASGVAQQAQPGLNGTGTLVQGSLETSNVNIAEELVNMIETQRAYEVNSKAISAADQS 253 Query: 472 LQ 473 LQ Sbjct: 254 LQ 255 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 8/143 (5%), Positives = 32/143 (22%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + +++ N+ N + + + + Sbjct: 1 MNQALWIAKTGLDAQHTRMSTVSNNLANVNTTGFKKDRAVFEDLIYQTVRQPGAQATQDQ 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L +++ + F + + Sbjct: 61 QLPSGLQIGTGVRAVSTEKMFTQGNLQQTDNSLDVAIEGRGFFQVL------MPNGDIGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + + + + L Sbjct: 115 TRDGSFQLNADGEVVMSNGYPLQ 137 >gi|92114096|ref|YP_574024.1| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] gi|91797186|gb|ABE59325.1| Flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] Length = 260 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 2/169 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F A + D + + S I N Q + + D V + +V Sbjct: 94 DLAINGQGFFAVQMPDGTSAYTRDGSFQIDENGQMVTAGGYPLDPPIVIPENALSVSISQ 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + D+ + ++ L N + E + S + + Sbjct: 154 DGVVSVTQPGDTAAQEVGQLTLSKFINPAGLQSMGENL--YQETDASGPRNDLIPGMEGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + Y T VN+ EE+ +I+ +++Y I++K + +D+ML L + Sbjct: 212 GRLYQGYVETSNVNVVEEMVSMIETQRAYEINSKAVETSDQMLSRLTQL 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 33/171 (19%), Gaps = 21/171 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A+ + + I N+ N + R + Sbjct: 1 MIRSLWTAKTGLESQQVKLDVISNNLSNVSTNGFKRSRPVFEDLLYQNVRQPGAQASAVD 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + V T + + LH + + S Sbjct: 61 TLPSGLQVGTGVR---PVATERLHTQGGLQNTDNSKDLAINGQGFFAVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + L ++ + + + D + Sbjct: 118 GSFQIDENGQMVTAGGYPLDPPIVIPENALSVSISQDGVVSVTQPGDTAAQ 168 >gi|115523179|ref|YP_780090.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517126|gb|ABJ05110.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + +Y R T Sbjct: 3 SLAIAATGMSAQQLNVEVIANNIANINTTSYKRSRAEFTDLFYQIDRMQGVPNRVGEGAV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L +A + + + ++ Sbjct: 63 PEGAKLGLGVRSAAVRKLH---LQGALAQTGNAYDLAVNGRGWFQVV------GPNGDTL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + ++ + T++ N S + K+ + + ++ Sbjct: 114 YTRAGAFNTNADAQLVTADGYKVDPTILIPEGTAQVTVNESGQVYAKLDTEVTPRLLGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TLAN 177 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 2/173 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + A + + + D + + + Q + + D + + Sbjct: 87 AQTGNAYDLAVNGRGWFQVVGPNGDTLYTRAGAFNTNADAQLVTADGYKVDPTILIPEGT 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 V + + +A L N + E S + + Sbjct: 147 AQVTVNESGQVYAKLDTEVTPRLLGQLTLANFANEAGLDPLGSNL--YKETIASGTPVVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + F I + Y + V+ +E++ LI ++SY +++K+I D+M T+ Sbjct: 205 FPGDIGFGKIHQHYLESSNVDPVKEITELISAQRSYEMNSKVIQAADEMASTI 257 >gi|330953722|gb|EGH53982.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 162 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 2/160 (1%) Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 I + Q S L+ + + N+ +L Y Sbjct: 4 TTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATY 63 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + ++ + L + W E S +I+ Sbjct: 64 TNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALE 121 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EL LIK + +Y + K I ++QT ++ Sbjct: 122 ESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 161 >gi|197120123|ref|YP_002140550.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] gi|197089483|gb|ACH40754.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 25/252 (9%), Positives = 64/252 (25%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + + + + + A Sbjct: 11 GMQAQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A + + + ++ D + + Q R Sbjct: 71 GVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGAFKRDGQGRVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + + G ++ + + + A Sbjct: 131 SDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIGKN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +L + S + Q I + + V++ EE+ +I +++Y I++K I + Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMIVGQRAYEINSKAIQAS 250 Query: 469 DKMLQTLLEGVK 480 D+MLQ + Sbjct: 251 DEMLQQAAGLKR 262 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/240 (7%), Positives = 56/240 (23%), Gaps = 29/240 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + + N+ NA + + T Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V K + A + + F +++ ++ Sbjct: 61 TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQ------SDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + V+ NA V + + Q + A L+ Sbjct: 115 TRAGAFKRDGQGRVVTSDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 +++ + + +S Q + + + + + ++ Sbjct: 175 LASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234 >gi|254508453|ref|ZP_05120573.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] gi|219548663|gb|EED25668.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ +V ++ + + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399 ++ S + + ++ N + Sbjct: 125 EGAIVTSGSGYNLQPEIVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQITTVDFINPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N +L S + F I +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPVGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I DKM+ Sbjct: 243 MNSKVISAVDKMM 255 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA Y + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + V+ + + + + Sbjct: 121 TVNDEGAIVTSGSGYNLQPEIVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQITTVDFI 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229 >gi|126738578|ref|ZP_01754283.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] gi|126720377|gb|EBA17083.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] Length = 261 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + +AG L N ++ S + + + + + Y V Sbjct: 167 GQLLGQFNLAGFTNPKGLEALGSNL--FIATEASGAANTSTAGEDGLGSLRQGYLEGSSV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 225 DSVREVTELIEAQRGYEMNAKVISAVDQMM 254 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 33/151 (21%), Gaps = 28/151 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQVSRAGTINASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + ++ L +S + + + + S Sbjct: 63 PTGVQVGLGVRPAAISVHLNQGALKQTNSDLDVAIEGKGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 L+ S E + + + + Sbjct: 117 DGALKRSAEGLIVTSDGYPVSPEITIPNDAL 147 >gi|300817268|ref|ZP_07097486.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300530244|gb|EFK51306.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] Length = 261 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 48/178 (26%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + + + VN S Sbjct: 80 TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTISQGLPLQPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + + + +N A +LE S Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + ++ V++ E+ +I V+++Y ++ K++ D MLQ + Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 61/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWFSKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTISQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|260866415|ref|YP_003232817.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|257762771|dbj|BAI34266.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|323178492|gb|EFZ64070.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] Length = 261 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 48/178 (26%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + + + VN S Sbjct: 80 TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPLQPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + + + +N A +LE S Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + ++ V++ E+ +I V+++Y ++ K++ D MLQ + Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTLEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|299131804|ref|ZP_07024999.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] gi|298591941|gb|EFI52141.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] Length = 604 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 40/410 (9%), Positives = 103/410 (25%), Gaps = 20/410 (4%) Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + ++ SA + T I+ + + + N + I Sbjct: 215 NGSKNGSVQNSKLTTATQITSATLLSGATNTDSIATDFTAGNTITVNGTTTITFTASGGL 274 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + + + ++ A+ S ++ T + + + +++ Sbjct: 275 DDATHIPVDGTIADLLAKIDAANGNTTNPSSVSGGVITLNTGLANNLTVTSSNAAAFAAL 334 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 + + T V SD + + Sbjct: 335 GFST-------ATVTASRTGGGTAGTGTVIGSDSQNFIDESVSGGATTAYDVSGAPVSLQ 387 Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + S G + +QN G + P Sbjct: 388 LRWAKTDSASLGAGHSDVWNLFYQTNPNATGTDVAWQNVGVNFTFGANGQMNPAVPSVTL 447 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 + G L + + + N + +++ Sbjct: 448 TNA------TIGGIALGDVTMNFGATGLTQFADANGNVQVNQIQNDGFPAGQLQTVSISN 501 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 ++ +Y + N + +A N L + + Sbjct: 502 NGRVVGNYSNGRNIDLAAITLATFNGPNFLKRV-------DGGAFEVTDESGQALFGKGG 554 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I S ++ +E + LI +Q+Y+ + K+I +++M+Q LL ++ Sbjct: 555 TIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 604 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/454 (9%), Positives = 104/454 (22%), Gaps = 22/454 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53 M + + + S +I NI N+ + R DT + + V Sbjct: 1 MGIFGALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGANAQLAGSV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLRD 109 + S N + A S A F A+++ S D+ Sbjct: 61 SSSSRETNTVQGDVQAASVATYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID V + ++ + ++ S Sbjct: 121 DKNGYLVNGAGYYLEGIPIDPTTGNVTG--SVPTVLKFGNDFLPAQPTTTVTYRANLASY 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + K + + L+ D + + + + V S TT + Sbjct: 179 P------LTTKHDTSVPGSELLNVGDFTANPLIVGTPAQPYINGSKNGSVQNSKLTTATQ 232 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + N+ ++ ++ V ++ G A D + + Sbjct: 233 ITSATLLSGATNTDSIATDFTAGNTITVNGTTTITFTASGGLDDATHIPVDGTIADLLAK 292 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYRS 346 +D S + + + + T+ Sbjct: 293 IDAANGNTTNPSSVSGGVITLNTGLANNLTVTSSNAAAFAALGFSTATVTASRTGGGTAG 352 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + + Y G + + + Sbjct: 353 TGTVIGSDSQNFIDESVSGGATTAYDVSGAPVSLQLRWAKTDSASLGAGHSDVWNLFYQT 412 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + + + + + ++ + + Sbjct: 413 NPNATGTDVAWQNVGVNFTFGANGQMNPAVPSVT 446 >gi|323165588|gb|EFZ51375.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G] Length = 125 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 2/104 (1%) Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 + + + + L N E S + + + Sbjct: 24 VTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGVPNESTPGLNGAGLLYQ 81 Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Y T VN+ EEL +I+V+++Y I++K + TD+MLQ L + Sbjct: 82 GYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 125 >gi|197335127|ref|YP_002156698.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] gi|197316617|gb|ACH66064.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] Length = 262 Score = 67.4 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 3/185 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ +V ++ + F + D + + T+ + Sbjct: 72 SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGAIVTT 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406 + R + + ++ + L +N Sbjct: 132 GAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFINPGGLEPVGQN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +L S F + +S VN+ EEL +I+ ++ Y +++K+I Sbjct: 192 L--YLPTGASGDPQEGTPGLEGFGAVRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249 Query: 467 FTDKM 471 DKM Sbjct: 250 AVDKM 254 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 13/203 (6%), Positives = 43/203 (21%), Gaps = 19/203 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 + ++ + A+I N+ NA + + + +NV +S Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 62 -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + + Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + ++ + + + + Sbjct: 121 TLNDEGAIVTTGAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFI 180 Query: 164 RRFLSELTVVNDAIKFKTASKHD 186 E N + + Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQ 203 >gi|283784086|ref|YP_003363951.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947540|emb|CBG87093.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 261 Score = 67.4 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 46/176 (26%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + + + +N S Sbjct: 80 TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQINADGVLTNSQGLPLQPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + + + +N A +LE S Sbjct: 140 IDVPAGATSVAFGEDGTVTAILPGDSDPTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + + + V++ E+ +I V+++Y ++ K++ D MLQ Sbjct: 200 QPTEGIPGEDGLGTLQGNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQ 255 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 47/183 (25%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQINADGVLTNSQGLPLQPEIDVPAGATSVAFGEDGTVTAILPGDSDPTELGQLT 174 Query: 162 NLR 164 + Sbjct: 175 LVN 177 >gi|52841453|ref|YP_095252.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628564|gb|AAU27305.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 261 Score = 67.4 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 2/189 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L ++ + A + F + D + S Q ++ Sbjct: 73 HLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQSYTRDGSFKTDSTGQIVNSN 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + ++ + L +N Sbjct: 133 GYPLQPNITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQLTDFINPAGLQPIGQNLY 192 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 E S + + + VN+ EEL +I+ ++SY I+ K I Sbjct: 193 T--ETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQAQRSYEITAKSIQTV 250 Query: 469 DKMLQTLLE 477 D MLQ L + Sbjct: 251 DSMLQYLTQ 259 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 +++ + A+I N+ N + + + + Sbjct: 4 ALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIP 63 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V +V L +A+ + F + Sbjct: 64 TGINMGTGVHLVATEKI---FSQGSLQNTQNALDVAIEGRGFFTVL------MPDGTQSY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + N + L + + Sbjct: 115 TRDGSFKTDSTGQIVNSNGYPLQPNITIPPQT 146 >gi|59712479|ref|YP_205255.1| flagellar basal body rod protein FlgG [Vibrio fischeri ES114] gi|59480580|gb|AAW86367.1| flagellar distal rod protein FlgG [Vibrio fischeri ES114] Length = 262 Score = 67.4 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 3/185 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 +++ +V ++ + F + D + + T+ + Sbjct: 72 SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGAIVTT 131 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406 + R + + ++ + L +N Sbjct: 132 GAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFINPGGLEPVGQN 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 +L S F + +S VN+ EEL +I+ ++ Y +++K+I Sbjct: 192 L--YLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249 Query: 467 FTDKM 471 DKM Sbjct: 250 AVDKM 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/229 (7%), Positives = 51/229 (22%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 + ++ + A+I N+ NA + + + +NV +S Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 62 -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + + Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + ++ + + + + Sbjct: 121 TLNDEGAIVTTGAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFI 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211 E N + + LD + Q + E ++ Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTE 229 >gi|331666548|ref|ZP_08367422.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331065772|gb|EGI37656.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] Length = 261 Score = 67.4 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 48/178 (26%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + ++ + + + VN S Sbjct: 80 TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTISQGLPLQPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G + + + +N A +LE S Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + ++ V++ E+ +I V+++Y ++ K++ D MLQ + Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 61/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTISQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|157147100|ref|YP_001454419.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157084305|gb|ABV13983.1| hypothetical protein CKO_02877 [Citrobacter koseri ATCC BAA-895] Length = 261 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 58/212 (27%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G++ + ++ + + + F D D Sbjct: 52 PGGQLDQNNIAPTGIQYGTGVKIVGTQKEFTVGSIQNTGQTFDVAITGQGFFQVETADGD 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + + + + +++ ++ Sbjct: 112 IAYTRAGNFQKTPDGVLTNAQGLPLVPQIELPENVKDLQIGKDGTITATVAGETDPVELG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N + E S + + + + V + EE Sbjct: 172 QLTLVNFVNPAGLEAIGGNL--YRETAASGEAVEGVPGEDALGQLEQGSLEGSNVQVVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +I V+++Y ++ K++ D ML+ + + + Sbjct: 230 MVDMITVQRAYEMNAKMVSAADDMLKFVTQSM 261 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 36/186 (19%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + ++ + +I N+ N + + R M Sbjct: 1 MNPALWISKTGLAAQDAKMTAISNNLANVNTTGFKRDRAMFADLFYQNQRTPGGQLDQNN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + + Q F ++ + Sbjct: 61 IAPTGIQYGTGVKIVGTQK---EFTVGSIQNTGQTFDVAITGQGFFQVE------TADGD 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + N L + + + D Sbjct: 112 IAYTRAGNFQKTPDGVLTNAQGLPLVPQIELPENVKDLQIGKDGTITATVAGETDPVELG 171 Query: 159 EISNLR 164 +++ + Sbjct: 172 QLTLVN 177 >gi|320537132|ref|ZP_08037104.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] gi|320146005|gb|EFW37649.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] Length = 264 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L N + + S F + V+ E+ +I Sbjct: 180 FQNNAGLAAEGSNL--FKQTPASGQAIPGRPGFNGFGKTEHKFLEMSNVSTVSEMVNMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y ++K I +D ML T + + Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVGLKR 264 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 10/145 (6%), Positives = 29/145 (20%), Gaps = 15/145 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 ++ A + N+ ++ N+ N + + ++ Sbjct: 1 MIRSLWTAASGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTVKSAGTPATEDT 60 Query: 52 ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107 V Q + A+ L E + Sbjct: 61 ITPVGIQMGHGSKLAATQRIFEQGALQHTGLTSDVAVAGEGFFRVLQYDGTYAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAE 132 + + + + +I Sbjct: 121 KIDADRQLVTSNGLRVLPEIIFPEN 145 >gi|197120190|ref|YP_002140617.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] gi|197089550|gb|ACH40821.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] Length = 294 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 4/138 (2%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 ++L G + + DP A +L + Sbjct: 161 DNTGLITYLATDGITQNYYSTSGVAGVATTPAAAAAAQKVAVVTAPDPTALKKVGGSLYQ 220 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + + K+ V I + V+L E +I +++Y+ ++ Sbjct: 221 A----TTTSGVSAAGFSLAANKANGVSEQILSNTLEQSTVDLANEFVKMITTQRAYSANS 276 Query: 463 KLIMFTDKMLQTLLEGVK 480 K I +D+M Q +L ++ Sbjct: 277 KTITTSDQMTQEVLSLIR 294 Score = 63.5 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 10/172 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52 MS+ + + + I NI N + Y T+ + Sbjct: 1 MSVTSALYTGVSGLLQNGEAMNVIGNNISNVNTVGYKGARTLFSDMLSQNVGNNSQIGKG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110 V ++ + SF AL + +++ Sbjct: 61 VQMQAVQNVFSQGSTQTSENVTDLAIQGNSFFALKPSTAAAPVAAQSSAFLSRAGAFHTD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 Y N + T + + + + + + D I ++ Sbjct: 121 SNLYLVNPDGYQVLDTAGNPIKFLNSGAAPATDFGKVLSIDNTGLITYLATD 172 >gi|91224197|ref|ZP_01259460.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269965646|ref|ZP_06179759.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] gi|91191108|gb|EAS77374.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269829714|gb|EEZ83950.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] Length = 261 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 45/180 (25%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + ++ Sbjct: 77 TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHRNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D + +A L N + E Sbjct: 137 EPQIQIPDNAVSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAMGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S D + I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TEASGPADELIAGADGAGIIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 32/156 (20%), Gaps = 33/156 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + + + Q F ++ Sbjct: 61 ELPSGIQLGSGVRVVGTQKV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + E N L + V Sbjct: 112 IMYTRNGQFHRNSEGLMVNSQGLPLEPQIQIPDNAV 147 >gi|207092742|ref|ZP_03240529.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 646 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + ++ V + ++ + +T A +V + I+ + Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ D + D + S+ GI+ + + ++ Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230 Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 D +L+ + + V+ +S + D + + N + KI S Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 + + V + E + K + + Q + Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 + + + + S + I + + + + A I + +L Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400 Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + ++S + + + + ++ N I E+ Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNAIKEN 434 >gi|54294165|ref|YP_126580.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Lens] gi|54297184|ref|YP_123553.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Paris] gi|148358808|ref|YP_001250015.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|296106853|ref|YP_003618553.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|53750969|emb|CAH12380.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Paris] gi|53753997|emb|CAH15468.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Lens] gi|148280581|gb|ABQ54669.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|295648754|gb|ADG24601.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|307609979|emb|CBW99508.1| flagellar biosynthesis protein FlgG [Legionella pneumophila 130b] Length = 261 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 2/189 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L ++ + A + F + D + S Q ++ Sbjct: 73 HLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQAYTRDGSFKTDSTGQIVNSN 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + ++ + L +N Sbjct: 133 GYPLQPNITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQLTDFINPAGLQPIGQNLY 192 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 E S + + + VN+ EEL +I+ ++SY I+ K I Sbjct: 193 T--ETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQAQRSYEITAKSIQTV 250 Query: 469 DKMLQTLLE 477 D MLQ L + Sbjct: 251 DSMLQYLTQ 259 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 +++ + A+I N+ N + + + + Sbjct: 4 ALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIP 63 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V +V L +A+ + F + Sbjct: 64 TGINMGTGVHLVATEKI---FSQGSLQNTQNALDVAIEGRGFFTVL------MPDGTQAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + N + L + + Sbjct: 115 TRDGSFKTDSTGQIVNSNGYPLQPNITIPPQT 146 >gi|170741836|ref|YP_001770491.1| flagellar basal body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196110|gb|ACA18057.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 262 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 57/178 (32%), Gaps = 2/178 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + + + S Q + ++ + + Sbjct: 87 AQTSNNLDLAINGRGYFQVTNPNGEVNYTRAGSFNKSSTGQLVTLEGYVVEPAILFPANT 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +V + + +A L + E S + Sbjct: 147 VDVVINQSGQVYAKVDGQATPQLLGQLSIANFANESGLEPLGNGL--YRETAASGAPVTG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F + + Y + V+ +E++ LI ++++ +++K+I D+M T+ +G++ Sbjct: 205 VAGDTGFGKVQQGYLESSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 40/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I N+ N + + T Sbjct: 3 ALAIAATGMNAQQLNLEVIANNVANLNTTGFKGARAEFTDLLYQAERQQGVPNQTGQEAV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ ++ L S+ + + + + Sbjct: 63 PEGALLGLGVRAAAIRNLHRQ---GPLAQTSNNLDLAINGRGYFQVTN------PNGEVN 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S L ++ ++ A V N S + K+ A ++ ++ Sbjct: 114 YTRAGSFNKSSTGQLVTLEGYVVEPAILFPANTVDVVINQSGQVYAKVDGQATPQLLGQL 173 Query: 161 SNLR 164 S Sbjct: 174 SIAN 177 >gi|213616339|ref|ZP_03372165.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 187 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 9/182 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D + F L + + + + N+ Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L +Q A A K + ++ A Sbjct: 116 LTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDA 175 Query: 183 SK 184 Sbjct: 176 DS 177 >gi|296282277|ref|ZP_06860275.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 262 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 10/215 (4%) Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--VPGL 317 + G+ + Q+ M + + + +A + + + Sbjct: 49 DARVAGQKSSGETAYATGLNLGTGVAVQSTSQIMTAGTLDTTNNAFDLALDGDGFFQIAM 108 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + + P G+ + + A Sbjct: 109 PGGRTGYTRAGNFTRSAEGMLVTQQGFAVQPEITVPEGASAIAIAPDGTVSATIN----- 163 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 +S +A L N + E S + +L + + I + Sbjct: 164 -GESEPTELGQIQIARFTNPSGLQAIGDNFLA--ETAASGAAELGIAGEGGRGQIRQGML 220 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 VN+ EEL +I+ +++Y IS+K++ D+ML Sbjct: 221 EGSNVNIVEELVAMIEAQRAYEISSKMVSAVDEML 255 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 27/142 (19%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------------- 49 + A+ + I N+ N + R Sbjct: 3 TSALQVARTGLEAQDARMRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQKSSGETA 62 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T V +S ++ M L ++A F + + Sbjct: 63 YATGLNLGTGVAVQSTSQIMTAGTLDTTNNAFDLALDGDGFFQIA------MPGGRTGYT 116 Query: 103 YISKLRDSLESYSKNLSEDILG 124 S E + Sbjct: 117 RAGNFTRSAEGMLVTQQGFAVQ 138 >gi|170680582|ref|YP_001742375.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|256020230|ref|ZP_05434095.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|260853468|ref|YP_003227359.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|293403357|ref|ZP_06647448.1| flgG [Escherichia coli FVEC1412] gi|293408369|ref|ZP_06652208.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298378968|ref|ZP_06988849.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300900357|ref|ZP_07118533.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300936128|ref|ZP_07151067.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|306813301|ref|ZP_07447494.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307313517|ref|ZP_07593138.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|331645420|ref|ZP_08346524.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332281392|ref|ZP_08393805.1| lateral flagellar rod protein [Shigella sp. D9] gi|59889782|emb|CAH19138.1| Lateral flagellar rod protein (FlgG-like) [Escherichia coli] gi|170518300|gb|ACB16478.1| lateral flagellar rod protein LfgG [Escherichia coli SMS-3-5] gi|257752117|dbj|BAI23619.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|284920046|emb|CBG33103.1| lateral flagellar rod protein (FlgG-like) [Escherichia coli 042] gi|291429210|gb|EFF02230.1| flgG [Escherichia coli FVEC1412] gi|291471547|gb|EFF14030.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298280081|gb|EFI21585.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300356125|gb|EFJ71995.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300458706|gb|EFK22199.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|305854064|gb|EFM54503.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306906685|gb|EFN37196.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|315059544|gb|ADT73871.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|323158101|gb|EFZ44200.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323171066|gb|EFZ56715.1| flagellar basal-body rod protein FlgG [Escherichia coli LT-68] gi|323191540|gb|EFZ76801.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379897|gb|ADX52165.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323975928|gb|EGB71022.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|327254556|gb|EGE66172.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|331045582|gb|EGI17708.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332103744|gb|EGJ07090.1| lateral flagellar rod protein [Shigella sp. D9] Length = 261 Score = 67.0 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 52/191 (27%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 F + + + + + ++ + + + VN Sbjct: 67 QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 126 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S G + + + +N A Sbjct: 127 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSA 186 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +LE S + + + ++ V++ E+ +I V+++Y ++ K+ Sbjct: 187 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 246 Query: 465 IMFTDKMLQTL 475 + D MLQ + Sbjct: 247 VSAADDMLQYI 257 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|330830301|ref|YP_004393253.1| flagellar basal body rod protein FlgG [Aeromonas veronii B565] gi|328805437|gb|AEB50636.1| Flagellar basal body rod protein FlgG [Aeromonas veronii B565] Length = 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 74/262 (28%), Gaps = 3/262 (1%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 M T + +I+ N ++ Q P G+ A Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ ++ ++ + + + + + + D + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395 T+ + + + + + D ++ ++ Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINISDFV 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N ++E S + I + T VN+ EEL LI+ + Sbjct: 181 NASGLQPMGENM--FVETQSSGAAAQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQAQ 238 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 + Y +++K++ D M+ L++ Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 11/161 (6%), Positives = 34/161 (21%), Gaps = 15/161 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + N+ NA + + + P + Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 56 R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + H+ + L + + ++ + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + E + I E +V Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQ 161 >gi|254698165|ref|ZP_05159993.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 246 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 49 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 108 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 109 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 168 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 169 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 226 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 227 NSKVIQAADEM 237 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/171 (5%), Positives = 35/171 (20%), Gaps = 34/171 (19%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI-------------------------SPENVTVVTQ 55 I NI N + + R T V Sbjct: 2 LEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 R + + + + ++ + + + Sbjct: 62 R---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETLYTRAGAFNKNADGQL 112 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 L + + + + + + + K++ ++ +++ Sbjct: 113 VTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFT 163 >gi|170021358|ref|YP_001726312.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|188494741|ref|ZP_03002011.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|307136860|ref|ZP_07496216.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|331640715|ref|ZP_08341862.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331671806|ref|ZP_08372602.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|169756286|gb|ACA78985.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|188489940|gb|EDU65043.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|315616825|gb|EFU97442.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|323181549|gb|EFZ66969.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|331040089|gb|EGI12297.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331070795|gb|EGI42154.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] Length = 261 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 52/191 (27%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 F + + + + + ++ + + + VN Sbjct: 67 QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 126 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S G + + + +N A Sbjct: 127 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTLVNFANPAGLSA 186 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 +LE S + + + ++ V++ E+ +I V+++Y ++ K+ Sbjct: 187 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 246 Query: 465 IMFTDKMLQTL 475 + D MLQ + Sbjct: 247 VSAADDMLQYI 257 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|325923276|ref|ZP_08184949.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] gi|325546203|gb|EGD17384.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] Length = 261 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G A Q+ + ++ + ++ A + F + D Sbjct: 52 PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + I + +N + G + ++ + + + Sbjct: 112 SAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N ++E S + VN EE Sbjct: 172 ALTLTDFINPSGLQSKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +I+ +++Y ++ K I TD ML L V Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T S R L + S Sbjct: 61 QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILG 124 + + + S L Sbjct: 118 GTFQINAQGEVVTNSGYPLQ 137 >gi|312882657|ref|ZP_07742394.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309369618|gb|EFP97133.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 T + +I+ N ++ Q P G+ ++ Sbjct: 5 LWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++ +++ +V ++ + + F + D + + T+ Sbjct: 65 GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399 ++ + ++ + ++ N + Sbjct: 125 EGIIVTSGAGYTLEPEIAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQITTVDFINPGG 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N +L S + F + +S T VN+ EEL +I+ ++ Y Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIEAQRVYE 242 Query: 460 ISNKLIMFTDKML 472 +++K+I DKM+ Sbjct: 243 MNSKVISAVDKMM 255 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + ++I N+ NA + + + P + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 56 R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107 + + + + + Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163 + E + I E+ + + V+ + + + + Sbjct: 121 TVNDEGIIVTSGAGYTLEPEIAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQITTVDFI 180 Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 E N + + + D + Q + E ++ Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTE 229 >gi|27381984|ref|NP_773513.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27355154|dbj|BAC52138.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 2/178 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + + + + S N Q + +L D Sbjct: 82 IQGALTQTGNPYDLAINGRGWFQVLGPNNEVQYTRAGSFNTNANSQLVTTDGYLLDPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + V + + +A L N + E S Sbjct: 142 IPQGTVEVTVNQTGQVFAKLDTEVNPRQIGQLNLANFANEAGLEPLGSNL--YRETTASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + + I++ Y V+ +E++ LI +++Y ++ K+I +D+M T+ Sbjct: 200 TPVVGLPGDAGYGKINQKYLEASNVDPVKEITELISAQRAYEMNAKVIQASDEMASTV 257 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 37/184 (20%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N ++ +Y R T Sbjct: 3 SLAIAATGMNAQQTNIEVIANNIANINSTSYKRARAEFTDLFYQMDRMQGVANVNGSSPI 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L + + + + N Sbjct: 63 PEGANLGLGVKSAAIRKLH---IQGALTQTGNPYDLAINGRGWFQVL------GPNNEVQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S +L + V N + + K+ + + ++ Sbjct: 114 YTRAGSFNTNANSQLVTTDGYLLDPAITIPQGTVEVTVNQTGQVFAKLDTEVNPRQIGQL 173 Query: 161 SNLR 164 + Sbjct: 174 NLAN 177 >gi|258622490|ref|ZP_05717512.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] gi|258625232|ref|ZP_05720144.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258582479|gb|EEW07316.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258585190|gb|EEW09917.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] Length = 261 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 77 TQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ D + +A L N + E Sbjct: 137 EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEAVGGNL--FRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + + Q I + V + EE+ +I +++Y ++ K++ TD ML Sbjct: 195 TDASGLAEELVAGQDGTGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSATDDML 254 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 11/151 (7%), Positives = 31/151 (20%), Gaps = 27/151 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + + + Q F ++ Sbjct: 61 ELPTGVQLGSGVRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIEN------SDGQIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 + + E N L + Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDN 145 >gi|260466619|ref|ZP_05812807.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] gi|259029625|gb|EEW30913.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] Length = 262 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 37/181 (20%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 A N I NI N + Y R + V Sbjct: 3 ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + L + ++ + + ++ + Sbjct: 63 PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIE------GADGGTLYSR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + + V N + + +I D + ++ Sbjct: 117 AGAFNTNATGQLVTVDGASVIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIA 176 Query: 164 R 164 Sbjct: 177 N 177 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + V + + + D + + Q + Sbjct: 76 AVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYSRAGAFNTNATGQLVTVDGAS 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V + +N +A L N + Sbjct: 136 VIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIANFANEAGLAPLGDNL--FQ 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S ++ + F I + Y V+ +E++ LI +++Y +++K+I D M Sbjct: 194 ETTASGPANVGVPGDPGFATIQQGYLEASNVDPVKEITELISAQRAYEMNSKVIQAADDM 253 >gi|330953727|gb|EGH53987.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7] Length = 148 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 16 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 75 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 76 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 133 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 134 ISTADQMLQNLTQ 146 >gi|154253003|ref|YP_001413827.1| flagellar basal body rod protein FlgG [Parvibaculum lavamentivorans DS-1] gi|154156953|gb|ABS64170.1| flagellar basal-body rod protein FlgG [Parvibaculum lavamentivorans DS-1] Length = 261 Score = 67.0 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 2/188 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + R++ + + + D+ + + I + Q + + Sbjct: 76 AVNRIMTQGNMNNTENKLDVAIQGRGYFRIELPSGDDAYTRAGTFDIGPDGQLITADGYT 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G ++ A + + + + L N Sbjct: 136 LAPGITIPPEATDIAISADGQVQVAIPGQTAPQIVGQMELVAFANEGGLDPLGGNLFA-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + + + T VN E++ LI +++Y ++ K+I +D+M Sbjct: 194 ETPASGAPTIGTPGNDGLGSVLQGFLETSNVNAVSEITSLITAQRAYEMNAKIITASDEM 253 Query: 472 LQTLLEGV 479 + Sbjct: 254 MSVTSNMK 261 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + A I NI N + R Sbjct: 3 SLSIAATGMMAQQLNVEVISNNIANMSTTGFKRGRAEFQDLLYQNLRRVGANSSDAGTIV 62 Query: 47 PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + N+ M ++ + + + + ++ + Sbjct: 63 PSGVQVGLGVKTAAVNRIMTQGNMNNTENKLDVAIQGRGYFRIE------LPSGDDAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL 123 + L Sbjct: 117 AGTFDIGPDGQLITADGYTL 136 >gi|157959900|ref|YP_001499934.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157844900|gb|ABV85399.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 21/206 (10%), Positives = 55/206 (26%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ Q+ + ++ +V + F + Sbjct: 51 QPGGQVDEQNQLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + + ++ V + + ++ Sbjct: 111 DVSFTRDGQFYRDSDGLMVTSQGLPLVPNIQIPDEALTVTIASDGIVSAQMAGQADSQEL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + + + VN+ E Sbjct: 171 GQITLVNFTNPAGLEARGSNL--YRETGASGAAIEGIAGDEALGQVRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 14/185 (7%), Positives = 39/185 (21%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K + + + Q F ++E Sbjct: 61 QLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANGDVS------F 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + L + E + + ++ AD + +I+ Sbjct: 115 TRDGQFYRDSDGLMVTSQGLPLVPNIQIPDEALTVTIASDGIVSAQMAGQADSQELGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 >gi|332187904|ref|ZP_08389637.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] gi|332012065|gb|EGI54137.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] Length = 262 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 4/231 (1%) Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + D + + + + + + + I + Sbjct: 28 ANVNTTGFKRDRAAFETLAYQTITAPGAASSTESKYATGLNLGTGVRIQGTARINTQGAM 87 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + ++ L + + + S Sbjct: 88 QTTNNSLDMALDGEGFFQVQMPGGTLGYTRAGNFSRSAEGLLVTSEGYQVMPGITVPEGA 147 Query: 365 VKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + G ++ +A L N + E S + ++ Sbjct: 148 TQITIGTDGTVSATIQGQTAPAEIGQIQIATFPNPAGLQSKGDNYLT--ETAASGAVNMG 205 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + I + VN+ EEL +I+ +++Y +++K+I TD+MLQ Sbjct: 206 VAGLEGRGQIRQGMLEGSNVNVVEELVDMIETQRAYEVNSKMIKSTDEMLQ 256 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 18/214 (8%), Positives = 45/214 (21%), Gaps = 37/214 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS A + A+ + + I N+ N + + R Sbjct: 1 MS-SAAMHIARTGLDAQDMRMRVISNNLANVNTTGFKRDRAAFETLAYQTITAPGAASST 59 Query: 46 ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 V + N + ++++ + F ++ Sbjct: 60 ESKYATGLNLGTGVRIQGTARIN---TQGAMQTTNNSLDMALDGEGFFQVQ------MPG 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADAD 153 S E + + + T + +Q A A+ Sbjct: 111 GTLGYTRAGNFSRSAEGLLVTSEGYQVMPGITVPEGATQITIGTDGTVSATIQGQTAPAE 170 Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + N + + + Sbjct: 171 IGQIQIATFPNPAGLQSKGDNYLTETAASGAVNM 204 >gi|302037628|ref|YP_003797950.1| flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] gi|300605692|emb|CBK42025.1| Flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] Length = 263 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 53/183 (28%), Gaps = 1/183 (0%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + + + D + + + + V Sbjct: 81 WVQGNMRQTGNDLDLAIDGAGFFQVTRPDGTIMYTRNGSFKRDNVGNLVTGDGDQLNPVI 140 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD- 417 +K G ++ + + + + A +L+ S Sbjct: 141 TIPSGALKIDVGQDGTVSVLLPGVTQASQVGQIQLVRFDNPSGLVAMGGNLFLDSFASGP 200 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + F + + + + VNL EE+ +I ++SY I++K I +D+M+Q Sbjct: 201 AQQGTGGFSTGFGTLQQGFLESSNVNLAEEMVNMIIAQRSYEINSKTIQASDEMMQIANN 260 Query: 478 GVK 480 + Sbjct: 261 LRR 263 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 9/153 (5%), Positives = 23/153 (15%), Gaps = 27/153 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A +I N+ N + + R Sbjct: 1 MIRAMWTAATGMTAQQLNVDTIANNLANVNTNAFKRSRAEFGDLLYQIQRLPGTNASNVG 60 Query: 57 S---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 K + + + F + Sbjct: 61 VFPVGVQVGGGVRPITVAKEWVQGNMRQTGNDLDLAIDGAGFFQV------TRPDGTIMY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + D L + + + Sbjct: 115 TRNGSFKRDNVGNLVTGDGDQLNPVITIPSGAL 147 >gi|114562344|ref|YP_749857.1| flagellar basal body rod protein FlgG [Shewanella frigidimarina NCIMB 400] gi|114333637|gb|ABI71019.1| flagellar basal-body rod protein FlgG [Shewanella frigidimarina NCIMB 400] Length = 262 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 3/161 (1%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 E + S + ++ ++ + +G Sbjct: 98 EGSGFFEVQMPDGTAAYTRNGQFSLDDTGQIVTPGSGYVVQPPITIPDDSTSITVSASGE 157 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 + + ++ + L +N S + S Sbjct: 158 VSVQTPGTAA-SQVIGQLTMTDFINPAGLDPLGQNLYTETG--ASGTPIQGTASLDGLGS 214 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 I + T VN+ EEL LI+ ++ Y +++K+I D+ML Sbjct: 215 IRQGALETSNVNVTEELVNLIQGQRIYEMNSKVISAVDQML 255 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 11/165 (6%), Positives = 34/165 (20%), Gaps = 15/165 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60 + ++ + A I N+ NA + + + S+N Sbjct: 1 MHPALWISKTGVDAQQTNIAVISNNVANASTVGFKKSRAVFEDLLYQTVNQAGGISSDNS 60 Query: 61 NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + L + + Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGSGFFEVQMPDGTAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + + I ++ +++ EV Sbjct: 121 SLDDTGQIVTPGSGYVVQPPITIPDDSTSITVSASGEVSVQTPGT 165 >gi|238752865|ref|ZP_04614330.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] gi|238708904|gb|EEQ01157.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N+ +S + L N + E S + Sbjct: 143 PAGSSNLAIGKDGTVTAQVGGESEPAELGQITLVDFVNPAGLEAVGGNM--YKETVASGT 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + F + V + EE+ +I V+++Y ++ K++ D ML Sbjct: 201 AVEGVPGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 52/245 (21%), Gaps = 37/245 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + +I N+ N + + R + Sbjct: 1 MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGTPLDQNN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + K + + + F ++ Sbjct: 61 ATPNGIQLGSGVKVVGTQ---KQFTVGNIKVTKGELDVAIAGKGFFQIE------TSDGG 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155 L + + N L + A + T +V A+ Sbjct: 112 LAYTRAGNLAINADGVLVNAQGMPLIPQIELPAGSSNLAIGKDGTVTAQVGGESEPAELG 171 Query: 156 IELEISNLRRFLSELTVVND-AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + E N + + + + L E + + Sbjct: 172 QITLVDFVNPAGLEAVGGNMYKETVASGTAVEGVPGEEAFGQLEHGSLEGSNVQVVEEMV 231 Query: 215 NDMVV 219 + + V Sbjct: 232 DMITV 236 >gi|260762610|ref|ZP_05874944.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] gi|260673033|gb|EEX59854.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 243 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + I + + + + + + Sbjct: 46 GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 105 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + Q + + V + +A L Sbjct: 106 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 165 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I + Y V+ +E++ LI +++Y + Sbjct: 166 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 223 Query: 461 SNKLIMFTDKM 471 ++K+I D+M Sbjct: 224 NSKVIQAADEM 234 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/168 (5%), Positives = 35/168 (20%), Gaps = 34/168 (20%) Query: 24 IVRNIENADNKNYVRRDTMTTI-------------------------SPENVTVVTQRSE 58 I NI N + + R T V R Sbjct: 2 IANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAVR-- 59 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + + ++ + + + L Sbjct: 60 -NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETLYTRAGAFNKNADGQLVTL 112 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + + + + + K++ ++ +++ Sbjct: 113 DGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFT 160 >gi|167626157|ref|YP_001676451.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167356179|gb|ABZ78792.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 54/206 (26%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G++ ++ + ++ +V + F + Sbjct: 51 QPGGQVDEQNELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + ++ + V + + + Sbjct: 111 ELSYSRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTVTIASDGIVSAQMAGQTDAQEL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L N + E S + + I + VN+ E Sbjct: 171 GQITLVNFTNPAGLEARGNNL--YRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y ++ K++ +D ML Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 54/242 (22%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R V Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R + + + Q F ++E Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANGELS------Y 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E L + E + + ++ D + +I+ Sbjct: 115 SRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTVTIASDGIVSAQMAGQTDAQELGQIT 174 Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + N+ + AS + + + + G + V ++ Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVEEMVEMI 234 Query: 220 YT 221 T Sbjct: 235 ST 236 >gi|312136039|ref|YP_004003377.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor owensensis OL] gi|311776090|gb|ADQ05577.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor owensensis OL] Length = 267 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SIANNLKR 267 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 48/200 (24%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + ++ K+ E ++ + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDEMGRITYKDQEGQVQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193 >gi|299068734|emb|CBJ39973.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CMR15] Length = 260 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S I Q ++ + Sbjct: 82 TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + +A L N E S Sbjct: 142 VPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L + Sbjct: 200 TANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 57.7 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 58/242 (23%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + Q I N+ N + + R + T Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ F ++ Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + S + TV NA + + + ++ + + Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++N ++ + AS V + + + + V ++ Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 QT 236 >gi|154174905|ref|YP_001408076.1| flagellar basal body rod protein FlgG [Campylobacter curvus 525.92] gi|112802860|gb|EAU00204.1| flagellar basal-body rod protein FlgG [Campylobacter curvus 525.92] Length = 262 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ + ++ + F + D + + + N ++ + Sbjct: 76 AINKIFSQGYFKETSNNLDMVIAGNGFFQLQLPDGTTAYTRNGAFKLDSNGTIVNSDGYQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 V + + ++ +A L N +L Sbjct: 136 LIPQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQIANFINPAGLHSMGDN--NYL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + I + + V L EE++ LI +++Y ++K I +D M Sbjct: 194 ETAASGDAVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLITGQRAYEANSKAITTSDSM 253 Query: 472 LQTLLEGVK 480 L+ + + Sbjct: 254 LEIVNGLKR 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 36/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A Q NI N + Y + T Sbjct: 1 MMRSLYTAATGMIAQQTQIDVTSNNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK S+ + F L+ + Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQLQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N L ++ A + T + + +I Sbjct: 115 TRNGAFKLDSNGTIVNSDGYQLIPQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQ 174 Query: 162 NLR 164 Sbjct: 175 IAN 177 >gi|17548568|ref|NP_521908.1| flagellar basal-body rod protein FlgG [Ralstonia solanacearum GMI1000] gi|17430816|emb|CAD17498.1| probable flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum GMI1000] Length = 260 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S I Q ++ + Sbjct: 82 TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + +A L N E S Sbjct: 142 VPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L + Sbjct: 200 TANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 58/242 (23%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + Q I N+ N + + R + T Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ F ++ Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + S + TV NA + + + ++ + + Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++N ++ + AS + + + + + V ++ Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 QT 236 >gi|301645415|ref|ZP_07245356.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|301076299|gb|EFK91105.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 2/183 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + E A N + F+ + D + + + + ++ Sbjct: 77 TQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 NV DS + L A N +LE Sbjct: 137 QPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTLVNFANPAGLSAEADNL--YLE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + ++ V++ E+ +I V+++Y ++ K++ D ML Sbjct: 195 TAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDML 254 Query: 473 QTL 475 Q + Sbjct: 255 QYI 257 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A ++ + + ++I NI N + + R M Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + +A+ + Q F ++ + Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + N L + A F + D+D +++ Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLT 174 Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + ++ AS + + + + + G + + N ++ Sbjct: 175 LVNFANPAGLSAEADNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234 Query: 220 YT 221 Sbjct: 235 TV 236 >gi|146277706|ref|YP_001167865.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] gi|145555947|gb|ABP70560.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] Length = 262 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 8/157 (5%) Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + Q TI Y P G+VS + PD Sbjct: 112 RMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISADGIVSVLMPDETEA--- 168 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 + +A L +E S + + F + + + Sbjct: 169 ---QEVGQITIATFANPRGLQPVGETFA--VETAASGEAAIGNPVEPGFGKLVQGALESS 223 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 VN+ +EL +I+ +++Y +++K I +D+M+Q L Sbjct: 224 NVNVVQELVDMIETQRAYEVNSKSISASDEMMQYLAN 260 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 30/148 (20%), Gaps = 34/148 (22%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS + A+ N + I N+ N + + R Sbjct: 1 MS-TNAMHVAKTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSE 59 Query: 44 -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + V VV+ L +A+ F + Sbjct: 60 ATAMTSPSAVGTGVRVVSTEKL---YTQGSLANTDNALDLAIDGPGFFQVL------LPD 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILG 124 + E S ++ Sbjct: 111 GRMGYTRNGTFSQNAEGTITTPSGYVVQ 138 >gi|51246533|ref|YP_066417.1| flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] gi|50877570|emb|CAG37410.1| probable flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 2/256 (0%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 GTT + +I+ N V + Q VP + + Sbjct: 4 SLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDTESP 63 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 ++ + + +V + + F D + K + + Sbjct: 64 TGILVGLGVKPAAVTKVFTQGDLIQTENELDVAIQGRGFFQIEAPDGNIKYTRAGAFKRD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N + S+ + V + DS +AG Sbjct: 124 SNGRMTSSDGYPLIPEITIPSGAKQVSIGETGIVSVKLDSDSTETEIGTIELAGFTNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N S + + + + + + + Y VNL E++ +I +++Y Sbjct: 184 LAAIGKNLFEETG--ASGTATIGIPGEEGYGTLIQQYLEGSNVNLVAEMAAMISTQRAYE 241 Query: 460 ISNKLIMFTDKMLQTL 475 I++ ++ +D+M+QT+ Sbjct: 242 INSSMVKTSDQMMQTV 257 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 8/164 (4%), Positives = 24/164 (14%), Gaps = 33/164 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + I N+ N + + + Sbjct: 1 MFRSLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V L + + + F ++ N Sbjct: 61 ESPTGILVGLGVKPAAVTKV---FTQGDLIQTENELDVAIQGRGFFQIE------APDGN 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 + + L + + + + Sbjct: 112 IKYTRAGAFKRDSNGRMTSSDGYPLIPEITIPSGAKQVSIGETG 155 >gi|167905092|ref|ZP_02492297.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] Length = 258 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + FI + + + + +I + Sbjct: 73 TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 132 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S +A LL N ++E Sbjct: 133 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 190 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + VF I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 191 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 250 Query: 473 QTLLEGVK 480 Q L + + Sbjct: 251 QQLSQAAR 258 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 11/139 (7%), Positives = 32/139 (23%), Gaps = 27/139 (19%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ISPE 48 ++ + ++ N+ N + + R + SP Sbjct: 1 MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60 Query: 49 NVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + + D + ++ + + F + + Sbjct: 61 GIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGYTRAG 114 Query: 106 KLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 QLSINAEGLLVNAQGLPLQ 133 >gi|22127325|ref|NP_670748.1| flagellar basal body rod protein FlgG [Yersinia pestis KIM 10] gi|45442798|ref|NP_994337.1| flagellar basal body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|51597635|ref|YP_071826.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 32953] gi|108809053|ref|YP_652969.1| flagellar basal body rod protein FlgG [Yersinia pestis Antiqua] gi|108810750|ref|YP_646517.1| flagellar basal body rod protein FlgG [Yersinia pestis Nepal516] gi|145597819|ref|YP_001161895.1| flagellar basal body rod protein FlgG [Yersinia pestis Pestoides F] gi|150260247|ref|ZP_01916975.1| lateral flagellar basal body rod protein [Yersinia pestis CA88-4125] gi|153947407|ref|YP_001399636.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|162421910|ref|YP_001604845.1| flagellar basal body rod protein FlgG [Yersinia pestis Angola] gi|165925150|ref|ZP_02220982.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165939077|ref|ZP_02227629.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|166008679|ref|ZP_02229577.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166212222|ref|ZP_02238257.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|167399088|ref|ZP_02304612.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419078|ref|ZP_02310831.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425222|ref|ZP_02316975.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466335|ref|ZP_02331039.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1] gi|186896769|ref|YP_001873881.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|218927914|ref|YP_002345789.1| flagellar basal body rod protein FlgG [Yersinia pestis CO92] gi|229837410|ref|ZP_04457573.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|229840625|ref|ZP_04460784.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842824|ref|ZP_04462976.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229900947|ref|ZP_04516071.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|270487670|ref|ZP_06204744.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294502791|ref|YP_003566853.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003] gi|21960406|gb|AAM86999.1|AE013948_7 flagellar biosynthesis protein, cell-distal portion of basal-body rod [Yersinia pestis KIM 10] gi|45437664|gb|AAS63214.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|51590917|emb|CAH22573.1| putative flagellar basal-body rod protein [Yersinia pseudotuberculosis IP 32953] gi|108774398|gb|ABG16917.1| flagellar basal-body rod protein [Yersinia pestis Nepal516] gi|108780966|gb|ABG15024.1| putative flagellar basal-body rod protein [Yersinia pestis Antiqua] gi|115346525|emb|CAL19402.1| putative flagellar basal-body rod protein [Yersinia pestis CO92] gi|145209515|gb|ABP38922.1| flagellar basal-body rod protein [Yersinia pestis Pestoides F] gi|149289655|gb|EDM39732.1| lateral flagellar basal body rod protein [Yersinia pestis CA88-4125] gi|152958902|gb|ABS46363.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|162354725|gb|ABX88673.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165913033|gb|EDR31658.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|165923350|gb|EDR40501.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165992018|gb|EDR44319.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166206968|gb|EDR51448.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|166963072|gb|EDR59093.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051592|gb|EDR63000.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055985|gb|EDR65766.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699795|gb|ACC90424.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|229682286|gb|EEO78378.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|229690091|gb|EEO82148.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229696991|gb|EEO87038.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705533|gb|EEO91543.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|262360823|gb|ACY57544.1| putative flagellar basal-body rod protein [Yersinia pestis D106004] gi|262364768|gb|ACY61325.1| putative flagellar basal-body rod protein [Yersinia pestis D182038] gi|270336174|gb|EFA46951.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294353250|gb|ADE63591.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003] gi|320016709|gb|ADW00281.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + L N + E S + + F + + V + Sbjct: 169 EVGQITLVNFINPAGLEAIGGNL--YRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQV 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EE+ +I V+++Y ++ K++ D ML Sbjct: 227 VEEMVDMITVQRAYEMNAKMVSAADDML 254 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 12/186 (6%), Positives = 38/186 (20%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + + ++ + +I N+ N + + R + Sbjct: 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNN 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + + + Q F ++ Sbjct: 61 TTPSGIQFGSGVQIVGTQK---QFTVGNIKVTKGDMDVAITGQGFFQIE------TADGG 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L + + N L + + + + + Sbjct: 112 IAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTGSKQLHIGKDGTVTATVGGETEPVEVG 171 Query: 159 EISNLR 164 +I+ + Sbjct: 172 QITLVN 177 >gi|238762358|ref|ZP_04623329.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] gi|238699343|gb|EEP92089.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] Length = 261 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 2/114 (1%) Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ ++ + L N + E S + Sbjct: 143 PAGANDLAIGKDGTVTARLGGEAEPAELGQITLVNFVNPAGLEAVGGNM--YKETVASGT 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + F + V + EE+ +I V+++Y ++ K++ D ML Sbjct: 201 AVEGVPGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/186 (8%), Positives = 38/186 (20%), Gaps = 33/186 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + ++ + +I N+ N + + R + Sbjct: 1 MNPALWISKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRSPGSPLNQNT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + Q F ++ Sbjct: 61 ATPNGIQFGSGVKVVGTQK---QFTVGNIKVTKGEFDVAIAGQGFFQIE------TADGG 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L + + N L + A ++ +A+ Sbjct: 112 LAYTRAGNLSINADGVLTNAQGMPLIPQIELPAGANDLAIGKDGTVTARLGGEAEPAELG 171 Query: 159 EISNLR 164 +I+ + Sbjct: 172 QITLVN 177 >gi|118581835|ref|YP_903085.1| hypothetical protein Ppro_3435 [Pelobacter propionicus DSM 2379] gi|118504545|gb|ABL01028.1| protein of unknown function DUF1078 domain protein [Pelobacter propionicus DSM 2379] Length = 259 Score = 66.6 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V N I + V++ + LI+ +Q+Y ++K I D+M +L ++ Sbjct: 202 SAADGVVNKIYSNSLEASNVDMASQFVRLIQTQQAYTANSKTITTADEMTDVVLNLIR 259 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 2/125 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSE 58 MSL + ++ I N+ N + + T+ + Sbjct: 1 MSLTSAMLTGVTGLLANAEDINVIGNNLANVNTVGFKGSRTLFSDLLSTNIGNDSQIGRG 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + + + SS + + + R + + Y N Sbjct: 61 TQIQKVDNIISQSSFDTTEITSDLAIQGSSFFLLESTTGSRYVTRAGAFRMNEDGYLVNP 120 Query: 119 SEDIL 123 + Sbjct: 121 DGYFV 125 >gi|313895889|ref|ZP_07829443.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975314|gb|EFR40775.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 274 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/277 (8%), Positives = 64/277 (23%), Gaps = 36/277 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + + + I NI N + + Sbjct: 1 MMRSMFSGVSGLKSHQTRMDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAAAPGTTIG 60 Query: 47 -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V+V + + D + + + Sbjct: 61 GTNPKQIGLGVSVGSI---DTIFTDGSVQGTGKNTDLA------LSGGNSTFIVKRGEQT 111 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE---VQKIRADADKEI 156 + + + ++ E + A E V+ + K Sbjct: 112 YYTRNGAFEFDAKGNYVLPGSGLHVQGWVNKTTEHSKVSTEGAVENIVVETGKMMPPKAT 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 E + + + + A D + SE ++ + + Sbjct: 172 EKATYSENLDSTTPMITGYTFSDTRTTPPTAVVRTSANDGMYITASEAQPVTLSLSDGTK 231 Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 V TS T+ ++P+ +F ++ ++ ++ Sbjct: 232 RTV-TSGTYTIGRSMPKVTSFAYYDTLGKNMRASSLW 267 >gi|222824019|ref|YP_002575593.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] gi|222539241|gb|ACM64342.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] Length = 264 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 3/182 (1%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S + + + N R ++ Sbjct: 85 SLKQTSTAGLDMAIAGNNGFFQIQMPDGTIAYTRNGQFTKDAEGNIVNSDGYRLLPEMTI 144 Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N+A + + ++ + L N + +E + S + Sbjct: 145 PEDATAINVASDGTISVMQPGNTAETQIGQIELVNFINPAGLHALGDNLL--VETDASGA 202 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + F+ I + V L EE++ LI +++Y +K I +D ML + + Sbjct: 203 PIAGIAGENGFSPIKHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQL 262 Query: 479 VK 480 + Sbjct: 263 KR 264 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 15/186 (8%), Positives = 33/186 (17%), Gaps = 31/186 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + + Q NI N + Y + Sbjct: 1 MLRSLYTAASGMVSQQTQIDVTSNNISNVNTVGYKKSRAEFADLMYQTMKYAGTSTSSTT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V K ++ + + +M Sbjct: 61 KHPSGIEVGLGSRVTAISKIFSEGSLKQ--TSTAGLDMAIAGNNGFFQIQM-----PDGT 113 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E N L + + N + + + Sbjct: 114 IAYTRNGQFTKDAEGNIVNSDGYRLLPEMTIPEDATAINVASDGTISVMQPGNTAETQIG 173 Query: 159 EISNLR 164 +I + Sbjct: 174 QIELVN 179 >gi|21231395|ref|NP_637312.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768552|ref|YP_243314.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. 8004] gi|188991639|ref|YP_001903649.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. B100] gi|325916945|ref|ZP_08179189.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] gi|21113060|gb|AAM41236.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573884|gb|AAY49294.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. 8004] gi|167733399|emb|CAP51600.1| unnamed protein product [Xanthomonas campestris pv. campestris] gi|325536848|gb|EGD08600.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] Length = 261 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G A Q+ + ++ + ++ A + F + D Sbjct: 52 PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + I + +N + G + ++ + + + Sbjct: 112 SAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N ++E S + VN EE Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +I+ +++Y ++ K I TD ML L V Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T S R L + S Sbjct: 61 QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILG 124 + + + S L Sbjct: 118 GTFQINAQGEVVTNSGYPLQ 137 >gi|315121847|ref|YP_004062336.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495249|gb|ADR51848.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 3/192 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q+ + V + + V + D + S I Q ++ Sbjct: 74 QISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTSD 133 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G + + + +S + +A L N + Sbjct: 134 GNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLLIANFVNEAGLRNIGDNLV 193 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + F HI + Y V+ +E+S +I +++Y +++K+I Sbjct: 194 TR--TSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIQAA 251 Query: 469 DKMLQTLLEGVK 480 D+M +L+ ++ Sbjct: 252 DEM-SSLVSKMR 262 Score = 38.5 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 38/185 (20%), Gaps = 35/185 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 F A + I NI N + Y R Sbjct: 3 AFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQSV 62 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + R L +++ + + + ++ Sbjct: 63 VPEGINIGSGVQISSVR---NVYTQGELVHTGNSLDLALVGRGWFQVE------TPDKTV 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + L + E + S + + ++D + + Sbjct: 114 MYTRAGSFNIDSKGQLVTSDGNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQ 173 Query: 160 ISNLR 164 + Sbjct: 174 LLIAN 178 >gi|126444737|ref|YP_001061248.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126224228|gb|ABN87733.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] Length = 262 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + FI + + D + +I + Sbjct: 77 TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGDTGYTRAGQLSINAEGLLVNAQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S +A LL N ++E Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + VF I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254 Query: 473 QTLLEGVK 480 Q L + + Sbjct: 255 QQLSQAAR 262 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 34/143 (23%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + ++ N+ N + + R + Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + + + D + ++ + + F + ++ Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGDTGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137 >gi|21242725|ref|NP_642307.1| flagellar basal body rod protein FlgG [Xanthomonas axonopodis pv. citri str. 306] gi|78047584|ref|YP_363759.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624042|ref|ZP_06702805.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665577|ref|ZP_06730858.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927973|ref|ZP_08189194.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] gi|21108201|gb|AAM36843.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas axonopodis pv. citri str. 306] gi|78036014|emb|CAJ23705.1| flagella basal body rod protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601661|gb|EFF45635.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604675|gb|EFF48045.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541658|gb|EGD13179.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] Length = 261 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G A Q+ + ++ + ++ A + F + D Sbjct: 52 PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + I + +N + G + ++ + + + Sbjct: 112 SAYTRDGTFQINAQGELVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N ++E S + VN EE Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +I+ +++Y ++ K I TD ML L V Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T S R L + S Sbjct: 61 QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILG 124 + + + S L Sbjct: 118 GTFQINAQGELVTNSGYPLQ 137 >gi|83747652|ref|ZP_00944688.1| FlgG [Ralstonia solanacearum UW551] gi|207728348|ref|YP_002256742.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|207739735|ref|YP_002258128.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|300696915|ref|YP_003747576.1| FlgG: flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] gi|83725704|gb|EAP72846.1| FlgG [Ralstonia solanacearum UW551] gi|206591594|emb|CAQ57206.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|206593117|emb|CAQ60023.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|299073639|emb|CBJ53159.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] Length = 260 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S I Q ++ + Sbjct: 82 TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + +A L N E S Sbjct: 142 VPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L + Sbjct: 200 TANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 32/183 (17%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + Q I N+ N + + R + T Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ F ++ Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + S + V + Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQ 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|261341492|ref|ZP_05969350.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288316288|gb|EFC55226.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 20/212 (9%), Positives = 58/212 (27%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G++ + ++ + + + F D D Sbjct: 52 PGGQLDQNNTSPTGIQFGTGVKILGTQKEFSTGNIQNTGQKLDVAITGQGFFQVETSDGD 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + + + +++ ++ Sbjct: 112 IAYTRAGNFQKNPDGMLTNAQGLPLVPQIELPDNVKDIQIGKDGTVTATVAGETDPVELG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N + E S + + F + + V + EE Sbjct: 172 QITLVNFVNPAGLEAIGGNL--YRETAASGEAVEGVAGEEAFGQLEQGSLEGSNVQVVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +I V+++Y ++ K++ D ML+ + + + Sbjct: 230 MVDMITVQRAYEMNAKMVSAADDMLKFVTQSM 261 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + ++I N+ N + + R M Sbjct: 1 MNPALWISKTGLAAQDAKMSAISNNLANVNTTGFKRDRVMFADLFYQNQRTPGGQLDQNN 60 Query: 45 ISPENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + T K + + Q F ++ + Sbjct: 61 TSPTGIQFGTGVKILGTQKEFSTGNIQNTGQKLDVAITGQGFFQVE------TSDGDIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + N L + + + D +I+ Sbjct: 115 TRAGNFQKNPDGMLTNAQGLPLVPQIELPDNVKDIQIGKDGTVTATVAGETDPVELGQIT 174 Query: 162 NLR 164 + Sbjct: 175 LVN 177 >gi|329898287|ref|ZP_08272370.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] gi|328920852|gb|EGG28295.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] Length = 261 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 A + F D + S + Q + L ++ Sbjct: 91 NALDLAIAGRGFFQIQQADGTFAYTRDGSFKLNDQGQVITASGQLMVPAITVPVNSASLT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + +A L RN + E S ++ + Sbjct: 151 VGRDGTVDAELEAGAGKVTLGQIQLARFINEAGLQSIGRNL--YRETTASGPVEVGVPGI 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +++ VN+ EE+ +I+ +++Y +++K I D ML Sbjct: 209 SGIGELTQGSLEASNVNVVEEMVNMIETQRAYEVNSKAISAADGML 254 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 15/196 (7%), Positives = 44/196 (22%), Gaps = 30/196 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A A+ + I N+ N + + + + Sbjct: 1 MDASLWVAKTGLTAQQMRMTVIANNLANVNTVGFKKDRAVFEDLLYQNVRQPGASADAQT 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + + T + + +A+ + F +++ Sbjct: 61 IAPTGLMLGTGTRIIATEKIHRQGNMISTENALDLAIAGRGFFQIQQA------DGTFAY 114 Query: 102 HYISKLRDSLESYSKNLSE---DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + S +++A V T E++ Sbjct: 115 TRDGSFKLNDQGQVITASGQLMVPAITVPVNSASLTVGRDGTVDAELEAGAGKVTLGQIQ 174 Query: 159 EISNLRRFLSELTVVN 174 + + N Sbjct: 175 LARFINEAGLQSIGRN 190 >gi|94495411|ref|ZP_01301991.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58] gi|94424799|gb|EAT09820.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58] Length = 281 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 60/265 (22%), Gaps = 11/265 (4%) Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273 N + + + I + I Sbjct: 26 NVNSTAFKKSKAQFGDIFAASPMQTTHQVAGQGVRVQGITQQFTQGTIETTDKTLDLAIT 85 Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + A + D + + Sbjct: 86 GEGFFTVKGEDGTISYTRNGAFSVDNDRFAVDTTGSRIQVFAVDPETGDLTTPPTS---- 141 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 P ++ + + ++ + Y D +A Sbjct: 142 -----ATGPGDLTDLQIPTTYNNEADGAQLTSVGVSKEGLVSAIYADGSTVYLGQVAMAS 196 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N+ L + W S + L +Q +F ++ V++ +EL LI Sbjct: 197 FNSLEGLRQQGDAH--WTSTVESGNPILGTANQGMFGSVNSGSLERSNVDITDELVQLIA 254 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 ++++ ++K I + + T++ Sbjct: 255 AQRNFQANSKAIEAANTLTTTIVNI 279 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/196 (7%), Positives = 43/196 (21%), Gaps = 22/196 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVTV 52 F + + A ++I N+ N ++ + + + + V V Sbjct: 2 SFYVSLSGLKGAQADLSAISNNVANVNSTAFKKSKAQFGDIFAASPMQTTHQVAGQGVRV 61 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + F + + Sbjct: 62 QGITQ---QFTQGTIETTDKTLDLAITGEGFFTV------KGEDGTISYTRNGAFSVDND 112 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 ++ + + + +D + TSA + ++ + S Sbjct: 113 RFAVDTTGSRIQVFAVDPETGDLTTPPTSATGPGDLTDLQIPTTYNNEADGAQLTSVGVS 172 Query: 173 VNDAIKFKTASKHDAH 188 + A + Sbjct: 173 KEGLVSAIYADGSTVY 188 >gi|330899401|gb|EGH30820.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 348 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 26/266 (9%), Positives = 47/266 (17%), Gaps = 13/266 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59 FN + A++ NI N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + S G L + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +D VV + +R +A S + + + Sbjct: 121 NMKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVA 174 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + Sbjct: 175 TFDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPD 234 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS 265 N T S N + G V ++ + Sbjct: 235 KNDLTFDSSGNLVTTAGAAVPTDSAN 260 >gi|134280724|ref|ZP_01767434.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167725932|ref|ZP_02409168.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|125657220|gb|ABN48708.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei] gi|134247746|gb|EBA47830.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] Length = 262 Score = 66.6 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + FI + + + + +I + Sbjct: 77 TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S +A LL N ++E Sbjct: 137 QPEISIPENAADIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + VF I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254 Query: 473 QTLLEGVK 480 Q L + + Sbjct: 255 QQLSQAAR 262 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 33/143 (23%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + ++ N+ N + + R + Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + + + D + ++ + + F + + Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137 >gi|56460250|ref|YP_155531.1| flagellar basal body rod protein FlgG [Idiomarina loihiensis L2TR] gi|56179260|gb|AAV81982.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 262 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 69/208 (33%), Gaps = 3/208 (1%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 P G+ ++ + ++ ++ + + + + F + D Sbjct: 50 NQPGGQSAQDTELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMIDGKGFFQVLMPD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNK 384 + + ++ + ++ + ++ +++ ++ + + N Sbjct: 110 GNISYTRNGQFSLNEEGEIVTSGNGYTIEPAIQIPEDAMSVSISQEGEVTVTQPGNPDNV 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + L +N + E S + + + + T VN+ Sbjct: 170 VVGQINLVNFINPAGLQPMGQNL--YKETAVSGAPLEAVPGVDGMGNTIQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EEL LI+ ++ Y +++K+I D+ML Sbjct: 228 TEELVNLIESQRGYEMNSKVISSVDQML 255 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/178 (8%), Positives = 43/178 (24%), Gaps = 16/178 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + + + I N+ N+ + + + P + Sbjct: 1 MNPALWISKTGLDAQQRDISVISNNLANSSTIGFKKSRAVFEDLLYQNINQPGGQSAQDT 60 Query: 56 R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + H + L K N + Sbjct: 61 ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMIDGKGFFQVLMPDGNISYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEISNLR 164 + E + I E+ + + EV + D + +I+ + Sbjct: 121 SLNEEGEIVTSGNGYTIEPAIQIPEDAMSVSISQEGEVTVTQPGNPDNVVVGQINLVN 178 >gi|255261552|ref|ZP_05340894.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] gi|255103887|gb|EET46561.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] Length = 261 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 8/211 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + D V QL R S + + I Sbjct: 52 GTINAADGTVLPTGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEVTLPNGN 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---- 389 + T + + + G + ++ + + + Sbjct: 112 AAYTRDGGLKRTGDGLIVTSDGFPVVPDITIPRDARSISINAEGEIYGYFTDRVEPELLG 171 Query: 390 --PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 ++G L N +LE + S + Q + + Y V+ +E Sbjct: 172 QFTLSGFTNPRGLEAIGNNL--FLETSASGPSIVTEPGQDGLGVLRQGYLEDSSVDPVKE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ LI+ ++ Y +++K+I D+ML ++++ Sbjct: 230 VTDLIEAQRGYELNSKVITAADQMLSSMVQI 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 28/140 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + I N+ N + Y R Sbjct: 3 ALQIAATGMAAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQIARPGTINAADGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L A + + + + N+ Sbjct: 63 PTGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEV------TLPNGNAAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL 123 L+ + + + Sbjct: 117 DGGLKRTGDGLIVTSDGFPV 136 >gi|121602345|ref|YP_989400.1| flagellar basal body rod protein FlgG [Bartonella bacilliformis KC583] gi|120614522|gb|ABM45123.1| flagellar basal-body rod protein FlgG [Bartonella bacilliformis KC583] Length = 264 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 35/184 (19%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 + A I N+ N + Y R Sbjct: 5 SLSIAATGMAAQQTNLDVIANNLANINTTGYKRARAEFADLMYVTDRAVGVPNMMNQAIV 64 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ N +A+ + +++ N Sbjct: 65 PEGVMVGMGVRTAAVRTVN---TQGAFIQTGNALDLAINGNGWFEIQD------PNGNVF 115 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S L +++ + + K +AD + Sbjct: 116 YTRSGAFNLSETGQVVTLDGNVVQPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRL 175 Query: 161 SNLR 164 + + Sbjct: 176 NLVN 179 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 56/191 (29%), Gaps = 2/191 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 V+ + + V + A + + + + + + + Sbjct: 67 GVMVGMGVRTAAVRTVNTQGAFIQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSE 126 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Q + + ++ ++ + V L Sbjct: 127 TGQVVTLDGNVVQPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRLNLVNFVNEVGL 186 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N + E S + + + I ++ V+ +E++ LI ++SY + Sbjct: 187 EPVGDNL--FRETPASGAPVPGNPKEDGYGSIMQATLEASNVDPVKEITELITAQRSYEM 244 Query: 461 SNKLIMFTDKM 471 ++K+I +D+M Sbjct: 245 TSKVIQASDEM 255 >gi|86750926|ref|YP_487422.1| hypothetical protein RPB_3817 [Rhodopseudomonas palustris HaA2] gi|86573954|gb|ABD08511.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 598 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 45/462 (9%), Positives = 107/462 (23%), Gaps = 29/462 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + S +I NI N+ + R DT Q + + Sbjct: 1 MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTSFLDLIPQAGTNQQLAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109 ++ + S ++ + E A + Sbjct: 61 TAESRLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID ++ D E + + + Sbjct: 121 DKNGYLVNGAGYYLQGVAIDPTTGNP-----VGSTPTVLKFQNDFLPSQETTKINYRANL 175 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + + D + ++S + + + D T + Sbjct: 176 ARYPLTTKQDTSIPGSELLRAADFANNP--QVSGTTPPPFGDNSRAGLQINAKDATPITG 233 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + + I ++G ++ G A DS + ++ Sbjct: 234 ATTLSGAASTDSIGVNFAVGDTIVVNGTTITFTA----SGGTDDATNIPVDSTITNLLSK 289 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 +D ++ S + ++ L I + I Sbjct: 290 IDAISGGGAASTVTSGALELHTGTASDLTITSTSAAFASLGLTSPFSVIRTGGGTVGTGQ 349 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR---- 405 + + Y F I G + + + Sbjct: 350 VIGTDNQTFLDESISGGATTAYDGSGAPVNVQFRWAKIDSATLGTGHSDVWNLFYQVNPD 409 Query: 406 ---NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ W N + + + + V ++ + GV+L Sbjct: 410 ATGTAVAWQNVNTNFTFNSSGQMNPVIGQLTLTNLTVSGVSL 451 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 36/425 (8%), Positives = 106/425 (24%), Gaps = 22/425 (5%) Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 ++ + + +P + R L+ +K+ + T+ Sbjct: 181 TTKQDTSIPGSELLRAADFANNPQVSGTTPPPFGDNSRAGLQINAKDATPITGATTLSGA 240 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 A N + + + ++ + + + + + A Sbjct: 241 ASTDSIGVNFAVGDTIVVNGTTITFTASGGTDDATNIPVDSTITNLLSKIDAISGGGAAS 300 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250 L ++ + + + ++ T + ++ + + Sbjct: 301 TVTSGALELHTGTASDLTITSTSAAFASLGLTSPFSVIRTGGGTVGTGQVIGTDNQTFLD 360 Query: 251 PIFIDGVVVSSN---------------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 G + + + + G + Sbjct: 361 ESISGGATTAYDGSGAPVNVQFRWAKIDSATLGTGHSDVWNLFYQVNPDATGTAVAWQNV 420 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 +F+ + + + L N + + N + Sbjct: 421 NTNFTFNSSGQMNPVIGQLTLTNLTVSGVSLGNVTMSFGTGGLTQFSDTNGNVQVNQLQQ 480 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 +++ ++ Y + N + VA N L Sbjct: 481 DGYAAGQLTSVSVSNEGRVVGSYSNGRNIDLAEVSVATFNGANFLKRI-------DGGAF 533 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ IS S + ++ +E + LI +Q+Y+ + K+I + M+Q L Sbjct: 534 EVTNESGEALYGKGGSISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDL 593 Query: 476 LEGVK 480 L ++ Sbjct: 594 LNVMR 598 >gi|296122947|ref|YP_003630725.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] gi|296015287|gb|ADG68526.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] Length = 266 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 56/215 (26%), Gaps = 2/215 (0%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + I + + ++ + + + Sbjct: 53 PGTQDTLGNYTPIGTAAGLGVRVAGTQIDFSQGALLETGRQLDMAITGDGFFMVRGNNQL 112 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + + + ++ L D ++ A + + Sbjct: 113 FYTRRGEFTVNSNGDVVLASADIGRLIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQ 172 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 +A L + + + S + I + + V Sbjct: 173 VGQIQLARFINPEGLYQAGESLYAV--TDASGQPLISNPGDQGLGLIRQGFLEISNVEPA 230 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EL LIK +++ +++++I +D++LQ + + Sbjct: 231 NELVDLIKTQRNVELNSQVIQASDQLLQLITNLRR 265 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/175 (9%), Positives = 34/175 (19%), Gaps = 14/175 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48 L A + +I N+ NA + R T Sbjct: 2 LYRAMYTAASGMQAYMFNLDTIANNLANAGTNGFKRSRTDFEDLYYQYYKLPGTQDTLGN 61 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + T + + A+ + + N + Sbjct: 62 YTPIGTAAGLGVRVAGTQIDFSQGALLETGRQLDMAITGDGFFMVRGNNQLFYTRRGEFT 121 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S DI + E A ++ ++ + Sbjct: 122 VNSNGDVVLASADIGRLIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQVGQI 176 >gi|262173356|ref|ZP_06041033.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|261890714|gb|EEY36701.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] Length = 250 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 2/180 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V ++ + + F D + + ++ Sbjct: 66 TQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 125 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + ++ D + +A L N + E Sbjct: 126 EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEAVGGNL--FRE 183 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + S + + Q I + V + EE+ +I +++Y ++ K++ TD ML Sbjct: 184 TDASGLAEELVAGQDGTGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSATDDML 243 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 27/140 (19%), Gaps = 27/140 (19%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SPENVTVVTQ 55 + +I N+ N + + R + P V + + Sbjct: 1 MAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVNELPTGVQLGSG 60 Query: 56 RSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + + Q F ++ + + E Sbjct: 61 VRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIEN------SDGQIMYTRNGQFHVNSE 114 Query: 113 SYSKNLSEDILGKTVIDNAE 132 N L + Sbjct: 115 GLMVNSQGLPLEPQIQIPDN 134 >gi|77918760|ref|YP_356575.1| flagellar basal body rod protein FlgG [Pelobacter carbinolicus DSM 2380] gi|77544843|gb|ABA88405.1| flagellar biosynthesis protein [Pelobacter carbinolicus DSM 2380] Length = 261 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 4/184 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + I + + + R S Sbjct: 80 VFTTGDFQQTGNDLDIAIEGSGFFEITLANGDTAYTRAGAFKKDGTGRIVTSDGYPLSPE 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + G + D N + + L N + E Sbjct: 140 IIIPENATQVSIGNYGAVEVLLDGQNTPTQIGTITLTRFSNPAGLNSIGHNL--FTETPT 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + + F +S+ + V++ EE+ +I +++Y I++K I D+MLQ Sbjct: 198 TGTPVTGNPGEDGFGSLSQGFLEGSNVSIMEEMVNMIAGQRAYEINSKAIKTADEMLQMT 257 Query: 476 LEGV 479 V Sbjct: 258 NNLV 261 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 8/162 (4%), Positives = 26/162 (16%), Gaps = 27/162 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENV 50 ++ + I N+ N ++ + + + V Sbjct: 1 MIRALWTSATGMEAQQVNMDVIAHNLANVNSAGFKKSRADFQDILYQTVKVAGSDGSSGV 60 Query: 51 T---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K + + F + ++ Sbjct: 61 EQPTSIQVGLGSRVAAIQKVFTTGDFQQTGNDLDIAIEGSGFFEI------TLANGDTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + L +I + Sbjct: 115 TRAGAFKKDGTGRIVTSDGYPLSPEIIIPENATQVSIGNYGA 156 >gi|89902479|ref|YP_524950.1| flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] gi|89347216|gb|ABD71419.1| Flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] Length = 260 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R ++ + F + D + S + Q + Sbjct: 76 ATSRSFAQGNLQQSGNKLDVAIQGNGFFQVTMPDGTTNYTRDGSFQVSSTGQLVTATGLP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G ++ + +A L +N Sbjct: 136 IANGVTVPANATSIAIAGDGTVTAQVPGTPTPQGIGSISLASFVNPAGLDPKGQNLYA-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + + + Y T VN+ +EL +I+ +++Y +++K I +D+M Sbjct: 194 ESTASGQPNSGTPGADGMGALMQGYVETSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTL 475 LQ L Sbjct: 254 LQKL 257 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 12/152 (7%), Positives = 31/152 (20%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ Q I N+ N + R + + Sbjct: 1 MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKRASAVFEDLMYQNLRQAGSNSSEQS 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +++ L + + F + + Sbjct: 61 QLPTGLQVGLGVRTVATSRSFAQGNLQQSGNKLDVAIQGNGFFQV------TMPDGTTNY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S + + V A Sbjct: 115 TRDGSFQVSSTGQLVTATGLPIANGVTVPANA 146 >gi|160896077|ref|YP_001561659.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] gi|160361661|gb|ABX33274.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] Length = 260 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 2/187 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 +R + ++ A + F + D + S + Q + Sbjct: 76 ATSRNFLQGALQQSNNALDVAIDGNGFFQVNMPDGTTAYTRDGSFQVDAQGQLVTASGMP 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G + V + + + ++ L +N Sbjct: 136 IANGVTIPQGATKVSISPEGVVSVTMAGQAAPQQVGNIAMSQFINPAGLEPRGQNLFT-- 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S I + Y VN+ +EL +I+ +++Y +++K I +D+M Sbjct: 194 ETASSGQPQQGQPGVNGMGMIKQGYLEGSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253 Query: 472 LQTLLEG 478 L L + Sbjct: 254 LAKLAQL 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 28/149 (18%), Gaps = 33/149 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ ++ Q I N+ N Y R + Sbjct: 1 MINSLFISKTGMEAQQTQLDVISHNLANVSTTGYKRASAVFEDLIYQNLRQSGAQTTEQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++A+ F + + Sbjct: 61 QLPTGLHLGLGVRTVATSRN---FLQGALQQSNNALDVAIDGNGFFQV------NMPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTV 127 + + + S + V Sbjct: 112 TAYTRDGSFQVDAQGQLVTASGMPIANGV 140 >gi|158422258|ref|YP_001523550.1| flagellar basal body rod protein FlgG [Azorhizobium caulinodans ORS 571] gi|158329147|dbj|BAF86632.1| flagellar basal-body rod FlgG protein [Azorhizobium caulinodans ORS 571] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 34/184 (18%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N I NI N + + R + Sbjct: 3 ALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFSDLLYQSERTQGIPNRDGGQAI 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V R L + + + + + Sbjct: 63 PEGAMLGLGVRTVGIR---NLHTQGPLTQTGNTLDLAVNGRGMFEI------TTPDGQTV 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S ++ + N S + I + ++ ++ Sbjct: 114 YTRAGSFNRSATGQLVTSDGYVINPAIQFPNNATEIQVNESGQVYATIPNQTNPQLLGQL 173 Query: 161 SNLR 164 + + Sbjct: 174 TLVN 177 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + D + S Q ++ ++ + Sbjct: 82 TQGPLTQTGNTLDLAVNGRGMFEITTPDGQTVYTRAGSFNRSATGQLVTSDGYVINPAIQ 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + N + E S Sbjct: 142 FPNNATEIQVNESGQVYATIPNQTNPQLLGQLTLVNFANESGMEPLGNNL--YRETLASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + V F I + Y V+ +E++ LI ++SY +++K+I D+M +T+ Sbjct: 200 QPIVGVAGDVGFGKIQQGYLEASNVDPVKEITELIAAQRSYEMNSKVIQAADEMSKTVST 259 Query: 478 GVK 480 G++ Sbjct: 260 GIR 262 >gi|32477561|ref|NP_870555.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|32448115|emb|CAD77632.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|327543123|gb|EGF29559.1| flagellar hook protein FlgE [Rhodopirellula baltica WH47] Length = 811 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 39/455 (8%), Positives = 95/455 (20%), Gaps = 35/455 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 M L + A + A Q I N+ NA + D + Sbjct: 1 MGLQSALTTALTGLSAAETQIDVIGNNLANAQTVGFKSSDAVFATQFLQTLSLGAGPSAN 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V + + + SS+ F ++ Sbjct: 61 NGGTNPRQIGLGVQVAEIAANHNQ---GTIEISSSSSDLAIQGDGFFQVQ------AADG 111 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + ++ N + L ID E+ ++ + + Sbjct: 112 EKLYTRNGIFKLNSDAELVNATGQRLLGYGID--EQFRLQTDSLVPLSVPLGTKTVAKAT 169 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 +S E V ++ D+ + + S I +++ Sbjct: 170 ENVSFEGTLTPEGDVATAGQVIESLHLGDSQVPRPDASGVSIESSPIADHTSVTGTVGAG 229 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + F V N ++ + +D + + + Sbjct: 230 SLPAGTYQYKFALVDASGNESAPSAARAFTVGANGNVDLGNLPQDPLGG-DFPTVNIYRT 288 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + + N + + G + S Sbjct: 289 GPNGTEFEYLASAAAGGTFNDDGSTALSGTPINEDTLTGNYTYMVTYYSSGDPESRPSSF 348 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + N D N + + G Sbjct: 349 LGPKSVVDGRITLSDFPTPPTPPAGGGFPAYDSIRIYRNLAGDQNNFYLVGEVAPGDTFT 408 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + + + D + S + + Sbjct: 409 DSATDAEISDLTDPGNQLLDMDGPAVNSNTLLTDV 443 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 37/416 (8%), Positives = 110/416 (26%), Gaps = 13/416 (3%) Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 ++ L L +M + N T + + + E + G+ Sbjct: 407 FTDSATDAEISDLTDPGNQLLDMDGPAVNSNTLLTDVLRRDGLTYEQVFSEGTLSYTGRK 466 Query: 127 VIDNAEEVVQNFNTSA--REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 N +++ +++ +DA L++ + + A Sbjct: 467 GGANLGTKELEITSTSTMQDLLDFISDASGIQTLQVDSSNPIPRSDNNITGESGDLVAGA 526 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + + + + I +S + + T + ++ + Sbjct: 527 YIQDGKIRLVSNNGEANAVDIELSAFRLTDELGQISTPN--------LAFGTLQEAIGQS 578 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 +S+ GV ++ + + +A + + P + + Sbjct: 579 ASSDFVVYDSLGVPINVRVSATLESRTDQATIYRWYADSPDNSVS-GSTDITVGTGLIQF 637 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 D + Q + V+ + S+ + N Sbjct: 638 DGNGNFVTATEETISINRQGLPSVSPMQFEMDFSLVSGLATDEATLAATQQDGSEPGVLN 697 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 + + + + +++ +A L AR + E + Sbjct: 698 SFIVGEDGTIRGVFSNGISRDLGQLQLARFANPAGLE--ARGLNLYAEGVNTGLPVTGQP 755 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ ++L L+ Y ++++I T +++ LL + Sbjct: 756 GENGIGTVIGGALELSNTDIGKDLVELVLASTQYRGNSRVITTTQQLIDELLNLRR 811 >gi|319403961|emb|CBI77549.1| Flagellar basal-body rod protein flgG [Bartonella rochalimae ATCC BAA-1498] gi|319406976|emb|CBI80613.1| Flagellar basal-body rod protein flgG [Bartonella sp. 1-1C] Length = 264 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 2/168 (1%) Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + A + + + + + + + Q + L Sbjct: 90 QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIVTLEGNLVQPVITIPIGSK 149 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 NV D + V L N + E S + Sbjct: 150 NVTVSPDGTVYYQTDTDPNAVEAGRFRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + I ++ V+ +E++ LI ++SY +++K+I +D+M Sbjct: 208 PKEDGYGSIMQAMLEASNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/255 (7%), Positives = 46/255 (18%), Gaps = 41/255 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I N+ N + + R Sbjct: 5 SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAVI 64 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ N +A+ + +++ N Sbjct: 65 PEGAMIGMGVRTAAVRTIN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S L + + I + V T + + Sbjct: 116 YTRSGAFNLSETGQIVTLEGNLVQPVITIPIGSKNVTVSPDGTVYYQTDTDPNAVEAGRF 175 Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ++ + E N D + + S + + + Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYGSIMQAMLEASNVDPVKEMTEL 235 Query: 214 NNDMVVYTSDGTTLF 228 Y + + Sbjct: 236 IAAQRSYEMNSKVIQ 250 >gi|167576664|ref|ZP_02369538.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] Length = 258 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 S +A LL N ++E S + VF I + Sbjct: 160 ASSPSEVGQLQLANFVNPAGLLALGDNL--YMETVASGPPNEGEAGTDVFGKIKQGALEG 217 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + EE+ +I +++Y ++ K++ D MLQ L + + Sbjct: 218 SNVQVVEEMVDMIAAQRTYEMNTKVLSAADNMLQHLSQAAR 258 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/139 (7%), Positives = 31/139 (22%), Gaps = 27/139 (19%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ISPE 48 ++ + ++ N+ N + + R + SP Sbjct: 1 MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60 Query: 49 NVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + + D + ++ + F + + Sbjct: 61 GIQMGSGTRIVGTQKVFTDGSVQTTGRSLDVAVTGKGFLQVL------MANGETGYTRAG 114 Query: 106 KLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 QLSINAEGLLVNAQGLPLQ 133 >gi|157165544|ref|YP_001467096.1| flagellar basal body rod protein FlgG [Campylobacter concisus 13826] gi|112799947|gb|EAT97291.1| flagellar basal-body rod protein FlgG [Campylobacter concisus 13826] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 58/189 (30%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + ++ + ++ + F + D + + + N ++ + Sbjct: 76 AINKIFSQGYFKETSNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDANGTIVNSDGYQ 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + ++ +A L N +L Sbjct: 136 LIPQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIELANFINPAGLHSMGDN--NYL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + S + + I + + V L EE++ LI +++Y ++K I +D M Sbjct: 194 QTSASGDVVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLITGQRAYEANSKAITTSDSM 253 Query: 472 LQTLLEGVK 480 L+ + + Sbjct: 254 LEIVNGLKR 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 35/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A Q NI N + Y + T Sbjct: 1 MMRSLYTAATGMIAEQTQIDVTSHNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + V NK S+ + F ++ + Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQIQ------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N L + A + T + D +I Sbjct: 115 TRNGAFKLDANGTIVNSDGYQLIPQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIE 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|297616912|ref|YP_003702071.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] gi|297144749|gb|ADI01506.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] Length = 261 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 11/146 (7%), Positives = 25/146 (17%), Gaps = 30/146 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + +I NI N + Y + Sbjct: 1 MLRALYTSSTGMFAQQLNIDNIAHNIANVNTTGYKKSRVEFQDLIYQMLRRPVANDTTVQ 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V ++ L + + Q+F ++ Sbjct: 61 PSGLWVGLGVKPSATQTI---FSQGNLTPTDNPLDVAIQGQAFFRVQS-----PTNEEYL 112 Query: 101 THYISKLRDSLESYSKNLSEDILGKT 126 + E + Sbjct: 113 YTRDGSFKLDSEGNLVTTDGYYVVGV 138 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 51/211 (24%), Gaps = 10/211 (4%) Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + + + + + P G + Sbjct: 53 VANDTTVQPSGLWVGLGVKPSATQTIFSQGNLTPTDNPLDVAIQGQAFFRVQSPTNEEYL 112 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP------- 390 + ++ + + + GY I K D Sbjct: 113 YTRDGSFKLDSEGNLVTTDGYYVVGVDTIDPEGYDVTIAPDGTVTYKMPGQDEPVEAGQV 172 Query: 391 -VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +A L + N + S + Y + + EE+ Sbjct: 173 ELAKFTNPAGLEKIGGNL--YRPTASSGEAIDWDPEADTTVSLHAGYLEAANIQIVEEMV 230 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y I++K+I D+ML + Sbjct: 231 NLITAQRAYEINSKVIQSADEMLGMAANLRR 261 >gi|294013088|ref|YP_003546548.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] gi|292676418|dbj|BAI97936.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 4/178 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + ++ D + + + S Sbjct: 81 INAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEGVVVTSDGLPLIPQ 140 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 G ++ +A L N + E Sbjct: 141 ITVPEGATSVTIGNDGTVSATLQGQTEPTQLGQIELASFMNPGGLTSVGGNLL--KESAA 198 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + + + Y T VN+ EEL +I+ +++Y +++K+I TD+MLQ Sbjct: 199 SGTPQVGVAGLDGRGVVRAGYLETSNVNVVEELVDMIETQRAYEVNSKMIKATDEMLQ 256 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/183 (6%), Positives = 35/183 (19%), Gaps = 33/183 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 A + A+ + + + I N+ N + + R Sbjct: 2 TNAALHVARTGLDAQNTKMRVIANNLANVNTTGFKRDRADFETLAYQQIVAAGANSDSEN 61 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + N L+ + + + +++ + Sbjct: 62 KFATGLNLGSGVALQGTSKIN---AQGTLNQTGNTLDMAIEGSGYFQVQQ------PDGS 112 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E L + ++ + Sbjct: 113 IAYTRAGNFTTTAEGVVVTSDGLPLIPQITVPEGATSVTIGNDGTVSATLQGQTEPTQLG 172 Query: 159 EIS 161 +I Sbjct: 173 QIE 175 >gi|296127366|ref|YP_003634618.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] gi|296019182|gb|ADG72419.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] Length = 264 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 31/71 (43%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S F I + + V + +E+ +I +++Y +++K + +D Sbjct: 194 YKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDMIVAQRAYEMNSKAVQTSD 253 Query: 470 KMLQTLLEGVK 480 +L T++ + Sbjct: 254 NLLATVVNLKR 264 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 34/159 (21%), Gaps = 33/159 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + N + +I N+ N + Y + Sbjct: 1 MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + V + + L A + + + F + + Sbjct: 61 VRPVGLQTGLGVKSASTQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + L ++ +V+ Sbjct: 112 VSYTRDGSFKIDANGQMVTSNGYRLVPEIVFPENFLVEQ 150 >gi|289666050|ref|ZP_06487631.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670510|ref|ZP_06491585.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 261 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G A Q+ + ++ + ++ A + F + D Sbjct: 52 PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + I Q +N + G + ++ + + + Sbjct: 112 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N ++E S + + VN EE Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +I+ +++Y ++ K I TD ML L V Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T S R L + S Sbjct: 61 QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILG 124 + + + S L Sbjct: 118 GTFQINAQGQLVTNSGYPLQ 137 >gi|167567752|ref|ZP_02360668.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis EO147] gi|167574703|ref|ZP_02367577.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis C6786] Length = 258 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 S +A LL N ++E S + F I + Sbjct: 160 ASELTEVGQVQLADFVNPAGLLSIGDNL--YMETVASGPPNEGDPGTDAFGKIKQGSLEA 217 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + +E+ +I +++Y ++ K++ D MLQ L + + Sbjct: 218 SNVKVVDEMVEMIAAQRTYEMNTKVLSAADSMLQYLAQAAR 258 >gi|329849714|ref|ZP_08264560.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] gi|328841625|gb|EGF91195.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] Length = 263 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 61/189 (32%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + R++ + + + + + + ++ + + +L Sbjct: 76 SVYRIMQQGSMTLTQNQYDVAIEGKGYFQILMPSGETAYTRAGNFSVDDQGRLVTEDGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + +V + A L N +L Sbjct: 136 VQPSVTIPQDAIDVSISKTGQIQATQQGQTAPTTVGQLQTATFFNEAGLDAIGDNL--FL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + ++ V F + + Y+ V+ E++ LI +++Y +++K+I D+M Sbjct: 194 ESGASGAPNVSTPGDVGFGTLLQGYTEASNVDAVGEITALIVAQRAYEMNSKVITTADQM 253 Query: 472 LQTLLEGVK 480 LQT + + Sbjct: 254 LQTASQIAR 262 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 7/172 (4%), Positives = 30/172 (17%), Gaps = 34/172 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A I NI N + + ++ Sbjct: 3 ALRTATTGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNIERMGSQSSDAGTVV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + + Sbjct: 63 PTGIQVGAGVKAGSVYRIMQQ---GSMTLTQNQYDVAIEGKGYFQIL------MPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + ++ +V + + + + + + + Sbjct: 114 YTRAGNFSVDDQGRLVTEDGYLVQPSVTIPQDAIDVSISKTGQIQATQQGQT 165 >gi|148980300|ref|ZP_01815987.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] gi|145961319|gb|EDK26629.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] Length = 250 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 2/91 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L N ++E S + + + V + Sbjct: 158 DLGQITIVKFMNPAGLSAQGGNL--FVETEGSGEAVELVAGTEGSGQLKQGALEGSNVQV 215 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 EE+ +I +++Y +S K++ D+MLQ + Sbjct: 216 VEEMVDMIATQRAYEMSAKMVSAADEMLQYI 246 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 16/193 (8%), Positives = 39/193 (20%), Gaps = 27/193 (13%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------------VVT 54 + +I N+ N + + R + +V Sbjct: 1 MAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELNEHPTGIQLGNG 60 Query: 55 QRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 R + + L F ++ + + + + Sbjct: 61 VRVVGTEKVFTQGNIQNTNQQFDLAILGDGFFQIEN------SDGELLYTRNGQFQTNSD 114 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 N L V+ E + + I + E +I+ ++ Sbjct: 115 GQLVNTQGYPLIPEVVIPPEATLVSITADGVVSATIPGQVNPEDLGQITIVKFMNPAGLS 174 Query: 173 VNDAIKFKTASKH 185 F Sbjct: 175 AQGGNLFVETEGS 187 >gi|85706167|ref|ZP_01037262.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] gi|85669331|gb|EAQ24197.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] Length = 261 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 8/206 (3%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D V QL R S + + I Sbjct: 51 AGTINATDGTVLPTGVQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEVTLPSG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH------YCDSFNKNF 386 + T + ++ + G + ++ ++ + Sbjct: 111 QAAYTRDGALKRSADGIIVNSEGFPVAPEITIPEDARSITINAEGEVFAFFQDNAEAQQL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +AG + L N ++E S ++ Q + + Y V+ Sbjct: 171 GQLDLAGFSNPKGLEAIGSNL--FVETEASGPANVTTAGQDGLGTLRQGYLEDSSVDPVR 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E++ LI+ ++ Y ++ K+I D+ML Sbjct: 229 EITELIEAQRGYELNAKVITAADQML 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 35/172 (20%), Gaps = 28/172 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + A + +I N+ N Y R Sbjct: 3 ILKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINATDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L + + + + + Sbjct: 63 PTGVQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEV------TLPSGQAAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 L+ S + N + + + N + +A+ + Sbjct: 117 DGALKRSADGIIVNSEGFPVAPEITIPEDARSITINAEGEVFAFFQDNAEAQ 168 >gi|85859196|ref|YP_461398.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85722287|gb|ABC77230.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 260 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I S + + + + D + N L+ V Sbjct: 80 IFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFKVNRDGVLCNTDGLQLIPEV 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S L + +A L RN S Sbjct: 140 SIPQDAVTFTLDSGGTWTAADENGNTLATGRIELAKFINPAGLSSIGRNLFEK--TEGSG 197 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + S+ + VN+ +E+ +I +++Y I++K I+ D ML + Sbjct: 198 EPLTGNPGEDGLGTTSQRFLEMSNVNVIDEMVKMIVGQRAYEINSKSIVTADNMLSMINN 257 Query: 478 GVK 480 K Sbjct: 258 LKK 260 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 32/155 (20%), Gaps = 14/155 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 ++ A + + N+ N + + + T S Sbjct: 1 MIRSLWTAATGMQAQQVEQDVVANNLANVNTVGFKKSRADFQDLMYQLSTKAGSETSSGN 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 +TV + Q + + D + + Sbjct: 61 QLTVGIEIGMGVKPVATQKIFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFK 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + N L V + V ++ Sbjct: 121 VNRDGVLCNTDGLQLIPEVSIPQDAVTFTLDSGGT 155 >gi|84624090|ref|YP_451462.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898985|ref|YP_201214.2| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae KACC10331] gi|166712060|ref|ZP_02243267.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzicola BLS256] gi|188576758|ref|YP_001913687.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576950|ref|YP_001913879.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368030|dbj|BAE69188.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521210|gb|ACD59155.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521402|gb|ACD59347.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 261 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 2/212 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 P G A Q+ + ++ + ++ A + F + D Sbjct: 52 PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + I Q +N + G + ++ + + + Sbjct: 112 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + L N ++E S + + VN EE Sbjct: 172 ALTLTDFINPSGLQSKGENL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 L +I+ +++Y ++ K I TD ML L V Sbjct: 230 LVSMIETQRAYEMNAKAISTTDAMLGYLNNNV 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A+ + + + I N+ N + + R Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T S R L + S Sbjct: 61 QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILG 124 + + + S L Sbjct: 118 GTFQINAQGQLVTNSGYPLQ 137 >gi|323165587|gb|EFZ51374.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G] Length = 143 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 27/135 (20%), Gaps = 33/135 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + L +++ Q F + + Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQVM------LPDGS 111 Query: 99 SPTHYISKLRDSLES 113 S + Sbjct: 112 SAYTRDGSFQVDQNG 126 >gi|325109020|ref|YP_004270088.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324969288|gb|ADY60066.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 572 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 41/467 (8%), Positives = 112/467 (23%), Gaps = 25/467 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L + + N Q + NI NA + + V R + Sbjct: 1 MGLTSALTTSLNGLALNEQTIDVLGNNIANAGTNGFKASSVLFETQLARTLSVGSRPTTE 60 Query: 61 NMFDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 N + ++ + + N + Sbjct: 61 NGGTNPQQIGLGATSAAILTDFSQGSVTSSTSPSDLAIQGDGFFIVNGSNGNLYTRAGNF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS----AREVQKIRADADKEIELEISNL 163 S E + +D +V ++ + + I + + Sbjct: 121 NLSSEDSLVTPEGLRVQGYGVDEDFNLVTTQLADINIPLGDLVVAQQTRNVHIGGAMLST 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ +++ A+ LL + + + N + + + Sbjct: 181 GDLATQSSILRSVDSLTAAASSTFAADPASAATLLNSLYVEGSATPMFSNGDVVSFAPRE 240 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---- 279 G L + ++ S +T + + I +G P+ ++ A QI Sbjct: 241 GGRLLDPQTLTVDATTSLSDLMTLMGDTLGIVSGGDVPQEGGVDPQVRLNAAGQIEVIGN 300 Query: 280 ----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + V + + + + A ++ + L ++ ++ Sbjct: 301 RGEVNDVSITLGDMIVNNSVTGATTVDLPFNKAQSANGESSITDFVVFDSLGQEVNVKMT 360 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + ++ + S + + + I Sbjct: 361 TYMEGRDASSTTFRYILESVDDSDSDTIVGTGTFTFDGEGVITNGAVQQFSIDRNNTAAV 420 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + + G + + L + +S + GV Sbjct: 421 SPMQISIDFSKLTGISTASAGSAITLQHQDGSNPGTLSRFVIDESGV 467 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 36/393 (9%), Positives = 91/393 (23%), Gaps = 11/393 (2%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + D +S + L + S E ++ V Sbjct: 180 TGDLATQSSILRSVDSLTAAASSTFAADPASAATLLNSLYVEGSATPMFSNGDVVSFAPR 239 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + ++ + + S ++ D +++ I I Sbjct: 240 EGGRLLDPQTLTVDATTSLSDLMTLMGDTLGIVSGGDVPQEGGVD-PQVRLNAAGQIEVI 298 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 V + G + + +N V + Sbjct: 299 GNRGEVNDVSITLGDMIVNNSV-TGATTVDLPFNKAQSANGESSITDFVVFDSLGQEVNV 357 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN-------VPGLFIADGI 323 K+ ++ RD+ F+ L+ + + + E + Sbjct: 358 KMTTYMEGRDASSTTFRYILESVDDSDSDTIVGTGTFTFDGEGVITNGAVQQFSIDRNNT 417 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + + + S + + + + + Sbjct: 418 AAVSPMQISIDFSKLTGISTASAGSAITLQHQDGSNPGTLSRFVIDESGVINGIFDNGII 477 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + +A + LLE + E S + L I + Sbjct: 478 RTLGQVVLARFSNPQGLLE--AGGTNFQEGVSSGTPFLVTPGNFGAGTIRAGAIELSNTD 535 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + L LI +Y + ++I +++ LL Sbjct: 536 IGRNLVDLIVASTNYRGNARVIDSVQQLVDELL 568 >gi|296274021|ref|YP_003656652.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098195|gb|ADG94145.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 783 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/400 (7%), Positives = 88/400 (22%), Gaps = 12/400 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ + + + + NI N + Y + Sbjct: 1 MIGALWTGISGLSAQQKALDNESHNIANVNTIGYKASRISFADQMYQDKIGKGAKVQDAE 60 Query: 62 --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + A F A+ + + R ++ Sbjct: 61 KIYTPSGTKSTGVAYDMALKDHGFFAVSNK--TSTGTSETYYTRAGNFRMGDNGTLQDAG 118 Query: 120 EDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF---LSELTVVN 174 + + + A+++V +I + + + +++ VN Sbjct: 119 GNEVQGWAMSPITADDIVSTNANVNVFTNDYSNLIATDIIKHGTYIESYSAKMTDFDQVN 178 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 S + + + + + + + + + Sbjct: 179 KGDDVSVYSGYGIKSKASKENDVKELVKNYKDALSNYNKSPGASSQEAVAQVSQINFLGT 238 Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSS--NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++ + TV + +PI ++ V ++ + I+A + ++ Sbjct: 239 EITKEKSKLTVYIDGSPISVEYQVRAARKSDDGTTDLTSIEASQIATYKALADEISKHTG 298 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 I + S K +K I + Sbjct: 299 YRAYTITDENIDGKTETGSAIDSFESFDTFTKSTKDKDVLRGMIQIEGMIPGKEFKVTDP 358 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 S S ++ N + D +A Sbjct: 359 SEDSGSGSPVFGSVNGTTSRTVAKEGIGLGGLVSARDALA 398 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 46/360 (12%), Positives = 99/360 (27%), Gaps = 3/360 (0%) Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 K + + V I ++ + N ++ + L + + + Sbjct: 427 SAYDKDLGKTINFGSSINVSPTTNVDTIISNLTSGTSPAVENFNKYFTALNINGNLVIEA 486 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + L + + +N TS + + + Sbjct: 487 KEYDIEFSSELFADSQTYVASASGSSYNFSGQNAILANSQTSYTIEIPQITLSNGQTIPA 546 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 + + + ++P +D N A K A ++ I N + G+ Sbjct: 547 ITASGGTINSPADLDIFKGKLNDIFANQKTTGGAPAKMPYKADIINGNLVITRVTGASGA 606 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 + P + + G + + E Q + S +++ Sbjct: 607 PAANFPASLTINKIAGGIDKNAVASGRKGAGGEFLEIKTTLDQTSAQNSLQLRLDTLNIS 666 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 LI D VA N LL N + S Sbjct: 667 DSPFGDFSVDKTGLITMQQDGAKFIIGQVSVALFNNERGLLAVGDNLLKK--TTESGEPT 724 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ + + I+ G NL E L L+ ++++ + K I D +L TL++ + Sbjct: 725 YNINND-RTSEIAGGNLELSGANLSESLVNLMVFQRAFEANAKSITTADALLTTLIQLKR 783 >gi|229825258|ref|ZP_04451327.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] gi|229790630|gb|EEP26744.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] Length = 274 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 3/122 (2%) Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ + + NF + N L + + E S Sbjct: 155 DISIDLSGNVLHRVDDKEAGTTKYDNFGKIALYQFNNPAGLNRSGGSL--YYETPASGEA 212 Query: 420 DLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I Y V+ +E+ +I +++Y +++K I +D+ML+ Sbjct: 213 RSEDTDAGLNKSLIKSGYLEGSNVSAADEMVNMIVTQRAYQLNSKAITASDEMLEQANNL 272 Query: 479 VK 480 + Sbjct: 273 RR 274 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 12/44 (27%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A + +I NI N + + + Sbjct: 1 MLRSLWSAASGMMAQQVNLDTISNNIANINTTGFKTQSMEFKSL 44 >gi|296274032|ref|YP_003656663.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] gi|296098206|gb|ADG94156.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] Length = 263 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 60/247 (24%), Gaps = 6/247 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + ++ + D + R+ + Sbjct: 11 GMYAQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDTRNPTGIDVGS 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YR 345 + + +P + + + + + + VN Sbjct: 71 GVRISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRVTLPNGETAYTRNGQFKVNSDGSIVN 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 N L + + G + + ++ L Sbjct: 131 GNGYLLDPEIVIPDNLTKINISNDGLITATDP-TTQEEQEVGQITLSDFVNPAGLAPMGE 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + + S ++ F ++ + + V L E+ LI +++Y ++K I Sbjct: 190 SL--FRATTASGDPIDANPTEEQFGNLRQGFVEMSNVKLVSEMVDLITAQRAYEANSKAI 247 Query: 466 MFTDKML 472 DK+L Sbjct: 248 QTADKLL 254 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/242 (7%), Positives = 63/242 (26%), Gaps = 28/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + Q NI N + + + Sbjct: 1 MIKGMYTAASGMYAQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDT 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + V + + + + L + + + F + + Sbjct: 61 RNPTGIDVGSGVRISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRV------TLPNGETAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE-EVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + N + +L ++ + N ++E+ Sbjct: 115 TRNGQFKVNSDGSIVNGNGYLLDPEIVIPDNLTKINISNDGLITATDPTTQEEQEVGQIT 174 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + L + +++ T + D D + + +S + + + + Sbjct: 175 LSDFVNPAGLAPMGESLFRATTASGDPIDANPTEEQFGNLRQGFVEMSNVKLVSEMVDLI 234 Query: 221 TS 222 T+ Sbjct: 235 TA 236 >gi|225619854|ref|YP_002721111.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] gi|225214673|gb|ACN83407.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] Length = 264 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 31/71 (43%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S F I + + V + +E+ +I +++Y +++K + +D Sbjct: 194 YKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDMIVAQRAYEMNSKAVQTSD 253 Query: 470 KMLQTLLEGVK 480 +L T++ + Sbjct: 254 NLLATVVNLKR 264 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 40/177 (22%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + N + +I N+ N + Y + Sbjct: 1 MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + V + L A + + + F + + Sbjct: 61 VTPVGLQTGLGVKSAATQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + L ++ +V+ + S + ++ + + Sbjct: 112 VSYTRDGSFKIDANGQLVTSNGYRLVPEIVFPENFLVEQISISREGIVSVKIGDEND 168 >gi|162147478|ref|YP_001601939.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|209545587|ref|YP_002277816.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|161786055|emb|CAP55637.1| putative flagellar basal-body rod protein flgG [Gluconacetobacter diazotrophicus PAl 5] gi|209533264|gb|ACI53201.1| flagellar basal-body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E+ A + + + + + + ++ + + + Sbjct: 88 EQTSNALDMAIQGPGYFQVTLPSGEYAYTRDGTFSLSEDGTIVTADGYPLSPNITLPNNA 147 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 N+ + + + L +N S L Sbjct: 148 ENITVDQSGQVQYTISGQTQAQVAGQIQLGIFQNENGLAAMGQNLFTQ--TTSSGDAILG 205 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + I + + VN+ E++ LI +++Y +++K+I +D+MLQTL Sbjct: 206 TPQAQGYGLIQQGFIEESSVNVVTEITDLITAQRAYEMNSKVITASDEMLQTLTNLK 262 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 22/262 (8%), Positives = 56/262 (21%), Gaps = 29/262 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + A + +I NI N Y RR Sbjct: 1 MMPSLDIAATGMQAQTTNVDTISNNIANMTTTGYKRRRAEFQDLIYQDVRRVGTMSSDTG 60 Query: 47 ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY- 96 V N+ L S+A+ + + + Sbjct: 61 DLVPAGAQIGLGVRTAGIYRINEQ---GTLEQTSNALDMAIQGPGYFQVTLPSGEYAYTR 117 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + + Y + + + ++ Q T + + Q A + Sbjct: 118 DGTFSLSEDGTIVTADGYPLSPNITLPNNAENITVDQSGQVQYTISGQTQAQVAGQIQLG 177 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + N + + + S + ++ I Sbjct: 178 IFQNENGLAAMGQNLFTQTTSSGDAILGTPQAQGYGLIQQGFIEESSVNVVTEITDLITA 237 Query: 217 MVVYTSDGTTLFETVPRDINFE 238 Y + + + Sbjct: 238 QRAYEMNSKVITASDEMLQTLT 259 >gi|254182892|ref|ZP_04889485.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254299684|ref|ZP_04967133.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|157809479|gb|EDO86649.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|184213426|gb|EDU10469.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + FI + + + + +I + Sbjct: 77 TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S +A LL N ++E Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + VF I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254 Query: 473 QTLLEGVK 480 Q L + + Sbjct: 255 QQLSQAAR 262 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 33/143 (23%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + ++ N+ N + + R + Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + + + D + ++ + + F + + Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137 >gi|319405401|emb|CBI79020.1| Flagellar basal-body rod protein flgG [Bartonella sp. AR 15-3] Length = 264 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 2/168 (1%) Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + A + + + + + + + Q + L Sbjct: 90 QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIITLDGNLVQPVVTIPIGSK 149 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 N+ + D + V L N + E S + Sbjct: 150 NITVSSDGTIYYQTDTDPNAVEAGRLRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + I ++ T V+ +E++ LI ++SY +++K+I +D+M Sbjct: 208 PKEDGYGSIMQAMLETSNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/255 (7%), Positives = 47/255 (18%), Gaps = 41/255 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I N+ N + + R Sbjct: 5 SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAII 64 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ N +A+ + +++ N Sbjct: 65 PEGAMIGMGVRTAAVRTVN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S L + + I + V + T + + Sbjct: 116 YTRSGAFNLSETGQIITLDGNLVQPVVTIPIGSKNITVSSDGTIYYQTDTDPNAVEAGRL 175 Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ++ + E N D + + S + + + Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYGSIMQAMLETSNVDPVKEMTEL 235 Query: 214 NNDMVVYTSDGTTLF 228 Y + + Sbjct: 236 IAAQRSYEMNSKVIQ 250 >gi|332298514|ref|YP_004440436.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] gi|332181617|gb|AEE17305.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] Length = 264 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 5/215 (2%) Query: 271 KIKALLQIRDSVVP-----IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 K+ D+V P ++ R++ + + + V F D Sbjct: 50 KLAGTPATEDTVTPVGIQMGTGVKVGATQRIITQGSLQNTGVDTDMAVVGEGFFRVQQYD 109 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + S + +N Q ++ + + + + Sbjct: 110 GSFAYTRDGSFKVDMNGQLVTSEGLRVMPEIILPEGYNLSTLTVSDDGRVTVKIAGNDDP 169 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 + + A S + N S + + V++ Sbjct: 170 LTVGQLELYRFPNAVGLEATGSNLFKVTNASGAAIAGRPGFDGMGVTKHKFLEMSNVSVV 229 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ +I +++Y S+K I +D ML + + + Sbjct: 230 NEMVQMIVAQRAYEFSSKAIQTSDTMLSSAVNLKR 264 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 12/177 (6%), Positives = 37/177 (20%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N +I N+ N + Y ++ Sbjct: 1 MVRSLWTAATGMNGQQANIDAISNNLSNVNTTGYKQQRVEFEDLIYQNLKLAGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + + L + + F +++ + + Sbjct: 61 VTPVGIQMGTGVKVGATQRI---ITQGSLQNTGVDTDMAVVGEGFFRVQQ------YDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + +I + S ++ + + Sbjct: 112 FAYTRDGSFKVDMNGQLVTSEGLRVMPEIILPEGYNLSTLTVSDDGRVTVKIAGNDD 168 >gi|330946986|gb|EGH47794.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 80 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 W E S +I+ V+L EL LIK + +Y + K Sbjct: 6 AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKT 65 Query: 465 IMFTDKMLQTLLEG 478 I ++QT ++ Sbjct: 66 ISTQSTIMQTTIQM 79 >gi|332296516|ref|YP_004438439.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] gi|332179619|gb|AEE15308.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 3/184 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGS 356 I + + + D + ++ P S Sbjct: 79 IFTEGPLQQTGNQLDLAIQGDGFFQVTLPDGSTAYTRAGNFSLDSAGEIVTPEGYLLQPS 138 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + ++ + D ++ +A L N + S Sbjct: 139 IVVPTNAVSISVGKDGSVSAKMQDGTVQDLGTIQLARFINPSGLTSLGSNL--YQSTPAS 196 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 L + + V + EE+ LI E++Y K + D+ML Sbjct: 197 GDAILGTPGTQGIGWVEQGMLEMSNVQVVEEMVNLITAERAYESCAKGMTVCDQMLSDAN 256 Query: 477 EGVK 480 + Sbjct: 257 NVKQ 260 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/203 (7%), Positives = 44/203 (21%), Gaps = 27/203 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 A + + + I N+ N + + P Sbjct: 3 ALWTAASGMISQTTNVDVITNNLANVNTTGFKTARAEFEDLMYQEVRPAGATSASGNMLP 62 Query: 48 ENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + + + L + + F + ++ Sbjct: 63 TGLEIGLGSRPVATVRIFTEGPLQQTGNQLDLAIQGDGFFQV------TLPDGSTAYTRA 116 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +L +++ V + K++ +++ Sbjct: 117 GNFSLDSAGEIVTPEGYLLQPSIVVPTNAVSISVGKDGSVSAKMQDGTVQDLGTIQLARF 176 Query: 165 RFLSELTVVNDAIKFKTASKHDA 187 S LT + + T + DA Sbjct: 177 INPSGLTSLGSNLYQSTPASGDA 199 >gi|167909129|ref|ZP_02496220.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 112] Length = 262 Score = 66.2 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 61/183 (33%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D N + S Q ++ + Sbjct: 82 TQGSLQQTGNSKDVAINGPGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + + +A L N E S Sbjct: 142 IPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFA--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ + + Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 200 APNVSQPGLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 Query: 478 GVK 480 + Sbjct: 260 MSR 262 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 41/213 (19%), Gaps = 35/213 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGPGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + S + T+ NA + + Q +A + Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 L+I+ + T+S Sbjct: 172 ALQIATFINPAGLDAKGENLFAETTSSGAPNVS 204 >gi|295678056|ref|YP_003606580.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] gi|295437899|gb|ADG17069.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] Length = 262 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S Q ++ + Sbjct: 82 TQGNLQQTGNSKDVAINGAGFFQVQMPDGQTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + I S + +A L N E S Sbjct: 142 IPANATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFINPAGLDSKGENLFA--ETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/177 (6%), Positives = 31/177 (17%), Gaps = 33/177 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F ++ Sbjct: 61 ELPSGIQLGTGVQQVATERL---YTQGNLQQTGNSKDVAINGAGFFQVQ------MPDGQ 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + + S + + A + + ++ + Sbjct: 112 TAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPANATSLTIGSDGSVSITVAGSSNTQ 168 >gi|291276999|ref|YP_003516771.1| flagellar hook protein FlgE [Helicobacter mustelae 12198] gi|290964193|emb|CBG40039.1| Putative flagellar hook protein, FlgE [Helicobacter mustelae 12198] Length = 600 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 12/146 (8%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + S L+ K+ + ++ + ++ + + +A + + L + N Sbjct: 455 DSSLLKSESDGKKEGRLSGVSIDENGIIQLNFDNGVSTPMGRIGIAAFSNDQGLHKVGGN 514 Query: 407 SIGWLEKNR--------SDSHDLHMKSQV----VFNHISESYSNTVGVNLQEELSFLIKV 454 + S + L F + Y T ++ L+ LI + Sbjct: 515 LFELKQTTDNNGDNKILSGAPILGWDGDGDGRLKFGRVMHKYLETSNTDVTSALTNLILM 574 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ Y+++ K + D +++ + + Sbjct: 575 QRGYSMNAKALSTGDDLIKEAINLKR 600 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 34/155 (21%), Gaps = 22/155 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSE 58 + + + SI NI N + Y +V T S+ Sbjct: 1 MNNTILNSYSGIKTHQFGLDSISNNIANVNTPGYREHIPEFKTLLSRNIASVNGSTVSSD 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFE------------------ALKEMMSADDHYNNSP 100 + +A S+ G + +L + + Sbjct: 61 SNYGVSVSSNAISTKSGDYKRSDGDFDMAYEGKGWFIVGKNSKGSLSINEDGYEGNQQNY 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + Y N + + + + V Sbjct: 121 FTRDGSFSRDSDGYLVNAAGYYVYGLDLGKIKGNV 155 >gi|302872712|ref|YP_003841348.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] gi|302575571|gb|ADL43362.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] Length = 267 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + + K+ E +I + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQEGQIQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193 >gi|203288201|ref|YP_002223216.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201085421|gb|ACH94995.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 265 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L N + E S + + + V + Sbjct: 171 ELGQIEIARFVNPAGLNAIGNNI--FKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML K Sbjct: 229 AEEMVTMIVAQRAYEINSKAIHTSDNMLGIANNLKK 264 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 9/170 (5%), Positives = 33/170 (19%), Gaps = 27/170 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + +I N+ N + + + Sbjct: 1 MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATEDT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + ++ L + F + Sbjct: 61 VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVL------LSDGTYGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + + IL + E + + S + ++ + Sbjct: 115 TRDGSFKIDANGHLVTNQGYILLPEISFPEEYIKNSIAISQEGIISVKVN 164 >gi|304392506|ref|ZP_07374446.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] gi|303295136|gb|EFL89496.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] Length = 262 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 15/253 (5%), Positives = 43/253 (16%), Gaps = 29/253 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A + I NI N + + R T Sbjct: 3 ALSIAATGMQAQQKNLDVIAHNIANINTTGFKRGRVEFTDLIYDTERLNGIPNRANSANV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS- 99 V + R+ + + + + ++ + + Sbjct: 63 PEGAHFGLGVRTASVRNVH---LQGQVAQTGNRFDLALTGNGWFQIENAAGETVYQRSGA 119 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + + T F ++ Sbjct: 120 FNTNGAGELVTQDGLRVQPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQLSLATFA 179 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 L + + + S + + I + Sbjct: 180 NDVGLTPLGDNLFAQSDASGEPQVGTPGDPGYATIRQGYLESSNVESVKEITQLIAAQRG 239 Query: 220 YTSDGTTLFETVP 232 Y + + Sbjct: 240 YEMNSKVIQAADD 252 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 2/119 (1%) Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 G ++ A + + +A +V L N Sbjct: 137 QPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQLSLATFANDVGLTPLGDNLFAQ-- 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + + I + Y + V +E++ LI ++ Y +++K+I D M Sbjct: 195 SDASGEPQVGTPGDPGYATIRQGYLESSNVESVKEITQLIAAQRGYEMNSKVIQAADDM 253 >gi|224373466|ref|YP_002607838.1| flagellar basal body and hook protein [Nautilia profundicola AmH] gi|223589855|gb|ACM93591.1| flagellar basal body and hook protein [Nautilia profundicola AmH] Length = 642 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/317 (8%), Positives = 78/317 (24%), Gaps = 12/317 (3%) Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + + + + D+ + + S + + N ++ ++ Sbjct: 336 STIQDFDNIIQNLANSAYPDATNVYLDDEGRISIDNNSFKTINAYTLNTENSNDLFMNNL 395 Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L + + + + T T I+ K V Sbjct: 396 GRLGNEIYAGTSAKSYDFLTNTQSFGGKIIEANGQKDTISVTFTK-----------QKVL 444 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 Q + +L +E + + + + Sbjct: 445 NNQIVWNGEVSILDPDSNEISTQNFEMTFDSDGHLLSPTQITISSPQNITLNFNMTSYAK 504 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + ++ + + + + PV + L Sbjct: 505 TDLATSYSFTQNGVEEGFLKNYQIDQNGQIQALFSNGQMSVLGQIPVYHFQNDQGLESLG 564 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N + + I + V+ + ++ LI +++Y+ + K Sbjct: 565 GNLFRETANSNKAILYTDQNGNYISGSSIISNTLEASNVDFSQAMTELIVTQKAYSSAAK 624 Query: 464 LIMFTDKMLQTLLEGVK 480 + +D+M+Q ++ K Sbjct: 625 TVTTSDQMIQRAIDMKK 641 Score = 63.5 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 47/418 (11%), Positives = 103/418 (24%), Gaps = 23/418 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F + NI N + Y + + T+ + + Sbjct: 1 MTTSFYNGITGLKSFQYGIDIWGDNIANINTTGYKEQIPEFSTLFS-ETLNSDPVYSDIG 59 Query: 63 FDKVLHAHSSAIGQQRLLQ-----SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 L + + + Q L+ E A YN++ + Y + Sbjct: 60 MGSKLSSTAINLDQGSLINTDNPFDVSINGEGWLAVKRYNDTYYTRTGSFTRDAQGYLVD 119 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + D L +N + + R + + IS + +A Sbjct: 120 DNGDYLLVANANNLIQNADGSYSVNRSINTDNLISQNTQMSPISLPNNVILPAIATTEAT 179 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 + D I ++ +Y+ DG L + F Sbjct: 180 LTSNLNDSDV----------------ITTTKPSTTESDFSALYSKDGADLKVRDGDSLVF 223 Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL-DEMARV 296 N T + + ++ AV + + D + ++ + Sbjct: 224 GFGNPATYQNNIISTELCITDDEADGKDAVYNFTLNGINFNIDMPDGSTKEEIQHALKDA 283 Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + I ++ T PQ S ++D + Sbjct: 284 FDQAGIINEITDNGIKISDPNHIILTSENELLPNIAAAKLTYRSEPQNSYEFSTIQDFDN 343 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + + A L + S + N A + N++G L Sbjct: 344 IIQNLANSAYPDATNVYLDDEGRISIDNNSFKTINAYTLNTENSNDLFMNNLGRLGNE 401 >gi|319781681|ref|YP_004141157.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167569|gb|ADV11107.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 262 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 38/181 (20%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 A N I NI N + Y R + V Sbjct: 3 ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + L + ++ + + ++ + Sbjct: 63 PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDLALTGRGWFQIE------GADGGTLYSR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L + + + + + V N + + +I D + ++ Sbjct: 117 AGALNTNATGQLVTVDGAAVIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIA 176 Query: 164 R 164 Sbjct: 177 N 177 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +N +A L N + E S ++ + F I + Y V+ Sbjct: 168 QNLGQLQIANFANEAGLAPLGDNL--FQETTASGPANVGVPGDPGFATIQQGYLEASNVD 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKM 471 +E++ LI +++Y +++K+I D M Sbjct: 226 PVKEITELISAQRAYEMNSKVIQAADDM 253 >gi|187926952|ref|YP_001893297.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|241665281|ref|YP_002983640.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|187728706|gb|ACD29870.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|240867308|gb|ACS64968.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 260 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 4/178 (2%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + ++ ++ D L + VN Q + S Sbjct: 82 TQGNLQQTGNATDVAINGNGFFQVQMPDGTLAYTRDGSFQVNAQGQLVTSSGYPIQPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDS--FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 G ++ N +A L N E S Sbjct: 142 VPQNATSFSVGKDGVVTVTTPGSVNNTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L Sbjct: 200 TANLANPGSNGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKSVQTSDQMLEKL 257 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/258 (8%), Positives = 56/258 (21%), Gaps = 35/258 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ ++ + Q I N+ N + + R + Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 47 --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + L +A F ++ Sbjct: 61 TLPSGMQIGTGVRIVATERLH---TQGNLQQTGNATDVAINGNGFFQVQ------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + S + TV NA + + + Sbjct: 112 LAYTRDGSFQVNAQGQLVTSSGYPIQPAITVPQNATSFSVGKDGVVTVTTPGSVNNTQVG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 +++N ++ + AS V + + + + V Sbjct: 172 TFQLANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGVLNQNYVETSNVNVVEEMV 231 Query: 217 MVVYTSDGTTLFETVPRD 234 ++ T + + Sbjct: 232 NMIQTQRAYEINSKSVQT 249 >gi|149911700|ref|ZP_01900308.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] gi|149805230|gb|EDM65247.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] Length = 262 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 74/257 (28%), Gaps = 3/257 (1%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 M T E +I+ N ++ Q P G+ Sbjct: 1 MNPALWISKTGLEAQQANISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNT 60 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ ++ ++ + + + F + D + Sbjct: 61 KLPSGLMVGSGARVVATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRNGQF 120 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395 T+ + S + ++ ++ + N+ ++ Sbjct: 121 TLNDEGIIVTPGSGYPLQPQIQIPADAQTITVSEDGEVSVSLPGQTNNQTVGQINISDFV 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L +N +++ S + S + + T VN+ EEL LI+ + Sbjct: 181 NPGGLQPIGQNM--YIQTGASGDPVQGLPSNEGLGKLVQGAIETSNVNVTEELVNLIESQ 238 Query: 456 QSYNISNKLIMFTDKML 472 + Y +++K+I D+ML Sbjct: 239 RVYEMNSKVISAVDEML 255 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 12/203 (5%), Positives = 44/203 (21%), Gaps = 25/203 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ ++I N+ NA + + + Sbjct: 1 MNPALWISKTGLEAQQANISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + V + + + H+ + + L + + + + Sbjct: 61 KLPSGLMVGSGARV---VATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRN 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT----SAREVQKIRADADKEIELEI 160 + + E + I + + + + + Sbjct: 118 GQFTLNDEGIIVTPGSGYPLQPQIQIPADAQTITVSEDGEVSVSLPGQTNNQTVGQINIS 177 Query: 161 SNLRRFLSELTVVNDAIKFKTAS 183 + + N I+ + Sbjct: 178 DFVNPGGLQPIGQNMYIQTGASG 200 >gi|91976146|ref|YP_568805.1| hypothetical protein RPD_1667 [Rhodopseudomonas palustris BisB5] gi|91682602|gb|ABE38904.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB5] Length = 610 Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 54/466 (11%), Positives = 106/466 (22%), Gaps = 25/466 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53 M + + S +I NI N+ + R DT + + V Sbjct: 1 MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTAFLDLIPQAGTNAQVAGSV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRD 109 T S N + + S + + F A+++ S D+ + Sbjct: 61 TSESRLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID ++ ++ + +IS S Sbjct: 121 DKNGYLVNGAGYYLQGVAIDP--TTGNPVGSTPTVLKFQNDFLPSQATTKISYRANLASY 178 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 + + DF V + + N TL + Sbjct: 179 PLTTKNDKSVPGSELLRPADFTSNPQVAGTAPPPFADNTKVGLQKNSKAGTAITAATLLK 238 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 + + T T ++ A D N Sbjct: 239 GAAATNSASADFTITDTITVGTGG-SAKTIAFYDSGAGGSAGAAPNTTYLDLATATVGNL 297 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + G G+ + + + Sbjct: 298 LGAIDTANGNGGTPSSVATGAITLHTGIAADLTLTSTSAGFASLGLTSPVSVARLGGGSV 357 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK----NFIFDPVAGINTNVTLLEYAR 405 + + G + N I G+ N T + + Sbjct: 358 GTGQVTGAENQTFLDESISGGATTAYDGSGAPVNVQFRWAKIDSAALGVGHNDTWNLFYQ 417 Query: 406 -------NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + W N + S + + V ++ S GV+L Sbjct: 418 VNPGATGSQVAWQNVNTNFSFNSTGQMNPVIGQLALSNLTVSGVSL 463 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 47/398 (11%), Positives = 102/398 (25%), Gaps = 13/398 (3%) Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + + + T + + + TV F S Sbjct: 220 GLQKNSKAGTAITAATLLKGAAATNSASADFTITDTITVGTGGSAKTIAFYDSGAGGSAG 279 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 A ++L + + L + N ++ A L S G + Sbjct: 280 AAPNTTYLDLATATVGNLLGAIDTANGNGGTPSSVATGAITLHTGIAADLTLTSTSAGFA 339 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 ++ + V G+ V N ++ + G V+ A Sbjct: 340 SLGLTSPVSVARLGGGSVGTGQVTGAENQTFLDESISGGATTAYDGSGAPVNVQFRWAKI 399 Query: 269 K------GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 G +Q+ SF+ + + + Sbjct: 400 DSAALGVGHNDTWNLFYQVNPGATGSQVAWQNVNTNFSFNSTGQMNPVIGQLALSNLTVS 459 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 L N + + N + +++ ++ Y + Sbjct: 460 GVSLGNVTMSFGTGGLTQFSDTNGNVQVNQLQQDGYAAGQLTSVSVSNEGRVVGAYSNGR 519 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N + VA N L +++ IS S + Sbjct: 520 NIDLAEVSVATFNGANFLKRI-------DGGAFEVTNESGEALYGKGGSISGSSLESSNT 572 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +E + LI +Q+Y+ + K+I + M+Q LL ++ Sbjct: 573 DIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 610 >gi|90418392|ref|ZP_01226304.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] gi|90338064|gb|EAS51715.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] Length = 262 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 2/199 (1%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + +L + + I + + + + + Sbjct: 57 GGQGVVPEGAQLGLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQGPGGEILYTR 116 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + Q + L D V + + +A Sbjct: 117 DGAFNTNGDGQLVTLDGLLVDPAITMPANTSEVIVNESGQVFARVGGAADLEELGQLTLA 176 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 N L N + E S + + + + + Y V+ +E+S LI Sbjct: 177 TFANNAGLAAQGGNL--FRETIASGAPTAGVPGDEGYATLQQGYLEDSNVDPVKEISELI 234 Query: 453 KVEQSYNISNKLIMFTDKM 471 +++Y +++K+I D+M Sbjct: 235 SAQRAYEMNSKVISAADEM 253 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 37/172 (21%), Gaps = 28/172 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPENVT 51 A N I NI N + + R T + V Sbjct: 3 ALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFTDLLYQVERAQGVAARGGQGVV 62 Query: 52 VVTQR--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + L+ + + + + ++ Sbjct: 63 PEGAQLGLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQ------GPGGEILYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + L ++ + A N S + ++ AD E Sbjct: 117 DGAFNTNGDGQLVTLDGLLVDPAITMPANTSEVIVNESGQVFARVGGAADLE 168 >gi|42522134|ref|NP_967514.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] gi|39574665|emb|CAE78507.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] Length = 261 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/183 (9%), Positives = 35/183 (19%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L N A I NI N + R Sbjct: 1 MLKSLNTAATGMAAQQTNMDVIANNIANVSTAGFKRSRAEFEDLMYQTQKEPGTASGLNA 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP V V K+ + + Q F + + Sbjct: 61 YSPNGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVL------TADGETAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + L + A + + + +I Sbjct: 115 TRDGAFKKDPNGRLVDKNGNTLQPEITVPANVSGIEVAPTGEVRVITGLNDVPQTIGQID 174 Query: 162 NLR 164 + Sbjct: 175 VVN 177 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 18/199 (9%), Positives = 56/199 (28%), Gaps = 2/199 (1%) Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + V + + + G ++ + + F D + + + Sbjct: 64 NGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVLTADGETAYTRDGAFKKD 123 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N + + ++ + + + V Sbjct: 124 PNGRLVDKNGNTLQPEITVPANVSGIEVAPTGEVRVITGLNDVPQTIGQIDVVNFVNPAG 183 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L +N S ++++ + VN+ +E+ +I +++ Sbjct: 184 LKAMGKNLFTQ--TPSSGQAIASRPGLNGTGYLAQGQLESSNVNIVDEMVNMITAQRAME 241 Query: 460 ISNKLIMFTDKMLQTLLEG 478 ++K++ +D+MLQ + Sbjct: 242 TNSKVMQASDQMLQAINNL 260 >gi|319898637|ref|YP_004158730.1| flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] gi|319402601|emb|CBI76146.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] Length = 264 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 2/168 (1%) Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + A + + + + + + + Q + L Sbjct: 90 QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIITLDGNLVQPVITIPIGSK 149 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 NV D + V L N + E S + Sbjct: 150 NVTVSPDGTVYYQTDADPSAVEAGRLRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + I ++ + V+ +E++ LI ++SY +++K+I +D+M Sbjct: 208 PKDDGYGSIMQAMLESSNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/255 (7%), Positives = 47/255 (18%), Gaps = 41/255 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I N+ N + + R Sbjct: 5 SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGIPNMLNQAII 64 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ N +A+ + +++ N Sbjct: 65 PEGAMIGMGVRTAAVRTVN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S L + + I + V T + + + Sbjct: 116 YTRSGAFNLSETGQIITLDGNLVQPVITIPIGSKNVTVSPDGTVYYQTDADPSAVEAGRL 175 Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ++ + E N D + + S + + + Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKDDGYGSIMQAMLESSNVDPVKEMTEL 235 Query: 214 NNDMVVYTSDGTTLF 228 Y + + Sbjct: 236 IAAQRSYEMNSKVIQ 250 >gi|218507129|ref|ZP_03505007.1| flagellar basal body rod protein FlgG [Rhizobium etli Brasil 5] Length = 217 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 42 TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDGYEVLPGITIPTGS 101 Query: 365 VKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + +A L N + E S + Sbjct: 102 TELTISRSGEVSVKLPGATDTTVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVG 159 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 160 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 208 >gi|56551505|ref|YP_162344.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241761149|ref|ZP_04759238.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752888|ref|YP_003225781.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|4378856|gb|AAD19724.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543079|gb|AAV89233.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241374768|gb|EER64229.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552251|gb|ACV75197.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 263 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 58/187 (31%), Gaps = 2/187 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q R + + + + D + + + + Q ++ Sbjct: 74 QTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQDGQIVTDD 133 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + + L +N Sbjct: 134 GKPLIPNINIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFINPAGLQATGQNL- 192 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 ++E S + + Q +I + VN+ +EL +I+ +++Y +++K++ + Sbjct: 193 -YIETQSSGQPQIGLPQQDGMGYILQGELEQSNVNIVQELVDMIETQRAYEVNSKMVKAS 251 Query: 469 DKMLQTL 475 D+MLQ + Sbjct: 252 DEMLQYI 258 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/198 (7%), Positives = 41/198 (20%), Gaps = 18/198 (9%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM---- 62 A+ + + + I N+ N + + R + Sbjct: 6 LQVARTGLDAQNTRMRIIANNLANVNTTAFKRDRAAFETLAYQAERQPGAQSTNSYYYAT 65 Query: 63 -----------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + S + L + + S Sbjct: 66 GLTLGSGVQTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQ 125 Query: 112 ESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + L + + + T + ++Q + + Sbjct: 126 DGQIVTDDGKPLIPNINIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFINPAGL 185 Query: 169 ELTVVNDAIKFKTASKHD 186 + T N I+ +++ + Sbjct: 186 QATGQNLYIETQSSGQPQ 203 >gi|89069818|ref|ZP_01157153.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] gi|89044619|gb|EAR50735.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] Length = 261 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 8/210 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + D V QL R S ++ + I Sbjct: 52 GTINASDGTVLPTGVQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGR 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-- 391 T + + + G + ++ ++ + + + Sbjct: 112 PGYTRDGGLKRSGDGLIVTADGFPVAPEITIPRDALSISINPEGEVYAYFSDRVEAQLLG 171 Query: 392 ----AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 AG + L N ++E S ++ Q + + + V+ +E Sbjct: 172 QFDIAGFSNPRGLEAVGSNL--FVETEASGPANVTTPGQDGLGTLRQGFLEDSSVDAVKE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ LI+ ++ Y +++K+I D+ML ++ Sbjct: 230 VTDLIEAQRGYELNSKVISAADQMLGATVQ 259 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/245 (6%), Positives = 46/245 (18%), Gaps = 23/245 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQMMRPGTINASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102 P V + + + L + + + + + + Sbjct: 63 PTGVQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGRPGYTRDGGLKR 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L + + + I + + + + + V+ Sbjct: 123 SGDGLIVTADGFPVAPEITIPRDALSISINPEGEVYAYFSDRVEAQLLGQFDIAGFSNPR 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + V D L + S + + + Y Sbjct: 183 GLEAVGSNLFVETEASGPANVTTPGQDGLGTLRQGFLEDSSVDAVKEVTDLIEAQRGYEL 242 Query: 223 DGTTL 227 + + Sbjct: 243 NSKVI 247 >gi|257095357|ref|YP_003168998.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047881|gb|ACV37069.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 260 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 2/182 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 ++ A + F + D + S Q + + Sbjct: 81 FTQGSLQQTGNALDMAIDGAGFFQVLLPDGTTAYTRDGSFQKDNQGQIVTANGYPLQPAI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 V I + VA N L N +LE S Sbjct: 141 TIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQVATFVNNGGLQSVGENL--YLETASS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + ++Y VN+ +EL +I+ +++Y ++ K++ +D+ML L Sbjct: 199 GTATPNTPGTNGSGVVVQNYVEASNVNVAQELVLMIQTQRAYELNAKVVSTSDQMLARLT 258 Query: 477 EG 478 + Sbjct: 259 QL 260 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/211 (6%), Positives = 39/211 (18%), Gaps = 30/211 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A Q I N+ N + + + Sbjct: 1 MIRSLWTASTGLTAQQVQIDIIANNLANVSTNGFKQARGIFADLLYQTLRQPGAQSSQTT 60 Query: 57 SENKN---------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 L +A+ F + + Sbjct: 61 QIPDGLQIGLGVTPVSTGRIFTQGSLQQTGNALDMAIDGAGFFQVL------LPDGTTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT---SAREVQKIRADADKEIEL 158 + + + L + A+ + T + + A Sbjct: 115 TRDGSFQKDNQGQIVTANGYPLQPAITIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQ 174 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + N ++ ++ + Sbjct: 175 VATFVNNGGLQSVGENLYLETASSGTATPNT 205 >gi|149201611|ref|ZP_01878585.1| Flagellar distal rod protein [Roseovarius sp. TM1035] gi|149144659|gb|EDM32688.1| Flagellar distal rod protein [Roseovarius sp. TM1035] Length = 262 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L + +E S + + + + + T VN+ Sbjct: 170 EVGQLTLAQFANPRGLEPVGETFV--VESTASGAPVVGNPLEDGMGDLVQGALETSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 +EL +I+ +++Y I+++ I +D+M+ L Sbjct: 228 VQELVEMIEAQRAYEINSRSISASDEMMSYLAN 260 Score = 63.1 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 32/148 (21%), Gaps = 34/148 (22%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS V + A+ N + I N+ N + + R Sbjct: 1 MS-SNVMHVAKTGLNAQQARIQVISNNLANVNTTGFKRDRANFETLLYQTLRPAGAQTSE 59 Query: 44 -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 T V +V+ L +A+ + F + Sbjct: 60 ATEQTAPTTLGTGVRLVSTEKM---YTQGSLTTTDNALDLAIDGKGFFQVL------MPD 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILG 124 + + S ++ Sbjct: 111 GRIGYTRNGTFSQNADGVLTTSSGYVVQ 138 >gi|91204383|emb|CAJ70883.1| strongly similar to flagellar distal rod protein [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 2/172 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F D + S + + + Sbjct: 93 LDLAIQGKGFFQIQQSDGSIAYTRDGSFQLNSKGEVVTADGLPLSPSITITNATEISIGT 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 G + +N + L +N +LE S S + + + Sbjct: 153 DGTVYVKGSDPSGTLQNVGQIMLTMFPNPSGLDSLGKNL--YLETMASGSPIVTVAGEQG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + + V EL LI +++Y I+++ I +D+ML T+ + Sbjct: 211 TGEIYQGFLENSNVETVTELVSLITAQRAYEINSRAISASDEMLSTINSMAR 262 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 38/172 (22%), Gaps = 24/172 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 +L A ++ N+ N + + R Sbjct: 1 MLRALYTAATGMKAQQLFLDNVSNNLSNINTTGFKRSQVNFQDLLYSKRYIAGSESAQGF 60 Query: 47 --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-- 99 P + + +K + + F +++ + + + Sbjct: 61 EIPAGIQLGGGVRTISISKVFSQGNHVNTERELDLAIQGKGFFQIQQSDGSIAYTRDGSF 120 Query: 100 -PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + S +++ + I V + + +Q + Sbjct: 121 QLNSKGEVVTADGLPLSPSITITNATEISIGTDGTVYVKGSDPSGTLQNVGQ 172 >gi|312621332|ref|YP_004022945.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kronotskyensis 2002] gi|312201799|gb|ADQ45126.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kronotskyensis 2002] Length = 267 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/200 (9%), Positives = 47/200 (23%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E ++ S+ + + K+ E ++ + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIILPETAISSITIDETGRITYKDAEGQVQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193 >gi|258514026|ref|YP_003190248.1| hypothetical protein Dtox_0711 [Desulfotomaculum acetoxidans DSM 771] gi|257777731|gb|ACV61625.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 +++ + + + L+ +L+ +S Sbjct: 150 SISPSGQVTVINGAGMKEEIANISIYNFINPAGLIAQDNKL--YLQTEQSGEAAEGAPGT 207 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + ++ V+L +E+ LI+ +++Y I+ + I D M Sbjct: 208 DGYGSLRQGFTEMSNVDLIQEMVRLIEAQRAYEINARSIKTADDM 252 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 57/234 (24%), Gaps = 38/234 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ + N S NI N + Y T T Sbjct: 1 MIKTLGIGASALNANQTYIDSAANNIANVNTDEYKAERTRFTDLLYNYYYRGTTYPAPTV 60 Query: 45 ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 S V + + + + S+++ F + Sbjct: 61 DEKATESSGNGVRIGEVKKVFEP---GTIKETSNSMDLAIDGAGFIKVI------SPDGE 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L+ + + ++ + + + + I E + + + +V I KE Sbjct: 112 ELFSRGGVLKVNSDGVIEDAAGN-IIEPEIQLPEGLQNFSISPSGQVTVINGAGMKEEIA 170 Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFL--DQRDVLLQKISEIIGIS 208 IS + N S A D L Q +E+ + Sbjct: 171 NISIYNFINPAGLIAQDNKLYLQTEQSGEAAEGAPGTDGYGSLRQGFTEMSNVD 224 >gi|92116886|ref|YP_576615.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] gi|91799780|gb|ABE62155.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] Length = 615 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/367 (8%), Positives = 94/367 (25%), Gaps = 11/367 (2%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + + ++ +T + + I + + Sbjct: 260 AAGDTITVNTQTIEFYDSGAGGSAGSTPNTTYLDLATSTVGNLLSSIGTITGQAPTIDAS 319 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 AI T + +D I+ V ++ T+F+ Sbjct: 320 TGAITLHTGTANDLTISSASSGWTSMGFGATTNIARGGGGTPGAGVVIANDQTIFQQE-- 377 Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + + + ++ S + + + Sbjct: 378 --SISGGAVTVYDATGTAVNLQLRWAKTDSASLGAGHADTWNMFYQANPNATGTQAAWIN 435 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + ++ ++ G + L N + + N + Sbjct: 436 VGTNFTFGTNGQLSSPVGSSITIPSVSVGTQSLGNLTLNLGTGGLTQYASSGGNATVNAI 495 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + ++ + + N + ++ N L + + Sbjct: 496 NQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAKVSLSHFNGTNYLKAL--DGGAYAVT 553 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S HI+ S ++ +E + LI +Q+Y+ + K+I + M+Q Sbjct: 554 DESGPAIAGAA-----GHINGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQ 608 Query: 474 TLLEGVK 480 LL ++ Sbjct: 609 DLLNVLR 615 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 34/459 (7%), Positives = 87/459 (18%), Gaps = 34/459 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54 M + N + S +I NI NA Y T + +P Sbjct: 1 MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQVAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108 + + A + F ++ D+ + + Sbjct: 61 VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRVDNQPQFSGVTYYTRRGDFQ 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + N + L +D + + + + + L Sbjct: 121 VNANGNLVNSAGYYLMGVPVD---------PKTGNPLGNVPQVLQFQNNFVPAQATSTLQ 171 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + ++ A + + + T+ G+ Sbjct: 172 YAANLPAVPTTLSSPTATAGTITAAGGLNPSDFTNNFNPLVVGTPAPPRTDNTTSGSPAM 231 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIR 279 + + T+ SN + + + Sbjct: 232 NQQTPPVAITSATKLSGTAPSNSLPTGFAAGDTITVNTQTIEFYDSGAGGSAGSTPNTTY 291 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + L + G D G G I + Sbjct: 292 LDLATSTVGNLLSSIGTITGQAPTIDASTGAITLHTGTANDLTISSASSGWTSMGFGATT 351 Query: 340 VNP----QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + ++ ++ + + Y G Sbjct: 352 NIARGGGGTPGAGVVIANDQTIFQQESISGGAVTVYDATGTAVNLQLRWAKTDSASLGAG 411 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434 T + + + + + + +S Sbjct: 412 HADTWNMFYQANPNATGTQAAWINVGTNFTFGTNGQLSS 450 >gi|83721615|ref|YP_440803.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167579490|ref|ZP_02372364.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] gi|167617587|ref|ZP_02386218.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257140546|ref|ZP_05588808.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83655440|gb|ABC39503.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 54/176 (30%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + D + N Q + S Sbjct: 87 TQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNA 146 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 G +++ N + AR + E S + ++ Sbjct: 147 TSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDARGENLFAETTSSGAPNVSQP 206 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + + Sbjct: 207 GLNGAGTLKQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMSR 262 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/260 (8%), Positives = 56/260 (21%), Gaps = 16/260 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ S + + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + S + I + S V + ++ +++ + F+ Sbjct: 121 QTNAQGQLVTSSGYQVI-PAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQIATFI 179 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227 + + + + Q + + + N +V Sbjct: 180 NPAGLDARGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVQELVNMIQTQRA 239 Query: 228 FETVPRDINFEKMNSYTVTS 247 +E + + TVT Sbjct: 240 YEINSKAVTTSDQMLQTVTQ 259 >gi|294339843|emb|CAZ88206.1| putative Flagellar basal body FlaE (FlgE) [Thiomonas sp. 3As] Length = 415 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 49/479 (10%), Positives = 109/479 (22%), Gaps = 70/479 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + F A + AS + NI NA+ + + + T + Sbjct: 2 STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADTYAAAIAGTSPQYGQVGIG 61 Query: 65 KVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + Q + + L ++ + + + Y + + Sbjct: 62 TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L T + + +I + S +N Sbjct: 122 GGQLIGTPAVSGVLTGGSGP--------------LQITTTTLAPKATTSGTLGLNLNASV 167 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 A D S +T+++++ Sbjct: 168 TPIPSGTAFSTSDPT-----------------------SYNYSTTSTVYDSLGTSHLLTT 204 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + S + V S + +A I+ + A L Sbjct: 205 YYALPSGSATASGQAWNVYYSVDGTTAAGGITSGGPSTIQFTPTGAISGTATLTASGLTW 264 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + D I+ + Y + S Sbjct: 265 A--------------------------DGASPSNITLNFAGSTNYNATSVVNSLTTDGSS 298 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + Y + + + L N ++ S Sbjct: 299 VGQLSNLSIDPSGVVFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNY--FVPTYASGQP 356 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +Q+Y + + I ++++QTLL Sbjct: 357 LTGQPGGGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLLSL 415 >gi|254470407|ref|ZP_05083811.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211960718|gb|EEA95914.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 260 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 3/208 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + Q+ R + + N + I + Sbjct: 52 GTETSDAGTIVPNGVQIGSGVRTAATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGT 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 I T + + G + + N + + + N + Sbjct: 112 IGYTRDGSFARSQTGQLVTKDGYPVQPGITIPDNARDVTINVQGLVQAMDDNDQVLNLGQ 171 Query: 394 INTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + T + +IG LE S L+ F +I + + + V+ ELS Sbjct: 172 LETARFTNQAGLEAIGDNLFLETPASGPPQLNNPGTAGFGNILQRHLESSNVDAVTELSS 231 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI +++Y +++K+I D+M T Sbjct: 232 LISAQRAYEMNSKIIKAADEMYSTTTNL 259 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/147 (6%), Positives = 20/147 (13%), Gaps = 22/147 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + A I N+ N Y R+ Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYENQRRMGTETSDAGTIV 62 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 P V + + + + S + Sbjct: 63 PNGVQIGSGVRT---AATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGTIGYTRDGS 119 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEE 133 S + + Sbjct: 120 FARSQTGQLVTKDGYPVQPGITIPDNA 146 >gi|255021354|ref|ZP_05293402.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254969217|gb|EET26731.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 46/474 (9%), Positives = 112/474 (23%), Gaps = 56/474 (11%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 F+ A + A+ + NI NA+ + + + V + + + Sbjct: 2 GAFSTALSGLQAANTDLQVLGNNISNANTVGFKSSNAEFADAYGAALVGSAPTYGQVGIG 61 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + + Q + + L ++ + + + I R+ Sbjct: 62 TRVMTVAQQFTQGNIQTTNNPLDVAINGNGFFQLNYNGDIVYSRNGQFQL---------- 111 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 ++ +V +Q + + + ++ Sbjct: 112 ----NSGGVIVDGNGAELLGIQAQNGKLTGATGPLTVSQNALPPQASSGITLALNLNSTN 167 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + N+ S T+++++ Sbjct: 168 QNLSG-------------------AAFNINDPNTYNYSTSNTIYDSLGTPQLVTTYYQLV 208 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + G + + L+ S + + Sbjct: 209 SGGTGSTTATSGETWNV---------------YYSATGTTGSGGITSGSLGQLVFSSTGQ 253 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 G P L DG + + S S + G ++ Sbjct: 254 LVSGGPFNVNPPLNWQDGAQSSTLNVSYSGSTNYNAPNAVVSATTNGYGVGQLT------ 307 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 ++ ++ Y + ++ + N L N S Sbjct: 308 GLSIDPGGNIYARYSNGQSQVLGQIALTRFANNNGLQNLGNNYWA--SSYSSGLPLSGAP 365 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + VNL ++L LI +Q+Y + + I + ++QTLL Sbjct: 366 GSTNLGVLQSGAVEQSNVNLSQDLVNLIVAQQAYQANAQTIKTQNTVVQTLLSL 419 >gi|300693340|ref|YP_003749313.1| flgg: flagellar basal-body rod protein [Ralstonia solanacearum PSI07] gi|299075377|emb|CBJ34672.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum PSI07] Length = 260 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + ++ F + D + S I Q ++ + Sbjct: 82 TQGNLQQTGNSTDAAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + +A L N E S Sbjct: 142 VPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + +L ++++Y T VN+ EE+ +I+ +++Y I++K + +D+ML+ L + Sbjct: 200 TANLAAPGANGIGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259 Query: 478 G 478 Sbjct: 260 L 260 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/242 (8%), Positives = 57/242 (23%), Gaps = 29/242 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ + Q I N+ N + + R + T Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L ++ F ++ Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDAAINGNGFFQVQ------MPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + S + TV NA + + ++ + + Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAITVPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQ 174 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 ++N ++ + AS + + + + + V ++ Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGANGIGVLNQNYVETSNVNVVEEMVNMI 234 Query: 220 YT 221 T Sbjct: 235 QT 236 >gi|221635451|ref|YP_002523327.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] gi|221158111|gb|ACM07229.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] Length = 259 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 12/127 (9%), Positives = 41/127 (32%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + S L+ + + G + + + LL + Sbjct: 129 DGSLLQPPLVLPAGAQLDRIAPDG-TVFVRAAGSGDAQPIGRLELVRFPNPQGLLAAGQG 187 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 W+ + + + + + V+L ++++ LI +++Y + + + Sbjct: 188 --RWIATEAAGQPETGAPGEGNWPPVLSGVREHSNVDLVDQMTQLIMAQRAYTANLRSLQ 245 Query: 467 FTDKMLQ 473 D++++ Sbjct: 246 TIDELIE 252 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 17/247 (6%), Positives = 47/247 (19%), Gaps = 35/247 (14%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------------PEN 49 A + + +I N+ N + + T Sbjct: 8 AVSGVRAQQVRLDTIAHNLANLETDGFKAARADFTAVPPQEYRVARAGEAPLGPVPIGSG 67 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V + + E+ + +L Sbjct: 68 VELSATTR---QFTLGPVEVTGDPFDLALAGPDTFVATEL-----PDGTTAFRRSGRLSI 119 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRRF 166 +L ++ A + + D + + Sbjct: 120 DATGRLVFEDGSLLQPPLVLPAGAQLDRIAPDGTVFVRAAGSGDAQPIGRLELVRFPNPQ 179 Query: 167 LSELTVVNDAIKFKTA----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 I + A + +++ S + + + + YT+ Sbjct: 180 GLLAAGQGRWIATEAAGQPETGAPGEGNWPPVLSGVREHSNVDLVDQMTQLIMAQRAYTA 239 Query: 223 DGTTLFE 229 + +L Sbjct: 240 NLRSLQT 246 >gi|315497881|ref|YP_004086685.1| flagellar basal-body rod protein flgg [Asticcacaulis excentricus CB 48] gi|315415893|gb|ADU12534.1| flagellar basal-body rod protein FlgG [Asticcacaulis excentricus CB 48] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + R+L + + + + + + + + + Q ++ +L Sbjct: 76 SVYRILTQGSATRTDNPYDIMVDGRGYFQVLMPSGETAYTRAGNFAVNDQGQLVTDDGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + V + + VA L N +L Sbjct: 136 VQPQITFPQDTKEVTISKTGQVSVTQDGVTAPTVIGQLQVASFFNEAGLEAIGDNL--YL 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S + ++ V + + + Y+ V+ E++ LI +++Y +++K+I D+M Sbjct: 194 QSGASGAPNIGTPGDVGYGTLMQGYTEASNVDAVSEITSLIVAQRAYEMNSKIIKTADEM 253 Query: 472 L 472 L Sbjct: 254 L 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 6/163 (3%), Positives = 28/163 (17%), Gaps = 34/163 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + +I NI N + + ++ Sbjct: 3 ALRTATTGMSAQQLNVDTISHNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSESGTVV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + Sbjct: 63 PTGIQVGGGVKTGSVYRI---LTQGSATRTDNPYDIMVDGRGYFQVL------MPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + ++ + + + + + Sbjct: 114 YTRAGNFAVNDQGQLVTDDGYLVQPQITFPQDTKEVTISKTGQ 156 >gi|333008282|gb|EGK27756.1| flagellar basal-body rod protein flgG domain protein [Shigella flexneri K-272] gi|333019772|gb|EGK39044.1| flagellar basal-body rod protein flgG domain protein [Shigella flexneri K-227] Length = 82 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S + + + + Y T VN+ EEL +I+V+++Y I++K + TD Sbjct: 14 YTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTD 73 Query: 470 KMLQTLLEG 478 +MLQ L + Sbjct: 74 QMLQKLTQL 82 >gi|332980934|ref|YP_004462375.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332698612|gb|AEE95553.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 264 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/203 (8%), Positives = 53/203 (26%), Gaps = 9/203 (4%) Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 R P + Q + G + +G Sbjct: 70 ARVVSSPKYFAQGPMQQTERNLDLGIDGTAFFAVTDGQGNVFYTRDGNFKLTETEGEDGR 129 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I + L G+ + ++ + + + Sbjct: 130 IHSYITTANGYWLLDTEGARIEIPAGTIEGDISIDPSGAVMVEG--AHIADIALVEFTNP 187 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L N + + + + + V++ +E++ +I+ +++ Sbjct: 188 QALETRGDNLYAVTDNVGPNYLTDGDSK------VRQGFLEASNVDIADEMARMIRAQRA 241 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y ++ +++ D+M+ L ++ Sbjct: 242 YQLNARVLQTADEMIG-LANSIR 263 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 25/125 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 ++ A + +I NI N D + R P + + Sbjct: 1 MIQALWTAGAGLISQQYNVDTIANNIANVDTTAFKRNTAHIEDMPYVYKLNPAIRQADNE 60 Query: 61 -----------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + +F A+ + N Sbjct: 61 GLLPHMGTGARVVSSPKYFAQGPMQQTERNLDLGIDGTAFFAVTD------GQGNVFYTR 114 Query: 104 ISKLR 108 + Sbjct: 115 DGNFK 119 >gi|308175373|ref|YP_003922078.1| flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|307608237|emb|CBI44608.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|328555347|gb|AEB25839.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] Length = 273 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 2/136 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 NP +G + ++ L + +N L Sbjct: 140 GGNPILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNLGIVNVNNPQELHAEG 199 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N S +L + + + V++ +E++ LI ++SY ++++ Sbjct: 200 DNLFSVNGTGASAIEELTGAKRQEIG-MEQGALENSNVDMSKEMTDLIVSQRSYQLNSRT 258 Query: 465 IMFTDKMLQTLLEGVK 480 I D+ML L+ V+ Sbjct: 259 ITLGDQMLG-LINSVR 273 Score = 42.3 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A N QQ ++ N+ N+D Y RD+ + R + + Sbjct: 1 MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL--------IRQQYDQI 52 Query: 63 FDK 65 DK Sbjct: 53 DDK 55 >gi|330943210|gb|EGH45617.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 +N L V + G + + + A L Sbjct: 1 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 60 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +LE S + + ++ V+ EEL +I +++Y +++K+ Sbjct: 61 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 118 Query: 465 IMFTDKMLQTLLE 477 I D+MLQ L + Sbjct: 119 ISTADQMLQNLTQ 131 >gi|328913715|gb|AEB65311.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens LL3] Length = 274 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 2/136 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 NP +G + ++ L + +N L Sbjct: 141 GGNPILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNLGIVNVNNPQELHAEG 200 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N S +L + + + V++ +E++ LI ++SY ++++ Sbjct: 201 DNLFSVNGTGASAIEELTGAKRQEIG-MEQGALENSNVDMSKEMTDLIVSQRSYQLNSRT 259 Query: 465 IMFTDKMLQTLLEGVK 480 I D+ML L+ V+ Sbjct: 260 ITLGDQMLG-LINSVR 274 Score = 42.3 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A N QQ ++ N+ N+D Y RD+ + R + + Sbjct: 2 MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL--------IRQQYDQI 53 Query: 63 FDK 65 DK Sbjct: 54 DDK 56 >gi|296283228|ref|ZP_06861226.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 2/166 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + + + + + + ++ + + G + +V Sbjct: 93 FDLAIQGLGYFQVQMPTGEIGYTRDGTFQLSDQGELVTSQGLVVEPGITIPQGAVDVAVS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 I ++ + +A L N +L S + + Sbjct: 153 RTGEVQIKIAGETEMQTVGQIELATFVNEAGLEAKGDNL--FLATAASGEPTIAAPGEPG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 F +++ + VN E++ LI +++Y ++++++ D+ML T Sbjct: 211 FGSVAQGFVEASNVNPVAEITALITAQRAYEMNSRVVKTADEMLGT 256 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 13/181 (7%), Positives = 33/181 (18%), Gaps = 34/181 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N + + R+ Sbjct: 3 SLSIAGTGMLAQQTNVDVISNNIANMNTTGFKRQRAQFQDLLYQQVSRPGASSAGPEARA 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + L + + ++ Sbjct: 63 PTGIQIGAGVRTGGVYRIAEQ---GALVQTDNRFDLAIQGLGYFQVQ------MPTGEIG 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + S + ++ + V + + KI + + + +I Sbjct: 114 YTRDGTFQLSDQGELVTSQGLVVEPGITIPQGAVDVAVSRTGEVQIKIAGETEMQTVGQI 173 Query: 161 S 161 Sbjct: 174 E 174 >gi|289670506|ref|ZP_06491581.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 142 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 3/134 (2%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 FN + + N A+ NI N + + ++ + R+ + Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 66 VLHAH---SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I E + Y N Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121 Query: 123 LGKTVIDNAEEVVQ 136 L + + Sbjct: 122 LQVFAPNPSGNGFD 135 >gi|183220929|ref|YP_001838925.1| flagellar basal-body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911025|ref|YP_001962580.1| endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775701|gb|ABZ94002.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779351|gb|ABZ97649.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y V++ E+ +I+V ++Y ++K + D +L L E ++ Sbjct: 237 QVLQGYLEASNVSVVTEMVDMIEVNRAYEANSKTMQTQDSLLGRLFEIMR 286 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 28/149 (18%), Gaps = 26/149 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------S 46 +L N + + + N+ N D + + T+ + Sbjct: 1 MLRGLYTGANGMISQQVRMDVVANNLANVDKTGFKKDTTVFKTFPEMLLHRYSEDGIGKT 60 Query: 47 PENVT----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE------MMSADDHY 96 P VV + + + A+ + + + Sbjct: 61 PMGSFDTSPVVGKLGFGAEVNEVYTRFEQGAVKKTDNIFDLMVQDQPGMEKPAFFTVLTN 120 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGK 125 + L Sbjct: 121 QGERLTRSGSFVLDKNGFVVTPQGFPLLG 149 >gi|330809230|ref|YP_004353692.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377338|gb|AEA68688.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 257 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 27/137 (19%), Gaps = 22/137 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENV--- 50 ++ + A + SI N+ N Y R + Sbjct: 1 MIDSLSIASSGLTANQAWIDSISNNVANMQTIGYKRSQVDFHDMVREVGTRDDGGGMTES 60 Query: 51 --TVVTQRSE--NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 T ++ ++ + +A+ F + + Sbjct: 61 LLTGAGIQASQPSQVFSPGTVRESGNALDLAIQGDGFFEVA------LPTGELAYTRAGR 114 Query: 107 LRDSLESYSKNLSEDIL 123 E L Sbjct: 115 FHLDSEGQLAMPDGQTL 131 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + Y VNL +E+S L+ +++Y ++ +L+ +D++L Sbjct: 190 TQASGEAIYAEPGRDGQGVLLQGYVEMSNVNLIDEMSGLVLAQRAYQMNARLLQASDQIL 249 Query: 473 QTLLEGVK 480 +T+ + Sbjct: 250 ETINNLRR 257 >gi|300114797|ref|YP_003761372.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] gi|299540734|gb|ADJ29051.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + F + D + + I N Q ++ + G Sbjct: 81 FTQGGLTQTGNSLDMAIQGRGFFQVLMPDGSLAYTRDGTFQIDANGQLVTSSGYPVQPGI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V + + D +A L N + E S Sbjct: 141 TIPQSALSVTVGSDGIVSVLMPGDGTPVQAGNLQLADFINPAGLQPTGNNL--FKETAAS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + VN+ EEL +I+ +++Y +++K I TD+ML Sbjct: 199 GVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAISSTDEML 254 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 10/143 (6%), Positives = 28/143 (19%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + A+ + + A+I N+ N + + R + Sbjct: 1 MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R+ L +++ + F + + Sbjct: 61 LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQVL------MPDGSLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + S + Sbjct: 115 TRDGTFQIDANGQLVTSSGYPVQ 137 >gi|288958675|ref|YP_003449016.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910983|dbj|BAI72472.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 2/193 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 V ++ +ARVL + + + D + + + Sbjct: 65 GVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQITLPSGDTSYTRAGNFKLSP 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + ++ + L+ + +N +A L Sbjct: 125 QGVIVTADGYTVQPNITIPTNAVDISINSSGEVLVKLDGQTATQNVGQIQLATFANAAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 N ++E S F +++ T VN+ +E++ LI +++Y + Sbjct: 185 EATGDNL--FMETAASGQPVTGNPGAPGFGRVTQGALETSNVNVVQEITTLITAQRAYEM 242 Query: 461 SNKLIMFTDKMLQ 473 ++K+I TD+M+Q Sbjct: 243 NSKVIKTTDEMMQ 255 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 39/178 (21%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 +I NI N+ Y ++ Sbjct: 3 SLAIGATGMIAQQLNVETISNNIANSTTTGYKKQRAEFQDLLYQNFRRIGSTSSDAGTVV 62 Query: 47 PENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + + + L+ + + + + ++ Sbjct: 63 PTGVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQI------TLPSGDTSYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S + + + V + N+S + K+ + +I Sbjct: 117 AGNFKLSPQGVIVTADGYTVQPNITIPTNAVDISINSSGEVLVKLDGQTATQNVGQIQ 174 >gi|330721008|gb|EGG99169.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC2047] Length = 92 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W E S + + + V+L EL LI +++Y + + I Sbjct: 23 WAETFDSGNPVVGTPGSASLGVLQSGALEESNVDLSAELVSLILAQRNYQANARAIETES 82 Query: 470 KMLQTLLEG 478 + Q +L+ Sbjct: 83 AVTQAILQI 91 >gi|23092317|gb|AAN08642.1| FlgG [Aeromonas hydrophila] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/262 (10%), Positives = 70/262 (26%), Gaps = 3/262 (1%) Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276 M T + +I N ++ Q P G+ A Sbjct: 1 MNPALWISKTGLDAQQTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADT 60 Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336 ++ ++ ++ + + + + + + D + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395 T+ + + + + + D ++ + Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINTSDFV 180 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N ++E S + I + T VN+ EEL LI+ Sbjct: 181 NASGLQPMGENM--FVETQSSGAPIQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQAH 238 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 + Y +++ ++ D M+ L++ Sbjct: 239 RVYEMNSNVLSAVDGMMSFLIQ 260 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/214 (6%), Positives = 41/214 (19%), Gaps = 17/214 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55 + ++ + A N+ NA + + + P + Sbjct: 1 MNPALWISKTGLDAQQTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADT 60 Query: 56 R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + K + + H+ + L + + ++ + Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + E + I E +V + + Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKG--DGASQVVGQINTSD 178 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + + + Q + Sbjct: 179 FVNASGLQPMGENMFVETQSSGAPIQGTAGADGL 212 >gi|310659662|ref|YP_003937383.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii DSM 519] gi|308826440|emb|CBH22478.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii] Length = 266 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 3/157 (1%) Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 D + + + D + + +++ + Sbjct: 113 FTRDGNFKFSVDGDVMTLVTSQGYTVLSTDDDVIEVESTMRNFSISEGGMVTAQDEAGEI 172 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + L N + + + + + T V Sbjct: 173 VELGEIQIVQFINPEGLQAMGNNFFSLTANSGEPVIEEDESKDT---KLYQGFLETSNVQ 229 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 L +E+ +I +++Y I++K I D M+QT+ + Sbjct: 230 LVDEMVRMIMAQRAYEINSKSIQTADDMMQTVNSLKR 266 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 24/130 (18%), Gaps = 29/130 (22%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + +I N+ N + + ++ T Sbjct: 3 ALWTAASGMRAQQLNMDTISNNLANVNTTGFKKQKTEFKDLLYTSMKSVSNDPELGEPVN 62 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + L + F ++ Sbjct: 63 LQIGHGVRPVATSRL---FTNGNLEKTENPTDVALEGPGFFVVEN----PTGNPEQLFTR 115 Query: 104 ISKLRDSLES 113 + S++ Sbjct: 116 DGNFKFSVDG 125 >gi|307293785|ref|ZP_07573629.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] gi|306879936|gb|EFN11153.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 4/178 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + ++ D + + + S Sbjct: 81 INAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEGVVVTSDGLPLIPQ 140 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 G ++ +A L N + E Sbjct: 141 ITVPEGATSITIGNDGTVSATLQGQTEPTQLGQVELASFMNPGGLQSTGGNLL--KETAA 198 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + + + Y T VN+ EEL +I+ +++Y +++K+I TD+MLQ Sbjct: 199 SGTPQVGVAGLDGRGVVRSGYLETSNVNVVEELVDMIETQRAYEVNSKMIKATDEMLQ 256 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 11/183 (6%), Positives = 35/183 (19%), Gaps = 33/183 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 A + A+ + + + I N+ N + + R Sbjct: 2 TNAALHVARTGLDAQNTKMRVIANNLANVNTTAFKRDRADFETLAYQQIVAAGANSDSEN 61 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + N L+ + + + +++ + Sbjct: 62 KFATGLNLGSGVALQGTSKIN---AQGTLNQTGNTLDMAIEGSGYFQVQQ------PDGS 112 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E L + ++ + Sbjct: 113 IAYTRAGNFTTTAEGVVVTSDGLPLIPQITVPEGATSITIGNDGTVSATLQGQTEPTQLG 172 Query: 159 EIS 161 ++ Sbjct: 173 QVE 175 >gi|53717916|ref|YP_106902.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei K96243] gi|53724567|ref|YP_104800.1| flagellar basal body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|67641540|ref|ZP_00440317.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|76808723|ref|YP_331881.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121598854|ref|YP_994293.1| flagellar basal body rod protein FlgG [Burkholderia mallei SAVP1] gi|124386502|ref|YP_001028058.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126439033|ref|YP_001057324.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126450732|ref|YP_001082865.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|126454438|ref|YP_001064566.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|134283616|ref|ZP_01770315.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167001539|ref|ZP_02267334.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|167717662|ref|ZP_02400898.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|167736705|ref|ZP_02409479.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 14] gi|167813804|ref|ZP_02445484.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 91] gi|167822320|ref|ZP_02453791.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 9] gi|167843910|ref|ZP_02469418.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei B7210] gi|167892412|ref|ZP_02479814.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 7894] gi|167900910|ref|ZP_02488115.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] gi|167917166|ref|ZP_02504257.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei BCC215] gi|217425015|ref|ZP_03456511.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|226199816|ref|ZP_03795367.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237810463|ref|YP_002894914.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|242317698|ref|ZP_04816714.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|254175110|ref|ZP_04881771.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|254182138|ref|ZP_04888735.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254196575|ref|ZP_04902999.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|254201898|ref|ZP_04908262.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|254207232|ref|ZP_04913583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|254261052|ref|ZP_04952106.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] gi|254295816|ref|ZP_04963273.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|254359734|ref|ZP_04976005.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|52208330|emb|CAH34263.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427990|gb|AAU48583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|76578176|gb|ABA47651.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121227664|gb|ABM50182.1| flagellar basal-body rod protein FlgG [Burkholderia mallei SAVP1] gi|124294522|gb|ABN03791.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126218526|gb|ABN82032.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] gi|126228080|gb|ABN91620.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|126243602|gb|ABO06695.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|134245025|gb|EBA45120.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|147747792|gb|EDK54868.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|147752774|gb|EDK59840.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|148028948|gb|EDK86880.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|157806194|gb|EDO83364.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|160696155|gb|EDP86125.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|169653318|gb|EDS86011.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|184212676|gb|EDU09719.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|217392035|gb|EEC32061.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|225928167|gb|EEH24203.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237504504|gb|ACQ96822.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|238522491|gb|EEP85935.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|242140937|gb|EES27339.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|243062740|gb|EES44926.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|254219741|gb|EET09125.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 61/183 (33%), Gaps = 2/183 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D N + S Q ++ + Sbjct: 82 TQGSLQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + + + +A L N E S Sbjct: 142 IPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFA--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ + + Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 200 APNVSQPGLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 Query: 478 GVK 480 + Sbjct: 260 MSR 262 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/213 (9%), Positives = 42/213 (19%), Gaps = 35/213 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ Q F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGQGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + S + T+ NA + + Q +A + Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 L+I+ + T+S Sbjct: 172 ALQIATFINPAGLDAKGENLFAETTSSGAPNVS 204 >gi|224825779|ref|ZP_03698883.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602003|gb|EEG08182.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 2/191 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L +V A + V F+ + + + + + + Q + Sbjct: 74 LLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQMSNGETGYTRAGQLQVNSDGQLVNAQG 133 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 +V I + +A LL N Sbjct: 134 LPIVPAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLTLANFVNPTGLLALGDNL-- 191 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + E S + + + + V + EE+ +I +++Y ++ K++ D Sbjct: 192 FQETTASGTPTVGNPGSDALGKLKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAAD 251 Query: 470 KMLQTLLEGVK 480 M+Q L + V+ Sbjct: 252 NMMQYLAQSVR 262 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 14/183 (7%), Positives = 42/183 (22%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + +I N+ N + + R + Sbjct: 1 MNPALWISKTGIQAQDARLGAIANNLANVNTVGFKRDRMVFEDLFYQVERQPGARVDANN 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP V + K + A+ + Q F ++ + Sbjct: 61 ASPSGVQLGNGTRLLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQ------MSNGETGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 +L+ + + N + + A + + + +++ Sbjct: 115 TRAGQLQVNSDGQLVNAQGLPIVPAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLT 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|167835113|ref|ZP_02461996.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis MSMB43] Length = 262 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 55/176 (31%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + D + N Q + S Sbjct: 87 QQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAITMPQNA 146 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 G +++ N + A+ + E S + ++ Sbjct: 147 TSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFAETTSSGAPNVSQP 206 Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + + Sbjct: 207 GLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMSR 262 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/269 (8%), Positives = 56/269 (20%), Gaps = 34/269 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ Q F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGQGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + + + S + I + S V + ++ +++ Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVI-PAITMPQNATSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + F++ + + + Q + + + + N + Sbjct: 171 GALQIATFINPAGLDAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVESSNVNVVQEL 230 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTS 247 V +E + + TVT Sbjct: 231 VNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 >gi|254496889|ref|ZP_05109737.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] gi|254353908|gb|EET12595.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 2/195 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + L ++ + A + F + D + + +I Sbjct: 65 GINTGTGVHLVSTQKLFEQGSIQHTNNAYDVAIQGQGFFTILMPDGTQAYTRNGAFSIDS 124 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 Q + +L + + N + L Sbjct: 125 TGQVVDSHGYLLQPAITLPAQTLGITISQDGVVSATVAGSTTPTNLGTIQLTNFMNPAGL 184 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 +N E S + L+ + ++ VN+ EEL +I+ ++ Y I Sbjct: 185 QPIGQNLYT--ETQSSGNPTLNNPGSNGLGTLLQNNLEASNVNVVEELVNMIQAQRGYEI 242 Query: 461 SNKLIMFTDKMLQTL 475 + K + D MLQ L Sbjct: 243 TAKGMQTVDNMLQYL 257 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/212 (6%), Positives = 38/212 (17%), Gaps = 33/212 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 +++ + A+I N+ N + Y + Sbjct: 4 ALWVSKSGLEAQEKTIATIANNLANVNTTGYKKDRAQFEDLLYQNTSQAGAQSSENSIIP 63 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V +V+ + + ++A Q F + Sbjct: 64 TGINTGTGVHLVSTQKL---FEQGSIQHTNNAYDVAIQGQGFFTIL------MPDGTQAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + +L + A+ + + + I Sbjct: 115 TRNGAFSIDSTGQVVDSHGYLLQPAITLPAQTLGITISQDGVVSATVAGSTTPTNLGTIQ 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + Sbjct: 175 LTNFMNPAGLQPIGQNLYTETQSSGNPTLNNP 206 >gi|312126442|ref|YP_003991316.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor hydrothermalis 108] gi|311776461|gb|ADQ05947.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SATSGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + + K+ + +I + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193 >gi|220903671|ref|YP_002478983.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867970|gb|ACL48305.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 4/218 (1%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 ++ + + + Q + + F++ D + + + Sbjct: 45 MYQTMRMAGSITEGDNRLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQ 104 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 N Q + KN++ D+ + Sbjct: 105 VDVNGELMYTRAGSFKLNQDGVVVTANGYILQPEFAVPPETKNISISSSGHIAALDAQGQ 164 Query: 385 NFIF--DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 P+ L RN S + +++ + V Sbjct: 165 EIAGAEIPLYTFINYAGLDARGRNLFTP--TEASGEAVEGIPGTDNVGTLAQGFLEMSNV 222 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y +++K I +D ML ++ + Sbjct: 223 EVVDEMVNMIVGQRAYEVNSKSIQTSDSMLGIAVQLKR 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/238 (7%), Positives = 46/238 (19%), Gaps = 31/238 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ I N+ N + + + Sbjct: 1 MMRSLWTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMRMAGSITEGDN 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V +K + + F + D Sbjct: 61 RLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQV-------DVNGELMY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEIELE 159 + + + + IL E + ++S + + Sbjct: 114 TRAGSFKLNQDGVVVTANGYILQPEFAVPPETKNISISSSGHIAALDAQGQEIAGAEIPL 173 Query: 160 ISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 + + + N + + D L Q E+ + + N Sbjct: 174 YTFINYAGLDARGRNLFTPTEASGEAVEGIPGTDNVGTLAQGFLEMSNVEVVDEMVNM 231 >gi|77165836|ref|YP_344361.1| hypothetical protein Noc_2373 [Nitrosococcus oceani ATCC 19707] gi|254434083|ref|ZP_05047591.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] gi|76884150|gb|ABA58831.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090416|gb|EDZ67687.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + F + D + + I N Q ++ + G Sbjct: 81 FTQGGLTQTGNSLDMAIQGRGFFQILMPDGSLAYTRDGTFQIDANGQLVTSSGYPVQPGI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V + + D +A L N + E S Sbjct: 141 TIPESALSVTVGSDGIVSVLMAGDGTPIQAGNLQLADFINPAGLQPTGNNL--FKETASS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + VN+ EEL +I+ +++Y +++K I TD+ML Sbjct: 199 GVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAISSTDEML 254 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 10/143 (6%), Positives = 28/143 (19%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + A+ + + A+I N+ N + + R + Sbjct: 1 MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R+ L +++ + F + + Sbjct: 61 LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQIL------MPDGSLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 + S + Sbjct: 115 TRDGTFQIDANGQLVTSSGYPVQ 137 >gi|315453407|ref|YP_004073677.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315132459|emb|CBY83087.1| flagellar hook protein, FlgE [Helicobacter felis ATCC 49179] Length = 601 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 9/234 (3%) Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + F++ ++ + +++++RD + + +P+ Sbjct: 374 SDFFMNSSKDPADPKTQEKWDVESSIIEVRDRTPITTKPVRQSVTFDK-EGKMHANPVTL 432 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + + P + D D + I Q L + + + Sbjct: 433 DFKGSPLTYSIDKSDDYTSSDVPYDDSKIYQISQDGKPKGLLANMRIDDDGVIHLIFTNG 492 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---MKSQ 426 + +F + V L + ++ S + + + Sbjct: 493 ALETMGRVGIATFINDQGLKKVG-----SNLFDIQNATVNGRAAPLSGNPIIGWDRDDGK 547 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F + Y T VN L+ LI +++ Y+++ K D +++ + + Sbjct: 548 LKFGKVMHKYLETSNVNAGHSLTNLILMQRGYSMNAKAFTTGDDLIKEAINLKR 601 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 28/154 (18%), Gaps = 23/154 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55 + A + S+ NI N + Y R D + TV Sbjct: 1 MNDTILNAYSGIKTHQFGIDSVSNNIANINTVGYRRNDPEFKSLFASHLNTLGGNTVTAN 60 Query: 56 RSENKNMF--------DKVLHAHSSAIGQQRLLQSFE--------ALKEMMSADDHYNNS 99 D S + +++ + Sbjct: 61 DRNYGAAAGGNAISSKDGEYMPSDSDFNMAYQGSGWFIVGPNKNGSMQINKDGYQQAQEN 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + Y N + + + Sbjct: 121 FYTRDGNFLRDADGYIVNSHGYYVYGVDLHKIKN 154 >gi|330943207|gb|EGH45614.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 368 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/265 (9%), Positives = 46/265 (17%), Gaps = 11/265 (4%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSN 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D VV + +R +A S + + + Sbjct: 122 MKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVAT 175 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + + Sbjct: 176 FDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPDK 235 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGS 265 N T S N + G V ++ + Sbjct: 236 NDLTFDSSGNLVTTAGAAVPTDSAN 260 >gi|149203125|ref|ZP_01880096.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] gi|149143671|gb|EDM31707.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] Length = 261 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 56/206 (27%), Gaps = 8/206 (3%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D V QL R S + L I G Sbjct: 51 AGTINAADGTVLPTGVQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEVRLPSG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH------YCDSFNKNF 386 T + ++ + G + ++ + + Sbjct: 111 QSGYTRDGALKRSADGVIVNSEGFPIAPEITIPEDARSITINAEGEVFAFFQDTAEAQQL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + G L N ++E S ++ Q + + Y V+ Sbjct: 171 GQIDLVGFTNPKGLEAIGGNL--FVETEASGPANVTTAGQDGLGTLRQGYLEDSSVDPVR 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E++ LI+ ++ Y ++ K+I D+ML Sbjct: 229 EITELIEAQRGYELNAKVITAADQML 254 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/180 (8%), Positives = 37/180 (20%), Gaps = 28/180 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + A + +I N+ N Y R Sbjct: 3 ILKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINAADGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L + + + + S Sbjct: 63 PTGVQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEV------RLPSGQSGYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L+ S + N + + + N + A+ + +I + Sbjct: 117 DGALKRSADGVIVNSEGFPIAPEITIPEDARSITINAEGEVFAFFQDTAEAQQLGQIDLV 176 >gi|300871597|ref|YP_003786470.1| flagellar basal-body rod protein FlgG [Brachyspira pilosicoli 95/1000] gi|300689298|gb|ADK31969.1| flagellar basal-body rod protein, FlgG [Brachyspira pilosicoli 95/1000] Length = 264 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 LL N + E S F I + + V + +E+ +I Sbjct: 180 FINQAGLLSIGDNL--YKETIASGPAFEGEAGSKGFPRIHQGFVEMSNVKVVDEMVDMIV 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y +++K + +D +L T++ + Sbjct: 238 AQRAYEMNSKAVQTSDNLLATVVNLKR 264 Score = 63.5 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 14/157 (8%), Positives = 32/157 (20%), Gaps = 33/157 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A + N + +I N+ N + Y + Sbjct: 1 MLRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + V + L A + + + F + + Sbjct: 61 VTPVGLQTGLGVKSAATQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + L +I +V Sbjct: 112 VSYTRDGSFKVDANGQLVTSNGYKLVPEIIFPENFLV 148 >gi|118589981|ref|ZP_01547385.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118437478|gb|EAV44115.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + ++ +V L N + E S S + F I + Y + V+ Sbjct: 168 RELGQLTLSNFANDVGLEPVGGNL--FRETEASGSPVSGVAGDPGFGVIRQGYLESSNVD 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +E++ LI ++ Y +++K++ D+M T+ G++ Sbjct: 226 PVKEITALISAQRGYEMNSKVMKAADEMAGTVTNGIR 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/184 (7%), Positives = 38/184 (20%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + + NI N + ++ R + Sbjct: 3 ALAIAATGMSAQQMNVEVVANNIANMNTTSFKRSQAEFSDLLYQAERLQGVPNRGGEDPV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L + + + + + + Sbjct: 63 PEGAQLGLGVRTAGIRKLH---AQGSLTNTGNQFDVALDGRGWFEI------TGPDDETL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + +I E + N S + K+ + ++ Sbjct: 114 FTRAGSFNKNADGRLVTIDGYPVEPAIIVPQETIEVVVNESGQVFAKVDGEMAPRELGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TLSN 177 >gi|315125986|ref|YP_004067989.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] gi|315014500|gb|ADT67838.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] Length = 261 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 56/206 (27%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P ++ L Q+ + +++ + E + F D Sbjct: 51 QPGAQVDELNQLPSGIQVGTGVRINGTQKQFTEGSFETTSNQLDVAIAGQGFFQIESPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + ++ + V D+ Sbjct: 111 ELLFTRNGQFQLNSESLLVNSNGLPLAQNIALPEGTTKVSIGTDGTVTAVVGKDAQAVEL 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 L N + E S + + F + + V++ + Sbjct: 171 GQMLTVNFANPAGLQSLGGNL--YRETAASGEPVEGIPGEDAFGGLQQFTIEGSNVSVVD 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I V+++Y ++ K++ D+ML Sbjct: 229 EMVSMIAVQRAYEMNAKVVSAADEML 254 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/183 (9%), Positives = 44/183 (24%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + + Sbjct: 1 MNSALWVSKTGLAAQDLRMTTISNNLANVSTAGFKKDRAVFEDLFYQVQKQPGAQVDELN 60 Query: 46 -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V T N + S+ + Q F ++ Sbjct: 61 QLPSGIQVGTGVRINGTQKQFTEGSFETTSNQLDVAIAGQGFFQIE------SPDGELLF 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + ES N + L + + + T + DA ++ Sbjct: 115 TRNGQFQLNSESLLVNSNGLPLAQNIALPEGTTKVSIGTDGTVTAVVGKDAQAVELGQML 174 Query: 162 NLR 164 + Sbjct: 175 TVN 177 >gi|163733143|ref|ZP_02140587.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] gi|161393678|gb|EDQ18003.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] Length = 246 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Query: 367 NLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++ ++ D+ + +AG L N E S + + Sbjct: 135 SINTSGEVFAYFSDATDAELLGQFNMAGFTNAKGLEALGGNLFA--ETEASGAAIVSTPG 192 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + Y + V+ E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 193 EDGLGTVRQGYLESSSVDAVREITELIEAQRGYEMNAKVISAADQMM 239 Score = 40.4 bits (92), Expect = 0.61, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 33/159 (20%), Gaps = 28/159 (17%) Query: 20 QFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVTQRS--- 57 + +I N+ N Y R P V + Sbjct: 2 RVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGTVLPTGVQLGLGVRPSA 61 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + L A + F + + L+ E Sbjct: 62 VSVQLQQGSLAATGGDLDLAIEGIGFLEV------TLPSGQAAYTRDGGLKRDAEGLIVT 115 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + ++ + + NTS D E+ Sbjct: 116 SDGYPVEPEIVIPDDARSISINTSGEVFAYFSDATDAEL 154 >gi|57167709|ref|ZP_00366849.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|305433215|ref|ZP_07402371.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] gi|57020831|gb|EAL57495.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|304443916|gb|EFM36573.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] Length = 263 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 48/175 (27%), Gaps = 2/175 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + + F + D + T + + + + Sbjct: 91 TDSLDMAIAGNGFFQIQLPDGTIAYTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAI 150 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + + Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAT 208 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q I + V L EE++ LI +++Y +K I +D ML + + + Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 42/208 (20%), Gaps = 31/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + A Q NI N + + + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADLMYQVMKYAGTSTSATT 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSS-AIGQQRLLQSFEALKEMMSADDHYNNSP 100 SP + V K + L A S+ ++ F ++ Sbjct: 61 LSPSGIEVGIGVRPTAVTKVFTEGNLKATSTDSLDMAIAGNGFFQIQ------LPDGTIA 114 Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + E N L V T + + + + Sbjct: 115 YTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185 + + N ++ + Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202 >gi|150388209|ref|YP_001318258.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] gi|149948071|gb|ABR46599.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] Length = 363 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 21/249 (8%), Positives = 65/249 (26%), Gaps = 8/249 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + A ++ NI N + + + PE V R N ++ Sbjct: 1 MFRGLYTATSGMQTAQRKLDVTSNNIANINTTGFKKDVVAAESFPE----VLIRKINHDI 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + +S + + + + + + + + D+ Sbjct: 57 RPRPFNLNSGVEVTREGEALGLSTDAGFFRVETDQGISHNREASFAPDEDGFLRTYRRDL 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 G+ ++ +V + + + +L L + + + Sbjct: 117 NGEIDASRGNYLLDATGQRV-QVDNGNLEVNNQGQLTFGGGATNLLYRPLGHVLGTMNSG 175 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + + + + + T +G ++ E Sbjct: 176 VRIQKIETNFAQGAVAETANPL---DVALNGQGFFRILTPNGEMYTRNGNFTMSNEGQLV 232 Query: 243 YTVTSESNP 251 T E Sbjct: 233 TTEGHEVEG 241 Score = 44.6 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + Y +N +E+ +I + Y + K++ D++LQ + Sbjct: 311 GEVLQGYLEESNINSIQEMVEMISTFRDYEANQKVVQAYDEILQKAV 357 >gi|239815249|ref|YP_002944159.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239801826|gb|ACS18893.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + S S+ ++ + V L EE+ L+ ++ Y + K++ +D Sbjct: 192 YRSSTGSGEAIAAKASEDGMGSFAQGFLEGSNVKLTEEMVNLMVAQRVYEANVKVMQASD 251 Query: 470 KMLQTLLEGVK 480 +ML ++ G++ Sbjct: 252 EMLG-MINGLR 261 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 41/212 (19%), Gaps = 34/212 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +I N+ N + + + + Sbjct: 1 MFDALYISATGMQAQQLNVDTIANNLANVNTTGFKKSKVGFSDLMVREAGRLAQTPQEAG 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V + + L SA + F + + Sbjct: 61 ILGAESRLGAGVGIASVSKLFDM---GDLKKTESAFDIAIQGEGFLEV------TMPDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S + + + L V V+ IE+ Sbjct: 112 SSFTRGGTFKVNRDGLLATSGGFPLKSNVAIPDNA-QNMQIDGDGRVRVQVGGQSTPIEV 170 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 +L RF S ++ +S Sbjct: 171 GQLDLVRFTSPSALLPQGDNLYRSSTGSGEAI 202 >gi|86356312|ref|YP_468204.1| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42] gi|86280414|gb|ABC89477.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 17/243 (6%), Positives = 43/243 (17%), Gaps = 38/243 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + + R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + F ++ + Sbjct: 63 PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + E + + ++ Sbjct: 114 YTRAGAFNKNDQGQLVTIDGYEVLPGITIPQGSTELTISRSGEVSAKLPGQTDPTVLGQL 173 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + N + AS D+ K + + Sbjct: 174 TLADFVNEAGLQPIGDNL-FQETPASGEAVVGNPDEEGFAYMKQGYLESSNVDPVKEITE 232 Query: 218 VVY 220 ++ Sbjct: 233 LIS 235 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 87 TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDGYEVLPGITIPQGS 146 Query: 365 VKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + +A L N + E S + Sbjct: 147 TELTISRSGEVSAKLPGQTDPTVLGQLTLADFVNEAGLQPIGDNL--FQETPASGEAVVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253 >gi|83816512|ref|YP_446741.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294508677|ref|YP_003572736.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] gi|83757906|gb|ABC46019.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294345006|emb|CBH25784.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 19/189 (10%), Positives = 53/189 (28%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 R K + + F D + + T+ + Sbjct: 76 ATVRNFSQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTRDGTFTLSSEGNIVTQTGLK 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + +S +A + L N Sbjct: 136 VQPNINVPPNAVEISIDQEGTVKARLQGESEMVELGQMELARFPNSAGLRPQGGNLYEQ- 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + ++ + + V + +E++ LI+ +++Y ++++++ +D+M Sbjct: 195 -TESSGEPFIGTPGRGGLGNVRQGFLEKGNVKVVQEMTSLIQAQRTYELNSRMVTTSDEM 253 Query: 472 LQTLLEGVK 480 +QT + Sbjct: 254 MQTANNVKR 262 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 31/157 (19%), Gaps = 8/157 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A +I N+ NA+ Y R + + + Sbjct: 5 SLQTAALGMQAQQTSIDNIANNLSNANTTGYKRSRVVFQDLLYENVQASAEGQTDGAEPA 64 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 L S + S + ++ D + + Sbjct: 65 ELQIGSGTTAVATVRN--------FSQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTR 116 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + +VQ +E+ I Sbjct: 117 DGTFTLSSEGNIVTQTGLKVQPNINVPPNAVEISIDQ 153 >gi|149191155|ref|ZP_01869413.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148834993|gb|EDL51972.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 4/195 (2%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 QL RV+ N+ L I + T Q Sbjct: 63 PTGIQLGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQFQT 122 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE-- 402 S+ + G + + + + G T V + Sbjct: 123 NSDGQLVNTQGYPLIPEIVIPPEATLVSITADGVATATIPGQVNPEALGQITIVKFMNPA 182 Query: 403 --YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 A+ + E S + + + V + EE+ +I +++Y + Sbjct: 183 GLAAQGGNLFAETEGSGEAVELVAGTEGSGQLKQGALEGSNVQVVEEMVDMIATQRAYEM 242 Query: 461 SNKLIMFTDKMLQTL 475 S K++ D+MLQ + Sbjct: 243 SAKMVSAADEMLQYI 257 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 15/204 (7%), Positives = 43/204 (21%), Gaps = 27/204 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + ++ + +I N+ N + + R + +V Sbjct: 1 MHSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELN 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R + + L F ++ Sbjct: 61 EHPTGIQLGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIEN------SDGELLY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + N L ++ E + + I + E +I+ Sbjct: 115 TRNGQFQTNSDGQLVNTQGYPLIPEIVIPPEATLVSITADGVATATIPGQVNPEALGQIT 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKH 185 ++ F Sbjct: 175 IVKFMNPAGLAAQGGNLFAETEGS 198 >gi|258592560|emb|CBE68869.1| Flagellar basal-body rod protein flgG (Distal rod protein) [NC10 bacterium 'Dutch sediment'] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 2/98 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ ++ L RN L + S I + + V Sbjct: 167 SQQIGTIELSRFINPAGLQSVGRNLS--LPTSASGDPTSGAPGTQGLGTIGQGFLELSNV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + EE+ LI +++Y +K + D+MLQ + Sbjct: 225 KVVEEMVNLIMSQRAYEAGSKAVQAADEMLQVSNNIRR 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 36/209 (17%), Gaps = 18/209 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48 ++ A +I N+ N + + R T S Sbjct: 1 MIRALFSAVAGMQAQQLNLDNIANNLANVNTTGFKRSRLDFQDLFYQTYRPAGASTASGA 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107 + V Q Q + Sbjct: 61 EIPVGIQVGHGSKPIASQRIYIQGDPQQTENPLDLMIEGDGFFQVLRPDGTIAYTRAGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLR 164 + L V A+ + + + + A + Sbjct: 121 KRDANGRVVTSDGFALQPEVSIPAQAMTIHVGSDGVVSATIPGQTASQQIGTIELSRFIN 180 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + N ++ + + Q Sbjct: 181 PAGLQSVGRNLSLPTSASGDPTSGAPGTQ 209 >gi|316932823|ref|YP_004107805.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] gi|315600537|gb|ADU43072.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] Length = 262 Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/181 (9%), Positives = 48/181 (26%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + P + + I+ D + + R + Sbjct: 82 TQGTLSPTGNDLDMAVRGEGFFKIQMPDGTFAYTRDGSFTTDNTGRIVTAGGNPVQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ + + + ++E S + Sbjct: 142 IPNGATSITVATNGQVSVTISGSTTPTVLGQIGLTRFINKAGLQPQGDNLFVETPASGTP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + I + V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 202 QDGIATADGLGDIMQKTLEQANVEVVTEISDLISAQRAYEMNAKVVSAADQMLQSTANMF 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 14/181 (7%), Positives = 29/181 (16%), Gaps = 34/181 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGVDIGGGVKTVGTPRL---MTQGTLSPTGNDLDMAVRGEGFFKIQ------MPDGTFA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + T+ T+ + I + +I Sbjct: 114 YTRDGSFTTDNTGRIVTAGGNPVQPTITIPNGATSITVATNGQVSVTISGSTTPTVLGQI 173 Query: 161 S 161 Sbjct: 174 G 174 >gi|146295641|ref|YP_001179412.1| hypothetical protein Csac_0595 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409217|gb|ABP66221.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 267 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGDPVSEEEIEGPKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A I N+ N + + + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVIAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFSEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + + K+ E +I + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDAEGQIQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193 >gi|203284668|ref|YP_002222408.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201084111|gb|ACH93702.1| flagellar basal-body rod protein [Borrelia duttonii Ly] Length = 265 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L N + E S + + + V + Sbjct: 171 ELGQIEIARFVNPAGLNAIGNNI--FKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAI 228 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ +I +++Y I++K I +D ML K Sbjct: 229 AEEMVTMIVAQRAYEINSKAIHTSDNMLGIANNLKK 264 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/170 (5%), Positives = 32/170 (18%), Gaps = 27/170 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + +I N+ N + + + Sbjct: 1 MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATENT 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + ++ L + F + Sbjct: 61 VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVL------LSDGTYGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + IL + E + + S + ++ + Sbjct: 115 TRDGSFKIDANGNLVTNQGYILLPEISFPEEYIKNSIAISQEGIISVKVN 164 >gi|331005440|ref|ZP_08328819.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330420716|gb|EGG95003.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 258 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 ++ L +L +S ++ F + + + + VNL Sbjct: 165 PVGQLELSTFLNESGLSSLGGGI--YLPSLKSGDPSYGQPGEIGFGTLQQGFIESSNVNL 222 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EEL+ L+ ++ Y ++ +++ D ML +++ ++ Sbjct: 223 VEELTSLMSAQRGYELNARVVQAADDML-SIINTLR 257 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 30/137 (21%), Gaps = 11/137 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L FN + + Q +I N+ N + Y + + + Sbjct: 1 MLDAFNISATGLQSQQTQVETIANNLSNVNTDGYKKSKVIFQDIVSKQLGINTNGLINQA 60 Query: 63 FDKVLHAHSSAI-----------GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + S+ + R L F + + L Sbjct: 61 SNNTGIGSSANLINKIFTGGDPKATDRPLDIFIQGSGFLEVVMPDGRYGYTRVGNLNVDE 120 Query: 112 ESYSKNLSEDILGKTVI 128 N L V Sbjct: 121 NGVLTNSDGFSLSSLVQ 137 >gi|325529016|gb|EGD06029.1| flagellar basal body rod protein FlgG [Burkholderia sp. TJI49] Length = 262 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S Q ++ + Sbjct: 82 TQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + S +A L N E S Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEARGENLFS--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 Query: 478 GV 479 Sbjct: 260 MK 261 Score = 50.8 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 21/143 (14%), Gaps = 33/143 (23%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAGFEDLLYQTIRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSED 121 + + + + S Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134 >gi|330899402|gb|EGH30821.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 93 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 W E S +I+ V+L EL LIK + +Y + K Sbjct: 19 AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKT 78 Query: 465 IMFTDKMLQTLLEG 478 I ++QT ++ Sbjct: 79 ISTQSTIMQTTIQM 92 >gi|254251193|ref|ZP_04944511.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] gi|124893802|gb|EAY67682.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] Length = 262 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/252 (10%), Positives = 74/252 (29%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + +++ + +N V + + + Q Sbjct: 11 GMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELPSGLQLGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++A + + + + + D + N Q + Sbjct: 71 GVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S G +++ N + A+ Sbjct: 131 SSGYQILPAITVPQNATSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFINPAGLEAKGEN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + E S + ++ +++ Y VN+ +EL +I+ +++Y I++K + + Sbjct: 191 LFAETTSSGAPNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTS 250 Query: 469 DKMLQTLLEGVK 480 D+MLQT+ + + Sbjct: 251 DQMLQTVTQMSR 262 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 41/204 (20%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA + + Q +A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNATSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204 >gi|221199741|ref|ZP_03572784.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] gi|221208654|ref|ZP_03581654.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221171465|gb|EEE03912.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221179980|gb|EEE12384.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] Length = 262 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S Q ++ + Sbjct: 82 TQGSLTQTGNSKDVAINGSGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + S +A L N E S Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 Query: 478 GV 479 Sbjct: 260 MK 261 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 22/143 (15%), Gaps = 33/143 (23%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGSGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSED 121 + + + + S Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134 >gi|161526184|ref|YP_001581196.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189349100|ref|YP_001944728.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|221215573|ref|ZP_03588536.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] gi|160343613|gb|ABX16699.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189333122|dbj|BAG42192.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] gi|221164561|gb|EED97044.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] Length = 262 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D N + S Q ++ + Sbjct: 82 TQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + ++ + S +A L N E S Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259 Query: 478 GV 479 Sbjct: 260 MK 261 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 22/143 (15%), Gaps = 33/143 (23%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSED 121 + + + + S Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134 >gi|170737040|ref|YP_001778300.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|169819228|gb|ACA93810.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 261 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 3/135 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYAR 405 N L + ++ + +A LL Sbjct: 129 NAQGLPLVPGIDIPPEAVGITISENGTVSVSTGAGKTLAEVGQLQLAQFVNPAGLLALGG 188 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N E S + Q I + V EE+ +I +++Y ++ K++ Sbjct: 189 NLYA--ETVASGAPTESEPGQNGIGTIKQGALEGSNVLAVEEMVEMIAAQRTYEMNTKVL 246 Query: 466 MFTDKMLQTLLEGVK 480 D M+Q L + + Sbjct: 247 SAADNMMQYLSQAAR 261 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 28/141 (19%), Gaps = 26/141 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + ++ + +I N+ N + + R + Sbjct: 1 MNHAMWISKTGIQAQDAKLQAIANNLANVNTVGFKRDRAVFEDMFYRAERQPGAQVSDNA 60 Query: 47 -PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + L + + F ++ Sbjct: 61 TGPGVQLGNGTRIAGTQKVFTTGALQETGQPLDVAVVGNGFLQVE------MPNGEVGYT 114 Query: 103 YISKLRDSLESYSKNLSEDIL 123 +LR + + N L Sbjct: 115 RAGQLRLNDQGRLTNAQGLPL 135 >gi|322421662|ref|YP_004200885.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] gi|320128049|gb|ADW15609.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] Length = 262 Score = 65.1 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 63/252 (25%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + + + S + A Sbjct: 11 GMQAQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNATTVPTGIQVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A + + + ++ D + ++ + Q R Sbjct: 71 GVRPGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQSDGSTAYTRAGSLKKDGQGRVVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S + G ++ + + A Sbjct: 131 SDGQPVIPEVLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQLASFTNPSGLNAIGKN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +L + S + Q + + Y V++ EE+ +I +++Y I++K I + Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGSLEQGYIEQSNVSVMEEMVSMIVSQRAYEINSKAIQAS 250 Query: 469 DKMLQTLLEGVK 480 D MLQ + Sbjct: 251 DDMLQQAAALKR 262 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 12/180 (6%), Positives = 36/180 (20%), Gaps = 27/180 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + + N+ N+ + + T Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 45 ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V K + + + F +++ ++ Sbjct: 61 TVPTGIQVGLGVRPGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQ------SDGSTAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ + + V+ + + T + I Sbjct: 115 TRAGSLKKDGQGRVVTSDGQPVIPEVLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQ 174 >gi|226327743|ref|ZP_03803261.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] gi|225203447|gb|EEG85801.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] Length = 153 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 27/136 (19%), Gaps = 21/136 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + R+ + Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60 Query: 46 -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 +P + + T + + LH+ + + Sbjct: 61 NAPSGLQIGTGVR---PVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRD 117 Query: 105 SKLRDSLESYSKNLSE 120 + S Sbjct: 118 GSFQMDQNGQLVTTSG 133 >gi|312794499|ref|YP_004027422.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876700|ref|ZP_07736680.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|311796540|gb|EFR12889.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|312181639|gb|ADQ41809.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kristjanssonii 177R1B] Length = 267 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGDPVSEEEIEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + + K+ + +I + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193 >gi|222530298|ref|YP_002574180.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] gi|222457145|gb|ACM61407.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] Length = 267 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + I + + V + +E+ LI +++Y I++K I D ML Sbjct: 200 SAASGDPMSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259 Query: 473 QTLLEGVK 480 + Sbjct: 260 SMANNLKR 267 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49 ++ A I N+ N + + + Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 VT + K+ + L + + E N Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113 Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + S +E K ++ D + E V+ S+ + + K+ + +I + Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173 Query: 163 LRRFLSELTVVNDAIKFKTA 182 + + +N Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193 >gi|167568109|ref|ZP_02361025.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis EO147] gi|167574227|ref|ZP_02367101.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis C6786] Length = 262 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 54/181 (29%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + + D + N Q + S Sbjct: 82 TQGALQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ N + A+ + E S Sbjct: 142 IPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQVATFINPAGLDAKGENLFAETTSSGQP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ + + Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 202 NVSQPGLNGAGTLKQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMS 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 42/213 (19%), Gaps = 35/213 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ Q F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGALQQTGNSKDVAINGQGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + S + T+ NA + + Q +A + Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIG 171 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 L+++ + T+S Sbjct: 172 ALQVATFINPAGLDAKGENLFAETTSSGQPNVS 204 >gi|307731361|ref|YP_003908585.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] gi|307585896|gb|ADN59294.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] Length = 262 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S Q ++ + Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + I+ + + +A L N E S Sbjct: 142 VPSNATSLTIGSDGAVSISVAGSTNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 32/168 (19%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPSNATSLTIGSDGAVSISVAGSTNTQ 168 >gi|323527711|ref|YP_004229864.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] gi|323384713|gb|ADX56804.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] Length = 262 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S Q ++ + Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + I + + +A L N E S Sbjct: 142 VPTNATSLTIGSDGAVSITVAGSTNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPTNATSLTIGSDGAVSITVAGSTNTQ 168 >gi|167628969|ref|YP_001679468.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] gi|167591709|gb|ABZ83457.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] Length = 258 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENV 50 ++ + +I N+ N + Y + P + Sbjct: 1 MMRALYSSATGMIAQQLNMDTISNNLANVNTNGYKKSRAEFQDLLYSTIRTATAQVPTGM 60 Query: 51 TVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + + + + + L ++ Sbjct: 61 QVGAGVRPSSITTIISSGNMVQTDNPYDLAITGEGYFRLIN----PNNDAVPFYTRDGSF 116 Query: 108 RDSLESYSKNLSEDILGK 125 + E Y N L Sbjct: 117 KLDKEGYLVNADGLRLDG 134 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 23/210 (10%), Positives = 51/210 (24%), Gaps = 2/210 (0%) Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 A + V + +P + + D Sbjct: 51 TATAQVPTGMQVGAGVRPSSITTIISSGNMVQTDNPYDLAITGEGYFRLINPNNDAVPFY 110 Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390 + S + + DG + ++ A + Sbjct: 111 TRDGSFKLDKEGYLVNADGLRLDGFDPLPEGATDLDINADGMISYKNAVGERVDTGQRIQ 170 Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + L RN + S I++ Y + V + +E+ Sbjct: 171 LYTFPNPAGLNREGRNLLTQ--SEASGEAIGGDAGADGRGRIAQRYLESSNVQVVDEMVA 228 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I +++Y ++ K I D+ML + Sbjct: 229 MITAQRAYEVNTKAIQTADEMLGQANNLKR 258 >gi|254488392|ref|ZP_05101597.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] gi|214045261|gb|EEB85899.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] Length = 261 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 55/204 (26%), Gaps = 4/204 (1%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D V QL R S + L I Sbjct: 51 AGSVSASDGTVLPTGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + T + + G + ++ + ++ I + Sbjct: 111 QAAYTRDGGLKRTGEGLIVTSDGFPVAPEIVIPEDARSISINASGEVFAYFDGNIAAQLL 170 Query: 393 GINTNVTLLEY----ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 G T A ++E S + + + + Y V+ E+ Sbjct: 171 GQFTMSGFSNAKGLEAIGGNLFVETEASGAALVATPGLNGLGTLRQGYLEDSSVDAVREI 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKML 472 + LI+ ++ Y ++ K+I D+M+ Sbjct: 231 TELIEAQRGYEMNAKVISAADQMM 254 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 19/205 (9%), Positives = 44/205 (21%), Gaps = 27/205 (13%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N Y R + Sbjct: 3 ALKIAATGMSAQQMRVETISNNLANMSTTGYNARRAEFSDLHYQQLARAGSVSASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102 P V + + + L + + F + + + Sbjct: 63 PTGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSGQAAYTRDGGLKR 122 Query: 103 YISKLRDSLESYSKNLS----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 L + + + ED ++ + E A ++ + Sbjct: 123 TGEGLIVTSDGFPVAPEIVIPEDARSISINASGEVFAYFDGNIAAQLLGQFTMSGFSNAK 182 Query: 159 EISNLRRFLSELTVVNDAIKFKTAS 183 + + L T + A T Sbjct: 183 GLEAIGGNLFVETEASGAALVATPG 207 >gi|37360908|dbj|BAC98362.1| flagellar basal-body rod protein [Burkholderia glumae] Length = 251 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 58/170 (34%), Gaps = 2/170 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S Q ++ + + ++ A Sbjct: 83 DVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQLVTSAGYQVLPAITVPQNAQSLTIGA 142 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L +N E S + ++ Sbjct: 143 DGVVTVTQPGSTNAVQIGSMQLATFINPEGLNALGQNLFA--ETTSSGAPNVTTPGLNGA 200 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 201 GSLNQGYVESSNVNVXQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 250 Score = 40.8 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 10/132 (7%), Positives = 29/132 (21%), Gaps = 7/132 (5%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 N Q I N+ N + + ++ + + + Sbjct: 1 MNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLY-------QTVRQPGANSTQQTELPS 53 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 Q A + + + + + ++ + A Sbjct: 54 GLQLGTGVQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTAYTRDGSFQANN 113 Query: 134 VVQNFNTSAREV 145 Q ++ +V Sbjct: 114 QGQLVTSAGYQV 125 >gi|154249604|ref|YP_001410429.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] gi|154153540|gb|ABS60772.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] Length = 261 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 3/192 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 +L ++ E A + F ++D + + + + Sbjct: 73 KLAATTKIFTQGNLENTGNALDLAITGDGFFQIQLQDGRIAYTRDGQFKLDSQGRVVTAN 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 L V + ++ ++ + D + + L N Sbjct: 133 GLLLSPAIVVPQNAVSLT-VSPDGIVSVELADGTIQQLGTITLVRFVNPAGLKSIGDNL- 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +L+ N S + Q F I + Y V++ +E+ +I ++Y +++ I+ Sbjct: 191 -YLQTNASGEPIEGVGGQDGFGTIMQGYVEKSNVDVVKEMVDMITAMRAYEFNSRSIITA 249 Query: 469 DKMLQTLLEGVK 480 D+MLQT + Sbjct: 250 DQMLQTASNLRR 261 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 18/224 (8%), Positives = 56/224 (25%), Gaps = 27/224 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + ++ NI N D Y + + Sbjct: 1 MINSLYTAATGMWTQQFKMDTVSNNIANVDTAGYKKIKAEFQDLIYSYSKNAGAATAQNS 60 Query: 45 ISPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +P + V + K L +A+ F ++ Sbjct: 61 TTPTGIYVGHGVKLAATTKIFTQGNLENTGNALDLAITGDGFFQIQ------LQDGRIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + + +L ++ V + ++ +++ Sbjct: 115 TRDGQFKLDSQGRVVTANGLLLSPAIVVPQNAVSLTVSPDGIVSVELADGTIQQLGTITL 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 + L + D + +T + + + + +D + + Sbjct: 175 VRFVNPAGLKSIGDNLYLQTNASGEPIEGVGGQDGFGTIMQGYV 218 >gi|296157454|ref|ZP_06840289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] gi|295892226|gb|EFG72009.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] Length = 262 Score = 64.7 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 56/179 (31%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + ++ D + N Q + S Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPGIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ + + A+ + E S + Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQVATFINPAGLDAKGENLFAETASSGAP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPGITIPNNATSLTIGSDGVVSITVAGSTNSQ 168 >gi|68164544|gb|AAY87273.1| predicted flagellar basal body rod protein [uncultured bacterium BAC17H8] Length = 262 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +A L + ++E + S + + + + + VN+ Sbjct: 170 AVGQLQIADFTNRGGLQPIGESF--YVETDTSGAPIVGNPQDAGLGRVIQGALESSNVNV 227 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472 EL +I+ +++Y +S+K I D+ML Sbjct: 228 VTELVEMIETQRAYEVSSKSITSVDEML 255 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 29/145 (20%), Gaps = 28/145 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51 MS + + A+ N + I N+ N + + R V Sbjct: 1 MS-TSSMHVAKTGLNAQQTRMQIIANNLANVNTTGFKRDRANFETLLYQVRRVAGDQVTA 59 Query: 52 ---------VVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V T L +++ F + Sbjct: 60 EANLTSSFSVGTGARIVNTQKAHTQGSLITTDNSLDLALEGGGFFQVL------LPDGRV 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILG 124 + E S +L Sbjct: 114 GYTRNGAFSTNSEGVLTTSSGYVLQ 138 >gi|148256818|ref|YP_001241403.1| putative flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] gi|146408991|gb|ABQ37497.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] Length = 601 Score = 64.7 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 41/418 (9%), Positives = 100/418 (23%), Gaps = 5/418 (1%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L A + + + + + S + D Sbjct: 189 ATGTLVAAGGLNSADLSNVPLPVGTNFYADSTVTGGTAVNKNAANITTSTLLSGAAATDS 248 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + A ++ L+++ V TA Sbjct: 249 ITTNFTAGDTITLTGSAGDVVTFTFVASGASGTQINVGDSVGTLLAKIAAVTGVQPTITA 308 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K H + L + + + G + + N Sbjct: 309 GKITLHSGSGENWSLSSASAGFTALGFTSPVALNRTASAGTGIVIGNDLTNFNNETISGG 368 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 S ++ + S+ K + + V Sbjct: 369 AVTAYNSAGTPVNVQLRWGKVDSSTLGTGHKDIWNLFYQTNSSATGSTVAWQNVGTNFTF 428 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + + + S + + + Sbjct: 429 ASDGSLTSPTTSSISIPNIVVDGTTLGTVSLNISSGALTQYASTIGSATINNITQNGFAA 488 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++++A I S + V + N T A + + ++S + Sbjct: 489 GQLQSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIG 548 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS ++ +E + LI +Q+Y+ + K+I + M+Q LL ++ Sbjct: 549 AS-----GKISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR 601 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 39/446 (8%), Positives = 89/446 (19%), Gaps = 22/446 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54 M + N + + + S +I NI NA Y T +P Sbjct: 1 MGIFDAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108 + K + S A F +++ S D+ + + Sbjct: 61 VTAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKASSVVDNVPVFTGVTNYTRRGDFQ 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + N + L +D + + + Sbjct: 121 LNANGNLINGAGYYLMGVAVDPKTGNATGNVPT----------VLQFANNFVPAQATTAI 170 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + AS + A L L + + D V Sbjct: 171 QYAANLPTQPKTGASGNAATGTLVAAGGLNSADLSNVPLPVGTNFYADSTVTGGTAVNKN 230 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T + +N D + ++ + G V + + V Sbjct: 231 AANITTSTLLSGAAATDSITTNFTAGDTITLTGSAGDVVTFTFVASGASGTQINVGDSVG 290 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + G + G + S Sbjct: 291 TLLAKIAAVTGVQPTITAGKITLHSGSGENWSLSSASAGFTALGFTSPVALNRTASAGTG 350 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + + Y + G + + + Sbjct: 351 IVIGNDLTNFNNETISGGAVTAYNSAGTPVNVQLRWGKVDSSTLGTGHKDIWNLFYQTNS 410 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434 + + + ++ Sbjct: 411 SATGSTVAWQNVGTNFTFASDGSLTS 436 >gi|209521591|ref|ZP_03270289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] gi|209497974|gb|EDZ98131.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D + S Q ++ + Sbjct: 82 TQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + I S + +A L N E S Sbjct: 142 IPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259 Query: 478 G 478 Sbjct: 260 M 260 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/216 (4%), Positives = 39/216 (18%), Gaps = 15/216 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + + S + + + + ++ + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFIN 180 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203 F + A + +++ Sbjct: 181 PAGLDAKGENLFAETASSGAPNVSQPGLNGAGTLNQ 216 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] gi|254040055|gb|ACT56851.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 3/192 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q+ + V + V + D + S I Q + Sbjct: 74 QISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTAD 133 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 G V + +K L +S + +A L N + Sbjct: 134 GNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLL 193 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + S + + F H+ + Y V+ +E+S +I +++Y +++K+I Sbjct: 194 AR--TSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAA 251 Query: 469 DKMLQTLLEGVK 480 D+M +L+ ++ Sbjct: 252 DEM-SSLITKMR 262 Score = 41.2 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 17/243 (6%), Positives = 50/243 (20%), Gaps = 37/243 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44 F A + I NI N + Y R Sbjct: 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62 Query: 45 -----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + R + + + + + + ++ Sbjct: 63 VPEGISIGSGVQISSVR---NVYTQGEVVHTGNNLDLALVGRGWFQVE------TPDKTV 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + L ++ E + S + + ++D + + Sbjct: 114 MYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQ 173 Query: 160 ISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + ++ + + S D K + + Sbjct: 174 LLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISE 233 Query: 218 VVY 220 ++ Sbjct: 234 MIS 236 >gi|170694394|ref|ZP_02885548.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] gi|170140817|gb|EDT08991.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 56/179 (31%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + ++ D + N Q + S Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ + + A+ + E S + Sbjct: 142 VPTNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPTNATSLTIGSDGVVSITVAGSTNSQ 168 >gi|1086561|gb|AAB68968.1| FlgG [Agrobacterium tumefaciens] gi|2459714|gb|AAB71790.1| FlgG [Agrobacterium tumefaciens] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 19/215 (8%), Positives = 57/215 (26%), Gaps = 8/215 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 +++ + + + + + + N + I Sbjct: 41 TDLLYQTERMQGVPNRANQAIVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQ 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + ++ + + G + + + Sbjct: 101 GWFPDRGRRWFDALQRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTAR 160 Query: 383 ------NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 +A L N S + + + + ++ +SY Sbjct: 161 IGNAADFTQLGQLTIANFANEAGLKPLGDNLFSQ--TPASGAPVVGVPDDPSYGYVKQSY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 V+ +E++ LI +++Y +++K+I D+M Sbjct: 219 LEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 10/41 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A + I NI N + Y R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDL 43 >gi|149912834|ref|ZP_01901368.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] gi|149813240|gb|EDM73066.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 8/205 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + D V QL R S + L I Sbjct: 52 GTVNASDGTVLPTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEVTLPSGQ 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF------NKNFI 387 + T + ++ + G + ++ ++ + Sbjct: 112 SAYTRDGALKRSADGLIVTSDGFSLVPEITIPADVRSISINAAGEVFAYFAETTEAQQIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +AG + L N +LE S + Q + + Y V+ E Sbjct: 172 EITLAGFSNPKGLEAAGNNL--FLETEASGPSLVSTPGQDGLGTLRQGYLEDSSVDPVRE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKML 472 ++ LI+ ++ Y ++ K+I D+ML Sbjct: 230 VTELIEAQRGYELNAKVISAADQML 254 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 54/247 (21%), Gaps = 30/247 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + +I N+ N Y R + Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMSTTGYNTRRAEFSDLHYQQMARPGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + ++ L A + + + + S Sbjct: 63 PTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ--KIRADADKEIELEIS 161 L+ S + L + A+ + N + +A + E+ ++ Sbjct: 117 DGALKRSADGLIVTSDGFSLVPEITIPADVRSISINAAGEVFAYFAETTEAQQIGEITLA 176 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 N+ AS Q + + + S ++ Sbjct: 177 GFSNPKGLEAAGNNLFLETEASGPSLVSTPGQDGLGTLRQGYLEDSSVDPVREVTELIEA 236 Query: 222 SDGTTLF 228 G L Sbjct: 237 QRGYELN 243 >gi|116250482|ref|YP_766320.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. viciae 3841] gi|115255130|emb|CAK06204.1| flgG [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 16/243 (6%), Positives = 44/243 (18%), Gaps = 38/243 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + + R + Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + F ++ + Sbjct: 63 PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + E + + ++ + Sbjct: 114 YSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGSTELTISRSGQVSAKLPGATEATELGQL 173 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + N + AS D+ K + + Sbjct: 174 TLADFVNEAGLQPLGDNL-FQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITE 232 Query: 218 VVY 220 ++ Sbjct: 233 LIS 235 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 87 TQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146 Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +A L N + E S + Sbjct: 147 TELTISRSGQVSAKLPGATEATELGQLTLADFVNEAGLQPLGDNL--FQETPASGEAVIG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253 >gi|260768780|ref|ZP_05877714.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260616810|gb|EEX41995.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315180483|gb|ADT87397.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii NCTC 11218] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 2/185 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V + V F + + + + + + +L Sbjct: 77 TEKVFTQGNINNTSQQFDLAIVGDGFFQIEGPEGEVLYTRNGQFHLNADGAIVNTQGYLL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 V + + L N + E Sbjct: 137 QPEINVPDNATLVTITEDGQVSAVVSGQVEPEQLGEITLVKFMNPSGLTAKGANLLA--E 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + I + T V + EE+ +I +++Y +S K++ D+ML Sbjct: 195 TEASGEAMELVAGTDGAGVIKQGALETSNVQVVEEMVDMISTQRAYEMSAKMVSAADQML 254 Query: 473 QTLLE 477 Q + Sbjct: 255 QYIAN 259 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 10/152 (6%), Positives = 30/152 (19%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + ++ + +I N+ N + + R + Sbjct: 1 MHNALMISKTGMAAQDAKMTAISNNLANVNTVGFKRDRVVFEDLFYSVEKQAGTGTNDLN 60 Query: 47 --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + ++ S + F ++ Sbjct: 61 IHPTGVQLGNGVRVAGTEKVFTQGNINNTSQQFDLAIVGDGFFQIE------GPEGEVLY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + N +L + Sbjct: 115 TRNGQFHLNADGAIVNTQGYLLQPEINVPDNA 146 >gi|288962678|ref|YP_003452972.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914944|dbj|BAI76428.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 4/183 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + + + ++P+ + Sbjct: 80 INTTGNLTSTGNELDLAIEGRGYFNVTQPGGETVYTRAGSFKLSPEGTIVTADGFTVAPG 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG--INTNVTLLEYARNSIGWLEKNR 415 + + + Y D + +A L N + Sbjct: 140 ITVPQGTREVVINRSGEVLAYVDGKTQPVNQGQLAMTVFVNESGLEALGDNL--FRATPA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + Q F I + Y + VN+ +E++ LI +++Y ++ K+I D+M T+ Sbjct: 198 SGEPQEGLAGQAGFGTIRQKYLESSNVNVVQEITELISAQRAYEMNAKVIEAGDQMASTM 257 Query: 476 LEG 478 Sbjct: 258 TNM 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 17/196 (8%), Positives = 34/196 (17%), Gaps = 37/196 (18%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------------- 45 + A I NI N + Y R Sbjct: 4 LSIASTGMMAQQLNVEVISNNIANINTTAYKRSRAEFQDLMYQAEKRQGSQSTDSGTIVP 63 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + N L + + + + + + + + Sbjct: 64 TGVEVGLGVRPTSVNRIN---TTGNLTSTGNELDLAIEGRGYFNVTQ------PGGETVY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + S E + E V+ V ++ Sbjct: 115 TRAGSFKLSPEGTIVTADGFTVAPGITVPQGTREVVINRSGEVLAYVDGKTQPVNQGQLA 174 Query: 159 EISNLRRFLSELTVVN 174 + E N Sbjct: 175 MTVFVNESGLEALGDN 190 >gi|187925759|ref|YP_001897401.1| flagellar basal body rod protein FlgG [Burkholderia phytofirmans PsJN] gi|187716953|gb|ACD18177.1| flagellar basal-body rod protein FlgG [Burkholderia phytofirmans PsJN] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 56/179 (31%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + ++ D + N Q + S Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ + + A+ + E S + Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPNNATSLTIGSDGVVSITVAGSTNSQ 168 >gi|91785632|ref|YP_560838.1| flagellar basal body rod protein FlgG [Burkholderia xenovorans LB400] gi|91689586|gb|ABE32786.1| flgG; flagellar basal-body rod protein [Burkholderia xenovorans LB400] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 56/179 (31%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + ++ D + N Q + S Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ + + A+ + E S + Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + + S + + + + + + Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPNNATSLTIGSDGVVSITVAGSTNSQ 168 >gi|125975104|ref|YP_001039014.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256003242|ref|ZP_05428234.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281418478|ref|ZP_06249497.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125715329|gb|ABN53821.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255992933|gb|EEU03023.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281407562|gb|EFB37821.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939269|gb|ADU73303.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 266 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 55/194 (28%) Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 L +A + + + G IS T N S Sbjct: 73 MATLKNFQSGNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKISVTENGNMLTTS 132 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + + D V ++ L D Y D G+ Sbjct: 133 DGYPVLDESGVEIILDIDISKLNVSSDGELSYTDENGVVVPLGQRIGLVKFPNRNGLESI 192 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + ++I + Y + V + EE+ LI +++Y I++K I Sbjct: 193 GSNFYASTSASGEAVPDEELGKKSNIRQYYLESSNVQVVEEMVKLIVAQRAYEINSKAIQ 252 Query: 467 FTDKMLQTLLEGVK 480 D+ML + Sbjct: 253 SADEMLGIANNLKR 266 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 52/234 (22%), Gaps = 23/234 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + I N+ N + Y + Sbjct: 1 MMRALWTAGSGMTAQQLNVDVIANNLSNVNTTAYKKERLEFKDMLYDTLNRAYILDGEGR 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK----EMMSADDHYNNS 99 + + KN + + F + +++ D Sbjct: 61 PVNLQVGYGTVPMATLKNFQSGNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKI 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + Y + ID ++ V + + + + Sbjct: 121 SVTENGNMLTTSDGYPVLDESGVEIILDIDISKLNVSSDGELSYTDENGVVVPLGQRIGL 180 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + R E N + + + L ++ + Q E + + Sbjct: 181 VKFPNRNGLESIGSNFYASTSASGEAVPDEELGKKSNIRQYYLESSNVQVVEEM 234 >gi|167770195|ref|ZP_02442248.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] gi|167667517|gb|EDS11647.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] Length = 273 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 26/280 (9%), Positives = 76/280 (27%), Gaps = 8/280 (2%) Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258 I+ G+S +V +M + +++ + + + +N + Sbjct: 1 MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFSDLLYTQMWTNTDALVNAG 60 Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 + + + + + +L V + + F Sbjct: 61 GDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLLQTEHPLDMAIKGDGF 120 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 A + + + + I + + + + + + + Sbjct: 121 FAVERANGTTEYTRNGAFDISIEGKSGYLVTSDGSYVLDASGKRIKLDRGDDDQFDLTNL 180 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 D +P E + + K S + + I Sbjct: 181 QDEVGVYIFPNPYGLEPNTGGFRETPISGTPTVIKASSRASRPY--------TIVTGMLE 232 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V+L EE++ +I ++++ S K++ D++ T+ Sbjct: 233 QSAVDLSEEMANIIVSQRAFQFSAKMVQTADEIEDTVNNL 272 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 9/129 (6%), Positives = 30/129 (23%), Gaps = 15/129 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F + Q+ + N+ N + Y + + Sbjct: 1 MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFS---------------DLL 45 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + ++ + + + + E + +R + + Sbjct: 46 YTQMWTNTDALVNAGGDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLL 105 Query: 123 LGKTVIDNA 131 + +D A Sbjct: 106 QTEHPLDMA 114 >gi|261856358|ref|YP_003263641.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] gi|261836827|gb|ACX96594.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + A + F D + S ++ N Q + + Sbjct: 77 ATEKNHTQGNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLDSNGQVVTANGYP 136 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + ++ + + +A L N +L Sbjct: 137 LQPAITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLADFVNPAGLQPIGDNL--FL 194 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + ++ + + VN+ EEL +I+ +++Y +++K I T M Sbjct: 195 ESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIETQRAYEMNSKAISATSSM 254 Query: 472 LQTL 475 LQTL Sbjct: 255 LQTL 258 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/258 (7%), Positives = 64/258 (24%), Gaps = 22/258 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 A+ + + + I N+ N + + + + P Sbjct: 5 ALWIAKTGLDAQQTRMSVISNNLANVNTTGFKQDRAVFEDLIYQNYRQVGAANTQQNEVP 64 Query: 48 ENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHY 103 + + T + KN L ++A+ + F + + + + + S + Sbjct: 65 TGLNIGTGVKVVATEKNHTQGNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLD 124 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + Y + + + A + Q + + Sbjct: 125 SNGQVVTANGYPLQPAITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLADFVNPAG 184 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + + + + + + + + S + + +V Y + Sbjct: 185 LQPIGDNLFLESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIETQRAYEMN 244 Query: 224 GTTLFETVPRDINFEKMN 241 + T + Sbjct: 245 SKAISATSSMLQTLNQNT 262 >gi|302383956|ref|YP_003819779.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] gi|302194584|gb|ADL02156.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 4/177 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDN--KLCQGISETICVNPQYRSNPSFLRDGG 355 I + + I + + ++ Q + + + Sbjct: 80 ITEQGTPTQTGSDYDVAIDGQGYFQITMPSGEIGYTRAGNFSLSGEGQLVTEDGYAVEPA 139 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + +V + +A L N + LE Sbjct: 140 ISIPQDAIDVTISKTGQVQVITAGSPEPAIVGQLELATFFNEAGLEAIGDNLL--LETAA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + F + + Y+ V+ E+S LI +++Y +++K+I D+M+ Sbjct: 198 SGPATTGTPGETGFGQLLQGYTEASNVDAVTEISALIIAQRAYEMNSKVITTADEMM 254 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 26/163 (15%), Gaps = 34/163 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + Y R+ Sbjct: 3 ALRTAASGMAAQQLNVEVISNNIANMNTVGYKRQRAEFQDLIYQNVERMGAQSSSQGTVV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + S Q + + Sbjct: 63 PTGIQVGLGVKAGSVYRITEQGTPTQ---TGSDYDVAIDGQGYFQI------TMPSGEIG 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 S E + + + + + + + Sbjct: 114 YTRAGNFSLSGEGQLVTEDGYAVEPAISIPQDAIDVTISKTGQ 156 >gi|192289142|ref|YP_001989747.1| flagellar hook protein FlgE [Rhodopseudomonas palustris TIE-1] gi|192282891|gb|ACE99271.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris TIE-1] Length = 421 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 44/407 (10%), Positives = 88/407 (21%), Gaps = 12/407 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52 MSL + A + N SQ + I NI N+D Y M + Sbjct: 1 MSLTGALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT +L A S+A F + + + Sbjct: 61 VTVAGRANISQQGLLAATSNATDVAIQGSGFFVVSDQ----TSGGTTSYTRNGAFSIDNA 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y N + G + + V + + + A + + ++ Sbjct: 117 GYLVNSGYYLEGWRTDADGKIVGDASSATLSPINTNVAATSGSATTKTTFAANLPADAAT 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 T Q + + ++ T + Sbjct: 177 GATYSSSMTVYDSLGTANSIQVTWIKTASNAWTASFANPTLSSSTSTTTGTTSGSVSLTF 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + S + +G S+ GK L Q N Sbjct: 237 NSDGSLASTNPSPPTISVSGWTNGAANSTISLDLGTVGKTNGLTQYASGEATPTINVTSI 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + L + + I + Y Sbjct: 297 SSDGLPYGKLSSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAA 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 G + + N +L + D+ ++ + + Sbjct: 357 SGDASVQTSGSNGAGKIYGSELESSTTDTSSQFASMISAQQAYSAAS 403 >gi|241589578|ref|YP_002979603.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|240868290|gb|ACS65949.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 2/173 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 A + F D + + I Q ++ +L + + ++ Sbjct: 91 NATDVAINGNGFFQVQRPDGTLAYTRDGNFQISAQGQLVTSSGYLVQPAMMVPRNATSLM 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + +A L N E S +L + Sbjct: 151 IGKDGVVTVTTPGMVNRTQVGAFQLANFVNPAGLRSLGENLYA--ETEASGGANLAVPGG 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++Y T VN+ EE+ LI+ +++Y I++K + D+ML+ + + Sbjct: 209 NGLGMLHQNYVETSNVNVVEEMIQLIQTQRAYEINSKAVQTADRMLEKIAQLK 261 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 32/147 (21%), Gaps = 27/147 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ ++ Q + N+ N + + R + T Sbjct: 1 MIRSLWISKTGMEAQQTQLDVVSNNLANVNTTGFKRSRAVFEDLLYQNAREPGAQSSQQT 60 Query: 45 ISPENVTVVTQRSENKNM---FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + T L +A F ++ Sbjct: 61 ALPSGMQIGTGTRIVATSRLHSQGNLSKTGNATDVAINGNGFFQVQ------RPDGTLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI 128 + S + S ++ ++ Sbjct: 115 TRDGNFQISAQGQLVTSSGYLVQPAMM 141 >gi|110677663|ref|YP_680670.1| flagellar basal body rod protein FlgG [Roseobacter denitrificans OCh 114] gi|109453779|gb|ABG29984.1| flagellar basal-body rod protein FlgG [Roseobacter denitrificans OCh 114] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Query: 367 NLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ ++ ++ D+ + +AG L N E S + + Sbjct: 150 SINTSGEVFAYFSDATDAELLGQFNLAGFTNAKGLEALGGNLFA--ETEASGAAIVSTPG 207 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + Y + V+ E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 208 EDGLGTVRQGYLESSSVDAVREITELIEAQRGYEMNAKVISAADQMM 254 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 35/173 (20%), Gaps = 28/173 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N Y R Sbjct: 3 ALKIAATGMSAQQMRVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L A + F + + Sbjct: 63 PTGVQLGLGVRPSAVSVQLQQGSLSATGGDLDLAIEGTGFLEV------TLPSGQTAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 L+ E + ++ + + NTS D E+ Sbjct: 117 DGGLKRDAEGLIVTSDGYPVEPEIVIPDDARSISINTSGEVFAYFSDATDAEL 169 >gi|157781876|gb|ABV72264.1| FlgE [Azospirillum brasilense] Length = 297 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 27/299 (9%), Positives = 69/299 (23%), Gaps = 17/299 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54 M + +FN ++ +I NI NA + +T + + Sbjct: 1 MGITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNG 60 Query: 55 QRSE-NKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--------MSADDHYNNSPTHYIS 105 R+ + + F ++++ +A ++ Sbjct: 61 VRAFERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSG 120 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 E N + L +D A + S+ + D ++L Sbjct: 121 DFSPDKEGRLVNGAGKALMGFKLDPASGTGSFGSLSSMTPVSLSGLQDYREASTQASLNL 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 L + + +D+ + + V+ + Sbjct: 181 NLPYDQAPVAGEITTANTTGVVLNMVDKNGADGAMALRFLKTGQAEDGTSTWQVFNAG-- 238 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 + N + T S F ++ + + + + Sbjct: 239 VVGADGKPVGNGNVNDPTTWKSLGTLNFARNGTLTGGPTGSPVTLTLNPGGDFSQTTLD 297 >gi|77463650|ref|YP_353154.1| flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1] gi|126462482|ref|YP_001043596.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|221639493|ref|YP_002525755.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332558506|ref|ZP_08412828.1| FlgG [Rhodobacter sphaeroides WS8N] gi|11095160|gb|AAG29749.1|AF205139_1 flagellar distal rod protein [Rhodobacter sphaeroides] gi|77388068|gb|ABA79253.1| Flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1] gi|126104146|gb|ABN76824.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|221160274|gb|ACM01254.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332276218|gb|EGJ21533.1| FlgG [Rhodobacter sphaeroides WS8N] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 8/161 (4%) Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + + Q TI Y P G+VS + PD Sbjct: 108 MPDGRMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISSDGIVSVLMPDETE 167 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + +A L +E S + + F + + Sbjct: 168 A------QEVGQMTLATFANPRGLQPVGETFA--VETGASGEAVIGNPVEPGFGKLVQGS 219 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 VN+ +EL +I+ +++Y +++K I +D+M+Q L Sbjct: 220 LEASNVNVVQELVDMIETQRAYEVNSKSISASDEMMQYLSN 260 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 33/164 (20%), Gaps = 34/164 (20%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43 MS + A N + I N+ N + + R Sbjct: 1 MS-TNAMHVASTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSE 59 Query: 44 -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + V VV+ L +A+ F + Sbjct: 60 ATAMTSPSAVGTGVRVVSTEKL---YTQGSLANTDNALDLAIDGPGFFQVL------MPD 110 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 + E S ++ + V ++ Sbjct: 111 GRMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISS 154 >gi|295700205|ref|YP_003608098.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295439418|gb|ADG18587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 383 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 20/371 (5%), Positives = 73/371 (19%), Gaps = 6/371 (1%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + + + AS I NI NA + + + + N + ++ Sbjct: 2 SYQTGLSGLHAASNDLDVIGNNIANAHTVGFKQGTAVFSDMYANAMLGATNNQIGIGVAT 61 Query: 66 V---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 Q + + + + + + Sbjct: 62 SAIVRDFSEGTPTQTGNPLDLDIRGNGFFLLSQNGTPVYSRNGQFQQDSDGNIISSGNGL 121 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + VV + + + T Sbjct: 122 PLMGYAEGPNGVVDTSRLVQLTTATVANLPPMPTSAIAWSFNLNAGDDTPKVTPFDPTNN 181 Query: 183 SKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 ++ D + ++ + + T+ ++ + Sbjct: 182 QSYNFATTATTYDSEGNQHQISIYLVKDPATPNQWSAYIAPQGSDVTVDNGTGAPSSYTQ 241 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + + T S + + + + A+ + + + Sbjct: 242 IGTLTFDSSGRLTSSSSLSFEMSMTNGSASPQTIAIDLGNTTQYAATTDSVTRYHPDGYA 301 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + ++ + +G + ++ N + ++ Sbjct: 302 AAAYNGTLSVADDGTITAGYTNGETLVIGQVATATFANPNGLESQSGNLFYATQASGSAQ 361 Query: 360 KFLWNVKNLAG 370 N Sbjct: 362 IGTPGTFNHGA 372 >gi|260431748|ref|ZP_05785719.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] gi|260415576|gb|EEX08835.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] Length = 261 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +A + L N + E S + + + + + Y Sbjct: 164 TAEGQLLGEFTLASFSNAKGLEAIGSNL--FKETEASGAPIVGTPGEDGLGTLRQGYLED 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 33/160 (20%), Gaps = 28/160 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQMARAGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + + L A S + + + + S Sbjct: 63 PTGIQLGLGVRPAAVTVQLAQGALSATGSDLDIAIEGRGYLEV------TLPNGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 L+ S E + + + + N + Sbjct: 117 DGSLKRSAEGLIVTSDGFPVVPEITIPDDARSISINAAGE 156 >gi|78044159|ref|YP_359861.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996274|gb|ABB15173.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] Length = 244 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 15/187 (8%), Positives = 38/187 (20%), Gaps = 9/187 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55 +L + +Q ++ NI N + Y R D + V Sbjct: 1 MLRGIYISATGLKAGLKQLDTVANNIANINTVGY-RADITVNSGFEEKILNYAGKEVGKL 59 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L S F + + + + + Y Sbjct: 60 EYGVNPDIN-YLDLSSGKYVPTGRNLDFALVGNGFFVVETPAGLRYTRAGDFQVNRDGYL 118 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + + + + + + E N Sbjct: 119 CLPNGSRVLGEKGPIKIDNEELYVEKDGRIYNKERSRYIDRLRVVEPVDPVALEKVGGNF 178 Query: 176 AIKFKTA 182 + Sbjct: 179 FVTAANN 185 Score = 39.6 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 6/66 (9%), Positives = 21/66 (31%), Gaps = 3/66 (4%) Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + + + Y V+ E L++ + + + + D++ Sbjct: 176 GNFFVTAANNVRPGNAL---VLQGYLEQSNVDPNREYPALLESLRYLQSNARGLKVQDEL 232 Query: 472 LQTLLE 477 L + Sbjct: 233 LSKAVN 238 >gi|329888226|ref|ZP_08266824.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] gi|328846782|gb|EGF96344.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] Length = 262 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 2/170 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + + + + + T+ Q ++ + + + Sbjct: 87 NRTGNTYDIAIQGKGYFQITLPSGELAYTRAGNFTVNGEGQLVTDDGYAVEPAIAIPQDA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 +V + + + +A L N + LE S + Sbjct: 147 LDVSISKSGQVQVTTAGQTEPQVVGQLELATFFNEAGLEAIGDNLL--LETAASGPATVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +V + ++ + Y+ V+ E++ LI +++Y +++K+I D+ML Sbjct: 205 APGEVGYGNLLQHYTEASNVDAVSEITALIVAQRAYEMNSKVITTADEML 254 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 8/154 (5%), Positives = 23/154 (14%), Gaps = 34/154 (22%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + + R+ Sbjct: 3 ALRTAATGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQNVERMGAQSSSQGTVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + Sbjct: 63 PTGIQIGSGVKAGSVYRITEQ---GSPNRTGNTYDIAIQGKGYFQI------TLPSGELA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + E + + + + Sbjct: 114 YTRAGNFTVNGEGQLVTDDGYAVEPAIAIPQDAL 147 >gi|302671949|ref|YP_003831909.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio proteoclasticus B316] gi|302396422|gb|ADL35327.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio proteoclasticus B316] Length = 276 Score = 64.3 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 70/250 (28%), Gaps = 2/250 (0%) Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 ++N + +S V ++ G+ P L S+ F+ Sbjct: 27 ANVNTAGYKAQGAQFKSLLYQELQTVTTTANGAPKPVTSQVGLGTRVASINQYFKQGSFL 86 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 D G + + L + T+ + + + Sbjct: 87 TNDNPAAMAISGDGFFGYLGSDGTSKYYTRNGNFSWALSEAGGTTLVLTTAEGNKVMDIN 146 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + G I + D+ + + S+ + E Sbjct: 147 GAEITVDGNRVASRITIGGDGKIYYPDDAGVPQDLGKQIGLWQFPNREGLERIGSVAFQE 206 Query: 413 KNRSDSHDLHMKSQVVF--NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 S + + + I + Y VN+ E+ LI +++Y +++ I TD+ Sbjct: 207 TPASGAAINENTAAAGIKKSEIVQGYLEGSNVNVATEMVNLIVAQRAYEMNSTAIQTTDE 266 Query: 471 MLQTLLEGVK 480 M+QT + Sbjct: 267 MMQTANGLKR 276 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 23/136 (16%), Gaps = 25/136 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N +I N+ N + Y + Sbjct: 1 MVRSLWSAATGMNAQQTNVDTISNNLANVNTAGYKAQGAQFKSLLYQELQTVTTTANGAP 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + S N+ + + F + Sbjct: 61 KPVTSQVGLGTRVASINQYFKQGSFLTNDNPAAMAISGDGFFG-----YLGSDGTSKYYT 115 Query: 103 YISKLRDSLESYSKNL 118 +L Sbjct: 116 RNGNFSWALSEAGGTT 131 >gi|296531727|ref|ZP_06894555.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296267943|gb|EFH13742.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 260 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 56/167 (33%) Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 GN ++ DL + + Q + + + ++ Sbjct: 89 TGNRYDLALEGRGYFGIDLPDGTVAYTRDGSFKLSQEGQIVTTEGYPIQPAINVPIDARD 148 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 + + + + A +LE S + + S Sbjct: 149 VTVNQAGEVLVTQANGQQQNAGRLNLFLFPNEAGLEAIGGNKFLETEASGQPNQGLPSDP 208 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + + Y VN+ +E++ LI +++Y +++K+I TD+MLQT Sbjct: 209 GYARVRQGYLEASNVNVVQEITQLIAAQRAYEMNSKVIEATDQMLQT 255 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/169 (8%), Positives = 28/169 (16%), Gaps = 16/169 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMF 63 N A I NI N + RR V + SE + Sbjct: 3 AMNIAATGMQAQQTNVEVIAHNIANVSTTAFTRRKAEFQDLLYQSGERVGSASSEAGTLL 62 Query: 64 --------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + D + Sbjct: 63 PVGTQVGLGVRNSAINRITVQGTLNETGNRYDLALEGRGYFGIDLPDGTVAYTRDGSFKL 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 S E + + + N + + + Sbjct: 123 SQEGQIVTTEGYPIQPAINVPIDARDVTVNQAGEVLVTQANGQQQNAGR 171 >gi|292492365|ref|YP_003527804.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] gi|291580960|gb|ADE15417.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] Length = 261 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 2/177 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + F + D + + + + Q ++ + + Sbjct: 81 FSQGGIAQTENPLDLAIQGRGFFQILMPDGSLAYTRDGTFQVDADGQLVTSSGYPVEPRI 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + +V + + D+ +A L N + E S Sbjct: 141 TIPEGALSVTVGSDGIVSVLVAGDTAPTQLGNVQLADFINPAGLQPIGNNL--FKETASS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + F + + VN+ EEL +I+ +++Y +++K I TD+MLQ Sbjct: 199 GVAQTGIPGLTGFGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAIAGTDEMLQ 255 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 9/159 (5%), Positives = 30/159 (18%), Gaps = 27/159 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + A+ + + A I N+ N + + R + Sbjct: 1 MNQALWIAKTGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R+ + + + + F + + Sbjct: 61 QLPSGLMLGTGVRTVATEKLFSQGGIAQTENPLDLAIQGRGFFQIL------MPDGSLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 + + S + + + + Sbjct: 115 TRDGTFQVDADGQLVTSSGYPVEPRITIPEGALSVTVGS 153 >gi|39933722|ref|NP_945998.1| flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] gi|39647569|emb|CAE26089.1| possible flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] Length = 421 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 44/407 (10%), Positives = 89/407 (21%), Gaps = 12/407 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52 MSL + A + N SQ + I NI N+D Y M + Sbjct: 1 MSLTGALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT +L A S+A F + + + Sbjct: 61 VTVAGRANISQQGLLAATSNATDVAIQGSGFFVVSDQ----TSGGTTSYTRNGAFSIDNA 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y N + G + + V + + + A + + ++ Sbjct: 117 GYLVNSGYYLEGWRTDADGKIVGDASSATLSPINTNVAATSGSATTKTTFAANLPADAAT 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 T Q + + ++ T + Sbjct: 177 GATYSSSMTVYDSLGTANSIQVTWIKTASNAWTASFANPTLSSSTSTTTGTTSGSVSLTF 236 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + S + +G S+ GK L Q N Sbjct: 237 NNDGSLASTNPSPPTISVSGWTNGAANSTISLDLGTVGKTNGLTQYASGEATPTINVTSI 296 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 + L + + I + Y Sbjct: 297 SSDGLPYGKLSSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAA 356 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 G + + N +L + D+ ++ + + Sbjct: 357 SGDASVQTSGSNGAGKIYGSELESSTTDTSSQFASMISAQQAYSAAS 403 >gi|169826609|ref|YP_001696767.1| flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] gi|168991097|gb|ACA38637.1| Flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] Length = 279 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 2/215 (0%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 + + + N+ ++A + G + Sbjct: 67 FGSGAMLGQIKSNQKQGSLQTTNRDLDLAFTKAKQYFNILMPNGENGTETVYTRQGDFYL 126 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + T P + + +V + N L + Sbjct: 127 SPLNNGTVMLVTAEGYPVANAAGQAITLPDNVQGFSVRNGGILEASYPNGDIIRTDLAVT 186 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 P + + + + N L +++ + + + VNL Sbjct: 187 EFQKPQLMEHVSGSYVGLPDNL-AELGFTQAEVLTELVGANRQQIGMQGGTLEMSNVNLS 245 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +E++ LI+ ++SY + + + D+ML L+ G++ Sbjct: 246 KEMTELIQTQRSYQFNARTVTLADQMLG-LINGIR 279 Score = 41.2 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N + +I NI N+ + ++ Sbjct: 1 MLRTMMTATNTMGQLQNKLDTISNNIANSSTTGFKAKEATFNEL 44 >gi|39936961|ref|NP_949237.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris CGA009] gi|192292789|ref|YP_001993394.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris TIE-1] gi|39650818|emb|CAE29341.1| putative flagellar basal-body rod protein flgg (distal rod protein) [Rhodopseudomonas palustris CGA009] gi|192286538|gb|ACF02919.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris TIE-1] Length = 262 Score = 64.3 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 48/181 (26%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + P + + I+ D + + R + Sbjct: 82 TQGTLSPTGNDLDLAVRGEGFFKIQMPDGTFAYTRDGSFTKDNTGRMVTANGNPVQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ + + + ++E S + Sbjct: 142 VPNGATSITVAANGQVSVTISGSTTPTVIGQIGLTRFINKAGLQPQGDNLFIETPASGTP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + S I + V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 202 QDGIASADGLGDIMQKTLEMANVEVVTEISDLISAQRAYEMNAKVVSSADQMLQSTSNMF 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/235 (7%), Positives = 41/235 (17%), Gaps = 38/235 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGVDIGGGVKTVGTPRL---MTQGTLSPTGNDLDLAVRGEGFFKIQ------MPDGTFA 113 Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + V + + Sbjct: 114 YTRDGSFTKDNTGRMVTANGNPVQPTITVPNGATSITVAANGQVSVTISGSTTPTVIGQI 173 Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + + N I + + D D ++QK E+ + + Sbjct: 174 GLTRFINKAGLQPQGDNLFIETPASGTPQDGIASADGLGDIMQKTLEMANVEVVT 228 >gi|115353116|ref|YP_774955.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170703098|ref|ZP_02893918.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171321840|ref|ZP_02910741.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|172061970|ref|YP_001809622.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria MC40-6] gi|115283104|gb|ABI88621.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170131995|gb|EDT00503.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171092878|gb|EDT38130.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|171994487|gb|ACB65406.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MC40-6] Length = 262 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D N + S Q ++ + + Sbjct: 87 TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAITVPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + S +A L N E S + ++ Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVA 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA+ + + Q ++A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVA 204 >gi|269866427|ref|XP_002652270.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] gi|220062840|gb|EED41785.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] Length = 140 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 32/137 (23%), Gaps = 16/137 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56 FN + A++Q NI N + + T + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 57 -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + ++ ++ + F K + + R + Y Sbjct: 62 AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLE------YTRSGAFRADKDGYI 115 Query: 116 KNLSEDILGKTVIDNAE 132 N + + + + Sbjct: 116 TNNTGTSRLQGYAADDD 132 >gi|304321133|ref|YP_003854776.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] gi|303300035|gb|ADM09634.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] Length = 251 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYAR 405 N ++ ++ ++ + D+ ++ + L Sbjct: 120 NSDGFALADGITIPREARQVTISADGEVFAFFDDAVEGQSIGTITLTSFVNPKGLEAMGG 179 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + E S + Q + + Y GV++ E++ LI+ ++ Y +++K++ Sbjct: 180 NL--YRETTASGTPINGQPGQDGLGLLRQGYLEESGVDVVSEIADLIEAQRGYELNSKVL 237 Query: 466 MFTDKML 472 D+M Sbjct: 238 TAADEMY 244 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 33/170 (19%), Gaps = 28/170 (16%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVT--- 51 + I NI N Y R + P V Sbjct: 1 MAAQQTRVDVIANNIANMSTTAYAARSAVFADLIYRQDVNPGAISSTQGTIVPTGVQLGL 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 V ++ + +M L ++ + F + K Sbjct: 61 GVQTQAVSMDMRQGALRQTTNDLDIAIEGNGFFEI------TLPNGEPAFSRDGKFEVDP 114 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N L + E + + + I+ Sbjct: 115 DGLMVNSDGFALADGITIPREARQVTISADGEVFAFFDDAVEGQSIGTIT 164 >gi|315301942|ref|ZP_07872943.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] gi|313629684|gb|EFR97816.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] Length = 342 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 2/135 (1%) Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + Y D VA + L++ Sbjct: 210 GTNQVFSPTSDGKGAATVKDYAITDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 269 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 ++ S + Q IS S V+L E L+ + + + K+I Sbjct: 270 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVI 327 Query: 466 MFTDKMLQTLLEGVK 480 D +++ ++ ++ Sbjct: 328 RVADDVMKQIVNLIQ 342 >gi|330818583|ref|YP_004362288.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] gi|327370976|gb|AEA62332.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] Length = 262 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 2/170 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S Q ++ + + ++ Sbjct: 94 DIAIDGSGFFQVLMPDGTTAYTRDGSFHPNNQGQLVTSSGYQVLPAITVPQNAQSLTIGT 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L +N E S ++ Sbjct: 154 DGVVTVTQPGSTNAVQIGAMQIATFINPEGLQALGQNLFA--ETTSSGVPNVTTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 212 GSLNQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/175 (6%), Positives = 25/175 (14%), Gaps = 33/175 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGALTQTGNSRDIAIDGSGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 + + + S + + T + Sbjct: 112 TAYTRDGSFHPNNQGQLVTSSGYQVLPAITVPQNAQSLTIGTDGVVTVTQPGSTN 166 >gi|90423017|ref|YP_531387.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90105031|gb|ABD87068.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 18/181 (9%), Positives = 48/181 (26%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + I+ D + + R S Sbjct: 82 TQGTLSTTGNDLDLAVRGEGFFKIQMPDGTYSYTRDGSFTTDNTGRVVTSNGNPLQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ + ++ + ++E S Sbjct: 142 IPTGASGITIASNGQVSVTVTGSTTPTVLGQISLTRFINKTGLQPQGDNLFIETGASGPP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + I + V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 202 QDGIANADGYGDIQQQTLEQANVEVVTEISDLIAAQRAYEMNAKVVSAADQMLQSTSNMF 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 38/235 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQRAAFQDLIYDHVRRVGAQASDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGVDIGGGVKTVGTPRL---MTQGTLSTTGNDLDLAVRGEGFFKIQ------MPDGTYS 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L T+ ++ + + + +I Sbjct: 114 YTRDGSFTTDNTGRVVTSNGNPLQPTITIPTGASGITIASNGQVSVTVTGSTTPTVLGQI 173 Query: 161 S---NLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 S + + + N I + D D + Q+ E + + Sbjct: 174 SLTRFINKTGLQPQGDNLFIETGASGPPQDGIANADGYGDIQQQTLEQANVEVVT 228 >gi|39936993|ref|NP_949269.1| flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] gi|192292821|ref|YP_001993426.1| hypothetical protein Rpal_4455 [Rhodopseudomonas palustris TIE-1] gi|39650850|emb|CAE29373.1| probable flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] gi|192286570|gb|ACF02951.1| protein of unknown function DUF1078 domain protein [Rhodopseudomonas palustris TIE-1] Length = 598 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 28/404 (6%), Positives = 93/404 (23%), Gaps = 26/404 (6%) Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + T A ++ + ++ + N Sbjct: 195 RAADFATNPQVLGTTPPPFSDNSKTGLQINNKQGVPITGATKLSGVAGSDSIGVDFAVGN 254 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + A+ + + IS ST+ + + Sbjct: 255 TITVNGTAITFTASGGTDDATHIPIDSTIANLLSKIDAISAGGAASTVTSGAVVLHTGVA 314 Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + V G V + + + + D Sbjct: 315 SDLAMTSGAAAFASLGLTSPVNVVRNGGGSVGTGKVTGVDNQTFLDESVSGGSTTAYDGN 374 Query: 283 VPIFQNQLDE-------MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 Q + ++ + N+ + Q Sbjct: 375 GAPVNVQFRWAKVDSATLGTGHTDVWNLFYQVNPNATGTQTAWQNVNTNFTFASNGQMSP 434 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + +++ + ++ + + ++ Sbjct: 435 VIGQITLTGLTVSGVSLGDVTMAFGTGGLTQFSDTNGNVQVNQLQQDGYSAGQLVSVSVS 494 Query: 396 TNVTLLEYARNS----IGWLEKNRSDSHDLHMKSQVVFNHISESY--------------- 436 + ++ N + + + + ++ I+ Sbjct: 495 NDGRVVGAYSNGRNIDLAEVSVATFNGANFLKRTDGGAFEITNESGQPLYGKGGSVSGSS 554 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ +E + LI +Q+Y+ + K+I + M+Q LL ++ Sbjct: 555 LESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 598 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 49/456 (10%), Positives = 106/456 (23%), Gaps = 17/456 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + S +I NI N+ + R DT Q + + Sbjct: 1 MGIFGALTTSVAGLRSNSYALENISGNIANSQTTAFKRIDTSFLDLIPQAGNNQQLAGSV 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109 ++ + ++ + E Sbjct: 61 TAGSRLTNTTQGSVQSASVSTYMAINGEGFFVVQKPSSFSDNNPIFPGVDNFTRRGDFSL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 Y N + L ID + + Q + ++ Sbjct: 121 DKNGYLVNGAGYYLEGVKIDPTTGNPVGGSPGVLKFQNDFLPSQATTKISYRANLASYPL 180 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 T + +I + Q + + NN V T Sbjct: 181 TTKHDKSIPGSELLRAADFATNPQVLGTTPPPFSDNSKTGLQINNKQGVPITGATKLSGV 240 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-VVPIFQN 288 I + T+T I + + I LL D+ + Sbjct: 241 AGSDSIGVDFAVGNTITVNGTAITFTASGGTDDATHIPIDSTIANLLSKIDAISAGGAAS 300 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + A VL + + + L + + + N + + Sbjct: 301 TVTSGAVVLHTGVASDLAMTSGAAAFASLGLTSPVNVVRNGGGSVGTGKVTGVDNQTFLD 360 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + G + + N+ ++ +++ +N N T Sbjct: 361 ESVSGGSTTAYDGNGAPVNVQFRWAKVDSATLGTGHTDVWNLFYQVNPNAT-----GTQT 415 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 W N + + + + V I+ + GV+L Sbjct: 416 AWQNVNTNFTFASNGQMSPVIGQITLTGLTVSGVSL 451 >gi|238028847|ref|YP_002913078.1| flagellar basal body rod protein FlgG [Burkholderia glumae BGR1] gi|237878041|gb|ACR30374.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1] Length = 262 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 58/170 (34%), Gaps = 2/170 (1%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 + F + D + S Q ++ + + ++ A Sbjct: 94 DVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQLVTSAGYQVLPAITVPQNAQSLTIGA 153 Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + + +A L +N E S + ++ Sbjct: 154 DGVVTVTQPGSTNAVQIGSMQLATFINPEGLNALGQNLFA--ETTSSGAPNVTTPGLNGA 211 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y + VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 212 GSLNQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 31/143 (21%), Gaps = 7/143 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A N Q I N+ N + + ++ + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLY-------QTVRQPG 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + Q A + + + + + ++ Sbjct: 54 ANSTQQTELPSGLQLGTGVQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTA 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREV 145 + A Q ++ +V Sbjct: 114 YTRDGSFQANNQGQLVTSAGYQV 136 >gi|154687758|ref|YP_001422919.1| FlhP [Bacillus amyloliquefaciens FZB42] gi|154353609|gb|ABS75688.1| FlhP [Bacillus amyloliquefaciens FZB42] Length = 273 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 2/136 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 NP +G + ++ L + +N L Sbjct: 140 GGNPILDENGQPIQIDSSLTQLKISKTGTLTASDQAGTRSQTFNLGIVNVNNPQALHAEG 199 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N S +L ++ + + V++ +E++ LI ++SY ++++ Sbjct: 200 DNLFSVNGAGASAIEELTGANRQAIG-MEQGALEGSNVDMSKEMTGLIVSQRSYQLNSRT 258 Query: 465 IMFTDKMLQTLLEGVK 480 I D+ML L+ V+ Sbjct: 259 ITLGDQMLG-LINSVR 273 Score = 41.6 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A + QQ ++ N+ N+D Y RD+ + Sbjct: 1 MLRSMLTASTALHQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL 44 >gi|107023951|ref|YP_622278.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia AU 1054] gi|105894140|gb|ABF77305.1| Flagellar basal-body rod FlgG [Burkholderia cenocepacia AU 1054] Length = 262 Score = 63.9 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D N + S Q ++ + + Sbjct: 87 TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + S +A L N E S + ++ Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPTGLEAKGENLFA--ETTSSGAPNVS 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAAAGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA+ + + Q ++A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PTGLEAKGENLFAETTSSGAPNVS 204 >gi|312115249|ref|YP_004012845.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] gi|311220378|gb|ADP71746.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] Length = 261 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 2/157 (1%) Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + L P S++ + + Sbjct: 102 WFQITGANNETLYTRAGTFSKNASGQLVTPDGYTVIPSITIPTNTTSIQVNTDGTVYVDP 161 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 +A + L N + E S S + + + + + Y Sbjct: 162 GTGVMAQVGQLTIATFVNDAGLEALGNNL--FRETISSGSAQVQVPGSEGYATVQQYYVE 219 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + V+ +E++ LI +++Y +++K+I D+M Q L Sbjct: 220 SSNVDPVQEITNLISAQRNYEMNSKVIQAADEMFQVL 256 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 28/171 (16%), Gaps = 16/171 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------------- 50 + A I NI NA+ + R Sbjct: 3 ALSVAATGMVAQQTNVEVIANNIANANTVAFKRSRAEFADLLYQSERAAGVPNRSDADAI 62 Query: 51 -TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + LH S L + N + Sbjct: 63 PEASQIGLGVQPVAIRSLHTQGSLTKTGNSLDLALNGRGWFQITGANNETLYTRAGTFSK 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + ++ NT ++ Sbjct: 123 NASGQLVTPDGYTVIPSITIPTNTTSIQVNTDGTVYVDPGTGVMAQVGQLT 173 >gi|56695100|ref|YP_165447.1| flagellar basal body rod protein FlgG [Ruegeria pomeroyi DSS-3] gi|56676837|gb|AAV93503.1| flagellar basal-body rod protein FlgG [Ruegeria pomeroyi DSS-3] Length = 261 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +AG L N + E S S + + + Y Sbjct: 164 AAEGQLLGQVTLAGFTNAKGLEAIGSNL--FKETEASGSPITGNPGEDGLGTLRQGYLED 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/178 (8%), Positives = 42/178 (23%), Gaps = 28/178 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQIARAGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + ++ L A + + + + + S Sbjct: 63 PTGVQLGLGVRPAAVTVHLEQGALSATGNDLDLAIEGRGYFEV------TLPSGQSAFTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 L+ S E + + ++ + N + A+ ++ +++ Sbjct: 117 DGSLKRSAEGLIVTSDGLSVVPEITIPSDARSISINAAGEVYAYFDDAAEGQLLGQVT 174 >gi|34497161|ref|NP_901376.1| flagellar basal body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34103018|gb|AAQ59381.1| flagellar basal-body rod protein flgG [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A LL N + + + S + + + V + EE+ Sbjct: 173 IQLASFINPAGLLALGDNL--FQKTDASGDANPGDPGNGALGKLKQGSLEGSNVQVVEEM 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +I +++Y ++ K++ D MLQ L + V+ Sbjct: 231 VDMIAAQRTYEMNTKVLSAADNMLQQLGQSVR 262 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 13/162 (8%), Positives = 40/162 (24%), Gaps = 27/162 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + ++ + +I N+ N + + R + Sbjct: 1 MNPALWISKTGIQAQDARLTAIANNLANVNTTGFKRDRMIFEDLFYQVEKQPGSKVDDNN 60 Query: 46 -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP V + + + + + ++ + Q F + + Sbjct: 61 VSPSGVQMGNGTRLVGSQKVFTEGNITTTNQSLDVAIIGQGFLQV------KMANGETGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 +L S + + L + A+ + + + Sbjct: 115 TRAGQLSLSKDGVLQTAQGLPLEPEIRIPADATKISISETGE 156 >gi|254473318|ref|ZP_05086715.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211957434|gb|EEA92637.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 59/208 (28%), Gaps = 2/208 (0%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + + + + + + + D + + Sbjct: 57 GGAAPVPEGIQQGLGVKTAAIRELHSKGPLNHTTNTFDLAIDGQGWFEVVGPDGEALYTR 116 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + + + + G + + + + + Sbjct: 117 AGAFNVNGEGALVTLDGYEVQPGITVPIDAVKITVNESGEVFATYADGNPATSIGQLSLT 176 Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 + L N + E S + + + + I + Y V+ +E++ LI Sbjct: 177 SFVNDAGLRAIGGNL--FRETEASGAPNTGIAGEGPLGVIRQGYLEGANVDPVKEITSLI 234 Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ Y +++K+I D M T+ +G++ Sbjct: 235 SAQRGYEMNSKVIQAADDMAGTVSKGIR 262 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + + I NI N + + + Sbjct: 3 ALAIAATGMSAQQKNLEVISNNIANMNTTAFKASRAEFSDLLYQMDRAAGVSNRGGAAPV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R + L+ ++ Q + + + Sbjct: 63 PEGIQQGLGVKTAAIRELHSK---GPLNHTTNTFDLAIDGQGWFEVV------GPDGEAL 113 Query: 101 THYISKLRDSLESYSKNLSED 121 + E L Sbjct: 114 YTRAGAFNVNGEGALVTLDGY 134 >gi|27380939|ref|NP_772468.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27354105|dbj|BAC51093.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 50/183 (27%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + I D T ++ Q R + Sbjct: 80 SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTFQYTRDGTFQMDNQGRVVTAQGNPVQPT 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + + + E S Sbjct: 140 ITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQLGLTRFINKAGLQPVGNNQFTETPSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + I++ V++ E+S LI +++Y ++ K+I D+M+Q+ Sbjct: 200 PPQDGTANTEGYGKITQGSLEQANVDVVSEMSDLIAAQRAYEMNAKVISAADQMMQSTTA 259 Query: 478 GVK 480 + Sbjct: 260 LFR 262 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 16/241 (6%), Positives = 46/241 (19%), Gaps = 36/241 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N + ++ Sbjct: 3 ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQASDQGTIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V +M L + + + F + Sbjct: 63 PVGVDIGGGVKTVGTPR---SMTQGTLSQTGNDLDLAISGEGFFKIL------MPDGTFQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE- 159 + + + + T+ N + + + ++ + Sbjct: 114 YTRDGTFQMDNQGRVVTAQGNPVQPTITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQL 173 Query: 160 -ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 ++ V N+ +S + + + V + + Sbjct: 174 GLTRFINKAGLQPVGNNQFTETPSSGPPQDGTANTEGYGKITQGSLEQANVDVVSEMSDL 233 Query: 219 V 219 + Sbjct: 234 I 234 >gi|167585196|ref|ZP_02377584.1| flagellar basal-body rod protein FlgG [Burkholderia ubonensis Bu] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 2/182 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 ++ + + F + D N + S Q ++ + Sbjct: 82 TQGSLQQTGNSKDLAIDGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + + + +A L N E S Sbjct: 142 VPQNATALTIGKDGVVSVKQAGSNNAVQIGSIQIATFINPAGLEAKGENLFA--ETTSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQ + + Sbjct: 200 APNVSQPGLNGAGSLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQNVTQ 259 Query: 478 GV 479 Sbjct: 260 MK 261 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 12/157 (7%), Positives = 24/157 (15%), Gaps = 33/157 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A N Q I N+ N Y + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGYKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V L ++ F + Sbjct: 61 ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDLAIDGAGFFQVL------MPDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135 + + + + S + + Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNATA 148 >gi|83716996|ref|YP_438391.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167614839|ref|ZP_02383474.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257141424|ref|ZP_05589686.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83650821|gb|ABC34885.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + + + FI + + + + +I + Sbjct: 77 TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + ++ S +A LL N ++E Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + VF I + V + EE+ +I +++Y ++ K++ D ML Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGANVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254 Query: 473 QTLLEGVK 480 Q L + + Sbjct: 255 QQLSQAAR 262 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 33/143 (23%), Gaps = 27/143 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + ++ + +I N+ N + + R + Sbjct: 1 MNQAMWISKTGLQAQDAKLQAIANNLANVNTIGFKRDRVVFEDLFYRIERQPGAQLDQDN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 SP + + + D + ++ + + F + + Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILG 124 +L + E N L Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137 >gi|301168505|emb|CBW28095.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 261 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 69/205 (33%), Gaps = 9/205 (4%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + V + + + ++ + + + + + D Sbjct: 65 GVQIGSGAKVSGVRKEFTQGSQQITNNPYDLMISGEGFFG-IMMPNNEVRYTRDGSFSVD 123 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 S T+ YR PSF+ G+ S + A + I F F G Sbjct: 124 ASGTLVNKQGYRVFPSFVFPPGTKSVHIAHDGTVEAYLSNQIEPTILGQIPVFTFINPVG 183 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + + S ++ I++ + V++ E++ LIK Sbjct: 184 LKSTG--------MNLYTITRSSGQAIQNIAGNANAGTIAQGALESSNVSIMNEMTSLIK 235 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478 +++Y +++K++ D+MLQT+ Sbjct: 236 AQRAYEMNSKVMGVADQMLQTVNNI 260 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 28/94 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L N A ++I NI N + Y ++ T + + Sbjct: 1 MLRALNTAATGMAAQEMNVSTISNNIANVNTTGYKKQRTEIQDLSYQTIQEAGSRSSADT 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + V S + + F + ++ + + Sbjct: 61 MNNVGVQIGSGAKVSGVRKEFTQGSQQITNNPYD 94 >gi|118588711|ref|ZP_01546119.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118438697|gb|EAV45330.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 260 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/208 (10%), Positives = 60/208 (28%), Gaps = 3/208 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + Q+ ++ + L I + Sbjct: 52 GTETSDSGTIVPTGIQIGSGVKIAATGRIMSQGSLEQTGKELDLAIRGEGFFQIDMPDGT 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + T + + +N + G + + + ++ + Sbjct: 112 TAYTRDGSFERDANGQLVTIDGYSVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQ 171 Query: 394 INTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 I + + +IG LE + S + + + + + + V+ E++ Sbjct: 172 IQLARFVNKAGLEAIGDNLYLETDASGAPETSNPGDESYGTVQQYFLEMANVDAVTEIAD 231 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI +++Y +++++I D+M T Sbjct: 232 LISAQRAYEMNSQIIQAADEMYSTTTNL 259 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/255 (7%), Positives = 52/255 (20%), Gaps = 22/255 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50 + A I N+ N + ++ + S V Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGFKKQRADFQDLLYQNLRRMGTETSDSGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q + ++ Q E D + Sbjct: 63 PTGIQIGSGVKIAATGRIMSQGSLEQTGKELDLAIRGEGFFQIDMPDGTTAYTRDGSFER 122 Query: 110 SLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + T+ ++V + + V + + + Sbjct: 123 DANGQLVTIDGYSVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQIQLARFVNKAG 182 Query: 168 SELTVVNDAIKFKTASKHDAHDFLD----QRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 E N ++ + + + D +++ + ++ I + Y + Sbjct: 183 LEAIGDNLYLETDASGAPETSNPGDESYGTVQQYFLEMANVDAVTEIADLISAQRAYEMN 242 Query: 224 GTTLFETVPRDINFE 238 + Sbjct: 243 SQIIQAADEMYSTTT 257 >gi|225377358|ref|ZP_03754579.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM 16841] gi|225210783|gb|EEG93137.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM 16841] Length = 271 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 27/273 (9%), Positives = 71/273 (26%), Gaps = 8/273 (2%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + D + F+ + + I + + Sbjct: 6 YTAASGMRAQQTNVDNISNNIANVNTTAFKSQKTEFKSLLYQTIQTRTTSANGEEKPIGA 65 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + DE + + G + + Sbjct: 66 QVGLGTRVASNTTSYTQGALLEDESKSAFAIEGNGFFQVRGADGTTYYTRNGNFNWSIGP 125 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + N L + + K + + Y + + + Sbjct: 126 TGTTLTNTDGYPVLDSNGNTIVLPNNVNSGKAVVTTDGQVGYYNNAGAYVSMNRT----- 180 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV-FNHISESYSNTVGVNLQEE 447 ++ N L + N + N S + + + + I + Y V + +E Sbjct: 181 IGLSQFNNPAGLEKAGSNLL--RATNASGAALNEATNANLTRSKIHQGYLEGSNVQVADE 238 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + LI +++Y +++K I +D ML+ + Sbjct: 239 MVNLIVAQRAYQLNSKAITTSDDMLEQANNLKR 271 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ A + +I NI N + + + T Sbjct: 1 MMRALYTAASGMRAQQTNVDNISNNIANVNTTAFKSQKTEFKSL 44 >gi|206558970|ref|YP_002229730.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia J2315] gi|198035007|emb|CAR50879.1| flagellar basal-body rod protein FlgG (distal rod protein) [Burkholderia cenocepacia J2315] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D N + S Q ++ + + Sbjct: 87 TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + S +A L N E S + ++ Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVS 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA+ + + Q ++A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204 >gi|163852464|ref|YP_001640507.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218531220|ref|YP_002422036.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240139801|ref|YP_002964278.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254562216|ref|YP_003069311.1| cell-distal portion of basal-body rod biosynthesis protein [Methylobacterium extorquens DM4] gi|163664069|gb|ABY31436.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218523523|gb|ACK84108.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240009775|gb|ACS41001.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254269494|emb|CAX25460.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens DM4] Length = 263 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 60/189 (31%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 AR + + + + D + S + Q + +L Sbjct: 76 STARAMSQGPLAQTEKDYDVAIRGEGLFRVRLPDGRTAYSRDGSFDLDAQGQMVTRDGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D G +V A + + +A V L N ++ Sbjct: 136 LDPGVTVPNTATSVTISATGAVQATMPGQTAPQALGQFQLARFVNKVGLESIGDNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + F ++ + Y VN E+S LI +++Y +++K++ D+M Sbjct: 194 ETAASGPAITGLPGSEGFGNLQQRYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQM 253 Query: 472 LQTLLEGVK 480 L T + + Sbjct: 254 LSTTSQMFR 262 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 46/190 (24%), Gaps = 18/190 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A I NI N Y R+ ++ Sbjct: 3 ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQ---------------DLLYQN 47 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + SS Q +L + AL + + L + + Y + + L + Sbjct: 48 LRRSGSSTSDQNTMLPAGLALGS---GVKTTSTARAMSQGPLAQTEKDYDVAIRGEGLFR 104 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + Q D + + + +T+ T Sbjct: 105 VRLPDGRTAYSRDGSFDLDAQGQMVTRDGYLLDPGVTVPNTATSVTISATGAVQATMPGQ 164 Query: 186 DAHDFLDQRD 195 A L Q Sbjct: 165 TAPQALGQFQ 174 >gi|116691038|ref|YP_836661.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|170734372|ref|YP_001766319.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|254246967|ref|ZP_04940288.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|116649127|gb|ABK09768.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|124871743|gb|EAY63459.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|169817614|gb|ACA92197.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 262 Score = 63.9 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D N + S Q ++ + + Sbjct: 87 TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + S +A L N E S + ++ Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPTGLEAKGENLFA--ETTSSGAPNVS 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 50.8 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA+ + + Q ++A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PTGLEAKGENLFAETTSSGAPNVS 204 >gi|241203106|ref|YP_002974202.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856996|gb|ACS54663.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 262 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 16/243 (6%), Positives = 43/243 (17%), Gaps = 38/243 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + + R + Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + F ++ + Sbjct: 63 PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + + E + ++ + Sbjct: 114 YSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGSTELTISRSGQVTAKLPGATEATELGQL 173 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + N + AS D+ K + + Sbjct: 174 TLADFVNEAGLQPLGDNL-FQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITE 232 Query: 218 VVY 220 ++ Sbjct: 233 LIS 235 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 49/169 (28%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 87 TQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146 Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + +A L N + E S + Sbjct: 147 TELTISRSGQVTAKLPGATEATELGQLTLADFVNEAGLQPLGDNL--FQETPASGEAVIG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253 >gi|222084865|ref|YP_002543394.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722313|gb|ACM25469.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 262 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 2/185 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 Q + + I + + V + + D + S Q + Sbjct: 73 QTTAVRNIQIQGELSQTSNDLDVALVGRGWFQIQMPDGTTAYTRAGSFNKSDTGQMVTPD 132 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + G NV + +A L N Sbjct: 133 GNVLQPGITIPSNASNVVINQSGQVSATIGTATTPTVLGQLQIANFVNEAGLQPMGSNLF 192 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 S + ++ F ++ + Y + V+ +E++ LI +++Y +++K+I Sbjct: 193 TQ--TPASGDPVVSDPNENGFAYMKQGYLESSNVDPVKEITDLITAQRAYEMNSKVITTA 250 Query: 469 DKMLQ 473 D M Q Sbjct: 251 DDMAQ 255 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 36/184 (19%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + Y R + Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGYKRSRAEFSDLLYQTERAKGIANRPNQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ L S+ + + + + ++ + Sbjct: 63 PEGANIGLGVQTTAVRNIQ---IQGELSQTSNDLDVALVGRGWFQIQ------MPDGTTA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 S ++L + + N S + I + ++ Sbjct: 114 YTRAGSFNKSDTGQMVTPDGNVLQPGITIPSNASNVVINQSGQVSATIGTATTPTVLGQL 173 Query: 161 SNLR 164 Sbjct: 174 QIAN 177 >gi|119953092|ref|YP_945301.1| flagellar basal body rod protein FlgC [Borrelia turicatae 91E135] gi|119861863|gb|AAX17631.1| flagellar basal-body rod protein FlgC [Borrelia turicatae 91E135] Length = 152 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 25/82 (30%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT---------- 44 M L + N A + I NI N + +Y R+ + + Sbjct: 1 MGLFSSINTAATGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRIVFSPRVVSPYWKG 60 Query: 45 ---------ISPENVTVVTQRS 57 + V V Sbjct: 61 PFVPDYLDNGIGQGVRVAGIER 82 Score = 41.6 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN EE+ +I ++Y ++ +I + + ++ L ++ Sbjct: 106 GYVEFPNVNAVEEMVDMISASRAYEANSTVINSSKAIFRSALSILQ 151 >gi|15887898|ref|NP_353579.1| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens str. C58] gi|20141428|sp|Q44338|FLGG_AGRT5 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15155490|gb|AAK86364.1| flagellar basal-body rod protein [Agrobacterium tumefaciens str. C58] Length = 262 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 21/242 (8%), Positives = 52/242 (21%), Gaps = 36/242 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + Y R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ + L + + + Q + ++ ++ Sbjct: 63 PEGANIGLGVQTSAVRNIH---TQGNLIETGNKLDVAIIGQGWFQIE------AADGSTL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + + + + + +I AD ++ Sbjct: 114 YSRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTARIGNAADFTQLGQL 173 Query: 161 SNLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + ++ AS D K S + G + + Sbjct: 174 TIANFANEAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDL 233 Query: 219 VY 220 + Sbjct: 234 IT 235 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 2/118 (1%) Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 ++ + +A L N Sbjct: 138 PNINIPTDAQDITITRTGQVTARIGNAADFTQLGQLTIANFANEAGLKPLGDNLFSQ--T 195 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + + + ++ +SY V+ +E++ LI +++Y +++K+I D+M Sbjct: 196 PASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253 >gi|294084416|ref|YP_003551174.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] gi|292663989|gb|ADE39090.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] Length = 262 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 61/199 (30%), Gaps = 2/199 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 A + + ++ +++ + + + F + D + Sbjct: 59 ADTDLTSAFAVGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVLLPDGQIGYTRN 118 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 S + + ++ + + + +N +A Sbjct: 119 GSFSTNAEGTLTTPSGYVLQPEIQIPGNASQINISGDGIVSVIVAGEIEPQNVGQMTIAD 178 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L + +E S + + + F + + VN+ +EL +I+ Sbjct: 179 FNNRRGLQPIGESFS--IETAASGAAIIANPQEQGFGKLVQGSLEASNVNVVQELVNMIE 236 Query: 454 VEQSYNISNKLIMFTDKML 472 +++Y +S+K I D+ML Sbjct: 237 TQRAYEVSSKSITSVDEML 255 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 31/154 (20%), Gaps = 28/154 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51 MS + + A+ N + I N+ N + + R V Sbjct: 1 MS-TSSMHVAKTGLNAQQTRMQVIANNLANVNTTGFKRDRANFETLLYQVRRSAGEETSA 59 Query: 52 ---------VVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V T M + +++ F + Sbjct: 60 DTDLTSAFAVGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVL------LPDGQI 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + E S +L + Sbjct: 114 GYTRNGSFSTNAEGTLTTPSGYVLQPEIQIPGNA 147 >gi|171321213|ref|ZP_02910183.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171093523|gb|EDT38693.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 258 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 55/226 (24%), Gaps = 27/226 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 + +F + +NI N + + R + + + R EN Sbjct: 1 MNNLFYIGATGLAAQQTAVDTTAQNIANLNTPAFKRGAVTFSTLLSSGALPGARQENAAP 60 Query: 62 ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 L + F L D N Sbjct: 61 AGIAGGAGVTASARPVFSPGTLRQTDDTWDLAIRSEGFVEL------DAPDGNIMLWRGG 114 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD----KEIELEIS 161 +LR + Y + + L + + + + I A IE+ + Sbjct: 115 RLRVGDDGYLRASNGVPLKAAISVPRDAERLEIAPDGKVLAMIPNQAAPLEVGRIEIAQA 174 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 R L L I + A+ + D L Q SE + Sbjct: 175 TDPRALQPLGDGTYRIADEGAAVIRSRPGEDNAGTLAQGFSEASNV 220 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + +++ +S V L +EL+ L+ +++Y S KL+ D+++ Sbjct: 191 ADEGAAVIRSRPGEDNAGTLAQGFSEASNVALADELAGLMLYQRAYAASAKLVQAGDELM 250 Query: 473 QTLLEGVK 480 + Sbjct: 251 AIANGLKR 258 >gi|224436455|ref|ZP_03657469.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313142967|ref|ZP_07805160.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313127998|gb|EFR45615.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 745 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 38/360 (10%), Positives = 96/360 (26%), Gaps = 18/360 (5%) Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188 ++ + KI + ++ + S + Sbjct: 396 QWSDNTTYLEGDVVQSDDKIYRRINAAGNNPLNEGNWEELGSVESALPPSYTKGSTYQVD 455 Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248 D + L +K+ + + N + + F +P N Sbjct: 456 DVVSYEGKLYRKMVDSGSSDPKLDNIGWQEIRGDSFFSEFIQMPSYQT----NVEIYDES 511 Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 + G+ + IK ++R +V Q+ ++ + E D Sbjct: 512 GKKFLVQSHYFMVQSGNPESEPPIKEKWEVRSAVFD--QHGEIMISPDYVTHNIEFDSDG 569 Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 S L D + + + + V + L + + Sbjct: 570 KPSAEPIELNFGDKSLTYNIAGAKDMQSSNFVYR----DSGILGKDQDGRAEGHLRDVRI 625 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS-------IGWLEKNRSDSHDL 421 + + + + +A + L + N + S L Sbjct: 626 DKDGIIFLAFDNGAYEPMGRVGIAAFVNDQGLRKVGGNLFEMTEMVVNGDASTISGKPIL 685 Query: 422 HMKSQVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + F + + T V++ L+ LI +++ Y+++ K D +++ L + Sbjct: 686 GWEGLNLKFGSVLYKHLETSNVDVGNALTELIVMQRGYSMNAKAFTTGDDLVKEALNLKR 745 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 54/211 (25%), Gaps = 29/211 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + + SI NI N + Y R + + +++ Sbjct: 1 MNSTLINSYSGIKTHQFGLDSISNNIANVNTIGYRRNIPQFESLFS-TNMDSLNADSPIN 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMS------------------------ADDHYNN 98 D A S+ S++A + + Sbjct: 60 NDMNYGATKSSNAISTRSGSYKASDGEFNVAYEGKGWFVVGEQKSGSFEIKDDGYEKKQK 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + E Y N S + + ++ ++ + ++I A +L Sbjct: 120 NYFTRDGSFLRDGEGYIVNTSGYYMYGVDLGKIKD----GIYTSSKSEEIDFAALSSGKL 175 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + + L V+ + + + Sbjct: 176 QPMQVPQNLYYHPVLTTKLDVSANLNKNENA 206 >gi|116626490|ref|YP_828646.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] gi|116229652|gb|ABJ88361.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] Length = 263 Score = 63.5 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 3/103 (2%) Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYS 437 S + +A L N +L + S + Q + + Y+ Sbjct: 163 NQSAAQQAGQIQLANFQNPAGLNSVGGNL--YLPTDASGDATVGTPGGQEGLGSVLQGYT 220 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ EE LI ++ Y ++K++ D M Q + + Sbjct: 221 EQSNVSVVEEFINLIVAQRGYEANSKVVKAADDMYQQVNNLTR 263 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 37/183 (20%), Gaps = 27/183 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + +I N+ NA+ Y R T Sbjct: 1 MIRALYSAASGMTAQQLNVDNIAHNLANANTAGYKMRRAQFQDLIYQTVVQPGSASGQQT 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + V + N + + + F +++ Sbjct: 61 TVPTGLQVGLGTRTSSNEILFTQGSFAQTDNPLDLVIQGKGFFQVRQ------PSGQLAY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + L + A + + + + +I Sbjct: 115 TRSGAFHCDRDGNIVTQDGNTLEPQITVPAAAQQISIAQDGTVSYTLPNQSAAQQAGQIQ 174 Query: 162 NLR 164 Sbjct: 175 LAN 177 >gi|134297196|ref|YP_001120931.1| flagellar basal body rod protein FlgG [Burkholderia vietnamiensis G4] gi|134140353|gb|ABO56096.1| flagellar basal-body rod protein FlgG [Burkholderia vietnamiensis G4] Length = 262 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 2/177 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + + F + D N + S Q ++ + + Sbjct: 87 TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAITVPQNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + + +A L N E S + ++ Sbjct: 147 QSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVS 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQT+ + Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 19/204 (9%), Positives = 42/204 (20%), Gaps = 17/204 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + A N Q I N+ N + + Q Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 57 ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + S + TV NA+ + + Q +A + L+I+ Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNAQSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFIN 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189 + T+S Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204 >gi|254511992|ref|ZP_05124059.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] gi|221535703|gb|EEE38691.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] Length = 261 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +A + L N + E S + + + + + Y Sbjct: 164 TAEGQLLGEFTMASFSNAKGLEAVGSNL--FKETEASGAPVVGRPGEDGLGTLRQGYLED 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 32/160 (20%), Gaps = 28/160 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + +I N+ N + Y R Sbjct: 3 ALKIAATGMTAQQMRVETISNNLANMNTTGYNTRRAEFADLHYQQVARAGAVSASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + + L A S + + + + S Sbjct: 63 PTGIQLGLGVRPAAVTVQLEQGGLSATGSDLDVAIEGRGYLEV------TLPNGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 L+ S E + + + + N + Sbjct: 117 DGSLKRSAEGLIVTSDGFAVAPEITIPDDARSISINAAGE 156 >gi|213161842|ref|ZP_03347552.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 232 Score = 63.5 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161 + + + A + + Q A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186 + E N I+ +++ + Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202 Score = 40.8 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 2/153 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + F + D + + S + N Q + F Sbjct: 82 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ + + + + L N ++E S Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 + + + + Y T VN+ EEL Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVN 232 >gi|317130722|ref|YP_004097004.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315475670|gb|ADU32273.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 279 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 44/139 (31%), Gaps = 2/139 (1%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + DG ++ + + ++ + + + + L Sbjct: 142 NQNGDYVLGSDGNPIAVPGHYESLRITDEGAILVTLDNGESVAVGELQLVQVTKPQLLTS 201 Query: 403 YARNSIGWLEKNRSD-SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 N + + + S+ V++ E++ ++ +++Y + Sbjct: 202 LGDNMYVFPNLEELGLAFGDVLNEAAGAQVFSQGMLEQSNVDMGREMTEMMLTQRNYQFN 261 Query: 462 NKLIMFTDKMLQTLLEGVK 480 ++ I D+M+ L+ ++ Sbjct: 262 SRAISIADEMMG-LVNTIR 279 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 31/145 (21%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTT-------------------ISPENVTVVTQRSE 58 ++ ++ N+ N + Y RRD + +P + V + + Sbjct: 19 QRKLDTVGNNLANLNTTGYKRRDVSFSDLLFQQVNNQRDAHHEIGRTTPNGIRVGSGSAV 78 Query: 59 NKNMF---DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L + + + A +S Sbjct: 79 GQTAVRMEQGALRTTERELDIALTEKGYL----FELAPAEDGTRRFTRDGAFY-----FS 129 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNT 140 N D V N + V+ + Sbjct: 130 PNPDVDGENFIVNQNGDYVLGSDGN 154 >gi|285018207|ref|YP_003375918.1| flagellar basal-body rod protein flgg [Xanthomonas albilineans GPE PC73] gi|283473425|emb|CBA15930.1| probable flagellar basal-body rod protein flgg [Xanthomonas albilineans] Length = 261 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 2/211 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P G + Q+ + ++ ++ ++ A + F+ + D Sbjct: 51 QPGGASSSQTQLPSGLQLGTGVRVVATSKDFEQGSQQQTGRALDVMVNGRGFLEVQMPDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + S + Q +N + G + ++ + + Sbjct: 111 TSAYTRDGSLQVNAQGQLVTNSGYAIQPGIQIPEGAQSLTIGNDGTVSVQVPGSAAALQV 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L +N ++E S + VN+ E Sbjct: 171 GSLTLTDFINPSGLQATGQNL--YVETAASGPAQSGTPGLNGLGTTVQGALEGSNVNVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 EL +I+ +++Y ++ K I TD ML L Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDAMLGYLNN 259 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 15/137 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 + A+ + + + + N+ N + R + T Sbjct: 1 MNQALWVAKTGMDAQQTRMSVVSNNLANTSTTGFKRDRASFEDLLYQQRRQPGGASSSQT 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-------DHYNNSPTHYISKL 107 Q + V +S +Q Q ++M S L Sbjct: 61 QLPSGLQLGTGVRVVATSKDFEQGSQQQTGRALDVMVNGRGFLEVQMPDGTSAYTRDGSL 120 Query: 108 RDSLESYSKNLSEDILG 124 + + + S + Sbjct: 121 QVNAQGQLVTNSGYAIQ 137 >gi|297543694|ref|YP_003675996.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841469|gb|ADH59985.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 266 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + P G + +++ + D Sbjct: 111 YYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + LL N + S + + + + T V Sbjct: 171 TQEVATLGIYNFVNPQGLLSVGNNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNV 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y I++K I D+ML + Sbjct: 229 QVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A + I N+ N + + R + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVL------GPDGTVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + + L + D+ +V + V + + K + + Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGTTQEV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 V + + ++ + Q + + +++ V Sbjct: 175 ATLGIYNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEM 234 Query: 224 GTTLFETVPRDINFEKMNSYT 244 + +IN + + + Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255 >gi|158321569|ref|YP_001514076.1| hypothetical protein Clos_2549 [Alkaliphilus oremlandii OhILAs] gi|158141768|gb|ABW20080.1| protein of unknown function DUF1078 domain protein [Alkaliphilus oremlandii OhILAs] Length = 264 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 3/218 (1%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + V LQ+ V+P+ +L + I G V D Sbjct: 50 TTNLVDGEGSPVNLQVGHGVMPVATTRLFTTGNLERTDNPFDMAINGEGFFVIEAPSGDR 109 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + ++ + + D Sbjct: 110 FYTRDGNFKLSVEGDEMRLVTSDGYTVVSEFEDAIYFDGTMKEITVNANGLITAETEDGE 169 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + +A LL +N + E S + + I ++Y T V Sbjct: 170 IEEIATIALANFINPEGLLAVGKNL--YKETVASGEAVFME-EEARTSDIVQNYLETSNV 226 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ LI +++Y I++K I +D+ML + Sbjct: 227 QIVDEMVRLITAQRAYEINSKAIQTSDEMLGIANNLRR 264 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 11/121 (9%), Positives = 24/121 (19%), Gaps = 13/121 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVV 53 A + +I N+ N + Y ++ E V Sbjct: 3 ALWTAASGMKAQQLNMDTISNNLANVNTTGYKKQKVEFKDLLYANMRTTNLVDGEGSPVN 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLE 112 Q + + + E + + + S+E Sbjct: 63 LQVGHGVMPVATTRLFTTGNLERTDNPFDMAINGEGFFVIEAPSGDRFYTRDGNFKLSVE 122 Query: 113 S 113 Sbjct: 123 G 123 >gi|78067835|ref|YP_370604.1| flagellar basal body rod protein FlgG [Burkholderia sp. 383] gi|77968580|gb|ABB09960.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 262 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 74/251 (29%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + +++ + +N V + + + Q Sbjct: 11 GMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELPSGLQLGT 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + ++A + + + + + D + N Q + Sbjct: 71 GVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVT 130 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 S G ++ + + AR Sbjct: 131 SSGYQVLPAITIPQNATSLTIGKDGVVTVTQAGSTNSVQIGSLQVATFINPAGLEARGEN 190 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + E S + ++ +S++Y + VN+ +EL +I+ +++Y I++K + + Sbjct: 191 LFSETTSSGAPNVSQPGLNGAGTLSQNYVESSNVNVVQELVNMIQTQRAYEINSKAVTTS 250 Query: 469 DKMLQTLLEGV 479 D+MLQT+ + Sbjct: 251 DQMLQTVTQMK 261 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 8/134 (5%), Positives = 23/134 (17%), Gaps = 15/134 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 108 RDSLESYSKNLSED 121 + + + S Sbjct: 121 QTNAQGQLVTSSGY 134 >gi|148256792|ref|YP_001241377.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. BTAi1] gi|146408965|gb|ABQ37471.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. BTAi1] Length = 262 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 55/188 (29%), Gaps = 2/188 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 R + + + + F + D + + + + + + Sbjct: 77 TPRSMTQGTLSQTGNSLDLAISGEGFFKILMPDGTFQYTRDGTFQMDNQGRIVTAQGNPV 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + A + + + + L N Sbjct: 137 QPTISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQLQLTRFINKAGLQPVGNNQFTD-- 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + +Q I++ V++ E+S LI +++Y ++ K+I D+M+ Sbjct: 195 TPSSGAPQDGVANQDGLGSITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMM 254 Query: 473 QTLLEGVK 480 Q+ + Sbjct: 255 QSTTALFR 262 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 19/241 (7%), Positives = 48/241 (19%), Gaps = 36/241 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N + ++ Sbjct: 3 ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYDHVRRVGAQSSDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L +++ + F + Sbjct: 63 PVGIDIGGGVKTVGTPRS---MTQGTLSQTGNSLDLAISGEGFFKIL------MPDGTFQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--EL 158 + + + + T+ N + + I +L Sbjct: 114 YTRDGTFQMDNQGRIVTAQGNPVQPTISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQL 173 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 +++ V N+ +S +Q + + + V + + Sbjct: 174 QLTRFINKAGLQPVGNNQFTDTPSSGAPQDGVANQDGLGSITQGSLEQANVDVVSEMSEL 233 Query: 219 V 219 + Sbjct: 234 I 234 >gi|299066528|emb|CBJ37718.1| Flagellar basal-body rod protein (Distal rod protein) [Ralstonia solanacearum CMR15] Length = 263 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 30/153 (19%), Gaps = 28/153 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 + +I N+ N + + + Sbjct: 1 MFDALYVGATGMQAQQLNLDTIANNLANVNTTGFKKSRVSFTDLVAQEAGRIQPTSDASL 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + P V S K + S+ + F + + Sbjct: 61 GPLSALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVA------LPDGSRA 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ + + + ++ + + Sbjct: 115 FTRGGTLKVNSDGMLVTQAGYVVKPGISVPSNA 147 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 58/193 (30%), Gaps = 4/193 (2%) Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 +P + + + + + + D T+ VN Sbjct: 65 ALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVALPDGSRAFTRGGTLKVN 124 Query: 342 PQYR--SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + ++ G ++ A I+ S + +A + Sbjct: 125 SDGMLVTQAGYVVKPGISVPSNAKDLTIAADGHVRISVPNQSSPIDAGQLELAHFASPGM 184 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 LL N + + S + Q ++ + V + +E+ L+ +++Y Sbjct: 185 LLAQGDNL--YRASDTSGEPVVGKAGQDNLGTFAQGFLEGSNVKMIDEMVGLMVAQRAYE 242 Query: 460 ISNKLIMFTDKML 472 + K++ +D++L Sbjct: 243 ANVKVVQASDEIL 255 >gi|254478136|ref|ZP_05091519.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035998|gb|EEB76689.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 251 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 65/249 (26%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51 ++ A + ++ + N+ N + Y + + + P Sbjct: 1 MIRGLYTAASGMLAQTKVMDVLANNLANVNTVGYKKDVVVLSSFPNFETIREGGDNVPPD 60 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + + L + + F + + + T Sbjct: 61 RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + Y + + D + + N + + V ++R + Sbjct: 121 ADGYLVTKDGYLVLGENGPIRLSQGDVSVDENGNIINNGQLVDRLRIVDFDNYDALKKQG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 VN I T + + + ++ IS + ++ V T+ Sbjct: 181 DNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVN---MISVMRNYESNQKVVTAF 237 Query: 224 GTTLFETVP 232 TL + V Sbjct: 238 DETLGKAVN 246 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K++ D+ L + Sbjct: 199 GRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKAVN 246 >gi|114762160|ref|ZP_01441628.1| flagellar basal-body rod protein FlgC [Pelagibaca bermudensis HTCC2601] gi|114545184|gb|EAU48187.1| flagellar basal-body rod protein FlgC [Roseovarius sp. HTCC2601] Length = 130 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + + + + NI N D Y R+ E V + Sbjct: 1 MSAFSDALSVSSSGLRAQADRLRVVSENIANVDTPGYRRKTLPFE-LGEGSDGVREVQAG 59 Query: 60 KNMFDKV 66 D+ Sbjct: 60 DTRLDRS 66 Score = 36.5 bits (82), Expect = 10.0, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 23/41 (56%) Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L EL+ + ++SY + K+ T +M +L++ ++ Sbjct: 88 TNVDLIVELADAREAQRSYEANLKMFEQTRQMSSSLMDLLR 128 >gi|85710166|ref|ZP_01041231.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] gi|85688876|gb|EAQ28880.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] Length = 263 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 2/160 (1%) Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + PG F + D + + T+ Q + + + N+ Sbjct: 99 DGPGFFQVELPGGGDIAYTRAGNFTLSPEGQLVTTQGYALTPPIQVPQGAQNITIAPDGT 158 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + VA L N + +E S D + Q +I Sbjct: 159 VSAVQPGQTAPIQIGQLQVASFVNPAGLRAIGDNFL--VETAASGPVDAGLAGQFGRGNI 216 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + T VN+ EEL +I+ +++Y I++K++ D+ML Sbjct: 217 RQGMLETSNVNVVEELVEMIEAQRAYEINSKMVSSVDEML 256 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 56/236 (23%), Gaps = 36/236 (15%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------ 45 + + A+ + I N+ N + R Sbjct: 3 TSALHVARTGLEAQDARMRVIANNLANIGTTGFKRDRAEFATLAYQEMRVAGQQSTQQTA 62 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V L+ +++ F ++ + Sbjct: 63 FATGLNLGTGVQVTGTSRIE---AQGTLNQTGNSLDLALDGPGFFQVE-----LPGGGDI 114 Query: 100 PTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S E L V A+ + + + VQ + + + Sbjct: 115 AYTRAGNFTLSPEGQLVTTQGYALTPPIQVPQGAQNITIAPDGTVSAVQPGQTAPIQIGQ 174 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ--RDVLLQKISEIIGISTIV 211 L++++ + ++ + AS Q R + Q + E ++ + Sbjct: 175 LQVASFVNPAGLRAIGDNFLVETAASGPVDAGLAGQFGRGNIRQGMLETSNVNVVE 230 >gi|319409187|emb|CBI82831.1| Flagellar basal-body rod protein flgG [Bartonella schoenbuchensis R1] Length = 264 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 17/197 (8%), Positives = 35/197 (17%), Gaps = 37/197 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I N+ N + + R Sbjct: 5 SLSIAATGMAAQQTNLDVIANNLANINTTGFKRARAEFADLMYVADRAVGVPNMLNQAIV 64 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R N +A+ + +++ N Sbjct: 65 PEGAMIGMGVRTAAVRKVN---MQGAFVQTGNALDLAINGNGWFEVQD------PNGNVF 115 Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 S + L + I + V T + + Sbjct: 116 YTRSGAFNLSETGQIETLDGNLVQPAITIPIGSKNITVSPDGTVYYQTDMDPTPVEAGRL 175 Query: 158 LEISNLRRFLSELTVVN 174 ++ + E N Sbjct: 176 NLVNFVNAVGLEAVGDN 192 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 2/168 (1%) Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 + A + + + + + + + Q + L Sbjct: 90 QTGNALDLAINGNGWFEVQDPNGNVFYTRSGAFNLSETGQIETLDGNLVQPAITIPIGSK 149 Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 N+ D + V L N + E S + Sbjct: 150 NITVSPDGTVYYQTDMDPTPVEAGRLNLVNFVNAVGLEAVGDNL--FRETPASGAPVPGF 207 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + I ++ + V+ +E++ LI ++SY +++K+I +D+M Sbjct: 208 PKDDGYGGIMQAMLESSNVDPVKEITELIAAQRSYEMNSKVIQASDEM 255 >gi|315929129|gb|EFV08356.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 305] Length = 250 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 18/205 (8%), Positives = 39/205 (19%), Gaps = 31/205 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 + A Q NI N + + + SP Sbjct: 3 SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62 Query: 48 ENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + V K + L + S+ + F ++ Sbjct: 63 SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIGYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E N L V T + + + + + Sbjct: 117 NGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQVELV 176 Query: 161 SNLRRFLSELTVVNDAIKFKTASKH 185 + N ++ + Sbjct: 177 QFINPAGLHSMGDNLYLETGASGAP 201 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 41/163 (25%), Gaps = 2/163 (1%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 + F + D + T ++ + + + Sbjct: 90 TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 149 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + + + L N +LE S + + Sbjct: 150 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 207 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 Q I + V L EE++ LI +++Y +K I + Sbjct: 208 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTS 250 >gi|254292905|ref|YP_003058928.1| flagellar basal body rod protein FlgG [Hirschia baltica ATCC 49814] gi|254041436|gb|ACT58231.1| flagellar basal-body rod protein FlgG [Hirschia baltica ATCC 49814] Length = 261 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 2/181 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 ++ + + + + D + + + ++ + Q + + G Sbjct: 83 QGPVQQTSNSYDVAMQGDGYFIVQLPDGRDAYTRAGNFSVNGDGQIVTEDGYTVSPGINV 142 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + +V A + + +A L N + LE S + Sbjct: 143 PEDTLSVTINAQGTVTATTAGATDPTDLGALELARFVNPAGLDAIGDNLL--LETVASGA 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + F I + + T VN E+S LI +++Y +++K+I TD+MLQT + Sbjct: 201 ANVGQAGALGFGTILQGFLETSNVNAVTEISALINAQRAYEMNSKVITATDEMLQTTSQL 260 Query: 479 V 479 Sbjct: 261 K 261 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 11/174 (6%), Positives = 28/174 (16%), Gaps = 34/174 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N + Y R+ Sbjct: 3 ALSTAATGMQAQQLNVEVISNNIANMNTTGYKRQRAEFQDLLYTNMEKMGVSSSDANTIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + S++ + ++ Sbjct: 63 PTGVQIGTGVKAGSVYRITEQ---GPVQQTSNSYDVAMQGDGYFIVQ------LPDGRDA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + + + + N D Sbjct: 114 YTRAGNFSVNGDGQIVTEDGYTVSPGINVPEDTLSVTINAQGTVTATTAGATDP 167 >gi|167038473|ref|YP_001666051.1| hypothetical protein Teth39_2092 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116868|ref|YP_004187027.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857307|gb|ABY95715.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929959|gb|ADV80644.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 266 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + P G + +++ + Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 D + + LL N + S Q + + + Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPSTRDDFQGRMGKVMQGFL 223 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V + +E+ +I +++Y I++K I D+ML + Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/249 (9%), Positives = 53/249 (21%), Gaps = 32/249 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A I N+ N + + R + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ + Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + L D + + N + + + + N Sbjct: 115 DGSFKLS-------ADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNP 167 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 E+ + L + + S + + TS+ Sbjct: 168 DGTTQEVATLGIYNFVNPQGLLSVGSNLYEPTEASGQPSTRDDFQGRMGKVMQGFLETSN 227 Query: 224 GTTLFETVP 232 + E V Sbjct: 228 VQVVKEMVD 236 >gi|313673746|ref|YP_004051857.1| flagellar basal-body rod protein flgc [Calditerrivibrio nitroreducens DSM 19672] gi|312940502|gb|ADR19694.1| flagellar basal-body rod protein FlgC [Calditerrivibrio nitroreducens DSM 19672] Length = 134 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 6/62 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M + N A + + I N+ NA+ Y R+D + E Sbjct: 1 MGFFNILNVAATGLSAQRIRINVISSNLANANTTKTETGEPYKRKDVVFKELLEGEYTGG 60 Query: 55 QR 56 R Sbjct: 61 VR 62 Score = 41.6 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 VN EE+ +I+ +SY + ++ ++ Sbjct: 94 NVNPIEEMVNMIEASRSYEANVTVLNTAKQL 124 >gi|254499106|ref|ZP_05111796.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12] gi|254351645|gb|EET10490.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12] Length = 408 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 42/450 (9%), Positives = 103/450 (22%), Gaps = 59/450 (13%) Query: 35 NYVRRDTMTTISPEN------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88 + R D + V N + F + Sbjct: 5 GFKRSDVFYSSLGNGQGEEGMGHGVRVSGMRTNYGPGNYLKGMGDSDLAIVGHGFFVV-- 62 Query: 89 MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 N + E + D+A + + Q Sbjct: 63 ----KLKNNEFVYTRDGHF--NFEDGILIDRKTGGQVQGYDSAGNLAPIHE---KGPQTT 113 Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 A ++I L+ S + + E + I ++++ + + I Sbjct: 114 PGKASRDIFLKGSFVAHLIDEKKNTDPNIPDPNIPDPTPKAPTEKKNKYENVVLTLDKIY 173 Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 + + + L E + + + Sbjct: 174 DAQGKAHKVTFEFKNEPPLGEQYNLEKFWVLEDV-------------------------- 207 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 +D + + +Q E A G+ KD I + Sbjct: 208 ------HCDDKDVDITPYYDQKIEFAYSSSGAEPGKDSIQFGLNGKQVNIYFGSAHNGST 261 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 Q + + + R+N + G K + + G + + Sbjct: 262 NSVQLDTVEGAFSNEKRTNIEIDYNDGYGVGKQSYWSFDEEGQIAYYYDNGQTIKGIHVG 321 Query: 389 DPVAGINTN---VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 N T + R + + F I + V+ Sbjct: 322 LARFDDMENNLIQTQDNFFR-------AKTNRGIHYGRPNNNGFECIRANELEASNVDST 374 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 E + ++ +++ + ++++ ++L+ L Sbjct: 375 AEFANIVVLQRMFQACSQIMDIDKQLLEEL 404 >gi|296135671|ref|YP_003642913.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] gi|295795793|gb|ADG30583.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] Length = 261 Score = 63.1 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + F + + + + Q + +L Sbjct: 81 MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANGYLVQPTV 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +V + + + +A L N +L+ S Sbjct: 141 TIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIGDNL--YLQTGSS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + + Y + VN+ EL +I +++Y +++K + +D+MLQ + Sbjct: 199 GAPNTGQPTLNGLGSVQQGYLESSNVNVVAELVDMISTQRAYEVNSKAVTASDQMLQYVN 258 Query: 477 E 477 Sbjct: 259 N 259 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/250 (7%), Positives = 54/250 (21%), Gaps = 28/250 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + + + Sbjct: 1 MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97 V V+ M L +++ Q F + E + + Sbjct: 61 QYPSGLQLGTGVRPVSTERL---MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRD 117 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + I T + + A + Sbjct: 118 GTFQLNNQGQLVTANGYLVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLAS 177 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + + + + L + S + ++ +V + Sbjct: 178 FVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLGSVQQGYLESSNVNVVAELVDMISTQ 237 Query: 218 VVYTSDGTTL 227 Y + + Sbjct: 238 RAYEVNSKAV 247 >gi|302338304|ref|YP_003803510.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] gi|301635489|gb|ADK80916.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 N S + + V++ +E+ +I +++Y +++K I +D ML Sbjct: 197 TNASGDAIPGRPGFDGMGQTVQRFLEMSNVSVVQEMVNMIVAQRAYELNSKAIQTSDTML 256 Query: 473 QTLLEGVK 480 + Sbjct: 257 GIANSLKR 264 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 55/241 (22%), Gaps = 33/241 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 ++ A + +I N+ N + + + T Sbjct: 1 MMRSLWTAASGMTGQQFNIDTISNNLSNVNTTGFKKNRADFEDLLYQTSRVAGTPATELT 60 Query: 45 ISPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V V + K L + F + + + Sbjct: 61 TVPTGVQVGHGVKVAATQKMFTQGALQNTGNVTDLAIQGDGFFRVLLI------DGSYGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN-FNTSAREVQKIRADADKEIELEI 160 + N + L V+ + + + A D +++ Sbjct: 115 SRDGSFKIDSNGQLVNSNGHRLIPEVVLPENFERDSLTISQDGRITVKVAGNDDPVQVGQ 174 Query: 161 SNLR-----RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 L LS + N I + D +Q+ E+ +S + N Sbjct: 175 LELYRFVNPAGLSAIGQNNFKITNASGDAIPGRPGFDGMGQTVQRFLEMSNVSVVQEMVN 234 Query: 216 D 216 Sbjct: 235 M 235 >gi|255021356|ref|ZP_05293404.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] gi|254969219|gb|EET26733.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] Length = 261 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 2/176 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + A + F D + + + Q ++ +L Sbjct: 81 MTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRDGTFQLNNQGQLVTSNGYLLQPPV 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ + S + +A L N +L+ S Sbjct: 141 TIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQLANFINPTGLQSIGDNL--YLQTGSS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + Y + VN+ EL +I +++Y I++K + +D ML Sbjct: 199 GAPQTGQPTLNGLGSVQQGYLESSNVNVVSELVDMIATQRAYEINSKAVSTSDSML 254 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 20/252 (7%), Positives = 53/252 (21%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + I N+ N + + + + Sbjct: 1 MMRSLYVAATGLEGEQTKMDVIANNLANVNTTGFKQSRAVFQDLLYQNLRQPGAQSSQTT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97 V VV M L + +A+ Q F + + + + Sbjct: 61 QYPSGLQLGTGVRVVATERL---MTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRD 117 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y I + Q + + + Sbjct: 118 GTFQLNNQGQLVTSNGYLLQPPVTIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQLAN 177 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + + + + L + S + +S +V Sbjct: 178 FINPTGLQSIGDNLYLQTGSSGAPQTGQPTLNGLGSVQQGYLESSNVNVVSELVDMIATQ 237 Query: 218 VVYTSDGTTLFE 229 Y + + Sbjct: 238 RAYEINSKAVST 249 >gi|254437698|ref|ZP_05051192.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] gi|198253144|gb|EDY77458.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] Length = 257 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F + D + S + + + ++ V Sbjct: 87 NSFDLAIDGQGFFQVLMPDGRVGYTRNGSFSRSADGTMTTASGYVIQPEIRIPDEAVEVN 146 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +A L + + +E S + + Sbjct: 147 ISQDGIVSVRSSGQEVAQEVGQLSLATFANPRGLQPIGESFV--VETTASGAATVAAPQS 204 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + VN+ ++L +I+ +++Y +S+K I +D+M+ Sbjct: 205 QGLGKLMQGALEASNVNVVQQLVEMIETQRAYEVSSKAITSSDEMM 250 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 30/149 (20%), Gaps = 27/149 (18%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------------- 51 + A+ N + I N+ N + + V+ Sbjct: 1 MHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVSRAGGDQTSEGTALTS 60 Query: 52 ----VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 R+ N + ++ Q F + Sbjct: 61 ALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIDGQGFFQVL------MPDGRVGYTRNG 114 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEV 134 S + S ++ + E V Sbjct: 115 SFSRSADGTMTTASGYVIQPEIRIPDEAV 143 >gi|90415316|ref|ZP_01223250.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] gi|90332639|gb|EAS47809.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] Length = 261 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 2/204 (0%) Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 G++ A + ++ ++ ++ A + + + D Sbjct: 53 GGQVDAESETPTGLMLGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQADGTI 112 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + S + + + ++ + + Sbjct: 113 AYSRDGSFKLSAEGNLVTAGGQTLLPAITVPQNAASLTIGRDGVVTVELSNGGGSSQIGQ 172 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 ++ N L RN + + N S + + + + VN+ EE+ Sbjct: 173 LQLSRFVNNSGLQPIGRNLM--QQTNASGDPLVVLPGADGAGMLMQGALEASNVNVVEEM 230 Query: 449 SFLIKVEQSYNISNKLIMFTDKML 472 +I+ +++Y +++K I D ML Sbjct: 231 VNMIETQRAYEVNSKAISAADGML 254 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 27/142 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT-- 54 + A A+ + + I N+ N + + + + P V Sbjct: 1 MDASLWIAKTGLTAQQTRMSVISNNLANVNTTGFKKDRAVFEDLLYQNIVPAGGQVDAES 60 Query: 55 -------------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + K + +A+ + ++++ Sbjct: 61 ETPTGLMLGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQA------DGTIAY 114 Query: 102 HYISKLRDSLESYSKNLSEDIL 123 + S E L Sbjct: 115 SRDGSFKLSAEGNLVTAGGQTL 136 >gi|254255089|ref|ZP_04948406.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899734|gb|EAY71577.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 261 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 2/191 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 L + + + V F+ + + + + + + Sbjct: 73 LVGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVEMANGETGYTRAGQLRRNDEGRLTNAQG 132 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 +V + + +A LL N Sbjct: 133 LPLVPTIDIPADATSVTIGENGTVSVTTGSSAVPTEVGRLQLANFVNPAGLLAVGGNL-- 190 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++E S + + V EE+ +I +++Y +S K++ D Sbjct: 191 FVETGASGPPSEGEPGADGLGVVRQGALEGSNVQAVEEMVEMITAQRTYEMSTKVLSAAD 250 Query: 470 KMLQTLLEGVK 480 M+Q L + + Sbjct: 251 SMMQYLAQVAR 261 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 26/151 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------I 45 + ++ + +I N+ N + + R + Sbjct: 1 MNHALWISKTGIQAQDAKLQTIANNLANVNTVGFKRDRAVFEDLFYRTEQQPGAQIADNA 60 Query: 46 SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + V + L + + F ++ + Sbjct: 61 TGPGVQMGNGTRLVGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVE------MANGETGYT 114 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 +LR + E N L T+ A+ Sbjct: 115 RAGQLRRNDEGRLTNAQGLPLVPTIDIPADA 145 >gi|315636309|ref|ZP_07891559.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] gi|315479398|gb|EFU70081.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] Length = 583 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/462 (7%), Positives = 113/462 (24%), Gaps = 24/462 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE 58 +++ + +N + + NI N+ + + + V+ +S Sbjct: 1 MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLYTNGGYGKGVSTQSI 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +K +++ + + + F + + + + + + + Sbjct: 61 SKQFAQGSINSTGATLDMAIDGKGFFIVSDKAGEI------YYTRAGDFKQTKDGWLQTQ 114 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + V + N + + + I + ++ T Sbjct: 115 DGMNVLGLVPQSKLISSTNPQDTMFTTEYSKNVVSTNINDGKGTINNINAKTTDYTKTAT 174 Query: 179 FKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 +S + + + + I++ + V S + + + Sbjct: 175 ADDSSLKGDNYKSAQAKINDVDTLITDYLNKLNKYDGTQASVASVSQISKVDFSSKFSNL 234 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------GKIKALLQIRDSVVPIFQNQL 290 + NS ++ + + + + + + + D Q Q+ Sbjct: 235 LSEGNSISLNIDGKNFSVAFNNDGTASQQDMQDIYNFLSPEGRTTYGLSDPSTIPTQTQV 294 Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 D++ + + + P + +E + Y + + Sbjct: 295 DDLFSAIPDQAVIDAMPTSTPAEIAAKAAAQAQKDQAVTAYQTAYQARVDAQTSYNTAKN 354 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ K A D + A +N ++ ++ Sbjct: 355 AISAYKDLADKISNTAGYSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVA 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + + + V E + L Sbjct: 415 --GSGMAMVDSAKDALKQAVEKAGGKFLEITNV---MEYANL 451 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 53/458 (11%), Positives = 106/458 (23%), Gaps = 33/458 (7%) Query: 24 IVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF 83 + NI NA +Y + T S + D A + L+ + Sbjct: 158 TINNI-NAKTTDYTKTATADDSSLKG--------------DNYKSAQAKINDVDTLITDY 202 Query: 84 EALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 S + + + L + + + S Sbjct: 203 LNKLNKYDGTQASVASVSQISKVDFSSKFSNLLSEGNSISLNIDGKNFSVAFNNDGTASQ 262 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 +++Q I E I +T DQ + S Sbjct: 263 QDMQDIYNFLSPEGRTT---------YGLSDPSTIPTQTQVDDLFSAIPDQAVIDAMPTS 313 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 I+ + T R N+ + D + ++ Sbjct: 314 TPAEIAAKAAAQAQKDQAVTAYQT--AYQARVDAQTSYNTAKNAISAYKDLADKISNTAG 371 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 ++V G + I I +L++ S + + Sbjct: 372 YSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVAGSGMAMVDSAKDALKQA 431 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 ++ K + + N ++ + + Sbjct: 432 VEKAGGKFLEITNVMEYANLGSYGTSDLNLRLDTLGLVEGDFGEASVSDDGFVFVTSGDN 491 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 A L N S + N I E V Sbjct: 492 KFLVGRVSTAAFRNEQGLEAVGDNKYS--ATKSSGTAYNAD----GMNKIKEKSLERSNV 545 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + L+ L+ +++Y S+K I +D L+T ++ VK Sbjct: 546 SYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAIDMVK 583 >gi|312164118|gb|ADQ38281.1| flagellar hook protein [Azospirillum brasilense] Length = 291 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/287 (9%), Positives = 67/287 (23%), Gaps = 17/287 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54 M + +FN ++ +I NI NA + +T + + Sbjct: 1 MGITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNG 60 Query: 55 QRSE-NKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--------MSADDHYNNSPTHYIS 105 R+ + + F ++++ +A ++ Sbjct: 61 VRAFERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSG 120 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 E N + L +D A + S+ + D ++L Sbjct: 121 DFSPDKEGRLVNGAGKALMGFKLDPASGTGSFGSLSSMTPVSLSGLQDYREASTQASLNL 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225 L + + +D+ + + V+ + Sbjct: 181 NLPYDQAPVAGEITTANTTGVVLNMVDKNGADGAMALRFLKTGQAEDGTSTWQVFNAG-- 238 Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + N + T S F ++ + + Sbjct: 239 VVGADGKPVGNGNVNDPTTWKSLGTLNFARNGTLTGGPTGSPVTLTL 285 >gi|289803892|ref|ZP_06534521.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 344 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 34/324 (10%), Positives = 77/324 (23%), Gaps = 11/324 (3%) Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI- 201 ++ + ++ + + +S + D I Sbjct: 23 NKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIE 82 Query: 202 --------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 + G+ T + D T L + K + Sbjct: 83 IPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFS 142 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 I VV SN +A + A ++ DS + D + Sbjct: 143 IGSPVVYSNSNNADKTVSLTA--KVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATK 200 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + + +++ + P + + ++ + + L D Sbjct: 201 DADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVD 260 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433 + + + N T + + + S V + Sbjct: 261 TGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLY 320 Query: 434 ESYSNTVGVNLQEELSFLIKVEQS 457 + + GVNL EE L + +Q Sbjct: 321 KQQQSVSGVNLDEEYGNLQRYQQY 344 >gi|91976161|ref|YP_568820.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB5] gi|91682617|gb|ABE38919.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB5] Length = 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 4/182 (2%) Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 P + + I+ D + + R S Sbjct: 83 QGTISPTGNDLDIAIRGEGFFKIQMPDGTFTYSRDGSFTTDNTGRIVTSNGNPVQPTITI 142 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + LL N E S Sbjct: 143 PSGASGITINAQGQVTVNVPGSTTPVLLGQIGLTRFINKTGLLPIGDNLFT--ETPASGP 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + F + + V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 201 PQDGTANTDGFGDMQQKALEQANVEVVNEISDLIAAQRAYEMNAKVVSAADQMLQSTSNM 260 Query: 479 VK 480 + Sbjct: 261 FR 262 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 11/60 (18%), Gaps = 4/60 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A I NI N Y ++ R D+ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANMRTTGYKKQTAAFQDLIY----DHVRRVGAQASDQ 58 >gi|325291939|ref|YP_004277803.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] gi|325059792|gb|ADY63483.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] Length = 262 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + Y R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ + L + + + Q + ++ ++ Sbjct: 63 PEGANIGLGVQTSAVRNIH---TQGNLIETGNKLDVAIIGQGWFQIE------AADGSTL 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + + + + + +I AD ++ Sbjct: 114 YSRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTARIGNAADFTELGQL 173 Query: 161 SNLR 164 + Sbjct: 174 TIAN 177 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 2/118 (1%) Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 ++ + +A L N Sbjct: 138 PNINIPTDAQDITITRTGQVTARIGNAADFTELGQLTIANFANEAGLKPLGDNLFSQ--T 195 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 S + + + + +I +SY V+ +E++ LI +++Y +++K+I D+M Sbjct: 196 PASGAAVIGVPDDPSYGYIKQSYLEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253 >gi|294339841|emb|CAZ88204.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Thiomonas sp. 3As] Length = 261 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356 + + + + F + + + + Q + +L Sbjct: 81 MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANGYLVQPTV 140 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 +V + + + +A L N +L+ S Sbjct: 141 TIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIGDNL--YLQTGSS 198 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + + + Y + VN+ EL +I +++Y +++K + +D+MLQ + Sbjct: 199 GAPNTGQPTLNGLGSVRQGYLESSNVNVVAELVDMISTQRAYEVNSKAVTASDQMLQYVN 258 Query: 477 E 477 Sbjct: 259 N 259 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/250 (7%), Positives = 54/250 (21%), Gaps = 28/250 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A+ + I N+ N + + + Sbjct: 1 MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97 V V+ M L +++ Q F + E + + Sbjct: 61 QYPSGLQLGTGVRPVSTERL---MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRD 117 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + I T + + A + Sbjct: 118 GTFQLNNQGQLVTANGYLVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLAS 177 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + + + + L + S + ++ +V + Sbjct: 178 FVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLGSVRQGYLESSNVNVVAELVDMISTQ 237 Query: 218 VVYTSDGTTL 227 Y + + Sbjct: 238 RAYEVNSKAV 247 >gi|255030384|ref|ZP_05302335.1| flagellar hook protein FlgE [Listeria monocytogenes LO28] Length = 189 Score = 63.1 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 2/135 (1%) Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + Y D VA + L++ Sbjct: 57 GTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 116 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 ++ S + Q IS S V+L E L+ + + + K+I Sbjct: 117 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVI 174 Query: 466 MFTDKMLQTLLEGVK 480 D +++ ++ ++ Sbjct: 175 RVADDVMKQIVNLIQ 189 >gi|218288303|ref|ZP_03492602.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241662|gb|EED08835.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 301 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 75/272 (27%), Gaps = 3/272 (1%) Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + + ++ T T + + T +NP + V + + Sbjct: 31 TVGFKQSDVQFADLLSQTMSLGTAGTSPSTGGSGATTGIGGTNPEQVGLGVQVAATQMDM 90 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 +G + + + N + + + +S L + Sbjct: 91 SQGPDETTGVPTNVAIQG--NGFFVVTDGTSTYLTRAGNFSVDSAGNLVLPNGVIAEGYS 148 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + T + GS + ++ + I + + K Sbjct: 149 SSSKPSSASTTQPTTEINVYQLAGVTLGSGNTVSNVSIGSDGSITATITNGTTTTTKVIG 208 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + +A + L+ N + Q + ++ V+L ++ Sbjct: 209 YLALAQVPNPQGLVSVGDNLFS-ASSPAAGQPTYWTPGQGTYGTLASGELEGSNVDLSQQ 267 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + +I + +Y + +I + +LQ L+ Sbjct: 268 FAEMIVAQNAYVANTHMIGTDNAILQALVNMK 299 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 13/184 (7%), Positives = 31/184 (16%), Gaps = 23/184 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 +L N A + + NI N + + + D Sbjct: 1 MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTSPST 60 Query: 44 ----TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + T Q + + + + ++ Sbjct: 61 GGSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTDGTST 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + I + + A Sbjct: 121 YLTRAGNFSVDSAGNLVLPNGVIAEGYSSSSKPSSASTTQPTTEINVYQLAGVTLGSGNT 180 Query: 160 ISNL 163 +SN+ Sbjct: 181 VSNV 184 >gi|295400718|ref|ZP_06810695.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977299|gb|EFG52900.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 285 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 8/207 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + D + + + + RVLI + I L + G +++ + Sbjct: 85 GAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQNVLMLVTSD 144 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + N P+ +D + +N S + + Sbjct: 145 GNPVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRIMRRVNIGVTSILRPQLLQSAGN 204 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + + N + + + +++ V+L EL+ ++ Sbjct: 205 NIWTLPDFNALNVNAADVAVNMTGNLRAQIG-------MTQGALEQSNVDLGTELTDMMI 257 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+SY ++ + I +D+ML L+ G++ Sbjct: 258 TERSYQLNARSISISDQMLG-LINGIR 283 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 18/46 (39%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 M +L A N QQ I NI N++ + RR+T Sbjct: 1 MHVLRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGEL 46 >gi|254500847|ref|ZP_05112998.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222436918|gb|EEE43597.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 260 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 +A + + +A L N +LE + S + ++ Sbjct: 150 TIAPSGKVQGVDEAGATVDLGQIQLARFVNKAGLEAIGDNL--FLETDASGAPQTGNPNE 207 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + V+ E++ LI +++Y +++K+I D+M T + Sbjct: 208 DGYGSTQQFFLEMANVDAVTEIADLISAQRAYEMNSKVIQAADQMYSTTTQI 259 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/256 (7%), Positives = 48/256 (18%), Gaps = 22/256 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PENV 50 A I N+ N Y ++ V Sbjct: 3 ALYTAATGMKAQEYNVEVISNNVANMRTTGYKKQRADFQDLLYQNLRRMGTETSDDGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q + ++ E + Sbjct: 63 PTGIQIGTGVKLASTGRVMSQGSMENTGKELDIAIRGEGFFQIQLPGGATGYSRDGSFER 122 Query: 110 SLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + L T+ +N ++ + + V + A D + + Sbjct: 123 DQNGQLVTIDGYQLDPNITIPENTRDLTIAPSGKVQGVDEAGATVDLGQIQLARFVNKAG 182 Query: 168 SELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 E N + + D +++ + ++ I + Y + Sbjct: 183 LEAIGDNLFLETDASGAPQTGNPNEDGYGSTQQFFLEMANVDAVTEIADLISAQRAYEMN 242 Query: 224 GTTLFETVPRDINFEK 239 + + Sbjct: 243 SKVIQAADQMYSTTTQ 258 >gi|325111113|ref|YP_004272181.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] gi|324971381|gb|ADY62159.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] Length = 267 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/183 (9%), Positives = 43/183 (23%), Gaps = 26/183 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ + A + + Q I N+ N+ + R Sbjct: 1 MSV-RTLHSAASGMEASLFQLDVIANNLANSGTTGFKRSRAEFEDLFYEHFKLPGAQPAP 59 Query: 46 --SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 +P + V R+ + + L+ +++ + F +++ D Sbjct: 60 QQTPTGIAVGLGAAIRATQVDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDP-----Y 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E S + + +A + Sbjct: 115 YTRAGTFTKNSEGTIVMSSAQTGRPLEPSINIPPTAVNISITSNGEVWYQEAGSSTMTQA 174 Query: 161 SNL 163 + Sbjct: 175 GQI 177 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 6/207 (2%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + + + Q E + G+ + + + D + Sbjct: 65 GIAVGLGAAIRATQVDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDPYYTRAGTFTKN 124 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 TI ++ P + N+ + S +A Sbjct: 125 SEGTIVMSSAQTGRP---LEPSINIPPTAVNISITSNGEVWYQEAGSSTMTQAGQIQLAR 181 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 N L++ N + + S + + Q + + + T V EL LIK Sbjct: 182 FVNNEGLIQMGENL--YRASDASGVATISIPGQDGAGTLRQGFLETSNVEPVRELVELIK 239 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++ ++++ + D+MLQ L+ G++ Sbjct: 240 TQRNVELNSEAMKAGDQMLQ-LVNGLR 265 >gi|332800000|ref|YP_004461499.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] gi|332697735|gb|AEE92192.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] Length = 270 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 14/186 (7%), Positives = 39/186 (20%), Gaps = 28/186 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + N+ N + + + Sbjct: 1 MMRALWSASSGMQAQQLNMDITSNNLANVNTAGFKKSRAEFKDLLYETLQRPDSPELLSG 60 Query: 44 TISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 P + V ++ + L + F + N Sbjct: 61 AAVPVGIQVGHGVRPSATGRDFNEGNLQPTGNTFDVAIEGTGF------FMVERPDGNLA 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + SL+ +NL + + + + + ++ + I Sbjct: 115 FTRDGSFKVSLDGTDRNLVTSEGYYVLSGDESYITIPEEYTDISISSDGLITGQDEDGTI 174 Query: 161 SNLRRF 166 L + Sbjct: 175 EELGQI 180 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 1/158 (0%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + T D ++ + +++ + D Sbjct: 114 AFTRDGSFKVSLDGTDRNLVTSEGYYVLSGDESYITIPEEYTDISISSDGLITGQDEDGT 173 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + LL N E + + S + + + + V Sbjct: 174 IEELGQIGIVKFLNPQGLLAIGNNLFEATEASGEYVP-MEDVSDPGYGTLLQGFLEMSNV 232 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + EE+ LI +++Y ++ K + +D+ML + Sbjct: 233 QVVEEMVNLIIAQRAYEVNTKAVQASDEMLAQANNLRR 270 >gi|159045792|ref|YP_001534586.1| flagellar basal body rod protein FlgG [Dinoroseobacter shibae DFL 12] gi|157913552|gb|ABV94985.1| flagellar basal-body rod protein FlgG [Dinoroseobacter shibae DFL 12] Length = 261 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 +AG L N ++E N S + + + + Y V+ E++ Sbjct: 174 SLAGFTNAKGLEAIGSNL--FMESNASGPPLIGVPGEDGLGTFRQGYLEASSVDAVREVT 231 Query: 450 FLIKVEQSYNISNKLIMFTDKML 472 LI+ ++ Y +++K++ D+M+ Sbjct: 232 ELIEAQRGYELNSKVMTAADQMM 254 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 14/151 (9%), Positives = 29/151 (19%), Gaps = 28/151 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------------TIS 46 A + + I N+ N + Y R T Sbjct: 3 ALTIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQVKAPGTINASDGTAL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + L + + + + S Sbjct: 63 PTGVQLGLGVRAAAVTVELSQGSLSQTGGDLDLAIEGKGYLEV------TLPSGASAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 L+ S E + ++ + Sbjct: 117 DGSLKRSAEGLIVTSDGYPVVPEIVIPEGTM 147 >gi|327399355|ref|YP_004340224.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411] gi|327181984|gb|AEA34165.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411] Length = 137 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 MS+ N A + + + I NI NAD + Y RRD + Sbjct: 1 MSIFDSMNIASSGMSAQRLRMNIISSNIANADTVRTPEGGPYKRRDVVFEAIGY 54 Score = 37.7 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E++ LI ++Y + +I + +Q L ++ Sbjct: 103 EMTNLIDAMRTYQANASVIDSAKQTIQAALGILR 136 >gi|163850063|ref|YP_001638106.1| flagellar basal body rod protein FlgG [Methylobacterium extorquens PA1] gi|218528666|ref|YP_002419482.1| flagellar basal body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240137197|ref|YP_002961666.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254559209|ref|YP_003066304.1| cell-distal portion of basal-body rod biosynthesis protein [Methylobacterium extorquens DM4] gi|163661668|gb|ABY29035.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218520969|gb|ACK81554.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240007163|gb|ACS38389.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254266487|emb|CAX22251.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens DM4] Length = 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 8/157 (5%) Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 + + + Y +P+ L + + + A + Sbjct: 114 YTRAGSFNKNNAGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAKIDGQVA------L 167 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +N +A + L + E S + + V + + + Y V+ Sbjct: 168 QNVGQLTLANFANDSGLEPLGNGL--YRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVD 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +E++ LI ++++ +++K+I D+M T+ +G++ Sbjct: 226 PVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/249 (8%), Positives = 46/249 (18%), Gaps = 29/249 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + + T Sbjct: 3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQEAV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99 V R L + + + + + + S Sbjct: 63 PEGAMLGLGVRAAAIR---NLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEIQYTRAGS 119 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + ++E Y+ + + I T E Q F +V Sbjct: 120 FNKNNAGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAKIDGQVALQNVGQLTLANFA 179 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + L + + + S + + I Sbjct: 180 NDSGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLITAQRA 239 Query: 220 YTSDGTTLF 228 + + + Sbjct: 240 FEMNSKVIQ 248 >gi|226225711|ref|YP_002759817.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] gi|226088902|dbj|BAH37347.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] Length = 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 2/172 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + + + S I ++ + Sbjct: 93 LDIAIEGEGFFQIQLPSGETAYSRDGSLQISDQGVLVTSAGYALQPPVRIPDDASEFTVS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 A + D +A LL +N + S + + Sbjct: 153 ATGVVSVRRGNDIQPTEIGRIELARFANPSGLLSLGQNLLAP--TAASGQPVVGYPNDAG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + ++ V + +E+ +I ++Y I++K I D+M Q + Sbjct: 211 MGRLQQNSLEGSNVEIVQEMVEMIAAMRAYEINSKAIKTADEMGQIANNIAR 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 14/143 (9%), Positives = 26/143 (18%), Gaps = 15/143 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENK---- 60 A + I N+ N + + R + V EN Sbjct: 4 ALRAAATGMMAQQTRTEVIAHNLANVNTPGFKRSRAHFEDLLYQTVQGQQVLGENDTQIT 63 Query: 61 ---------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDS 110 + I + E + L+ S Sbjct: 64 PAIQVGRGTRLAGVQRLHEQGPIEETGRNLDIAIEGEGFFQIQLPSGETAYSRDGSLQIS 123 Query: 111 LESYSKNLSEDILGKTVIDNAEE 133 + + L V + Sbjct: 124 DQGVLVTSAGYALQPPVRIPDDA 146 >gi|90422390|ref|YP_530760.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104404|gb|ABD86441.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 419 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/414 (10%), Positives = 96/414 (23%), Gaps = 21/414 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52 MSL + A + + S A I NI N+ Y + Sbjct: 1 MSLSGALSSAISALSAQSSAMAMISDNIANSQTVGYKTTSASFQALVTSSSSATTYSSGG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT S + +L +SA F + ++ ++ Sbjct: 61 VTTLSRSNISEQGLLTTTTSATDIGISGNGFFPVTTALTG----GSTLYTRSGSFTIDDS 116 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 Y + L D + + +++ E A + L Sbjct: 117 GYLVSSGGAYLLGWRTDADGNITGSADSNNLEPINTAVAATSGSASTETKFALNLPADAA 176 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + + + S S N T+ T + Sbjct: 177 TDATFTSSMSVYDSLGTASSIQVTWTKTGSNTW--SASFGNPTLSSDSTTSTGTTTGSAT 234 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 N + + ++ + + G S+ + G L Q N Sbjct: 235 ITFNEDGSLASQSATDISVAWSTGAATSTIALNFGTVGGTDGLTQKASGETTPSINLTSI 294 Query: 293 MARVLIGSFSEKDPIAGN-------SENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + L + + S + Sbjct: 295 ESDGLAYGKLSSIAVGDDGKVNATYSNGETIAIYKIPVATFSAPDQLVAKSNGLYAASAA 354 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + ++ G+ ++ + A D + + + + A + + V+ Sbjct: 355 SGTAMVQASGTNGAGTIYGGELEASTSDTNQEFSNMISAQQAYSAAAQVMSAVS 408 >gi|289577407|ref|YP_003476034.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] gi|289527120|gb|ADD01472.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] Length = 266 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + P G + +++ + + Sbjct: 111 YYTRDGSFKLSADGNTLMLVTADGYPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + LL N + S + + + + T V Sbjct: 171 TREVATLGIYNFVNPQGLLSVGNNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNV 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y I++K I D+ML + Sbjct: 229 QVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/261 (8%), Positives = 60/261 (22%), Gaps = 25/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A + I N+ N + + R + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVL------GPDGTVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + + L + D +V + V + + K + Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGTTREV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 V + + ++ + Q + + +++ V Sbjct: 175 ATLGIYNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEM 234 Query: 224 GTTLFETVPRDINFEKMNSYT 244 + +IN + + + Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255 >gi|126730134|ref|ZP_01745946.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] gi|126709514|gb|EBA08568.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] Length = 261 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +AG L N ++E S Q + + Y Sbjct: 164 QAQAQLLGQFTLAGFANAKGLEAIGSNL--FVETEASGPAIQSTPGQDGLGTLRQGYLED 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ +E++ LI+ ++ Y +++K+I D+ML Sbjct: 222 SSVDAVKEITDLIEAQRGYELNSKVISAADQML 254 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 28/150 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQMARAGTVNASNGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + + + L A + + + + Sbjct: 63 PTGIQLGLGVRPAAVSVQLSQGALSATGGDLDVAIEGNGYLEV------TLPSGQAAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ + E + + + Sbjct: 117 DGGLKRTGEGLIVTSDGHPVAPEITIPDDA 146 >gi|254455211|ref|ZP_05068645.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] gi|198263495|gb|EDY87768.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] Length = 267 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 73/267 (27%), Gaps = 8/267 (2%) Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + T++FE N ++ S S+ S G Sbjct: 1 MFGTILSGMSTSMFEISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSI 60 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + Q R + + D + + + NS+ + G+ Sbjct: 61 VEQTRQNTKQGALMERDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGV 120 Query: 335 SETICVNPQYRSNP------SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y + + + + Y + K Sbjct: 121 LRSSTNDIVYGFDGIGGTTLQKIVIPFVNETDTKLTSIEVGSDGLIEATYGEQGPKVAGQ 180 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 VA +L + + S + + F + VNL EL Sbjct: 181 LAVATFANASSLQQL--GLGSFQASQASGAPSFGIAGSEGFGSVQVGKLEASNVNLTTEL 238 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTL 475 + LI+ +Q ++ S++++ M++ L Sbjct: 239 TSLIRAQQQFSGSSRILQAYSDMIEKL 265 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/139 (7%), Positives = 29/139 (20%), Gaps = 11/139 (7%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--------- 57 F + + + + + + N+ NA + + + + T Sbjct: 2 FGTILSGMSTSMFEISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSIV 61 Query: 58 --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +N L + S + Sbjct: 62 EQTRQNTKQGALMERDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGVL 121 Query: 116 KNLSEDILGKTVIDNAEEV 134 ++ + DI+ + Sbjct: 122 RSSTNDIVYGFDGIGGTTL 140 >gi|146341904|ref|YP_001206952.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. ORS278] gi|146194710|emb|CAL78735.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. ORS278] Length = 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 4/185 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + I D T ++ Q R + Sbjct: 80 SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTYQYTRDGTFQMDNQGRIVTAQGNPVQPT 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 ++ + V L N Sbjct: 140 ISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQLQVTRFINKAGLQPVGNNQFTD--TPS 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + +Q I++ V++ E+S LI +++Y ++ K+I D+M+Q+ Sbjct: 198 SGAPQDGIANQDGLGSITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMMQST 257 Query: 476 LEGVK 480 + Sbjct: 258 TALFR 262 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/241 (7%), Positives = 48/241 (19%), Gaps = 36/241 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N + ++ Sbjct: 3 ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQSSDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F + Sbjct: 63 PVGIDIGGGVKTVGTPRS---MTQGTLSQTGNDLDLAISGEGFFKIL------MPDGTYQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--EL 158 + + + + T+ N+ + + I +L Sbjct: 114 YTRDGTFQMDNQGRIVTAQGNPVQPTISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQL 173 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 +++ V N+ +S +Q + + + V + + Sbjct: 174 QVTRFINKAGLQPVGNNQFTDTPSSGAPQDGIANQDGLGSITQGSLEQANVDVVSEMSEL 233 Query: 219 V 219 + Sbjct: 234 I 234 >gi|299538001|ref|ZP_07051287.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] gi|298726583|gb|EFI67172.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] Length = 279 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 79/279 (28%), Gaps = 5/279 (1%) Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 + +T + T E + + + N D + Sbjct: 4 TMITATNTMGQLQNKLDTISNNIANSNTTGYKTKEASFNELLYQQFNNDKQDRAERQTPV 63 Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 G G + ++ + Q ++ + + + + EN Sbjct: 64 GIRYGSGAMVGQIKS-NEKQGSLQTTNRDLDLAFTKAKQYFNILMPDGENGTETVYTRQG 122 Query: 324 KDLDNKLCQGISETICVNPQYRSNPSF--LRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 + L G + +N + + +V K + + L + + Sbjct: 123 DFYLSPLNNGTVMLVTAEGYPVANVAGQAITLPDTVQKFAVRDGGVLEASYPNGDIIRTN 182 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 P + + + N +L ++ + Sbjct: 183 LAVTEFQKPQLMEHVAGSYMGLPNNLAELGYTQAEVLTELVGANRQQIG-MQSGTLEMSN 241 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VNL +E++ LI+ ++SY + + + D+ML L+ G++ Sbjct: 242 VNLSKEMTELIQTQRSYQFNARAVTLADQMLG-LINGIR 279 Score = 43.9 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 15/44 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N + +I NI N++ Y ++ Sbjct: 1 MLRTMITATNTMGQLQNKLDTISNNIANSNTTGYKTKEASFNEL 44 >gi|209547928|ref|YP_002279845.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533684|gb|ACI53619.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 262 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 10/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + + R + Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + F ++ + Sbjct: 63 PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113 Query: 101 THYISKLRDSLESYSKNLSED 121 + + + Sbjct: 114 YTRAGAFNKNDQGQLVTIDGY 134 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 87 TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146 Query: 365 VKNLAGYPDLINHYC--DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ + +A L N + E S + Sbjct: 147 TELTISRSGQVSAKLPGAADATVLGQLTLADFVNEAGLQPLGDNL--FQETAASGEAVVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253 >gi|307266107|ref|ZP_07547652.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] gi|306918889|gb|EFN49118.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] Length = 266 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + P G + +++ + Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 D + + LL N + S Q + + + Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPGTRDDFQGRMGKVMQGFL 223 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V + +E+ +I +++Y I++K I D+ML + Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ I N+ N + + R + Sbjct: 1 MMRALWSVATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ + Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + + L + D+ +V + V + + K + + Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 V + ++ ++ + Q + + +++ V Sbjct: 175 ATLGIYNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEM 234 Query: 224 GTTLFETVPRDINFEKMNSYT 244 + +IN + + + Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255 >gi|119947175|ref|YP_944855.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37] gi|119865779|gb|ABM05256.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37] Length = 261 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 53/206 (25%), Gaps = 2/206 (0%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 P + ++ + ++ +V + + + F D Sbjct: 51 QPGASVDGQNKLPTGLQLGNGVRVVGTQKVYTQGSIQNTSQELDLAILGAGFFQIENSDG 110 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + Q+ + + +V + + Sbjct: 111 TIMFSRNGQFHLNAEGQFVNTQGLSLIPQVNVPQGATSVSIAIDGKVSAVIPGQTELEQI 170 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 + L+ N S + + I + V + E Sbjct: 171 GEITLVTFMNPSGLMAKGGNLFS--ATESSGAANELTAGLDGAGIIKQGALEGSNVQVVE 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +++Y +S K++ D+ML Sbjct: 229 EMVDMISTQRAYEMSAKMVSAADEML 254 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 31/155 (20%), Gaps = 33/155 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + ++ + +I N+ N + + R + Sbjct: 1 MNSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSIQKQPGASVDGQN 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V VV + + S + L F ++ Sbjct: 61 KLPTGLQLGNGVRVVGTQKV---YTQGSIQNTSQELDLAILGAGFFQIEN------SDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + E N L V Sbjct: 112 IMFSRNGQFHLNAEGQFVNTQGLSLIPQVNVPQGA 146 >gi|146341930|ref|YP_001206978.1| putative flagellar hook protein flgE [Bradyrhizobium sp. ORS278] gi|146194736|emb|CAL78761.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. ORS278] Length = 601 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/418 (10%), Positives = 100/418 (23%), Gaps = 5/418 (1%) Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L A + + + + + S + D Sbjct: 189 ATGTLVAAGGLNSADLSNVPLPVGTNFYADATTTGGTAVNKNAANITTSTLLSGGAATDS 248 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + A ++ L+++ V TA Sbjct: 249 ITSNFTSGDTITLTGSAGDVVTFSFVSSGASGTQINVGDSVGTLLAKVAAVTGVSPTITA 308 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K H + + + + G + + N Sbjct: 309 GKITLHSGSGEDWTMTSASTGFTALGLTSPVALTRTASAGTGIVIGNDLTNFNNETISGG 368 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302 T S ++ + + S+ K + V Sbjct: 369 AVTTYNSAGTPVNVQLRWAKTDSSTLGTGHKDTWNLFYQTNSSATGSTVAWQNVGTNFTF 428 Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 D + + + + + S + S + Sbjct: 429 ASDGSLTSPTTSSISIPNVVVDGTTLGTVSLNISSGALTQYASTIGSATINNISQNGFAA 488 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++++A I S + V + N T A + + ++S + Sbjct: 489 GQLQSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIG 548 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 IS ++ +E + LI +Q+Y+ + K+I + M+Q LL ++ Sbjct: 549 AS-----GKISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR 601 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/446 (8%), Positives = 87/446 (19%), Gaps = 22/446 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54 M + N + + + S +I NI NA Y T +P Sbjct: 1 MGIFDAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGG 60 Query: 55 QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108 + K + S A F +++ S D+ + + Sbjct: 61 VTAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKATSVVDNVPVFTGVTNYTRRGDFQ 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + N + L +D + + + Sbjct: 121 LNANGNLINGAGYYLMGVAVDAKTGNATGNVPT----------VLQFANNFVPAQATTAI 170 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228 + AS + A L L + + D Sbjct: 171 QYAANLPTQPKTGASGNAATGTLVAAGGLNSADLSNVPLPVGTNFYADATTTGGTAVNKN 230 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + T + SN D + ++ + G V + + V Sbjct: 231 AANITTSTLLSGGAATDSITSNFTSGDTITLTGSAGDVVTFSFVSSGASGTQINVGDSVG 290 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + G + G S Sbjct: 291 TLLAKVAAVTGVSPTITAGKITLHSGSGEDWTMTSASTGFTALGLTSPVALTRTASAGTG 350 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + + + Y G T + + + Sbjct: 351 IVIGNDLTNFNNETISGGAVTTYNSAGTPVNVQLRWAKTDSSTLGTGHKDTWNLFYQTNS 410 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434 + + + ++ Sbjct: 411 SATGSTVAWQNVGTNFTFASDGSLTS 436 >gi|330953721|gb|EGH53981.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 244 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 50/234 (21%), Gaps = 8/234 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60 FN + A++ NI N + + S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S + + E Y N S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSSN 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 L +D VV + +++ ++ + + I+N S + + Sbjct: 122 MKLQGYNVDANGSVVTGALS---DLRVNASNLEPKATTTITNSANLNSTTALPTVSTFDA 178 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 T + + + N + DG ++ + Sbjct: 179 TDTNSYNVKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTT 232 >gi|187918167|ref|YP_001883730.1| flagellar basal body rod protein FlgC [Borrelia hermsii DAH] gi|119861015|gb|AAX16810.1| flagellar basal-body rod protein FlgC [Borrelia hermsii DAH] Length = 152 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M L + N A + I NI N + +Y R+ + Sbjct: 1 MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50 Score = 43.9 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVEFPNVNAVEEMVDMISASRAYEANSTVINSSKSMFRSALSILQ 151 >gi|312112590|ref|YP_003990906.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|311217691|gb|ADP76295.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 285 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 8/207 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + D + + + + RVLI + I L + G +++ + Sbjct: 85 GAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQNVLMLVTSD 144 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + N P+ +D + +N S + + Sbjct: 145 GNPVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRIMRRVNIGVTSILRPQLLQSAGN 204 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + + + N + + + +++ V+L EL+ ++ Sbjct: 205 NIWTLPDFNALNVNAADVAVNMTGNLRAQIG-------MTQGALEQSNVDLGTELTDMMI 257 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 E+SY ++ + I +D+ML L+ G++ Sbjct: 258 TERSYQLNARSISISDQMLG-LINGIR 283 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 18/46 (39%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 M +L A N QQ I NI N++ + RR+T Sbjct: 1 MHVLRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGEL 46 >gi|328948267|ref|YP_004365604.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] gi|328448591|gb|AEB14307.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] Length = 264 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 9/221 (4%) Query: 267 VPKGKIKALLQIRDSVVP---IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323 K+ D+V P + + A I + +++ + Sbjct: 46 YQNVKLAGTPATEDTVTPVGHQMGSGVKVGATQRIMTQGSLQATGVDTDVAVVGDGFFRV 105 Query: 324 KDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 + D + V+ +N + + + F +++ + Sbjct: 106 QQYDGSWAYTRDGSFKVDSTGQLVTANGLRVMPEIIMPEGFQLETLSISDGGRVNIKVNG 165 Query: 381 SFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + V L N + N S + Sbjct: 166 ELEPVEVGQLELYRFPNAVGLENTGDNL--YKVTNASGEPIAGRPGIDGMGITKHKFLEM 223 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E+ +I +++Y ++K I +D MLQT + Sbjct: 224 SNVSVVNEMVQMIVAQRAYEFNSKAIQTSDNMLQTAAGLKR 264 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A N +I N+ N + + + Sbjct: 1 MVRSLWNAATGMNGQQMNIDTISNNLSNVNTTGFKQHRAEFEDLLYQNVKLAGTPATEDT 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + M L A + F +++ + + Sbjct: 61 VTPVGHQMGSGVKVGATQRI---MTQGSLQATGVDTDVAVVGDGFFRVQQ------YDGS 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + + +I Sbjct: 112 WAYTRDGSFKVDSTGQLVTANGLRVMPEIIMP 143 >gi|307718596|ref|YP_003874128.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM 6192] gi|306532321|gb|ADN01855.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM 6192] gi|315186391|gb|EFU20151.1| flagellar basal-body rod protein FlgC [Spirochaeta thermophila DSM 6578] Length = 152 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMT 43 M L N A + I NI NA + + R + Sbjct: 1 MGLFTPINIAATGLTAQRLRMDVISNNIANATTTRTTEGGPFRRSRVVF 49 >gi|222834411|gb|EEE72888.1| predicted protein [Populus trichocarpa] Length = 280 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + V+L +L LI +++Y + + I D ++QTL+ Sbjct: 1 MGTLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLI 48 >gi|326389274|ref|ZP_08210842.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] gi|325994637|gb|EGD53061.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] Length = 266 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + P G + +++ + Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 D + + LL N + S Q + + + Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPGTRDDFQGRMGKVMQGFL 223 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V + +E+ +I +++Y I++K I D+ML + Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/261 (8%), Positives = 63/261 (24%), Gaps = 25/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A I N+ N + + R + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ + Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + + L + D+ +V + V + + K + + Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 V + ++ ++ + Q + + +++ V Sbjct: 175 ATLGIYNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEM 234 Query: 224 GTTLFETVPRDINFEKMNSYT 244 + +IN + + + Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255 >gi|186477699|ref|YP_001859169.1| flagellar basal body rod protein FlgG [Burkholderia phymatum STM815] gi|184194158|gb|ACC72123.1| flagellar basal-body rod protein FlgG [Burkholderia phymatum STM815] Length = 262 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 55/179 (30%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + ++ D + N Q + S Sbjct: 82 TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNSQGQLVTSSGYQVLPAIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 G +++ + A+ + E S + Sbjct: 142 IPQNATSLTIGSDGVVSVTTAGSTATTQIGSLQIATFINPTGLDAKGENLFAETTSSGTP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ +++ Y VN+ +EL +I+ +++Y I++K + +D+MLQTL + Sbjct: 202 NVATPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 8/134 (5%), Positives = 26/134 (19%), Gaps = 15/134 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A N Q +I N+ N + + Sbjct: 1 MNRSLYIAATGMNAQQAQMDTISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + + + L+ + + + Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 108 RDSLESYSKNLSED 121 + + + S Sbjct: 121 QTNSQGQLVTSSGY 134 >gi|148554187|ref|YP_001261769.1| flagellar basal body rod protein FlgG [Sphingomonas wittichii RW1] gi|148499377|gb|ABQ67631.1| flagellar basal-body rod protein FlgG [Sphingomonas wittichii RW1] Length = 262 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 61/196 (31%), Gaps = 2/196 (1%) Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 Q++ A++ ++ + + + D + + Sbjct: 63 FATGTNLGTGVQINGTAKIQTQGALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDGNFN 122 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + + N+ A ++ + +A + Sbjct: 123 RSDDGTIVTADGYHLQPQIQIPENTTNLTIAADGTVSATQAGETTSTELGKIELARFSNP 182 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 L N + E S I +S + VN+ EEL +I+ +++ Sbjct: 183 AGLQAEGNNILT--ETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMIETQRA 240 Query: 458 YNISNKLIMFTDKMLQ 473 Y +++K+I TD+MLQ Sbjct: 241 YEVNSKMISSTDQMLQ 256 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/252 (7%), Positives = 55/252 (21%), Gaps = 18/252 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS A + A+ + + + I N+ N + + R + + Sbjct: 1 MS-NAALHVARTGLDAQNMRMQVIANNLANVNTTGFKRDRASFETLAYQAMTAPGAASSD 59 Query: 61 NMF---------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + + L + Sbjct: 60 STKFATGTNLGTGVQINGTAKIQTQGALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDG 119 Query: 106 KLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 S + L + +N + + + Q + + ++E++ Sbjct: 120 NFNRSDDGTIVTADGYHLQPQIQIPENTTNLTIAADGTVSATQAGETTSTELGKIELARF 179 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 N+ + AS + S + + + ++ T Sbjct: 180 SNPAGLQAEGNNILTETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMIETQR 239 Query: 224 GTTLFETVPRDI 235 + + Sbjct: 240 AYEVNSKMISST 251 >gi|78485810|ref|YP_391735.1| hypothetical protein Tcr_1469 [Thiomicrospira crunogena XCL-2] gi|78364096|gb|ABB42061.1| Flagellar basal-body rod protein FlgG [Thiomicrospira crunogena XCL-2] Length = 263 Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 74/253 (29%), Gaps = 8/253 (3%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L N T +E N + V Q + + + LQ+ V I Sbjct: 19 LATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNEENTFPSGLQLGTGVKAIG 78 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 ++ ++ I G + + D + + + Y Sbjct: 79 VQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDGSFEVNQNGDLVTSSGYLV 138 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 P+ + + A P + F AG+ Sbjct: 139 EPNINIPLNTTEVFISSDGVVSAKEPGNPQPIAVGQLELATFINPAGLEATGK------- 191 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 ++E S + ++ + + + VN EEL +I+ +++Y +++K I Sbjct: 192 -NFYIETLASGAPNVKNPEIEEAGSLLQGALESSNVNTVEELIGMIEAQRTYEMNSKAIS 250 Query: 467 FTDKMLQTLLEGV 479 D M+Q L V Sbjct: 251 AADGMMQYLNNNV 263 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 17/148 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61 + A+ + A+I N+ NA+ Y +NV ++ Sbjct: 1 MNRALYVAKTGLEAQDFRLATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNE 60 Query: 62 ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + +H +A+ L K A D N Sbjct: 61 ENTFPSGLQLGTGVKAIGVQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDG 120 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEE 133 + S ++ + Sbjct: 121 SFEVNQNGDLVTSSGYLVEPNINIPLNT 148 >gi|190890363|ref|YP_001976905.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|218516082|ref|ZP_03512922.1| flagellar basal body rod protein FlgG [Rhizobium etli 8C-3] gi|190695642|gb|ACE89727.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 262 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A + I NI N + + R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R L + + + + F ++ + Sbjct: 63 PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113 Query: 101 THYISKLRDSLESYSKNLSED 121 + + + Sbjct: 114 YTRAGAFNKNDQGQLVTVDGY 134 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 +A L N + E S + + F ++ + Y + V Sbjct: 167 TTVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVGNPDEEGFAYMKQGYLESSNV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + +E++ LI +++Y +++K+I D+M Sbjct: 225 DPVKEITELISAQRAYEMNSKVITTADEM 253 >gi|188582486|ref|YP_001925931.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] gi|179345984|gb|ACB81396.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 263 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 2/189 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 AR + + + + D N + S + Q + +L Sbjct: 76 STARAMSQGPLAQTDKDYDVAIRGEGLFRVRLPDGRNAYTRDGSFDLDAQGQLVTRDGYL 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 D G +V A + + +A V L N ++ Sbjct: 136 LDPGVTVPNTATSVTISATGAVQATLPGQTAPQALGQFQLARFVNKVGLESIGDNL--FV 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E S + F ++ +++ VN E+S LI +++Y +++K++ D+M Sbjct: 194 ETAASGPAITGLPGSEGFGNLQQNWLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQM 253 Query: 472 LQTLLEGVK 480 L T + + Sbjct: 254 LSTTSQMFR 262 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 46/190 (24%), Gaps = 18/190 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 A I NI N Y R+ ++ Sbjct: 3 ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQ---------------DLLYQN 47 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + SS Q +L + AL + + L + + Y + + L + Sbjct: 48 LRRSGSSTSDQNTILPAGLALGS---GVKTTSTARAMSQGPLAQTDKDYDVAIRGEGLFR 104 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + Q D + + + +T+ T Sbjct: 105 VRLPDGRNAYTRDGSFDLDAQGQLVTRDGYLLDPGVTVPNTATSVTISATGAVQATLPGQ 164 Query: 186 DAHDFLDQRD 195 A L Q Sbjct: 165 TAPQALGQFQ 174 >gi|207108815|ref|ZP_03242977.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 167 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/166 (8%), Positives = 31/166 (18%), Gaps = 26/166 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 +L N NI N + + V Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 52 ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 V + K + F + + D Sbjct: 61 AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147 + + ++ V + ++ + +T A +V Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDG 161 >gi|333008281|gb|EGK27755.1| flagellar basal-body rod protein flgG [Shigella flexneri K-272] gi|333019771|gb|EGK39043.1| flagellar basal-body rod protein flgG [Shigella flexneri K-227] Length = 163 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + +S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|168335333|ref|ZP_02693429.1| hypothetical protein Epulo_09785 [Epulopiscium sp. 'N.t. morphotype B'] Length = 270 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/190 (10%), Positives = 47/190 (24%), Gaps = 3/190 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + D + + + + + Sbjct: 82 NLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFKVTTTSDGVIALVTSDGHYVLSTDS 141 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + + + N V L N ++ Sbjct: 142 EPITFDENVLSSQITINSYGGVGYKDSETGEDINIADIMVVQFANAAGLEATGDNL--FV 199 Query: 412 EKNRSDSHDLHMKSQVVFNHI-SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 E S + + + + Y VN+ E+ LI +++Y +++K I D Sbjct: 200 ETAGSGVPLMESEXPTLTKSLLRAGYLEGSNVNIATEMVNLIVAQRAYELNSKAISTADT 259 Query: 471 MLQTLLEGVK 480 ML ++ K Sbjct: 260 MLGQAVQLKK 269 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 21/208 (10%), Positives = 52/208 (25%), Gaps = 30/208 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + +I NI N + + + Sbjct: 1 MMRSLWTAATGMTSQQTHVDTISNNIANVNTVGFKQESVNFKTLLYQNMLPTQQEETTNP 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP- 100 V V + +KN L ++ F A++ + S Sbjct: 61 MLLQMGHGVRVGSI---SKNFGTGNLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFK 117 Query: 101 -----THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 I+ + SE I + +++ + ++ + + D + Sbjct: 118 VTTTSDGVIALVTSDGHYVLSTDSEPITFDENVLSSQITINSYGGVGYKDSETGEDINIA 177 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183 + + E T N ++ + Sbjct: 178 DIMVVQFANAAGLEATGDNLFVETAGSG 205 >gi|157694039|ref|YP_001488501.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194016453|ref|ZP_03055067.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] gi|157682797|gb|ABV63941.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194011926|gb|EDW21494.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] Length = 272 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 6/228 (2%) Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312 +D P G + ++ + Q + E R L +F + Sbjct: 51 QVDEKNAQVANSRLTPDGLRLGTGTMVNASINSLQGSIKETGRDLDVAFGAPSQYMQVNV 110 Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + DG L + + + + + + + + + ++ Sbjct: 111 GGNIRYTRDGSLYLQPGNNRNQVQLVTSEGHPILDENGNEIVLNANFRDI----SIDKNG 166 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 L D+ + V +N + L+ N + + + Sbjct: 167 RLTAISRDNQPNQQVNLGVVQVNNSSALVSEGDNLFSVDGTY-QGALTALNGANRQAIQL 225 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + T V++ +EL+ L+ ++SY ++++ I D+ML L+ ++ Sbjct: 226 QQGALETSNVDMSKELTDLMTTQRSYQMNSRTITMGDQMLG-LVNTIR 272 Score = 40.4 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 78/267 (29%), Gaps = 11/267 (4%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 N A + N +Q I NI N++ Y ++T + R + + +K Sbjct: 6 INAAVS-MNEVQKQLDIISNNIANSETTGYRAKNTRFSEL--------IRQQFNQVDEKN 56 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 +S + L + + + S L + + S+ + ++ G Sbjct: 57 AQVANSRLTPDGLRLGTGTMVNA--SINSLQGSIKETGRDLDVAFGAPSQYMQVNVGGNI 114 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + +VQ + ++ ++ + + + + D TA D Sbjct: 115 RYTRDGSLYLQPGNNRNQVQLVTSEGHPILDENGNEIVLNANFRDISIDKNGRLTAISRD 174 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 ++Q + +S + Y T L + I ++ T Sbjct: 175 NQPNQQVNLGVVQVNNSSALVSEGDNLFSVDGTYQGALTALNGANRQAIQLQQGALETSN 234 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIK 273 + + D + + + Sbjct: 235 VDMSKELTDLMTTQRSYQMNSRTITMG 261 >gi|220930463|ref|YP_002507372.1| hypothetical protein Ccel_3100 [Clostridium cellulolyticum H10] gi|220000791|gb|ACL77392.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 270 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 10/116 (8%), Positives = 25/116 (21%), Gaps = 19/116 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + I N+ N + Y + Sbjct: 1 MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNDAGK 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + S +N + SS + + F + + + Sbjct: 61 PVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRDG 116 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 5/217 (2%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 GK L +VV + S + + G Sbjct: 56 NDAGKPVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRD 115 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + G + N+ L+ P Y D+ + Sbjct: 116 GSFKLSITEDGMKKLTTADGYAVLDNSGEEILFDPEVNISELSVSPRGEMSYKDAEGVSV 175 Query: 387 IFDPVAG---INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 D G L N + + + + + + + + + V Sbjct: 176 PMDQTIGMVIFPNKYALEAVGNNLYS--SNSATGEPVQVSEDENAKSIMKQGFLESSNVQ 233 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ LI +++Y +S+K I +D MLQ + Sbjct: 234 VVDEMVKLIVAQRAYEVSSKAIQSSDDMLQIANNLRR 270 >gi|323139654|ref|ZP_08074696.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] gi|322395086|gb|EFX97645.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] Length = 262 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 38/181 (20%), Gaps = 28/181 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------------IS 46 A + Q I NI N + + R T Sbjct: 3 ALAIAATGMSAQQQNIEVIAHNIANINTTGFKRSRAEFTDLLYQTDRLQGVSNRGRDATV 62 Query: 47 PENVTVV-TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P+ R+ + L + + + + N + Sbjct: 63 PQGAQFGLGVRAAAVRSLQQQGPLTNTGNMYDLSMNGRGWFQIL------GSDNETLYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + +L T+ + + + S + + +++ Sbjct: 117 AGSFSTNNNGQLVTVDGYLLTPTITIPNNTLNVSVSQSGIVSAIVAGQTQPQQIGQLTVA 176 Query: 164 R 164 Sbjct: 177 N 177 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 2/178 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + + D + + S + N Q + +L Sbjct: 87 TNTGNMYDLSMNGRGWFQILGSDNETLYTRAGSFSTNNNGQLVTVDGYLLTPTITIPNNT 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 NV + + VA L N + E S + Sbjct: 147 LNVSVSQSGIVSAIVAGQTQPQQIGQLTVANFANESGLEALGGNL--FRETYASGQPIVG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F I++ Y + V+ +EL LI ++++ +++K+I D+M T+ +G++ Sbjct: 205 IPGDPGFGVINQGYLESSNVDPVKELVSLISAQRAFELNSKVIQAADEMAGTISKGIR 262 >gi|291334316|gb|ADD93977.1| flagellar basal body rod protein FlgG [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 257 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +A + L N ++ S F + + Y + Sbjct: 160 NDIAQEVGQISIANFSNPRGLTPIGENF--FVPSAESGVAQEGAPLDGGFGKVLQGYVES 217 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 VN+ ++L +I+ +++Y +S+K I D+M+Q Sbjct: 218 SNVNVVQQLVDMIETQRAYEVSSKSITAVDEMMQ 251 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 38/160 (23%), Gaps = 33/160 (20%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------------- 45 + A+ N + I N+ N + + R Sbjct: 1 MHVAKTGLNAQQYKMQVIANNLANVNTTGFKRDRANFESLFYQIVKTAGAQTADDTALTS 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V VV+ + L + +++ Q F A Sbjct: 61 PLAVGTGVKVVSTQKL---FTQGGLVSTDNSLDLAIDGQGFFQ------ALLPDGRVGYT 111 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 L + E S +L + A+ N +T+ Sbjct: 112 RSGILSRNAEGVLTTTSGYVLQPQIQLPADATSINVSTTG 151 >gi|167645396|ref|YP_001683059.1| flagellar basal body rod protein FlgG [Caulobacter sp. K31] gi|167347826|gb|ABZ70561.1| flagellar basal-body rod protein FlgG [Caulobacter sp. K31] Length = 262 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + F+ + + + + + Q + + G Sbjct: 87 TMTNNEFDVAIQGKGFLQILLPSGETAYTRAGNFSTNDQGQIVTEDGYTVQPGITIPANA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + + + +A L N ++E S + ++ Sbjct: 147 TATIISKTGLVQVKMDGNPAPQTVGQLELANFMNEGGLEAIGNNM--YMETAASGAANIA 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Q F + ++Y+ V+ E++ LI +++Y +++K+I D+MLQT Sbjct: 205 APGQQGFGTLLQNYTEASNVDSVSEITSLIVAQRAYEMNSKVITTADQMLQTTSNL 260 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 10/184 (5%), Positives = 31/184 (16%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A I NI N + + R Sbjct: 3 ALRTAATGMAAQQLNVEVISNNIANMNTVGFKRGRAEFQDLLYQTIERAGAQSSGDGNVV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + ++ ++ + F + + Sbjct: 63 PTGVQVGGGVKTGSVYRIHEQ---GTPTMTNNEFDVAIQGKGFLQIL------LPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + A + + K+ + + ++ Sbjct: 114 YTRAGNFSTNDQGQIVTEDGYTVQPGITIPANATATIISKTGLVQVKMDGNPAPQTVGQL 173 Query: 161 SNLR 164 Sbjct: 174 ELAN 177 >gi|291540627|emb|CBL13738.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 272 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 79/272 (29%), Gaps = 5/272 (1%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 D + + + +++ + I + + Sbjct: 6 YTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEEKPISA 65 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + S+ E A S + G D + ++ Sbjct: 66 QVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNA 125 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + +N G ++K + + GY + Y D +F Sbjct: 126 GGTLTLCTNEGYPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMNQTIGLF 185 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 N L + N + + ++ + + + + + + Y V + +E+ Sbjct: 186 ----QFNNPGGLEKTGTNLLA-VTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADEM 240 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y +++K I +D+ML+ + Sbjct: 241 VNLIIAQRAYQLNSKAITTSDEMLEQANNLKR 272 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 27/125 (21%), Gaps = 14/125 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 ++ A +I N+ N + Y + + + E Sbjct: 1 MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLR 108 + Q + ++ F + A + + Sbjct: 61 KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120 Query: 109 DSLES 113 S+ + Sbjct: 121 WSVNA 125 >gi|188579867|ref|YP_001923312.1| flagellar basal body rod protein FlgG [Methylobacterium populi BJ001] gi|179343365|gb|ACB78777.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 262 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 2/172 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + + S Q + + D + V Sbjct: 93 LDLAVNGRGYFQITSPAGEINYTRAGSFNKNNAGQLVTMEGYAVDPAILIPANTTQVTIN 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 +N +A L + E S + + V Sbjct: 153 ESGQVFAKTDGQVALQNIGQLTLANFANESGLEPLGNGL--YRETPASGAPVVGNPGDVS 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + Y V+ +E++ LI ++++ +++K+I D+M T+ +G++ Sbjct: 211 YGKLQQGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/249 (8%), Positives = 48/249 (19%), Gaps = 29/249 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + + T Sbjct: 3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGAPNQAGQEAV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99 V R L + + + + + ++ S Sbjct: 63 PEGAMLGLGVRAAAIR---NLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEINYTRAGS 119 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + ++E Y+ + + I T E Q F + +V Sbjct: 120 FNKNNAGQLVTMEGYAVDPAILIPANTTQVTINESGQVFAKTDGQVALQNIGQLTLANFA 179 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + L + + + S + + I Sbjct: 180 NESGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLITAQRA 239 Query: 220 YTSDGTTLF 228 + + + Sbjct: 240 FEMNSKVIQ 248 >gi|323704841|ref|ZP_08116418.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] gi|323535767|gb|EGB25541.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] Length = 266 Score = 62.4 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + + P G ++ +++ + D Sbjct: 111 YYTRDGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ + LL+ N + S Q ++ + + T V Sbjct: 171 QQDVATLGIYNFQNPDGLLDKGDNL--YEATAASGDPGTRDDFQGRMGNVRQGFLETSNV 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + E+ +I +++Y +++K I D ML + Sbjct: 229 QVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 266 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 22/262 (8%), Positives = 66/262 (25%), Gaps = 25/262 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A + N I N+ N + + R + Sbjct: 1 MIRALWSAASGMNAQQLNVDVISNNLANVNTTAFKRDRAEFQDLIYQTLQTEDVNGGQGK 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ N+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVL------GPDGNTYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S++ + L+ + D + + + + + K + ++ Sbjct: 115 DGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGTQQDV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 D + K + ++A + + +++ V Sbjct: 175 ATLGIYNFQNPDGLLDKGDNLYEATAASGDPGTRDDFQGRMGNVRQGFLETSNVQVVNEM 234 Query: 224 GTTLFETVPRDINFEKMNSYTV 245 + ++N + + + Sbjct: 235 VNMIAAQRAYELNSKAIQAADD 256 >gi|219685599|ref|ZP_03540415.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] gi|219672877|gb|EED29900.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] Length = 282 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 23/153 (15%), Gaps = 40/153 (26%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + + + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L S+ + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 E S + Sbjct: 111 IQTSYGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|209963565|ref|YP_002296480.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] gi|209957031|gb|ACI97667.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 4/209 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 + QL + S +EN + + + Sbjct: 52 GSESSDQDTIVPAGIQLGLGVKPAAVSRMHGQGPLTPTENDYDVALDGRGYFVITLPNGD 111 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + T N Q + + G + N N +F G Sbjct: 112 TAYTRAGNFQLSPEGTIVTVDGYTVSPNITVPDNTRKVAINRNGEVLAFIDGQTEPENVG 171 Query: 394 INTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 T + A + E S L + Q+ + I + Y VN+ +E++ Sbjct: 172 QFEVATFVNEAGLEAMGDNLFRETPASGIPILGIPGQLGYGGIRQGYVEAANVNIVQEIT 231 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 LI +++Y ++++++ D+ML T+ + Sbjct: 232 SLISAQRAYEMNSRVVEAGDQMLNTVTQM 260 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 10/47 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 N A I NI N + + R V Sbjct: 3 TLNIAATGMMAQQLNVEVISNNIANLNTVGFKRSRAEFQDLMYQAQV 49 >gi|213421404|ref|ZP_03354470.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 197 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +++ A+ + I N+ N + R+ + T Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P + + T + + LH+ + + S Sbjct: 61 TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + + + A + Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147 >gi|89056684|ref|YP_512135.1| flagellar basal body rod protein FlgG [Jannaschia sp. CCS1] gi|88866233|gb|ABD57110.1| flagellar basal-body rod protein FlgG [Jannaschia sp. CCS1] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 59/206 (28%), Gaps = 8/206 (3%) Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + D V Q+ R + + + G + + I Sbjct: 51 AGAINASDGTVVPAGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSG 110 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + T Q + + + G + + N + + I + Sbjct: 111 DNAYTRDGALQRTGDGLIVTNDGFEVNPGITIPDDAQEITINANGEVFASFRGEIQPQLL 170 Query: 393 G------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 G + L N +LE S + + + Y V+ Sbjct: 171 GQLNMVRFTNDNGLEAIGSNL--FLETGASGAPLAGDPGEDGMGTFRQGYVEQSSVDAVR 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E++ LI+ ++ Y ++ K++ D++L Sbjct: 229 EITDLIEAQRGYELNAKVLTAADQIL 254 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 50/245 (20%), Gaps = 23/245 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + A + + I NI N Y R Sbjct: 3 ALDIAATGMSAQQLRVDVISNNIANMSTTGYSPRRADFADLHYQQMVRAGAINASDGTVV 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102 P V + L A + + + + + + + + Sbjct: 63 PAGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSGDNAYTRDGALQR 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L + + + N I + F + E+Q + N Sbjct: 123 TGDGLIVTNDGFEVNPGITIPDDAQEITINANGEVFASFRGEIQPQLLGQLNMVRFTNDN 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + + D + + S + + I Y Sbjct: 183 GLEAIGSNLFLETGASGAPLAGDPGEDGMGTFRQGYVEQSSVDAVREITDLIEAQRGYEL 242 Query: 223 DGTTL 227 + L Sbjct: 243 NAKVL 247 >gi|326202442|ref|ZP_08192311.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987560|gb|EGD48387.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 270 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 50/217 (23%), Gaps = 27/217 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A + I N+ N + Y + + Sbjct: 1 MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNGGGK 60 Query: 50 ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-- 101 S +N + S + + F + + + Sbjct: 61 PVNLQVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRDGSFKL 120 Query: 102 -----HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + N +IL + +E V + + + + + Sbjct: 121 SITEDGMKKLTTSDGYAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSVPMDQT 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 ++ ++ E V N+ +A+ D+ Sbjct: 181 IGMVTFPNKYALE-AVGNNLYSSNSATGEPLQVSEDE 216 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 5/217 (2%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 GK L +VV + GS + + G Sbjct: 56 NGGGKPVNLQVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRD 115 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 + + + GG + L+ P Y ++ + Sbjct: 116 GSFKLSITEDGMKKLTTSDGYAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSV 175 Query: 387 IFDPVAG---INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 D G L N + + + + + + + + + V Sbjct: 176 PMDQTIGMVTFPNKYALEAVGNNLYS--SNSATGEPLQVSEDENAKSIMKQGFLESSNVQ 233 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ LI +++Y +S+K I +D MLQ + Sbjct: 234 VVDEMVKLIVAQRAYEVSSKAIQSSDDMLQIANNLRR 270 >gi|229917022|ref|YP_002885668.1| hypothetical protein EAT1b_1296 [Exiguobacterium sp. AT1b] gi|229468451|gb|ACQ70223.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/178 (9%), Positives = 55/178 (30%) Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 + F+ + L + +D G++ + + + + Sbjct: 75 ADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNMQLSVGDETTLVDVN 134 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 G+ N + D + + + + L N Sbjct: 135 GNPLLGDDGNPITMPNDATNQRIRQDGVVVASVNGVEQEFGRLDIVEVRNTSELRPLGDN 194 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + N + E + V+L +E++ + +++Y ++++ + +D+M+ Sbjct: 195 VFAADLETEVDRPLGNLLIEGTLESSNVDLTKEMTDMTITQRAYQMNSRAMSMSDQMM 252 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 10/135 (7%), Positives = 27/135 (20%), Gaps = 22/135 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 + N + +Q NI N D + R+ + Sbjct: 3 SIYNSVNSLSQLQRQLDVTGHNIANVDTVGFKRQQGHFASLLSQAYNNQPRPEFEVGRDT 62 Query: 47 PENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + + + + + + + + Sbjct: 63 PNGIRIGVGGHVADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNMQL 122 Query: 104 ISKLRDSLESYSKNL 118 +L + N Sbjct: 123 SVGDETTLVDVNGNP 137 >gi|296135673|ref|YP_003642915.1| fagellar hook-basal body protein [Thiomonas intermedia K12] gi|295795795|gb|ADG30585.1| fagellar hook-basal body protein [Thiomonas intermedia K12] Length = 414 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/479 (9%), Positives = 100/479 (20%), Gaps = 71/479 (14%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + F A + AS + NI NA+ + + S T + Sbjct: 2 STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADSYAAAIAGTSPQYGQVGIG 61 Query: 65 KVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + Q + + L ++ + + + Y + + Sbjct: 62 TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L T + + Sbjct: 122 GGQLIGTPAVSG---------------------------------VLTGGSGPLQITTTT 148 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + + IS + + + + +L + + Sbjct: 149 LAPKATTSGTLGLNLNASSTPISSGTTFNINDPTSYNYSTTATVYDSLGTSHLLTTYYAL 208 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 + T + N + SS G L Sbjct: 209 TSGSTDGQKWNVYYSVDGTTSSGSGIT-------------------SGGPLTIQFTSTGA 249 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 G G + + + + S+ L + Sbjct: 250 ISGTASGTIGPLSWADGASGSTIALNFAGSTNYNATSVVNSLTTDGSSVGQLSNLSIDPS 309 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + Y + + + L N ++ S Sbjct: 310 GV------------VFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNY--FVPTYASGQP 355 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + S V+L +L LI +Q+Y + + I ++++QTLL Sbjct: 356 LTGQPGGGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLLSL 414 >gi|304317903|ref|YP_003853048.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779405|gb|ADL69964.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 266 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + + P G ++ +++ + D Sbjct: 111 YYTRDGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNPDGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 ++ + LL N + S + Q ++ + + T V Sbjct: 171 QQDIATLGIYNFQNPNGLLNKGNNL--YEATAASGAPGTRDDFQGKMGNVVQGFLETSNV 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + E+ +I +++Y +++K I D ML + Sbjct: 229 QVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 266 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/262 (8%), Positives = 67/262 (25%), Gaps = 25/262 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 ++ A + N I N+ N + ++ R Sbjct: 1 MIRALWSAASGMNAQQLNVDVISNNLANVNTTSFKRDRAEFQDLMYQTLQTEDVNAGQGK 60 Query: 51 -----TVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ N+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVL------GPDGNTYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S++ + L+ + D + + + + + K + ++ Sbjct: 115 DGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNPDGTQQDI 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 + + K + ++A ++ + +++ V Sbjct: 175 ATLGIYNFQNPNGLLNKGNNLYEATAASGAPGTRDDFQGKMGNVVQGFLETSNVQVVNEM 234 Query: 224 GTTLFETVPRDINFEKMNSYTV 245 + ++N + + + Sbjct: 235 VNMIAAQRAYELNSKAIQAADD 256 >gi|172057890|ref|YP_001814350.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum 255-15] gi|171990411|gb|ACB61333.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum 255-15] Length = 132 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPENV 50 MS+ + F+ + + ++ NI NA Y R+ + + V Sbjct: 1 MSMFSGFHTSATGLTAQRLRLDTVSANIANAQTTRGELVNGEWQPYARKLAVLKETGSGV 60 Query: 51 TVVTQRSENKNM 62 TV R + + Sbjct: 61 TVSEIRKDQEPF 72 >gi|327478811|gb|AEA82121.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 10/185 (5%), Positives = 41/185 (22%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + + ++ + A++ N+ N + + + Sbjct: 1 MNSALWVSKTGLAAQDKAMATVANNLANVNTNGFKSDRAVFEDLFYVIEKQPGAQADEIN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + + + + + F ++ + Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIVGRGFFQVE------APNGDIFY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + E N L + + + D +I+ Sbjct: 115 TENGQFQLNAEGMMVNAQGLPLNPAIEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 46/178 (25%), Gaps = 4/178 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-YRSNPSFLRDGGS 356 + + + ++ + + + +N + N L + Sbjct: 80 VFTEGSIQTTGQPMDLAIVGRGFFQVEAPNGDIFYTENGQFQLNAEGMMVNAQGLPLNPA 139 Query: 357 VSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + D+ + L N + E Sbjct: 140 IEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNPGGLEALGGNL--YRETVA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + + + + V + E + +I ++++Y + K++ M Q Sbjct: 198 SGEPVEGVPGEEGLGQLKQGVLEGSNVQVVEAMVAMIAIQRAYEANAKVLDAASGMQQ 255 >gi|254462012|ref|ZP_05075428.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678601|gb|EDZ43088.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + + +AG L N ++E S + + + Y Sbjct: 164 TAQAQLLGQFTLAGFTNAKGLEAIGSNL--FMETEASGPSQVTTPGTDGLGTLRQGYLED 221 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ E++ LI+ ++ Y ++ K+I D+ML Sbjct: 222 SSVDAVREVTELIEAQRGYELNAKVITAADQML 254 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 27/139 (19%), Gaps = 28/139 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALKIAATGMSAQQMRVEVISNNLANMSTTGYNTRRAEFADLHYQQMSRAGTINASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + + L A +S + Q + + S Sbjct: 63 PTGVQLGLGVRPSSVSVYLAQGSLSATNSDLDVAIDGQGYLKV------TMPSGASAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDI 122 L+ + E Sbjct: 117 DGALKRNAEGLIVTNDGYP 135 >gi|51599026|ref|YP_073214.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] gi|51573597|gb|AAU07622.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] Length = 282 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 24/153 (15%), Gaps = 40/153 (26%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + + + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L S+ + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|219684370|ref|ZP_03539314.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] gi|219672359|gb|EED29412.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] Length = 282 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.0 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 24/153 (15%), Gaps = 40/153 (26%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + + + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L S+ + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|254994099|ref|ZP_05276289.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064] Length = 208 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 34/152 (22%), Gaps = 14/152 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58 + A + N Q + NI NA+ Y ++ + + + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQ----------SFEALKEMMSADDHYNNSPTHYISKLR 108 M + + + + ++ D+ N Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140 S +Y + D V+ Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQ 152 >gi|254460576|ref|ZP_05073992.1| flagellar basal body FlaE domain protein [Rhodobacterales bacterium HTCC2083] gi|206677165|gb|EDZ41652.1| flagellar basal body FlaE domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 267 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 76/267 (28%), Gaps = 8/267 (2%) Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + + T++FE N + + S S G Sbjct: 1 MFGTILSGMSTSMFEISVVSNNVANAGTTAFRKSNASFADLYNGTSPETVSRTATGTGSI 60 Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 + Q R S + D + + + NS+ P ++ + G+ Sbjct: 61 VEQTRQSAKQGGMMERDGVLNMALAGNGMFVTTTPNSDGTPSEVLSFTRDGEFSLDENGV 120 Query: 335 SETICVNPQYRSNP------SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + Y + L + +++ Y + Sbjct: 121 LRSSKNDIVYGYDGLGGRGMQQLVVPFQNEDGAKLTALEVGSDGEMLATYGSEDPRLVGQ 180 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 +A + + + E S L + F I + V+L E+ Sbjct: 181 IAIALFPNTTAMRQM--GMNRFKESRESGELVLGVAGSEGFGSIQTGALESSNVDLTTEM 238 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTL 475 + +I+ +Q ++ S++++ M++ L Sbjct: 239 TSMIRAQQQFSGSSRILQTYTDMIEKL 265 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 9/141 (6%), Positives = 28/141 (19%), Gaps = 11/141 (7%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVTQ 55 F + + + + + + N+ NA + + + T Sbjct: 2 FGTILSGMSTSMFEISVVSNNVANAGTTAFRKSNASFADLYNGTSPETVSRTATGTGSIV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 ++ + + S + Sbjct: 62 EQTRQSAKQGGMMERDGVLNMALAGNGMFVTTTPNSDGTPSEVLSFTRDGEFSLDENGVL 121 Query: 116 KNLSEDILGKTVIDNAEEVVQ 136 ++ DI+ + Q Sbjct: 122 RSSKNDIVYGYDGLGGRGMQQ 142 >gi|146305252|ref|YP_001185717.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] gi|145573453|gb|ABP82985.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 46/178 (25%), Gaps = 4/178 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + ++ + + S +N + + Sbjct: 80 VFTEGSIQTTGQPMDLAIIGNGFFQVEAPNGDIYYTESGQFQLNAEGVIVNAQGLPLVPG 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + G ++ +A L N + E Sbjct: 140 IEVPAGSSRFTVGSDGIVTAVMAGETLPVELGQITLANFANPGGLEALGGNL--YRETVA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 S + ++ + V + E + +I ++++Y + K++ M Q Sbjct: 198 SGEPVEGTPGEDGLGNLKQGVLEGSNVQVVEAMVNMIAIQRAYEANAKVLDAASGMQQ 255 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 8/152 (5%), Positives = 34/152 (22%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + + ++ + +++ N+ N + + + Sbjct: 1 MSSALWVSKTGLAAQDKAMSAVANNLANVNTTGFKSDRVVFEDLFYAIELQPGAQADQVN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + + + + F ++ + Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGNGFFQVE------APNGDIYY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + + + E N L + A Sbjct: 115 TESGQFQLNAEGVIVNAQGLPLVPGIEVPAGS 146 >gi|225159023|ref|ZP_03725333.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] gi|224802402|gb|EEG20664.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] Length = 261 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 66/240 (27%), Gaps = 9/240 (3%) Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305 + + G SS S ++A + S QL ++ Sbjct: 25 GNNIANVNTTGYKSSSASYSDSFSNTLRAATSVDSSRQTGTGVQLAGISTNYTQGSISTT 84 Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK-----K 360 ++ + + + + + Y N S LR S S Sbjct: 85 GVSTDLAISGEGYFIVQDPNSGAQYITRDGSFKFDDNGYLVNASGLRVLDSASAPIQIPT 144 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 K+++ + +A + L++ N + + Sbjct: 145 TGVQSKSISSNGAVSYVDTAGVTHTVATVGLAQVADQAKLMKEGGNLYDYSATTVA---- 200 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V+L EL +I ++ S+ + +++ +D + ++ + Sbjct: 201 IGIPGSNGTGAFKTYSLELSKVDLTAELPNMITMQGSFQANARMVTVSDTIFDDIVNMKR 260 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 43/182 (23%), Gaps = 19/182 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTIS 46 M+L+ + + +N ++ I NI N + Y R T S Sbjct: 1 MALIGTLTSSVSALSNFTEGLEVIGNNIANVNTTGYKSSSASYSDSFSNTLRAATSVDSS 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + T V + N + + + + +++ + Sbjct: 61 RQTGTGVQLAGISTNYTQGSISTTGVSTDLAISGEGYFIVQD-----PNSGAQYITRDGS 115 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + Y N S + + + + + + D Sbjct: 116 FKFDDNGYLVNASGLRVLDSASAPIQIPTTGVQSKSISSNGAVSYVDTAGVTHTVATVGL 175 Query: 167 LS 168 Sbjct: 176 AQ 177 >gi|307945666|ref|ZP_07661002.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] gi|307771539|gb|EFO30764.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] Length = 260 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 3/182 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-SNPSFLRDGGS 356 I S + + + I+ D + +P Sbjct: 80 IMSQGAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSFERDPNGTLVTVDGYTVVPG 139 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 ++ ++ + N +A L N + E S Sbjct: 140 ITIPEDSRNITISTDGTVSAVDAGGATVNLGQIQLARFVNKAGLEAIGDNL--FYETEAS 197 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + F ++ + + V+ E++ LI +++Y +++++I D+M T Sbjct: 198 GPAQVDNPGGNGFGNVQQYFLEMANVDAVTEIADLISAQRAYEMNSRVIKAADEMYSTTS 257 Query: 477 EG 478 Sbjct: 258 NL 259 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 23/134 (17%), Gaps = 16/134 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50 + A + I N+ N Y R+ + + V Sbjct: 3 ALHIAATGMKAQERNVEVISNNVANLRTTGYKRQRVDFQDLMYQNLRRAGSETSTAGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q + A+ Q E + + Sbjct: 63 PTGVQIGSGVKVAATSRIMSQGAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSFER 122 Query: 110 SLESYSKNLSEDIL 123 + + Sbjct: 123 DPNGTLVTVDGYTV 136 >gi|260428875|ref|ZP_05782852.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45] gi|260419498|gb|EEX12751.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45] Length = 130 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQR 56 MS + + + + + + + NI N D Y R+ S V +V Sbjct: 1 MSDFSNALSVSSSGLRAQASRLRIVSENIANVDTPGYHRKTIPFETSGNARDGVQMVETG 60 Query: 57 SEN 59 + Sbjct: 61 RVD 63 >gi|89895709|ref|YP_519196.1| hypothetical protein DSY2963 [Desulfitobacterium hafniense Y51] gi|89335157|dbj|BAE84752.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 312 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 2/124 (1%) Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 P+ + L+ D N +P + L Y Sbjct: 182 PTAFAVPEGAEDVQISTEGVLSATIDGSRQTLGQINIVTFANPEGLVRDGDNL--YFAPD 239 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + VNL ++ +I+V+++Y ++ ++I Sbjct: 240 TAGVTGDELVGTPGSQVEERTLGKLRTQSLEGSNVNLASAMTEMIQVQRAYQLNARMITN 299 Query: 468 TDKM 471 D+M Sbjct: 300 GDQM 303 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 29/325 (8%), Positives = 75/325 (23%), Gaps = 38/325 (11%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPEN--------------------VTVVTQRSENK 60 + N+ N + Y + + V + + Sbjct: 1 MDILGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQLVGERIDVGAGVIYPTIDT 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + ++ + + F + S + + N Sbjct: 61 DYRQGIIRETENPFDLAIDGEGFFPV------RTANGESRYTRVGNFELDSQGKLVNSDG 114 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 IL V A+ + + + I + + +++ + ++ Sbjct: 115 YILE--VKIPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVGPIDMDELG- 171 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFE 238 D+L + G + + ++ T DG TL + Sbjct: 172 -------RPLDWNGDILPTAFAVPEGAEDVQISTEGVLSATIDGSRQTLGQINIVTFANP 224 Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + + GV G+ + + + L ++R + L +I Sbjct: 225 EGLVRDGDNLYFAPDTAGVTGDELVGTPGSQVEERTLGKLRTQSLEGSNVNLASAMTEMI 284 Query: 299 GSFSEKDPIAGNSENVPGLFIADGI 323 A N ++ Sbjct: 285 QVQRAYQLNARMITNGDQMWSMANS 309 >gi|219684534|ref|ZP_03539477.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr] gi|219685765|ref|ZP_03540576.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04] gi|219671896|gb|EED28950.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr] gi|219672704|gb|EED29732.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04] Length = 152 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|167945179|ref|ZP_02532253.1| hypothetical protein Epers_01140 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 126 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 2/125 (1%) Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 +V + + ++ +A L N + E Sbjct: 2 QPAMTVPNDATSVTIGSDGIVSVLQAGNTDPTQIGQIELAYFANPQGLEPIGDNL--FRE 59 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + + + VN+ EEL +I+ +++Y +++K I TD+ML Sbjct: 60 SAASGGVNTAIPGSDSTGTLMQGALESSNVNVVEELVNMIETQRAYEMNSKAISTTDEML 119 Query: 473 QTLLE 477 + Sbjct: 120 SYINN 124 >gi|16126303|ref|NP_420867.1| flagellar basal body rod protein FlgG [Caulobacter crescentus CB15] gi|221235080|ref|YP_002517516.1| flagellar basal body rod protein FlgG [Caulobacter crescentus NA1000] gi|13637955|sp|Q06172|FLGG_CAUCR RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|13423543|gb|AAK24035.1| flagellar basal-body rod protein FlgG [Caulobacter crescentus CB15] gi|220964252|gb|ACL95608.1| flagellar basal-body rod protein flgG [Caulobacter crescentus NA1000] Length = 262 Score = 62.0 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 12/166 (7%), Positives = 30/166 (18%), Gaps = 35/166 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + + R+ Sbjct: 3 ALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + S + + + + + Sbjct: 63 PTGVQVGGGVKAGSVYRITEQ---GTPTLTDSPLDLAIQGKGYMPIL------LPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + I + + + VQ Sbjct: 114 YTRAGNFSTNDQGQIVT-EDGYLVQPGITIPQNATDITISKSGLVQ 158 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 2/168 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + ++ + + + + + Q + +L G + ++ Sbjct: 91 SPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQGQIVTEDGYLVQPGITIPQNATDIT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +A L N +LE S + L + Sbjct: 151 ISKSGLVQVKLDGQPQPQTVGQIQLANFLNEGGLEAIGDNL--FLETAASGAATLAAPGE 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 F + + Y+ V+ E++ LI +++Y +++K+I D+MLQ Sbjct: 209 PGFGMLLQHYTEASNVDAVSEITALITAQRAYEMNSKVISTADQMLQA 256 >gi|225548842|ref|ZP_03769819.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] gi|225370445|gb|EEG99881.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] Length = 282 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNTVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 14/208 (6%), Positives = 36/208 (17%), Gaps = 34/208 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + E S + + T ++ Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFESDP 173 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183 L + + + I Sbjct: 174 KRLVSEYENSWENYELLDTIRIVNFENP 201 >gi|240144760|ref|ZP_04743361.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203281|gb|EEV01566.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534610|emb|CBL07722.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] Length = 272 Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 79/272 (29%), Gaps = 5/272 (1%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 D + + + +++ + I + + Sbjct: 6 YTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEEKPISA 65 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + S+ E A S + G D + ++ Sbjct: 66 QVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNA 125 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + +N G ++K + + GY + Y D +F Sbjct: 126 GGTLTLCTNEGYPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMNQTIGLF 185 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 N L + N + + ++ + + + + + + Y V + +E+ Sbjct: 186 ----QFNNPSGLEKTGTNLLA-VTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADEM 240 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y +++K I +D+ML+ + Sbjct: 241 VNLIIAQRAYQLNSKAITTSDEMLEQANNLKR 272 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 27/125 (21%), Gaps = 14/125 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49 ++ A +I N+ N + Y + + + E Sbjct: 1 MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLR 108 + Q + ++ F + A + + Sbjct: 61 KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120 Query: 109 DSLES 113 S+ + Sbjct: 121 WSVNA 125 >gi|224531802|ref|ZP_03672434.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116] gi|224511267|gb|EEF81673.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116] Length = 152 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|170742325|ref|YP_001770980.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196599|gb|ACA18546.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 263 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 2/173 (1%) Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + + D + S + Q S +L + V Sbjct: 92 TYDVAIRGEGLFQITMPDGRTAYTRDGSFDLDAQGQIVSRDGYLLNPAITVPNNATAVTI 151 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 A + +N +A V L N ++E S Sbjct: 152 SASGLVQATLPGQTAPQNLGQIQLARFVNKVGLESIGDNL--FIETQASGPAIQGNPGTE 209 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F + +SY VN E+S LI +++Y +++K++ D+ML T + + Sbjct: 210 GFGSLQQSYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTSQMFR 262 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 9/153 (5%), Positives = 25/153 (16%), Gaps = 16/153 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD- 64 A I NI N Y R+ + + Sbjct: 3 ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGTATSDQGNQL 62 Query: 65 ---------------KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + + + ++ + + + Sbjct: 63 PAGLALGSGVKTTSTARVMSQGTLSSTEKTYDVAIRGEGLFQITMPDGRTAYTRDGSFDL 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 + + +L + + S Sbjct: 123 DAQGQIVSRDGYLLNPAITVPNNATAVTISASG 155 >gi|304321132|ref|YP_003854775.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] gi|303300034|gb|ADM09633.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] Length = 238 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 30/144 (20%) Query: 19 QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78 + I NI NA + + + + + S + Q Sbjct: 17 KAVQMIANNIANASTPGFKSEGAIFSEYVSEGRSLATSLSMGRFVGQSTDYASGPLKQTG 76 Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 F E LE + + + L Sbjct: 77 GTYDFAIQGEGFFKVSTPAGERLTRAGSYTTDLEGVIVDPAGNPLLDEGGGEITIPPDAV 136 Query: 139 NTSAREVQKIRADADKEIELEISN 162 + + + D + ++ + Sbjct: 137 SVGVGQDGTLSVDGEIFAKIGVYT 160 >gi|296447438|ref|ZP_06889363.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] gi|296255058|gb|EFH02160.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] Length = 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 39/216 (18%), Gaps = 16/216 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENKNMF 63 A N Q I NI N + + R T Sbjct: 3 ALAIAATGMNAQQQNIEVISNNIANINTTAFKRSRAEFTDLLYQADRLQGVSNRGRDATV 62 Query: 64 --------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + L S L + + Sbjct: 63 PEGAQTGLGVRLTAIRSLQTQGSLAQTGNQLDLALNGRGWFQVTGPDSEILYTRSGSFST 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + ++ T+I V + + S I + + +++ Sbjct: 123 NANGQLVTGDGYLVSPTIIIPNNAVSVSVSQSGLVTAVIGGQTNPQQLGQLTIANFANES 182 Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 F+ D IS+ Sbjct: 183 GLEALGGNLFRQNQASGTPVVGVPGDPGYGVISQYY 218 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 8/224 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 +++ + Q R+ + + N L + Sbjct: 41 TDLLYQADRLQGVSNRGRDATVPEGAQTGLGVRLTAIRSLQTQGSLAQTGNQLDLALNGR 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 I T + +N + G + + N + + Sbjct: 101 GWFQVTGPDSEILYTRSGSFSTNANGQLVTGDGYLVSPTIIIPNNAVSVSVSQSGLVTAV 160 Query: 383 N------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + +A L N + + S + + + + IS+ Y Sbjct: 161 IGGQTNPQQLGQLTIANFANESGLEALGGNL--FRQNQASGTPVVGVPGDPGYGVISQYY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + V+ +EL LI ++++ +++K+I D+M T+ +G++ Sbjct: 219 LESSNVDSVKELVNLIAAQRAFELNSKVISAVDEMAGTVSKGIR 262 >gi|225552253|ref|ZP_03773193.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1] gi|225371251|gb|EEH00681.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1] Length = 152 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLAAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|51598553|ref|YP_072741.1| flagellar basal body rod protein FlgC [Borrelia garinii PBi] gi|51573124|gb|AAU07149.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 152 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ ++ + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVVNSSKSMFRSALAILQ 151 >gi|298507080|gb|ADI85803.1| flagellar basal body rod protein FlgF [Geobacter sulfurreducens KN400] Length = 242 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 12/133 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTVVT 54 + + A + A ++ + N+ N + + + + T Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 SE D ++ Q + + + Sbjct: 61 VYSETAFFTDHSR----GSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGK 116 Query: 115 SKNLSEDILGKTV 127 + Sbjct: 117 LVTADGYEVSGGG 129 Score = 40.4 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + V+ +E+ LI+ ++ + + +K I D M Sbjct: 192 VRQGHLEYSNVSAIQEMVQLIETQRFFEMCSKAIKAYDDM 231 >gi|15594638|ref|NP_212427.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi B31] gi|195941353|ref|ZP_03086735.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi|216264936|ref|ZP_03436928.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a] gi|218249308|ref|YP_002374816.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7] gi|221217671|ref|ZP_03589139.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a] gi|223888936|ref|ZP_03623527.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b] gi|224533191|ref|ZP_03673791.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23] gi|224533682|ref|ZP_03674270.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a] gi|225549042|ref|ZP_03770017.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a] gi|225550067|ref|ZP_03771027.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a] gi|226320594|ref|ZP_03796154.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805] gi|2494521|sp|Q57466|FLGC_BORBU RecName: Full=Flagellar basal-body rod protein flgC gi|1165277|gb|AAA85616.1| FlgC [Borrelia burgdorferi] gi|1196316|gb|AAB51408.1| flagellar basal body rod protein [Borrelia burgdorferi] gi|2688173|gb|AAC66655.1| flagellar basal-body rod protein (flgC) [Borrelia burgdorferi B31] gi|215981409|gb|EEC22216.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a] gi|218164496|gb|ACK74557.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7] gi|221192348|gb|EEE18567.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a] gi|223885752|gb|EEF56851.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b] gi|224511918|gb|EEF82319.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23] gi|224512975|gb|EEF83338.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a] gi|225369179|gb|EEG98632.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a] gi|225370268|gb|EEG99706.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a] gi|226234013|gb|EEH32734.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805] gi|312147876|gb|ADQ30535.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi JD1] gi|312149272|gb|ADQ29343.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi N40] Length = 152 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|327441420|dbj|BAK17785.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 279 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 77/275 (28%), Gaps = 7/275 (2%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 T + + T + + + + N +D V + G Sbjct: 9 TNTLSQLQHQLDTISTNIANSNTTGFKAQQANFTEMLYQQFNNDELDRTVRDTPVGIRYG 68 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 G L+Q + Q ++ L + + N E Sbjct: 69 VGAQIGLIQS-NQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGDVRTAYTRNGSFYVT 127 Query: 329 KLCQGISETICVNPQYRSNPSF---LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 + GI + + ++ + + +A Y + Sbjct: 128 QNEPGILSLVNSDGYQVADANGQPITFPDNVTGFTMDSDGSLVASYENGTPLKFQLGISE 187 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 V T + N DL ++ V + + V++ Sbjct: 188 LQKPNVMEKLQGGTYIGLPENLDALGFTQAQVLTDLQGANRQVG--VQKGALEMSNVDVS 245 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +E++ LI+ ++SY + + I D+ML L+ G++ Sbjct: 246 KEMTNLIQAQRSYQFNTRAITIADQMLG-LINGIR 279 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 45/185 (24%), Gaps = 8/185 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A N + Q +I NI N++ + + T + N + Sbjct: 1 MLRTMVSATNTLSQLQHQLDTISTNIANSNTTGFKAQQANFTEMLY-------QQFNNDE 53 Query: 63 FDKVLHAHSSAIGQQRLLQ-SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 D+ + I Q + + N ++ +N D Sbjct: 54 LDRTVRDTPVGIRYGVGAQIGLIQSNQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGD 113 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + V QN V I+ + ++ Sbjct: 114 VRTAYTRNGSFYVTQNEPGILSLVNSDGYQVADANGQPITFPDNVTGFTMDSDGSLVASY 173 Query: 182 ASKHD 186 + Sbjct: 174 ENGTP 178 >gi|326386930|ref|ZP_08208544.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] gi|326208610|gb|EGD59413.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] Length = 270 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 49/191 (25%), Gaps = 2/191 (1%) Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 L + S + N G + + T + P Sbjct: 81 DLMISGDGFFTTSSAVTGQVYYTRNGSFSMDGQGYLTDGSGNRLQVFPTDSSGNVTSTTP 140 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 + + + ++ +A + Y D N +A L + ++ Sbjct: 141 GSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNSVIGKVALASFVAPQGLKQVGSSNY 200 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 S + S + + V+L E+ LI +Q + + K I Sbjct: 201 TSTGI--SGTATYGQPSTGQYGSLMSGSLEASNVDLSSEMVNLITAQQYFQANAKAIDAN 258 Query: 469 DKMLQTLLEGV 479 + ++ Sbjct: 259 TTINDAIINLK 269 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 71/268 (26%), Gaps = 15/268 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55 + + + NA + I NI NAD + + + T Sbjct: 2 SYYTSLSGLQNAQTDLSVIGNNIANADTNGFKKSSVDFSNLVAASAFTNPKNIVGIGSTV 61 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 +S N++ + SA+ F + + Y Sbjct: 62 QSINQDFAQGGVKQTGSALDLMISGDGFFTTSSAV-----TGQVYYTRNGSFSMDGQGYL 116 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + S + L D++ V SA+ A + ++ +S N Sbjct: 117 TDGSGNRLQVFPTDSSGNVTSTTPGSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNS 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 I + A L Q + I G +T + + G+ V Sbjct: 177 VIGKVALASFVAPQGLKQVGSSNYTSTGISGTATYGQPSTGQYGSLMSGSLEASNVDLSS 236 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQ 263 + + ++N ID ++ Sbjct: 237 EMVNLITAQQYFQANAKAIDANTTINDA 264 >gi|94969950|ref|YP_591998.1| flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] gi|94552000|gb|ABF41924.1| Flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] Length = 263 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 3/184 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 E + F + D + + ++ Sbjct: 82 TQGEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQFHLDAQGNVVTSDGNQLQPSLT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + A + + + VA L +N +L S Sbjct: 142 IPADAQTISIGADGTVTVTQPGQTQAQQVGSIQVASFANPGGLNSIGKNL--FLATTASG 199 Query: 418 SHDLHMKSQV-VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + + V++ +E +I ++SY ++K++ ++MLQ L Sbjct: 200 DPTIGTPGGAEGAGTLQQGVLEQANVSVVDEFIQMILAQRSYEANSKVVTAANEMLQNLN 259 Query: 477 EGVK 480 + Sbjct: 260 TMAR 263 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/174 (7%), Positives = 30/174 (17%), Gaps = 15/174 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A +I N+ NA + R VV + + Sbjct: 1 MFRALYTAATGMTAQQLNLDNIANNLSNASTAGFRARRLQFQDLMYQNMVVPGSAATQQT 60 Query: 63 F---------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + L L + + + Sbjct: 61 TVASGLQVGLGTRPTASETLQTQGEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + L ++ A+ + + I Sbjct: 121 HLDAQGNVVTSDGNQLQPSLTIPADAQTISIGADGTVTVTQPGQTQAQQVGSIQ 174 >gi|39998143|ref|NP_954094.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985089|gb|AAR36444.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] Length = 242 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 12/133 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTVVT 54 + + A + A ++ + N+ N + + + + T Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 SE D ++ Q + + + Sbjct: 61 VYSETAFFTDHSR----GSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGK 116 Query: 115 SKNLSEDILGKTV 127 + Sbjct: 117 LVTADGYEVSGGG 129 Score = 40.0 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + Y V+ +E+ LI+ ++ + + +K + D M Sbjct: 192 VRQGYLELSNVSAIQEMVQLIETQRFFEMCSKAVKAYDDM 231 >gi|150388210|ref|YP_001318259.1| hypothetical protein Amet_0370 [Alkaliphilus metalliredigens QYMF] gi|149948072|gb|ABR46600.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 264 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 L RN + E S + + I + + T V + +E+ +I Sbjct: 181 FLNPQGLESVGRNL--YKETVASGEEIPME-GEGRTSSILQGFLETSNVQIVDEMVKMIT 237 Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++Y S+K I D+ML + Sbjct: 238 AQRAYETSSKTIQTADEMLGMANNLRR 264 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 22/108 (20%), Gaps = 12/108 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVV 53 A + ++ N+ N + Y + T + + V Sbjct: 3 ALWTAASGMKAQQLNIDTVANNMANVNTTAYKAQRTEFKDLLYANMKRTNLNNGQGSPVN 62 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 Q + + Q E A + N Sbjct: 63 LQVGHGVMPVATSRMFTTGNLEQTANPLDVAIDGEGFLAIEGPNGEIY 110 >gi|296331269|ref|ZP_06873741.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676256|ref|YP_003867928.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151384|gb|EFG92261.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414500|gb|ADM39619.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 269 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 4/145 (2%) Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 N + + D + ++KN+ + D V +N Sbjct: 129 ANANQLQLVTGNGNPVLDENGNTVNIDSSMKNITINKNGTLTASDGSAVQRFNLGVVQVN 188 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N + + + + + I + V++ E+++ LI + Sbjct: 189 NPQELKSEGNNLFS---IDNAAAFEQLNGANRQNIGIEQGSLEMSNVDISEQMTDLITSQ 245 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 +SY ++++ I D+ML L+ V+ Sbjct: 246 RSYQLNSRTITMGDQMLG-LINSVR 269 Score = 40.8 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N QQ +I N+ N++ Y +DT + Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44 >gi|111115607|ref|YP_710225.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|216263707|ref|ZP_03435702.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] gi|110890881|gb|ABH02049.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|215980551|gb|EEC21372.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] Length = 282 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETEALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/211 (5%), Positives = 34/211 (16%), Gaps = 40/211 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + ++ + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L + + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTGNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + E S + + T ++ Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFE 170 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 L + + + + I Sbjct: 171 SNPRRLVSEHENSWENYELLDTIRIVNFENP 201 >gi|262653|gb|AAB24739.1| flagellar basal body distal rod protein [Caulobacter vibrioides] Length = 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/166 (7%), Positives = 30/166 (18%), Gaps = 35/166 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + I NI N + + R+ Sbjct: 3 ALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + S + + + + + Sbjct: 63 PTGVQVGGGVKAGSVYRITEQ---GTPTLTDSPLDLAIQGKGYMPIL------LPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + I + + + VQ Sbjct: 114 YTRAGNFSTNDQGQIVT-EDGYLVQPGITIPQNATDITISKSGLVQ 158 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 2/168 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + ++ + + + + + Q + +L G + ++ Sbjct: 91 SPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQGQIVTEDGYLVQPGITIPQNATDIT 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +A L N +LE S + L ++ Sbjct: 151 ISKSGLVQVKLDGQPQPQTVGQIQLANFLNEGGLEAIGDNL--FLETAASGAATLVRRAS 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + V+ E++ LI +++Y +++K+I D+MLQ Sbjct: 209 RALACCCSTDTEASNVDAVSEITALITAQRAYEMNSKVISTADQMLQA 256 >gi|167038783|ref|YP_001661768.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256751340|ref|ZP_05492219.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300913632|ref|ZP_07130949.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307723353|ref|YP_003903104.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] gi|166853023|gb|ABY91432.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256749722|gb|EEU62747.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300890317|gb|EFK85462.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307580414|gb|ADN53813.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] Length = 251 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 66/252 (26%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 +L A + ++ + N+ N + Y R +T+ P Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNIPPN 60 Query: 49 --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V T + N + + + F + + S Sbjct: 61 GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVDTPNGQRYTRDGSF 117 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T + E Y + + D + + + N + + V ++R + Sbjct: 118 TLSKDGHLVTKEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + T + + + ++ IS + ++ V Sbjct: 178 KEGNNLFFIDNSTNVQVIPVTGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234 Query: 221 TSDGTTLFETVP 232 + TL + V Sbjct: 235 IAFDETLGKAVN 246 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V I + + VN +E+ +I V ++Y + K+++ D+ L + Sbjct: 197 VTGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246 >gi|218460753|ref|ZP_03500844.1| flagellar basal body rod protein FlgG [Rhizobium etli Kim 5] Length = 244 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 +A L N + E S + + F ++ + Y + V+ Sbjct: 150 TVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVGNPDEEGFGYMKQGYLESSNVD 207 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKM 471 +E++ LI +++Y +++K+I D+M Sbjct: 208 PVKEITELISAQRAYEMNSKVITTADEM 235 Score = 43.9 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 21/125 (16%), Gaps = 34/125 (27%) Query: 22 ASIVRNIENADNKNYVRRDTMTTIS-------------------------PENVTVVTQR 56 I NI N + R T V R Sbjct: 1 EVIANNIANINTTGSKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGVQTSAVR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 L + + + + F ++ + + + Sbjct: 61 ---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTLYTRAGAFNKNDQGQLV 111 Query: 117 NLSED 121 + Sbjct: 112 TIDGY 116 >gi|86750896|ref|YP_487392.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris HaA2] gi|86573924|gb|ABD08481.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris HaA2] Length = 262 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 46/181 (25%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + + + I+ D + + R + Sbjct: 82 TQGTLSTTGNDLDLAIRGEGFFKIQMPDGTFSYTRDGSFTTDNTGRIVTANGNPLQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 ++ + + + ++E S Sbjct: 142 IPNGATSITVATNGQVSVTVSGATAPTVLGQIGLTRFINKTGLQPQGDNLFIETQASGPP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 202 QDGIATADGLGDMMQKTLEQANVEVVTEISDLISAQRAYEMNAKVVSAADQMLQSTSNMY 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 42/235 (17%), Gaps = 38/235 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGVDIGGGVKTVGTPRL---MTQGTLSTTGNDLDLAIRGEGFFKIQ------MPDGTFS 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKEIE 157 + + L T+ V + V A Sbjct: 114 YTRDGSFTTDNTGRIVTANGNPLQPTITIPNGATSITVATNGQVSVTVSGATAPTVLGQI 173 Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + + + N I + D D ++QK E + + Sbjct: 174 GLTRFINKTGLQPQGDNLFIETQASGPPQDGIATADGLGDMMQKTLEQANVEVVT 228 >gi|34558066|ref|NP_907881.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483784|emb|CAE10781.1| FLAGELLAR HOOK PROTEIN FLGE [Wolinella succinogenes] Length = 745 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 50/434 (11%), Positives = 111/434 (25%), Gaps = 19/434 (4%) Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 D + + S G+ E S + + N+ Sbjct: 314 DTLYDMNISVSGKLGQKLGLNGNSENFS--SGAVGAYNASATNYEVGAYVMLDNVVYRRT 371 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + N+ + A + L T Sbjct: 372 TSVGNSDPHTDTTNWERIDSSAIEGYNTALAYEVGNVVEQGGLLYRRIGTAGNSDPATNP 431 Query: 184 KHDAHDFLDQRDVLLQ--KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 L + + + N + G + T + + Sbjct: 432 ADWEDLGASATGSLPNYAEGTTYNTNDIVSHNGILYKRTGASGASDPYTDSANWTKVGND 491 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ----LDEMARVL 297 S + T + P + GV V S+ G+ LL + V D + + Sbjct: 492 SRSTTKFAVPSYTSGVEVYSSDGTKYVLQSTYYLLDSGNDGVGERWEVRSAIYDSTGKSM 551 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGS 356 + + + ++ +A +E ++ Y S Sbjct: 552 VSTAPVVHEMTFDNGVASAASVAIPFDGGTITYNPAQTEDGKLSTNYTYVESSVKAKSQD 611 Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS--------I 408 S + + +I + + ++ +A + L + N Sbjct: 612 GSPAGRLDDVGVDSNGRIILTFTNGKSEVMGRVGLAAFVNDQGLQKVGGNMFQMTSISVN 671 Query: 409 GWLEKNRSDSHDLH--MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 G S + L Q+ F + +S T V++ L+ LI +++ Y+ + K Sbjct: 672 GGQPVYSSGAPILAWDETGQLKFGKVLDSMLETSNVDIGAALTELIVLQRGYSFNAKAFT 731 Query: 467 FTDKMLQTLLEGVK 480 D++++ + K Sbjct: 732 TGDELIKEAIGLKK 745 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/477 (8%), Positives = 97/477 (20%), Gaps = 41/477 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50 + A + S+ NI N + Y Sbjct: 1 MNATLFNGLSGILTHQVGLDSVSNNIANVNTTGYRANIPQFETLFAKSMSYINSSSPINN 60 Query: 51 ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--------DDHYNNS 99 VT S + + + + + + S + Sbjct: 61 DFEHGVTVSSNAISNKNGSYKSSDGEFDIAYAGKGWFVVGTQKSGSFDLQNPTVAATQKN 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK----- 154 E Y N S L + E + + Sbjct: 121 YFTRDGSFSRDSEGYLVNASGYYLYGIDLGKISETGTFNASRNEAADNLALSGSNLSPLK 180 Query: 155 ---------EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 + ++ T F A + +D+ ++ Sbjct: 181 IPEDLYYQPTVTTQVGAAVNLNKSATGTGVNEVFLNADGSFDLEAFLAQDMNALMDGDLK 240 Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265 I + + + G T E+ N + E + ++ + Sbjct: 241 LIDALNYKDLTITTTLPSGKT--ESHTFTYGGSGSNGFKTVGELKGLIEAQTGLTLDITR 298 Query: 266 AVPKGKIKALLQIRDSVVPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + +R+ + + ++ + L + + ++ +G + Sbjct: 299 DSSGNPAGCTMSLRNDTLYDMNISVSGKLGQKLGLNGNSENFSSGAVGAYNASATNYEVG 358 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 T V + + S +N +++ + + Sbjct: 359 AYVMLDNVVYRRTTSVGNSDPHTDTTNWERIDSSAIEGYNTALAYEVGNVVEQGGLLYRR 418 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + ++ G L + V N I + G Sbjct: 419 IGTAGNSDPATNPADWEDLGASATGSLPNYAEG-TTYNTNDIVSHNGILYKRTGASG 474 >gi|83589650|ref|YP_429659.1| hypothetical protein Moth_0798 [Moorella thermoacetica ATCC 39073] gi|83572564|gb|ABC19116.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 280 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/277 (10%), Positives = 54/277 (19%), Gaps = 38/277 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ + + Q S+ +I N + Y + + Sbjct: 2 MIGALWRGASGMRAQQVQVDSLANDIANVNTTGYKQVRVGFSDLVYRPVMEAGMPVEQPQ 61 Query: 45 ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V V + K+ L + + F A+ Sbjct: 62 APGSTVSLGTGVKVASI---VKDFSQGALVQTGEPLNLAIQGEGFFAVVN------GAGE 112 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + N L A E + I AD I Sbjct: 113 RFLTRDGNFHRDADGNVVNDGGYYLAI----PAGNNQDVPLNLPPEAENINVAADGTITA 168 Query: 159 EIS-NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 ++ ++ A + + L G S + Sbjct: 169 TVNGQVQPLGQIYLYTVSNPAGLEAVGDNLYRLTPACGQLFYGAPGTAGNSETTGTPGPV 228 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254 + G V +M E N I Sbjct: 229 LGTLRSGYLEAANVDLAATMTRMVVAQRAYELNSRTI 265 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/180 (7%), Positives = 43/180 (23%), Gaps = 3/180 (1%) Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 L + + + +D D + + + + Sbjct: 93 PLNLAIQGEGFFAVVNGAGERFLTRDGNFHRDADGNVVNDGGYYLAIPAGNNQDVPLNLP 152 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV--TLLEYARNSIGWL 411 + + + A + + + L Sbjct: 153 PEAENINVAADGTITATVNGQVQPLGQIYLYTVSNPAGLEAVGDNLYRLTPACGQLFYGA 212 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +S V + Y V+L ++ ++ +++Y ++++ I D+M Sbjct: 213 PGTAGNSETTGTPGP-VLGTLRSGYLEAANVDLAATMTRMVVAQRAYELNSRTIRVADEM 271 >gi|85706171|ref|ZP_01037266.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217] gi|85669335|gb|EAQ24201.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217] Length = 130 Score = 61.6 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + +Q+ + NI NAD Y R+ + + Sbjct: 1 MSDFSNALSVSASGLKAQAQRLVHVSENIANADTPGYRRKTVSFETAFAGSEGTGAVEVS 60 Query: 60 KNMFDKV 66 + D+ Sbjct: 61 RVNLDRR 67 >gi|260429403|ref|ZP_05783380.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] gi|260420026|gb|EEX13279.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] Length = 261 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 58/221 (26%), Gaps = 8/221 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + D + Q+ AR + + ++ + I Sbjct: 41 ADLHYQQIARAGTINASDGTMLPTGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGR 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 T + ++ + G + + ++ Sbjct: 101 GYFEVTLPSGIAGYTRDGALKRNADGMIVTSDGLPVSPEIVIPDDAISLSINAEGEVYAY 160 Query: 383 NKNFIFDPV------AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + + G L N E S Q + Y Sbjct: 161 FADAVQAQLLGQFTIVGFTNPKGLEAIGGNLFT--ETEASGPPIQTTAGQEGLGTFRQGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V+ E++ LI+ ++ Y +++K+I D+ML ++ Sbjct: 219 LEDSSVDPVYEITELIEAQRGYELNSKVISAADQMLGATVQ 259 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 10/151 (6%), Positives = 28/151 (18%), Gaps = 28/151 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQIARAGTINASDGTML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + L + + + + + Sbjct: 63 PTGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGRGYFEV------TLPSGIAGYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 L+ + + + ++ + + Sbjct: 117 DGALKRNADGMIVTSDGLPVSPEIVIPDDAI 147 >gi|258511381|ref|YP_003184815.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478107|gb|ACV58426.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 335 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/254 (9%), Positives = 64/254 (25%), Gaps = 2/254 (0%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L V T + I G + + + Sbjct: 81 LGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTNGTSTYLTRAGNFSVDSAGNLVL 140 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 N + + S + +S N + + ++ + Sbjct: 141 PNGVIALGYEATSLSSSTTSGSTSSSNNSVPPPSTASTTTSSLSSVNLNTWANDWANKYA 200 Query: 347 NPSFLRDGGSVSKKFLWN-VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + +VS L P + + + +A + L+ Sbjct: 201 SGEKVSQVSNVSIGANGALTATLTLTPSSGSGSPSTQTVVLGYLALAQVPNPQGLVSVGD 260 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + + Q + ++ V+L ++ + +I + +Y + +I Sbjct: 261 NLFS-ASSPAAGTPTYWTPGQGTYGTLASGELEGSNVDLSQQFAEMIVAQNAYVANTHMI 319 Query: 466 MFTDKMLQTLLEGV 479 + +LQ L+ Sbjct: 320 GTDNAILQALVNMK 333 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 20/295 (6%), Positives = 56/295 (18%), Gaps = 25/295 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 +L N A + + NI N + + + D Sbjct: 1 MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTAPNP 60 Query: 44 ------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 + T Q + + + + + Sbjct: 61 GTGSSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTNGT 120 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 ++ + I + + +TS+ Sbjct: 121 STYLTRAGNFSVDSAGNLVLPNGVIALGYEATSLSSSTTSGSTSSSNNSVPPPSTASTTT 180 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 +S++ N + S+ + S + Sbjct: 181 SSLSSVNLNTWANDWANKYASGEKVSQVSNVSIGANGALTATLTLTPSSGSGSPSTQTVV 240 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + Y + + ++ + + + + G S +G Sbjct: 241 LGYLALAQVPNPQGLVSVGDNLFSASSPAAGTPTYWTPGQGTYGTLASGELEGSN 295 >gi|312879592|ref|ZP_07739392.1| flagellar basal body rod protein [Aminomonas paucivorans DSM 12260] gi|310782883|gb|EFQ23281.1| flagellar basal body rod protein [Aminomonas paucivorans DSM 12260] Length = 136 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 12/44 (27%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L + I NI N + + + + + Sbjct: 1 MLRSLYSGVSGVKGHQTYLDVIGNNIANVNTTGFKKSNVLFQDL 44 >gi|330983289|gb|EGH81392.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 183 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 30/167 (17%), Gaps = 7/167 (4%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSENKN 61 N + A++ NI N + + Sbjct: 1 NIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVRTA 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + S G L + + E Y N S Sbjct: 61 AVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSNM 119 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 L +D VV + R +NL Sbjct: 120 KLQGYNVDANGSVVTGALSDLRVNASNLDPKATSTITNSANLNSTTP 166 >gi|330893050|gb|EGH25711.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 165 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 10/133 (7%), Positives = 31/133 (23%), Gaps = 4/133 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF-- 63 FN A + + A+++ NI N+ + + + + R+ + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61 Query: 64 --DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ + ++ + Sbjct: 62 ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121 Query: 122 ILGKTVIDNAEEV 134 L + E+ Sbjct: 122 RLQGYAANEQGEI 134 >gi|254421122|ref|ZP_05034846.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] gi|196187299|gb|EDX82275.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] Length = 262 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 2/164 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + + + + + Q ++ + + +V Sbjct: 93 YDMAIDGKGYFQITLPSGEIGYTRAGNLQVNQEGQIVTDDGYALQPAVTIPQDATDVTIS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + +A L N + LE S + ++ Sbjct: 153 KSGLVQVTQAGQTAPTTVGQIELATFFNEAGLEAIGDNLL--LETAASGAANIGTPGSPG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 F I + Y+ V+ E+S LI +++Y +++K+I D ML Sbjct: 211 FGKILQGYTEASNVDSVAEISALIIAQRAYEMNSKVISTADNML 254 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 10/41 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A + I NI N + + ++ Sbjct: 3 ALRTAASGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDL 43 >gi|20806698|ref|NP_621869.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515152|gb|AAM23473.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 251 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51 ++ A + ++ + N+ NA+ Y + + + P Sbjct: 1 MIRGLYTAASGMLAQTKVMDVLANNLANANTVGYKKDIVVLSSFPNLETIREGGDNVPPD 60 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + + L + + F + + + T Sbjct: 61 RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + Y + + D + + N + + V ++R + Sbjct: 121 ADGYLVTKDGYIVLGENGPIRLSQGDVSVDENGNIINNGQLVDRLRIVDFDNYDALRKQG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 VN I T + + + ++ IS + ++ V T+ Sbjct: 181 DNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVN---MISVMRNYESNQKVVTAF 237 Query: 224 GTTLFETVP 232 TL + V Sbjct: 238 DETLGKAVN 246 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K++ D+ L + Sbjct: 199 GRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKAVN 246 >gi|226321611|ref|ZP_03797137.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi Bol26] gi|226232800|gb|EEH31553.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi Bol26] Length = 152 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|311070150|ref|YP_003975073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310870667|gb|ADP34142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 274 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%) Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331 + A + R + + + S + + N A + Sbjct: 73 VGAAMNARLVSDQGSIEKTERDLDIAFTSPYQYLQVNVNGNRQYTRDGALYLTPAAGNDN 132 Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391 Q T P N + + S+ + + L FN + Sbjct: 133 QLQLVTGDGYPVLDENGNPINIDDSMKQITISENGTLTASTGNAGDASQQFNLGVVQ--- 189 Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 +N L N + +L+ ++ I + V++ ++++ L Sbjct: 190 --VNNPQELKSEGNNLFSLNGNAAAALEELNGANRQSIG-IQQGALEMSNVDISKQMTDL 246 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I ++SY ++++ I D+ML L+ V+ Sbjct: 247 ISSQRSYQLNSRTITMGDQMLG-LVNSVR 274 >gi|295688784|ref|YP_003592477.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] gi|295430687|gb|ADG09859.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] Length = 262 Score = 61.2 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 9/184 (4%), Positives = 33/184 (17%), Gaps = 34/184 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A + + I NI N + + R+ Sbjct: 3 ALRTAASGMSAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + + + + + + + + Sbjct: 63 PTGVQVGGGVKAGSVYRITEQ---GTPTLTDNPLDLAIQGKGYLQIL------LPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + + + + + K+ D + ++ Sbjct: 114 YTRAGNFSTNDQGQIVTEDGYTVQPGITVPQNAIDIIISKTGMVQVKLDGDPQPQTIGQL 173 Query: 161 SNLR 164 Sbjct: 174 QLAN 177 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 2/151 (1%) Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + Q + + G + ++ + D + Sbjct: 112 TAYTRAGNFSTNDQGQIVTEDGYTVQPGITVPQNAIDIIISKTGMVQVKLDGDPQPQTIG 171 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A L N +LE S + +L Q F + + Y+ V+ E Sbjct: 172 QLQLANFMNEGGLEAIGDNL--FLETAASGAANLAAPGQPGFGVLMQHYTEASNVDSVSE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ LI +++Y +++K+I D+MLQT + Sbjct: 230 ITALITAQRAYEMNSKVISTADQMLQTTSQM 260 >gi|328948268|ref|YP_004365605.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] gi|328448592|gb|AEB14308.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] Length = 266 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/234 (7%), Positives = 42/234 (17%), Gaps = 23/234 (9%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTM-------TTIS 46 + N + +I N+ N D + RR + Sbjct: 6 YIGASGMNAQQNRLDTISNNLANVDTTGFKKEIPVNKEFSELLLRRTVADGVYKTPFGSA 65 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + + + + E Sbjct: 66 DAVSIIGSI-GLGVETNELYTDFSQGSFKSTDTKTDMALGGEGFFTVQTPAGERYTRNGN 124 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 E + + F + + + + Sbjct: 125 FHLGKEGILLTKEGYPVLGENGAIHVPNDKFFVNQDGMIYTNEDNELVDRIKVVRFENER 184 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + S D+R LLQ +E ++ + + V Sbjct: 185 FLKKQGSSLW-NSNEISGDAYIAEGDERPRLLQGYTEASNVNVVNEMVQMIEVN 237 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 24/44 (54%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + Y+ VN+ E+ +I+V ++Y + K + D M+ TL Sbjct: 214 LLQGYTEASNVNVVNEMVQMIEVNRAYEANQKSVQTEDSMMDTL 257 >gi|254463756|ref|ZP_05077167.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] gi|206684664|gb|EDZ45146.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] Length = 261 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 2/90 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + +A L N E S + + + + + Y V Sbjct: 167 GQLLGQFTLASFTNPKGLEAIGSNLFT--ETEASGAATVTTAGEDGLGTLRQGYLEGSSV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + E++ LI+ ++ Y ++ K+I D+M+ Sbjct: 225 DAVREVTELIEAQRGYEMNAKVISAVDQMM 254 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 31/150 (20%), Gaps = 28/150 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + ++ L ++ + + + S Sbjct: 63 PTGVQVGLGVRPAAVSVHLSQGALQQTNNDLDVAIDGNGYLEV------TLPSGQSAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 L+ S E + + + Sbjct: 117 DGALKRSAEGLIVTSDGFAVSPEITIPDDA 146 >gi|302389656|ref|YP_003825477.1| flagellar basal-body rod protein FlgC [Thermosediminibacter oceani DSM 16646] gi|302200284|gb|ADL07854.1| flagellar basal-body rod protein FlgC [Thermosediminibacter oceani DSM 16646] Length = 147 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 M + + + + I NI N + + Y R+ + Sbjct: 1 MEIFRSLEISASGLTAQRLRMDVISNNIANVNTTRTEEGGPYRRQRVIFQE 51 >gi|52787553|ref|YP_093382.1| FlhP [Bacillus licheniformis ATCC 14580] gi|163119681|ref|YP_080952.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] gi|52350055|gb|AAU42689.1| FlhP [Bacillus licheniformis ATCC 14580] gi|145903191|gb|AAU25314.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] Length = 275 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 51/198 (25%), Gaps = 9/198 (4%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP- 342 + ++ L + G N + Sbjct: 86 GSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQMQLVTKEGHAVL 145 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 N K ++ + P A L Sbjct: 146 DENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEAPLRFNLGIVRAVKPQALTEEGSNLFS 205 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + N + + + + + + + V++ +E++ LI ++SY +++ Sbjct: 206 VSDELRATALINLNGAGRQDI-------SLKQGFLESSNVDVSKEMTDLISSQRSYQMNS 258 Query: 463 KLIMFTDKMLQTLLEGVK 480 + I D+M+ L+ V+ Sbjct: 259 RAITMGDQMMG-LINSVR 275 Score = 40.0 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 17/44 (38%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N +Q +I N+ N D Y ++T + Sbjct: 1 MLRSMITASNTMFELQKQIDNISHNLANTDTTGYKAKNTSFSEL 44 >gi|307266108|ref|ZP_07547653.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] gi|306918890|gb|EFN49119.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] Length = 251 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 66/252 (26%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 +L A + ++ + N+ N + Y R +T+ P Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60 Query: 49 --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V T + N + + + F + + S Sbjct: 61 GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T + E Y + + D + + + N + + V ++R + Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + T + + + ++ IS + ++ V Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234 Query: 221 TSDGTTLFETVP 232 + TL + V Sbjct: 235 IAFDETLGKAVN 246 Score = 41.9 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K+++ D+ L + Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246 >gi|222147571|ref|YP_002548528.1| flagellar basal-body rod protein [Agrobacterium vitis S4] gi|221734559|gb|ACM35522.1| flagellar basal-body rod protein [Agrobacterium vitis S4] Length = 263 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 70/211 (33%), Gaps = 4/211 (1%) Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 + + + S VP N + + + +E+ ++ S + + G + Sbjct: 46 QTEKAVGVANRANQSTVPEGANIGLGVQTAAVRTMNEQGELSETSNELDVAIVGRGYLQV 105 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP-DLINHYCDSFNKN 385 + T S+ + + G + + + Sbjct: 106 QSPDGATTFYTRAGALNKDSDGNLVTTEGYKIIPNITIPTDATEVKISESGEVSVLQGDS 165 Query: 386 FIFDPVAGINTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + + T+ + +IG E S + + + ++ + Y + V Sbjct: 166 STYTTLGQLETSAFVNPAGLKAIGDNLFQETASSGNPINGVPGDAGYGYLKQGYLESSNV 225 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + E++ LI +++Y +++K+I D+M Q Sbjct: 226 DSVTEITSLISAQRAYEMNSKVITTADEMAQ 256 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 27/141 (19%), Gaps = 33/141 (23%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A N I NI N + + + + Sbjct: 3 ALAIASTGMNAQQTNLEVISNNIANINTTGFKKSRAEFSDLLYQTEKAVGVANRANQSTV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V R+ N+ L S+ + + + + ++ + Sbjct: 63 PEGANIGLGVQTAAVRTMNEQ---GELSETSNELDVAIVGRGYLQVQS-----PDGATTF 114 Query: 101 THYISKLRDSLESYSKNLSED 121 L + Sbjct: 115 YTRAGALNKDSDGNLVTTEGY 135 >gi|253702433|ref|YP_003023622.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] gi|251777283|gb|ACT19864.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] Length = 237 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 13/149 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56 + + A + +A ++ I N+ N++ + NV V + Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTAGFKADQIQFESVLANVKNPTQTPVFSND 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + L +A+ + + S Sbjct: 61 RYSTDYSPGALQRTENALDLALDG-------DGFFVVNTPQGPAYTRQGNFFRSQAGRLV 113 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREV 145 N + + A + + EV Sbjct: 114 NADGFEVQGSGGAIAIGGGKVEVSGNGEV 142 >gi|87306343|ref|ZP_01088490.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] gi|87290522|gb|EAQ82409.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] Length = 266 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 5/175 (2%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + + +I N + + + + S + + Sbjct: 94 LDWTIRGKGFFQVLDPTGQTYYTRAGNFSINANGEIVTGSAGVGRPLEPSITIPQDTTGI 153 Query: 369 AGYPDLINHYC---DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 D I + +A LL+ N E N S + + + Sbjct: 154 EVSSDGIVSVQRPGQQTLEEVGQIQLANFINPEGLLKLGDNLYS--ETNASSAAIVGNPN 211 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F + + + V +EL LI ++++ ++++ + D++LQ + + Sbjct: 212 IDGFGSVEKGFLEASNVEPVQELVDLITTQRAFELNSQTVQAGDQILQLVSNLRR 266 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/134 (6%), Positives = 26/134 (19%), Gaps = 28/134 (20%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 MS+ A + I N+ N + + + Sbjct: 1 MSV-QTLYTAATGMQTLQTKLDVISNNLANVNTTAFKKDRINFEDLFYDNRVLPGKLDGS 59 Query: 46 ---SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 +P + +S + ++ + F + + + Sbjct: 60 SNPTPTGTHIGMGVRVQSTQTDYQQGAFRETDRSLDWTIRGKGFFQVLD------PTGQT 113 Query: 100 PTHYISKLRDSLES 113 + Sbjct: 114 YYTRAGNFSINANG 127 >gi|224534494|ref|ZP_03675070.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] gi|224514171|gb|EEF84489.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] Length = 282 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETEALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/211 (5%), Positives = 35/211 (16%), Gaps = 40/211 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + ++ + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L + + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTIFEQGPLKTTGNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + E + + + T ++ A Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKNGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFA 170 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 L + + + + I Sbjct: 171 SNPKRLVSEHENSWENYELLDTIRIVNFENP 201 >gi|224534284|ref|ZP_03674862.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S] gi|224514386|gb|EEF84702.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S] Length = 152 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|312962294|ref|ZP_07776785.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] gi|311283221|gb|EFQ61811.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] Length = 207 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 14/165 (8%), Positives = 29/165 (17%), Gaps = 33/165 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A+ + +I N+ N + R Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 V +V + L + + F + + Sbjct: 61 ELPSGLQLGTGVQIVGTQKN---FSAGNLQQTGQPLDMAINGRGFFQILQ------PDGT 111 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + L VI A+ Sbjct: 112 TSYTRDGTFHLDSNGQIVTANGFSLEPAVIVPADAKTFTVGNDGT 156 >gi|322435952|ref|YP_004218164.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321163679|gb|ADW69384.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/217 (8%), Positives = 49/217 (22%), Gaps = 3/217 (1%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + G + + + + + + G F Sbjct: 48 NMITPGSPATQSTVSAGLQIGLGTRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQP 107 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + S + + NV + Sbjct: 108 DGTIAYTRNGSFHLNNQGTIITTEGMSLIPSITIPSNATNVTISPYGVVSATLPGQTAAA 167 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYSNTVGVN 443 +A L + S + + + Y V+ Sbjct: 168 QLGTLQLANFANPGGLNSAGNSLFTQ--TTSSGNPVTDTPGGTSGVGTLEQGYLENSNVD 225 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + E +I +++Y ++K++ D M Q + ++ Sbjct: 226 VVTEFVQMILAQRAYESNSKVVHVADDMYQQINGMIR 262 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 10/211 (4%), Positives = 35/211 (16%), Gaps = 4/211 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + +I N+ N+ + R + ++ Sbjct: 1 MIRALYTAASGMSAQQANLDTIANNLANSATAGFRSRRVQFEDMIYQNMITPGSPATQST 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L R + + + Sbjct: 61 VSAGLQIGLG----TRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQPDGTIAYTRN 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + + + I + Sbjct: 117 GSFHLNNQGTIITTEGMSLIPSITIPSNATNVTISPYGVVSATLPGQTAAAQLGTLQLAN 176 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + + Q S ++ Sbjct: 177 FANPGGLNSAGNSLFTQTTSSGNPVTDTPGG 207 >gi|216264021|ref|ZP_03436015.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1] gi|215980065|gb|EEC20887.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1] Length = 152 Score = 61.2 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|319648038|ref|ZP_08002255.1| FlhP protein [Bacillus sp. BT1B_CT2] gi|317389673|gb|EFV70483.1| FlhP protein [Bacillus sp. BT1B_CT2] Length = 271 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 51/198 (25%), Gaps = 9/198 (4%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP- 342 + ++ L + G N + Sbjct: 82 GSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQMQLVTKEGHAVL 141 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 N K ++ + P A L Sbjct: 142 DENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEAPLRFNLGIVRAVKPQALTEEGSNLFS 201 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 + N + + + + + + + V++ +E++ LI ++SY +++ Sbjct: 202 VSDELRATALINLNGAGRQDI-------SLKQGFLESSNVDVSKEMTDLISSQRSYQMNS 254 Query: 463 KLIMFTDKMLQTLLEGVK 480 + I D+M+ L+ V+ Sbjct: 255 RAITMGDQMMG-LINSVR 271 Score = 38.5 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46 +Q +I N+ N D Y ++T + Sbjct: 12 QKQIDNISHNLANTDTTGYKAKNTSFSEL 40 >gi|58039490|ref|YP_191454.1| flagellar hook protein FlgE [Gluconobacter oxydans 621H] gi|58001904|gb|AAW60798.1| Flagellar hook protein FlgE [Gluconobacter oxydans 621H] Length = 411 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 42/383 (10%), Positives = 114/383 (29%), Gaps = 2/383 (0%) Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 NS T S E Y N G+++ D+ + + V I Sbjct: 31 NSQTTGYKASTTSFEDYVTNNELANDGESLSDSVAATTRQHTDNQCMVTTSTNSTALAIS 90 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + + + + DF ++ L S V + Sbjct: 91 GNGFFNVVQATGQSNDSTPVLGTQQYYTRNGDFSQDKNGYLVNTSGYYLEGYNVDATSGT 150 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 + + + T+ + T T +S+ + ++ + + + Sbjct: 151 LGTSLSAIQVPSTIAFRPTESTKLTATGTLDSSSSKTVDMSTTAYDSTGAASTVDLSWTK 210 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + D+ + + + + + N T Sbjct: 211 LSDTTWAVKDVNDTTGTSNSATVTFDSSGAVSSVTSQDSTGASSTSSSSFNYTGSPQDMT 270 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + ++ + + + ++ ++ ++ + + +++ P+ Sbjct: 271 VSLSGVTLGSANTVSMTSDSVTTGTFSGISMETDGSVMATFDNGYSQLVAKIPLTTFADP 330 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 +L A+N + ++S S ++ + ++ +L +LS LI +Q+ Sbjct: 331 NSLS--AQNGQAYTATSQSGSPQINAVNTNGAGTLTTGSIEESTTDLTGDLSKLIVAQQA 388 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y + K++ D++LQT L ++ Sbjct: 389 YGANTKVVSTADQLLQTTLAMIQ 411 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 42/416 (10%), Positives = 103/416 (24%), Gaps = 26/416 (6%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTVV 53 S++ + A + N S F + NI N+ Y T N Sbjct: 3 SIINAVHTAVSGLNAQSHAFTDLSNNIANSQTTGYKASTTSFEDYVTNNELANDGESLSD 62 Query: 54 TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-----THYISK 106 + + + D + +++ F + + + Sbjct: 63 SVAATTRQHTDNQCMVTTSTNSTALAISGNGFFNVVQATGQSNDSTPVLGTQQYYTRNGD 122 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 Y N S L +D T + I+ + S Sbjct: 123 FSQDKNGYLVNTSGYYLEGYNVDATSG------TLGTSLSAIQVPSTIAFRPTESTKLTA 176 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 L + + + +D+ D+ K+S+ +T + + TS+ T Sbjct: 177 TGTLDSSSSKTVDMSTTAYDSTGAASTVDLSWTKLSD----TTWAVKDVNDTTGTSNSAT 232 Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + ++ T S ++ + + ++ + + + + + Sbjct: 233 VTFDSSGAVSSVTSQDSTGASSTSSSSFNYTGSPQDMTVSLSGVTLGSANTVSMTSDSVT 292 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 ++ GS + + + + + Sbjct: 293 TGTFSGISMETDGSVMATFDNGYSQLVAKIPLTTFADPNSLSAQNGQAYTATSQSGSPQI 352 Query: 347 NPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401 N G+++ + +L G + ++ N A TL Sbjct: 353 NAVNTNGAGTLTTGSIEESTTDLTGDLSKLIVAQQAYGANTKVVSTADQLLQTTLA 408 >gi|291528558|emb|CBK94144.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 272 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 69/252 (27%), Gaps = 6/252 (2%) Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + + S K + V + + Sbjct: 23 ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ V G + + NP Sbjct: 83 GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---PVAGINTNVTLLEYARNSIG 409 +G ++ + + ++ D Y + + V N L + + + + Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202 Query: 410 WLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 S + L + + N + Y V + +E+ LI +++Y +++K I Sbjct: 203 --ATANSGNPMLEAANPALKNSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTA 260 Query: 469 DKMLQTLLEGVK 480 D ML+T + Sbjct: 261 DSMLETANNLRR 272 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49 ++ A +I N+ N + + + T + S Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + L++ F A++ + + N Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + L DS + + + +I+ +AE++ + + + + Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + + S + + + Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANP 217 >gi|209884526|ref|YP_002288383.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] gi|209872722|gb|ACI92518.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] Length = 262 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 4/177 (2%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 P+ G+ I+ D+ + + Q R + Sbjct: 88 PVGGDLNIAVRGEGYFKIQLPDSTYAYTRDGSFTTDGQGRIVNAQGNFLQPTIAVPQNAS 147 Query: 366 KNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 + ++ + L N S + Sbjct: 148 QLTINAQGQVSVMLPGSTTPSVIGQIGLTRFINKAGLQSIGDNLFTD--TPASGPPQDGI 205 Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + F I + V + E+S LI +++Y ++ K++ D+M+Q+ ++ Sbjct: 206 ANTDGFGDIQQGNLEQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMMQSTTGMLR 262 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 8/41 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A I NI N Y ++ Sbjct: 3 ALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDL 43 >gi|111115118|ref|YP_709736.1| flagellar basal body rod protein FlgC [Borrelia afzelii PKo] gi|110890392|gb|ABH01560.1| flagellar basal-body rod protein [Borrelia afzelii PKo] Length = 152 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + N A + I NI N Y R+ + Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|147678426|ref|YP_001212641.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] gi|146274523|dbj|BAF60272.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] Length = 147 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 9/68 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTISPENVT 51 M L F + + + I NI N + Y RR + + V Sbjct: 1 MGLFDSFAISASGLTAERLRLDLISNNIANMNTAGRPDDPAVPAYRRRFPVFAQVLQEVR 60 Query: 52 VVTQRSEN 59 Sbjct: 61 SAGTARPR 68 >gi|283782100|ref|YP_003372855.1| flagellar basal body FlaE domain-containing protein [Pirellula staleyi DSM 6068] gi|283440553|gb|ADB18995.1| flagellar basal body FlaE domain protein [Pirellula staleyi DSM 6068] Length = 815 Score = 60.8 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 33/439 (7%), Positives = 94/439 (21%), Gaps = 34/439 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45 M L + A A Q + N+ N+ + D++ Sbjct: 1 MGLASALTTALTGMTAAETQIDVVGNNLANSQTVGFKASDSVFATQFLQTQSLGSGPTSG 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 + V + + S+ + F +++ Sbjct: 61 SGGTNPRQTGLGTRVAEIT---PDFTQGTIEVSSNPSDLAIQGEGFFIVQD------SQG 111 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + + ++ + + +D E+ + + A + Sbjct: 112 EQVYTRNGQFKTNSDNELVTTTGQRVLGFGVDQDFEIQTTELVPLEI--PLGSAAVAQAT 169 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + V + A ++A+ DA D ++ I + + Sbjct: 170 QNVYLQGVLSPSGDVADTAAVIQSATLGDALIPRPDVDASTAAVAAIPSSAGTTSTHTQG 229 Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277 T ++ ++ S + + + +++ + Q Sbjct: 230 AGGTHAEGAVYRYRITYVDDSGTESLASSEILVSVPAGDTLANNSITLNNLPAATGSYSQ 289 Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337 + + + G D S +G + E Sbjct: 290 VNIYRTASGGSDFFLLDTAAAGGSYVDDNSVALSATELDNSTINGNYSYVVTYYRAGEEE 349 Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 + + + Y + + + + + Sbjct: 350 SRPSLILGPQNVVNGRVQLTDLPLPPSGPGIPAYDTVRIYRNLAGDSTSFYLVGEVAPGE 409 Query: 398 VTLLEYARNSIGWLEKNRS 416 A I L + Sbjct: 410 EFTDNRADAEISDLSILTN 428 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 18/191 (9%), Positives = 44/191 (23%), Gaps = 2/191 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 LD + D + + + + V+ S Sbjct: 627 LDGADISVGTGLVTFDGQGNLVSVTNDRVSVERRNIPSSDPLEFRIDFSQVSGLSTETSS 686 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S + + + + +++ +A L + +N Sbjct: 687 LAASRQDGSSAGTLTSYIIGEDGVIRGVFSNGVSRDLGQVRLARFANPAGLEQRGQNLFA 746 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S I ++ + L L+ Y + ++I Sbjct: 747 Q--GVNSGLPVEGNPGNDGMGSIISGAVELSNTDIGKNLIDLVLATTQYRGNARVITAAQ 804 Query: 470 KMLQTLLEGVK 480 ++L LL + Sbjct: 805 ELLDELLNLRR 815 >gi|167038784|ref|YP_001661769.1| hypothetical protein Teth514_0111 [Thermoanaerobacter sp. X514] gi|300913631|ref|ZP_07130948.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307723354|ref|YP_003903105.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166853024|gb|ABY91433.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300890316|gb|EFK85461.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307580415|gb|ADN53814.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 266 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + + P G + +++ + D Sbjct: 111 YYTRDGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + LL N + S + + + + T + Sbjct: 171 TQEVATLGIYNFVNTQGLLSVGSNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNI 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y I++K I D+ML + Sbjct: 229 QIVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49 ++ A + I N+ N + + R + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 50 ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V R + K+ + L + + + F A+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDGKVYYTR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + L + D+ +V + V + + K + + Sbjct: 115 DGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 V + ++ ++ + Q + + +++ + Sbjct: 175 ATLGIYNFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEM 234 Query: 224 GTTLFETVPRDINFEKMNSYT 244 + +IN + + + Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255 >gi|110677659|ref|YP_680666.1| flagellar basal body rod protein FlgC [Roseobacter denitrificans OCh 114] gi|163733139|ref|ZP_02140583.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och 149] gi|109453775|gb|ABG29980.1| flagellar basal-body rod protein FlgC [Roseobacter denitrificans OCh 114] gi|161393674|gb|EDQ17999.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och 149] Length = 129 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + + + NI NAD Y R+ + V T + Sbjct: 1 MSEFSKSLDVTTSGLKAQATRLRHLSENISNADTPGYRRKLVSFETAFGGQGVSTVETSR 60 Query: 60 KNMFDKVL 67 + L Sbjct: 61 VRLDQSTL 68 >gi|115523556|ref|YP_780467.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517503|gb|ABJ05487.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 44/185 (23%), Gaps = 4/185 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + I+ D + + R S Sbjct: 80 IMTQGTLSTTGNDLDMAIRGEGFFKIQMPDGTYTYTRDGSFTTDNTGRIVTSNGNPLQPT 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + + L N E Sbjct: 140 ITIPQGSSGLTINAQGQVTVIAQGSTTATLLGQIGLTRFINKTGLQPIGDNLFT--ETPA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + + I + V E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 198 SGPPQDGTANADGYGDIQQQTLEQANVEAVTEISDLISAQRAYEMNAKVVSAADQMLQST 257 Query: 476 LEGVK 480 + Sbjct: 258 SNMFR 262 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 14/181 (7%), Positives = 29/181 (16%), Gaps = 34/181 (18%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI N + ++ Sbjct: 3 ALYTAATGMMAQELNVQVISNNIANMRTTAFKKQRAAFQDLIYDHVKRVGAQASDQGTIL 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGVDIGGGVKTVGTPRI---MTQGTLSTTGNDLDMAIRGEGFFKIQ------MPDGTYT 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L T+ N + + + +I Sbjct: 114 YTRDGSFTTDNTGRIVTSNGNPLQPTITIPQGSSGLTINAQGQVTVIAQGSTTATLLGQI 173 Query: 161 S 161 Sbjct: 174 G 174 >gi|291523980|emb|CBK89567.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 272 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 64/250 (25%), Gaps = 2/250 (0%) Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + + S K + V + + Sbjct: 23 ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ V G + + NP Sbjct: 83 GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 +G ++ + + ++ D Y + + + + S L Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202 Query: 413 KNRSDSHDLHMKSQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + + + Y V + +E+ LI +++Y +++K I D Sbjct: 203 ATANSGNPMLEAANPALKSSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTADS 262 Query: 471 MLQTLLEGVK 480 ML+T + Sbjct: 263 MLETANNLRR 272 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49 ++ A +I N+ N + + + T + S Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + L++ F A++ + + N Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + L DS + + + +I+ +AE++ + + + + Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + + S + + + Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANP 217 >gi|114570497|ref|YP_757177.1| flagellar basal body rod protein FlgG [Maricaulis maris MCS10] gi|114340959|gb|ABI66239.1| flagellar basal-body rod protein FlgG [Maricaulis maris MCS10] Length = 261 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 4/177 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + ++ D + V+ S Sbjct: 80 ITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNFAVSGDGELVTSEGYTVAPG 139 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + D + +A L N +LE Sbjct: 140 IAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIELATFFNQAGLEAIGGNL--FLETAA 197 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S S L F I + + T VN E++ LI+ +++Y ++ ++I +D+M+ Sbjct: 198 SGSASLGTPGSPGFGDIQQGFVETSNVNSVSEITALIQAQRAYEMNARVITASDEMM 254 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 29/172 (16%), Gaps = 16/172 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50 A I N+ N + + R+ + + V Sbjct: 3 ALTTAATGMQAQQLNVEVISNNLANMNTTGFKRQRAEFQDLLYQNVQQMGAASSDAGTIV 62 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109 Q A+ E + Sbjct: 63 PTGVQVGLGVQTASIYRITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNFAV 122 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 S + + + N + +I D + +I Sbjct: 123 SGDGELVTSEGYTVAPGIAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIE 174 >gi|89068731|ref|ZP_01156117.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] gi|89045694|gb|EAR51756.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] Length = 261 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L N +L+ S + + I + + VN+ Sbjct: 169 ELGQLTLTTFMNDSGLRPVGNNL--FLQSEASGEPVPAVPGEPGIGIIRQGHLEGSNVNI 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++++ LI +++Y +++K I D+M+ T V+ Sbjct: 227 IQQITDLIAAQRAYEMNSKAIETADQMMNTA-NQVR 261 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 28/134 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI NA+ + Sbjct: 3 ALGIATTGMLAQQTNVDVISNNIANANTTGFKSSRAAFQDLIYQNVAREGALTAEDGTVR 62 Query: 47 PENVTVV-TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + ++ + L A + + + A+ + + Sbjct: 63 PTGVDIGLGVQTVGTVRLNTQGGLIATGNDLDLAIDGPGYFAV------NLPDGSQGYTR 116 Query: 104 ISKLRDSLESYSKN 117 R + E N Sbjct: 117 DGGFRVNAEGQLVN 130 >gi|46202499|ref|ZP_00053126.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 354 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 5/330 (1%) Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 D + N R + V+ ++ AS V + I +T Sbjct: 21 TDGFGTTQTLTMNWTRTGGDTWQVDFSLPANPASGSVGTITGSPVTVTMDANGAITAPTT 80 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + IN T + D S N G + Sbjct: 81 SASGTGFADLTVDWSAGPTAQSTASINLSSNKPTLSTVDETIAVYDNAYNSHNLGLSFEH 140 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 V S P N Sbjct: 141 ASNGQWYLRMKPVAAEGTVTALMADGTNYTSSIPITFDGAGKILTPAKASFTVGWTAANA 200 Query: 330 LCQGISETICVNPQYRSNPSFL----RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 IS + Q+ + S + + ++ H+ + ++ Sbjct: 201 GSSTISLDLAKLTQFSGDTSTKMSVKNIDQDGYASGTMDQVEIDTAGKVVAHFDNGKSRT 260 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 PVA + L + ++ + D + +Q I S V L+ Sbjct: 261 IFQIPVATFVSADQL-DPISGTVFRATEQAGDITIAAISAQGSGASIVASSLEASNVALE 319 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ S +I +++Y+ + + D+M QT+ Sbjct: 320 DQFSKMIVTQKAYSTNANVFKTADEMTQTV 349 >gi|260222467|emb|CBA32060.1| hypothetical protein Csp_D30230 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 188 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 29/142 (20%), Gaps = 17/142 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVT 54 F + N++S+ I NI NA+ T + V+ Sbjct: 2 SFQTGLSGLNSSSKNLDVIGNNIANANTVGMKASRTEFAALIATQLGPAGGNLTPGIGVS 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + + + F + + + + Sbjct: 62 VGTVAQQFTQGNISITGNNLDVAINGNGFFQV------TMPDQSRAYTRDGQFKLDDVGN 115 Query: 115 SKNLSEDILGKTVIDNAEEVVQ 136 + D Sbjct: 116 LITNGGANVMGYPTDLLGNRTS 137 >gi|322421663|ref|YP_004200886.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] gi|320128050|gb|ADW15610.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] Length = 238 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 40/187 (21%), Gaps = 6/187 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56 + A A +A ++ I N+ NA + +V V + Sbjct: 1 MNAGMYAALTGNLSAQRRLDVISNNLANASTTGFKADQIQFESILASVKNSTEGPVFSND 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + L +A+ F + + + + Y Sbjct: 61 RYSTDFSSGGLQRTDNALDVALEGDGFFVVNTPQGTAYTRQGNFHRGPGGKLVTADGYEV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + E + V A D + L A Sbjct: 121 QGGGGTVTLNGGSKIEIGSNGQVSVDGNVVGNIAVVDFPKPYALEKAGNGLYLPANPQTA 180 Query: 177 IKFKTAS 183 TA Sbjct: 181 TTASTAG 187 >gi|78221651|ref|YP_383398.1| hypothetical protein Gmet_0430 [Geobacter metallireducens GS-15] gi|78192906|gb|ABB30673.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 242 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 29/144 (20%), Gaps = 18/144 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53 + + A A ++ + N+ N + + + P T Sbjct: 1 MNSGIYSALTGNVAAMKRLDVLSNNLANVNTPGFKKDRMTFESMLQTVGAQPRPGGGTDA 60 Query: 54 TQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 +E D + + F A+ R Sbjct: 61 PVFAETTFFTDYSPGSVKQTGNPFDLAIDGDGFFAV------TTADGQRAYTRQGNFRLD 114 Query: 111 LESYSKNLSEDILGKTVIDNAEEV 134 + V+ +V Sbjct: 115 STGRLVTADGAQVAGGVVIAGGKV 138 Score = 41.2 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + V + + VN +E+ LI+ + + + +K++ D + Sbjct: 178 ADPQATPNPVTGEKVMQGAIEESNVNTVQEMVQLIETNRYFEMCSKVVKAYDDL 231 >gi|254699461|ref|ZP_05161289.1| flagellar basal body rod protein FlgG [Brucella suis bv. 5 str. 513] gi|261749912|ref|ZP_05993621.1| predicted protein [Brucella suis bv. 5 str. 513] gi|261739665|gb|EEY27591.1| predicted protein [Brucella suis bv. 5 str. 513] Length = 77 Score = 60.8 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 10/41 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A N I NI N + + R T Sbjct: 3 ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDL 43 >gi|169831913|ref|YP_001717895.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis audaxviator MP104C] gi|169638757|gb|ACA60263.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis audaxviator MP104C] Length = 139 Score = 60.4 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 16/71 (22%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI--------- 45 MSL F + + + I NI NA + Y R + Sbjct: 1 MSLFKSFGISGSGMTAERLRLDLISNNIANAHTTRTREGGPYRREVPVFAQYLERFRGRG 60 Query: 46 -SPENVTVVTQ 55 + V V Sbjct: 61 FAGAGVRVTAV 71 >gi|114765244|ref|ZP_01444376.1| Flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601] gi|114542379|gb|EAU45407.1| Flagellar basal body rod protein [Roseovarius sp. HTCC2601] Length = 261 Score = 60.4 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 2/164 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + D D + S + Q ++ F D G V V+ Sbjct: 93 LDLAIDGRGYFTVNLPDGDQAYTRDGSFRLSAEGQIVNHQGFEIDPGVVLPDNTTAVEIS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 D + + + N + S + Sbjct: 153 ETGIVSAYVEGDPIPVEVGQLTLTTFVNDAGMRPLGNNLLE--ATVASGDAIPALPGDAG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + Y V++ +++ LI+ +++Y +++K I D+M+ Sbjct: 211 VGILRQGYLEASNVDIIRQITDLIQAQRAYEMNSKAIETADQMM 254 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 24/137 (17%), Gaps = 34/137 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI NA+ + T Sbjct: 3 ALGIAATGMMAQQTNVDVISNNIANANTTGFKSARASFTDLIYENQSREGAVTAEEGTTR 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V N L S + + + + + + Sbjct: 63 PIGLDIGLGVRSVGTLRLN---TQGGLTQTESQLDLAIDGRGYFTV------NLPDGDQA 113 Query: 101 THYISKLRDSLESYSKN 117 R S E N Sbjct: 114 YTRDGSFRLSAEGQIVN 130 >gi|195952534|ref|YP_002120824.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] gi|195932146|gb|ACG56846.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] Length = 263 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 25/263 (9%), Positives = 67/263 (25%), Gaps = 6/263 (2%) Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 ++ + T+ + N + +++ ++ V V ++ Sbjct: 1 MFRAMWTSAAGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDLIYQTVKDPGMETSQNS 60 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 ++ + I + + + D + + + Sbjct: 61 QNPIGYQLGLGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIAYTRNGQL 120 Query: 339 CVNPQYR---SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ++ ++ ++ +V G + + +A Sbjct: 121 QLDANGDLVTADGYLIQPQITVPPNATSVNIGPDGTVAVTIPGQQGV-QTVGQLQMANFV 179 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L N S + + + Y+ VN+ E+ LI E Sbjct: 180 NPAGLKRIGNNLFEQ--TQASGNPIVSNPGTQGLGTLLSGYTEASNVNIVNEMVNLIIAE 237 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +Y ++K I + ML T Sbjct: 238 NAYQFNSKGITAANTMLSTAANL 260 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/270 (5%), Positives = 53/270 (19%), Gaps = 10/270 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + Q I N+ N D Y + + ++ Sbjct: 1 MFRAMWTSAAGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDL-------IYQTVKDPG 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + ++ + Q L + + + + ++ + + Sbjct: 54 METSQNSQNPIGYQLGLGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIA 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +Q + I + +T Sbjct: 114 YTRNGQLQLDANGDLVTADGYLIQPQITVPPNATSVNIGPDGTVAV---TIPGQQGVQTV 170 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + +F++ + + GT L Sbjct: 171 GQLQMANFVNPAGLKRIGNNLFEQTQASGNPIVSNPGTQGLGTLLSGYTEASNVNIVNEM 230 Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + N + +++ + Sbjct: 231 VNLIIAENAYQFNSKGITAANTMLSTAANL 260 >gi|266621929|ref|ZP_06114864.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM 13479] gi|288866402|gb|EFC98700.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM 13479] Length = 87 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 30/78 (38%) Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 E+ L ++ + S + + GV+L EE ++ ++Y+ Sbjct: 5 EFITGYTNTLGTDKKTNDSRLKASLAIAESVESDRMGVSGVSLNEEGINMMTYNKAYSAL 64 Query: 462 NKLIMFTDKMLQTLLEGV 479 +L+ D+ L ++ + Sbjct: 65 GRLMTTMDEQLDMIINQM 82 >gi|168705106|ref|ZP_02737383.1| flagellar basal-body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 261 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 55/252 (21%), Gaps = 2/252 (0%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + ++ S++ + A S I Sbjct: 12 GIRAASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVTPPSGTQIGSG 71 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + + + G I + + N P Sbjct: 72 VVVDAITGKFTQGAALESTGRFDLAIQGEGFFQVILPDGSTGYTRAGNFVTDNTGQLVTP 131 Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 R + + +A + + + + L N Sbjct: 132 QGYRLVSDLIVPANTSSITVAPDGTVTAALDNGTAQVIGQVTLTRFVNPGGLSRSGDNVY 191 Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 + + + V L EL LI +Q++ + + + Sbjct: 192 T--ATPAAGDAINGAPNTNGIGSVESGRLEQSNVELANELVNLIVAQQAFRFNTQALQLE 249 Query: 469 DKMLQTLLEGVK 480 ++LQ + ++ Sbjct: 250 SQVLQVTTDLIR 261 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 41/220 (18%), Gaps = 26/220 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 L + + + AS NI N+D Y Sbjct: 2 LASAITSSASGIRAASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVT 61 Query: 45 --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + V + + + F + ++ Sbjct: 62 PPSGTQIGSGVVVDAITGKFTQGAALESTGRFDLAIQGEGFFQVI------LPDGSTGYT 115 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 L +I A + + I Sbjct: 116 RAGNFVTDNTGQLVTPQGYRLVSDLIVPANTSSITVAPDGTVTAALDNGTAQVIGQVTLT 175 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 L+ D + T + DA + + + S Sbjct: 176 RFVNPGGLSRSGDNVYTATPAAGDAINGAPNTNGIGSVES 215 >gi|289666055|ref|ZP_06487636.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 385 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 27/369 (7%), Positives = 93/369 (25%), Gaps = 5/369 (1%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + T + + + + + ++ + ++ +A Sbjct: 5 LVVATTASKLTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQA 64 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGIST 209 + + S S+ + A+ + + + +S +S Sbjct: 65 ELGRLAVGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTTAANPNNTGSASLSASFSNMSA 124 Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + N + ++ + + + + N + + ++ + + Sbjct: 125 VDGQNVTLSFDGTNWKATNASTGSAVPMTGTGTASNPLVLNGVSMVVGGTPASGDKFLLQ 184 Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKD 325 + ++ + + ++ + + P L ++ Sbjct: 185 PTAGLAGSLSVAITDPSRIAAATPVKATATIANQGSGKISDVKVTNAQNPALLTPSSVEF 244 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 +D ++ + + + + ++ Sbjct: 245 IDANQYTINGAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLA 304 Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 I D A VTL + + +V+ + S + GVNL Sbjct: 305 KIDDAKALSGGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLD 364 Query: 446 EELSFLIKV 454 EE + ++K+ Sbjct: 365 EEAANMLKL 373 >gi|157738166|ref|YP_001490850.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] gi|157700020|gb|ABV68180.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] Length = 583 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 34/462 (7%), Positives = 113/462 (24%), Gaps = 24/462 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE 58 +++ + +N + + NI N+ + + + V+ +S Sbjct: 1 MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLYTNSGYGKGVSTQSI 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 +K +++ + + F + + + + + + + Sbjct: 61 SKQFAQGSINSSGGTLDMAIDGKGFFIVSDKAGEI------YYTRAGDFQQTKDGWLQTQ 114 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + V + N + + + I + ++ T Sbjct: 115 DGMNVLGLVPQSKLISSTNPQDTMFTTEYSKNVVSTNINDGNGTINNINAKTTDYTKTAT 174 Query: 179 FKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236 +S + + + + I++ + V S + + + Sbjct: 175 ADDSSLKGDNYKSAQAKINDVDALITDYLNKLNKYDGTQASVASVSQISKVDFSSKFSNL 234 Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------GKIKALLQIRDSVVPIFQNQL 290 + NS ++ + + + + + +A + D Q Q+ Sbjct: 235 LSEGNSISLNIDGKNFSVAFNNDGTASQQDMQDIYNFLSPEGRATYGLSDPSTIPTQTQV 294 Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 D++ + + + P + +E + Y + + Sbjct: 295 DDLFSAIPDQAVIDAMPTSTPAEIAAKAAAQAQKDQAVTSYQTAYQARVDAQTSYNTAKN 354 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + ++ K A D + A +N ++ ++ Sbjct: 355 AISAYKDLADKISNTAGYSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVT 414 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 + + + V E + L Sbjct: 415 --GSGMAMVDSAKDALKEAVEKAGGKFLEITNV---MEYANL 451 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/458 (11%), Positives = 108/458 (23%), Gaps = 33/458 (7%) Query: 24 IVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF 83 + NI NA +Y + T S + D A + L+ + Sbjct: 158 TINNI-NAKTTDYTKTATADDSSLKG--------------DNYKSAQAKINDVDALITDY 202 Query: 84 EALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 S + + + L + + + S Sbjct: 203 LNKLNKYDGTQASVASVSQISKVDFSSKFSNLLSEGNSISLNIDGKNFSVAFNNDGTASQ 262 Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 +++Q I E + I +T DQ + S Sbjct: 263 QDMQDIYNFLSPEGR---------ATYGLSDPSTIPTQTQVDDLFSAIPDQAVIDAMPTS 313 Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 I+ + T R N+ + D + ++ Sbjct: 314 TPAEIAAKAAAQAQKDQAVTSYQT--AYQARVDAQTSYNTAKNAISAYKDLADKISNTAG 371 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 ++V G + I I +L++ S + + + Sbjct: 372 YSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVTGSGMAMVDSAKDALKEA 431 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 ++ K + + N ++ + + Sbjct: 432 VEKAGGKFLEITNVMEYANLGSYGTSDLNLRLDTLGLVEGDFGEASVSDDGFVFVTSGDN 491 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 A L N S + N I E V Sbjct: 492 KFLVGRVSTAAFRNEQGLEAVGDNKYS--ATKSSGTAYNAD----GMNKIKEKSLERSNV 545 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + L+ L+ +++Y S+K I +D L+T ++ +K Sbjct: 546 SYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAIDMIK 583 >gi|167038474|ref|YP_001666052.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116869|ref|YP_004187028.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857308|gb|ABY95716.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929960|gb|ADV80645.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 251 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 65/252 (25%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 +L A + ++ + N+ N + Y R +T+ Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSPFPNFEVTRHGGDNTPPN 60 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V T + N + + + F + + S Sbjct: 61 GKIGTMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T + E Y + + D + + + N + + V ++R + Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + T + + + ++ IS + ++ V Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234 Query: 221 TSDGTTLFETVP 232 + TL + V Sbjct: 235 IAFDETLGKAVN 246 Score = 41.9 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K+++ D+ L + Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246 >gi|168699693|ref|ZP_02731970.1| flagellar basal body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 2/136 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 S+ + ++ + + G + N + + + L Sbjct: 130 TSDGFLISPQVTIPTQAVSVSVGSDGTISVQNAGALNASTVLGQLTLVRFQNPAGLSAEG 189 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 RN E S + + Q + + V++ EL LI +++Y + + Sbjct: 190 RNLFA--ETASSGTPLIATPGQNGVGFTRQGFLERSNVDVVTELINLILAQRAYEFNTRA 247 Query: 465 IMFTDKMLQTLLEGVK 480 + D ML + + ++ Sbjct: 248 VRTADNMLASTTDLIR 263 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/162 (7%), Positives = 33/162 (20%), Gaps = 27/162 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + N + + NI N + + + Sbjct: 1 MIKALFTSATGMNVQTTAIDNTSNNIANVNTNGFKKGQADFQDLLYVSQRAPGSDAAAGL 60 Query: 46 -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + K L + + F + Sbjct: 61 QVPTGLQIGSGARVAGITKVFTPGALVNTQNPFDVAVEGEGFFQV------TLPSGELRY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 LR + + ++ V + V + + Sbjct: 115 TRDGALRLNAQGNLVTSDGFLISPQVTIPTQAVSVSVGSDGT 156 >gi|167750705|ref|ZP_02422832.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702] gi|167656384|gb|EDS00514.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702] gi|291532044|emb|CBK97629.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3] gi|291558218|emb|CBL35335.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 242 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 21/117 (17%), Gaps = 6/117 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----QRSE 58 + F + + NI N + + V T Q Sbjct: 1 MNIAFYTGKTGLIAQQEGLNVYSNNIANVNTVGFKASRPSFADCIYTVQRNTEPDWQTGH 60 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFE-ALKEMMSADDHYNNSP-THYISKLRDSLES 113 + + L F +E A + S Sbjct: 61 GEYVHSTQLMYSEGVFTYTDNDLDFAIPTEEGFFAVMDKYGDVNYTRAGDFQMSQIG 117 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ ++ +I+ ++SY +S +++ D+ L+ + ++ Sbjct: 198 ALERSNTDIAGDMVRIIETQRSYQMSARVVQTADE-LERITNNLR 241 >gi|15595120|ref|NP_212909.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] gi|2688723|gb|AAC67131.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] Length = 300 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 230 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 287 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 288 SLLGKLIN 295 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/147 (7%), Positives = 25/147 (17%), Gaps = 34/147 (23%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM---------- 42 A + ++ ++ N+ N D Y + R Sbjct: 22 GIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKFPKG 81 Query: 43 -TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 +P + T L + + + + Sbjct: 82 HLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQTSDG 134 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGK 125 E S + Sbjct: 135 ERYTRNGSFTIGKEGILVTKSGFPVLG 161 >gi|289607949|emb|CBI60684.1| unnamed protein product [Sordaria macrospora] Length = 240 Score = 60.4 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/227 (7%), Positives = 48/227 (21%), Gaps = 34/227 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENV 50 + + N S+ + N+ N + + +++ + Sbjct: 1 MFGAIYIGLSGLNAYSKGLQQVSNNVSNLNTTGFKGSTVSFHNLYATPDRGGMSLTGQGG 60 Query: 51 TVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + N L + + F L + + + Sbjct: 61 SAGYGVEVDDGTLNFKQGELRSTDRDLDLSVDGSGFLVLLD-------GDRTLYARTGSF 113 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + + I+ + + V R A K Sbjct: 114 E-------VDPAGFIVMSGTSYRLATLDATGRAVSLSVDARRTSAPKATTAVTFADNLSS 166 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + I+ AS D + S+ ++ Sbjct: 167 TATSYAVSDIRVFDASGAAHVWKADFVNG-----SDGWTVTVTDDKG 208 >gi|225551767|ref|ZP_03772710.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] gi|225371562|gb|EEH00989.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] Length = 282 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 12/211 (5%), Positives = 34/211 (16%), Gaps = 40/211 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + ++ ++ N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEILIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L + + + Sbjct: 61 PKGHLETAPVVGKLGTGVEENEI---YTVFEQGPLKTTGNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 + E S + + T ++ Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFE 170 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 L + + + I Sbjct: 171 SDPKRLVSEYENSWENYELLDTIRIVNFENP 201 >gi|150020363|ref|YP_001305717.1| hypothetical protein Tmel_0465 [Thermosipho melanesiensis BI429] gi|149792884|gb|ABR30332.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 233 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 15/138 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPE--N 49 + A + ++ NI N D Y P+ Sbjct: 1 MYRGIYLASMGMLADITKLDTLSNNISNVDTAGYKSDSLAFKAYFEKQLYSFNPMPQKEE 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSA--IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V S + + + + S + F + ++ Sbjct: 61 VEVKKIGSFEQALILDQVKTNYSQGTLEYTGHSLDFAIDGKGFFVVENAGKRMYTRAGNF 120 Query: 108 RDSLESYSKNLSEDILGK 125 + + E Y + Sbjct: 121 KANEEGYLITPEGYYVLG 138 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + Y VN+ E+ +I+ + Y +K + D++L + Sbjct: 182 ILQGYVEKSNVNIVREMVKMIEATRHYETLSKAVTVHDELLNKSINS 228 >gi|238923133|ref|YP_002936646.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|238874805|gb|ACR74512.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] Length = 272 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/252 (10%), Positives = 70/252 (27%), Gaps = 6/252 (2%) Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 + + + + + + S K + V + + Sbjct: 23 ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ V G + + NP Sbjct: 83 GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---PVAGINTNVTLLEYARNSIG 409 +G ++ + + ++ D Y + + V N L + + + + Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202 Query: 410 WLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 S + L + + + + + Y V + +E+ LI +++Y +++K I Sbjct: 203 --ATANSGNPMLEIANPALKSSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTA 260 Query: 469 DKMLQTLLEGVK 480 D ML+T + Sbjct: 261 DSMLETANNLRR 272 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49 ++ A +I N+ N + + + T + S Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + L++ F A++ + + N Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + L DS + + + +I+ +AE++ + + + + Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + + + S + + + Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEIANP 217 >gi|283780137|ref|YP_003370892.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] gi|283438590|gb|ADB17032.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] Length = 266 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 2/136 (1%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + L D + + A L+ + + +A LL+ Sbjct: 133 SAQTGRLIDPNVSFPQDTMAISITADGRVLVRQFGQQDLQQIAQIQLATFPNPEGLLKLG 192 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + S + + + V +EL LI ++S+ ++++ Sbjct: 193 ENLYSQ--TDASGQEIVDNPGNQGIGVLRQGMLEASNVEPVQELIDLITTQRSFELNSQA 250 Query: 465 IMFTDKMLQTLLEGVK 480 I D++LQ + + Sbjct: 251 IQAGDQILQLISNLRR 266 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/184 (7%), Positives = 38/184 (20%), Gaps = 28/184 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------- 44 MS+ A + + I N+ N + + R Sbjct: 1 MSV-QTLYTAATGMESLQTKLDVIANNLANVNTTGFKRGRANFEDLFYRQEKLPGSQDQQ 59 Query: 45 -----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 S N + Q F +++ + Sbjct: 60 QNLTATGTAIGLGSRVSSVQTNFNQGAFQETGGQLDVAIEGQGFLRVQD------PSGIT 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 L + + S + + + + + + ++ + Sbjct: 114 VYSRAGNLSINAQGQLVMGSAQTGRLIDPNVSFPQDTMAISITADGRVLVRQFGQQDLQQ 173 Query: 160 ISNL 163 I+ + Sbjct: 174 IAQI 177 >gi|149912830|ref|ZP_01901364.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b] gi|149813236|gb|EDM73062.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b] Length = 130 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53 MS + + + + +Q+ + NI NAD Y R+ ++ V Sbjct: 1 MSGFSESLSVSASGLKAQAQRLRHVSENIANADTPGYRRKTVSFEARAAGMSGV 54 >gi|294501850|ref|YP_003565550.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] gi|294351787|gb|ADE72116.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] Length = 273 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 29/276 (10%), Positives = 68/276 (24%), Gaps = 7/276 (2%) Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 I+ G L T + + + D Sbjct: 4 TMITAANTMGQLQQQLDVIGHNLSNTNTPGYKARDASFNDMLYQQVNNQEDKGTEKRLTP 63 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + +G L Q ++ D++ V + + +A N P + DG Sbjct: 64 AGIRQGTGAYLDQTSLNMTQGAFQNTDKLLDVAASNPNVYFQVAVNDSQQPVQYTRDGSF 123 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 L + + + K + + Sbjct: 124 HLSPEGPNDVKLVNGSGQDVLGENGQAIIFNNAFKDIQIDGSGTITVTTNTGVDQFTLGL 183 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + P L + + + V+L Sbjct: 184 TNVQKPQVLEAKGENLFAFPAGMNQPNMFTDLTGKARETAG------VEQGKLEQSNVDL 237 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +EL+ + +++Y +++ I D+M+ L+ G++ Sbjct: 238 SKELTDMSIAQRAYQFNSRSISIADQMMG-LVNGIR 272 Score = 41.6 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 51/200 (25%), Gaps = 20/200 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A N QQ I N+ N + Y RD Sbjct: 1 MNRTMITAANTMGQLQQQLDVIGHNLSNTNTPGYKARDASFNDM---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED- 121 + ++ + + A + S +++ + S Sbjct: 45 ---LYQQVNNQEDKGTEKRLTPAGIRQGTGAYLDQTSLNMTQGAFQNTDKLLDVAASNPN 101 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + ++++++ VQ + + + K + ++ + + N+A K Sbjct: 102 VYFQVAVNDSQQPVQYTRDGSFHLSPEGPNDVKLVNGSGQDVLGENGQAIIFNNAFKDIQ 161 Query: 182 ASKHDAHDFLDQRDVLLQKI 201 V + Sbjct: 162 IDGSGTITVTTNTGVDQFTL 181 >gi|322432975|ref|YP_004210224.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321165202|gb|ADW70906.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 23/251 (9%), Positives = 67/251 (26%), Gaps = 7/251 (2%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + +N + + + S + + S A Q ++ Sbjct: 11 GMTAQQLNLDNIANNLANSSTTGFQQRRLAFSDMLYQNTTSPGSAATQQTTNAAGLQVGL 70 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---ISETICVNPQYR 345 + + I + + + + + + + Sbjct: 71 GVRPTSTETIQTQGDFNSTGNPLDLAISGGGFFQVLLPNGQTGYSRSGSFHMDSTGNVVT 130 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 ++ + L+ ++ G ++ + +A L Sbjct: 131 ADGNPLQPAITIPPDATNITIGSDGTVSVVQPGTT-QSAQIGSIQMALFVNPGGLNSVGN 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQV-VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N +L S + I + V++ +E +I ++SY ++++ Sbjct: 190 NI--YLATTASGDPIIGTPGGSEGLGTIQQGTLEASNVSVVDEFVEMIVAQRSYESNSRV 247 Query: 465 IMFTDKMLQTL 475 + D+M+Q L Sbjct: 248 VKAADEMMQQL 258 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 13/187 (6%), Positives = 41/187 (21%), Gaps = 19/187 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + +I N+ N+ + +R + Sbjct: 1 MIRALYTAASGMTAQQLNLDNIANNLANSSTTGFQQRRLAFSDM---------------- 44 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + +S + A ++ + + +S Sbjct: 45 ---LYQNTTSPGSAATQQTTNAAGLQVGLGVRPTSTETIQTQGDFNSTGNPLDLAISGGG 101 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + ++ N + + + AD + + +T+ +D Sbjct: 102 FFQVLLPNGQTGYSRSGSFHMDSTGNVVTADGNPLQPAITIPPDATNITIGSDGTVSVVQ 161 Query: 183 SKHDAHD 189 Sbjct: 162 PGTTQSA 168 >gi|160878402|ref|YP_001557370.1| hypothetical protein Cphy_0244 [Clostridium phytofermentans ISDg] gi|160427068|gb|ABX40631.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 271 Score = 60.4 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 8/195 (4%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + + +A + + + +DG I+ ++ + Sbjct: 79 SFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNGSFHIAIGAEGVTLASADGYPV 138 Query: 352 RDGGSVSKKFLWN-----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 + F N V + + + I + L + + Sbjct: 139 LNTKGQPVVFNNNWDISKVTMDEYGNLMYPDANNIAQRTGIQIGLTQFVNPAGLEKAGGS 198 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + E S + +++ + I Y V +E+ LI +++Y +++K+I Sbjct: 199 L--FYETESSGAPLKEVENNNLKQSKIHTGYLEASNVQTADEIVNLIVTQRAYEMNSKVI 256 Query: 466 MFTDKMLQTLLEGVK 480 D+MLQ + Sbjct: 257 TAADEMLQQANNLRR 271 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 7/117 (5%), Positives = 27/117 (23%), Gaps = 20/117 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ + + +I N+ N + Y + + + Sbjct: 1 MMRALWTGASGMISQQTSLDTISNNLSNINTAGYKKENAQFSSLLYSKIQSKVTDSEGKV 60 Query: 47 ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + + V + L ++ ++++ + N Sbjct: 61 KPVIGQVGSGVRVTGIVSSFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNG 117 >gi|325473455|gb|EGC76650.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 270 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 16/168 (9%), Positives = 32/168 (19%), Gaps = 40/168 (23%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45 A + +Q I N+ N D ++ R ++ Sbjct: 6 YTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSS 65 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V L SS Q F A++ Sbjct: 66 DIAPIIGKLGLGVETNEI---FTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEK---- 118 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 +E Y + + ++ ++ Sbjct: 119 ---YTRNGNFMVGVEGYLMTKEGYPVMGENGRIFLQDMEYKINQDGQI 163 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + VN+ E+ +I+V ++Y + K I D M+ L Sbjct: 220 VVQGFIEASNVNVVNEMVRMIEVNRAYEANQKSIQAEDTMMAKLWN 265 >gi|42526517|ref|NP_971615.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816710|gb|AAS11496.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] Length = 270 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 16/168 (9%), Positives = 32/168 (19%), Gaps = 40/168 (23%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45 A + +Q I N+ N D ++ R ++ Sbjct: 6 YTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSS 65 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V L SS Q F A++ Sbjct: 66 DIAPIIGKLGLGVETNEI---FTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEK---- 118 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 +E Y + + ++ ++ Sbjct: 119 ---YTRNGNFMIGVEGYLMTKEGYPVMGENGRIFLQDMEYKINQDGQI 163 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + VN+ E+ +I+V ++Y + K I D M+ L Sbjct: 220 VVQGFIEASNVNVVNEMVRMIEVNRAYEANQKSIQAEDTMMAKLWN 265 >gi|170747256|ref|YP_001753516.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170653778|gb|ACB22833.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 2/172 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + D + S + Q + +L D + +V Sbjct: 93 YDVAIRGDGFFRVTLPDGRTAYSRDGSFDLSAQGQLVTRDGYLLDPAITVPQNATSVTIS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 A N + + ++ V L N ++E S + Sbjct: 153 ATGAVQANIPGQTAPQALGQFQLSRFVNKVGLESIGDNL--FVETAASGQAISGLPGADG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F ++ +SY VN E+S LI +++Y +++K++ D+ML T + + Sbjct: 211 FGNLQQSYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTTQMFR 262 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/175 (8%), Positives = 25/175 (14%), Gaps = 34/175 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44 A I NI N Y R+ Sbjct: 3 ALYSAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNMRRAGASTSQQNTQL 62 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + M L + F + + Sbjct: 63 PAGLSLGSGVKTTSTARV---MSQGTLSSTEKDYDVAIRGDGFFRV------TLPDGRTA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 S + +L + + + I + Sbjct: 114 YSRDGSFDLSAQGQLVTRDGYLLDPAITVPQNATSVTISATGAVQANIPGQTAPQ 168 >gi|224532206|ref|ZP_03672838.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] gi|224511671|gb|EEF82077.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] Length = 282 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEMDI--SLRPKIETETLEASNVNPVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 NLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 9/153 (5%), Positives = 24/153 (15%), Gaps = 40/153 (26%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41 ++ A + ++ + N+ N D Y + + Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 42 ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V L + + + Sbjct: 61 PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTGNPLDLALT-------DQGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|189426331|ref|YP_001953508.1| flagellar basal body rod protein [Geobacter lovleyi SZ] gi|189422590|gb|ACD96988.1| flagellar basal body rod protein [Geobacter lovleyi SZ] Length = 258 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 15/165 (9%), Positives = 36/165 (21%), Gaps = 6/165 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59 + + A + A ++ I N+ NA + + V Sbjct: 1 MNSGMYSALSGNLAAMKRLDVISSNLANASTNGFKQDRLAFESVLAGNRNPPAVPPSQTA 60 Query: 60 KNMFDKVLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + G Q + R + + Sbjct: 61 DPVLLQERMLTDYSAGTLVQTGNTLDVALQGDGFFVVRTPEGVAYTRQGNFRLASDGTLI 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + E+ A + R D + + I+ Sbjct: 121 TADGYQVLSKAGERPEDGQPIRIDVAGQDGGGRPVVDSQGGITIN 165 >gi|256751339|ref|ZP_05492218.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] gi|256749721|gb|EEU62746.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] Length = 266 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 2/158 (1%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 D + + P G + +++ + D Sbjct: 111 YYTRDGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGT 170 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + LL N + S + + + + T + Sbjct: 171 TQEVATLGIYNFVNTQGLLSVGSNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNI 228 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + +E+ +I +++Y I++K I D+ML + Sbjct: 229 QIVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 6/236 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 ++ A + I N+ N + + R NV + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + V + LQ + ++ + + S+ Sbjct: 61 PVNMQVGVGVRLSAIVKDFTGGSLQQTDNPLDLALDGEGFFAVLGPDGKVYYTRDGSFKL 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + L D + + N + + + + N E+ + Sbjct: 121 SPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIY 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 T L + + + + TS+ + E V Sbjct: 181 NFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVD 236 >gi|239828562|ref|YP_002951186.1| hypothetical protein GWCH70_3280 [Geobacillus sp. WCH70] gi|239808855|gb|ACS25920.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 283 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 77/246 (31%), Gaps = 9/246 (3%) Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMA 294 + + ++ + +GV A + L D + + + + Sbjct: 44 LLAQQFTNLPNDKATRLTPNGVRYGVGARLAETNLVLAQGALTKTDRALDVALAKEGQFF 103 Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354 RVL+ + I L + + + + N P ++ Sbjct: 104 RVLVQGENGAQEIGYTRSGAFYLTPSAENPNELMLVTSDGHPVLDENNAPILLPEGFKNI 163 Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + V + N + + + V + L + + N Sbjct: 164 TISNNGTITAVASDGRVMRRANIGITTILRPQLLQSVGDNIFTLPDLNALNVNETDVAVN 223 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + + +++ V+L EL+ ++ E+SY ++ + I +D+ML Sbjct: 224 MTGNLRNQI-------SMTQGALEQSNVDLGAELTDMMITERSYQLNARAISLSDQMLG- 275 Query: 475 LLEGVK 480 L+ G++ Sbjct: 276 LINGIR 281 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N QQ I NI N++ + RR+T Sbjct: 1 MLRSMITAANTMAQLGQQLDVISNNIANSNTTGFKRRETNFGEL 44 >gi|302343296|ref|YP_003807825.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639909|gb|ADK85231.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 239 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 2/186 (1%) Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 L A + + D + + + ++ + Q L Sbjct: 55 QTALASGPIVSTGNALDLAIDGAGYFVLQDADGNELYTRAGNFSLNADGQLVDQTGRLVQ 114 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + + D +A L N + Sbjct: 115 AEGFQAPQGTAQIQVGADGVVQALGADDAVLAEGQLQIATFANPGGLRAVGGN--AFQAT 172 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + S + Q + I+ T G ++ E+ I ++S+ + K I D+ML Sbjct: 173 DASGPAVIDAAGQPGYGAIASGALQTSGTDIVSEMVGQITAQRSFEANLKTIRTGDEMLG 232 Query: 474 TLLEGV 479 T+L+ V Sbjct: 233 TILDIV 238 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 11/150 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61 ++ + N A ++ N+ N YV + V VV Q + Sbjct: 2 IIDGIAAGISGMNAAVRRLNQSANNLANISTPGYVPSRVEQADLAGGGVAVVGQTA---- 57 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + + +A+ + L++ N + + + + Sbjct: 58 LASGPIVSTGNALDLAIDGAGYFVLQDA------DGNELYTRAGNFSLNADGQLVDQTGR 111 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 ++ + Q + VQ + AD Sbjct: 112 LVQAEGFQAPQGTAQIQVGADGVVQALGAD 141 >gi|149203129|ref|ZP_01880100.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035] gi|149143675|gb|EDM31711.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035] Length = 130 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + +Q+ + NI NAD Y R+ + + + Sbjct: 1 MSDFSNALSVSASGLKAQAQRLQHVSENIANADTPGYRRKTVSFEATHAGTGTAGAVTVS 60 Query: 60 KNMFDKV 66 + D+ Sbjct: 61 RVHLDQS 67 >gi|255767784|ref|NP_391520.2| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|254763418|sp|P39753|FLHP_BACSU RecName: Full=Flagellar hook-basal body complex protein flhP gi|225185412|emb|CAB15656.2| putative flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] Length = 269 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + N + D + ++KN+ + D Sbjct: 123 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 182 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 V +N L N + + + + + + + V++ E+++ Sbjct: 183 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI ++SY ++++ I D+ML L+ V+ Sbjct: 240 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 269 Score = 40.4 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N QQ +I N+ N++ Y +DT + Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44 >gi|221311596|ref|ZP_03593443.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315923|ref|ZP_03597728.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320836|ref|ZP_03602130.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. JH642] gi|1763701|emb|CAB05941.1| flhP [Bacillus subtilis subsp. subtilis str. 168] Length = 268 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + N + D + ++KN+ + D Sbjct: 122 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 181 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 V +N L N + + + + + + + V++ E+++ Sbjct: 182 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 238 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI ++SY ++++ I D+ML L+ V+ Sbjct: 239 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 268 Score = 40.8 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N QQ +I N+ N++ Y +DT + Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44 >gi|254461663|ref|ZP_05075079.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678252|gb|EDZ42739.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 262 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F I D + S + + ++ + V Sbjct: 92 NSFDLAIDGQGFFQVLIPDGRVGYTRNGSFSRSAEGALTTASGYVVQPEIRIPDDVVEVN 151 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + +A L + + ++ S + Sbjct: 152 VSQDGIVSVRSAAQKEPQEVGQLTLASFANPRGLQPVGESFL--VQTAASGDPTVASPQA 209 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + VN+ ++L +I+ +++Y +S+K I +D+M+ Sbjct: 210 QGIGKLVQGSLESSNVNVVQQLVEMIETQRAYEVSSKSITASDEMM 255 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 28/145 (19%), Gaps = 28/145 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51 MS + A+ N + I N+ N + + V Sbjct: 1 MS-SNAMHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVKRGGGDQTSE 59 Query: 52 ----------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 R+ N + ++ Q F + Sbjct: 60 GTELTSALALGTGVRAVNTQKLYSQGGMVNTDNSFDLAIDGQGFFQVL------IPDGRV 113 Query: 100 PTHYISKLRDSLESYSKNLSEDILG 124 S E S ++ Sbjct: 114 GYTRNGSFSRSAEGALTTASGYVVQ 138 >gi|109947808|ref|YP_665036.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109715029|emb|CAK00037.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 605 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 63/246 (25%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N ++QK+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIQKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K L+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVDISVNLNPKDHLKGAQEFLLNDKGEIIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 15/232 (6%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 S++ S+ + +++ +V + I D ++ P Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKTPINEPIWEIIGFDSATHKMKSAPMT 436 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 G + SE + + L + + ++ + + Sbjct: 437 LDFKGNRL---TYSLNKSENHDSSDLIYQDSKLLEVSQNGKPRGIFRDMRIEENGVISLA 493 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428 + + + + + L + N E + + + ++ Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 553 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I Y T VN L+ LI +++ Y+++ K D M++ + K Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKEAISLKK 605 >gi|197120124|ref|YP_002140551.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] gi|197089484|gb|ACH40755.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] Length = 238 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + +A ++ I N+ N++ + NV TQ++ Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTSGFKADQIQFESVLANVKNPTQQAPV--F 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S QR + + + + S N Sbjct: 59 SNDRYSTDYSPGAMQRTENALDVALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADG 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + A + EV A +++ + + + Sbjct: 119 FEVQGSGGSIAIGGGKVEIAGNGEVVVNGATVGTLSKVDFPKPYQLTKIGGGLFVPANPQ 178 Query: 181 TASKHDAHDF 190 A Sbjct: 179 AAPAPTQASV 188 >gi|299131785|ref|ZP_07024980.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] gi|298591922|gb|EFI52122.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] Length = 262 Score = 60.0 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 47/163 (28%), Gaps = 2/163 (1%) Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 + + D + S T + + L + + A + Sbjct: 102 YFKIQLPDSTYAYTRDGSFTTDGQGRIVNAQGNLVQPTISIPQNASQLTINAQGQVSVIL 161 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 + + L N S + + F I + Sbjct: 162 PGSTTPSVLGQITLTRFINKAGLQSIGDNLFTD--TPASGPPQDGLANADGFGDIQQGNL 219 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V + E+S LI +++Y ++ K++ D+M+Q+ ++ Sbjct: 220 EQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMMQSTTGMLR 262 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 8/41 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A I NI N Y ++ Sbjct: 3 ALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDL 43 >gi|158321570|ref|YP_001514077.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] gi|158141769|gb|ABW20081.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] Length = 357 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 35/138 (25%), Gaps = 4/138 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + + N+ N + + + + PE V + N + Sbjct: 1 MFRGLYTAVSSMQTNQRMLDITSNNMANVNTTGFKKDVLVAETFPE----VLIKKINGEI 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + + + + + + K + Y + Sbjct: 57 PNQTIKLNGNLDIDRDGEGYILSTERGFFTVEGPMGKSYSRDLKFTVDEDGYLRTYGRTS 116 Query: 123 LGKTVIDNAEEVVQNFNT 140 G+ V+ T Sbjct: 117 GGEIDWTEGNFVLSGQGT 134 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/356 (10%), Positives = 92/356 (25%), Gaps = 12/356 (3%) Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + A +Q A+ + + + E+ + + + Sbjct: 4 GLYTAVSSMQTNQRMLDITSNNMANVNTTGFKKDVLVAETFPEVLIKKINGEIPNQTIKL 63 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + RD +S G T+ T + R T Sbjct: 64 NGNLDIDRDGEGYILSTERGFFTVEGPMGKSYSRDLKFTVDEDGYLRTYGRTSGGEIDWT 123 Query: 247 SESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 + + G + + + G+I A D + Q+ + + + Sbjct: 124 EGNFVLSGQGTRIRVDNNNVQIDQRGRITAGGGAMDLIHRPAQDVIGTINGGKRFERTHV 183 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + G E ++ N + P+ N Sbjct: 184 NFLQGTLEETGSPLNFAIDGTGFFRVQTPEGPMYTRNGSFSLGPNGNLVTAEGYLLLGQN 243 Query: 365 VKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 G + N + + I+ +L ++ ++ R Sbjct: 244 GPINVGNQEFQVKENGQVIVAGQLVNQISMTDISNLNSLDKFGQSYY----IVREGLEVE 299 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + ++ +E+ +I +SY S+K++ D+MLQ + Sbjct: 300 ETPFT---GEVLQGFLEGSNISTIDEMVKMISTMRSYEASSKMVKAYDEMLQKAVN 352 >gi|309788146|ref|ZP_07682752.1| flagellar basal-body rod flgG domain protein [Shigella dysenteriae 1617] gi|308923998|gb|EFP69499.1| flagellar basal-body rod flgG domain protein [Shigella dysenteriae 1617] Length = 82 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44 >gi|182680548|ref|YP_001834694.1| flagellar basal body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] gi|182636431|gb|ACB97205.1| flagellar basal-body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] Length = 262 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 2/178 (1%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + + + + + + + Q + +L + Sbjct: 82 VQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAFSTNATGQLVTTDGYLVNPNIT 141 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +V + + + + L N + + S Sbjct: 142 IPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTLTNFANEAGLTPLGSNL--YRQTEASG 199 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + F I++ Y T V+ +E++ LI +++Y +++K+I D+M T+ Sbjct: 200 TPVSGTPGDIGFATINQGYLETSNVDPVKEITDLISAQRAYEMNSKVIQAADEMATTI 257 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/258 (7%), Positives = 44/258 (17%), Gaps = 23/258 (8%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51 + A I NI N + + R T Sbjct: 3 ALSIAATGMAAQDLNVQVIANNIANMNTTAFKRARAEFTDLLYQAERLQGVANRGQSNMI 62 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTH 102 V + L + + + + + + + Sbjct: 63 PEGAQLGLGVRTAAIRNLHVQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAFST 122 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + Y N + I + T + + Sbjct: 123 NATGQLVTTDGYLVNPNITIPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTLTNFANEA 182 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 L S + + S + + I + Y Sbjct: 183 GLTPLGSNLYRQTEASGTPVSGTPGDIGFATINQGYLETSNVDPVKEITDLISAQRAYEM 242 Query: 223 DGTTLFETVPRDINFEKM 240 + + K Sbjct: 243 NSKVIQAADEMATTISKN 260 >gi|91791415|ref|YP_561066.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713417|gb|ABE53343.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 253 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 11/138 (7%), Positives = 31/138 (22%), Gaps = 18/138 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A++ + +Q +I NI N Y + + + + Sbjct: 1 MIDALYIAESGLDAKQKQLDAIAHNIANVSTPGYKTSQMSFMTVVQEDRDNSGQIVSSQG 60 Query: 63 F------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 + + F +++ +L Sbjct: 61 LGVMAQQSPLDMSVGKMEQTGRPLDVAINGAGFLEVEQ------GNGKLLYSRGGRLITD 114 Query: 111 LESYSKNLSEDILGKTVI 128 + Y + L + Sbjct: 115 AQGYLSTENGLRLTSMLQ 132 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 1/143 (0%) Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 I Y S + LR + +A L + + Sbjct: 112 ITDAQGYLSTENGLRLTSMLQIPPDAEDVRIATDGMLSAKLPGNEVIEIGQVQLVNFVDM 171 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 + N +++ ++ + + + + V++ +E+ ++ ++S Sbjct: 172 SAIKAVGNNLF-EVDQEALNTAYYGSVGESGMGVLQQGMLESSNVSMNQEMMNMMMAQRS 230 Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480 Y ++ +L+ +D++L+TL + Sbjct: 231 YQLNARLVQVSDQILETLNNLRR 253 >gi|321313186|ref|YP_004205473.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|291486214|dbj|BAI87289.1| flagellar hook-basal body protein [Bacillus subtilis subsp. natto BEST195] gi|320019460|gb|ADV94446.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 269 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 + N + D + ++KN+ + D Sbjct: 123 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 182 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 V +N L N + + + + + + + V++ E+++ Sbjct: 183 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI ++SY ++++ I D+ML L+ V+ Sbjct: 240 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 269 Score = 40.4 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N QQ +I N+ N++ Y +DT + Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44 >gi|114762164|ref|ZP_01441632.1| flagellar basal-body rod protein FlgG [Pelagibaca bermudensis HTCC2601] gi|114545188|gb|EAU48191.1| flagellar basal-body rod protein FlgG [Roseovarius sp. HTCC2601] Length = 261 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 8/221 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + D + QL AR + + L I Sbjct: 41 ADLHYQQVARAGTVSAADGTMLPTGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGR 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 T + + G + + ++ Sbjct: 101 GYFEVTLPSDLAGYTRDGALKRDGEGLIVTSDGLPVAPEIVIPDDATSLSINAEGEIYAY 160 Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + + G L N E S Q Y Sbjct: 161 FNDAVEAQLLGQLTLVGFTNPKGLEAIGGNLFT--ETEASGPPIQTTAGQDGLGTFRHGY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V+ E++ LI+ ++ Y +++K+I D+ML ++ Sbjct: 219 LEDSSVDPVYEITELIEAQRGYELNSKVISAADQMLGATVQ 259 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 18/248 (7%), Positives = 50/248 (20%), Gaps = 30/248 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I N+ N Y R Sbjct: 3 ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQVARAGTVSAADGTML 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V + + L + + + + + + Sbjct: 63 PTGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGRGYFEV------TLPSDLAGYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 L+ E + ++ + + N + ++ +++ + Sbjct: 117 DGALKRDGEGLIVTSDGLPVAPEIVIPDDATSLSINAEGEIYAYFNDAVEAQLLGQLTLV 176 Query: 164 RRFLSE--LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + + AS Q + + + S ++ Sbjct: 177 GFTNPKGLEAIGGNLFTETEASGPPIQTTAGQDGLGTFRHGYLEDSSVDPVYEITELIEA 236 Query: 222 SDGTTLFE 229 G L Sbjct: 237 QRGYELNS 244 >gi|89069822|ref|ZP_01157157.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus HTCC2516] gi|89044623|gb|EAR50739.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus HTCC2516] Length = 128 Score = 60.0 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 4/69 (5%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQR 56 MS + + + S + + NI N+D Y R+ + V Sbjct: 1 MSDFSQALDVVASGLRAQSARLRHVSENIANSDTPGYRRKTVTFRDAFGATAGEVAVGPV 60 Query: 57 SENKNMFDK 65 + + ++ Sbjct: 61 RLDDSALER 69 Score = 42.3 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 7/118 (5%) Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK-----NRSDSHDLH 422 +G D VT + + G + + S + Sbjct: 12 ASGLRAQSARLRHVSENIANSDTPGYRRKTVTFRDAFGATAGEVAVGPVRLDDSALERIF 71 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + V+L E++ + ++SY + K+ +M +LL+ ++ Sbjct: 72 DPAHPLAD--ESGHFEGSNVDLLIEIADAREAQRSYEANLKMFEQVRQMSTSLLDLLR 127 >gi|224532954|ref|ZP_03673563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] gi|224512118|gb|EEF82510.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] Length = 282 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPIVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|167585194|ref|ZP_02377582.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 269 Score = 59.7 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 22/264 (8%), Positives = 53/264 (20%), Gaps = 10/264 (3%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SEN 59 + + AS I NI NA+ + N + S Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTRISSVQ 65 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ ++ ++A+ F + + + + + + Sbjct: 66 QSFGQGTINTTNNALDVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGFIVDSQGRNLMGY 125 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 G + A +Q + R + + + T Sbjct: 126 NATAGGVINTAATVPLQAPTANLAPTATTRITGQFNLNSQDAVPATTPFSATDNTSYNYS 185 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + +D Q D+ K + Sbjct: 186 TSIQVYDTLGGAQQVDMYFVKSATAGQWEVYSGVKGQTPTDLGSVKFNTSGQIASTTPLA 245 Query: 240 MNSYTVTSESNPIFIDGVVVSSNQ 263 + + I G + Sbjct: 246 PVTGSTGQFKFTIPATGGSFTPQP 269 >gi|288958674|ref|YP_003449015.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910982|dbj|BAI72471.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 240 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 6/152 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56 + A + +Q NI N + Y + + T E V+ V R Sbjct: 1 MENSIYVAMSRQMALQRQLDVTSNNIANMNTTGYKNQRMLFTEFLEKPGLHEKVSFVQDR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + +++ + + + + Q + + + + Sbjct: 61 AVVRDLSNGAMTQTGNPLDLALTGQGYFTVDTASGPRYTRAGNFRMNDQRQLVDAGGLPV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + ++ V T A E+ + Sbjct: 121 LSNNGQPITLPAGTSDVKVSGDGTVATELGPV 152 >gi|225620642|ref|YP_002721900.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] gi|225215462|gb|ACN84196.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] Length = 282 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 17/258 (6%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T E + + + + + S ++ + + + +L + Sbjct: 37 DTVSFKAFPEMMAARTEDDGVVIFPLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETG 96 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + ++ G ++ + + + + +T Sbjct: 97 NQLDIALGDKGFFAIETPNGERYTRN--GSFLIDKDHYLVTKHGYKVMGENGYIQIKTNN 154 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N S R + +N L F+ Sbjct: 155 FNIDEEGRVSINRRYQDGNTFVQFNDNEWEDEEILDTLKIVRFDNERYLKKEGESF---- 210 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 W++ + S + K + + VN E+ +I+V+++Y Sbjct: 211 ----------WVDTDISGPAFIAEKGVN-RPKVLSRFLEMSNVNPINEMVRMIEVQRAYE 259 Query: 460 ISNKLIMFTDKMLQTLLE 477 +++K I D ++ ++ Sbjct: 260 LNSKTISTHDTLVGRVIN 277 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/185 (7%), Positives = 31/185 (16%), Gaps = 40/185 (21%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45 + + + N+ N D + R Sbjct: 6 YTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKAFPEMMAARTEDDGVVIFPLGST 65 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V L + + + F A+ + N Sbjct: 66 DVRPYVGRMGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGFFAI-------ETPN 115 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + Y + + V R D Sbjct: 116 GERYTRNGSFLIDKDHYLVTKHGYKVMGENGYIQIKTNNFNIDEEGRVSINRRYQDGNTF 175 Query: 158 LEISN 162 ++ ++ Sbjct: 176 VQFND 180 >gi|195941596|ref|ZP_03086978.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi 80a] gi|216264480|ref|ZP_03436472.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226320635|ref|ZP_03796194.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|215980953|gb|EEC21760.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226233958|gb|EEH32680.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|312148084|gb|ADQ30743.1| flagellar hook-basal body complex protein [Borrelia burgdorferi JD1] gi|312149492|gb|ADQ29563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi N40] Length = 282 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|218249387|ref|YP_002375274.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221217927|ref|ZP_03589394.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224533400|ref|ZP_03673994.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225549985|ref|ZP_03770946.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] gi|218164575|gb|ACK74636.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221192233|gb|EEE18453.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224513565|gb|EEF83922.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225369444|gb|EEG98896.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] Length = 282 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|212640498|ref|YP_002317018.1| flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] gi|212561978|gb|ACJ35033.1| Flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] Length = 274 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/285 (9%), Positives = 70/285 (24%), Gaps = 21/285 (7%) Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255 + ++ + + + + N + + E + + + + Sbjct: 10 NTMNQLQQQLDVISHNIANVNTTGFKKRDAVFGELLAQQFTNLPTTDEAPRLTPAGVRLG 69 Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315 ++ + +G + + D + I + S N P Sbjct: 70 VGAKVASTYMQMKQGSVVKTDRPLDLALTKEGQFFRIFVDGAIQYTRDGAFYLSPSANNP 129 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 + T+ + + N+ Sbjct: 130 DELMIVTADGYAVLNENDEPITVRDGFKDIQVTQNGTMQFIAPNGNIMQTVNIGVSYITR 189 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 + N P + T+ N + + Sbjct: 190 PQLMQALGDNRFAFPNGLNVEDATINLAGNNRNNI--------------------SLQQY 229 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V L E+S L+ ++SY ++ + I +D+M+ L+ G++ Sbjct: 230 ALEQSNVELATEMSELMITQRSYQLNARAITLSDQMMG-LINGIR 273 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +L A N N QQ I NI N + + +RD + Sbjct: 1 MLRSMITAANTMNQLQQQLDVISHNIANVNTTGFKKRDAVFGEL 44 >gi|203284214|ref|YP_002221954.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|203287753|ref|YP_002222768.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201083657|gb|ACH93248.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201084973|gb|ACH94547.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 154 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M L + N A + I NI N + Y R + Sbjct: 3 MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTADGGAYRRERIIFA 52 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 108 GYVEFPNVNVVEEMVDMISASRAYEANSSVINSSKSMFRSALSILQ 153 >gi|149173757|ref|ZP_01852386.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] gi|148847287|gb|EDL61621.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] Length = 266 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 2/168 (1%) Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 + DG +DL + ++ + + N+ Sbjct: 100 GDGFFRVNDGTQDLYTRAGNFSLNANGNLVMASADKGYQLQPTISIPQDAINITISGDGV 159 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + +A N L+ N E S + Sbjct: 160 VSYQQQGSTQIQTAGNIQIARFINNQGLVRQGDNLYT--ETTGSGPSQFGDPGTEGRGQL 217 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V EL LIK ++++ ++++++ D+ LQT+ + Sbjct: 218 RQGFLEQSNVEPVRELVELIKTQRNFELNSQVVQAADQTLQTVANLRR 265 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 15/220 (6%), Positives = 42/220 (19%), Gaps = 31/220 (14%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47 + S I N+ N+ Y + +P Sbjct: 5 ALYSSATGMAANSFNLDIIANNLANSSTTAYKQSRANFEDIFYENFKLPGVQDNQGNITP 64 Query: 48 ENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + + + + + + F + + Sbjct: 65 TGIALGIGTRVQSTEGDFEQGSILPSNGTYDLAIVGDGFFRVND-------GTQDLYTRA 117 Query: 105 SKLRDSLESYSKNLS---EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + S L T+ + + + + + + I Sbjct: 118 GNFSLNANGNLVMASADKGYQLQPTISIPQDAINITISGDGVVSYQQQGSTQIQTAGNIQ 177 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 R ++ V + + F D ++ Sbjct: 178 IARFINNQGLVRQGDNLYTETTGSGPSQFGDPGTEGRGQL 217 >gi|259417939|ref|ZP_05741858.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] gi|259346845|gb|EEW58659.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] Length = 261 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 8/216 (3%) Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + + D V Q+ R S + N + I Sbjct: 41 ADLHYQQISRAGTVNASDGTVLPTGVQVGLGVRPAAVSVYLNQGALSQTGNELDVAIDGN 100 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + T + + + + + G + ++ ++ Sbjct: 101 GYFEVTLPSGETAYTRDGSFKRSAEGLIVTNDGYPVSPEITIPEDANSISINAEGEVYAY 160 Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436 + + ++G L N + + S + + + Y Sbjct: 161 FNDTVEAELLGQLTLSGFTNPKGLEAVGSNL--FKQTEASGQPNTTEPGADGVGTLRQKY 218 Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+ E++ LI+ ++ Y +++K+I D+M+ Sbjct: 219 LEDSSVDAVREITELIEAQRGYEMNSKVISAVDQMM 254 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + + L + + + + + Sbjct: 63 PTGVQVGLGVRPAAVSVYLNQGALSQTGNELDVAIDGNGYFEV------TLPSGETAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL 123 + S E + Sbjct: 117 DGSFKRSAEGLIVTNDGYPV 136 >gi|213026536|ref|ZP_03340983.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 110 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 13/115 (11%), Positives = 26/115 (22%), Gaps = 9/115 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62 F++A + N A+ I NI N+ + V ++ Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 D + F L + + + + N Sbjct: 62 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVN 110 >gi|217976225|ref|YP_002360372.1| flagellar basal body rod protein FlgG [Methylocella silvestris BL2] gi|217501601|gb|ACK49010.1| flagellar basal-body rod protein FlgG [Methylocella silvestris BL2] Length = 262 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 55/180 (30%), Gaps = 2/180 (1%) Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 + + I + + + D + + Q ++ ++ Sbjct: 76 SIRNLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGAFNTNGTGQIVTSDGYI 135 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + +V + +A L N + Sbjct: 136 VSPTMIVPTNAVDVTVSQSGMVSATLSGQPAPQQLGQISLANFANEAGLTPLGNNL--YR 193 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + S S + + F +S+SY + V+ +E++ LI +++Y +++K+I +M Sbjct: 194 QTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIAAQRAYEMNSKVIQAASEM 253 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/261 (7%), Positives = 46/261 (17%), Gaps = 29/261 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 + A A I NI N + + R T Sbjct: 3 ALSIAATGMAAQDLNVAVIANNIANINTTGFKRARAEFTDLLYQAERLQGVSSRGQSNTI 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS- 99 V + R L + + + + + + + Sbjct: 63 PEGAQLGLGVRTASIR---NLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGA 119 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + Y + + + V + T + + + Sbjct: 120 FNTNGTGQIVTSDGYIVSPTMIVPTNAVDVTVSQSGMVSATLSGQPAPQQLGQISLANFA 179 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 L + S + + I Sbjct: 180 NEAGLTPLGNNLYRQTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIAAQRA 239 Query: 220 YTSDGTTLFETVPRDINFEKM 240 Y + + + K Sbjct: 240 YEMNSKVIQAASEMESTVSKN 260 >gi|220932495|ref|YP_002509403.1| flagellar basal body rod protein [Halothermothrix orenii H 168] gi|219993805|gb|ACL70408.1| flagellar basal body rod protein [Halothermothrix orenii H 168] Length = 248 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/254 (8%), Positives = 61/254 (24%), Gaps = 34/254 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------------RDTMT 43 ++ A + ++ + N+ N + Y R + T Sbjct: 1 MIKGIYTAASSMVTNQRKMKLVANNLANVNTAGYKRDEGIQVSFPEVFISRLEKGQATPL 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + + + + ++ + + F + Sbjct: 61 GELGTGVKIEE---DYTDFREGQMNHTGNPLDVAIDGNGF-------FVVETPRGRRYTR 110 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + + + + Q + + + L + Sbjct: 111 NGNFTVNEQGQIVTQQGYPVLGE-RGPLQTIRGRNISINTDGQLYLDNLEGDRLLIVDFE 169 Query: 164 RRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 R + E VN+ I+ AS + + + + I + V Sbjct: 170 NRQGLRKIGENLYVNEGIREIQASDYQIKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKV 229 Query: 220 YTSDGTTLFETVPR 233 + TL + V Sbjct: 230 IKNADQTLSKAVNN 243 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + Y T VN+ +E+ +I+V +++ ++ K+I D+ L + V Sbjct: 196 QIKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKVIKNADQTLSKAVNNV 244 >gi|84514831|ref|ZP_01002194.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] gi|84510990|gb|EAQ07444.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] Length = 261 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 2/166 (1%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + F + D + S + + + ++ V Sbjct: 91 NSFDLAIEGQGFFQVLMPDGRVGYTRNGSFSRSADGTMTTASGYVVQPEIRIPADATEVN 150 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + + +A L + + S + + Sbjct: 151 ISQDGLVSVRQAGEEEAQEVGQLTIASFANPRGLQPIGESFVTQ--TLASGAPTVAAPQA 208 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + VN+ ++L +I+ +++Y +S+K I +D+M+ Sbjct: 209 QGLGKLMQGALEGSNVNVVQQLVEMIETQRAYEVSSKAISSSDEMM 254 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 13/152 (8%), Positives = 30/152 (19%), Gaps = 27/152 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51 + + A+ N + I N+ N + + V Sbjct: 1 MTNAMHVAKTGLNAQQTRMQVIANNLANLNTVGFKSDRVNFESLLYQVKRSGGDQTSEGT 60 Query: 52 --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 R+ N + ++ Q F + Sbjct: 61 ALTSALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIEGQGFFQVL------MPDGRVGY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 S + S ++ + A+ Sbjct: 115 TRNGSFSRSADGTMTTASGYVVQPEIRIPADA 146 >gi|303239789|ref|ZP_07326313.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592726|gb|EFL62450.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 265 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 6/216 (2%) Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325 GK L S + + + V G + Sbjct: 55 MDGDGKPVNLQVGHGSSIVATSKSFGIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTR- 113 Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385 D +SE P G ++ + ++ + +L Sbjct: 114 -DGNFKISVSEDGNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVP 172 Query: 386 FIF-DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + + L N N + + +++ + Y + V + Sbjct: 173 LGQKIGIVKFSNRQGLESMGSNLY---ASNSASGEAVQDAEMGTVSNVKQYYIESSNVQV 229 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE+ LI +++Y I++K + D ML + Sbjct: 230 VEEMVKLIVAQRAYEINSKAVQTADDMLGIANSLKR 265 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/233 (7%), Positives = 49/233 (21%), Gaps = 22/233 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 ++ A + I N+ N + Y + Sbjct: 1 MMRALWTAGSGMTAQQLSVDVISNNLSNVNTTAYKKERVEFKDMLYETLNRASVMDGDGK 60 Query: 47 ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-- 101 + + + +K+ L + + F + + + Sbjct: 61 PVNLQVGHGSSIVATSKSFGIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTRDGNFKIS 120 Query: 102 -HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + Y +D ++ +V +F + + + Sbjct: 121 VSEDGNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVPLGQKIGIV 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 R E N + + + + Q E + + Sbjct: 181 KFSNRQGLESMGSNLYASNSASGEAVQDAEMGTVSNVKQYYIESSNVQVVEEM 233 >gi|296126376|ref|YP_003633628.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296018192|gb|ADG71429.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 282 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 72/258 (27%), Gaps = 17/258 (6%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 T + E + + + + + S ++ + + + +L + Sbjct: 37 DTVSFKSFPEMMAARTEDDGVVIFPLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETG 96 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + ++ G ++ + + + + +T Sbjct: 97 NQLDIALGDKGFFAVETPHGERYTRN--GSFLIDKDHYLVTKHGYKVMGENGYIQIKTNN 154 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 N S R + +N D+ + + Sbjct: 155 FNIDEEGRVSINRRYQDGNTFVQFNDNEWED-----EEILDTLKIVRFDNERYLKKEGES 209 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 W++ + S + K V + + VN E+ +I+V+++Y Sbjct: 210 F---------WVDTDISGPAYIAQKG-VDRPKVLSRFLEMSNVNPVNEMVRMIEVQRAYE 259 Query: 460 ISNKLIMFTDKMLQTLLE 477 +++K I D ++ ++ Sbjct: 260 LNSKTISTHDTLVGRVIN 277 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/185 (7%), Positives = 30/185 (16%), Gaps = 40/185 (21%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45 + + + N+ N D + R Sbjct: 6 YTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKSFPEMMAARTEDDGVVIFPLGST 65 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V L + + + F A + + Sbjct: 66 DVRPYVGRMGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGF-------FAVETPH 115 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + Y + + V R D Sbjct: 116 GERYTRNGSFLIDKDHYLVTKHGYKVMGENGYIQIKTNNFNIDEEGRVSINRRYQDGNTF 175 Query: 158 LEISN 162 ++ ++ Sbjct: 176 VQFND 180 >gi|260893854|ref|YP_003239951.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260865995|gb|ACX53101.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 260 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 8/158 (5%), Positives = 25/158 (15%), Gaps = 16/158 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------------TTIS 46 ++ A + N N+ N + + T Sbjct: 1 MIRGIYIAASGLNLQQALLDVTANNLANLSTPGFKQDRLTATTFAEVLLYRLEREGITAI 60 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 + L + + + F + + Sbjct: 61 GTTNYGTLPERSYTDFTQGALVETGNYRDVALVGEGFLVADTPQGIRYFRSGTLFVDREG 120 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + + ++ + A Sbjct: 121 YLTTATGDRVLGEGRRPIQVGEESFTILPDGTVEVAGR 158 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 25/51 (49%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 V + + + V+L E++ L ++Y ++++ + D++L ++ Sbjct: 204 AVGTLVRQGWLEAANVDLAGEMARLCTCLRAYQLASRALKTHDELLNRIIN 254 >gi|218677554|ref|ZP_03525451.1| flagellar basal body rod protein FlgG [Rhizobium etli CIAT 894] Length = 205 Score = 59.7 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 4/169 (2%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + I+ D + N Q + + + Sbjct: 30 TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDGYEVLPGITIPTGS 89 Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + ++ +A L N + E S + Sbjct: 90 TELTISRSGEVSAKLPGATSATTLGQLTLADFVNEAGLQPIGDNL--FQETAASGDAVVG 147 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F ++ + Y + V+ +E++ LI +++Y +++K+I D+M Sbjct: 148 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 196 >gi|197104381|ref|YP_002129758.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] gi|196477801|gb|ACG77329.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] Length = 262 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 2/166 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + F + + + + ++ Q + + + G + +V Sbjct: 93 LDMAIDGRGFFQVLLPSGETAYTRAGNLSVNDQGQLVTQDGYPIEPGITIPQDAVDVAIS 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 + + +A L N + E S + + Sbjct: 153 KSGQVQVTQAGQTAPTIVGQLELATFLNEGGLQAQGSNL--FKETAASGPPTNGIPGENG 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + Y+ V+ E++ LI +++Y +++K+I D ML T Sbjct: 211 VGELIQGYTEASNVDAVAEITALIVAQRAYEMNSKVISTADNMLAT 256 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/221 (6%), Positives = 39/221 (17%), Gaps = 34/221 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A I NI N + + R+ Sbjct: 3 ALRTAATGMAAQQLNVEVISNNIANMNTVAFKRQRAEFQDLLYQTFEAAGVQSSDQGTIV 62 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + L + + + F + + Sbjct: 63 PTGVQVGAGVKAGSVYRI---ATQGTLTRTENKLDMAIDGRGFFQVL------LPSGETA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 L + + + + + V + S + I ++ Sbjct: 114 YTRAGNLSVNDQGQLVTQDGYPIEPGITIPQDAVDVAISKSGQVQVTQAGQTAPTIVGQL 173 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + FK + + + ++ Sbjct: 174 ELATFLNEGGLQAQGSNLFKETAASGPPTNGIPGENGVGEL 214 >gi|291280521|ref|YP_003497356.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755223|dbj|BAI81600.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 254 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 24/150 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44 +L A + +++ I N+ N + +Y R D + Sbjct: 1 MLNGLYTATSGMLAQNRKLEIISNNLANINTTSYKREDAIFRDYLYHDKRTPQDIIKASE 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + V+ S + L + K A + Sbjct: 61 YNKTINNTVSLDSIYTDFSPGNLRQTGNRFDLA------LENKNTFFAVETPFGIRFTRD 114 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134 + N + +N E + Sbjct: 115 GHFTLDKDRRLVNQDGFPVLSRNFENNEGI 144 Score = 38.5 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 19/40 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + Y VN +E+ +I+ + + K+I D++ Sbjct: 203 VRQGYLEGSNVNPVKEMVSMIESMRGFETYQKVIQTIDEI 242 >gi|68164563|gb|AAY87292.1| predicted flagellar basal-body rod protein [uncultured bacterium BAC17H8] Length = 259 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 2/114 (1%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + L +V ++ + Y D + +A + L + + Sbjct: 139 DAAGNETLLDVIKISNTGKIQLTYGDGEMVDAGTLALAHFANSGGLKPVGGSY--FKATE 196 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +S L +Q F I + + N+ EL+ L+ +Q+++ S++L+ Sbjct: 197 KSGPAILGSPTQQNFGEIVQGHLEMSNTNVANELTKLMVSQQAFSASSRLMQSA 250 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 28/136 (20%), Gaps = 19/136 (13%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENVTVVT 54 + +N A+ + I NI N+ + + R D V Sbjct: 2 ISTIRNALKMATTDISIISNNIANSGSTGFKRSDGNFLHSYAEEIPIPGLNVGFGVVHEE 61 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R ++ L ++++ ++ Sbjct: 62 PRRQDHK--QGSLRVTNNSLDLAINGGGMF-----VALKPDDGEVTFSRDGSFLIDFVGN 114 Query: 115 SKNLSEDILGKTVIDN 130 + + Sbjct: 115 LVTTDNRRVVGANGEQ 130 >gi|46204473|ref|ZP_00049952.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + N ++ + Y + VA L A + + + Sbjct: 8 QNGYASGTLNSVDVGENGVITGKYSNGSLIGLARVEVAQFVNPDGLK--ADSLGNYQQTV 65 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S +K V ++ E S +I +Q+Y+ + +++ M+ Sbjct: 66 ASGEAISGLKDTTVVGA----NVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISD 121 Query: 475 LLEGVK 480 LL ++ Sbjct: 122 LLNVIR 127 >gi|320536024|ref|ZP_08036083.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] gi|320147123|gb|EFW38680.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] Length = 271 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 35/168 (20%), Gaps = 40/168 (23%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46 A + N QQ I N+ N D +Y R R T S Sbjct: 6 YTAASGMNAQQQQLDVISNNLANVDTTSYKRDVTINKNFPELLLRRTNDDGVIKNPFGSS 65 Query: 47 ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V L S + F A++ + Sbjct: 66 DAAPIIGKLGLGVEVNEV---FTEFEQGSLKQTHSPSDIALEGKGFFAVQTPQREE---- 118 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 +E Y + + ++ E+ Sbjct: 119 ---YTRNGNFLVGVEGYLMTKEGYPVLGENGRIFLQDMEYKINQNGEI 163 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + VN+ E+ +I+V ++Y + K I D M+ L Sbjct: 222 QGFIEASNVNVVNEMVRMIEVNRAYEANQKTIQSEDTMMAKLWN 265 >gi|84502379|ref|ZP_01000515.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] gi|84389191|gb|EAQ01988.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] Length = 261 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 2/166 (1%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + + + D + + S + Q + + + G V + V+ Sbjct: 93 TDLAIEGRGYFVVNMPDGNAAYTRDGSLRLNAEGQIVTQQGYEVNPGIVVPQDTTRVEIG 152 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 D+ +A + + N + S Sbjct: 153 ETGIVSAYVGNDAIPVEIGQLTLATFINDAGMRPLGNNLLA--ATVASGDPTQANPGDPA 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + Y T VN+ ++++ LI +++Y +++K I D+M+ T Sbjct: 211 VGILRQGYLETSNVNIIQQITDLISAQRAYEMNSKSIETADQMMST 256 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 7/41 (17%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A I NI NA + Sbjct: 3 ALGIAATGMMAQQTNVDVISNNIANASTTGFKSARASFQDL 43 >gi|300870979|ref|YP_003785850.1| flagellar basal body rod protein FlgC [Brachyspira pilosicoli 95/1000] gi|300688678|gb|ADK31349.1| flagellar basal body rod protein, FlgC [Brachyspira pilosicoli 95/1000] Length = 153 Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43 M + ++ N + + + I NI N + + R + Sbjct: 1 MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVVF 49 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN E+ +++ ++Y ++ +I M + L ++ Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152 >gi|295707198|ref|YP_003600273.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] gi|294804857|gb|ADF41923.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] Length = 273 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/276 (10%), Positives = 70/276 (25%), Gaps = 7/276 (2%) Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 I+ G L T + + + D Sbjct: 4 TMITAANTMGQLQQQLDVIGHNLSNTNTTGYKARDASFNDMLYQQVNNQEDKGTEKRLTP 63 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 + + +G L Q +++ D++ V + + + +A N P + DG Sbjct: 64 AGIRQGTGAYLDQTSLNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQPVQYTRDGSF 123 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + + + K + + Sbjct: 124 HISPQGPNNVKLVNGSGQDVLGENGQAIIFSNAFKDIQIDGSGTITVTTNKGVDQFTLGL 183 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + P L + + + V+L Sbjct: 184 TNVQKPQVLEAKGENLFAFPAEMNQPNMFTDLTGKARETAG------VEQGKLEQSNVDL 237 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +EL+ + +++Y +++ I D+M+ L+ G++ Sbjct: 238 SKELTDMSIAQRAYQFNSRSISIADQMMG-LVNGIR 272 Score = 41.6 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 43/188 (22%), Gaps = 7/188 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A N QQ I N+ N + Y RD ++ Sbjct: 1 MNRTMITAANTMGQLQQQLDVIGHNLSNTNTTGYKARDASFNDMLY----QQVNNQEDKG 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +K L G L MM + + + N S+ Sbjct: 57 TEKRLTPAGIRQGTGAYLDQTS--LNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQP 114 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + T + Q N + V D E I F + I T Sbjct: 115 VQYTRDGSFHISPQGPNNV-KLVNGSGQDVLGENGQAIIFSNAFKDIQIDGSGTITVTTN 173 Query: 183 SKHDAHDF 190 D Sbjct: 174 KGVDQFTL 181 >gi|118444095|ref|YP_878000.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134551|gb|ABK61595.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 258 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 29/141 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L +++ ++ +I N+ N+ Y R D Sbjct: 1 MLRSIWNSRSGMAAEMEKLNTISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVTKGK 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + V +N L + + F +++ + Sbjct: 61 PQFTGTGVRATEIERDNSQ---GNLLQTGNNTDIAIDGEGFFKVQD------GEGRTFYT 111 Query: 103 YISKLRDSLESYSKNLSEDIL 123 + S + L Sbjct: 112 RGGSFNIDNLGTVVDKSGNRL 132 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 24/41 (58%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + Y+ V+L +E++ LI ++++ +++ + D+M Sbjct: 208 SLLQGYTEQSNVDLGKEMADLIITQRAFQLNSSALKTADEM 248 >gi|257457573|ref|ZP_05622740.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444959|gb|EEV20035.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 271 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 29/148 (19%), Gaps = 40/148 (27%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---------------------TTIS 46 A + N +Q I +N+ NAD +Y R S Sbjct: 6 YTAASGMNAQQKQLDVIAQNLANADTTSYKRDVATHKNFPELLIRRLNDDGVVKNPFGSS 65 Query: 47 ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V + L ++A + F + Sbjct: 66 DVAPIIGKLGLGVELNEI---FTEFEQGSLKQTNTASDLALEGKGF-------FCVETPY 115 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGK 125 +E Y + Sbjct: 116 GERYTRNGNFTVGVEGYLMTKEGYPVLG 143 Score = 44.6 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + + E+ +I+V ++Y + K I D M+ L Sbjct: 220 VVQGFVEASNIKVVNEMVRMIEVNRAYEANQKTIQSEDTMMSKLWN 265 >gi|326389273|ref|ZP_08210841.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] gi|325994636|gb|EGD53060.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] Length = 251 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 67/252 (26%), Gaps = 28/252 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 +L A + ++ +V N+ N + Y R +T+ P Sbjct: 1 MLRGLYTASSGMITQTKIMDVLVNNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60 Query: 49 --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V T + N + + + F + + S Sbjct: 61 GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 T + E Y + + D + + + N + + V ++R + Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + T + + + ++ IS + ++ V Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234 Query: 221 TSDGTTLFETVP 232 + TL + V Sbjct: 235 IAFDETLGKAVN 246 Score = 41.9 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K+++ D+ L + Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246 >gi|296127542|ref|YP_003634794.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM 12563] gi|296019358|gb|ADG72595.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM 12563] Length = 153 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43 M + ++ N + + + I NI N + + R + Sbjct: 1 MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIF 49 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN E+ +++ ++Y ++ +I M + L ++ Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152 >gi|322383079|ref|ZP_08056906.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152741|gb|EFX45367.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 271 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 4/203 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L + + + + + + + K +L Sbjct: 61 GLQLGWGARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVM 120 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + +G + K + + V Sbjct: 121 PGNQGLALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQ 180 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVNLQEELS 449 I L N V + + Y VNL +E++ Sbjct: 181 IERPQLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVNLSDEMT 240 Query: 450 FLIKVEQSYNISNKLIMFTDKML 472 LI V++++ +S++ + +D M+ Sbjct: 241 ELINVQRAFQLSSRAVTSSDSMM 263 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51 N + + N Q+ + NI N + Y R+D ++V Sbjct: 2 INASVS-MNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVK 45 >gi|323174793|gb|EFZ60408.1| flagellar basal-body rod protein flgG domain protein [Escherichia coli LT-68] Length = 79 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44 >gi|302338075|ref|YP_003803281.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae DSM 11293] gi|301635260|gb|ADK80687.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae DSM 11293] Length = 152 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43 M L + N A + + + NI NA + + R + Sbjct: 1 MGLFSSINVAATGMSAQRLRLDVVSDNIANASTARTPEGGPFRRSRVIF 49 Score = 38.9 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ EE+ ++ +SY + ++ + M LE + Sbjct: 107 GYVEMPNVNIVEEMVDMMSASRSYEANVAVVNGSKAMFMRALEIGR 152 >gi|317011118|gb|ADU84865.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 605 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/246 (7%), Positives = 63/246 (25%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N +++K+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K L+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQEFLLNDKGEVIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 15/232 (6%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 S++ S+ + +++ +V + D ++ P Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKTPINEPTWEIVGFDSATHKMKSAPMT 436 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 G K SE + + L + ++ + + Sbjct: 437 LDFKGNKL---TYSLDKSENHDSSDLTYQDSKLLEASQDGKPRGIFRDMRIEENGVISLA 493 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428 + + + + + L + N E + + + ++ Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNVYEMQESTINGENRPLSGNPILGWDEEGKLK 553 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I Y T VN L+ LI +++ Y+++ K D M++ + K Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKEAISLKK 605 >gi|255523679|ref|ZP_05390645.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|255512548|gb|EET88822.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] Length = 264 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/272 (8%), Positives = 54/272 (19%), Gaps = 36/272 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + +++ N + SI NI N Y R D Sbjct: 1 MLRILWGSKSAMNAQQDKLDSISNNIANESTTGYKREDVSFQDLVYETLNRKGYPNSGDN 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V +N L S + + + Sbjct: 61 PKEPINGTGVKATQWYRDN---TQGPLRQTDSKTDFAIDGEGYFRV------TLPNGTKA 111 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + L + + + + + E+ + Sbjct: 112 YERAGSFNIDNNGDIVDKDGNRLDIEFTEEGSNLFNS----GTGFTQDNFAVKENGEIYL 167 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + +N + D L + +I+ + + + V Sbjct: 168 NVDNSNSVYYGKINVYNPVGQEALSSIGDNLYTAN-PGAQINVAQNSNVLQGKLEESNVN 226 Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252 T R T + Sbjct: 227 IGKEMTDMIIAQRAFELSSKAMKTGDEMWGLV 258 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 63/223 (28%), Gaps = 16/223 (7%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 N + +KA RD+ + + + + Sbjct: 56 NSGDNPKEPINGTGVKATQWYRDNTQGPLRQT--DSKTDFAIDGEGYFRVTLPNGTKAYE 113 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 D + + + + + + + F + + ++ + Sbjct: 114 RAGSFNIDNNGDIVDKDGNRLDIEFTEEGS-----NLFNSGTGFTQDNFAVKENGEIYLN 168 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437 +S + + V L N + ++ V + Sbjct: 169 VDNSNSVYYGKINVYNPVGQEALSSIGDNLY----TANPGAQINVAQNSNVL----QGKL 220 Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ +E++ +I ++++ +S+K + D+M L+ +K Sbjct: 221 EESNVNIGKEMTDMIIAQRAFELSSKAMKTGDEMWG-LVNSMK 262 >gi|154174960|ref|YP_001407311.1| hypothetical protein CCV52592_2049 [Campylobacter curvus 525.92] gi|153793155|gb|EAU00899.2| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 533 Score = 58.9 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/398 (9%), Positives = 112/398 (28%), Gaps = 8/398 (2%) Query: 91 SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 + + + ++ ++++ + ++ L ++ + A K+ Sbjct: 135 FTPTTPSQNALKKFGQSQNIPQAFTLSQTDLSLAAEGAQTGIKLPKFLYLPAEATTKVNL 194 Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + + L S L + + + L+K ++ Sbjct: 195 KGNLDSSLITSQTSTQLDSTSYTYTLDNANKTISLSGQVTIGGANSGLKKGDSVVVKVED 254 Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270 D + + I + M S V++++ G Sbjct: 255 ASGKFSEFSTQIDENGNWSLNNQSIKYMDMASLNVSAKAIGNIEVANTQKLTTDLFNADG 314 Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI------AGNSENVPGLFIADGIK 324 L +P N+ A I + +S + Sbjct: 315 TKSLLTLNLTKKIPQASNETVWNATATITDSAGNVQNSASGALTFDSSGRLVSNTLASVG 374 Query: 325 DLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 ++ + +N + + L + ++ ++I ++ ++ Sbjct: 375 NVALNFGGNGDANVYNGMTSAANKNKNFNITRDGYAEGLLSKYSMDDSGNVIANFDNTRT 434 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGV 442 + + + N + + Q ++ I + V Sbjct: 435 FPVAKVALYHFQNEQGVSKVGDNLYEATPNSGEAFFYKNKAGQTIYGANIIANKLEMSNV 494 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +L + L+ +I ++++Y+ S K I +D+M+QT ++ + Sbjct: 495 DLGQALTEVIVIQKAYDASAKSITTSDEMIQTAIKMKQ 532 >gi|242309753|ref|ZP_04808908.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] gi|239523754|gb|EEQ63620.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] Length = 277 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 29/143 (20%), Gaps = 25/143 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 + F + + I NI NA+ + R D + Sbjct: 1 MQGGFYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIEDQ 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 N ++ + D + + + + + + Sbjct: 61 TKDAAKFYNRSLNRVPQIVEEFTD---RSAGGVVQTENTFDFALSRENAYFMIETPEGIR 117 Query: 101 THYISKLRDSLESYSKNLSEDIL 123 + E N + Sbjct: 118 FSRDGSFVLNEEGRLVNKEGYAV 140 >gi|167463161|ref|ZP_02328250.1| flagellar hook-basal body protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 275 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 4/203 (1%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L + + + + + + + K +L Sbjct: 65 GLQLGWGARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVM 124 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + +G + K + + V Sbjct: 125 PGNQGLALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQ 184 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVNLQEELS 449 I L N V + + Y VNL +E++ Sbjct: 185 IERPQLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVNLSDEMT 244 Query: 450 FLIKVEQSYNISNKLIMFTDKML 472 LI V++++ +S++ + +D M+ Sbjct: 245 ELINVQRAFQLSSRAVTSSDSMM 267 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 17/49 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51 + A N Q+ + NI N + Y R+D ++V Sbjct: 1 MNHSMINASVSMNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVK 49 >gi|160939651|ref|ZP_02086999.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] gi|158437442|gb|EDP15206.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 4/157 (2%) Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383 IS T N S+ S++ D + + G D D Sbjct: 92 PAYTRDGAFQISSTDDGNYLTTSDGSYVLDQDGEPIELEYKTSEDGGDNDAGELDLDGLV 151 Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 + + L N E + + + + N Sbjct: 152 ERIG---LFVCENPEGLQHVGMNLFRTGETSGEWLSMDDLDDEQEKSKAMSHALEMSNCN 208 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + E+ L++ ++++ ++++++ D+M + ++ ++ Sbjct: 209 MSTEMVNLMQTQRAFQLNSRIVTTADQM-EEMINNLR 244 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 18/199 (9%), Positives = 47/199 (23%), Gaps = 10/199 (5%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVTQRSEN---KNMF 63 N + N+ N Y + V + Sbjct: 1 MNAFQKDLDVTSNNMANISTNGYKSMRSSFNDLLYTQMDMRPQAQVGHGVRNDGPGTTFQ 60 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + + +F A++ ++ + D + + +L Sbjct: 61 QGIFRKTDRELDFAISGNAFFAIQTSEDEEEPAYTRDGAFQISSTDDGNYLTTSDGSYVL 120 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + E + + + ++ D E + +N +T+ Sbjct: 121 DQDGEPIELEYKTSEDGGDNDAGELDLDGLVERIGLFVCENPEGLQHVGMNLFRTGETSG 180 Query: 184 KHDAHDFLDQRDVLLQKIS 202 + + D LD + +S Sbjct: 181 EWLSMDDLDDEQEKSKAMS 199 >gi|288554367|ref|YP_003426302.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] gi|288545527|gb|ADC49410.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] Length = 281 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 15/243 (6%) Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297 T N I + + + +G I+ + D + + + + Sbjct: 53 TDTRYETGRLTPNGIRVGAGAKIAQTALRMEQGAIQNTDRRLDFAITQPNHFFEVQSVEN 112 Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + N N + L G + Sbjct: 113 GQAVNRLTREGAFYLNEDPDNPGQLTIVNANGEYLLDGGGNRFTLPMNFSDIQLSPTGEL 172 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 NV + H + D I L + + + Sbjct: 173 RVTLNDNVTTEELGQVQLIHVLKPHLLEAVGDTHFTIPNLENLGLMDADMFEQVPGDE-- 230 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ VN+ +E++ L++ ++ Y + + + D+M L+ Sbjct: 231 ------------GRLMQNALEQSNVNIAQEMNELLQTQRHYQFNARALSMADEM-NGLIN 277 Query: 478 GVK 480 G++ Sbjct: 278 GIR 280 Score = 44.3 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 4/29 (13%), Positives = 14/29 (48%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ ++ N+ N++ + RR+ + Sbjct: 16 QRKMDTLSHNMANSNTTGFKRREATFSDL 44 >gi|119953550|ref|YP_945760.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] gi|119862321|gb|AAX18089.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] Length = 286 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 2/122 (1%) Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + N L++ Y +S+ + D + +N T + S W Sbjct: 162 TAQGQIFHNSTFERNPKKLVSEYENSWENYELLDNLKIVNFEKTRFLQKQGSSLWNSTEI 221 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 S + I VN E+ +I V ++Y + K I D +L L Sbjct: 222 SGQARNIEINS--RPKIETGTLEGSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKL 279 Query: 476 LE 477 + Sbjct: 280 IN 281 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/208 (6%), Positives = 33/208 (15%), Gaps = 40/208 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT-------------------- 41 A + + I N+ N D Y + + Sbjct: 8 GIYTAASGMMAQRHRLDVIANNLANIDLTGYKKDLSVQKAFPEMLIRRINDDGLYKFPKG 67 Query: 42 ------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 + V + L + + E Sbjct: 68 YLETAPVIGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------DEGFFVVQT 117 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 E + + T+ ++ Sbjct: 118 PEGERYTRNGSFILGAEGILMTKDGYPVIGEKGYIYLKDNNFKITAQGQIFHNSTFERNP 177 Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183 +L + + + N I + Sbjct: 178 KKLVSEYENSWENYELLDNLKIVNFEKT 205 >gi|302874614|ref|YP_003843247.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690775|ref|ZP_07633221.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577471|gb|ADL51483.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 255 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 69/246 (28%), Gaps = 3/246 (1%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 +LF +N ++ T+++ + G + S + L Sbjct: 3 SLFWNSKSSMNAQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKDTE 62 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 L L + + V F DG G Sbjct: 63 L---LIGTGTRLASTIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKI 119 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + L D +N + + P+ D + + Sbjct: 120 DSNGDLCDDKGNYLSIEFNGQPVKFNPNNFAVNPDGTITVKEGEAARTVGRIPIFNAIGN 179 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 +S + + D + I + Y V++ +E++ +I ++++ +S+K++ Sbjct: 180 DSFSSIADSLYVPKDGVQVYRENNTDILQGYLENSNVDMSKEMTDMIVTQRAFELSSKVL 239 Query: 466 MFTDKM 471 D+M Sbjct: 240 STGDQM 245 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 33/133 (24%), Gaps = 12/133 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59 +L++F +++ N + +I NI N + Y + + + ++ Sbjct: 1 MLSLFWNSKSSMNAQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKD 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---------YNNSPTHYISKLRDS 110 + +S I E A D + Sbjct: 61 TELLIGTGTRLASTIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKID 120 Query: 111 LESYSKNLSEDIL 123 + + L Sbjct: 121 SNGDLCDDKGNYL 133 >gi|223889387|ref|ZP_03623973.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] gi|223885073|gb|EEF56177.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] Length = 282 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K I D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIEIETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|118581848|ref|YP_903098.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] gi|118504558|gb|ABL01041.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] Length = 245 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 32/130 (24%), Gaps = 6/130 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59 + + A + A ++ +I N+ N + + + + + V Q S Sbjct: 1 MNSGMYAALSGSIAAMKRMDTISNNLANVNTPGFKKDKMLFESMLAGTSNPPAVPQSSTA 60 Query: 60 KNMFDK---VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + K + + Q F + R S++ Sbjct: 61 DPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRAYTRQGNFRLSVDGTLV 120 Query: 117 NLSEDILGKT 126 + Sbjct: 121 TADGFPVLGQ 130 Score = 44.6 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 17/190 (8%), Positives = 52/190 (27%), Gaps = 1/190 (0%) Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + N +K+ + + + + + + +T Sbjct: 45 LAGTSNPPAVPQSSTADPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRA 104 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 R L G++ + V + D ++ + T +++++ Sbjct: 105 YTRQGNFRLSVDGTLVTADGFPVLGQDDVIRIQGGQVDVNSRGEVTVDGTPTGTMISIVD 164 Query: 403 YARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461 + + + Q I + V+ E+ +I+ + ++ Sbjct: 165 FPKPYNLTKVSSAQFVPANPQATPQAATGSIRQGQLEGSNVDTITEMVQMIETTRYFDAC 224 Query: 462 NKLIMFTDKM 471 ++I D M Sbjct: 225 QRVIKGFDDM 234 >gi|225619783|ref|YP_002721040.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae WA1] gi|225214602|gb|ACN83336.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae WA1] Length = 153 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43 M + ++ N + + + I NI N + + R + Sbjct: 1 MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIF 49 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN E+ +++ ++Y ++ +I M + L ++ Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152 >gi|291278935|ref|YP_003495770.1| flagellar basal-body rod protein FlgC [Deferribacter desulfuricans SSM1] gi|290753637|dbj|BAI80014.1| flagellar basal-body rod protein FlgC [Deferribacter desulfuricans SSM1] Length = 134 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISP-----EN 49 MS + A + + I N+ NA+ Y +R+ + Sbjct: 1 MSYFDILKIASTGLSAQRIRINVISSNLANANTTRTEDGTPYQKREVIFRTILDGELRGG 60 Query: 50 VTVVTQRS 57 V V Sbjct: 61 VRVEKVVR 68 Score = 37.7 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 4/26 (15%), Positives = 14/26 (53%) Query: 446 EELSFLIKVEQSYNISNKLIMFTDKM 471 EE+ +++ +SY + ++ ++ Sbjct: 99 EEMVNMLEASRSYEANVTVLNTAKQL 124 >gi|207092210|ref|ZP_03239997.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 605 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNTLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|320107042|ref|YP_004182632.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] gi|319925563|gb|ADV82638.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] Length = 262 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 50/213 (23%), Gaps = 1/213 (0%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G + + + ++ + + F D Sbjct: 51 TPGSAETTQTTSAGLQIGLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGT 110 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + S Q + L +V A + Sbjct: 111 LAYTRAGSFPPNGQGQLATVNGDLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLG 170 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 +A L N ++ + ++Y V++ EE Sbjct: 171 TIQLATFPNPGGLNSLGGNLF-QPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEE 229 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +++Y ++K+I D M + ++ Sbjct: 230 FVQMVMAQRAYESNSKVIHVADDMYSQINGLIR 262 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 49/248 (19%), Gaps = 22/248 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 ++ A + + +I N+ N+ + RR V +E Sbjct: 1 MIRALYTAASGMSAQQANLDTIANNLANSATSGFRRRRLQFEDMVYQNLVTPGSAETTQT 60 Query: 62 -------------------MFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSP 100 M + + Q F + + A + P Sbjct: 61 TSAGLQIGLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGTLAYTRAGSFP 120 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + +L T + + V Sbjct: 121 PNGQGQLATVNGDLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLGTIQLATFPNP 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 L L A + + + S + + V+ Y Sbjct: 181 GGLNSLGGNLFQPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEEFVQMVMAQRAY 240 Query: 221 TSDGTTLF 228 S+ + Sbjct: 241 ESNSKVIH 248 >gi|239628977|ref|ZP_04672008.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519123|gb|EEQ58989.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 4/51 (7%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + ++ E+ L++ ++++ ++++++ D+M + ++ ++ Sbjct: 206 SSVMTRTLEMSNADMSTEMVNLMQTQRAFQLNSRIVSTADQM-EEMINNLR 255 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 10/135 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52 + + A + N Q N+ N Y + Sbjct: 1 MNISYYTAVSAMNAFQQDLDVTANNMANVGTNGYKSMRSDFNDLLYTQMDMRPEAQVGHG 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V + A+ ++F A++ ++ + + Sbjct: 61 VKNNGPGTTFQQGIFRKTGRALDFAVSGKAFFAIQTSEDEEEPAYTRDGAFQISSTEDGN 120 Query: 113 SYSKNLSEDILGKTV 127 + + +L Sbjct: 121 YLTTSDGSYVLDWDG 135 >gi|172058672|ref|YP_001815132.1| hypothetical protein Exig_2667 [Exiguobacterium sibiricum 255-15] gi|171991193|gb|ACB62115.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 260 Score = 58.5 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 57/253 (22%), Gaps = 10/253 (3%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L T N S+ N + + + + L V Sbjct: 18 LDTTGHNLANANTNGYKRRDSQFNELLVRNLNNQPAGLTPGSLTTPAGLRLGVGGYVANE 77 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + G + + D V + Sbjct: 78 ATRFATGTFQNTGRKLDAALSNPHHFFGVIDADGVTKFTRDGNFELSPQANGQVLLTDDA 137 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 S + I + + VA I + L + Sbjct: 138 GRSVINQANEPITFPDDATSIELNKDGNITGVLNGERRVLARIGVADIPNHGELTDVGGG 197 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 N ++ T V++ E++ L +++++Y ++K + Sbjct: 198 LYTTAG----------QYQNATGNPLTVGTLETSNVDMATEMTNLTQIQRAYQFNSKALT 247 Query: 467 FTDKMLQTLLEGV 479 +D+M+ + Sbjct: 248 TSDQMMGIVTSLK 260 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 15/41 (36%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + + +Q + N+ NA+ Y RRD+ Sbjct: 3 SLYTSASTMAQLQKQLDTTGHNLANANTNGYKRRDSQFNEL 43 >gi|317009564|gb|ADU80144.1| flagellar hook protein FlgE [Helicobacter pylori India7] Length = 605 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N +++K+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K FL+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEMIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGAQDFFLNDKGEMIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|2494522|sp|P70911|FLGC_BORHE RecName: Full=Flagellar basal-body rod protein flgC gi|1621621|gb|AAB51474.1| flagellar rod protein FLgC [Borrelia hermsii] Length = 59 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M L + N A + I NI N + +Y R+ + Sbjct: 1 MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50 >gi|187918628|ref|YP_001884193.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] gi|119861476|gb|AAX17271.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] Length = 282 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I VN E+ +I V ++Y + K I D +L L+ Sbjct: 232 IETGALEGSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKLIN 277 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 16/211 (7%), Positives = 34/211 (16%), Gaps = 40/211 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RR--------- 39 ++ A + + I N+ N D Y RR Sbjct: 1 MVRGIYTAASGMMAQRHRLDVISNNLANIDLAGYKKDLSVHKAFPEMLIRRLNDDGLYKL 60 Query: 40 -------DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V + L + + E Sbjct: 61 PKGYLETAPVVGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------DEGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 E + + T ++ Sbjct: 111 VQTPEGERYTRNGSFTLGPEGMLVTKDGYPVIGEKGHIYLKDNNFKITDQGQIFHNTTFE 170 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 + L + + + N I + Sbjct: 171 ENPKRLVSEYENSWENYELLDNLKIVNFEKT 201 >gi|326792665|ref|YP_004310486.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326543429|gb|ADZ85288.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 271 Score = 58.5 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 9/219 (4%) Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 + + ++AL RD I Q +E L+G+ SE Sbjct: 53 NDPNAQTAPTVKQVGHGVRALANSRDYTNGILQETGNESDLALVGNGFFAIGQTDGSEVY 112 Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374 D ++ + + + + ++ Sbjct: 113 TRDGSFRFAMIPDEGSYALVTADGHPVLSTEGESIVV------GTEIPMDKLEIGQDGNI 166 Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF-NHIS 433 + + L N + E S + + I Sbjct: 167 YYLDETGLEMDVAQIRIVQFANRAGLEAVGDNL--YKETPASGEPLAEVDDDGLTKTTIR 224 Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 Y V + +E+ LI +++Y I++ I D ML Sbjct: 225 TGYLEGSNVQIAQEMVNLIIAQRAYEINSTAIKAADDML 263 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 10/122 (8%), Positives = 24/122 (19%), Gaps = 13/122 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54 ++ A + +I N+ N + Y + T Sbjct: 1 MIRALYTAASGMTAQQLNVDTISNNMANVNTAAYKKETTNFKSLLYTTMGEANDPNAQTA 60 Query: 55 ----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRD 109 Q + + + + A + S R Sbjct: 61 PTVKQVGHGVRALANSRDYTNGILQETGNESDLALVGNGFFAIGQTDGSEVYTRDGSFRF 120 Query: 110 SL 111 ++ Sbjct: 121 AM 122 >gi|320179222|gb|EFW54180.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905] Length = 54 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44 >gi|332524834|ref|ZP_08401025.1| flagellar basal body rod protein [Rubrivivax benzoatilyticus JA2] gi|332108134|gb|EGJ09358.1| flagellar basal body rod protein [Rubrivivax benzoatilyticus JA2] Length = 164 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQR 56 + + + N A + N+ N+ + + R+ + P VTV + Sbjct: 71 SASLSGLNAAQTRLDVAGHNVANSLTEGFRRQVAQPATAQPVGVTVSIAQ 120 >gi|330501139|ref|YP_004378008.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328915425|gb|AEB56256.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 11/185 (5%), Positives = 42/185 (22%), Gaps = 27/185 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 + + ++ + +++ N+ N + + + Sbjct: 1 MSSALWVSKTGLAAQDKAMSAVANNLANVNTNGFKSDRVVFEDLFYAIELQPGAQADEVN 60 Query: 45 ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P + + + + + + + F ++ + Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGAGFFQVE------APNGDIYY 114 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 +L+ + E N L + A + + D +I+ Sbjct: 115 TENGQLQLNAEGMIVNSQGLPLTPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQIT 174 Query: 162 NLRRF 166 + Sbjct: 175 LVNFT 179 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 42/181 (23%), Gaps = 2/181 (1%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 +V + + + F + D + + ++ Sbjct: 77 TQKVFTEGSIQTTGQPMDLAIIGAGFFQVEAPNGDIYYTENGQLQLNAEGMIVNSQGLPL 136 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + D+ + L N + E Sbjct: 137 TPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNPGGLEALGGNL--YRE 194 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + ++ + V + E + +I ++++Y + K++ M Sbjct: 195 TVASGEPVEGVPGADGLGNLKQGVLEGSNVQVVEAMVAMISIQRAYEANAKVLDAASGMQ 254 Query: 473 Q 473 Q Sbjct: 255 Q 255 >gi|116328474|ref|YP_798194.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331206|ref|YP_800924.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121218|gb|ABJ79261.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124895|gb|ABJ76166.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 287 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + Y V++ E+ +I+V +SY + K + D +L L+ Sbjct: 237 SILQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLIN 283 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 15/189 (7%), Positives = 26/189 (13%), Gaps = 28/189 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT-- 51 +L N + I N+ N D + R T+ P + V Sbjct: 1 MLRGMYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTVFKTFPELLLHRFDEDGVGKV 60 Query: 52 ----------------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 + + L + Sbjct: 61 PMGSFDTAPVVGKLGLGGEVNEVYTRFEQGAVKKTENPFDI-MLQDRPGNEHPAFFSVMT 119 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 Y L EV + Sbjct: 120 NRGERLSRSGAFVMDTNGYLVTPQGFPLMGENGPIRVARGNFLIKENGEVWINGEIGNDP 179 Query: 156 IELEISNLR 164 + Sbjct: 180 RNGTSLDKN 188 >gi|217032455|ref|ZP_03437948.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298736140|ref|YP_003728665.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|216945863|gb|EEC24483.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298355329|emb|CBI66201.1| flagellar hook protein FlgE [Helicobacter pylori B8] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNKPIDAITNRKLNVSIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|205375363|ref|ZP_03228153.1| flagellar hook-basal body complex protein [Bacillus coahuilensis m4-4] Length = 279 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 74/264 (28%), Gaps = 9/264 (3%) Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 L N + + + + + N + + + L + + Sbjct: 17 QHLDVISHNVANVDTNGYKAQNARFSEMLVQQFDNQKNPANEIGRLTPNGLRLGVGAGIG 76 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 Q + A G + + ++ + + Sbjct: 77 QIQMNTSQGALQSTGRSLDFILQNQTHYFKVLNQSGGQSEVNYSRSGAFYLSPLNDDTAM 136 Query: 345 RSNPSF--LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 ++ + + + + + + + + I V I L Sbjct: 137 LTDANGNPILNSDDQPITIPGDATSFYPDQNGVLVVETPRGQERIELGVVSIQKPQFLES 196 Query: 403 YARNSIG------WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 N +G L+ + + + + + + V+L +EL+ +I V++ Sbjct: 197 KGGNLVGLPTNFNQLDVDANTILTDLNGANRAEISVKQGFIEKSNVDLSKELTDMINVQR 256 Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480 SY + I D+M+ L+ G++ Sbjct: 257 SYQFQARTISMADQMMG-LVNGIR 279 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 15/44 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + + N A N Q I N+ N D Y ++ + Sbjct: 1 MNRIMNVATNTMAQLQQHLDVISHNVANVDTNGYKAQNARFSEM 44 >gi|308183061|ref|YP_003927188.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065246|gb|ADO07138.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 43/410 (10%), Positives = 123/410 (30%), Gaps = 18/410 (4%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNVSIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLE-----IANP 315 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 SE ++ D + +DG L + + RD K+ Y+ + D ++ S Sbjct: 316 SETPITFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQS 375 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 + R + ++ + + + + + +S Sbjct: 376 EYYMTNSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPM 435 Query: 322 GIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + NKL + ++ + S + L + ++ + + + Sbjct: 436 TLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFS 495 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFN 430 + + + + L + N E + + + ++ F Sbjct: 496 NGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFG 555 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 556 KIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|188527733|ref|YP_001910420.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143973|gb|ACD48390.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 38/179 (21%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKNGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|220924578|ref|YP_002499880.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] gi|219949185|gb|ACL59577.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] Length = 263 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 8/220 (3%) Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 + ++ ++ A L + V ++ + + I G L Sbjct: 51 AGSATSDQGNQLPAGLALGSGVKTTSTARVMSQGTLSSTEKTYDIAIRGEGFFQITLPDG 110 Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380 D I Y NPS + + A P Sbjct: 111 RTAYTRDGSFDLDSQGQIVTRDGYLINPSITVPNNATGVTISASGMVQATVPGQTAP--- 167 Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440 +N +A V L N E S F ++ +SY Sbjct: 168 ---QNLGQIQLARFVNKVGLESIGDNLFT--ETLASGPAITGNPGAEGFGNLQQSYLEEA 222 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN E+S LI +++Y +++K++ D+ML T + + Sbjct: 223 NVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTSQMFR 262 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 8/41 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A I NI N Y R+ Sbjct: 3 ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDL 43 >gi|160939652|ref|ZP_02087000.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] gi|158437443|gb|EDP15207.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] Length = 246 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 14/175 (8%), Positives = 32/175 (18%), Gaps = 22/175 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 + + F A + + NI N Y + + T Sbjct: 1 MFSGFYTAASGMLMNQRSLNMAANNIANVKTSGYKPKRLVKTTFDQQLVREMNGRTEGLG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + T+ E + + N Sbjct: 61 QGSTISVGTREMTTHGQGPIEDTGKTYDLAING-------DGFFVIQGENGQYLTRNGHF 113 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 E L + + + A +I++ + + Sbjct: 114 TRDDEGNLMLPGVGQLMGDGGPVYVDEEGFRVGADGIIYDNEDGALDQIQIVVPD 168 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 46/184 (25%), Gaps = 10/184 (5%) Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + + +A + R + L G Sbjct: 66 SVGTREMTTHGQGPIEDTGKTYDLAINGDGFFVIQGENGQYLTRNGHFTRDDEGNLMLPG 125 Query: 356 SVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + G+ + + + N LE+ N Sbjct: 126 VGQLMGDGGPVYVDEEGFRVGADGIIYDNEDGALDQIQIVVPDNYDSLEFYDN-----GT 180 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + V+ + + GVNL E++ ++V++++ K + D+M Q Sbjct: 181 YGAGAGVEL---SQVYPTVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQMNQ 237 Query: 474 TLLE 477 Sbjct: 238 KTAN 241 >gi|108563315|ref|YP_627631.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|107837088|gb|ABF84957.1| flagellar hook protein [Helicobacter pylori HPAG1] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|317182208|dbj|BAJ59992.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N +++K+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K FL+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 37/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDL 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLFKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNANEMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|317012717|gb|ADU83325.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 57.0 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDL 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|308184693|ref|YP_003928826.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060613|gb|ADO02509.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|297570292|ref|YP_003691636.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] gi|296926207|gb|ADH87017.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] Length = 244 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 54/212 (25%), Gaps = 8/212 (3%) Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN-KLCQGI 334 + + ++ +L + +E+ + + L Sbjct: 28 NNLANVDTAGYKKDAVSFWEMLYQANAERQRVGKALRVHTDHQQGHVDPTGNPLDLAIQG 87 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + L + D D N D + Sbjct: 88 EGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGDGGPIVVDGNNFAVERDGRVMV 147 Query: 395 NTNV-------TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + + + R + M + + + + + VN EE Sbjct: 148 DGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMPLEAMNFQVRQGFLEKSNVNSVEE 207 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +I +++SY K+I D M + + V Sbjct: 208 MTTMIDLQRSYEAQQKMIQAIDDMDEQAISRV 239 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/197 (6%), Positives = 38/197 (19%), Gaps = 2/197 (1%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 ++ + N+ N D Y + R Sbjct: 16 MLAQERRLDQVANNLANVDTAGYKKDAVSFWEMLYQANAE--RQRVGKALRVHTDHQQGH 73 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + E + + ++ + Sbjct: 74 VDPTGNPLDLAIQGEGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGDGGPIVVD 133 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 V ++ + +++L + E + +A +F + Sbjct: 134 GNNFAVERDGRVMVDGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMPLEAMNFQVR 193 Query: 194 RDVLLQKISEIIGISTI 210 + L + + T Sbjct: 194 QGFLEKSNVNSVEEMTT 210 >gi|317177697|dbj|BAJ55486.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N +++K+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K FL+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKAPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|254779511|ref|YP_003057617.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|254001423|emb|CAX29418.1| Flagellar hook protein FlgE [Helicobacter pylori B38] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 IFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLPYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|92116936|ref|YP_576665.1| flagellar basal body rod protein FlgG [Nitrobacter hamburgensis X14] gi|91799830|gb|ABE62205.1| Flagellar basal-body rod FlgG [Nitrobacter hamburgensis X14] Length = 262 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 49/181 (27%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S + + I+ D T ++ Q R + Sbjct: 82 SQGTLSQTGNDLDIAIRGEGFFKIQMPDGTYQYTRDGTFQMDNQGRIVNAQGNPVQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + + + E S Sbjct: 142 IPQNSAGITINAQGQVSVTLPGQTTPTVLGQIGLTRFVNKAGLQPVGDNNFTETPASGPP 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + + +S V + E+S LI +++Y ++ K+I D+MLQ+ Sbjct: 202 QDGIANIDGYGDMQQSSLEQANVEVVSEISDLIAAQRAYEMNAKVISAADQMLQSASALF 261 Query: 480 K 480 + Sbjct: 262 R 262 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 42/234 (17%), Gaps = 38/234 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44 A I NI N Y ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASDQGTIL 62 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGIDLGGGVKTVGTPRL---MSQGTLSQTGNDLDIAIRGEGFFKIQ------MPDGTYQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + N + + ++A + + + Sbjct: 114 YTRDGTFQMDNQGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQI 173 Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + L + N + D +D + Q E + + Sbjct: 174 GLTRFVNKAGLQPVGDNNFTETPASGPPQDGIANIDGYGDMQQSSLEQANVEVV 227 >gi|210135099|ref|YP_002301538.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133067|gb|ACJ08058.1| flagellar hook protein [Helicobacter pylori P12] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|315586853|gb|ADU41234.1| flagellar hook protein [Helicobacter pylori 35A] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + + Y + + ++ N +++K+ + +++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179 Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + LS ++ + K K FL+ + ++++ I+ + ++N+ Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239 Query: 218 VVYTSD 223 + ++ Sbjct: 240 IDAITN 245 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|15645524|ref|NP_207700.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2314044|gb|AAD07954.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 605 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|89095666|ref|ZP_01168560.1| FlhP [Bacillus sp. NRRL B-14911] gi|89089412|gb|EAR68519.1| FlhP [Bacillus sp. NRRL B-14911] Length = 274 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 20/281 (7%) Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259 ++ + + I++ N D Y T + + + + ++ N + + Sbjct: 14 QLQKQMDITSHNMANVDTTGYKRREATFTDLLVQQFANQPNSADENRLTPNGLRQGTGAM 73 Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + + +G IK + D+ + + GS + Sbjct: 74 LAQSQIVMAQGSIKTTDRQLDTAFTKENQLYKVLVQTETGSEVQYTRDGAFYLTPVSDTE 133 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 + + N + I +N Q + + G + Sbjct: 134 SMLVTSAGNAVLDENDNPIYINGQPGEFAITENGILTAKDSTGQEQEFSLGIVRVNKPQF 193 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 + AG + L + G + + Sbjct: 194 LQQQGGNLLALAAGADGIDVLTDLTGALRGEAG-------------------VQQRALEQ 234 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+Q+E++ LI V+++Y ++ I D+M+ L+ G++ Sbjct: 235 SNVNMQKEMTDLITVQRAYQFQSRAISMADQMMG-LVNGIR 274 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 15/44 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + + A N +Q N+ N D Y RR+ T Sbjct: 1 MSRMMITATNTLAQLQKQMDITSHNMANVDTTGYKRREATFTDL 44 >gi|83944162|ref|ZP_00956618.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] gi|83845029|gb|EAP82910.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] Length = 261 Score = 58.1 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 25/148 (16%), Gaps = 34/148 (22%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI NA+ + Sbjct: 3 ALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTAR 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V N L + + + + + + Sbjct: 63 PVGTDIGLGVQAAGVIRHN---IQGGLIQTENQLDLAIEGRGYFTV------NRPDGTQA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128 + S E L+ + +I Sbjct: 114 FTRDGNFQLSAEGQLVTLNGYEVEPAII 141 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 A L N + S ++ + Y VN+ Sbjct: 169 ELGQLNFATFLNEAGLKPVGDNLMEQ--TAASGEPVQNVPGTPGVGITRQGYLEQSNVNI 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++++ LI +++Y +++K I D+++ T + Sbjct: 227 IQQITDLISAQRAYEMNSKAIETADQIMTTTNQIK 261 >gi|294084436|ref|YP_003551194.1| flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664009|gb|ADE39110.1| Flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 269 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 6/177 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRSENKNMF 63 ++ A+++ I NI NA + R Q + Sbjct: 2 LAIIRSGIAAANKEIGVISNNIANASTNGFKRSSAQFQDIYGIAGEKRAAAQVGKGTVFD 61 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS---PTHYISKLRDSLESYSKNLSE 120 + A E M N +R + N Sbjct: 62 ASRRNHAQGAFKTSGSELDLAVAGEGMFIVAPPNAGNELRYTRDGSMRLDENGFIVNNEG 121 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 L ++ +V I ++ + +T N A+ Sbjct: 122 HFLIGLDGAPLRLPLRRNPAEDGDVAAEELLTSVSIGVDGQIKATYAGAMTRGNGAV 178 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 5/174 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 G+ + G + + L + + NP + + SV Sbjct: 96 AGNELRYTRDGSMRLDENGFIVNNEGHFLIGLDGAPLRLPLRRNPAEDGDVAAEELLTSV 155 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 S + + N +A L ++ ++ Sbjct: 156 SIGVDGQ---IKATYAGAMTRGNGAVINRGTIALARFQNEADLTSKGNGQ--FIMNAKTG 210 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + SQ F + V + +EL+ +I+ +Q+Y+ S++++ + Sbjct: 211 LPAVGAASQGNFGDVLSGNLEVSNVKINDELTSMIRAQQAYSASSRMLQADSDI 264 >gi|217034408|ref|ZP_03439822.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] gi|216943139|gb|EEC22611.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 15/232 (6%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317 S++ S+ + +++ +V + D ++ P Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKAPINDPTWEIVGFDSATHKMKSAPMT 436 Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377 G K SE + + L + ++ + + Sbjct: 437 LDFKGNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLA 493 Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428 + + + + + L + N E + + + ++ Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 553 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 F I Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|83955138|ref|ZP_00963794.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] gi|83840467|gb|EAP79640.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] Length = 261 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 25/148 (16%), Gaps = 34/148 (22%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 A I NI NA+ + Sbjct: 3 ALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTAR 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V N L + + + + + + Sbjct: 63 PVGTDIGLGVQAAGVIRHN---IQGGLIQTENQLDLAIEGRGYFTV------NRPDGTQA 113 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128 + S E L+ + +I Sbjct: 114 FTRDGNFQLSAEGQLVTLNGYEVEPAII 141 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 A L N + S ++ + Y VN+ Sbjct: 169 ELGQLNFATFLNEAGLKPVGDNLMEQ--TAASGEPVQNVPGTPGVGITRQGYLEQSNVNI 226 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++++ LI +++Y +++K I D+++ T + Sbjct: 227 IQQITDLISAQRAYEMNSKAIETADQIMTTTNQIK 261 >gi|24214555|ref|NP_712036.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45657887|ref|YP_001973.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195518|gb|AAN49054.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45601128|gb|AAS70610.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 287 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Y V++ E+ +I+V +SY + K + D +L L+ Sbjct: 237 SVLQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLIN 283 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 14/189 (7%), Positives = 28/189 (14%), Gaps = 28/189 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT-- 51 +L N + I N+ N D + R T+ P + V Sbjct: 1 MLRGIYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTIFKTFPELLLHRFDEDGVGKV 60 Query: 52 ----------------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 + + L + + Sbjct: 61 PMGSFDTAPVIGKLGLGGEVNEVYTRFEQGAVKKTENPFDL-MLQDKPGSEHPAFFSVMT 119 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + L EV + Sbjct: 120 NRGERLSRSGAFVMDTNGFLVTPQGFPLLGENGPIRVARGNFLIKENGEVWINGEIGNDP 179 Query: 156 IELEISNLR 164 + + Sbjct: 180 VNGTSIDKN 188 >gi|297380105|gb|ADI34992.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|308062226|gb|ADO04114.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] gi|308063738|gb|ADO05625.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] gi|317178740|dbj|BAJ56528.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|148266117|ref|YP_001232823.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] gi|146399617|gb|ABQ28250.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] Length = 244 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 27/134 (20%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59 + + A + A Q+ I N+ NA+ + N T + N Sbjct: 1 MNSGLYAALSGSLAAMQRLEVISNNLANANTPGFKGDRLQFESVLANTKNPTLTAGNLTD 60 Query: 60 ------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + F + + Q + + + Sbjct: 61 LPVFSGEKFFTNY---SAGPLKQTGNTLDVALDGDGFFVVNTPQGKAYTRQGSFQRDASG 117 Query: 114 YSKNLSEDILGKTV 127 + Sbjct: 118 KLVTGDGYEVQGRG 131 Score = 38.9 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V + + + VN+ E++ +I+ + ++ K+I D + Sbjct: 180 ADPQVAPQAVTTASVKQGFLEDSNVNVVTEMARMIETSRYFDSCQKVIRSYDDV 233 >gi|114799186|ref|YP_758987.1| flagellar basal body rod protein FlgG [Hyphomonas neptunium ATCC 15444] gi|114739360|gb|ABI77485.1| flagellar basal-body rod protein FlgG [Hyphomonas neptunium ATCC 15444] Length = 261 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 + + L N + E S + + + + Y V Sbjct: 167 GQAIGSISLVRFVNEKGLEAMGDNM--FRETEASGPANRLIPGTEGMGFLRQGYIEDSAV 224 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++ +E++ LI+ ++ Y +++K+I +D+ML Sbjct: 225 DVVKEIADLIEAQRGYELNSKVITASDEML 254 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 39/180 (21%), Gaps = 28/180 (15%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + I NI N Y R + Sbjct: 3 SLQIAASGMAAQQMRVEVISNNIANMSTTAYRPRTAEFSDLMYQQYLTPGTITSQVGTVV 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P + + + + ++ L + + F + Sbjct: 63 PSGIQLGSGVRPTTVSMDLTQGTLRETQAELDIAIDGNGFLEV------TLPSGEPAFTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 KL S + L ++ + + + V + + + IS + Sbjct: 117 DGKLSRSPDGEIVTSDGFPLADGIVIPEDARRISISRDGEVVAYFDNETEGQAIGSISLV 176 >gi|332673746|gb|AEE70563.1| flagellar hook [Helicobacter pylori 83] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|254994393|ref|ZP_05276583.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064] Length = 62 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Q IS S V+L E L+ + + + K+I D +++ ++ Sbjct: 1 AVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNL 60 Query: 479 VK 480 ++ Sbjct: 61 IQ 62 >gi|162147445|ref|YP_001601906.1| flagellar hook protein flgE [Gluconacetobacter diazotrophicus PAl 5] gi|209545555|ref|YP_002277784.1| hypothetical protein Gdia_3444 [Gluconacetobacter diazotrophicus PAl 5] gi|161786022|emb|CAP55604.1| putative flagellar hook protein flgE [Gluconacetobacter diazotrophicus PAl 5] gi|209533232|gb|ACI53169.1| protein of unknown function DUF1078 domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 569 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 42/433 (9%), Positives = 103/433 (23%), Gaps = 11/433 (2%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59 MS+ + A + + S F ++ NI N+ Y T + S + Sbjct: 1 MSVFNALSTAVSGIDAQSTAFTNLSNNIANSQTVGYKAESTSFQDFVAGSLTSSTASSDI 60 Query: 60 ---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-----L 111 D + + T ++ ++ Sbjct: 61 SDSVAAVDVQNVGAQGTASASTDTLAMAINGNGLFDVSEETGQATSGTTQFENTQYYTRN 120 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 + +N ++ T + + + + +I E + + + + T Sbjct: 121 GEFYENNEGYLVNTTGYYLDGYMADSNGSLGNTLTQINVANVSFRPTETTTITQSAAVGT 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231 + +D+ + S + D K++ S+ + Y + GT + Sbjct: 181 IPSDSTSYTAQSYSTSPVTTYDADGNASKVALTWTQSSTNPLVWTVSAYDAGGTGKVASN 240 Query: 232 PRDINFEKMNS--YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ F+ + + ++ + IR + I Sbjct: 241 SFEVTFDSSGDLASVTGTSDGSSYTSSTSSGASVDPTITLTSNGVAQTIRLDLGTIGGTS 300 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 MA + + S + + + T + + S Sbjct: 301 GTTMAASSGTASASGVTSLSASGTALSMATTTLGTTTGSGQSYMTAPTDVNSVPVSAVWS 360 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 S L + + + N TL + G Sbjct: 361 QTSANPSTWSVSLVDPYGGSDVSSDTYSVVFNSNGTAQTVTDTTTGATTTLSSLSATVNG 420 Query: 410 WLEKNRSDSHDLH 422 + + L Sbjct: 421 KAYTLDASAASLS 433 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 13/126 (10%), Positives = 38/126 (30%), Gaps = 2/126 (1%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 + + ++ + + + ++ L + Sbjct: 445 SDSVTSGTYEGAEIESDGSVMAEFSNGDTQLIGKVALSTFANVDGLNAVTGQ--AYTATA 502 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 S + + Y + +L +LS LI +++Y+ + K++ D +LQ Sbjct: 503 ASGAAQTGTVGSNGTGTLEVGYVESSTTDLTSDLSALIVDQEAYSANTKVVTTADDLLQA 562 Query: 475 LLEGVK 480 + + Sbjct: 563 TISMKQ 568 >gi|138894738|ref|YP_001125191.1| flagellar basal body rod protein FlgC [Geobacillus thermodenitrificans NG80-2] gi|196247641|ref|ZP_03146343.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16] gi|134266251|gb|ABO66446.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] gi|196212425|gb|EDY07182.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16] Length = 150 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 10/57 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISP 47 MS+ N + + + I NI N D Y R+ + Sbjct: 1 MSMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRG 57 >gi|307637597|gb|ADN80047.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996190|gb|ADZ51595.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997786|gb|ADZ49994.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 AFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|317180242|dbj|BAJ58028.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKAPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|226321475|ref|ZP_03797002.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] gi|226233271|gb|EEH32023.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] Length = 282 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ S + I VN +E+ +I++ ++Y + K + D Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTLQTED 269 Query: 470 KMLQTLLE 477 +L L+ Sbjct: 270 SLLGKLIN 277 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42 ++ A + ++ ++ N+ N D Y + R Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 43 ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 +P + T L + + + Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + E S + Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143 >gi|15611911|ref|NP_223562.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|4155414|gb|AAD06422.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori J99] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 AFSLSGGIADKLGLNANQMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|317014317|gb|ADU81753.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|261838284|gb|ACX98050.1| flagellar hook protein [Helicobacter pylori 51] Length = 605 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S+ NI N + Y D + +++ Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98 D+ S + + + Sbjct: 60 NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + Y + + ++ N +++K+ + ++ Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%) Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281 ++G L + + RD K+ Y+ + D ++ S + R + Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 ++ + + + + + +S + NKL + ++ + Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455 Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 S + L + ++ + + + + + + + Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515 Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450 L + N E + + + ++ F I Y T VN L+ Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575 Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++ Y+++ + D M++ + K Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|254476330|ref|ZP_05089716.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11] gi|214030573|gb|EEB71408.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11] Length = 130 Score = 57.7 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS A + + + S + + NI NAD Y R+ Sbjct: 1 MSEFAKSLSISASALQAQSTRLRHVSENISNADTPGYRRKTVPFEAV 47 >gi|302872713|ref|YP_003841349.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575572|gb|ADL43363.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 255 Score = 57.7 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 6/143 (4%), Positives = 24/143 (16%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + + R Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVNTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F A++ + + Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIE--VPGNQGAQQILYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + + L + Sbjct: 119 NGAFTLNSQGELVTLDGFYVLGQ 141 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + Y VN +E+ +I V ++Y + K D+ LQ + Sbjct: 203 GRIVQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQDETLQKAVS 250 >gi|159045788|ref|YP_001534582.1| flagellar basal body rod protein FlgC [Dinoroseobacter shibae DFL 12] gi|157913548|gb|ABV94981.1| flagellar basal-body rod protein FlgC [Dinoroseobacter shibae DFL 12] Length = 130 Score = 57.7 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 LL + + +Q+ + +NI N D Y R+ Sbjct: 4 LLKSMTVSASGLMAQAQRLNVVSQNIANVDTPGYQRKQAEFQQM 47 >gi|326404069|ref|YP_004284151.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] gi|325050931|dbj|BAJ81269.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] Length = 260 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 ++ + + + + + + N + ++ G Sbjct: 87 QQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGTFGLSPNGTIVTADGYVVQPGIQIPTNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 NV A ++ + + +A + L N +L+ S + Sbjct: 147 TNVTINASGQVQVSLPGQTAPQTVGQLQLAVFPNDAGLAAQGGNL--FLQTAASGNPVTG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 S F + + + VN+ E++ LI +++Y+++++++ T++ML TL + Sbjct: 205 APSAPGFGTVMQGFVENSNVNVVSEVTDLITAQRAYDMNSQVVTATNQMLSTLTQL 260 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 16/260 (6%), Positives = 44/260 (16%), Gaps = 29/260 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46 + A I NI N Y + Sbjct: 3 ALDIAATGMQAQQTNVEVISNNIANMTTTGYKAQRVAFQDLLYQDLRRAGSNSSDAGTIV 62 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99 V ++ L ++ + + + + + + Sbjct: 63 PSGTQIGLGVKTAAIYRIDQQ---GNLQQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGT 119 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + + + Y I Q + + + Sbjct: 120 FGLSPNGTIVTADGYVVQPGIQIPTNATNVTINASGQVQVSLPGQTAPQTVGQLQLAVFP 179 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + A + + + S + +S + Sbjct: 180 NDAGLAAQGGNLFLQTAASGNPVTGAPSAPGFGTVMQGFVENSNVNVVSEVTDLITAQRA 239 Query: 220 YTSDGTTLFETVPRDINFEK 239 Y + + T + Sbjct: 240 YDMNSQVVTATNQMLSTLTQ 259 >gi|99082800|ref|YP_614954.1| flagellar basal body rod protein FlgG [Ruegeria sp. TM1040] gi|99039080|gb|ABF65692.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040] Length = 261 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 ++G L N + + S + + + Y V+ E++ Sbjct: 174 TLSGFTNPKGLEAMGGNL--FKQTEASGQPNTTEPGADGIGFLRQKYLEDSSVDAVREIT 231 Query: 450 FLIKVEQSYNISNKLIMFTDKML 472 LI+ ++ Y +++K+I D+M+ Sbjct: 232 ELIEAQRGYEMNSKVISAVDQMM 254 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46 A + + +I N+ N + Y R Sbjct: 3 ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62 Query: 47 PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 P V V + + L + + + + + Sbjct: 63 PTGVQVGLGVRPAAVSVYLNQGALSQTGNELDLAIDGNGYFEV------TLPSGETAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDIL 123 + S E + Sbjct: 117 DGSFKRSAEGLIVTNDGYPV 136 >gi|261420740|ref|YP_003254422.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768410|ref|YP_004133911.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377197|gb|ACX79940.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113276|gb|ADU95768.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 273 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V+L EE+ L+ ++Y ++ + I +++ML L+ G++ Sbjct: 223 SVKQGALEQSNVDLGEEMVGLMATSRAYQLNARAISISEQMLG-LINGMR 271 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +L A N N ++ +I NI N++ + RR+ Sbjct: 1 MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLT 46 >gi|163738064|ref|ZP_02145480.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis BS107] gi|163742540|ref|ZP_02149926.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis 2.10] gi|161384125|gb|EDQ08508.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis 2.10] gi|161388680|gb|EDQ13033.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis BS107] Length = 130 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS + + + + + + + NI NAD Y R+ Sbjct: 1 MSEFSKSLSVSASALKAQASRLRHVSENISNADTPGYRRKTVPFEAV 47 Score = 39.2 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 +G + +RSD + S + + + V+L E++ + ++SY + K+ Sbjct: 59 VGPVRLDRSDLEQVFDPSHPLAD--ESGHYEGSNVDLMIEIADAREAQRSYEANLKMFEQ 116 Query: 468 TDKMLQTLLEGVK 480 +M +L++ ++ Sbjct: 117 GRQMSSSLMDLLR 129 >gi|255099439|ref|ZP_05328416.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-63q42] Length = 253 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 N + L + + N NK + + Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + ++ + + + I + Y V+LQEE LI ++++ +++K Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236 Query: 465 IMFTDKMLQ 473 I D+M Q Sbjct: 237 IKTADEMWQ 245 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 41/171 (23%), Gaps = 12/171 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + +F ++ + + I NI N+D+ Y + + + + Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + A ++ + + Sbjct: 49 LNRPSYPTNGKDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + + + + + I + +S + Sbjct: 109 YTRNGGFNVDALGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159 >gi|254973936|ref|ZP_05270408.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-66c26] gi|255091322|ref|ZP_05320800.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP 107932] gi|255312980|ref|ZP_05354563.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-76w55] gi|255515739|ref|ZP_05383415.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-97b34] gi|255648833|ref|ZP_05395735.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-37x79] gi|260682050|ref|YP_003213335.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196] gi|260685648|ref|YP_003216781.1| flagellar basal body rod protein FlgG [Clostridium difficile R20291] gi|260208213|emb|CBA60571.1| putative flagellar basal-body rod protein [Clostridium difficile CD196] gi|260211664|emb|CBE01933.1| putative flagellar basal-body rod protein [Clostridium difficile R20291] Length = 253 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 N + L + + N NK + + Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + ++ + + + I + Y V+LQEE LI ++++ +++K Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236 Query: 465 IMFTDKMLQ 473 I D+M Q Sbjct: 237 IKTADEMWQ 245 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 42/171 (24%), Gaps = 12/171 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + +F ++ + + I NI N+D+ Y + + + + Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + A + ++ + + Sbjct: 49 LNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + + + + + I + +S + Sbjct: 109 YTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159 >gi|297531534|ref|YP_003672809.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254786|gb|ADI28232.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 273 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + V+L EE+ L+ ++Y ++ + I +++ML L+ G++ Sbjct: 223 SVKQGALEQSNVDLGEEMVGLMATSRAYQLNARAISISEQMLG-LINGMR 271 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +L A N N ++ +I NI N++ + RR+ Sbjct: 1 MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLT 46 >gi|254466614|ref|ZP_05080025.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium Y4I] gi|206687522|gb|EDZ48004.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium Y4I] Length = 130 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS + + + + + + NI NAD Y R+ Sbjct: 1 MSEFSKALSVTASGLKAQAARLRHVSENISNADTPGYRRKAVPFESV 47 Score = 36.9 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 G + +RS+ ++ S + + + V+L E++ + ++SY + K+ Sbjct: 59 TGRVTLDRSELEKVYDPSHPLAD--ESGHFEGSNVDLMIEIADAREAQRSYEANLKMFEQ 116 Query: 468 TDKMLQTLLEGVK 480 T M +L+E ++ Sbjct: 117 TRSMSASLMELLR 129 >gi|208434813|ref|YP_002266479.1| flagellar hook protein [Helicobacter pylori G27] gi|208432742|gb|ACI27613.1| flagellar hook protein [Helicobacter pylori G27] Length = 605 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 29/181 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44 + A + S+ NI N + Y + +T Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVTN 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN------- 97 VT N D + + + + + N Sbjct: 61 DRNYGVTGSGNVLSN---KDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKK 117 Query: 98 -NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 ++ + Y + + ++ N +++K+ + + Sbjct: 118 QDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPL 177 Query: 157 E 157 + Sbjct: 178 Q 178 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%) Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141 + +D ++++ ++L + + I + + + ++ Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262 Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 ++ + +L++ L E T ++ + L+ + I Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261 + + + + ++V I + + + + Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380 Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N K Q + I + D ++ P Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G K SE + + L + ++ + + + + Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432 + + + L + N E + + + ++ F I Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y T VN L+ LI +++ Y+++ + D M++ + K Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 >gi|307718427|ref|YP_003873959.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] gi|306532152|gb|ADN01686.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] Length = 280 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + VN E+ +I+V ++Y + K I D +L L+ Sbjct: 230 VRQGFLEGSNVNPVTEMVQMIEVNRAYEANQKTIETQDTLLGRLIN 275 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + + + + +I N+ N D Y R + PE + R N Sbjct: 1 MIRGYYIGASGMASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPE----LLIRRMNDRY 56 Query: 63 F 63 F Sbjct: 57 F 57 >gi|168186142|ref|ZP_02620777.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295678|gb|EDS77811.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 259 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 23/257 (8%), Positives = 62/257 (24%), Gaps = 22/257 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54 ++ A + N Q I N+ NA Y + +D M + V Sbjct: 1 MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDDLVGKSFKDVMMHNYDKVVRGKH 60 Query: 55 QRSENKNM-----FDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 +++ + D+ A+ F + + Sbjct: 61 VKNDIGMLSMGCKLDQTYTNFTQGALQSTDKKTDFALQGKGFFTVSRGGRNFYTRDGHFH 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 Y N + D + + + + + + E+ + N + Sbjct: 121 VDRGGYLVNSTGDKVIGKNLRTG---ATEPINVMQGGKPSKISCNDSGEMFVGNDLAYKV 177 Query: 169 ELTVVNDAIKFKT-----ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 ++ N+ + + + + I + V + + Sbjct: 178 QVVDFNNYEALSKEGDNLYTGGNPNVIENTMVKQGYLEKSNINVMEAVSDMMMSMRNFES 237 Query: 224 GTTLFETVPRDINFEKM 240 L +++ + Sbjct: 238 NQKLVQSLDETLGKTVN 254 >gi|58039417|ref|YP_191381.1| flagellar basal body rod protein FlgG [Gluconobacter oxydans 621H] gi|58001831|gb|AAW60725.1| Flagellar basal-body rod protein FlgG [Gluconobacter oxydans 621H] Length = 263 Score = 57.3 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 2/176 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 E+ + + + + + + ++ N + +L Sbjct: 87 EQTSNSLDLAVQGRGYFQVQLPSGQLAYTRDGTFSMDNNGSLVTADGYLISPTITIPNNA 146 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 ++ + + + L +N S + Sbjct: 147 QSISVDQSGQVSVQIAGQNNTTLVGQLQLGIFTNENGLAAMGQNLFTQ--TTASGDAMMG 204 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 V + I + Y VN+ E++ LI +++Y +++K+I +D M++T+ Sbjct: 205 NPEAVGYGSIMQGYVENSNVNVVTEITDLITAQRAYEMNSKVITASDDMMKTVTNL 260 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/269 (6%), Positives = 56/269 (20%), Gaps = 9/269 (3%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65 + A +I NI N Y R R + D Sbjct: 3 ALDIAGTGMQAQQTNVETISNNIANMSTTGYKRSRAEFQDLIY----QNIRRVGASSSDT 58 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + A + + + + +NS ++ + + Sbjct: 59 GTTIPAGAQVGLGVKTAAIYRINDQGSLEQTSNSL--DLAVQGRGYFQVQLPSGQLAYTR 116 Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185 + + + + + + + ++ N+ Sbjct: 117 DGTFSMDNNGSLVTADGYLISPTITIPNNAQSISVDQSGQVSVQIAGQNNTTLVGQL--- 173 Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245 F ++ + + + G+ + V + Sbjct: 174 QLGIFTNENGLAAMGQNLFTQTTASGDAMMGNPEAVGYGSIMQGYVENSNVNVVTEITDL 233 Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKA 274 + ++ V++++ + Sbjct: 234 ITAQRAYEMNSKVITASDDMMKTVTNLGG 262 >gi|160878401|ref|YP_001557369.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] gi|160427067|gb|ABX40630.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] Length = 257 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 34/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ N ++ I N+ N+ Y + Sbjct: 1 MVRGLYTGWTGMENEQKRLDIISNNLANSATVGYKKEGVTNQSFDDVLTLKIRDESENFT 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V + + L + F ++ + D + Sbjct: 61 DKRIGKMTLGVKLGEV---YTDYTQGSLRETGNTFDFAIEGSGFFKME--VLDKDGNSKE 115 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + E Y +++ + L +Q +++ V ++ + + + Sbjct: 116 RYTRAGQFLMDKEGYVVDVNGNHLMSE-----GGYLQVPTDASQIVIDLQGNVFAD-GAQ 169 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + L E D D + Q +E ++ + N + + Sbjct: 170 VDKLVVTDFENYDYLKKFGESMYEAVDGARVKDTAAGIRQGYTEQSNVNVVSEMVNMIAI 229 Query: 220 Y 220 Sbjct: 230 T 230 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + Y+ VN+ E+ +I + ++Y + K++ D L+ + Sbjct: 207 IRQGYTEQSNVNVVSEMVNMIAITRAYEANQKVLQSIDGTLELAANSI 254 >gi|297543693|ref|YP_003675995.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841468|gb|ADH59984.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 251 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 65/249 (26%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVV 53 +L A + ++ + N+ N + Y R +T+ +NV Sbjct: 1 MLRGLYAASSGMVTQTKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNVPPD 60 Query: 54 T----------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + N + + + F + + S Sbjct: 61 GKIGKMDYGILIDTFHTNFEEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + E Y + + D + + + N + + V ++R + Sbjct: 121 NDGYLVTQEGYIVQGENGPIELSQGDISVDEMGNIKNNGQLVDRLRIVDFDNYDGLRKEG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 N + T + + + ++ IS + ++ V + Sbjct: 181 NNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVVIAF 237 Query: 224 GTTLFETVP 232 TL + V Sbjct: 238 DETLGKAVN 246 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 26/253 (10%), Positives = 70/253 (27%), Gaps = 8/253 (3%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L +N ++ + + D+V P Sbjct: 1 MLRGLYAASSGMVTQTKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNVPPD 60 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + ++ + + + N F DG G T + Sbjct: 61 GKIGKMDYGILIDTFHTNFEEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYA 404 ++ + G + + ++ G + N + + + L + Sbjct: 121 NDGYLVTQEGYIVQGENGPIELSQGDISVDEMGNIKNNGQLVDRLRIVDFDNYDGLRKEG 180 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + ++ + + I + + VN +E+ +I V ++Y + K+ Sbjct: 181 NNLF----FIDNSANVQVIPAT---GRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKV 233 Query: 465 IMFTDKMLQTLLE 477 ++ D+ L + Sbjct: 234 VIAFDETLGKAVN 246 >gi|269792758|ref|YP_003317662.1| hypothetical protein Taci_1148 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100393|gb|ACZ19380.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 263 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 11/194 (5%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N L E A E+ + F + + Q Sbjct: 76 SLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTFYTRSGHFQRNEQGQV 135 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 ++ L G + + L G + ++ + T L Sbjct: 136 VTHEGMLLLGDGGPIEIGEGTQVLVGEDGQVFVDGEAVGTVRVVR----FQTPSRLRNVG 191 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 ++ + E S + + ++ + VN+ EE++ +I+ ++Y + K Sbjct: 192 KSLLA--ETQESGAPEDVEAPKLAVG-----FLERSNVNVVEEMTKMIEANRAYEAAAKT 244 Query: 465 IMFTDKMLQTLLEG 478 + D++ L Sbjct: 245 VTIQDELSSRLSNS 258 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/133 (7%), Positives = 28/133 (21%), Gaps = 22/133 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + + + N+ N D + R + Sbjct: 1 MFRGIYAGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEELMDRIERSMDPVV 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSP 100 +P + S + + + A+ + E D N+ Sbjct: 61 KEGFAPGGRIPIGVLSLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTF 120 Query: 101 THYISKLRDSLES 113 + + + Sbjct: 121 YTRSGHFQRNEQG 133 >gi|319650827|ref|ZP_08004964.1| FlhP protein [Bacillus sp. 2_A_57_CT2] gi|317397425|gb|EFV78126.1| FlhP protein [Bacillus sp. 2_A_57_CT2] Length = 275 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 3/138 (2%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTLLEY 403 + + D + S KN + F+ V IN L + Sbjct: 139 TGDGLPVLDENNNSIIINGQAKNFKVTETGSFLAETANGSIQEFNLGVVLINKPQFLEQK 198 Query: 404 ARNSIGWL-EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N +G + + + +++ V++ +E++ LI ++++Y + Sbjct: 199 GDNLLGLPDGVDGEGIYTELNGALRGQIGMAQGSLEQSNVDMSKEMTDLINLQRAYQFQS 258 Query: 463 KLIMFTDKMLQTLLEGVK 480 + + D+M+ L+ G++ Sbjct: 259 RSVSMADQMMG-LINGIR 275 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 15/44 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + A N +Q + N+ N D Y RR+ T Sbjct: 1 MNRTMITATNTLAQLQKQMDIVSHNVANIDTAGYKRREANFTDL 44 >gi|85715052|ref|ZP_01046037.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] gi|85698249|gb|EAQ36121.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] Length = 262 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 42/234 (17%), Gaps = 38/234 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44 A I NI N Y ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASAQGTIL 62 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F + Sbjct: 63 PVGIDLGGGVKTVGTPR---QMSQGTLSQTGNDLDIAIRGEGFFKIL------MPDGTFQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + + N + + ++A + + + + Sbjct: 114 YTRDGTFQMDNQGRIVNAQGNPVQPTITIPQNSAGITINSQGQVSVTLPGQTTPTVLGQI 173 Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + L + N + D +D + Q E + + Sbjct: 174 GLTRFINKAGLQPVGDNNFKETPASGPFQDGIANIDGFGDMQQSSLEQANVEVV 227 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 48/181 (26%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 S + + I D T ++ Q R + Sbjct: 82 SQGTLSQTGNDLDIAIRGEGFFKILMPDGTFQYTRDGTFQMDNQGRIVNAQGNPVQPTIT 141 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 + ++ + + + E S Sbjct: 142 IPQNSAGITINSQGQVSVTLPGQTTPTVLGQIGLTRFINKAGLQPVGDNNFKETPASGPF 201 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + F + +S V + E+S LI +++Y ++ K++ D+MLQ+ Sbjct: 202 QDGIANIDGFGDMQQSSLEQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMLQSASALF 261 Query: 480 K 480 + Sbjct: 262 R 262 >gi|296134368|ref|YP_003641615.1| flagellar basal-body rod protein FlgF [Thermincola sp. JR] gi|296032946|gb|ADG83714.1| flagellar basal-body rod protein FlgF [Thermincola potens JR] Length = 251 Score = 57.3 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 14/255 (5%), Positives = 48/255 (18%), Gaps = 35/255 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + S + N+ N + Y + + Sbjct: 1 MIRGLYTSAAGMLAESARNDVAANNLANVNTTGYKKDAAVFKSFPEMLIQRMEKPDNPAQ 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V + + L ++ + + Sbjct: 61 LKPEKVGWLGTGVIVDEVITIH---TQGQLKETTNPLDMAISGDGY-------FVIQTPA 110 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 E Y + + + D Sbjct: 111 GERYTRNGAFTLDSEGYLVTSEGNYVLGQRGRIRIGNNDIVVDKQGNISANGQVIDTLRI 170 Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217 + ++ R + + + + + + + I+ + + Sbjct: 171 VSFNDPNRLVKQGDSLFAGGQPVAGFNGQIMQKALETSNVNPVQEMVDLITIMRAYEANQ 230 Query: 218 VVYTSDGTTLFETVP 232 + + TL + + Sbjct: 231 KMIQAHDQTLGQAIN 245 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + T VN +E+ LI + ++Y + K+I D+ L + Sbjct: 190 GQPVAGFNGQIMQKALETSNVNPVQEMVDLITIMRAYEANQKMIQAHDQTLGQAIN 245 >gi|222053731|ref|YP_002536093.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] gi|221563020|gb|ACM18992.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] Length = 244 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 10/131 (7%), Positives = 28/131 (21%), Gaps = 6/131 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---N 59 + + A + A ++ I N+ NA+ + + +Q + + Sbjct: 1 MNSGLYAALSGNLAAMRRLDVISNNLANANTAGFKGDRLQFESVLASSKSQSQAAASPND 60 Query: 60 KNMFDKVLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +F + + Q + + R Sbjct: 61 SPVFSSEIFFTDYSPGPLKQTGNTLDVALDGDGFFVVNTPQGRAYTRQGNFRMDSAGRLV 120 Query: 117 NLSEDILGKTV 127 + Sbjct: 121 TSEGYEVQGGG 131 >gi|332530688|ref|ZP_08406619.1| flagellar basal body rod protein [Hylemonella gracilis ATCC 19624] gi|332039856|gb|EGI76251.1| flagellar basal body rod protein [Hylemonella gracilis ATCC 19624] Length = 101 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58 + ++ + + A + S N+ N + + R+ + + R E Sbjct: 2 MASLSSIGISGLQAAQLRLDSSAHNVANLNTPGFKRQTVTQQDAPNLAGTRTRLGKAREE 61 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + +V+ S++ + LQ+ + ++M+ + Sbjct: 62 GVTLEGEVVEQMSASHAFKANLQTLKTQEDMLGSLLDT 99 >gi|254438850|ref|ZP_05052344.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198254296|gb|EDY78610.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 255 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 67/255 (26%), Gaps = 8/255 (3%) Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280 S+ T + + + + + V S + G+ +L++ Sbjct: 7 VSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLMERDG 66 Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + ++ G + + L ++ N + Sbjct: 67 VLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFV------LGY 120 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + L + + Y + L Sbjct: 121 DGLGGTELGQLEVPFQSVNGSTLTALEINASGVMRGTYGSEEPVILGQIAIGAFPNVTAL 180 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + + + L + Q F + + VNL EL+ +I+ +Q ++ Sbjct: 181 RQL--GMGRFQATEEAGGLMLGVSGQDGFGKVQTGALESSNVNLTTELTSMIQAQQQFSG 238 Query: 461 SNKLIMFTDKMLQTL 475 S++++ M++ L Sbjct: 239 SSRILQAYSDMIEKL 253 Score = 41.6 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 7/127 (5%), Positives = 24/127 (18%), Gaps = 11/127 (8%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS-----------ENKNMFDKVLHA 69 + + N+ NA + + + + + ++ L Sbjct: 4 ISVVSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLME 63 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + + + + D + Sbjct: 64 RDGVLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFVLGYDGL 123 Query: 130 NAEEVVQ 136 E+ Q Sbjct: 124 GGTELGQ 130 >gi|170022971|ref|YP_001719476.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] gi|169749505|gb|ACA67023.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] Length = 102 Score = 57.0 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 7/91 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60 F+ A N ++Q +I NI N+ K + T + P V V Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS 91 D + F ++E Sbjct: 62 K--DGQKEKTGMGLDLAISGGGFFVVRESSG 90 >gi|126697841|ref|YP_001086738.1| flagellar basal body rod protein FlgG [Clostridium difficile 630] gi|255305297|ref|ZP_05349469.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC 43255] gi|115249278|emb|CAJ67091.1| Flagellar basal body rod protein FlgG [Clostridium difficile] Length = 253 Score = 57.0 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%) Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 N + L + + N NK + + Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + ++ + + + I + Y V+LQEE LI ++++ +++K Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236 Query: 465 IMFTDKMLQ 473 I D+M Q Sbjct: 237 IKTADEMWQ 245 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 41/171 (23%), Gaps = 12/171 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + +F ++ + + I NI N+D+ Y + + + + Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + A ++ + + Sbjct: 49 LNRPSYPTNGNDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + + + + + I + +S + Sbjct: 109 YTRNGGFNVDALGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159 >gi|323341367|ref|ZP_08081611.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091244|gb|EFZ33872.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + F I++ V++ + +S +I +++Y +++K + TD+MLQT+ Sbjct: 193 GNLISSANNNAGFGQINQGLVELSNVDVADTMSKMIITQRAYQMNSKALQSTDEMLQTI 251 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 40/147 (27%), Gaps = 12/147 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---------T 51 M++ + + +++ N + + N+ N D Y + T N Sbjct: 1 MNMSQILSISRSGLNAYQHEMDVVSNNLANVDTLGYKDKRTTFQELLNNGTNANEVGLSQ 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLR 108 + N + + ++ + S + +++ + D NN R Sbjct: 61 NAGNVAINAGLNVQQVNENLSQGAFKSTAGTYDLAIDGEGYFGVRDGANNLYLTRDGSFR 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135 + + + + Sbjct: 121 RDADGNLVTSKGMKVEVQSNVPSSQWP 147 >gi|56421866|ref|YP_149184.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] gi|56381708|dbj|BAD77616.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] Length = 273 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +L A N N Q+ +I NI N++ + RR+ Sbjct: 1 MLRSMLTAANTMNALQQRLDTISHNIANSNTVGFKRREASFAELLT 46 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 3/113 (2%) Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 ++ L D + V I L N + Sbjct: 162 MSPTGTLTATNTDGRVVARVNLGVTMIRRPQLLEARGGNVYALPNVPGAAEELNGSLRGQ 221 Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + V+L EE+ L+ ++Y ++ + + +++ML L+ G++ Sbjct: 222 I--SVKQGALEQANVDLGEEMVGLMATSRAYQLNARAVSISEQMLG-LINGMR 271 >gi|315185553|gb|EFU19322.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 269 Score = 56.6 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + VN E+ +I+V ++Y + K I D +L L+ Sbjct: 219 VRQGFLEGSNVNPVTEMVQMIEVNRAYEANQKTIETQDSLLGRLIN 264 Score = 41.9 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%) Query: 15 NNAS-QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63 + + +I N+ N D Y R + PE + R N F Sbjct: 1 MASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPE----LLIRRMNDKYF 46 >gi|222834410|gb|EEE72887.1| predicted protein [Populus trichocarpa] Length = 170 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 11/153 (7%), Positives = 27/153 (17%), Gaps = 33/153 (21%) Query: 21 FASIVRNIENADNKNYVRRDTMTTIS------------------------PENVTVVTQR 56 I N+ N + R + V V Sbjct: 1 MDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQTVLPSGMQIGTGVRPVATE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + +A + F + + + Sbjct: 61 RIH---TQGNPQQTGNAKDVAIIGNGFFQV------TMPDGTTSYTRDGSFQVDQNGQLV 111 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 S ++ + A + + + + R Sbjct: 112 TSSGFVINPAITLPANYTSPRWASFNSPLSRTR 144 >gi|163744349|ref|ZP_02151709.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] gi|161381167|gb|EDQ05576.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] Length = 261 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 9/152 (5%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSEN 59 + A I NI NA+ + S Sbjct: 3 ALSIAATGMMAQQTNVDVISNNIANANTTGFKASRAAFQDLIYQSMQREGALTSEAGSTR 62 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSK 116 D + ++ + A + ++ + + + S+ Sbjct: 63 PVGIDIGMGVQTAGTVRLNTQGGMVATENQLNVAIDGRGYFSVTLPDGNQAFTRDGSFQL 122 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + +I+ +V NT+A E+ + Sbjct: 123 SPEGEIVTMQGYRVEPGLVVPENTTAVEINEQ 154 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 L S + I + Y VN+ ++++ LI +++Y +++K I D+ Sbjct: 193 LATEASGEAQVVNPGDPGAGMIRQGYLEASNVNVIQQITDLISAQRAYEMNSKSIETADQ 252 Query: 471 ML 472 ML Sbjct: 253 ML 254 >gi|300870897|ref|YP_003785768.1| flagellar hook-basal body complex protein FlhO [Brachyspira pilosicoli 95/1000] gi|300688596|gb|ADK31267.1| flagellar hook-basal body complex protein, FlhO [Brachyspira pilosicoli 95/1000] Length = 282 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 W++ + S + K V + + VN E+ +I+V+++Y +++K I D Sbjct: 211 WVDTDISGPAYIAQKG-VDRPKVLSRFLEMSNVNPINEMVRMIEVQRAYELNSKTISTHD 269 Query: 470 KMLQTLLE 477 ++ ++ Sbjct: 270 TLIGRVVN 277 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/185 (7%), Positives = 32/185 (17%), Gaps = 40/185 (21%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45 + + + N+ N D + R Sbjct: 6 YTGASGMIAEQYRLDVVANNLANVDKPGFKRDTATFKAFPEMMAARTEDDGVVIFPLGST 65 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 V V L + + + F A + + Sbjct: 66 DIRPYVGRLGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGF-------FAVETPH 115 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 ++Y + + + R D E Sbjct: 116 GERYTRNGSFLIDKDNYLVTKHGYKVMGENGYIQIKSNNFNIDEEGRISINRRYQDNEDF 175 Query: 158 LEISN 162 ++ ++ Sbjct: 176 VQFND 180 >gi|302390534|ref|YP_003826355.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] gi|302201162|gb|ADL08732.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] Length = 260 Score = 56.6 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 6/152 (3%), Positives = 27/152 (17%), Gaps = 34/152 (22%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + I N+ N + + + + Sbjct: 1 MIRGLYTSASGMLAEMARTDVISNNLANINTTGFKKDRAVFRAFPEMNIHRYDDPQPVGA 60 Query: 46 ------------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93 + R + + S+ + + A + Sbjct: 61 GFVIDPVPYIGVLGTGAGLDEIRV---DFTQGRIEMTSNPLDLAI--EDTAAGETSFFEI 115 Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 + + + + Sbjct: 116 QTPAGIRYTRDGSFTINADGFLVTREGYYVMG 147 Score = 40.0 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 40/188 (21%), Gaps = 11/188 (5%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 LDE+ E + ++ + Sbjct: 74 GTGAGLDEIRVDFTQGRIEMTSNPLDLAIEDTAAGETSFFEIQTPAGIRYTRDGSFTINA 133 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + N++N + +A ++L + Sbjct: 134 DGFLVTREGYYVMGENGPINLRNGSKVEINTEGEVYLDGLMVDRLRIAAFPAGLSLEKQG 193 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N I + VN E+ LI ++Y + ++ Sbjct: 194 DNLY-----RAQGVPLPANA------RIIQGALERANVNAVSEMVNLISAFRAYEANQRM 242 Query: 465 IMFTDKML 472 + D L Sbjct: 243 VRAHDDTL 250 >gi|239907793|ref|YP_002954534.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797659|dbj|BAH76648.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 261 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/203 (8%), Positives = 38/203 (18%), Gaps = 22/203 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53 MS+ + A + + N+ N + Y R + Sbjct: 3 MSMYSAVFGALS----TETRLNISANNLANVNTTGYKRDRVSFEDTFYRYAHDYHMDPRG 58 Query: 54 TQRS----------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTH 102 R + + + A+ NS Sbjct: 59 DIRQKQLLPRADLIAKPRLAMQQIDFAQGALTATGNPLDLAIQGPGFFKVSAGQGNSYYT 118 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S E N + + + V A + + + N Sbjct: 119 RNGAFHRSAEGMLVNDQDMPVLGGGGPIQLPEGRISVGGDGAVYVDGAQVGQVDVVTVQN 178 Query: 163 LRRFLSELTVVNDAIKFKTASKH 185 + + T + Sbjct: 179 PDALMKYGANLYMPQTGATVQEG 201 Score = 42.3 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 13/166 (7%), Positives = 43/166 (25%), Gaps = 6/166 (3%) Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365 GN ++ + + Sbjct: 90 TATGNPLDLAIQGPGFFKVSAGQGNSYYTRNGAFHRSAEGMLVNDQDMPVLGGGGPIQLP 149 Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425 + Y D V + L++Y N ++ + Sbjct: 150 EGRISVGGDGAVYVDG--AQVGQVDVVTVQNPDALMKYGANLY----MPQTGATVQEGVL 203 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + +++ + V + EE+ +I+ ++++ K++ ++++ Sbjct: 204 RAGTTEVAQGFLEKPNVEVVEEMVSMIETQRTFEAYQKVMSSSNEL 249 >gi|289577406|ref|YP_003476033.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] gi|289527119|gb|ADD01471.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] Length = 251 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 63/249 (25%), Gaps = 22/249 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51 +L A + + + N+ N + Y R +T+ P Sbjct: 1 MLRGLYAASSGMVTQIKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNIPPD 60 Query: 52 --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + N + L + + F + + S Sbjct: 61 GKIGKMDYGILIDTFHTNFEEGSLTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + E Y + D + + + N + + V ++R + Sbjct: 121 NDGYLVTQEGYIVQGENGPIELLQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLRKEG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 N + T + + + ++ IS + ++ V + Sbjct: 181 NNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVVIAF 237 Query: 224 GTTLFETVP 232 TL + V Sbjct: 238 DETLGKAVN 246 Score = 41.9 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + VN +E+ +I V ++Y + K+++ D+ L + Sbjct: 199 GRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246 >gi|13472570|ref|NP_104137.1| flagellar basal body rod protein FlgF [Mesorhizobium loti MAFF303099] gi|17366619|sp|Q98HE3|FLGF_RHILO RecName: Full=Flagellar basal-body rod protein flgF gi|14023316|dbj|BAB49923.1| flagellar basal-body rod protein; FlgF [Mesorhizobium loti MAFF303099] Length = 241 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 48/205 (23%), Gaps = 2/205 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ +I N+ NA+ + + + Sbjct: 1 MQDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDMVSGTGQKSVSFASSG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L ++ + F + A D + + + ++ Sbjct: 60 -KTYLSGAHGSLSETGNPFDFAIQGDAWFAIDTPAGTVMTRDGRFSMNENGELMSIEGHP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +N A +R + + + N + + N I Sbjct: 119 VLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGENFVRYGNSGIVPART 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207 + + S + + Sbjct: 179 PEPVTDRSDVGIAQGFVEESNVNPV 203 >gi|206890142|ref|YP_002249849.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742080|gb|ACI21137.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 239 Score = 56.6 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 11/240 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD------TMTTISPENVTVVTQ- 55 + + + ++I N+ N + Y ++ + + P V+ Q Sbjct: 1 MYKGIYITMTGMSMRENELSAISNNLANINTTGYKKQSFASRLYPLLSGKPSQSNVIYQD 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + A+ Q E N ++Y Sbjct: 61 ARAQTYFGTQYIDTSQGALKQTHNPFDLGIQGEGFFVVRQGNKILYTREGSFTRDKDNYL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + I D + +++ L + + Sbjct: 121 VTQTGLRVLDENNNPIIIDGTKIEYGKDG--TILVDGNPIGRIKLVKLNNLRHVGQSLYE 178 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 ++ A+ +++ + + +SE++ + +RN + T++ + L + +I Sbjct: 179 GVEAGQANGQILQGWIE--NSNVNPMSEMVQMIQAIRNFDFTQRVTTNFSELAQRAVSEI 236 >gi|258592561|emb|CBE68870.1| Flagellar basal body and hook proteins [NC10 bacterium 'Dutch sediment'] Length = 245 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 7/137 (5%), Positives = 28/137 (20%), Gaps = 21/137 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTISPE 48 +++ A + + ++ +N+ N + + + PE Sbjct: 1 MVSGLYTAASGLMAQMAKMEALSQNLANTGTPGFKGDLMVIEGGARGPLQSALLIEGRPE 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 V + ++ + + + Sbjct: 61 GPQPVWIGRRVTDFGRGLIRETQNPLDLANSGPGY-------FVVQTPQGVRYTRAGNFA 113 Query: 109 DSLESYSKNLSEDILGK 125 E + + + Sbjct: 114 IDAEGHLETPDGSRVQG 130 >gi|158423059|ref|YP_001524351.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] gi|158329948|dbj|BAF87433.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 257 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/251 (9%), Positives = 65/251 (25%), Gaps = 15/251 (5%) Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + + ++ + V V++ + ++ + R I S Sbjct: 10 ADVIGIGASGLRAQVVKVATVADNTANARTPGHRKVAAETTSAPAGAGVATGLRHYISSA 69 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 ++ + + D S + Q + + Sbjct: 70 GTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAAGYALMATPNG 129 Query: 362 LWNVKNL------------AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + L + D ++ P+A + A + Sbjct: 130 GGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDGMTPVAGD--A 187 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + S + Q I Y V++ E++ L+ + S+ + + + Sbjct: 188 FQPGSASGPARTFVSGQGP-GTIRAGYLEDSNVDMATEMTDLVTSQASFMANFRTVRMGI 246 Query: 470 KMLQTLLEGVK 480 +ML +L + Sbjct: 247 EMLDVVLNMKR 257 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 50/239 (20%), Gaps = 8/239 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M+L V + + A++ N NA + + TT +P V T Sbjct: 7 MALADVIGIGASGLRAQVVKVATVADNTANARTPGHRKVAAETTSAPAGAGVATGLRHY- 65 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE-SYSKNLS 119 + + +A + D N+ + KN + Sbjct: 66 ------ISSAGTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAA 119 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L T K+ AD + Sbjct: 120 GYALMATPNGGGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDG 179 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T DA +S + D V + T T Sbjct: 180 MTPVAGDAFQPGSASGPARTFVSGQGPGTIRAGYLEDSNVDMATEMTDLVTSQASFMAN 238 >gi|639926|gb|AAA61738.1| flagellar hook polypeptide [Borrelia burgdorferi] Length = 190 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 33/157 (21%), Gaps = 13/157 (8%) Query: 20 QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN-------------MFDKV 66 + + NI N + + + R + + Sbjct: 1 RMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARGGTNPKQVGLGMNVASID 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 A + N + + N + + + Sbjct: 61 TIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDVDSDRHLVNPANGMRIQG 120 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + E + NT++ I DKE N+ Sbjct: 121 WMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNV 157 >gi|260574405|ref|ZP_05842409.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2] gi|259023301|gb|EEW26593.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2] Length = 126 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENK 60 LL A + + + + NI NAD Y R+ + V R + Sbjct: 4 LLQSLTMAASGMEAQAMRLRHVSENIANADTPGYHRKTMSFQEAMDGGTVEAGPVRLDRS 63 Query: 61 NMF 63 + Sbjct: 64 ELV 66 Score = 38.5 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 5/119 (4%) Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE---KNRSDSHDL 421 +G D ++ E +RS+ + Sbjct: 9 TMAASGMEAQAMRLRHVSENIANADTPGYHRKTMSFQEAMDGGTVEAGPVRLDRSELVKI 68 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + + V+L E++ + ++SY + K+ +M Q+L E ++ Sbjct: 69 YDPGHPLAD--ETGHYDGSNVDLVIEIADAREAQRSYEANLKMFDQARQMTQSLFELLR 125 >gi|255521215|ref|ZP_05388452.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J1-175] Length = 99 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T + I + + S S N +SES S+ GVN+ EE++ +++ + Sbjct: 17 GTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIMQYQS 76 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 Y + K + + M++ LL + Sbjct: 77 YYVANTKAMNTVNDMMKALLAML 99 >gi|288870655|ref|ZP_06114865.2| flagellar hook-associated protein 1 [Clostridium hathewayi DSM 13479] gi|288866364|gb|EFC98662.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM 13479] Length = 170 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 17/169 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PEN 49 A+ + I NI N + K Y R+ T + Sbjct: 2 GLETAKRGLMVNQKALDIIGNNISNINTKGYTRQRLDTVSVQVYGSDRFQYSSIPLAGQG 61 Query: 50 VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLR 108 V D S +G + E + +D + ++ L Sbjct: 62 VDARGVSQIRNPYLDTKFREQYSDVGYFDQKAAIMEQMEGILSDPEVEGTGIKDALTVLS 121 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 +L +S++ ++ V++ + V Q N ++ + ++ Sbjct: 122 QALADFSQHPYQETNANIVLNAFKGVTQVLNEYDTNLKSLEEQTKNDLS 170 >gi|94263288|ref|ZP_01287104.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267693|ref|ZP_01290962.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94272297|ref|ZP_01292100.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450173|gb|EAT01484.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451895|gb|EAT02626.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456371|gb|EAT06495.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 243 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/195 (9%), Positives = 42/195 (21%), Gaps = 4/195 (2%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73 ++ + N+ N D Y R++T NVT R + Sbjct: 16 MLGQERRLDQVANNLANVDTAGYKRQNTAFWEMLYNVTAD--RQRIGKGSHTLTDHQQGN 73 Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + Q E + + ++ + Sbjct: 74 VQQTDNPLDLAINGEGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGDGGPVVID 133 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 + Q + +L+I + L + + + Q Sbjct: 134 EAGGEVAIDPQGQIHQNQV-MIGQLDIVTVNDLT-TLAKEGENLFRLEDDGEEMAALDFQ 191 Query: 194 RDVLLQKISEIIGIS 208 + S + I Sbjct: 192 VRQGYVEKSNVNSIE 206 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 58/212 (27%), Gaps = 8/212 (3%) Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKLCQGI 334 + + ++ Q +L +++ I G+ D L Sbjct: 28 NNLANVDTAGYKRQNTAFWEMLYNVTADRQRIGKGSHTLTDHQQGNVQQTDNPLDLAING 87 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + L D D DP I Sbjct: 88 EGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGDGGPVVIDEAGGEVAIDPQGQI 147 Query: 395 NTNVTLLEYARNS-IGWLEKNRSDSHDL------HMKSQVVFNHISESYSNTVGVNLQEE 447 + N ++ + L + +L + + + + Y VN EE Sbjct: 148 HQNQVMIGQLDIVTVNDLTTLAKEGENLFRLEDDGEEMAALDFQVRQGYVEKSNVNSIEE 207 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++ +I + ++Y K+I D+M + V Sbjct: 208 MTAMIDLYRNYEAQQKMIQGIDEMDDLAISRV 239 >gi|312126817|ref|YP_003991691.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor hydrothermalis 108] gi|311776836|gb|ADQ06322.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor hydrothermalis 108] Length = 147 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 15/91 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 M + N + + + I +NI NA+ Y R+ + Sbjct: 1 MGMFDAINISSSALTAQRVRMDVIAQNIANANTTKTENGQPYRRKVVVFEE--------- 51 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85 +R + + + ++ +++ Sbjct: 52 RRQSFAEILSQKIGQAQASSYGGVRVKAILE 82 >gi|75675314|ref|YP_317735.1| flagellar basal body rod protein FlgG [Nitrobacter winogradskyi Nb-255] gi|74420184|gb|ABA04383.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi Nb-255] Length = 262 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 53/211 (25%) Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329 G + V + + S + + I+ D Sbjct: 52 GAQASTQGTIMPVGIDLGGGVKTVGTPRQMSQGTLSQTGNDLDIAIRGEGFFKIQMPDGT 111 Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 T ++ R + + ++ + Sbjct: 112 FQYTRDGTFQMDNMGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLG 171 Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + + E S + + F + +S V + E+S Sbjct: 172 QIGLTRFINKAGLQPVGDNNFKETPASGPFQDGIANLDGFGDMQQSNLEQANVEVVSEIS 231 Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LI +++Y ++ K+I D+MLQ+ + Sbjct: 232 DLIAAQRAYEMNAKVISAADQMLQSAAALFR 262 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 41/234 (17%), Gaps = 38/234 (16%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44 A I NI N Y ++ Sbjct: 3 ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASTQGTIM 62 Query: 45 ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V V M L + + + F ++ Sbjct: 63 PVGIDLGGGVKTVGTPR---QMSQGTLSQTGNDLDIAIRGEGFFKIQ------MPDGTFQ 113 Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 + N + + ++A + + + Sbjct: 114 YTRDGTFQMDNMGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQI 173 Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + L + N + D LD + Q E + + Sbjct: 174 GLTRFINKAGLQPVGDNNFKETPASGPFQDGIANLDGFGDMQQSNLEQANVEVV 227 >gi|310644366|ref|YP_003949125.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309249317|gb|ADO58884.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 275 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 47/167 (28%), Gaps = 4/167 (2%) Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + I D ++ ++ + ++ GS Sbjct: 106 QGNGQKAWTRDGGFHFIPDPNDNETMMLTTAEGYSVLDNNDIPVTAPAGSKVAINSDGEL 165 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 + + P + L N + + + + + Sbjct: 166 LIRANGTGAPTVGQRIKLMDVQRPEGLQQRDDNLF-VLANGVTEADVFGAAGVAGAVPTD 224 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 V + Y VNL E++ +++V++ Y ++ + + +D M+ Sbjct: 225 V---SVRSGYLEESNVNLAGEMTDMMQVQRMYQMAARALTSSDTMMN 268 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 36/158 (22%), Gaps = 7/158 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + Q+ I NI N + Y + NV + + + Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANVNTVGYKSKQGSFEDVLANVQ----QQPSTYL 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + +G + E ++ ++L N + Sbjct: 57 QNGRAMPLGYNLGYGVKTTAIMKNME---QGPLKETGLPTDLAIQGNALFEIQGNGQKAW 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + N + + +I + Sbjct: 114 TRDGGFHFIPDPNDNETMMLTTAEGYSVLDNNDIPVTA 151 >gi|223038370|ref|ZP_03608664.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Campylobacter rectus RM3267] gi|222880227|gb|EEF15314.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Campylobacter rectus RM3267] Length = 41 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L L+ LI V++ + ++K I +D+ML TLL+ Sbjct: 1 MSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTLLQLK 41 >gi|218135322|ref|ZP_03464126.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] gi|217990707|gb|EEC56718.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] Length = 276 Score = 56.2 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 65/260 (25%), Gaps = 3/260 (1%) Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + + T + + + + +A + K Sbjct: 10 WTAASGMTAQQTNVDTIANNLANVNTTGYKTESAEFKTLLYQNLQTKTTTANGENKPVNA 69 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + + + + V G N + Sbjct: 70 QVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFFISPLQ 129 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + N L G+ + D Y D G+ Sbjct: 130 DGSMMLCTSDGNA-VLNSEGAPITFNNMEANKITVDADGQFMYPDDTGNPAAIGIQFGLY 188 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIK 453 + S G L + L+ + + + Y VN+ E+ LI Sbjct: 189 QFTNPSGLDKTSGGLLAATDASGDALNESVDQVTKKSQLKQGYLEGSNVNVATEMVNLIT 248 Query: 454 VEQSYNISNKLIMFTDKMLQ 473 +++Y +++K I +D+MLQ Sbjct: 249 AQRAYELNSKAINASDEMLQ 268 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 47/215 (21%), Gaps = 11/215 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51 ++ A + +I N+ N + Y T + Sbjct: 5 MMRSLWTAASGMTAQQTNVDTIANNLANVNTTGYKTESAEFKTLLYQNLQTKTTTANGEN 64 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + + +H + +F + Y ++ + Sbjct: 65 KPVNAQVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFF 124 Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 S ++ S + + E KI DAD + + Sbjct: 125 ISPLQDGSMMLCTSDGNAVLNSEGAPITFNNMEANKITVDADGQFMYPDDTGNPAAIGIQ 184 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + L D ++E + Sbjct: 185 FGLYQFTNPSGLDKTSGGLLAATDASGDALNESVD 219 >gi|260466625|ref|ZP_05812813.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] gi|259029631|gb|EEW30919.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] Length = 240 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 47/205 (22%), Gaps = 2/205 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ +I N+ NA+ + + + Sbjct: 1 MRDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDVVSGTGQKSVSFASSG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L + + F + A D + + ++ Sbjct: 60 -KTYLSGAHGPLNETGNPFDFAIQGDAWFAIDTPAGPVMTRDGRFSMNENGELMSIEGHP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +N A +R + + + N ++ + N I Sbjct: 119 VLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGVNFVRYGNSGIVPART 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207 + + S + + Sbjct: 179 PEPVTDRSDVGIAQGFVEESNVNPV 203 >gi|147678401|ref|YP_001212616.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] gi|146274498|dbj|BAF60247.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] Length = 256 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + F I + Y T V+L E++ LI+ + Y + + + D+M Sbjct: 190 EEAGEAIPGTPGSEGFGVIRQGYLETSNVDLTGEITGLIEAQTVYGFNARSVRIVDEM 247 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 27/150 (18%), Gaps = 30/150 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L + A N + +I ++ N Y R T Sbjct: 1 MLKALSSAVTGLNAQRTRVDAIAVDLANIAAAGYKRNRTRFAELVSQEIEKQGIPVAAEG 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + V + +K + + + + Sbjct: 61 RPARAGSGVRAES---ADKVLLAGETVKTERPFDLLIEGEGYFRVV------LPGGEEVY 111 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA 131 E S L + Sbjct: 112 TRNGCFTYDKEGNLYCSSGYRLEGVSLPEG 141 >gi|226944490|ref|YP_002799563.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719417|gb|ACO78588.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 135 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MS+ +F+ A + + SQ+ N+ N D+ Y + + + Sbjct: 1 MSMFNIFDIAGSALSAQSQRMNVTASNLANVDSVGSEDGQAYRAKQVLFESMARGRSDTG 60 Query: 55 QRSENKNMFD 64 + + D Sbjct: 61 GVRVVQVVED 70 Score = 39.2 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 6/26 (23%), Positives = 15/26 (57%) Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 E+ +I +SY + +++ + +ML Sbjct: 101 EMVNMIAASRSYQANVEVMNTSKQML 126 >gi|266621944|ref|ZP_06114879.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866378|gb|EFC98676.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 246 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 35/183 (19%), Gaps = 22/183 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---------------TTISP 47 + + F A + + NI N Y + + TT Sbjct: 1 MFSGFYTAASGVLMNQRALNISANNIANVKTSGYRSKRLVKTTFDEQLVRQMNGQTTAIG 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 T+ E L + + + Sbjct: 61 GGSTISLAEREMTTHRQGALVDTGKNFDMAISG-------DGLFVIQGEDRQYLTRNGHF 113 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 + Y + E + ++I++ + + L Sbjct: 114 TQDEDGYLVLKGVGQVMGDGGPIQVEEGGFRVGENGIIYDNENGELEQIQIVVPDNYDNL 173 Query: 168 SEL 170 + Sbjct: 174 TFY 176 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 25/51 (49%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V+ + + GVNL E++ ++V++++ ++ + D+M Sbjct: 185 NGVALTQVYPEVFQGKLEESGVNLNSEMTRAMEVQRAFQSCSRALTIIDQM 235 >gi|289804814|ref|ZP_06535443.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 65 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 14/44 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +++ A+ + I N+ N + R+ + Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44 >gi|206603526|gb|EDZ40006.1| Putative flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 267 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 26/142 (18%), Gaps = 32/142 (22%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45 + Q + N+ N + + R Sbjct: 9 VSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGFRMTPWGE 68 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + ++V + + + + + F + N Sbjct: 69 FPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDIAIKGEGFFRILTPRGEVLSRNG 128 Query: 99 SPTHYISKLRDSLESYSKNLSE 120 T + E Y + Sbjct: 129 RFTLDRGGRLVTHEGYGVLGED 150 >gi|261409668|ref|YP_003245909.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286131|gb|ACX68102.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 275 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 15/50 (30%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 + A N Q+ I N+ N + Y +++ V Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQG 50 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + VNL +EL+ +++V+++Y ++ + + +D M+ L ++ Sbjct: 218 APGEPPKSKVLSGFVEQSNVNLTDELTKMMEVQRAYQLTARALSSSDTMMN-LANTMR 274 >gi|289548727|ref|YP_003473715.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289182344|gb|ADC89588.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 241 Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 9/115 (7%) Query: 12 NICNNASQQFASIVRNIENADNKNYVR----RDTMTTISPENVTVVTQRSENKNMFDKVL 67 + + ++ I N+ N ++ R +P +V V R N V+ Sbjct: 13 SGMMLSQRKLEVITNNMANVSTPSFKRDVMLASVWQAPTPLSVPSVDPRLPQNNFLYPVV 72 Query: 68 HA-----HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + A N R + Y N Sbjct: 73 GGIYTDLRQGGLRHTGNSTDLAIDGDGFFAVSSGNEVLYTRKGNFRLDKDGYLVN 127 >gi|257457889|ref|ZP_05623048.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC 35580] gi|257444602|gb|EEV19686.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC 35580] Length = 151 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 25/81 (30%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-----NY-VRRDTMTTI--------- 45 M + + N A + + I NI NA Y R + Sbjct: 1 MGIFSSINIAATGMSAERLRTDVISDNIANASTTSSQEGGYFRRSRVILAQKNDGIDWRL 60 Query: 46 ----------SPENVTVVTQR 56 V V Sbjct: 61 PFVPSDMDRGVGTGVRVTGIE 81 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ LI +SY + ++ + +M Q LE + Sbjct: 104 KAGYVEYPNVNIVTEMVDLISASRSYEANAAVVQGSKEMFQRALEIGR 151 >gi|304407726|ref|ZP_07389377.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304343209|gb|EFM09052.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 270 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 52/217 (23%), Gaps = 1/217 (0%) Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316 + G++ + + V + + D L + + D + Sbjct: 46 TNAKQQPSAFKEPGRMSPMNYTQGWGVRLATIEPDLSQGPLQQTGNTLDIAIEGNALYEV 105 Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 + + + + + + Sbjct: 106 RTPDGTAYTRNGSFQLSPLANGSSVLATSDGNLLMGENDQPIVVPANHTIRVDADGTVQA 165 Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSHDLHMKSQVVFNHISES 435 D + L A N N D + + Sbjct: 166 VAGDGSASPVGKLKLLQATRPSLLTTVADNLYAVAEGVNVEDVLRTVSAGADSKVSLRQG 225 Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 Y V++ E++ LI V+++Y +S + + +D M+ Sbjct: 226 YVEQSNVDMTSEMTDLINVQRAYQLSARALTSSDSMM 262 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 15/49 (30%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51 + A N Q+ + NI N + Y R+D N Sbjct: 1 MNGSMINAMVSMNGLQQKLDILADNIANLNTVGYKRKDASFEDLLTNAK 49 >gi|218516400|ref|ZP_03513240.1| flagellar hook protein FlgE [Rhizobium etli 8C-3] Length = 126 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 5/34 (14%), Positives = 14/34 (41%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37 A + + + + +++ NI +A+ Y Sbjct: 29 FGSMKTAVSGMSAQANRLSTVSDNIADANTVGYK 62 >gi|1448943|gb|AAB04619.1| flagellar basal body distal rod protein [Borrelia burgdorferi] Length = 152 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 10/33 (30%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33 M L + N A + I NI N Sbjct: 1 MGLFSSINVASTGLTAQRLRIDVISNNIANVST 33 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VNL EE+ +I ++Y ++ +I + M ++ L ++ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151 >gi|310659047|ref|YP_003936768.1| flagellar component of cell-proximal portion of basal-body rod [Clostridium sticklandii DSM 519] gi|308825825|emb|CBH21863.1| flagellar component of cell-proximal portion of basal-body rod [Clostridium sticklandii] Length = 146 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43 MS+ + N + + + I +N+ NA+ Y R+ + Sbjct: 1 MSIFSSINISASALTAERTRMDVISKNLANANTTRTQSGDPYRRQVVVF 49 Score = 39.2 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + Y V+ E+ +I +SY + + + ML Sbjct: 99 EKGYVTMSNVDTITEMVDMISATRSYEANVTALNTSKSML 138 >gi|213621056|ref|ZP_03373839.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 78 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 10/78 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMFDKVLHAH 70 + E L Sbjct: 61 SGVQREYDAFITNQLRGA 78 >gi|45656202|ref|YP_000288.1| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599436|gb|AAS68925.1| flagellar basal-body rod protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 155 Score = 55.8 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44 M L + N + + + I NI N+ + + R + T Sbjct: 3 MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 53 Score = 44.3 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E++ +I +SY + ++I + M LE + Sbjct: 109 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 154 >gi|116327145|ref|YP_796865.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332198|ref|YP_801916.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119889|gb|ABJ77932.1| Endoflagellar proximal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125887|gb|ABJ77158.1| Endoflagellar proximal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 153 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44 M L + N + + + I NI N+ + + R + T Sbjct: 1 MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 51 Score = 44.3 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E++ +I +SY + ++I + M LE + Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 152 >gi|118443708|ref|YP_877999.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134164|gb|ABK61208.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 266 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 55/262 (20%), Gaps = 25/262 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMT----------- 43 ++ A + N Q I N+ NA Y + +D M Sbjct: 1 MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDNLVGKSFKDVMMHNYDKVVGGKH 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 N VL + + + F + S + Sbjct: 61 VKNDIGMLSMGSKLDQSYTNFTQGVLESTDKSTDFALQGRGFF-VVSRNSRVAGGGQNFY 119 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S D + + KI + E+ L+ S Sbjct: 120 TRDGHFHVERTGYLVNSSGDRVMGQNMRTGAMEPIYLGNERTGPSKISCNDRGELFLDGS 179 Query: 162 ---NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + + S + + + + V + + Sbjct: 180 LKYKINVVDFDNYETLRKQGDNLYSGGNPRAYNGAIVKQNYLEKSNVNVMEEVSDMMMTM 239 Query: 219 VYTSDGTTLFETVPRDINFEKM 240 L +++ + Sbjct: 240 RNFESNQKLVQSLDETLGKTVN 261 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 24/46 (52%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++Y VN+ EE+S ++ +++ + KL+ D+ L + Sbjct: 216 VKQNYLEKSNVNVMEEVSDMMMTMRNFESNQKLVQSLDETLGKTVN 261 >gi|313610100|gb|EFR85425.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL F2-208] Length = 92 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 T + I + + S S N +SES S+ GVN+ EE++ +++ + Sbjct: 10 GTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIMQYQS 69 Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479 Y + K + + M++ LL + Sbjct: 70 YYVANTKAMNTVNDMMKALLAML 92 >gi|239628978|ref|ZP_04672009.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519124|gb|EEQ58990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 246 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/176 (6%), Positives = 35/176 (19%), Gaps = 8/176 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54 + + F A + + NI N Y + + T + Sbjct: 1 MFSGFYTAASGMLMNQRSLDMAANNIANVKTSGYKPKRLVKTTFNEQLVRQMNGQTQGLG 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 Q S ++ + + + + + E Sbjct: 61 QGSTISIGTREMTTHGQAPVVDTGQTYDLAINGDGFFVIQGTDGQYLTRNGHFKRDEEGN 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + +I++ + L+ Sbjct: 121 LILPGVGQVMGDGGPVYVDESGFRVGADGIIYDNEDGELDQIQIVEPDDYDNLTFY 176 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + GVNL E++ ++V++++ K + D+M Q Sbjct: 195 TVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQMNQKTAN 241 >gi|312792645|ref|YP_004025568.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179785|gb|ADQ39955.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor kristjanssonii 177R1B] Length = 147 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 14/81 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 M + N + + + I +NI NA+ Y R+ + Sbjct: 1 MGMFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEER-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIG 75 ++S + K+ A SS+ G Sbjct: 53 KQSFADILTQKIGQAQSSSYG 73 >gi|329928721|ref|ZP_08282570.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] gi|328937502|gb|EGG33920.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] Length = 275 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 15/50 (30%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 + A N Q+ I N+ N + Y +++ V Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQG 50 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + VNL +EL+ +++V+++Y ++ + + +D M+ L ++ Sbjct: 218 APGEPPKSKVLSGFVEQSNVNLTDELTKMMEVQRAYQLTARALSSSDTMMN-LANTMR 274 >gi|224417700|ref|ZP_03655706.1| flagellar basal-body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827049|ref|ZP_04869934.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313141243|ref|ZP_07803436.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] gi|253510455|gb|EES89114.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313130274|gb|EFR47891.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] Length = 277 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/274 (8%), Positives = 69/274 (25%), Gaps = 26/274 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 + + + + I NI NA+ + R D + Sbjct: 1 MQGGYYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIKDQ 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 N ++ + D + + + + Sbjct: 61 TKDAAKFYNRSLNRVPQIVEEFTD---RSVGGITQTDNTFDFALSRENAYFMIETPEGIR 117 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E N + + + ++ + EV K ++ + E Sbjct: 118 FTRDGSFVLNQEGRLVNKEGYAVLPREYIESPQYIEIIDGFQIEVDKDGNLYNRSLNNEE 177 Query: 161 SNLRRFLSELTVV-NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 N + + VV + KF + + + ++R ++ + + +++ V Sbjct: 178 LNETILTANIAVVSFENPKFLQKIGDNLYKYPNERMNEMEVLERSGAVRQGYLEKSNINV 237 Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 + + + + ++ + I Sbjct: 238 VYEMTGLIETNRLVEAYSKVLKTHMDDLNTEAIT 271 >gi|15895408|ref|NP_348757.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum ATCC 824] gi|15025131|gb|AAK80097.1|AE007715_2 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC 824] gi|325509554|gb|ADZ21190.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum EA 2018] Length = 256 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 12/176 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54 +L + + ++ SI N+ N+ Y + VT Sbjct: 1 MLRIMWNGVSGMAAEQEKLDSISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDD 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRDS 110 + ++A G S AL + Sbjct: 61 NNRYTGSGVKANEWIRNNAQGSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVN 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + + L + V + A + + + + + + Sbjct: 121 ANGRIVDPNGNYLNIDYSVDPSTVKFTASNVAVAQDGTISIQNGQTTTNVGKINIY 176 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 72/245 (29%), Gaps = 9/245 (3%) Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + T+ + + + + A+ Sbjct: 21 SISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDDNNRYTGSGVKANEWIRNNAQ 80 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 + K +A + + DG + + ++ + + + Sbjct: 81 GSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVNANGRIVDPNGNYLNIDYSVD 140 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + KF + +A + + N + + N +++ ++ + Sbjct: 141 PSTVKFTASNVAVAQDGTISIQNGQT-TTNVGKINIYDVTGNDSMISVGKSLF----VPK 195 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + V I ++Y V+L E++ +I +++Y I++K + D M + Sbjct: 196 AGAQMFVNNKSV----IYQNYLENSNVDLGTEMTDMIVAQRAYQINSKSLETGDNMWSIV 251 Query: 476 LEGVK 480 K Sbjct: 252 NNMKK 256 >gi|326386932|ref|ZP_08208546.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] gi|326208612|gb|EGD59415.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] Length = 262 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 2/183 (1%) Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 + + + A + + + + + T ++ Sbjct: 75 IQSTTPDMTEGSLQSTGNALDLALDGDGYFQISMPGGQLSYTRAGNFTRSPEGLLVTSQG 134 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + S + +A L N Sbjct: 135 YALQPQITIPEGATGITVAQDGTVSATLPGSSQATSIGQITIASFTNPAALKAIGDNFYT 194 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 E S L + Q ++ + + V++ EL +I+ +++Y I++K++ D Sbjct: 195 --ETTGSGPVQLGIAGQNGRGNVRQGFLEASNVSVVSELVDMIECQRAYEINSKMVSAVD 252 Query: 470 KML 472 ML Sbjct: 253 DML 255 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 15/208 (7%), Positives = 35/208 (16%), Gaps = 27/208 (12%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------------- 49 + A+ + I N+ N + R Sbjct: 3 SSALYVARTGLEAQDTRMRVIANNLANVSTTGFKRDRANFASLAYQDARVAGAQSSNETT 62 Query: 50 -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 T V +S +M + L + +A+ + + Sbjct: 63 YATGLNLGTGVGIQSTTPDMTEGSLQSTGNALDLALDGDGYFQI------SMPGGQLSYT 116 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S E L + + + +I+ Sbjct: 117 RAGNFTRSPEGLLVTSQGYALQPQITIPEGATGITVAQDGTVSATLPGSSQATSIGQITI 176 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDF 190 + + Sbjct: 177 ASFTNPAALKAIGDNFYTETTGSGPVQL 204 >gi|206896319|ref|YP_002246665.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] gi|206738936|gb|ACI18014.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] Length = 221 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 7/168 (4%) Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 V ++ +D L + Y + F + Sbjct: 57 NIVDNAYLFTVNRDNMGPLSNTSGYALTNPQAYFVITDGTNRWLTRKGNFELDRDGNVSL 116 Query: 372 PDLINHYCD-SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 D + K + +Y R+SIG++ + ++ Sbjct: 117 QGFYVMNRDGAVAKATDLYSGNLLLVEADTSQYDRDSIGFVSTGQERIINVDEAG----- 171 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ + V+L E+ LI +++Y S K D++++ + Sbjct: 172 -LTANALEMSNVDLSAEMVKLIAAQRAYQFSAKAFRNADELIEASINL 218 >gi|56419752|ref|YP_147070.1| flagellar basal body rod protein FlgC [Geobacillus kaustophilus HTA426] gi|56379594|dbj|BAD75502.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] Length = 150 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 12/34 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MSL N + + + I NI N D Sbjct: 1 MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34 >gi|294827625|ref|NP_710527.2| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Lai str. 56601] gi|293385469|gb|AAN47545.2| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Lai str. 56601] Length = 153 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44 M L + N + + + I NI N+ + + R + T Sbjct: 1 MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 51 Score = 44.3 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E++ +I +SY + ++I + M LE + Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 152 >gi|254511648|ref|ZP_05123715.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium KLH11] gi|221535359|gb|EEE38347.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium KLH11] Length = 128 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50 MS + + + + + + NI NAD Y R+ Sbjct: 1 MSDFSHSLTASASALRAQAARLRHVSENISNADTPGYRRKTVPFETVKRGG 51 >gi|222148673|ref|YP_002549630.1| flagellar hook protein [Agrobacterium vitis S4] gi|221735659|gb|ACM36622.1| flagellar hook protein [Agrobacterium vitis S4] Length = 108 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS+ V N A + + +I NI NAD Y R +T + S V T RS + Sbjct: 1 MSISGVLNSATSGMLAQQTRLTNIASNIANADTPGYQRLNTTLSASGSGVAATTTRSTD 59 >gi|56695104|ref|YP_165451.1| flagellar basal body rod protein FlgC [Ruegeria pomeroyi DSS-3] gi|56676841|gb|AAV93507.1| flagellar basal-body rod protein FlgC [Ruegeria pomeroyi DSS-3] Length = 135 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44 MS + + + + + + NI NAD Y R+ Sbjct: 6 MSEFSKSLSVTASALRAQATRLRHVSENISNADTPGYRRKTVPFE 50 >gi|332800001|ref|YP_004461500.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] gi|332697736|gb|AEE92193.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] Length = 255 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/245 (6%), Positives = 58/245 (23%), Gaps = 36/245 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + I N+ N + + + + Sbjct: 1 MIRGLYTGASGMLSEMSRTDVISNNLANVNTSGFKKDRAIFRALPEMNIHRFDDPITVGL 60 Query: 46 ------------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93 V + N + + S+ + + F ++ Sbjct: 61 DRVIDPRPFIGMLGTGVMLDEI---NTDFSQGAIKVTSNPLDIALRGEGFFEVQTPEGIR 117 Query: 94 DHYNNSPTHYISKLRDSLESY----SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 + S T + + Y V+ + + V ++ + Sbjct: 118 YTRDGSFTIDRDGYIVTKDGYYVLGENGPMLLPQEGDVVISQQGEVTVSGQFVDRLEIVN 177 Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 ++ + SNL + + + + + + D++ + Sbjct: 178 FADQGQVVKQGSNLYNSQAPTVPTDAEVIQGALEGSNTNTISEMVDLITAFRAYEASQKV 237 Query: 210 IVRNN 214 I ++ Sbjct: 238 IQTHD 242 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 G + K S+ ++ + + + N E+ LI ++Y S K+I Sbjct: 182 GQVVKQGSNLYNSQAPTVPTDAEVIQGALEGSNTNTISEMVDLITAFRAYEASQKVIQTH 241 Query: 469 DKMLQTLLE 477 D+ L + Sbjct: 242 DETLDRAVN 250 >gi|303248240|ref|ZP_07334503.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] gi|302490378|gb|EFL50289.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] Length = 261 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/200 (6%), Positives = 34/200 (17%), Gaps = 22/200 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53 MS+L+ A + + N+ N + Y R + Sbjct: 3 MSMLSAVFGALS----TELRLNLSANNLANVNTTGYKRDRVSFEDTFLRYAHDYHMDPRG 58 Query: 54 ----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + ++ + A+ + + Sbjct: 59 NLREKELLPRADLVATPRLAEQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + A + Sbjct: 119 NGAFHRDAQGMLVTDQNYPVIGNG-GPVQIPDGRDISIDGAGSIYVDGAQVGQIDVVRVQ 177 Query: 164 RRFLSELTVVNDAIKFKTAS 183 + N + A+ Sbjct: 178 NPESLQKYGANLYMAQSGAT 197 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 47/178 (26%), Gaps = 7/178 (3%) Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + + S + + Sbjct: 79 EQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTRNGAFHRDAQGMLVTDQNYPV 138 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G+ + + ++++ + + V + +L +Y N Sbjct: 139 IGNGGPVQIPDGRDISIDGAGSIYVDGAQ---VGQIDVVRVQNPESLQKYGANLY----M 191 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +S + +++ Y V + EE+ +I+ +++Y K++ T+ + Sbjct: 192 AQSGATVREGAVADGETRVAQGYLEKPNVQVVEEMVNMIETQRTYEAYQKVMTNTNDL 249 >gi|203284669|ref|YP_002222409.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] gi|201084112|gb|ACH93703.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] Length = 282 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I VN E+ +I V + Y + K I D +L L+ Sbjct: 232 IESGVLECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLIN 277 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 34/209 (16%), Gaps = 40/209 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRD-------- 40 ++ A + + I N+ N D Y RR Sbjct: 1 MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 60 Query: 41 --------TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V + L + + +E Sbjct: 61 PKGYLETAPVVGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------EEGFFV 110 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 E + + T ++ Sbjct: 111 VQTPEGERYTRNGSFTLGREGILITKDGYPVIGEKGYIHIKDNNFKITEQGQIFHNSTFE 170 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKT 181 L + + + + N I Sbjct: 171 SNPKRLVSESENSWENYELLDNLKIVNFE 199 >gi|289523333|ref|ZP_06440187.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503025|gb|EFD24189.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 256 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/185 (9%), Positives = 45/185 (24%), Gaps = 7/185 (3%) Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 ++ + + N +V + Sbjct: 75 LSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRDGAGNIFYSRAGNFTLDANGFIVNQEG 134 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 NV +++ + + + L YA+N + Sbjct: 135 LTLLGDGGVPINVGDVSSVAIDERGTVVADGEILGAIQLFEFANPTYLRNYAKNL--FQA 192 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + L + VN+ E+ LI+ +++Y S + + D+ Sbjct: 193 NEAAGEPVLVETPM-----LVPGALEKSNVNVVYEMVRLIEGQRAYEASARTLTMQDEQT 247 Query: 473 QTLLE 477 +++ Sbjct: 248 GSMIN 252 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 13/194 (6%), Positives = 34/194 (17%), Gaps = 28/194 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A + + N+ N D + RR ++ Sbjct: 1 MFRGLYGASSAMLVQEKVIDVASNNLANVDTAGFKRRISVNKSFPEVMIERREAVGPFER 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V ++ + + + + + + F +L++ N Sbjct: 61 QVYWPIGSASLNVVLSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRD------GAGNIF 114 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + N L + + Sbjct: 115 YSRAGNFTLDANGFIVNQEGLTLLGDGGVPINVGDVSSVAIDERGTVVADGEILGAIQLF 174 Query: 161 SNLRRFLSELTVVN 174 N Sbjct: 175 EFANPTYLRNYAKN 188 >gi|124516714|gb|EAY58222.1| putative flagellar basal body rod protein [Leptospirillum rubarum] Length = 267 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 26/142 (18%), Gaps = 32/142 (22%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45 + Q + N+ N + + R Sbjct: 9 VSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGFRMTPWGE 68 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + ++V + + + + + F + N Sbjct: 69 FPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDVAIKGEGFFRILTPRGEVLSRNG 128 Query: 99 SPTHYISKLRDSLESYSKNLSE 120 T + E Y + Sbjct: 129 RFTLDRGGRLVTHEGYGVLGED 150 >gi|238916189|ref|YP_002929706.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871549|gb|ACR71259.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 256 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-----------------------M 42 A + ++ + N+ NA Y + Sbjct: 4 GLYTAYSGLTVQQKRLDVVSNNLANATTTGYKKEGLTTQSFKDVYGIKVKDETVGYINQN 63 Query: 43 TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + ++ + ++ Sbjct: 64 IGTLNLGAKVGESFRSWDQ---GSFQNTGNTFDFALSGSGLFSI--SFTNKAGETSTLYT 118 Query: 103 YISKLRDSLESYSKNLSEDILGK 125 + + E Y D + Sbjct: 119 RDGSFQMNREGYLVTKDGDFVLG 141 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +++ Y +N+ E+ +I + + + + K++ D+ML Sbjct: 194 AVDGATQTEATAKVNQGYLEASNINVVTEMVDMISIARDFESNQKIMNTIDEML 247 >gi|203288202|ref|YP_002223217.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] gi|201085422|gb|ACH94996.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] Length = 291 Score = 55.4 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I VN E+ +I V + Y + K I D +L L+ Sbjct: 241 IESGVLECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLIN 286 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 16/209 (7%), Positives = 34/209 (16%), Gaps = 40/209 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRD-------- 40 ++ A + + I N+ N D Y RR Sbjct: 10 MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 69 Query: 41 --------TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 + V + L + + +E Sbjct: 70 PKGYLETAPVVGKLGTGVEENEI---YTSFEQGSLKITGNPLDLALT-------EEGFFV 119 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 E + + T ++ Sbjct: 120 VQTPEGERYTRNGSFTLGREGILITKDGYPVIGEKGYIHIKDNNFKITEQGQIFHNSTFE 179 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKT 181 L + + + + N I Sbjct: 180 SNPKRLVSESENSWENYELLDNLKIVNFE 208 >gi|308071138|ref|YP_003872743.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860417|gb|ADM72205.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 275 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 14/176 (7%), Positives = 44/176 (25%), Gaps = 4/176 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + + + D ++ ++ + ++ GS Sbjct: 97 IQGNAMFEVQGNGQKAWTRDGSFHFVPDPNDSATMMLTTAEGYSVLDNNDVPVTAPAGSK 156 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 + + P + L Sbjct: 157 VAISSDGELLIRANGTGAPTVGQRIKLMDVQRPEGLEQRDDNLFVLLNGVTE----ANVF 212 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + + Y V+L E++ +++V++ Y ++ + + +D M+ Sbjct: 213 GAAGVAGAVPADVSVRSGYLEESNVDLAGEMTDMMQVQRMYQMAARALTSSDTMMN 268 Score = 44.6 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 7/115 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + Q+ I NI N + Y + NV + + + Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANINTVGYKSKQGSFEDVLANVQ----QQPSTYL 56 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + +G + E ++ +++ N Sbjct: 57 QNGRAMPLGYNLGYGVKTAAIMKNME---QGPLKETGLPTDLAIQGNAMFEVQGN 108 >gi|317052365|ref|YP_004113481.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum S5] gi|316947449|gb|ADU66925.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum S5] Length = 151 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43 MS + + Q+ I N+ NA Y R+D + Sbjct: 1 MSFFDGLKISSSALFAQRQRMNVISSNLANAHTTRAEDGTYYKRKDLVF 49 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +N+ EE++ +I +SY + +I KM L + Sbjct: 111 NINVVEEMTDMITASRSYEANITMIETIKKMANEALGLGR 150 >gi|239907806|ref|YP_002954547.1| putative flagellar basal-body rod protein [Desulfovibrio magneticus RS-1] gi|239797672|dbj|BAH76661.1| putative flagellar basal-body rod protein [Desulfovibrio magneticus RS-1] Length = 128 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRS 57 + + AQ+ + S A N+ N + Y +D + V V Sbjct: 1 MTDAISAAQSALSAFSTSMAVTANNVANVNTDGYKSQDARLETGPDGQGVRVSDIVR 57 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 34/126 (26%) Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++S N+ + + + + Sbjct: 1 MTDAISAAQSALSAFSTSMAVTANNVANVNTDGYKSQDARLETGPDGQGVRVSDIVRDAS 60 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + +Q S T V+L + +I+ +++ + I D+ML Sbjct: 61 PGGYQPESVSAYNQAGVYEPSAGLVETSNVDLARQTVDMIQTSRAFEANVVTIRSQDQML 120 Query: 473 QTLLEG 478 TLL+ Sbjct: 121 GTLLDM 126 >gi|317129211|ref|YP_004095493.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus DSM 2522] gi|315474159|gb|ADU30762.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus DSM 2522] Length = 148 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 10/59 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPEN 49 MS+ N + + + + N+ NAD Y R+ + + Sbjct: 1 MSIFHGINTSASALTAQRLRMDVVSSNMANADTTRARLVDGEWQPYRRKMVVLEQNGSG 59 >gi|269836584|ref|YP_003318812.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus DSM 20745] gi|269785847|gb|ACZ37990.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus DSM 20745] Length = 154 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 MS+ + + + I NI N D + Y RR + T P Sbjct: 1 MSIFETMRVSMSGLTAQRLRMDVIASNIANVDTTRTPEGGPYRRRQVVFTAVPA 54 >gi|312794500|ref|YP_004027423.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876698|ref|ZP_07736678.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796538|gb|EFR12887.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|312181640|gb|ADQ41810.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 255 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 6/143 (4%), Positives = 21/143 (14%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F A++ + Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIE--VPGSQGAQQILYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + L + Sbjct: 119 NGAFTLNSRGELVTLDGFYVLGQ 141 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + Y VN +E+ +I V ++Y + K D+ LQ + Sbjct: 203 GRILQGYLEGSNVNSVQEMVDMISVLRAYEANQKAFTIQDETLQKAVN 250 >gi|23100411|ref|NP_693878.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] gi|22778644|dbj|BAC14912.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] Length = 276 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 76/281 (27%), Gaps = 7/281 (2%) Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 +S+++ + + N + + + S +T + N + Sbjct: 1 MSQMMIQAAVTMNQLQNKLDLIGNNMANSQTTGYKSRQAEFSSLLTQQVNNLTDPANAQG 60 Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 + G L ++ Q ++ L + V + Sbjct: 61 RLTPDGIRVGSGSRLGSTNMNLNQGAIQETNRDLDVALTSENLLFQVEVTENGQVGTRYT 120 Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379 DG L + + N + + L + Sbjct: 121 RDGSFYLSPMENGQMMLSTSDGNPVIGNNGPILIQDGFDSIEINEYGQLLVERNGQQAIE 180 Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 D + P +T L + + L N + + + Sbjct: 181 DQLSVVEAIRPRLLESTGQNLFQLPN--LEALGFNAEEIIQETNPQTAI---LQSKALEQ 235 Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ +E+S L+ ++ Y +++ I D+M+ L+ ++ Sbjct: 236 SNVDISKEMSDLLMTQRLYQFNSRTITMGDQMMG-LVNQIR 275 Score = 41.9 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 51/193 (26%), Gaps = 19/193 (9%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77 + I N+ N+ Y R + + + ++ + Q Sbjct: 16 QNKLDLIGNNMANSQTTGYKSRQAEFSS----------------LLTQQVNNLTDPANAQ 59 Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 L S N + + + + + V +N + + Sbjct: 60 GRLTPDGIRVGSGSRLGSTNMNLNQGAIQETNRDLDVALTSENLLFQVEVTENGQVGTRY 119 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 + + + + ++ L S+ + + F + ++ L +R+ Sbjct: 120 TRDGSFYLSPME---NGQMMLSTSDGNPVIGNNGPILIQDGFDSIEINEYGQLLVERNGQ 176 Query: 198 LQKISEIIGISTI 210 ++ + I Sbjct: 177 QAIEDQLSVVEAI 189 >gi|303327773|ref|ZP_07358213.1| putative flagellar basal-body rod protein [Desulfovibrio sp. 3_1_syn3] gi|302862134|gb|EFL85068.1| putative flagellar basal-body rod protein [Desulfovibrio sp. 3_1_syn3] Length = 133 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + N + N S A N+ N + + + + P V Sbjct: 1 MSGITGSMNLGASAMNAHSWGMAVTAHNVANVNTAGFAPQHAVYATGPGGRGVRLDAVLQ 60 Query: 60 KNMFDKVL 67 + L Sbjct: 61 DSGVAGRL 68 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 23/39 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 G +L E++ +I +++Y + +++ D ML TLL+ Sbjct: 94 GTDLGREMTQMISTQRTYEANAQVVRTGDAMLGTLLDLK 132 >gi|312876494|ref|ZP_07736477.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor lactoaceticus 6A] gi|311796705|gb|EFR13051.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor lactoaceticus 6A] Length = 147 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M + N + + + I +NI NA+ Y R+ + Sbjct: 1 MGMFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEE 51 >gi|257876010|ref|ZP_05655663.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC20] gi|257810176|gb|EEV38996.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC20] Length = 260 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 M++ + +++ N+ + NI N + Y + T Sbjct: 1 MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60 Query: 48 ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 ++ + + + L + + F +++ Sbjct: 61 NAAQYGASMGAKATTTTSFAQGNLAGTTQPLDLAIQGNGFFGVRDQTGQL------LLSR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 S N + T + + ++ + + + Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +N + N T + + +G + A+ + I A + + + Sbjct: 6 LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65 Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + F + L + + + N Q Sbjct: 66 GASMGAKATTTTSFAQGNLAGTTQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + + W + + + + T E Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 L + + + F + + V+L ++ L+ +++Y ++ K Sbjct: 184 ITPVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243 Query: 464 LIMFTDKM 471 + D+M Sbjct: 244 AMQTADEM 251 >gi|158422269|ref|YP_001523561.1| flagellar basal body rod protein FlgF [Azorhizobium caulinodans ORS 571] gi|158329158|dbj|BAF86643.1| flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 240 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/231 (6%), Positives = 51/231 (22%), Gaps = 2/231 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ A+I N+ N + Y + + + + Sbjct: 1 MSNGLYVALSGQMATEKRMATIANNVANMNTPGYRAEEIKFSSIMAEQGAKDIKFASTG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + I + + + + + + +++ Sbjct: 60 -ESYTSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSVNNYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + I + L + + N A+ A Sbjct: 119 VLDQGGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAVIPDKA 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + + + S + + + R + S + + Sbjct: 179 ATPVTDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAISQQETS 229 Score = 38.9 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 4/162 (2%) Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368 + P + +T R + G + + V + Sbjct: 63 TSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSVNNYPVLDQ 122 Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 G +I + G N TL + L++ + + + V Sbjct: 123 GGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAVIPDKAATPV 182 Query: 429 FN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + I + Y V+ E++ LI V++++ + + I Sbjct: 183 TDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAIS 224 >gi|297530608|ref|YP_003671883.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3] gi|297253860|gb|ADI27306.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3] Length = 150 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 12/34 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MSL N + + + I NI N D Sbjct: 1 MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34 >gi|332298513|ref|YP_004440435.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] gi|332181616|gb|AEE17304.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] Length = 265 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 22/233 (9%), Positives = 48/233 (20%), Gaps = 21/233 (9%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT------- 51 + N + +I N+ NAD Y R T++ P + V Sbjct: 6 YIGSSGMNAQQNRLDAISNNLANADTTAYKRDVTVSKSFPELLMRRMNDDGVYRTPFGSA 65 Query: 52 ----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 +V + + + Q E A Sbjct: 66 DAAPIVGKIGLGVETNELYTDFEQGSFKQTSSKADMALSGEGFFAVQTPAGERYTRNGNF 125 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167 E + + + + + Sbjct: 126 MIGKEGILETKEGYPVLGENGYIRVNDDSFTVNPDGMIYSADDMELIDRFKVVRFDNERY 185 Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + + K S +R +Q +E ++ + + + V Sbjct: 186 LQKMG-SSLYKNTDISGEAYIAEGKERPAFIQGYTETSNVNVVNEMVSMIEVN 237 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + Y+ T VN+ E+ +I+V ++Y + K I D M+ TL Sbjct: 216 QGYTETSNVNVVNEMVSMIEVNRAYEANQKTIQTEDTMMSTL 257 >gi|296274007|ref|YP_003656638.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis DSM 7299] gi|296098181|gb|ADG94131.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis DSM 7299] Length = 153 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMTTIS 46 M +N A + + + + NI NA Y +++ + Sbjct: 1 MGFFDGYNIASSGMSAQRTRINVVSANIANAKTTHSTDGGPYKKQNVVFQEM 52 >gi|315649858|ref|ZP_07902941.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315274832|gb|EFU38213.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + + VNL +E++ +++V+++Y + + + +D M+ L ++ Sbjct: 217 APGEPPKSSVLSGFVEQSNVNLTDEMTKMMEVQRAYQLMARALSSSDTMMN-LANTMR 273 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 15/50 (30%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 + A N Q+ I N+ N + Y +++ V Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFDDVLTQVQG 50 >gi|77918761|ref|YP_356576.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] gi|77544844|gb|ABA88406.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] Length = 245 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 41/182 (22%), Gaps = 3/182 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENK 60 + A + Q +I N+ N + + + ++ E V R Sbjct: 1 MNRGTYVALSGALVRQQLMDTISHNLSNNETVGFKKGQSVFKTMLERVQTGEILERVNLA 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLS 119 + + + + E + + LR E + N Sbjct: 61 EIEEGFTDFSQGTLSPSGIQTHMAIQGEGFFKVEDEAGNIYYTRQGNLRLDYEGHLINNQ 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L +F + +I L + L+ ++ Sbjct: 121 GMALLGEDRRPITLTSPDFTVDDDGTITLEDGQKIKIPLYTFDDYSVLTRQGGGQFSVPK 180 Query: 180 KT 181 Sbjct: 181 GQ 182 >gi|150019059|ref|YP_001311313.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905524|gb|ABR36357.1| flagellar basal body rod protein [Clostridium beijerinckii NCIMB 8052] Length = 256 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 48/221 (21%), Gaps = 15/221 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ F + + + NI N +N Y +R+ + + + Q+ Sbjct: 1 MIRGFYTSVSGLIALQNDQEVVTNNIANVNNTGYKKRELTKSSFEDVMISNRQKLVGDKY 60 Query: 63 FDKVLHA--------------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + A + F + N + Sbjct: 61 VKNDIGNLNMGVKVNDVETVFTQGAFKSTDSMTDFAIDGRGFFVAQNGNKEVYTRDGNFK 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + + Y + S + + + E + L Sbjct: 121 INNQGYLITNDGSQVLGINNSTGAREPIYVGDSKFSIDG-DNNINIEGVGAVDKLLTADF 179 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 + + I ++ + S + ST Sbjct: 180 QNYNNLEPIGDNYSTMDNPIYNAKVNVRQNFLESSNVDPST 220 >gi|312136040|ref|YP_004003378.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311776091|gb|ADQ05578.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 255 Score = 55.0 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 4/143 (2%), Positives = 21/143 (14%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKTSSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F ++ + + Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFTVE--VPESEGGQQVLYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + + + Sbjct: 119 NGAFTLNSRGELVTIDGFYVLGQ 141 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + Y VN +E+ +I V ++Y + K D+ LQ + Sbjct: 203 GKILQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQDETLQKAIS 250 >gi|86139479|ref|ZP_01058048.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193] gi|85823982|gb|EAQ44188.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193] Length = 130 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS + + + + + + NI NAD Y R+ + Sbjct: 1 MSEFSNSLSVTASGLKAQATRLRHVSENISNADTPGYRRKSVPFEAA 47 >gi|317133466|ref|YP_004092780.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471445|gb|ADU28049.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 234 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 1/149 (0%) Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 L + N + Sbjct: 79 SFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQPENGAAVLVDAQGRTVLDAQG 138 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442 N + + V V + +N + S + +Y T V Sbjct: 139 NAIAVQNGVPQTQPGVFAFAFPQNLTALGGSLFAASASSGAAQVSDEGVLQGAY-ETSNV 197 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +L E+ +I ++ + ++ +++ D++ Sbjct: 198 DLSSEMGNMIVTQRGFQMNARVVSTADQI 226 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 15/123 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV---------- 52 ++ F + I +I N + YV+RDT + + V Sbjct: 1 MIQAFFGGAASLRSRQTAMDVIANDIANVNTAGYVQRDTDFSDLLYDSMVRPENPSYANE 60 Query: 53 -----VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + S + + F A+++ + + + Sbjct: 61 LEGSGAGVDAVVADASAGSFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQPEN 120 Query: 108 RDS 110 + Sbjct: 121 GAA 123 >gi|15639945|ref|NP_219398.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026184|ref|YP_001933956.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|3323282|gb|AAC65916.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018759|gb|ACD71377.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060316|gb|ADD73051.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 271 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 30/145 (20%), Gaps = 34/145 (23%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46 A + + ++ +I +N+ N D +Y R R S Sbjct: 6 YTAASGMSAQQRRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSS 65 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V L S F ++ + Sbjct: 66 DVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEE------- 118 Query: 101 THYISKLRDSLESYSKNLSEDILGK 125 +E Y + + Sbjct: 119 YTRNGNFLVGVEGYLMTKNGYPVLG 143 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +++ S + + + + VN+ E+ +I+V ++Y + K I Sbjct: 199 TYMQTPVSGAPIAAEGPE--RPAAVQGFVEASNVNVVNEMVRMIEVNRAYEANQKTIQAE 256 Query: 469 DKMLQTLLE 477 D M+ L Sbjct: 257 DGMMGRLWN 265 >gi|188582487|ref|YP_001925932.1| flagellar basal body rod protein FlgF [Methylobacterium populi BJ001] gi|179345985|gb|ACB81397.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 246 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 10/191 (5%), Positives = 31/191 (16%), Gaps = 6/191 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + +++ I N+ N + R V + Sbjct: 1 MQNALFVGVSAQAALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 63 FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ + + A + + Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDGNPMHVALRGDAFLAVQTPQGVRYTRNGAFELNAQGNLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + A + + ++ + N Sbjct: 121 TSDGYAVQGDGGPITIGQQETGLSIAPDGTVSTNLGIRGRLRLVTFANPQALKSEGANLF 180 Query: 177 IKFKTASKHDA 187 A Sbjct: 181 SSDAPARAAGP 191 >gi|32477362|ref|NP_870356.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|32447913|emb|CAD77433.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|327537337|gb|EGF24070.1| flagellar basal-body rod protein FlgG [Rhodopirellula baltica WH47] Length = 268 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/256 (10%), Positives = 67/256 (26%), Gaps = 5/256 (1%) Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284 T + + ++ + + + V + V Sbjct: 17 QTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDSTQTPTAVGTQVGLGVRVT 76 Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 Q + G + G V D + L + + + Sbjct: 77 STQTDQRQGTLQQTGRDLDVAIQGGGYFRVVDPSSQDTMYTRAGNLDINANGELVMGSAQ 136 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 L D V + ++ + N +A LL+ Sbjct: 137 VG---RLLDPPITIPPDATAVVINSNGEVMVRQPGQTELTNQGQIQLAQFINPDGLLKNG 193 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N E + S ++ + + V +EL LI ++++ ++++ Sbjct: 194 ENLYS--ETDASGPEQINNPGTDGMGVLRQGNLEASNVEPVQELIDLITTQRAFELNSQA 251 Query: 465 IMFTDKMLQTLLEGVK 480 + D+++Q + + + Sbjct: 252 VQAGDQVMQNISQLRR 267 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 25/140 (17%), Gaps = 27/140 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48 MS+ A + I N+ N + + + Sbjct: 1 MSV-QTLYTAATGMEAMQTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDST 59 Query: 49 ------NVTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V D+ L + + + + ++ Sbjct: 60 QTPTAVGTQVGLGVRVTSTQTDQRQGTLQQTGRDLDVAIQGGGYFRVVD-----PSSQDT 114 Query: 100 PTHYISKLRDSLESYSKNLS 119 L + S Sbjct: 115 MYTRAGNLDINANGELVMGS 134 >gi|257866397|ref|ZP_05646050.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC30] gi|257873087|ref|ZP_05652740.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC10] gi|257800355|gb|EEV29383.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC30] gi|257807251|gb|EEV36073.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC10] Length = 260 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 M++ + +++ N+ + NI N + Y + T Sbjct: 1 MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60 Query: 48 ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 ++ + + + L + + F +++ Sbjct: 61 NAAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 S N + T + + ++ + + + Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +N + N T + + +G + A+ + I A + + + Sbjct: 6 LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65 Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + F + L + + + N Q Sbjct: 66 GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + + W + + + + T E Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 L + + + F + + V+L ++ L+ +++Y ++ K Sbjct: 184 ITPVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243 Query: 464 LIMFTDKM 471 + D+M Sbjct: 244 AMQTADEM 251 >gi|237752809|ref|ZP_04583289.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] gi|229376298|gb|EEO26389.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] Length = 277 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 16/198 (8%), Positives = 46/198 (23%), Gaps = 26/198 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VVTQ 55 + + + + I NI NA+ + R D + + Q Sbjct: 1 MQGGYYNSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIDEQ 60 Query: 56 RSENKNMFDKVLH---------AHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103 + +++ L+ + G +F + + M + + Sbjct: 61 TKDAAQFYNRSLNRVPQIVEEYTDNKVGGMMITDNTFDFALSKENMYFMVETPDGIRYTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + +A + + + D + +L Sbjct: 121 DGSFVLNEQGRLVTKEGYPVLPREYLDA-------PQYIEFIDGFQVEVDSNGNIYTRDL 173 Query: 164 RRFLSELTVVNDAIKFKT 181 + I + Sbjct: 174 NNEGISEMALMANIGVVS 191 >gi|163852465|ref|YP_001640508.1| flagellar basal body rod protein FlgF [Methylobacterium extorquens PA1] gi|163664070|gb|ABY31437.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] Length = 246 Score = 54.7 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/193 (4%), Positives = 28/193 (14%), Gaps = 6/193 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + +++ I N+ N + R V + Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 63 FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ ++ + Sbjct: 61 LSYVIDQGTPLDLTQGSVEPDSNPMHVALRGDAFLTVQTPQGLRYTRNGAFELDATGNLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A + + ++ + N Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFPNAQALKSEGANLF 180 Query: 177 IKFKTASKHDAHD 189 A Sbjct: 181 SSEAPARPAGPGA 193 >gi|332981429|ref|YP_004462870.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1 BON] gi|332699107|gb|AEE96048.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1 BON] Length = 129 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPEN-VTVV 53 M + N + + + I +NI NA+ + YVR+ + + S V V Sbjct: 1 MGMFDAINNSASGLTAQRLRMDIISQNIANANTTRTPEGGPYVRQMPVFSQSSSGMVQVQ 60 Query: 54 TQ 55 Sbjct: 61 AI 62 >gi|294679032|ref|YP_003579647.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] gi|294477852|gb|ADE87240.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] Length = 237 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 11/117 (9%), Positives = 29/117 (24%), Gaps = 3/117 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ Q+ + N+ N + + R + + +++ + + + Sbjct: 12 QSGLM---QEMQVVANNMANVNTTGFRREGVVFSEYVDSLDGDEASLSMAHASGRTIDFD 68 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 S A+ F E + + S E + Sbjct: 69 SGAVASTGNQLDFAIQGEGFFMIETPEGNQLTRAGSFLRSPEGELVTPEGFRVLDNG 125 >gi|302671950|ref|YP_003831910.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] gi|302396423|gb|ADL35328.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] Length = 277 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 70/269 (26%), Gaps = 19/269 (7%) Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264 + + T N + Y +G T + K + + I+ V Sbjct: 19 MDVLTNNLANANTNGYKKEGLTARAFSDQLALKIKDYTDAPNTARGLGIINPGVKIGESY 78 Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +G +K D + + E+D Sbjct: 79 VDWSEGPMKETKNTFDFAIGG--RGFFAVEYTNKAVNIERDTAGQMDVMYTRDGCFTMNV 136 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + G + +P+ L + + +A + Sbjct: 137 NGEITTQDGDYVLDDSGSHIQLDPN-LPVEIDTLGNVIQDGAVVAKIGVYDFEATTYPDG 195 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 +D + N + + + + + + + V++ Sbjct: 196 RISYDNLLHYGENFFIP----------AGDDAGAEVVENA------RVYSGFLEQSNVSV 239 Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +E+ +I +++Y+ + ++I D LQ Sbjct: 240 VDEMVNMIATQRNYDTNQRMITTIDDTLQ 268 >gi|294679035|ref|YP_003579650.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB 1003] gi|294477855|gb|ADE87243.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB 1003] Length = 131 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 15/52 (28%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55 + + + + S + + NI NAD Y R+ Sbjct: 5 TSTLSVSASGLKAQSMRLRHVSENIANADTPGYHRKVVRFEELAAQKDGGAT 56 Score = 38.5 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 G +E ++ + ++ + + Y + V+L E++ + ++SY + ++ T Sbjct: 61 GPVELDQKELARIYDPGSPLAD--ENGYYDGSNVDLVVEIADARQAQRSYEANLRMFDQT 118 Query: 469 DKMLQTLLEGVK 480 +M L+E ++ Sbjct: 119 RQMSSALMELLR 130 >gi|291059787|gb|ADD72522.1| flagellar basal-body rod protein FlgC [Treponema pallidum subsp. pallidum str. Chicago] Length = 152 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 25/81 (30%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI--------- 45 M L + N A + + I NI NA + + + R + Sbjct: 2 MGLFSGINIAATGMSAQRLRADVISDNIANASSTRTQEGGVFRRSRVVLAQKNPGIDWRI 61 Query: 46 ----------SPENVTVVTQR 56 V VV+ Sbjct: 62 PFVPEQLDRGVGTGVRVVSIE 82 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y V++ E+ LI ++Y + +I + +M Q LE + Sbjct: 98 DAILSGPKAGYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRALEIAR 152 >gi|163760754|ref|ZP_02167834.1| probable flagellar basal body rod protein [Hoeflea phototrophica DFL-43] gi|162282076|gb|EDQ32367.1| probable flagellar basal body rod protein [Hoeflea phototrophica DFL-43] Length = 112 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVV 53 + ++ N A + S++ +I N+ N D +Y R+ T + V V Sbjct: 2 ISSIINTAFSGMAAQSKRMDAIASNVANVDTPDYNRKTVEMVTTAGGGVRAV 53 >gi|227874517|ref|ZP_03992687.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268] gi|227839636|gb|EEJ50096.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268] Length = 305 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 36/135 (26%), Gaps = 8/135 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L + A + I NI N + + + + + + + + Sbjct: 1 MLRAMDSAVAGLRAHQNKLDVIGNNIANVNTFGFKSQGYSFKDTMYQTSSTSSGGKQEAS 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + A L S + +S Y+ S+ ++ Sbjct: 61 GNATIGGANPAQYGYGSLTG--------SIATDFTSSTPSYVGGFNASINGSGFFVTSAS 112 Query: 123 LGKTVIDNAEEVVQN 137 + +D A Sbjct: 113 NKEVTLDPANTKTTT 127 >gi|222112615|ref|YP_002554879.1| flagellar basal body rod protein [Acidovorax ebreus TPSY] gi|221732059|gb|ACM34879.1| flagellar basal body rod protein [Acidovorax ebreus TPSY] Length = 107 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRS 57 ++ A+ + A++ A + + N+ N + + R+ +P V T RS Sbjct: 7 TMTALASIARSGLQAAQLRLGTSAHNVANLNTPGFTRQVVDQQAAPAQGGVQARTGRS 64 >gi|261419417|ref|YP_003253099.1| flagellar basal body rod protein FlgC [Geobacillus sp. Y412MC61] gi|319766232|ref|YP_004131733.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52] gi|261375874|gb|ACX78617.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC61] gi|317111098|gb|ADU93590.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52] Length = 150 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 12/34 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MSL N + + + I NI N D Sbjct: 1 MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34 >gi|323704840|ref|ZP_08116417.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535766|gb|EGB25540.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 53/228 (23%), Gaps = 19/228 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPEN 49 +L A + + + NI N + Y + T P N Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTAGYKKDTVTTMAFPDYMVTRNGGDNVPYN 60 Query: 50 VTVVT------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + T + N N + + + F + + S T Sbjct: 61 GNIGTMDYGVLVETFNTNFSEGDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFTLN 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + Y + D + + N + + + V K+ Sbjct: 121 NNGYLVTKDGYYVLGQNGPIQLNNGDISVDESGNISVNGQVVDKLNIVDFANYNTLRKEG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 K + ++ D ++ IS + Sbjct: 181 NNLFFTTGGQAIPATSKVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228 Score = 40.0 bits (91), Expect = 0.78, Method: Composition-based stats. Identities = 23/255 (9%), Positives = 56/255 (21%), Gaps = 15/255 (5%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L +N ++ + + + D+V Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTAGYKKDTVTTMAFPDYMVTRNGGDNV--P 58 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + M ++ + G+ E G + + + Sbjct: 59 YNGNIGTMDYGVLVETFNTNFSEGDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFT 118 Query: 346 SNPSFLRDGGSVSKKFLWNVK---NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 N + N N + + + TL + Sbjct: 119 LNNNGYLVTKDGYYVLGQNGPIQLNNGDISVDESGNISVNGQVVDKLNIVDFANYNTLRK 178 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + + + Y VN +E+ +I ++Y + Sbjct: 179 EGNNLFFTTGGQAIPATS----------KVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228 Query: 463 KLIMFTDKMLQTLLE 477 K + D+ L + Sbjct: 229 KSVSAFDETLDKSVN 243 >gi|320535379|ref|ZP_08035493.1| flagellar basal-body rod protein FlgC [Treponema phagedenis F0421] gi|320147781|gb|EFW39283.1| flagellar basal-body rod protein FlgC [Treponema phagedenis F0421] Length = 152 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 26/82 (31%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN---YVRRDTMTTI-------- 45 M + + N A + + I NI NA + + + R + + Sbjct: 1 MGMFSSINIAATGMSAERLRTDVISDNIANASSTRTQEGEGPFKRSRVILSEKNPEVTWR 60 Query: 46 -----------SPENVTVVTQR 56 V VV+ Sbjct: 61 TPFVPDTIDKGVGTGVRVVSIE 82 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Y VN+ E+ LI ++Y + +I+ + +M Q LE + Sbjct: 105 NAGYVEYPNVNIVTEMVDLISASRAYEANASVILGSKEMFQRALEIGR 152 >gi|218531221|ref|YP_002422037.1| flagellar basal body rod protein FlgF [Methylobacterium chloromethanicum CM4] gi|218523524|gb|ACK84109.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 246 Score = 54.7 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/223 (5%), Positives = 39/223 (17%), Gaps = 6/223 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + +++ I N+ N + R V Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRTDRR 60 Query: 63 FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ + + A Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A + + ++ + N Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 A L+ + + ++ ++ ++ N + Sbjct: 181 SSEAPARPAGPGAHLEPGALERSNVKPVVEMTRLMDVNRTYSM 223 >gi|295697724|ref|YP_003590962.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413326|gb|ADG07818.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 273 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 17/132 (12%) Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV---TLLEYARNSIGWLEKNRSDSHDL 421 D N I ++ + T G L + L Sbjct: 137 PNGQLYTGDGYRVLAAGPNGQVIPGSSVALDASGAVHTYDGTGAEVFGGLAVLDAPVAAL 196 Query: 422 HMKSQVV--------------FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + V + + + V+ + + +I V ++Y + K+I Sbjct: 197 QKQGTGVYVLTPGAAGGLVPSLAQVRQGFLEQSNVDPGQTMVQMIDVVRAYEANQKVIRT 256 Query: 468 TDKMLQTLLEGV 479 D+ + L+ V Sbjct: 257 VDQSMDKLVNQV 268 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 5/45 (11%), Positives = 14/45 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47 ++ A + ++ + N+ NA Y + + Sbjct: 1 MIRGLYIAASGMIAQQRREEIVANNLVNASTPGYKQDEPSLRTFG 45 >gi|283850806|ref|ZP_06368092.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] gi|283573729|gb|EFC21703.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] Length = 260 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 42/218 (19%), Gaps = 22/218 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54 MS+ + A + + N+ N + Y R + +V Sbjct: 3 MSMYSALFGALS----TETRLNLSANNLANINTTGYKRDRVAFEDTFKRYAHDYHVDPRG 58 Query: 55 QRSENKNM-----------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 E + + + A+ + + Sbjct: 59 DLREKEIFPRADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S + + + + + V + + + N Sbjct: 119 NGAFHRSSQGMLVTDQDYPVLGNGGPIQIPDGRSFSVDATGAVYVDGGQVAQIDVVNVQN 178 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 + A T + A Q + Sbjct: 179 PDALRKYGANLYTAADGATVQEGPAEGGTTQVAQGYLE 216 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 12/188 (6%), Positives = 48/188 (25%), Gaps = 7/188 (3%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + + + S + + + + Sbjct: 69 ADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTRNGAFHRSSQG 128 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 G+ + + ++ + + V + L +Y Sbjct: 129 MLVTDQDYPVLGNGGPIQIPDGRSFSVDATGAVYVDGGQ---VAQIDVVNVQNPDALRKY 185 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 N + ++ +++ Y V + EE+ +I+ ++++ K Sbjct: 186 GANLY----TAADGATVQEGPAEGGTTQVAQGYLEKPNVEVVEEMVTMIETQRTFEAYQK 241 Query: 464 LIMFTDKM 471 ++ ++++ Sbjct: 242 VMTNSNEL 249 >gi|196249721|ref|ZP_03148417.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196210597|gb|EDY05360.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 273 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +L + A N N Q+ ++ NI N++ + RR+ Sbjct: 1 MLRSMHTAANTMNALQQRLDTLSHNIANSNTTGFKRREASFAELLT 46 Score = 50.8 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 66/255 (25%), Gaps = 4/255 (1%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TL + +E +D + + + +++ Sbjct: 21 TLSHNIANSNTTGFKRREASFAELLTQQVDHLPDDEAPRQTPAGMRYGNGAGLASTMLVT 80 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q L E R L +F+ + G N I + + Sbjct: 81 AQGPLTETGRALDFAFAAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGGRLALVTS-D 139 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 P + L+ L + + V I L Sbjct: 140 GRPVLDETNAPIELPAHATDFQLSPTGTLTATDANGVVVARVNLGVTVIRRPQLLEALGD 199 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + + + + V+L EEL L+ ++Y ++ + I Sbjct: 200 NFFTLPTAPGATQELNGNLRSQI--AMKQGALEQSNVDLGEELIGLMATTRAYQLNARAI 257 Query: 466 MFTDKMLQTLLEGVK 480 +++ML L+ ++ Sbjct: 258 SISEQMLG-LINNLR 271 >gi|303240290|ref|ZP_07326809.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus CD2] gi|302592200|gb|EFL61929.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus CD2] Length = 146 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45 M + + + + +I +NI NA+ Y R+ + Sbjct: 1 MGYFSSLDIGASGLTAQRLRMDTISQNIANANTTRTENGTAYRRKVVVFEE 51 Score = 39.2 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 15/39 (38%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 Y V++ E+ +I +SY + I T M Sbjct: 99 ENGYVEMPNVDILTEMVNMISATRSYEANVTSINTTKSM 137 >gi|304317904|ref|YP_003853049.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779406|gb|ADL69965.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 49/228 (21%), Gaps = 19/228 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTV--- 52 +L A + + + NI N + Y + V Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTSGYKKDTVTTMAFPDFMVTRSGGDNVPYN 60 Query: 53 ---------VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V + N N + + + F + + S T Sbjct: 61 GYIGNMDYGVLVETFNTNFSEGNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFTLN 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + Y + D + + N + + + V K+ Sbjct: 121 SNGYLVTKDGYYVMGQNGPIQLNNGDISVDDFGNISLNGQTVNKLNIVDFSNYSTLRKEG 180 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211 + ++ D ++ IS + Sbjct: 181 NNLFFTTGGQAIPASGAVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228 Score = 43.5 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 24/255 (9%), Positives = 56/255 (21%), Gaps = 15/255 (5%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L +N ++ + + + D+V Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTSGYKKDTVTTMAFPDFMVTRSGGDNV--P 58 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + M ++ + GN E G + + + Sbjct: 59 YNGYIGNMDYGVLVETFNTNFSEGNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFT 118 Query: 346 SNPSFLRDGGSVSKKFLWNVK---NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 N + N N + + + TL + Sbjct: 119 LNSNGYLVTKDGYYVMGQNGPIQLNNGDISVDDFGNISLNGQTVNKLNIVDFSNYSTLRK 178 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + + + Y VN +E+ +I ++Y + Sbjct: 179 EGNNLFFTTGGQAIPAS----------GAVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228 Query: 463 KLIMFTDKMLQTLLE 477 K + D+ L + Sbjct: 229 KTVSAFDETLDKAVN 243 >gi|23012978|ref|ZP_00052943.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 213 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 10/198 (5%), Positives = 29/198 (14%), Gaps = 11/198 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKN 61 + + + N+ N + R V R ++ Sbjct: 1 MNNTLLIGLSHQLALERAMEVAANNVANVTTTGFKSRSAEFREYLMPGARVEAARPSDRR 60 Query: 62 MFDKVLHAHSSAIGQQ--------RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + ++ + L + A + + Sbjct: 61 L--SYVVDAATPLDLSVGQIERTGSPLDVALRDENAFFAVQTSGGERYTRNGAFQLNAAG 118 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + T + + + Sbjct: 119 DLVTSDGYTVLGTAGPILFAKNTREISIGTDGTISTEQGPSGKLRLVQFADPERLVSAGG 178 Query: 174 NDAIKFKTASKHDAHDFL 191 N A Sbjct: 179 NLYQSSTPPRGAPASRLE 196 >gi|302387772|ref|YP_003823594.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198400|gb|ADL05971.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 256 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + GV+ +E++ +I+ +++Y+ + K++ +D++ + + ++ Sbjct: 209 VVKRALEESGVDFAQEMTRMIEAQRAYSYALKMVQTSDEV-EATINTLR 256 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 9/128 (7%), Positives = 34/128 (26%), Gaps = 13/128 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTV 52 + F + + N+ N + + + ++ + Sbjct: 1 MEQSFYIGALGALGQQTKLGIVSNNVANVNTVGFKAQYSVFSDLVHAEMRNTQGNNGAKS 60 Query: 53 VTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 + ++ + + F LK+ ++ + Y+ +S++ D Sbjct: 61 GSGTKVDQTKTDFSAMPYKETGLEHDYAIAGEGFFMLKDPVTGEVSYSRDGRFQLSRMED 120 Query: 110 SLESYSKN 117 + + Sbjct: 121 KFYLVNSD 128 >gi|300854231|ref|YP_003779215.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434346|gb|ADK14113.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 262 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 27/267 (10%), Positives = 66/267 (24%), Gaps = 21/267 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----------ENVT 51 +L + + N + SI N+ N+D Y + + + Sbjct: 1 MLRAIWNSVSAMNAQQDKLNSISNNLANSDTVGYKKENVEFNDLVYETLNRKGYPTNSNG 60 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDS 110 T + + I Q L + + Sbjct: 61 TNTINGTGVKATEWIRDNAQGPIQQTGLKTDMAIDGDGYFKVTLGNGTAAYERAGNFTVD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + L + + + + D + +++ + + + Sbjct: 121 RNGNLVDSNGNKLEVNLTAEGSSLFNS--------GTVFKDNNFKVDEKTGQIYMNVGNQ 172 Query: 171 TVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229 +V+ I A DA D + I + + G + + Sbjct: 173 SVLYGKINIYNAVGQDAMKSIGDNLYQPANNVQMNINTKAHIIQGSLEQSNVDLGREMTD 232 Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDG 256 + +FE + TS+ I+ Sbjct: 233 MIMAQRSFELASKGLTTSDEMWGLINS 259 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 75/247 (30%), Gaps = 15/247 (6%) Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + ++K N + G +SN + + +KA IRD+ Q + Sbjct: 31 TVGYKKENVEFNDLVYETLNRKGYPTNSNGTNTINGTGVKATEWIRDNAQGPIQQTGLKT 90 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 + G K + + ++ + SN + L Sbjct: 91 DMAIDGDGYFKVTLGNGTAAYERAGNFTVDRNGN---------------LVDSNGNKLEV 135 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 + L+N + + + + ++++ + Sbjct: 136 NLTAEGSSLFNSGTVFKDNNFKVDEKTGQIYMNVGNQSVLYGKINIYNAVGQDAMKSIGD 195 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 N + + HI + V+L E++ +I ++S+ +++K + +D+M Sbjct: 196 NLYQPANNVQMNINTKAHIIQGSLEQSNVDLGREMTDMIMAQRSFELASKGLTTSDEMWG 255 Query: 474 TLLEGVK 480 + + Sbjct: 256 LINSMKR 262 >gi|254503570|ref|ZP_05115721.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222439641|gb|EEE46320.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 243 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 58/221 (26%), Gaps = 7/221 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + S + ++ RN+ N + Y + + Sbjct: 1 MQSALYVALSAQVALSNRLETVSRNVANMNTAGYRADEINFAEMVSKAGPDKV--SFSSG 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSED 121 + + + ++ + E A N + +L S + K ++ Sbjct: 59 GENYISRQNGSLNKTDNPLDLAIEGEAWFAIRDANGGLSYTRDGRLHISDDGTLKTVTG- 117 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + V+ + +Q + D + E + + FL + Sbjct: 118 ---QVVVGAGGQPIQLNPDGGTPLITQNGDIIQGDEDIVGQIGLFLIPNDAKLTRKENSA 174 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 A + D + + G + ++ S Sbjct: 175 VVPDRAVIPVQVFDQHGIRQGYVEGANINPVREMTKMIMIS 215 >gi|126730135|ref|ZP_01745947.1| flagellar basal body rod protein [Sagittula stellata E-37] gi|126709515|gb|EBA08569.1| flagellar basal body rod protein [Sagittula stellata E-37] Length = 237 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 13/111 (11%) Query: 19 QQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSENKNMFDKVLHAHSS 72 ++ I NI NA+ + + + + +V++ R + L S Sbjct: 17 REMQVIANNIANANTTGFRQEGMIFSEYLSEGDRLDSVSMAAGRIHKTSFAQGELEPTGS 76 Query: 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 A E N S E + + Sbjct: 77 AYDLAIEG-------EGFFLVGTPNGERLTRAGAFSPSAEGLLVTPDGNPV 120 >gi|302874613|ref|YP_003843246.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690776|ref|ZP_07633222.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577470|gb|ADL51482.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 254 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 53/232 (22%), Gaps = 20/232 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54 ++ + + + + SI N+ NA+ Y + + Sbjct: 1 MIRALYTSLSGMISKEARMNSISNNLANANTVGYKSDDLILKSFDQVLLENRGKKNGEAH 60 Query: 55 QR------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 R S + + + + L + + N Sbjct: 61 VRNELGGLSLGVELDETYTDYNQGTLESTDSQTDLAILGDGFFTVERNGNKFYTRDGNFS 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + Y N D L + + V + K + Sbjct: 121 VDPQGYMVNSKGDYLLGNNGNRIYVANGKIDVKDNGVLTVDNGNTKVAY------NLDVV 174 Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + N ++ + + + Q+ E ++ + M VY Sbjct: 175 DFADKNTLVRNGDNLYSGGNPTAATKFNVKQRALEKSNVNVVNGMIEMMSVY 226 >gi|307945665|ref|ZP_07661001.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] gi|307771538|gb|EFO30763.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] Length = 246 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 10/173 (5%), Positives = 34/173 (19%), Gaps = 7/173 (4%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT--QRSENKNMFDKV 66 A + + Q + N+ N + + + + V T R ++ + + Sbjct: 7 IALSRQSALRNQLNVVANNMANINTGGFKAQRLLFEEYVMPVAEATEFNRRDHDLFYVQD 66 Query: 67 LHAHS----SAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLSED 121 + +I + + ++ Sbjct: 67 YGTRTEFMPGSIKLTGNELDIAIEGDGFFVVQTADGGEAYTRNGGFTLDEAGQLVTPNDK 126 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + +R+ + ++ N Sbjct: 127 PVLTEGGPINFTTADGKIDISRDGTISTELGVRGRIRVVNFDNPQNLVQMGDN 179 >gi|259417635|ref|ZP_05741554.1| flagellar basal-body rod protein FlgC [Silicibacter sp. TrichCH4B] gi|259346541|gb|EEW58355.1| flagellar basal-body rod protein FlgC [Silicibacter sp. TrichCH4B] Length = 130 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS + + + + + + NI NAD Y R+ Sbjct: 1 MSDFSKSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQAV 47 >gi|99082804|ref|YP_614958.1| flagellar basal body rod protein FlgC [Ruegeria sp. TM1040] gi|99039084|gb|ABF65696.1| Flagellar basal-body rod protein flgC [Ruegeria sp. TM1040] Length = 130 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 MS + + + + + + NI NAD Y R+ Sbjct: 1 MSDFSKSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQSV 47 >gi|146296278|ref|YP_001180049.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409854|gb|ABP66858.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 146 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M + N + + + + I +NI NA+ Y R+ + Sbjct: 1 MGMFDAINISASALHAQRVRMDVIAQNIANANTTRTEDGTPYRRKIVVFEE 51 Score = 36.9 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 20/46 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Y N V++ E+ +I+ ++Y + + T M+ + E Sbjct: 99 QNGYVNYPNVDIVTEMVNMIEASRAYEANVTAMNITKSMITRIFEI 144 >gi|220929470|ref|YP_002506379.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum H10] gi|219999798|gb|ACL76399.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum H10] Length = 147 Score = 54.3 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M + + + + + + +I +NI NA+ Y RRD + Sbjct: 1 MGIFSALDISASGLTAQRVRMDTISQNIANANTTRTTDGTPYRRRDVVFEE 51 >gi|260886629|ref|ZP_05897892.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|330839539|ref|YP_004414119.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|260863772|gb|EEX78272.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|329747303|gb|AEC00660.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] Length = 147 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 MS+ + + + + I NI NA+ + Y RR + Sbjct: 1 MSMFGGIDASASGLTAERLRMDVISNNIANANTTRSVEGGPYHRRYVVFQ 50 Score = 37.3 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y +N+ +E+ +I ++Y + I M Q L Sbjct: 101 DGYVERPNINIVQEMVDMITASRAYEANVTAINAAKGMAQNALNI 145 >gi|297570257|ref|YP_003691601.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296926172|gb|ADH86982.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 118 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + VV + V+L +E+ L+ + Y + K++ D Sbjct: 48 GTVEPRAEKIETPGPVVQEQTAAGPEMVEKSNVDLAQEMPNLMLSRRYYQANLKVVQSED 107 Query: 470 KMLQTLLEGV 479 + L +LL Sbjct: 108 ERLGSLLNIK 117 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 16/50 (32%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 ++ + A + Q+ A+ N N + Y + TV Sbjct: 1 MVTGIHSALSGLLALQQKTAATAHNTANVNTDGYKKVRVTLHEGVAPGTV 50 >gi|323490140|ref|ZP_08095360.1| flagellar basal body rod protein FlgC [Planococcus donghaensis MPA1U2] gi|323396188|gb|EGA89014.1| flagellar basal body rod protein FlgC [Planococcus donghaensis MPA1U2] Length = 151 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 10/58 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KN----YVRRDTMTTISPE 48 MSL FN + + + + NI NA+ Y R+ + S Sbjct: 1 MSLFTGFNISSSGLTANRLRMDVVSANIANANTNRAELVDGEWMPYRRKTVELSQSGT 58 >gi|225850286|ref|YP_002730520.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] gi|225645268|gb|ACO03454.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] Length = 238 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/183 (8%), Positives = 43/183 (23%), Gaps = 2/183 (1%) Query: 20 QFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77 Q + N+ N + + + M+ PEN D + A+ + Sbjct: 21 QLDTTSNNLANVNTPGFKKLLMREMSQTIPENKGNKKHLFVFPRFQDTPVILSQGALKKT 80 Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 + + + Y + + + L + + Sbjct: 81 DNPLDIAIFGSGFFTIETGQGVFLTRSGHFLLNSDGYIVDPNGNYLLDREGKRIKLEESS 140 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197 T + + + ++ + + A FL+Q + Sbjct: 141 GITVNQNGEIFQKGKKVARINIVNYENIRHIGHSYYQGEGQEVPADYSLKQGFLEQSNTN 200 Query: 198 LQK 200 + Sbjct: 201 GIE 203 >gi|87306342|ref|ZP_01088489.1| FlgF [Blastopirellula marina DSM 3645] gi|87290521|gb|EAQ82408.1| FlgF [Blastopirellula marina DSM 3645] Length = 255 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 Y GVN E+ +I+ +++Y + LI D+ML L+ V Sbjct: 203 QTRAGYLEGSGVNSITEMMTMIEAQRAYEANVNLIKNHDEMLGNLISRV 251 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/133 (7%), Positives = 27/133 (20%), Gaps = 30/133 (22%) Query: 20 QFASIVRNIENADNKNYVRRDTMTTI--------------------SPENVTVVTQRSEN 59 + + NI N D + R + V V + Sbjct: 18 RVEVLANNIANVDTTGFKRDLAVLQARYSQAIEDGKDYPNSGSINDVGGGVYVSE---KV 74 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + VL + F + + + + + + Sbjct: 75 TDYSRGVLKGTNVPTDLAIAGDGFFQV-------EIDGETYLTRAGNFTFTADGALVTPA 127 Query: 120 EDILGKTVIDNAE 132 + + + + Sbjct: 128 GNAVLDAEGEPVQ 140 >gi|326204628|ref|ZP_08194484.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens DSM 2782] gi|325985195|gb|EGD46035.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens DSM 2782] Length = 147 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M + + + + + + +I +NI NA+ Y RR+ + Sbjct: 1 MGIFSALDISASGLTAQRVRMDTISQNIANANTTRTADGTPYRRREVVFEE 51 >gi|225871945|ref|YP_002753399.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225791437|gb|ACO31527.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 262 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/214 (9%), Positives = 52/214 (24%), Gaps = 3/214 (1%) Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 G ++ + + + ++ + + F D Sbjct: 51 TPGAAQSQQAVSAGLQIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGT 110 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 + + + Q L + V + Sbjct: 111 LAYTRAGNFYLNNQGQVVDPQGDLLIPNITVPQNATAVTITQYGVVNATLPGQQNPQQLG 170 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYSNTVGVNLQE 446 +A L N +L S + L Q + + Y V++ Sbjct: 171 QIQLATFVNPGGLESTGSN--DYLATLSSGNAVLGNPGGQQGLGTLQQGYLENSNVDVVG 228 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ +++Y ++K+I D M + V+ Sbjct: 229 AFVQMVLAQRAYESNSKVIKAADGMYSEVNNMVQ 262 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/234 (7%), Positives = 51/234 (21%), Gaps = 17/234 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + + +I N+ N+ + R V ++++ Sbjct: 1 MIRALYTAASGMSAQQMNLDTIANNLANSSTVGFRERQLQFQDMIYQNLVTPGAAQSQQA 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLR 108 L + Q + Sbjct: 61 VSAGLQIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGTLAYTRAGNFY 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + D+L + + + + + + Sbjct: 121 LNNQGQVVDPQGDLLIPNITVPQNATAVTITQYGVVNATLPGQQNPQQLGQIQLATFVNP 180 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 E T ND + ++ + Q+ + + + + V +V Sbjct: 181 GGLESTGSNDYLATLSSGNAVLGNPGGQQGLGTLQQGYLENSNVDVVGAFVQMV 234 >gi|159045791|ref|YP_001534585.1| flagellar basal body rod protein FlgF [Dinoroseobacter shibae DFL 12] gi|157913551|gb|ABV94984.1| flagellar basal-body rod protein FlgF [Dinoroseobacter shibae DFL 12] Length = 238 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 10/120 (8%), Positives = 21/120 (17%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67 A + N ++ I NI N Y + + + + K+ Sbjct: 6 YTALSRQNALKREMTVIANNIANISTTGYRAEGLVFSEYVQATGHGQASISMTDSGAKIT 65 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + + Q + L Sbjct: 66 NYSQGMLRQTGGSFDMAIEGDGFFQVAAPEGVRLTRAGAFEPDANGLLVTPDGYQLLDAG 125 >gi|289523576|ref|ZP_06440430.1| flagellar basal-body rod protein FlgC [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503268|gb|EFD24432.1| flagellar basal-body rod protein FlgC [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 136 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M L A + I +N+ N + Y R+ + Sbjct: 1 MRLFDSLEIAGSSLTAHRLWMDLISQNLANVNTTRTQDGGPYRRKVPIFAE 51 >gi|296534159|ref|ZP_06896653.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296265514|gb|EFH11645.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 248 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 19/127 (14%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSE 58 + + A++ NI NAD Y + V R+ Sbjct: 9 LSRLAAQQRATAALAMNIANADTPGYKSAQMVFGAHIDRQLGVDAPRGGREVAFSQDRAT 68 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 ++ L A + + E A N + S E ++ Sbjct: 69 WRDFTPGSLQATGNPLDLALGG-------EGFFAVQTGNGERYTRAGRFALSPEGGIVDI 121 Query: 119 SEDILGK 125 + + Sbjct: 122 GGNPVLN 128 >gi|147678402|ref|YP_001212617.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274499|dbj|BAF60248.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 264 Score = 54.3 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/192 (8%), Positives = 41/192 (21%), Gaps = 30/192 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + S+ N+ NA Y R D Sbjct: 1 MIRGLYSAAAGMDVLQARVESVSNNLANASTPGYKREDITIRSFPEMLLIRQGGIQRKPA 60 Query: 44 ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 V + L +F A+ + + Sbjct: 61 GTPEAIGTASNGVLLSELFIDHTQGDLRETGDPADVAIKGPAFFAV--SAPGPESPDRVC 118 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVID------NAEEVVQNFNTSAREVQKIRADADK 154 + E Y + + + + + V+ +A + Sbjct: 119 YTRNGAFKIDQEGYLVTAGGYRVLGEDGEIRIEDFQLNDPARLSISPDGSVRIDGMEAGR 178 Query: 155 EIELEISNLRRF 166 + +E ++ Sbjct: 179 LMLVEFDDVNSL 190 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V + + + Y VN+ +E+ LI ++Y + ++I D++L + V Sbjct: 208 AVSSSVCQGYLEAPNVNVVDEMVSLITATRAYEANQRIIQSQDELLAKAVNQV 260 >gi|257871308|ref|ZP_05650961.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2] gi|257805472|gb|EEV34294.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2] Length = 260 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 41/172 (23%), Gaps = 23/172 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------- 44 M++ + +++ N+ + NI N + Y + T Sbjct: 1 MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60 Query: 45 -ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + ++ + + + L + + F +++ Sbjct: 61 NTAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 S N + T + + ++ + + + Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 5/248 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +N + N T + + +G + A+ + I A + + + Sbjct: 6 LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNTAQY 65 Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + F + L + + + N Q Sbjct: 66 GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + + W + + + + T E Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 L + + F + + V+L ++ L+ +++Y ++ K Sbjct: 184 ITPVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLVQSTVDLATSMTDLLTTQRAYGLNTK 243 Query: 464 LIMFTDKM 471 + D+M Sbjct: 244 AMQTADEM 251 >gi|296133051|ref|YP_003640298.1| flagellar basal-body rod protein FlgC [Thermincola sp. JR] gi|296031629|gb|ADG82397.1| flagellar basal-body rod protein FlgC [Thermincola potens JR] Length = 145 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M + F+ + + + I NI N + Y R+ + Sbjct: 1 MGMFDSFDISASGLTAQRLRMDLISENIANVNTTRTASGGPYRRKLAVFEA 51 Score = 41.6 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Y VN+ E+ +I ++Y + I T +M +E + Sbjct: 99 QGYVEMPNVNIVTEMVDMISATRAYEANVASIRATKEMFAKAMEIGR 145 >gi|315121852|ref|YP_004062341.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495254|gb|ADR51853.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 243 Score = 53.9 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 9/121 (7%), Positives = 35/121 (28%), Gaps = 1/121 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-QRSENKN 61 + + FN + ++ +++ NI N++ + + ++ Q+ Sbjct: 1 MQSSFNIGLSAQIALEKRLSTVADNISNSNTSGFRAIKVKFSEVINSIKNDIDQKISFVA 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 ++ L + ++ F + + + + + + S Sbjct: 61 QGNEYLSKQNGSLTNTGGELDFALEGDAWFSLQTPRGIILTRDGRFKIREDGTLISSSGR 120 Query: 122 I 122 Sbjct: 121 Y 121 >gi|182412222|ref|YP_001817288.1| hypothetical protein Oter_0398 [Opitutus terrae PB90-1] gi|177839436|gb|ACB73688.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1] Length = 249 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 23/250 (9%), Positives = 63/250 (25%), Gaps = 8/250 (3%) Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289 ++ + TV + G + S P G++++ + Sbjct: 7 QSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSEAGVPTL 66 Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349 ++ + E P + + ++ D + V Sbjct: 67 FPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQVRRPDGSFAYTRNGEFHVRADRTLVTG 126 Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409 + + + + N + V N L+ Sbjct: 127 TGDEVLNAGGGPITFLPNGDQVAINTDGSIFQGETPVANMSVQRFADNAQLIPMPNGYFV 186 Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 ++ + + Y V E+ L+ + ++Y + ++I D Sbjct: 187 PAAGMAPEAVTQPE--------LLQGYLENSNVTPLREMVDLVIISRAYEANQRMITTLD 238 Query: 470 KMLQTLLEGV 479 + +Q L+ + Sbjct: 239 QQMQKALDML 248 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 12/216 (5%), Positives = 42/216 (19%), Gaps = 22/216 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 + ++ + + + ++ +NI ++ Y +R + P R + Sbjct: 1 MNIGLYQSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSE 60 Query: 62 ---------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 F + + + Sbjct: 61 AGVPTLFPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQV------RRPDGSFAYTRNGE 114 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + + D + + + I + + Sbjct: 115 FHVRADRTLVTGTGDEVLNAGGGPITFLPNGDQVAINTDGSIFQGETPVANMSVQRFADN 174 Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + + N +A + L+ + Sbjct: 175 AQLIPMPNGYFVPAAGMAPEAVTQPELLQGYLENSN 210 >gi|254562217|ref|YP_003069312.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|254269495|emb|CAX25461.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 246 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 10/186 (5%), Positives = 28/186 (15%), Gaps = 6/186 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + +++ I N+ N + R V + Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 63 FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ + + A Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A + + ++ + N Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180 Query: 177 IKFKTA 182 A Sbjct: 181 SSEAPA 186 >gi|253682153|ref|ZP_04862950.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561865|gb|EES91317.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 262 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 11/166 (6%), Positives = 34/166 (20%), Gaps = 31/166 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L +++ + +I N+ N+ Y R D Sbjct: 1 MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V +N L ++ + + + + + Sbjct: 61 GKLQVTGGGVKSTEIERDN---AQGNLLQTNNNTDLAIDGKGYFKVVD------GEGRTL 111 Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + L + + + Sbjct: 112 YTRGGSFNIDPSGTVVDKNGNRLVILNENGIDVNTGRAGFTKESFN 157 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 78/253 (30%), Gaps = 6/253 (2%) Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + G I+ NS TV + + + ++ + P K + LQ+ Sbjct: 6 WNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQGKLQV 65 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 V + + D L+ + + D + + L + + Sbjct: 66 TGGGVKSTEIERDNAQGNLLQTNNNTDLAIDGKGY--FKVVDGEGRTLYTRGGSFNIDPS 123 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N + + + + + Y S + P+ + Sbjct: 124 GTVVDKNGNRLVILNENGIDVNTGRAGFTKESFNVSEDGYLRSDKHRGLRIPIYDTIGDN 183 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 ++ N L + +D+ + + ++ V+L +E++ LI ++++ Sbjct: 184 SMKSIGENLYTPL-IQGNGRNDVIESKDF---SLLQGFTEQSNVDLGKEMTDLIVTQRAF 239 Query: 459 NISNKLIMFTDKM 471 +++ + D+M Sbjct: 240 QLNSSALKTADEM 252 >gi|218508323|ref|ZP_03506201.1| probable flagellar basal body rod protein [Rhizobium etli Brasil 5] gi|327191050|gb|EGE58103.1| putative flagellar basal body rod protein [Rhizobium etli CNPAF512] Length = 100 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 MS+ + N A + + +I N+ N+ Y R +T T + V Sbjct: 1 MSISGITNIALSGMRAQMTRIGAIANNVANSSTPGYARLNTSLTSTEPGVQA 52 Score = 40.8 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR-SDSHDLHMKSQVVFNHISESYSNTVGV 442 ++G+ +T + N++ + + ++ I E T V Sbjct: 4 SGITNIALSGMRAQMTRIGAIANNVANSSTPGYARLNTSLTSTEPGVQAIVEPT--TSDV 61 Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + EL+ +I+ EQ+Y + + M + L+ + Sbjct: 62 DPATELTEMIEAEQAYKANAAVFETGADMWEMLMSIKR 99 >gi|212640499|ref|YP_002317019.1| flagellar basal body rod protein [Anoxybacillus flavithermus WK1] gi|212561979|gb|ACJ35034.1| Flagellar basal body rod protein [Anoxybacillus flavithermus WK1] Length = 262 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/247 (6%), Positives = 51/247 (20%), Gaps = 44/247 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------------------------- 37 + A + + ++ + NI NA+ Y Sbjct: 1 MFRGLYTAASGMLSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTE 60 Query: 38 -----RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92 R T V V N + + + + + + Sbjct: 61 KKLTWRDRTYIGPLSTGVYVQE---LVPNFAQGDIRETGNNTDMAIVDGTGTS---FFTV 114 Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS--------ARE 144 + + + + + + + F + Sbjct: 115 QNETGEVRYTRNGHFTIDADGFLTTTDGLYVLDETGNRIQVGDEQFTVLEDGTITKNGGQ 174 Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + ++R + ++ + + A + +H +D + +S Sbjct: 175 IARLRIAYAENVQTLMKEGNGLFRAEQQLPPAETYTIRQQHIERSNVDLSRTMTDMLSAY 234 Query: 205 IGISTIV 211 Sbjct: 235 RAFEANQ 241 Score = 41.9 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 17/253 (6%), Positives = 64/253 (25%), Gaps = 12/253 (4%) Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 + + + + + ++ G + ++A ++ + ++ Sbjct: 5 LYTAASGMLSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTEKKLT 64 Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 ++ A G + Sbjct: 65 WRDRTYIGPLSTGV-YVQELVPNFAQGDIRETGNNTDMAIVDGTGTSFFTVQNETGEVRY 123 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 + + F + D + ++ N+ + D + + T+ + Sbjct: 124 TRNGHFTIDADGFLTTTDGLYVLDETGNRIQVGDEQFTVLEDGTITKNGGQIARLRIAYA 183 Query: 416 SDSHDLHMKSQVVFN-----------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 + L + +F I + + V+L ++ ++ +++ + K+ Sbjct: 184 ENVQTLMKEGNGLFRAEQQLPPAETYTIRQQHIERSNVDLSRTMTDMLSAYRAFEANQKI 243 Query: 465 IMFTDKMLQTLLE 477 + DK + Sbjct: 244 LQAYDKSMDKAAN 256 >gi|188586015|ref|YP_001917560.1| flagellar basal-body rod protein FlgC [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350702|gb|ACB84972.1| flagellar basal-body rod protein FlgC [Natranaerobius thermophilus JW/NM-WN-LF] Length = 146 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISP 47 + F+ + + + I NI NA+ Y R+ + Sbjct: 1 MFDTFDISGSGLTAERLRMDVISNNIANANTTRTEDGEPYRRQMPVFETRG 51 >gi|119384843|ref|YP_915899.1| flagellar basal body rod protein FlgC [Paracoccus denitrificans PD1222] gi|119374610|gb|ABL70203.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222] Length = 130 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%) Query: 3 LLAVFNK---AQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43 + + A + + + + I NI NAD Y R+ Sbjct: 1 MTNSLSATELAVSGMKSQAVRLRHISENIANADTPGYRRKLVAF 44 >gi|289578436|ref|YP_003477063.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter italicus Ab9] gi|297544712|ref|YP_003677014.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528149|gb|ADD02501.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter italicus Ab9] gi|296842487|gb|ADH61003.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 147 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 M+L + + + + + I +NI N + Sbjct: 1 MNLFSSMDISASGLTAERVRMDVISQNIANVNTT 34 Score = 39.2 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ +I ++Y + + M Q LE + Sbjct: 99 QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSLEIGR 146 >gi|15616299|ref|NP_244604.1| flagellar hook-basal body protein [Bacillus halodurans C-125] gi|10176361|dbj|BAB07456.1| flagellar hook-basal body protein [Bacillus halodurans C-125] Length = 280 Score = 53.9 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 3/153 (1%) Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 ++ + + G ++ + L L + N Sbjct: 128 TANPNNDNLLQLVTQNGDYLLDSAGNRINIPATFEEITLTDQGTLQVTMPNGANVQAAQL 187 Query: 390 PVAGINTNVTLLEYARNS--IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447 + + L N + L ++++ + + V++ E Sbjct: 188 QLIQVMKPQLLEAVGGNMFQLPDLAALGFAENEVYAAVGAGGGAVVQGTLEGSNVDIGRE 247 Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 ++ LI+ +++Y + + + D+M+ L+ G++ Sbjct: 248 MTDLIETQRNYQFNARSVSMADQMMG-LVNGLR 279 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/178 (8%), Positives = 51/178 (28%), Gaps = 26/178 (14%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVTQRSE 58 ++ ++ NI N++ Y RR+ + +P + V + Sbjct: 16 QKKLDTLSHNIANSNTTGYKRREASFSDLLFQQVNTNKATQYETGRLTPNGIRVGSGAKV 75 Query: 59 NKNMFD-KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 ++ + ++ + + + E+ + D + + N Sbjct: 76 SQTALRMEQGTLTTTDRALDFAIANPSSFFEIETVVDGNPVTRLTRDGAFY-----LTAN 130 Query: 118 LSEDILGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + D L + V N + ++ + + L+++ + + Sbjct: 131 PNNDNLLQLVTQNGDYLLDSAGNRINIPATFEEITLTDQGTLQVTMPNGANVQAAQLQ 188 >gi|167463160|ref|ZP_02328249.1| flagellar basal-body rod protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383080|ref|ZP_08056907.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152742|gb|EFX45368.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 297 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 38/150 (25%), Gaps = 15/150 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI N + Y + ++ RS + + Sbjct: 1 MLRGLYTASSGMIAQQRKHDTATNNIANMNTPGYKQSTALS------------RSFPEML 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + RL + + + ++ S + Sbjct: 49 ISRFRDDETGTQQVGRLHTGVLMEENVAI---PVQGVIEETRNPFDFAIVSDLQVPGAAF 105 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 G + N + + V+ + Sbjct: 106 NGAGIYVNEDGETIYKPQAYFMVENQAGEI 135 Score = 39.2 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + + V+ + + ++ ++Y + K++ F DK L+ + Sbjct: 247 IRQGFVEQSNVDPTQVMVDMMSALRAYEANQKMVQFYDKSLEKTVN 292 >gi|254519397|ref|ZP_05131453.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] gi|226913146|gb|EEH98347.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] Length = 257 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 16/113 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49 +L + N + +I NI N+ Y + D + Sbjct: 1 MLRTLWTGKTGMNANQDKLDAISNNIANSTTMGYKKIDVGFKDLLTESLDRNGIPLNDKD 60 Query: 50 VTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 + T ++ D L + + + + + + Sbjct: 61 SVIGTGTRTSEWFRDNSQGMLQETLRSTDLSIDGLGYFKIISDNGQEAYTRDG 113 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + I + V++ E S +I ++++ +S++ + D+M + Sbjct: 199 EVQRTTDFDIYQGSLEGSNVDIATEFSEMILTQRAFELSSRGVKTADEMWGMINNM 254 >gi|149183417|ref|ZP_01861850.1| FlhP [Bacillus sp. SG-1] gi|148848862|gb|EDL63079.1| FlhP [Bacillus sp. SG-1] Length = 278 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 27/299 (9%) Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 + + + Q D++ ++ R + + L + Sbjct: 7 GATNTLNQLQKQMDIIGHNLANSDTNGYKRREAMFSELLFQQVSNLKGEKDANTRLTP-- 64 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 I + + +G +KA + D + + + G+ Sbjct: 65 --------GGIRQGVGAKLAQSEINLAQGALKATGRSLDFALTSRNQFFKVLVQGEDGAD 116 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 P + + ++ + N + G S Sbjct: 117 VRYTRDGA-FYANPIGNGEMMLVNGQGHAVLDENDNFITFTEAEMNSQDISLGDSGQLTI 175 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 NL + +N + P V E + G L N Sbjct: 176 GGTPFNLGIVSVEKPQFMQQVGQNLLGLPDDLQGFGVNENEILTSLEGALRDNIG----- 230 Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 +++S V++ +E++ ++ V+++Y ++ I D+M+ L+ G++ Sbjct: 231 ----------LAQSTLEGSNVDIGKEMTDMLNVQRAYQFQSRSISMADQMMG-LINGIR 278 Score = 43.5 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + A N N +Q I N+ N+D Y RR+ M + Sbjct: 1 MNRTMIGATNTLNQLQKQMDIIGHNLANSDTNGYKRREAMFSEL 44 >gi|183220163|ref|YP_001838159.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910283|ref|YP_001961838.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774959|gb|ABZ93260.1| Endoflagellar proximal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778585|gb|ABZ96883.1| Flagellar basal-body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 153 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 7/51 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44 M + N + + + I NI N+ + + R + T Sbjct: 1 MGMFDSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVILT 51 Score = 37.7 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%) Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y +N+ E++ +I +SY + +LI + M+ +E + Sbjct: 107 GYVELPNINIVTEMTDMISASRSYEANVQLINGSKAMMNKAMEIGR 152 >gi|319781687|ref|YP_004141163.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167575|gb|ADV11113.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 53.5 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 16/205 (7%), Positives = 47/205 (22%), Gaps = 2/205 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ +I N+ NA + + + Sbjct: 1 MRDSLYVALSSQIALERRLDTIADNVANASTIGFRATGVKFEDVVSGTGQKSVSFASPG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L A+ + F + A + + + + ++ Sbjct: 60 -KTYLSGAHGALSETGNPFDFAIQGDAWFAIETPVGTVMTRDGRFSMNENGELMSIEGHP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + +N A +R + + + N + + N I Sbjct: 119 VLDAGGSPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGANFVRYGNSGIVPART 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207 + + S + + Sbjct: 179 PEPVTDRSDIGVAQGFLEESNVNPV 203 >gi|121533765|ref|ZP_01665592.1| flagellar basal-body rod protein FlgC [Thermosinus carboxydivorans Nor1] gi|121307756|gb|EAX48671.1| flagellar basal-body rod protein FlgC [Thermosinus carboxydivorans Nor1] Length = 143 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M L + A + + I NI NA+ + Y R+ + Sbjct: 1 MGLFTAIDAAASGMTAERLRMDVISNNIANANTTRTPEGGPYRRQMVIFQ 50 Score = 38.5 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 5/82 (6%) Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-----HISESYSNTVGVNLQEELS 449 + + + + + VF+ + Y VN+ E+ Sbjct: 53 AGQNSFADLLSGKVENVGVRVVGIVKDEAPFRQVFDPNHPDANAAGYVAMPNVNIIAEMV 112 Query: 450 FLIKVEQSYNISNKLIMFTDKM 471 ++ ++Y + I M Sbjct: 113 DMMTAARAYEANVTAINAAKSM 134 >gi|121534935|ref|ZP_01666754.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] gi|121306534|gb|EAX47457.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] Length = 247 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + VN+ E+ LI ++Y I+ K++ D++L + Sbjct: 195 GQVRQGVLELANVNVVAEMVNLIAGYRAYEINAKMVQTHDQLLDKAVN 242 >gi|116252321|ref|YP_768159.1| hypothetical protein RL2575 [Rhizobium leguminosarum bv. viciae 3841] gi|115256969|emb|CAK08063.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 101 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59 MS+ + + A + + + ++I NI N+ Y R +T T P V V + + Sbjct: 1 MSISGIASTALSGMRAQTTRVSAIANNIANSSTPGYARLNTSLTSVEPGGVQAVVSPTAS 60 Query: 60 K 60 Sbjct: 61 D 61 >gi|306820111|ref|ZP_07453759.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551889|gb|EFM39832.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 145 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43 MS+ + N + I +NI NA Y R+ + Sbjct: 1 MSIFSGMNINATALTAERLRMDIISKNIANAQTTRTKNGLPYKRQVAVF 49 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 19/46 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Y V L E+ +I +++Y + + + MLQ ++ Sbjct: 98 ENGYVKMPNVELITEMVDMITAQRAYEANATAVNTSKAMLQKAIDI 143 >gi|254485520|ref|ZP_05098725.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101] gi|214042389|gb|EEB83027.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101] Length = 130 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 9/118 (7%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + + + + NI NAD Y R+ + + Sbjct: 1 MSDFSNALDVSSSGLRAQANRLRHLSENISNADTPGYRRKLVSFQTAFSLGDAPAKVQTG 60 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 K D+ +++ L + D N + ++ +++ SY N Sbjct: 61 KVHLDQ--------TALEKVYDPAHPLADDTGQYDGSNVNLLIELADAKEAQRSYEAN 110 >gi|209964689|ref|YP_002297604.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209958155|gb|ACI98791.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 240 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/121 (7%), Positives = 31/121 (25%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + V A + +Q + NI N + + + + E +R Sbjct: 1 MENVLYIALSRQEAMRRQMDVVANNIANMNTSGFKSQRPLFLEYLERPDRRQERMSFVQD 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + + + + + A + + + + + + Sbjct: 61 YGLMRNLQAGPVTVTDNPLDVALRGDGYFAVETLAGPRYTRAGGFQLNTDRELVDRNGLP 120 Query: 123 L 123 + Sbjct: 121 V 121 >gi|89056688|ref|YP_512139.1| flagellar basal body rod protein FlgC [Jannaschia sp. CCS1] gi|88866237|gb|ABD57114.1| flagellar basal-body rod protein FlgC [Jannaschia sp. CCS1] Length = 130 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63 + A + +Q+ + NI NAD Y R+ T + V Q Sbjct: 5 SNALSVAASGMRAQTQRLTHVSENIANADTPGYQRKITSFEVERGFSAVEGQVRTGPVRL 64 Query: 64 DK 65 D+ Sbjct: 65 DQ 66 >gi|20807891|ref|NP_623062.1| flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4] gi|20516456|gb|AAM24666.1| Flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4] Length = 146 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 6/49 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43 M+L + + + + + +NI NA+ Y R+ + Sbjct: 1 MNLFSSMDISATGLTAERVRMDVVSQNIANANTTRTVQGGPYRRKLVVF 49 Score = 40.4 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + Y + VN+ E+ +I ++Y + M Q Sbjct: 99 QQGYVSYPNVNIVAEMVDMISATRAYEANVTAFNAAKSMFQ 139 >gi|325288804|ref|YP_004264985.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964205|gb|ADY54984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 256 Score = 53.5 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 46/193 (23%), Gaps = 6/193 (3%) Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330 ++ + V P + F S+ + I+ Sbjct: 45 ELSKSRAMYGGVAPGIAADQTALPVYNGNRFDFSQGTLVQSDQPQNMAISGEGFFQVAAA 104 Query: 331 CQGISETICVNPQYRSNPSFLRDGGS----VSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 T N N + G ++ G I D Sbjct: 105 NGRTGYTRAGNFGPDGNGRIVNPQGLLLELGAEIPENASDLSIGSDGKITAVVDDELTEL 164 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 +A L + + +LE ++S F I + + Sbjct: 165 GQLTLARFENPHGLQQAGDDI--YLETDQSGPPLTGNPGTEGFGQIQGGMLERSNTDTAK 222 Query: 447 ELSFLIKVEQSYN 459 +S +I+ +++Y Sbjct: 223 AMSNMIEAQRAYQ 235 Score = 38.1 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 10/122 (8%), Positives = 24/122 (19%), Gaps = 15/122 (12%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV--TVVTQRSENKNMF 63 + + N+ NA+ + ++ V + ++ Sbjct: 12 QSRLDMVGNNLANANTTAFKQQLLSEEEGMDTQELSKSRAMYGGVAPGIAADQTALPVYN 71 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDSLESYSKNLSEDI 122 + Q Q+ E N + N + Sbjct: 72 GNRFDFSQGTLVQSDQPQNMAISGEGFFQVAAANGRTGYTRAGNFGPDGNGRIVNPQGLL 131 Query: 123 LG 124 L Sbjct: 132 LE 133 >gi|332799171|ref|YP_004460670.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1] gi|332696906|gb|AEE91363.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1] Length = 143 Score = 53.5 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 6/57 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51 M + + + + +I NI NA+ + + R + + Sbjct: 1 MGFFNSLDISASGLTAQRLRLDTISNNIANANTTRTEEGGPFQRERVVFQERNTTGS 57 >gi|291288218|ref|YP_003505034.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus DSM 12809] gi|290885378|gb|ADD69078.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus DSM 12809] Length = 134 Score = 53.5 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 MS V A + + ++I N+ NA+ YVR+D + E Sbjct: 1 MSFFDVLGVAGTGMSAQRIRISAISANLANANTTRTDDGGPYVRQDVIFKQVLEGELAGG 60 Query: 55 Q 55 Sbjct: 61 V 61 Score = 36.5 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 4/26 (15%), Positives = 14/26 (53%) Query: 446 EELSFLIKVEQSYNISNKLIMFTDKM 471 EE+ +++ +SY + ++ ++ Sbjct: 99 EEMVNMLEASKSYEANTTVVSTAKQL 124 >gi|313895871|ref|ZP_07829425.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 137 str. F0430] gi|312975296|gb|EFR40757.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 137 str. F0430] Length = 151 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M + + A + + I NI NA+ Y RR + Sbjct: 1 MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50 Score = 40.0 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 16/43 (37%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 E Y VN+ E+ +I + Y + I M+ L Sbjct: 103 EGYVERPNVNIVSEMVDMISASRGYEANATTINAAKSMVNAAL 145 >gi|225849134|ref|YP_002729298.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] gi|225644137|gb|ACN99187.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] Length = 237 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 39/164 (23%), Gaps = 2/164 (1%) Query: 20 QFASIVRNIENADNKNYVRR--DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77 Q +I NI NA+ + + ++ PENV D + + A+ + Sbjct: 21 QLDTITNNIANANTSGFKKILMREISQKIPENVGQTGDLLVFPRFRDTPVINNQGALIKT 80 Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137 E + + E + + + + T + Sbjct: 81 DNPLDVAIEGEGFFNVETNVGRFYTRNGHFSINNEGFLVDQNGGYILDTNRQRIKLDTNG 140 Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + ++ N + Sbjct: 141 RVDITTKGEIYQNGRLVATLRVVNLQNLQPVGNGYYNGQEQATE 184 >gi|167590742|ref|ZP_02383130.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 262 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 53/246 (21%), Gaps = 10/246 (4%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SENKNMF 63 AS I NI NA+ + + + N + S ++ Sbjct: 1 MAGASNNLDVIGNNIANANTVGFKQSRAHFSDMYANSVATSVNTQIGIGTGLASIDQQFG 60 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 ++ +A+ F + + + + + Sbjct: 61 QGTINTTGNALDVAINGNGFFQMSNNGVVTYSRDGTFHRDKNGFIVDSHGRNLMGYNATA 120 Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 G + A +Q T+ R + + T + Sbjct: 121 GGVINTAATVPMQAPTTNLAPTATTRITGQFNLNSQDKVPVTTPFSATDNTTYNYMTSIQ 180 Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 +D+ Q D+ K T + T+ I + Sbjct: 181 VYDSLGGAQQVDMYFVKNGAPAPAGTWQAYAGVKGQTPTSLGTISFNTSGQIASTTPAAP 240 Query: 244 TVTSES 249 S Sbjct: 241 VTGSTG 246 >gi|260574402|ref|ZP_05842406.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] gi|259023298|gb|EEW26590.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] Length = 236 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 4/117 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ + NI N + R + + + S + + + Sbjct: 12 QSGLM---REMQVVANNIANISTTGFRREGVVFAEYVKRMDGEPSLSMA-HATARNIDLG 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 ++I Q F + + S E N L Sbjct: 68 QASISQTGGAFDFAIQGDGFFLIETPQGQRLTRAGSFTPSAEGELVNPDGFRLLDQG 124 >gi|94266975|ref|ZP_01290624.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93452330|gb|EAT02961.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 118 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 2/52 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTV 52 +++ A + Q+ ++ N+ N + Y + + P V Sbjct: 1 MVSGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEA 52 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + V ++ V+L EE+ ++ + + + K++ D Sbjct: 48 GGVEARAEKIDTPGPQVSEQTADGPELVEKSNVDLAEEMPNMMLSRRYFQANLKVVQTED 107 Query: 470 KMLQTLLEGV 479 + L LL Sbjct: 108 ERLGNLLNIK 117 >gi|255024636|ref|ZP_05296622.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J1-208] Length = 219 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%) Query: 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 + N P+ + + + +KN + ++ + Sbjct: 2 QSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQATNTTALLSSMSI 60 Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193 N ++++ + + I +L + +L +N AI A + +D L+Q Sbjct: 61 FTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GNAGSNPPNDLLNQ 118 Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253 RD LL ++ GIS NN V + G L T T+ Sbjct: 119 RDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS----TRTATGFEFS 174 Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 +DG ++ +P+G I A +++ + + +Q +++ + L + + Sbjct: 175 VDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNGLAKALDD 218 >gi|188997558|ref|YP_001931809.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932625|gb|ACD67255.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 236 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 15/177 (8%), Positives = 43/177 (24%), Gaps = 11/177 (6%) Query: 20 QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76 Q + NI N++ + + R+ I V D + + + Sbjct: 21 QLDTTTNNIANSNTPGFKKLLVREMSQKIPENKGKVGDL-LVFPRFMDSSVLNFQGPLIK 79 Query: 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL-------GKTVID 129 +++ + + E Y +++ + + Sbjct: 80 TENNLDLAIVRDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAYVLDENFRRIQIQDS 139 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + ++ + + + N E + N IK + Sbjct: 140 KFQITPKGEIYQNGQITGKIRVVNLQNLQAVGNSYYQGQEQQITNFEIKQGYLEGAN 196 >gi|251799752|ref|YP_003014483.1| hypothetical protein Pjdr2_5791 [Paenibacillus sp. JDR-2] gi|247547378|gb|ACT04397.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 275 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 10/274 (3%) Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260 S +I S + + +D TV + P + Sbjct: 2 NSSMINASVSMNALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNTRKQPDAFNQPGRL 61 Query: 261 SNQGSAVPKGKIKAL--LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318 ++ G A+ ++ + + D + + G Sbjct: 62 TSLNFNQGWGSRLAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDRAYTRNGAL 121 Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378 + D L + N P + G + + +A I Sbjct: 122 QLTVAANGDTILATPEGYPVVANTPAGEGPLVVPSGYQLRVNADGTAEGVATDGSTIELG 181 Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 + + + N L E A N +D + + + Sbjct: 182 SIKLVQATRPAALTLVADN--LYEIAD------GINVADVLQNVTPNGENGIALRQGALE 233 Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 VNL +E++ LI V+++Y ++ + + +D M+ Sbjct: 234 QSNVNLGDEMTELINVQRAYQMAARALTSSDTMM 267 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 40/156 (25%), Gaps = 7/156 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A N Q+ + NI N + Y R++ N R + Sbjct: 1 MNSSMINASVSMNALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNT-----RKQPDAF 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 +S Q ++ + ++ D+L + N + D Sbjct: 56 --NQPGRLTSLNFNQGWGSRLAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDR 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 V N +T + A+ Sbjct: 114 AYTRNGALQLTVAANGDTILATPEGYPVVANTPAGE 149 >gi|255605341|ref|XP_002538377.1| Flagellar L-ring protein precursor, putative [Ricinus communis] gi|223512459|gb|EEF24006.1| Flagellar L-ring protein precursor, putative [Ricinus communis] Length = 334 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 3/105 (2%) Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 V+ + + + + VA L N + +E Sbjct: 3 GVTIPEGAISVTVGSDGTVSAQMPNQTDLTQIGQIQVASFPNPAGLQAVGDNYL--IETP 60 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 S + L I + VN+ EEL +I+ +++Y Sbjct: 61 ASGTVALGNAGIDGRGTIRQGMLEGSNVNVVEELVDMIETQRAYE 105 >gi|311033282|ref|ZP_07711372.1| hypothetical protein Bm3-1_22549 [Bacillus sp. m3-13] Length = 280 Score = 53.1 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 28/272 (10%), Positives = 73/272 (26%), Gaps = 21/272 (7%) Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262 ++I + + ++ L + + ++ T I + S Sbjct: 20 DLISHNVANVDTVGYKQRSASFQELLAQQSNNQPLAQYDNQTARQSELGIRVGSGSGLSK 79 Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 + +G +KA ++ D + + ++ Sbjct: 80 TQLHLTQGPMKATDRMLDFALTKENQFFTVQVTENGQTSTQFTRNGV------------- 126 Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382 + + T +P S+ + +V + L L+ Sbjct: 127 FYLSPVNNAEVMLVTSEGHPVLDSDEQPIILPENVKEVKLQESGILSAVMTDGQAIAREL 186 Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI--SESYSNTV 440 + P +L ++ E + I + Sbjct: 187 GVAEVIRPQMLEARPGSLYALPPENVANQES------VVGFLQGGARQDIRMQQGMLEQS 240 Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 V+L E++ + +++SY + K + F D+M+ Sbjct: 241 NVDLASEMTEMTLMQRSYQFNAKSVQFADQMM 272 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 7/105 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A N N +Q I N+ N D Y +R + N Sbjct: 1 MNRIMLNATNTMNQLQKQLDLISHNVANVDTVGYKQRSASFQELLA-------QQSNNQP 53 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 + + + + S L + T + Sbjct: 54 LAQYDNQTARQSELGIRVGSGSGLSKTQLHLTQGPMKATDRMLDF 98 >gi|154710440|gb|ABS84283.1| FlgG-2 [Treponema paraluiscuniculi] Length = 271 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 +++ S + + + + VN+ E+ +I+V ++Y + K I Sbjct: 199 TYMQTPVSGAPIAAEGPE--RPAAVQGFVEASNVNVVNEMVRMIEVNRAYEANQKTIQAE 256 Query: 469 DKMLQTLLE 477 D M+ L Sbjct: 257 DGMMGRLWN 265 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 29/145 (20%), Gaps = 34/145 (23%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46 A + + + +I +N+ N D +Y R R S Sbjct: 6 YTAASGMSAQQHRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSS 65 Query: 47 ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V L S F ++ + Sbjct: 66 DVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEE------- 118 Query: 101 THYISKLRDSLESYSKNLSEDILGK 125 +E Y + + Sbjct: 119 YTRNGNFLVGVEGYLMTKNGYPVLG 143 >gi|94266018|ref|ZP_01289739.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94270422|ref|ZP_01291737.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450809|gb|EAT01850.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453413|gb|EAT03835.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 118 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 + + + V ++ V+L EE+ ++ + + + K++ D Sbjct: 48 GGVEARAEKIDTPGPQVSEQTADGPELVEKSNVDLAEEMPNMMLSRRYFQANLKVVQTED 107 Query: 470 KMLQTLLEGV 479 + L LL Sbjct: 108 ERLGNLLNIK 117 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTV 52 ++ A + Q+ ++ N+ N + Y + + P V Sbjct: 1 MVGGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEA 52 >gi|83589649|ref|YP_429658.1| hypothetical protein Moth_0797 [Moorella thermoacetica ATCC 39073] gi|83572563|gb|ABC19115.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 253 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + V+L EL ++ V +SY + K+I D+ L Sbjct: 201 QVKQGWLEESNVDLARELVDMLAVLRSYEANQKVIQTEDQTL 242 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 15/219 (6%), Positives = 39/219 (17%), Gaps = 23/219 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L A + I N+ NA + P Sbjct: 1 MLRGLYLASTGMLVQEMRQDVISNNLANATTGGFKSAVATVRSFPEMLLQRLEKNQAIPI 60 Query: 48 ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 V V + + L A + + Sbjct: 61 GPFSPGVMVDNIYTNTEP---GPLTETGHATDLALVQPGV-GVSPAFFVVRTPGGEAYTR 116 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + + D + + D+ + +N Sbjct: 117 NGQFQVDPGGWLVTAEGYPVQGQNGDIYVGTTDFKVDAGGRILVNGQVVDQLRVVTFANP 176 Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202 + + A + + + ++ Sbjct: 177 ALLQRQGDTLFTAPGAQALPAANFQVKQGWLEESNVDLA 215 >gi|320529387|ref|ZP_08030475.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis F0399] gi|320138353|gb|EFW30247.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis F0399] Length = 151 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M + + A + + I NI NA+ Y RR + Sbjct: 1 MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50 Score = 37.7 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 16/43 (37%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 E Y VN+ E+ +I + Y + I M+ L Sbjct: 103 EGYVERPNVNIVSEMVDMISASRGYEANTTTINAAKSMVNAAL 145 >gi|114706758|ref|ZP_01439658.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] gi|114537706|gb|EAU40830.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] Length = 240 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/206 (9%), Positives = 51/206 (24%), Gaps = 2/206 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ NI NA + + + +K Sbjct: 1 METSLPVALSGQIAMEKRLETLAHNIANARTVGFRAEEVRFEELLSHTAPDPVAFVSKG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L S A+ Q E A N +++ S E + L+ Sbjct: 60 -ETYLSNKSGALTQTGNPLDLAVRGEAFFAIQGDNGIVYTRDGRMQVSPEGMVQTLTGRP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + I + + + + + + + + Sbjct: 119 LLDAGGQALQVDPAGGPLTIGGNGMIHQNGQEVAAVGLFRIPQGANVTRADTSGVVSDVP 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208 + D + + + + Sbjct: 179 ATPVVEFLTDNVVQGYVEEANVNPVQ 204 Score = 43.9 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 26/49 (53%) Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + +++ + Y VN +E++ LI +++++ + ++ D+ L + Sbjct: 186 LTDNVVQGYVEEANVNPVQEMTRLIALQRAFESAANVVQTNDRSLSEAI 234 >gi|121596384|ref|YP_988280.1| flagellar basal body rod protein [Acidovorax sp. JS42] gi|120608464|gb|ABM44204.1| flagellar basal body rod protein [Acidovorax sp. JS42] Length = 101 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + AQ+ A + S N+ N + + R+ +P V + + Sbjct: 1 MTTLAAIAQSGLQAAQLRLDSSAHNVANLNTPGFRRQTVDQQAAPAPGGVQARVAAPAAA 60 Query: 63 FDKVLHAHS 71 L A + Sbjct: 61 PGVALEAEA 69 >gi|313905151|ref|ZP_07838520.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470054|gb|EFR65387.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 247 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + G ++ +E + +I+ +++++ + +++ +D++ QT + G++ Sbjct: 199 TVVTGALEQSGTDIAKEFTNMIEAQRAFSYNLRMVQTSDEVAQT-INGLR 247 >gi|304438470|ref|ZP_07398410.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368553|gb|EFM22238.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 151 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M + + A + + I NI NA+ Y RR + Sbjct: 1 MGMFLGIDTAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQ 50 Score = 36.9 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + Y VN+ E+ +I + Y + I M+ L Sbjct: 103 DGYVERPNVNIVAEMVDMISASRGYEANTTTINAAKSMVNAAL 145 >gi|260431749|ref|ZP_05785720.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] gi|260415577|gb|EEX08836.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] Length = 236 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/119 (8%), Positives = 28/119 (23%), Gaps = 16/119 (13%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64 Q+ + + NI NA+ Y ++ + + P ++ R + N + Sbjct: 11 QSGLM---NEMRLVANNIANANTTGYRQQGLVFSEFVRDLPGAPSLSMSRGQVRNTSFEQ 67 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 +L + + + + + Sbjct: 68 GLLTQTGGQFDFAIEG-------DGFFLIETPSGNRLTRAGSFAPDANGDLVTPDGYRV 119 >gi|310816827|ref|YP_003964791.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare Y25] gi|308755562|gb|ADO43491.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare Y25] Length = 127 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 16/56 (28%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 + A + + + NI NAD Y R+ + N V Sbjct: 5 STTLSIAASGMQAQASRMRFTSENIANADTPGYHRKLVSFRAAHANDGTVEASRVR 60 >gi|222530299|ref|YP_002574181.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] gi|222457146|gb|ACM61408.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] Length = 255 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 5/143 (3%), Positives = 22/143 (15%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F ++ + + Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIE--VPENQGAQQIFYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + L+ + Sbjct: 119 NGAFTLNSRGELVTLNGFYVLGQ 141 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Y VN +E+ +I V ++Y + K + D+ LQ + Sbjct: 203 GKVLQGYLEGSNVNSVQEMVNMISVLRAYEANQKAFVIQDETLQKAVN 250 >gi|153953798|ref|YP_001394563.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854414|ref|YP_002471536.1| hypothetical protein CKR_1071 [Clostridium kluyveri NBRC 12016] gi|146346679|gb|EDK33215.1| FlgG2 [Clostridium kluyveri DSM 555] gi|219568138|dbj|BAH06122.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 53.1 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 52/203 (25%), Gaps = 14/203 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54 +L + + N ++ SI N+ NA+ Y R + V Sbjct: 1 MLRAIWNSASAMNAEQEKLNSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEG 60 Query: 55 QRSENKNMFDKVLH---AHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110 Q + N ++ + L + E N + + Sbjct: 61 QNTINGTGVRTTNWLRDTLQGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVN 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + ++ + D +I + + + ++ Sbjct: 121 SMGELVDPDGNRLEVNLTEEGVNLINSGVLLNN--DNFTVDKKGQIYVNVDDNSVLYGKI 178 Query: 171 TVVNDAIKFKTASKHDAHDFLDQ 193 V N + S D + Sbjct: 179 NVYNAVGQDSMLSIGDNLYLPAE 201 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 24/260 (9%), Positives = 77/260 (29%), Gaps = 20/260 (7%) Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282 + + + +++ + +G V+ + + ++ +RD++ Sbjct: 20 NSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEGQNTINGTGVRTTNWLRDTL 79 Query: 283 VPIFQNQLDEMARVLIGSFSEKDP--IAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 Q + + G + G F + + +L + + + Sbjct: 80 QGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVNSMGELVDPDGNRLEVNLTE 139 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 N L + + + + ++ + D + I N+ L Sbjct: 140 EGVNLINSGVLLNNDNFTVDKKGQIYVNVDDNSVLYGKIN-VYNAVGQDSMLSIGDNLYL 198 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 +++ + +I + Y V+L E++ +I ++++ + Sbjct: 199 P--------------AENVQVTENQDA---NILQGYLEQSNVDLGREITDMILAQRAFAL 241 Query: 461 SNKLIMFTDKMLQTLLEGVK 480 K + D+M + + Sbjct: 242 GAKGLTTADEMWGLINNMKR 261 >gi|226315010|ref|YP_002774906.1| flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] gi|226097960|dbj|BAH46402.1| putative flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] Length = 276 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 27/42 (64%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + V++ EE+S L+ ++++Y ++++ I +D+M+ Sbjct: 226 TLRQGALESSNVSMTEEMSQLVNIQRAYQLNSRAIGISDQMM 267 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 N + + Q + N+ N D Y RR + Sbjct: 3 SLNISTSAMRGIQQALDNTANNLSNIDTIGYKRRVASFSELLT 45 >gi|51246532|ref|YP_066416.1| flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] gi|50877569|emb|CAG37409.1| related to flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] Length = 248 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 7/116 (6%), Positives = 24/116 (20%), Gaps = 1/116 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE-NKN 61 +++ A + + Q ++I N+ N + + + N + Sbjct: 1 MVSGKYSALSGALSRQQAISTISNNLANVNTTGFKKNTLSFESILNNQQQNSAEGINYSR 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + N + ++ Sbjct: 61 VGKSSTDFKQGTFKPTENPMDLAIQGKAFFKVQGVNGALYTRRGDFGLRGDNVLTT 116 >gi|325288776|ref|YP_004264957.1| flagellar basal-body rod protein FlgC [Syntrophobotulus glycolicus DSM 8271] gi|324964177|gb|ADY54956.1| flagellar basal-body rod protein FlgC [Syntrophobotulus glycolicus DSM 8271] Length = 160 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 22/102 (21%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN--------KN----YVRRDTMTTISPE 48 MSL + + + + + I NI N + Y R+ + + Sbjct: 1 MSLFSGMDISASGLTAQRLRMDLISSNIANMNTNHTEATTAAGNPIPYRRQMAVFST--- 57 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90 R+ + A S +GQ + + Sbjct: 58 -------RNSPNDFLSAFRSAGESEVGQGVSVTQILEDESPF 92 >gi|225569956|ref|ZP_03778981.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] gi|225161426|gb|EEG74045.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] Length = 250 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 59/239 (24%), Gaps = 27/239 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-------------------TMT 43 + F + +++ I N+ N Y R + Sbjct: 1 MFQGFYNLTSGVLTQTRRMNVISNNMSNVSTPGYKRDQFVCKTFKEEMIYRSGNKDKSSP 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 +V + + S + F ++ N S + Sbjct: 61 AQLGTMNRIVAADRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLD 120 Query: 104 ISKLRDSLESYSK--NLSEDILGKTVIDNAEEVVQNFNTSAREVQK-----IRADADKEI 156 + +L+ + + I T A+ + ++ + D+E+ Sbjct: 121 NNGYL-ALQGVGRVLGQNGPIYLGTDKIRADRLGNLYSEDGNNFLGRLSVVDFQNYDEEL 179 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215 ++ + T VN + K + + ++ + + + + Sbjct: 180 TKTTGDVYTSAGQGTAVNADVVHKALESSNVEPVNEMTQMMAGERALQSSAQVLKMYDQ 238 Score = 36.9 bits (83), Expect = 6.8, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 54/185 (29%), Gaps = 5/185 (2%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 QL M R++ + D AG E+ ++ G N + + Sbjct: 61 AQLGTMNRIVAADRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLD 120 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + V + N G + + + + ++ V Y Sbjct: 121 NNGYLALQGVGRVLGQNGPIYLGTDKIRADRLGNLYSEDGNNFLGRLSV-VDFQNYDEEL 179 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 D + + V + + V E++ ++ E++ S +++ Sbjct: 180 TKTTG----DVYTSAGQGTAVNADVVHKALESSNVEPVNEMTQMMAGERALQSSAQVLKM 235 Query: 468 TDKML 472 D+++ Sbjct: 236 YDQII 240 >gi|222530141|ref|YP_002574023.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor bescii DSM 6725] gi|222456988|gb|ACM61250.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor bescii DSM 6725] Length = 145 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 6/49 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 + N + + + + I +NI NA+ Y R+ + Sbjct: 1 MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEE 49 >gi|325567512|ref|ZP_08144179.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus ATCC 12755] gi|325158945|gb|EGC71091.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus ATCC 12755] Length = 260 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47 M++ + +++ N+ + NI N + Y + T Sbjct: 1 MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60 Query: 48 ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 ++ + + + L + + F +++ Sbjct: 61 NAAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 S N + T + + ++ + + + Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTAQWPDVQQIAIDASGQLTTEENGQ 166 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 L +N + N T + + +G + A+ + I A + + + Sbjct: 6 LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65 Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + F + L + + + N Q Sbjct: 66 GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 ++ + + W + + + + T E Sbjct: 126 LVNSEGYPVAMTTNVPTAQWPDVQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 + L + + F + + V+L ++ L+ +++Y ++ K Sbjct: 184 ITSVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243 Query: 464 LIMFTDKM 471 + D+M Sbjct: 244 AMQTADEM 251 >gi|225569955|ref|ZP_03778980.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] gi|225161425|gb|EEG74044.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] Length = 236 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 9/117 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55 + F A + I N N + Y + ++ + E V Sbjct: 1 MNTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLT 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110 + + S +G + + D N S Sbjct: 61 SGTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLS 117 Score = 38.9 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/235 (7%), Positives = 52/235 (22%), Gaps = 3/235 (1%) Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 ++ + V + L + Sbjct: 2 NTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLTS 61 Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + D + + R + L + Sbjct: 62 GTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLSRRAD 121 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD--LHMKS 425 N +N I + + +A + Sbjct: 122 GFYLVTDSNKLVLDEGQNPIRVQGGTLQGRPGVYSFASTDGMQSAGDNEFVPVAKNGAPV 181 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + E Y V++ +E++ ++ ++Y+ K++ +D++ QT + ++ Sbjct: 182 LNREAKLLEGYLELSNVDMAQEMANTVESSRAYSYVLKMVQSSDEIEQT-INSLR 235 >gi|150390489|ref|YP_001320538.1| flagellar basal-body rod protein FlgC [Alkaliphilus metalliredigens QYMF] gi|149950351|gb|ABR48879.1| flagellar basal-body rod protein FlgC [Alkaliphilus metalliredigens QYMF] Length = 147 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 MS N + + + +I +NI NA+ Y R+ + Sbjct: 1 MSYFNAINTSASGLTAERFRMDTISKNIANANTTRTPNGSPYKRQVVLFQS 51 >gi|325291945|ref|YP_004277809.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] gi|325059798|gb|ADY63489.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] Length = 244 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 11/216 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + + A + ++ +I N+ NA+ + + N V Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANANTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + + A Q F + A D + + + Sbjct: 61 QGNDYLSTRQ-----GAFEQTGNSFDFAIKGDAWFAMDTPDGQILSRDGRFTMRPDGALI 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + S + + + IR + + L + L N Sbjct: 116 SSSGYPVLDAGGGPIQLNANGGPITVSLDGAIRQNDNIVATLGVFQADFSKGFLRHPNSG 175 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 +K ++ + S + GIS + + Sbjct: 176 VKPVAPPTPVVNNHEVGVVQGYLEQSNVNGISQMTQ 211 >gi|163789628|ref|ZP_02184066.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] gi|159875160|gb|EDP69226.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] Length = 251 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 15/203 (7%), Positives = 46/203 (22%), Gaps = 26/203 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46 MS+ + +++ N Q + +I N + Y ++ Sbjct: 1 MSIP--LSISKSGMNAIQNQMDVVSNDIANINTTGYKSKNISFNELLLNDMNGEAAYLSA 58 Query: 47 ---PENVTVVTQRSENK-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 +++ ++ + N L + + + F Sbjct: 59 DAQGSGISIGSKSAVTSTNFTQGALVSDPNDYHLAIAGEGF------FGVTGENGERYLT 112 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + N + D L + + + A + + + + Sbjct: 113 RDGAFHVNGDKSITNDNGDTLEIQATIPINQWPEGDVSIAENGEVTIQSENNSMLVGTIP 172 Query: 163 LRRFLSELTVVNDAIKFKTASKH 185 L + + Sbjct: 173 LFYPAQPNAMQPVGENKFSYDGA 195 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 15/169 (8%), Positives = 49/169 (28%), Gaps = 2/169 (1%) Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362 + +A + + + + + N + + Sbjct: 76 TNFTQGALVSDPNDYHLAIAGEGFFGVTGENGERYLTRDGAFHVNGDKSITNDNGDTLEI 135 Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422 + +P+ ++ + + + + L + ++ + Sbjct: 136 QATIPINQWPEGDVSIAENGEVTIQSENNSMLVGTIPL--FYPAQPNAMQPVGENKFSYD 193 Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 I + Y V+L ++ +I ++SY+++ K+ TD+M Sbjct: 194 GAFGTGEGSIQQHYLEASNVDLASSMTEMILAQRSYSMNLKVAQGTDEM 242 >gi|126730138|ref|ZP_01745950.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37] gi|126709518|gb|EBA08572.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37] Length = 129 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44 MS + + + + + + NI N D Y R+ Sbjct: 1 MSAFSDALSVTSGGLTSQAARLRVVSENIANVDTPGYRRKQLNFA 45 >gi|239828563|ref|YP_002951187.1| flagellar basal body rod protein [Geobacillus sp. WCH70] gi|239808856|gb|ACS25921.1| flagellar basal body rod protein [Geobacillus sp. WCH70] Length = 278 Score = 52.7 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 14/45 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47 +L F A + ++ NI NA+ Y P Sbjct: 1 MLRGFYTAASGMMAQQRRIEMWTNNIANANTPGYKSDQAALRAFP 45 Score = 40.8 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 15/200 (7%), Positives = 65/200 (32%), Gaps = 12/200 (6%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 ++P F+ + + ++E + +++ + + + + Sbjct: 82 ELIPNFRQGDIKETGQPTDIALINGTLPVDAETGKEGTLFFIVQNENGDIRYTRNGNFTL 141 Query: 341 NPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397 NPQ ++ ++ D + + ++ + N +A Sbjct: 142 NPQGFLTTNDGWYVLDENGRRIQLPSTNFAVNADGTIV-----ANNTRIARINIAFAANP 196 Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457 TL++ ++ + + + + + + + V+L ++ ++ ++ Sbjct: 197 NTLVKEGNGLF----RSENGVLPSALGNPNITYTLKQGFLERANVDLNRAMTEMLSAYRA 252 Query: 458 YNISNKLIMFTDKMLQTLLE 477 + + K++ D+ + + Sbjct: 253 FEANQKIVQAYDRSMDKAVN 272 >gi|297585402|ref|YP_003701182.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143859|gb|ADI00617.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 276 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 21/40 (52%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + V++ E++ +I+ +++Y + I TD+M Sbjct: 229 VLQRALEMSNVDMSREMTSMIEAQRAYQFNASAIGITDQM 268 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 ++ N A ++ ++ N+ N + + RRD Sbjct: 4 SMINSAVT-MGQLQKKLDTVGNNLANVNTIGFKRRDVSFNDL 44 >gi|170750088|ref|YP_001756348.1| hypothetical protein Mrad2831_3689 [Methylobacterium radiotolerans JCM 2831] gi|170656610|gb|ACB25665.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/259 (10%), Positives = 73/259 (28%), Gaps = 6/259 (2%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 + G + +I+ N+ TV +S ++ + + + G + + Sbjct: 9 NSISGASAQSLALNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGVLPSTRNSL 68 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 + + + + + G ++ + D + Sbjct: 69 NIQGTMQSTGVSTNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPDASGYLSNG 128 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 + PS + ++ L D +A Sbjct: 129 AGYYLFAGPSATTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQLAQFGMQDN 188 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + ++ +S + + ++ + ++ S +I+ +Q+Y Sbjct: 189 LASL--DGGTYVATGQSGTPSYGLNGA----TVTAGSVEQSNAGISDQFSKMIETQQAYT 242 Query: 460 ISNKLIMFTDKMLQTLLEG 478 + K++ TD+MLQ + Sbjct: 243 ANTKVMSTTDQMLQDAIAM 261 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 50/224 (22%), Gaps = 10/224 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55 M L + + + + S +I NI N + +T TQ Sbjct: 1 MGLFTALSNSISGASAQSLALNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGV 60 Query: 56 --RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---YNNSPTHYISKLRDS 110 + N + + + + +K+ D ++ Sbjct: 61 LPSTRNSLNIQGTMQSTGVSTNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 Y N + L V ++ + A + S L +L Sbjct: 121 ASGYLSNGAGYYLFAGPSATTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQL 180 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214 + + ++ ++N Sbjct: 181 AQFGMQDNLASLDGGTYVATGQSGTPSYGLNGATVTAGSVEQSN 224 >gi|149182501|ref|ZP_01860974.1| flagellar basal-body rod protein C [Bacillus sp. SG-1] gi|148849761|gb|EDL63938.1| flagellar basal-body rod protein C [Bacillus sp. SG-1] Length = 153 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 10/58 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPE 48 MS+ N + + + + I N+ NAD Y R+ + + Sbjct: 1 MSIFHSMNTSASALSAQRLRMDVISSNMANADTTRGKLVDGEWQPYRRKSVVFQPNGG 58 >gi|196018884|ref|XP_002118881.1| hypothetical protein TRIADDRAFT_62874 [Trichoplax adhaerens] gi|190577863|gb|EDV18633.1| hypothetical protein TRIADDRAFT_62874 [Trichoplax adhaerens] Length = 454 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 46/338 (13%), Positives = 98/338 (28%), Gaps = 18/338 (5%) Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205 ++RA D ++ + R + + A + F + +E I Sbjct: 107 GELRAFFDLRDKIIPDIINRLDVYTNTLVKQVNSAYADALPSSGFESVTGNMKFSNNESI 166 Query: 206 GIS-----TIVRNNNDMVVYTSDGTTLFE---------TVPRDINFEKMNSYTVTSESNP 251 + + N+ S GT L I +K+ S T Sbjct: 167 YVHGKFKIAFLNPNDGTQAKDSSGTPLSMIEIDLDSIRDSNYQITIDKLISEINTKTHGK 226 Query: 252 IFIDGVVVSSN-QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 + ++ V SN S ++K+ + + + L I + ++ P N Sbjct: 227 VIVELVDNDSNVITSGQGYLRLKSDNPNFNFAIVDDNSNLSTDYASFISTNKDQKPFGVN 286 Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 + N S + + + + + Sbjct: 287 KFFGFNHIFSYSTDKYYNPGSFDNSAISLEVSDKITQNRKIDTAEIHVEGSNYAIGRN-- 344 Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 ++++ + K F F I+ + L Y + + + ++ Sbjct: 345 NQNILSELFELKEKQFNFPSYKRISNTTSSLAGYGNGIVSTVNVKHYYAEKRFNDEKIKL 404 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 I+E S+ GVN +EL + + E+ Y S K+ Sbjct: 405 EAINEEISSKSGVNADQELLNITQYERLYLNSLKVFQT 442 >gi|240139802|ref|YP_002964279.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|240009776|gb|ACS41002.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] Length = 246 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 9/193 (4%), Positives = 28/193 (14%), Gaps = 6/193 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + +++ I N+ N + R + V + Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSSRFQEYLMPVASADSFQRSDRR 60 Query: 63 FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ + + A Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + A + + ++ + N Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180 Query: 177 IKFKTASKHDAHD 189 Sbjct: 181 SSEAPGRPAGPGA 193 >gi|302037627|ref|YP_003797949.1| flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] gi|300605691|emb|CBK42024.1| Flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] Length = 255 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 + + + VN E+ +++ +SY + KLI D+M +T Sbjct: 187 AEGLFVGGKPAVSTRPQVQSGHIEESNVNSLSEMVKMMQGMRSYESAQKLIQTMDRMTET 246 Query: 475 LLE 477 ++ Sbjct: 247 AIQ 249 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 6/170 (3%), Positives = 25/170 (14%), Gaps = 33/170 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-------TMTTISPENVTVVT- 54 + + +Q N+ N + + + + + V Sbjct: 1 MNRAIYPILSGAVAQEKQLTVFANNLANVNTAGFKQDQQGFRGLFARASSTGTGVVSGGL 60 Query: 55 ------------------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + + + + Sbjct: 61 SSAISTRPAGPSERVFAEVHGVRTAFEPGRIRITGNPLDVAI-------QSDGFFEVKTP 113 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146 + + + T + + +Q Sbjct: 114 DGVRYTRNGIFSLDSQRRLVTNLGHPVMGTKGEIKVPPGNIQINAEGAIQ 163 >gi|1294806|gb|AAB06803.1| hook protein [Treponema denticola] Length = 184 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 35/163 (21%), Gaps = 28/163 (17%) Query: 27 NIENADNKNYVRRDTMTTIS--------------PENVT------VVTQRSENKNMFDKV 66 N+ N + + R V + S + Sbjct: 1 NVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELGGVNPKEVGLGMMVASIDTIFTQGA 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 L F LK+ + E N + + + Sbjct: 61 LQTTGVNTDLAIQGNGFFILKD-------GEKTFYTRAGAFGIDKEGTLVNPANGMRVQG 113 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169 + E ++ + + + ++++ + + + Sbjct: 114 WMAE-EAEGFRIINTSGQTEDLNIPIGQKLDRKATTSVNYACN 155 >gi|154249603|ref|YP_001410428.1| hypothetical protein Fnod_0921 [Fervidobacterium nodosum Rt17-B1] gi|154153539|gb|ABS60771.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 250 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%) Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD-------LHMK 424 N+ + + + I+ +L+ N I + + Sbjct: 130 NTQGNYLLNQNGQEIVVPETFSIDEAGNILDGNGNVIDRIAVYALSNPRKIGDTLFAGQP 189 Query: 425 SQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + I Y VN+ E+ +I+ + Y ++K I+ D++L ++ V Sbjct: 190 QNLPEDSFRILPGYIEKSNVNVVREMVKMIEAHRHYEATSKAIVVHDELLNKVINNV 246 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/170 (8%), Positives = 32/170 (18%), Gaps = 15/170 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49 + A + ++ N+ N + Y Sbjct: 1 MYRGVYTAAMGMLVDITKIDTLSNNLANVETNGYKADTPTFKAYFNKEIDRIKPEPENRR 60 Query: 50 VTVVTQRSENKNMFDKVLHAHSSA--IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V V + + + + + S + Q + + A N + Sbjct: 61 VEVKKIGNLEQAVILDEVRTNFSQGILEQTNVPSHIAINGDGFFAVRKANEIFYTRNGEF 120 Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157 N + L A + + I Sbjct: 121 IRDSNGRLVNTQGNYLLNQNGQEIVVPETFSIDEAGNILDGNGNVIDRIA 170 >gi|163758009|ref|ZP_02165097.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284298|gb|EDQ34581.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 35/149 (23%), Gaps = 2/149 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ N+ NA+ + + + V N+ Sbjct: 1 MQGSLYVALSSQIALERRMNTLADNVANANTTGFRATEIKFNEVLADTGVANVSFVNQG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + L + + F E + + + + N+ Sbjct: 60 -EDYLSTENGGLRTTGSQLDFAIRGEAWFMVETPTGNMLTKDGRFTITQAGELVNIDGYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + + A + D Sbjct: 119 VLDPGGAPIQLNPAGDPPKAGRDGGLTQD 147 >gi|138896904|ref|YP_001127357.1| flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] gi|134268417|gb|ABO68612.1| Flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] Length = 273 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 67/255 (26%), Gaps = 4/255 (1%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 TL + +E +D + + + +++ Sbjct: 21 TLSHNIVNSNTTGFKRREASFAELLTQQVDRLPDDEAPRQTPAGVRYGNGAGLASTMLVT 80 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 Q L E R L +F+ + G N I + + + Sbjct: 81 AQGPLTETGRALDFAFTAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGDRLALVTS-D 139 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 P + L+ L + + V I L Sbjct: 140 GRPVLDETNAPIELPAHATGFQLSPTGTLTATDANGAVVARVNLGVTVIRRPQLLEALGD 199 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 N + + + + V+L EEL L+ ++Y ++ + I Sbjct: 200 NVFTLPTAPGATQELNGNLRSQI--AMKQGALEQSNVDLGEELIGLMATTRAYQLNARAI 257 Query: 466 MFTDKMLQTLLEGVK 480 +++ML L+ ++ Sbjct: 258 SISEQMLG-LINNLR 271 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +L + A N N Q+ ++ NI N++ + RR+ Sbjct: 1 MLRSMHTAANTMNALQQRLDTLSHNIVNSNTTGFKRREASFAELLT 46 >gi|126463750|ref|YP_001044864.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides ATCC 17029] gi|332559806|ref|ZP_08414128.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides WS8N] gi|126105414|gb|ABN78092.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332277518|gb|EGJ22833.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides WS8N] Length = 126 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54 M+ LL + + + + + + NI NAD Y R+ P++ V T Sbjct: 1 MTDLLQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQEDPDSGLVST 55 Score = 41.6 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 S G + +RS+ ++ + + Y + V+L E++ + ++SY + ++ Sbjct: 54 STGPVRLDRSELQKIYAPGHPLAG--EDGYYDGSNVDLVVEVADAREAQRSYEANLRMFD 111 Query: 467 FTDKMLQTLLEGVK 480 +M Q+LL+ ++ Sbjct: 112 QARQMTQSLLDLLR 125 >gi|77464908|ref|YP_354412.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides 2.4.1] gi|221640829|ref|YP_002527091.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides KD131] gi|77389326|gb|ABA80511.1| putative flagellar basal-body rod protein FlgC [Rhodobacter sphaeroides 2.4.1] gi|221161610|gb|ACM02590.1| flagellar basal-body rod protein FlgC [Rhodobacter sphaeroides KD131] Length = 128 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54 M+ LL + + + + + + NI NAD Y R+ P++ V T Sbjct: 3 MTDLLQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQEDPDSGLVST 57 Score = 41.6 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 S G + +RS+ ++ + + Y + V+L E++ + ++SY + ++ Sbjct: 56 STGPVRLDRSELQKIYAPGHPLAG--EDGYYDGSNVDLVVEIADAREAQRSYEANLRMFD 113 Query: 467 FTDKMLQTLLEGVK 480 +M Q+LL+ ++ Sbjct: 114 QARQMTQSLLDLLR 127 >gi|207111880|ref|ZP_03246042.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_CA4C1] Length = 36 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 EE++ LI +++Y ++K I D MLQT+ + Sbjct: 1 EEMTDLITAQRAYEANSKSIQTADAMLQTVNSLKR 35 >gi|126734103|ref|ZP_01749850.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2] gi|126716969|gb|EBA13833.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2] Length = 130 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 13/51 (25%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54 + A + + + + NI N D Y R+ Sbjct: 5 SDAISVATSGMKAQASRLRHVSENIANTDTPGYRRKAITFEELVTQGRTTG 55 >gi|312621566|ref|YP_004023179.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor kronotskyensis 2002] gi|312202033|gb|ADQ45360.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor kronotskyensis 2002] Length = 145 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 + N + + + + I +NI NA+ Y R+ + S Sbjct: 1 MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEES 50 >gi|260222465|emb|CBA32056.1| Flagellar basal-body rod protein flgC [Curvibacter putative symbiont of Hydra magnipapillata] Length = 134 Score = 52.3 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++FN + + + SQ+ + N+ NAD Y R + P + Sbjct: 1 MSMFSIFNVSGSAVSAQSQRLNVVASNLANADAVAGPDGQGYKSRQVVFETVPMGSEASS 60 Score = 37.7 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y VN EE+ +I +SY + +++ +L L+ Sbjct: 88 DGYVTQSNVNPVEEMVNMISASRSYQNNVEVMNTAKSLLLKTLQM 132 >gi|237755436|ref|ZP_04584061.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] gi|237692400|gb|EEP61383.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] Length = 236 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/176 (8%), Positives = 42/176 (23%), Gaps = 9/176 (5%) Query: 20 QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQ----RSENKNMFDKV--LHAH 70 Q + NI N++ + + R+ I V R + + + L Sbjct: 21 QLDTTTNNIANSNTPGFKKLLLREMSQKIPENKGKVGDLLVFPRFMDSPVLNFQGPLIKT 80 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + + F ++ + N + + + Sbjct: 81 ENNLDLAIVGDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAYVLDENFRRIQIQDSK 140 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + + ++ + + + + E N IK + Sbjct: 141 FQITPKGEIYQNGQITGRIRVVNLQNLQAVGSSYYQGQEQQTTNFEIKQGYLEGAN 196 >gi|218133658|ref|ZP_03462462.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC 43243] gi|217991033|gb|EEC57039.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC 43243] Length = 149 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVT 51 M+L + FN A + + I NI N + YVR++ T ++V Sbjct: 1 MALFSQFNIASSGMTAQRLRTDVISENIANVNTTRTSDGTPYVRKEVYFTEKGKSVQ 57 >gi|303239788|ref|ZP_07326312.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592725|gb|EFL62449.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 259 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 43/179 (24%), Gaps = 9/179 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + N ++Q I N+ N Y + + P R N Sbjct: 1 MIRALYTSGWSMNANNKQMDVISNNLANVSTNGYKKDTVVYESFPN----ALVRRVND-- 54 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + S +G +L + N+ I + + Sbjct: 55 -TESTLNPSGKVGDVQLGNDVGQVFTYYTSGQLASTGNNLDLAIGSSDSAFFTIGVPSEN 113 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 L + + + + + D I LE N V N + Sbjct: 114 GELTEYYTRDGSFCLNSAKQLVTSEGYMVMGTDGPITLESENFSVLDDGSIVQNGQVVD 172 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 66/257 (25%), Gaps = 12/257 (4%) Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--AVPKGKIKALLQIRDS 281 T+ + + + +++ +N D VV S + L Sbjct: 6 YTSGWSMNANNKQMDVISNNLANVSTNGYKKDTVVYESFPNALVRRVNDTESTLNPSGKV 65 Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341 N + ++ + I T + Sbjct: 66 GDVQLGNDVGQVFTYYTSGQLASTGNNLDLAIGSSDSAFFTIGVPSENGELTEYYTRDGS 125 Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTL 400 S + G + + + +++ N + + TL Sbjct: 126 FCLNSAKQLVTSEGYMVMGTDGPITLESENFSVLDDGSIVQNGQVVDKLAIKDFTDTSTL 185 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 ++ N I + Q + + Y VN+ E+ +I V ++Y Sbjct: 186 RKFGENLI---------QTTEETQEQEFNGVVKQGYLEQSNVNVVNEMINMITVMRAYES 236 Query: 461 SNKLIMFTDKMLQTLLE 477 + K+I D L+ + Sbjct: 237 NQKVIQALDGTLEKAVN 253 >gi|300854230|ref|YP_003779214.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434345|gb|ADK14112.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 255 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/267 (8%), Positives = 66/267 (24%), Gaps = 22/267 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ F A + + I N+ NA+ + + D +S N + Sbjct: 1 MIRSFYSAVSGMITQEAKQDVITNNLANANTVGFKQDDLR------------VKSFNDML 48 Query: 63 FDKVLHAHSSAI-----GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + G L +++K + + + + + Sbjct: 49 LQNYDKTEGNRSVRNIIGSISLGSGIDSVKTGFTQGSIDSTGVSTDFAIDGRGFFTVRGQ 108 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 ++ + + N + V E+ + N + +N Sbjct: 109 DGKEYYTRDGHFHVNTNGVLVNDAGDSVLARNTRTGALGEMNVGNGNMTSDDHGNINIDG 168 Query: 178 KFKTASKHDAHDFLDQRDVLLQKI-----SEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 + + + + + + ++ V + + T Sbjct: 169 TPSYKLYTVDFNDYNTLTKVGDNLYTGTNAAETNVVVRQKSLEKSNVNIVNTMSQLMTTM 228 Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVV 259 R ++ ++ + +G V Sbjct: 229 RSFETDQKAVQSIDETLEKLINEGGKV 255 >gi|319765009|ref|YP_004128946.1| flagellar basal body rod protein [Alicycliphilus denitrificans BC] gi|330827204|ref|YP_004390507.1| flagellar basal body rod protein [Alicycliphilus denitrificans K601] gi|317119570|gb|ADV02059.1| flagellar basal body rod protein [Alicycliphilus denitrificans BC] gi|329312576|gb|AEB86991.1| flagellar basal body rod protein [Alicycliphilus denitrificans K601] Length = 107 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQR 56 ++ + + A++ A + S N+ N + R+ +P V T R Sbjct: 7 TMTPLASIARSGLQAAQLRLDSSAHNVANLGTPGFARQAVDQQAAPAQGGVQARTGR 63 >gi|146295640|ref|YP_001179411.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409216|gb|ABP66220.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 257 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 8/144 (5%), Positives = 21/144 (14%), Gaps = 21/144 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + NI N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDLTANNIANVSTTGFKRDIAQVESFRRMMTHKIYDDSSNSI 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + + F A+ E + Sbjct: 61 DNAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGSGFFAV-EKVDPQTGQAQVYYT 119 Query: 103 YISKLRDSLESYSKNLSEDILGKT 126 + L + Sbjct: 120 RNGAFTLNSNGELVTLEGFRVLGQ 143 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 D + + + Y VN +E+ +I V ++Y + K + D+ LQ + Sbjct: 194 ADAQSQQIAFSGRVLQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFIAQDETLQKAVN 252 >gi|284041496|ref|YP_003391836.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945717|gb|ADB48461.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 245 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 5/62 (8%), Positives = 27/62 (43%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + + + V++ + + ++ ++++ ++++ I D+ML+ + Sbjct: 184 PESGAATATNGATLRQGTLEGSNVDMSDAMVDMMNAQRAFQLASRAIHMQDQMLEVANQV 243 Query: 479 VK 480 + Sbjct: 244 KR 245 >gi|323706570|ref|ZP_08118123.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534077|gb|EGB23875.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 59 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Q ++ + + T V + E+ +I +++Y +++K I D ML + Sbjct: 5 QGRMGNVRQGFLETSNVQVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 59 >gi|125972984|ref|YP_001036894.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC 27405] gi|256004781|ref|ZP_05429756.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 2360] gi|281417195|ref|ZP_06248215.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum JW20] gi|125713209|gb|ABN51701.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC 27405] gi|255991231|gb|EEU01338.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 2360] gi|281408597|gb|EFB38855.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum JW20] gi|316940780|gb|ADU74814.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 1313] Length = 147 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 13/81 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 M + + + + +I +NI NA+ Y R+ + + Sbjct: 1 MGYFTSLDISASALTAQRLRMDTISQNIANANTTRTENGQPYRRKTVLFEEKSSTGS--- 57 Query: 55 QRSENKNMFDKVLHAHSSAIG 75 + + ++ G Sbjct: 58 ----FSEYLENSIRGKTAGAG 74 >gi|170747255|ref|YP_001753515.1| flagellar basal body rod protein FlgF [Methylobacterium radiotolerans JCM 2831] gi|170653777|gb|ACB22832.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] Length = 246 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 12/189 (6%), Positives = 33/189 (17%), Gaps = 6/189 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + ++ I N+ N + R+T V + Sbjct: 1 MQNALFVGVSSQMALQRELDVIANNMANVSTTGFKARNTRFEEYLMPVASADSFARPDRR 60 Query: 63 FDKVLHAHSS------AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 V+ ++ I Q + A + Sbjct: 61 LSYVIDQGTTLDLGQGPIEQTGNPLNVAVKGSAFIAVQSPQGERYTRNGAFELDAQGTLV 120 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + + + + + ++ N Sbjct: 121 TSDGYKVVGEGGPISINPQETGLAIGPDGTVSTNLGIRGRIKLVTFANPQRLTNEGANLY 180 Query: 177 IKFKTASKH 185 + A Sbjct: 181 ASPEPARAA 189 >gi|51894143|ref|YP_076834.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] gi|51857832|dbj|BAD41990.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 L + + V+L +E++ LI ++Y ++ + + D+ L Sbjct: 169 RLALADAAPETRLHSRRLEASNVDLAKEMTDLIVTLRAYQVNQRALRVQDETL 221 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 13/40 (32%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42 ++ +++ + + NI N + + R Sbjct: 1 MIRGIEASRSGMAVEQLRTDVLADNIANMNTSGFKRATAT 40 >gi|317121025|ref|YP_004101028.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] gi|315591005|gb|ADU50301.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] Length = 249 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 45/219 (20%), Gaps = 16/219 (7%) Query: 3 LLAVFNKAQNICNN---ASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENV 50 +L A + ++ A ++ N + Y +T P Sbjct: 1 MLRGLYTAASGMLARVLQQERLA---NDLANVNTPGYKASRNVTEAFPELFVARLERAGA 57 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 V + + L + + Q + Sbjct: 58 APVGPVGTGAVVAEPGLDLTAGPWLETGRPQDLALAGDGFFVVMGPAGPAYTRAGNFTVG 117 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 E Y + + T V T + Q ++ Sbjct: 118 PEGYLQTPDGWPVLGTDGQPL-LVGTADFTVTPDGQVQAGGVVVGTVARVTFANPAALRK 176 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 N + A D ++ VL Q + + Sbjct: 177 AGDNLLVDPGGAGPAVPVDTPVRQGVLEQSNVDPVRTVV 215 >gi|89895707|ref|YP_519194.1| hypothetical protein DSY2961 [Desulfitobacterium hafniense Y51] gi|89335155|dbj|BAE84750.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 251 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 44/208 (21%), Gaps = 32/208 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---------------------- 40 ++ A Q I N+ N Y + Sbjct: 1 MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTSTENEIPG 60 Query: 41 -TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 T+ V V N VL +E+ D N Sbjct: 61 NTLIGGIGTGVVVDQITRMN---VRGVLQTTDIPTDLA------LTAEEVFLVVDTPNGE 111 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 +L+ + E + + + + D+ ++ Sbjct: 112 RYTRNGQLQLNSEGMLQTADGYPVLGEEGPIGPLSKNFQVDAQGGITDQGVTMDRLRLVQ 171 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + ++ + + ++A Sbjct: 172 VPAVGLLREGQSLYASNQPVQDFAGNEA 199 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + VNL ++ +I V ++Y + K+I D L+ + Sbjct: 195 AGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDATLEKAVN 245 >gi|42522133|ref|NP_967513.1| flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] gi|39574664|emb|CAE78506.1| Flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] Length = 271 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 53/243 (21%), Gaps = 8/243 (3%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVR-RDTMTTISPENVTVVTQRSE--NKNMFD 64 A + S + +I N+ N + + R + N + + + Sbjct: 7 YTALSGAMAQSTKLDTIANNLANVNTPAFKRDQQLFQEYLTANEKMPETTQIPRDVAAIE 66 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + +F + + + L Sbjct: 67 SFYNMQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKGFFE-----IATPGGVKLT 121 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 ++ + Q V + I + D + Sbjct: 122 RSGNFTLDGSGQLVTKEGYPVLRQGEAGSDPAGRVIRFTGNGAVAIADNGDVYEGTENLG 181 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 + ++ D L + S + + + + S ET +I E + + Sbjct: 182 KLSLVNVNNPDSLQKTGSSLYTFKPNIAPDMQNIANPSLKQGFLETSNVNIVQEMTDMIS 241 Query: 245 VTS 247 Sbjct: 242 TNR 244 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 7/204 (3%) Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 +Q D + + ++ + +A + + G L + Sbjct: 71 MQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKG-FFEIATPGGVKLTRSGNFTLD 129 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + + + + GS + N +N + +N Sbjct: 130 GSGQLVTKEGYPVLRQGEAGSDPAGRVIRFTGNGAVAIADNGDVYEGTENLGKLSLVNVN 189 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 +L + + + D ++ + + + T VN+ +E++ +I Sbjct: 190 NPDSLQKTGSSLYTFKPNIAPDMQNIANP------SLKQGFLETSNVNIVQEMTDMISTN 243 Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479 + + + K I D+M ++ V Sbjct: 244 RVFESTQKAISAYDQMADKMINVV 267 >gi|119384846|ref|YP_915902.1| flagellar basal body rod protein FlgF [Paracoccus denitrificans PD1222] gi|119374613|gb|ABL70206.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222] Length = 238 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/121 (9%), Positives = 29/121 (23%), Gaps = 6/121 (4%) Query: 3 LLAVFNKAQ---NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 + A + ++ ++ NI NA+ + R + + + + Sbjct: 1 MDNAIYAALTRQSGLM---REMHTVANNIANANTTGFRREGVVFSEYMVPLDRRGETLAM 57 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 N +++ + Q E + + E N Sbjct: 58 ANGRGRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPD 117 Query: 120 E 120 Sbjct: 118 G 118 Score = 39.2 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 56/216 (25%), Gaps = 15/216 (6%) Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA--GNSENVP 315 + G ++ + + +++ V D N Sbjct: 2 DNAIYAALTRQSGLMREMHTVANNIANANTTGFRREGVVFSEYMVPLDRRGETLAMANGR 61 Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 G I G + Q P R + + + + + Sbjct: 62 GRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPDGHQL 121 Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS--------DSHDLHMKSQV 427 + GI + T+ N +G + S ++ L Sbjct: 122 LDDGAAPIVIPAGVGSIGIGADGTISADG-NPVGRVGVFASPDPARLRHEAGTLFDPGGA 180 Query: 428 V----FNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 V + + + V+ +E++ +I+V+++Y Sbjct: 181 VDPLEGAVLRQGFLEDSNVDPVQEIARMIEVQRAYQ 216 >gi|312621331|ref|YP_004022944.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201798|gb|ADQ45125.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 255 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 5/143 (3%), Positives = 22/143 (15%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDLTANNVANVSTTGFKRDVAQIESFRNMLVYRIYDKVTSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F ++ + + Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIE--VPENQGAQQIFYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + L+ + Sbjct: 119 NGAFTLNSRGELVTLNGFYVLGQ 141 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Y VN +E+ +I V ++Y + K + D+ LQ + Sbjct: 203 GKVLQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFVIQDETLQKAVN 250 >gi|253681880|ref|ZP_04862677.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561592|gb|EES91044.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 263 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/261 (9%), Positives = 57/261 (21%), Gaps = 26/261 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54 ++ A + N I N+ N+ Y + +D M + V Sbjct: 1 MIRGIYTAVSGLINQEAIQDVISNNLANSTTVGYKKDDLITRKFQDVMLHNYDKVVRGKN 60 Query: 55 QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYI 104 R++ + + + F N + Sbjct: 61 VRNDIGELSMGSKIDETCTNYSQGVLEDTGKSTDFAIQGNGFFVVSRNDRVNNQNLYTRD 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNA-----EEVVQNFNTSAREVQKIRADADKEIELE 159 Y N S D + + N +V N + + + Sbjct: 121 GHFHIDRNGYLVNGSGDKVMGKNLTNGAISPINILVNNSPARMACNDMGEIYLNGKPAFK 180 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 I + E I+ S + + D + + V + + Sbjct: 181 IQVVN---FENYKSLRKIQDNLYSGTNPKETNDVIVKQNYLEKSNVNVMAEVSDMMMTMR 237 Query: 220 YTSDGTTLFETVPRDINFEKM 240 + + + + Sbjct: 238 NFESNQKVVQALDETLGKTVN 258 Score = 40.0 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 23/46 (50%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++Y VN+ E+S ++ +++ + K++ D+ L + Sbjct: 213 VKQNYLEKSNVNVMAEVSDMMMTMRNFESNQKVVQALDETLGKTVN 258 >gi|292669734|ref|ZP_06603160.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC 43541] gi|292648531|gb|EFF66503.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC 43541] Length = 151 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M + + A + + I NI NA+ Y RR + Sbjct: 1 MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50 Score = 39.6 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 +E +RS ++ N + Y VN+ E+ +I + Y + I Sbjct: 82 IETDRSQGTLVYEPGHPDANA--DGYVERPNVNIVAEMVDMISASRGYEANATTINAAKS 139 Query: 471 M 471 M Sbjct: 140 M 140 >gi|223040701|ref|ZP_03610970.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] gi|222878065|gb|EEF13177.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] Length = 270 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 52/246 (21%), Gaps = 29/246 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +A + I N+ N + + R D + Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIKNH 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--H 95 + V + + L ++ + + L E+ D Sbjct: 61 TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 N S + E Y S+ E + + + Sbjct: 121 KNGSFNLDEDGFLVTKEGYKVLPSDYFSNNFQGIQIPEGERFSADKNGNLYSNEEPLARL 180 Query: 156 IELEISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + +R E + +K + + + + + I Sbjct: 181 YIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIETQ 240 Query: 214 NNDMVV 219 + Sbjct: 241 RFVEMY 246 >gi|149203126|ref|ZP_01880097.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] gi|149143672|gb|EDM31708.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] Length = 237 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/120 (9%), Positives = 27/120 (22%), Gaps = 10/120 (8%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ + NI NA Y + + + + + +M + Sbjct: 12 QSGLL---RELQVVANNIANAATTGYRQEGLIFSEFVKRTEGG----PSLSMARGNVRMT 64 Query: 71 SSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 S+ G L + + S + + Sbjct: 65 STLQGPLTPTGGMLDLAIEGDGFFLIETPAGERLTRAGSFTLSAQGDLVTPDGFRVLDAG 124 >gi|254470342|ref|ZP_05083746.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] gi|211960653|gb|EEA95849.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] Length = 246 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/188 (7%), Positives = 49/188 (26%), Gaps = 3/188 (1%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVL 67 + + + + N+ N + Y + + + ++ + Sbjct: 7 IGLSRQSALRRNLDVVANNLANINTTGYKAQRLIFEEYLMPTAQATEFQRPDRPLSFTQD 66 Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 ++ + Q + + L + D + + + S + + ++ Sbjct: 67 VGTATVLTQGSIQLTGNPLDVAIEGDGYLAVT-GAEGEQFYTRAGSLAIDPEGTLVTDGG 125 Query: 128 IDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + A+ N E+ + + EI L + + + S + Sbjct: 126 LPVLADGAPIQINPEDGEITITKEGVISTGQGEIGRLDVYTFDNRQELKHVGVNLFSGLN 185 Query: 187 AHDFLDQR 194 + Sbjct: 186 PIPANNPT 193 >gi|332531619|ref|ZP_08407516.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] gi|332038982|gb|EGI75411.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] Length = 246 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 32/152 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A N A + + + N+ N + + P T R Sbjct: 1 MDRIIYTAMTGANAAQHRQSVLSNNLANVSTNGFRAELSTYRAVPLRGEGATTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A ++ R L + + S + + + Sbjct: 61 TAGQRDAPGPSMRTGRDLDAMPQQSSWFAVQGLDGGEAYTRNGSFEVSPQGVLQTSNGLP 120 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 L + + A + Sbjct: 121 LLSDGGSPITVPENAVVSLGSDGTISAQSAGQ 152 >gi|89069819|ref|ZP_01157154.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] gi|89044620|gb|EAR50736.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] Length = 239 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 8/117 (6%), Positives = 17/117 (14%), Gaps = 3/117 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ + I NI NA Y + + + + Sbjct: 12 QSGLMA---EMRLIANNIANAATTGYRSEGVIFSEYVSALGPGHDSLSMARAAVRDTDIS 68 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + E + + Sbjct: 69 PGGMTATGGAFDLAIEGEGFFLVQTPGGERLTRAGHFMPNANGDLVTPDGYPVLDAG 125 >gi|330880524|gb|EGH14673.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 52 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%) Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 +I+ V+L EL LIK + +Y + K I ++QT ++ Sbjct: 1 TLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 51 >gi|331269339|ref|YP_004395831.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125889|gb|AEB75834.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 262 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 75/253 (29%), Gaps = 6/253 (2%) Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + G I+ NS TV + + + ++ + P K + Q+ Sbjct: 6 WNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQGKRQV 65 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 S V + + D L+ + + D + + + + Sbjct: 66 TGSGVKSTELERDNAQGNLLQTNNNTDLAIDGKGY--FKVVDGTGRTFYTRGGSFNIDPS 123 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 N + + + + Y S P+ + Sbjct: 124 GTVVDKNGNKLVILNENGTDVNKTGAGFTKDSFKVSEDGYIWSDKHRGFRIPIYDTIGDN 183 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 ++ N L + +D+ + + ++ V+L +E+S LI ++++ Sbjct: 184 SMKSIGENLYVPL-TQGNGRNDVIESKDF---SLLQGFTEQSNVDLGKEMSDLIITQRAF 239 Query: 459 NISNKLIMFTDKM 471 +++ + D+M Sbjct: 240 QLNSSALKTADEM 252 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 31/143 (21%), Gaps = 31/143 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L +++ + +I N+ N+ Y R D Sbjct: 1 MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100 + V +N L ++ + + + + + Sbjct: 61 GKRQVTGSGVKSTELERDN---AQGNLLQTNNNTDLAIDGKGYFKVVD------GTGRTF 111 Query: 101 THYISKLRDSLESYSKNLSEDIL 123 + + + L Sbjct: 112 YTRGGSFNIDPSGTVVDKNGNKL 134 >gi|192290239|ref|YP_001990844.1| hypothetical protein Rpal_1843 [Rhodopseudomonas palustris TIE-1] gi|192283988|gb|ACF00369.1| protein of unknown function DUF1078 domain protein [Rhodopseudomonas palustris TIE-1] Length = 273 Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 70/243 (28%), Gaps = 9/243 (3%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 K + + P + V+ + + +G I + Sbjct: 30 NAQTTAFKATNTAFSDLIYPPQVSDTVLWRSVLTNGQQGSISYDPVSTHMAIGGEGYFTV 89 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E + S + + G F ++ + I + L Sbjct: 90 EAPSGVSASGQPTFSTSETTYTRRGDFDLKNGYLVNGAGYYLMGSQIDPVTGAVGSTGPL 149 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + S + L +++L+ S + + ++ +A Sbjct: 150 QFDTSTALPDLGVLQSLSVSSSGKLQGTYSKGQTVDVASL-------SIASFAGQGFMKQ 202 Query: 412 EKNR--SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + V + S V++ ++++ +++ +Q+Y+ +++ ++ Sbjct: 203 GSGGTFSPTPQSGPALYVNAGTVVGSALEASNVDIADQMTTMVQAQQAYSACTRVVTASN 262 Query: 470 KML 472 +M+ Sbjct: 263 EMM 265 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 25/277 (9%), Positives = 61/277 (22%), Gaps = 11/277 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L A S F +I N+ NA + +T + V Sbjct: 1 MGSLGALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYPPQVSDTVLWRS 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS- 119 + + +I + E + + S +Y++ Sbjct: 61 VLTNGQ----QGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDF 116 Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 ++ + + ++ D + +S + Sbjct: 117 DLKNGYLVNGAGYYLMGSQIDPVTGAVGSTGPLQFDTSTALPDLGVLQSLSVSSSGKLQG 176 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235 + K S ++ +Y + GT + + Sbjct: 177 TYSKGQTVDVASLSIASFAGQGFMKQGSGGTFSPTPQSG--PALYVNAGTVVGSALEASN 234 Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 T+ VV+++ + + Sbjct: 235 VDIADQMTTMVQAQQAYSACTRVVTASNEMMLTMTSL 271 >gi|295400717|ref|ZP_06810694.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112591|ref|YP_003990907.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|294977298|gb|EFG52899.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217692|gb|ADP76296.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 274 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47 +L F A + ++ + NI NA+ Y P Sbjct: 1 MLRGFYTAASGMMAQQRRVEMLTNNIANANTPGYKADQAALRAFP 45 Score = 40.8 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 15/197 (7%), Positives = 54/197 (27%), Gaps = 4/197 (2%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + + I IA + +P + + Sbjct: 76 NTGVYMQELIPDFRQGDIKETGRPTDIALINGALPAAGGTLFFVVQNENGDIRYTRNGNF 135 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + + + + + + + N +A TL Sbjct: 136 TVNPQGFLTTNDGWYVLDENGQRIALPSEDFTVNADGTIVAGNARIARINIAFAANPNTL 195 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 ++ ++ + + + V + + V+L ++ ++ +++ Sbjct: 196 VKEGNGLF----RSEAGMLPSALNNPNVTYTFKQGFVERSNVDLNRAMTEMLSAYRAFEA 251 Query: 461 SNKLIMFTDKMLQTLLE 477 + K++ DK ++ + Sbjct: 252 NQKIVQAYDKSMEKAVN 268 >gi|260431752|ref|ZP_05785723.1| flagellar basal-body rod protein FlgC [Silicibacter lacuscaerulensis ITI-1157] gi|260415580|gb|EEX08839.1| flagellar basal-body rod protein FlgC [Silicibacter lacuscaerulensis ITI-1157] Length = 128 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 M + + + + + NI NAD Y R+ Sbjct: 1 MGDFSKSLEVTASALRAQAARLRHVSENISNADTPGYRRKTVPFEAV 47 >gi|224370168|ref|YP_002604332.1| FlgG1 [Desulfobacterium autotrophicum HRM2] gi|223692885|gb|ACN16168.1| FlgG1 [Desulfobacterium autotrophicum HRM2] Length = 117 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +L E + I ++++ + + I D+ML TLL+ V Sbjct: 75 ELSNTDLAGEFTDQIITQRAFEANTRTIQTEDQMLGTLLDIV 116 Score = 36.9 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 5/44 (11%), Positives = 15/44 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + N + + + A N+ N + ++ + + T Sbjct: 1 MGFAINTSASALKAFGTKMAVSANNVANVYSDDFKKSRALVTEG 44 >gi|319790435|ref|YP_004152068.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114937|gb|ADU97427.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 238 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 7/107 (6%), Positives = 21/107 (19%), Gaps = 4/107 (3%) Query: 20 QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76 Q + N+ N + + R + + P + + + Sbjct: 21 QLDTTTNNLANVNTPGFKRIIEEEMSQHVPPNGSDAYNM-LIFPRFKSTQVVLSEGPLRK 79 Query: 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 A N + + + + + Sbjct: 80 TDSPFDLALKGRGFFAVKTPNGELYTRNGHFTLNANGVLVDANGNPV 126 >gi|254504490|ref|ZP_05116641.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] gi|222440561|gb|EEE47240.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] Length = 246 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 23/142 (16%), Gaps = 7/142 (4%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68 + + Q + N+ N + + + + V T+ VL Sbjct: 7 IGLSRQSALRNQLDVVANNMANINTTGFKSQRLLFEEYLMPVAEATEFQTPDETLSYVLD 66 Query: 69 AHS------SAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSED 121 S A E Sbjct: 67 YQSITDFDTGAFKMTGNDLDLAIEGEGFFVVQMGDGTEAYTRDGAFVIDQNGQLVTSDGR 126 Query: 122 ILGKTVIDNAEEVVQNFNTSAR 143 + T A+ Sbjct: 127 PVMTTGGPITFSAEDGSVEIAK 148 >gi|114706769|ref|ZP_01439669.1| flagellar basal-body rod protein C [Fulvimarina pelagi HTCC2506] gi|114537717|gb|EAU40841.1| flagellar basal-body rod protein C [Fulvimarina pelagi HTCC2506] Length = 138 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55 L++ A + S + + N+ NA+ YVR+ + + VT Sbjct: 5 LVSSLKIAASGMEAQSTRLRVVSENVANAETTGDTPGADPYVRKTVTFGATLDEVTGANL 64 Query: 56 RSENKNMFDK 65 DK Sbjct: 65 VRVTDIGTDK 74 Score = 39.2 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 8/73 (10%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + +++D + + Y VN+ E+ + + +SY + ++I Sbjct: 67 VTDIGTDKADFESTYDPGNPAAD--ENGYVKRPNVNMLTEMMDMREANRSYEANIQVIKQ 124 Query: 468 TDKMLQTLLEGVK 480 +++ ++ ++ Sbjct: 125 AREIINMTIDLLR 137 >gi|310644367|ref|YP_003949126.1| flagellar basal body rod protein [Paenibacillus polymyxa SC2] gi|309249318|gb|ADO58885.1| Flagellar basal body rod protein [Paenibacillus polymyxa SC2] Length = 294 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 64/241 (26%), Gaps = 6/241 (2%) Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S T + NP G + + I+ L+ + G Sbjct: 50 SMTGGNPDNPDRTVGKLNTGVFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRP 109 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 D + + T + Q + L GS Sbjct: 110 MAFDQAGKFINANGEVTYRPEAFFTVRDNNGNVRYTRDGHFQVNGTGALLSSTGSAVLDT 169 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRS 416 N L G + + + + G +++++ + + + Sbjct: 170 NGNPIQLTGSVSALKVNERGQLVDSQSNQLLGTTLGISVIDRPYQLVREGNGNFRLNDTD 229 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + M + + + Y V+ + + ++ ++Y + K+I F DK L + Sbjct: 230 GATARMMTANDTV-SVRQGYLEVSNVDAAQSMVDMMAALRAYEANQKVIQFYDKSLDKAV 288 Query: 477 E 477 Sbjct: 289 N 289 Score = 43.9 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 7/157 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56 +L A ++ ++ +NI N + Y + +++ P Sbjct: 1 MLRGLYTAAAGMMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPD 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH-YISKLRDSLESYS 115 + V S + Q L+ + + N P + + + Sbjct: 61 RTVGKLNTGVFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRPMAFDQAGKFIN 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 N + + T Q A Sbjct: 121 ANGEVTYRPEAFFTVRDNNGNVRYTRDGHFQVNGTGA 157 >gi|320354341|ref|YP_004195680.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122843|gb|ADW18389.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 244 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 9/141 (6%), Positives = 29/141 (20%), Gaps = 2/141 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + Q +++ N+ N + + + Sbjct: 1 MGSGKYSALSGAVAREQAMSNVAANLANVSTTGFKKDRISFAAILRGAQQASDARGINFA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + S G Q + + + + +L K Sbjct: 61 RIRKIGVDFSQGGMQPTDRPLDVAIDGPGFFKVRKGGETFYTRSGRLMLDDNGMVKTEDG 120 Query: 121 DILGKTVIDNAEEVVQNFNTS 141 + + + Sbjct: 121 LNVLGAGNEPLQIDTALGKDI 141 >gi|218672515|ref|ZP_03522184.1| flagellar basal body rod protein FlgG [Rhizobium etli GR56] Length = 58 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 10/41 (24%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A + I NI N + + R T Sbjct: 3 ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDL 43 >gi|78042758|ref|YP_359838.1| flagellar basal-body rod protein FlgC [Carboxydothermus hydrogenoformans Z-2901] gi|77994873|gb|ABB13772.1| flagellar basal-body rod protein FlgC [Carboxydothermus hydrogenoformans Z-2901] Length = 138 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 14/69 (20%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTIS-------- 46 M+ + F + +IV NI NA+ Y R+D + Sbjct: 1 MAFFSSFQITASALTAHRLWLDTIVDNIANANTTRTPAGGTYNRKDVIFEEILEAKAGFK 60 Query: 47 PENVTVVTQ 55 V V Sbjct: 61 GGGVRVSQI 69 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ +E+ L+ +++Y + + M LE + Sbjct: 99 NVNINDEIVNLLAAQRAYEANVTVFNTAKAMYAKALELSR 138 >gi|56695101|ref|YP_165448.1| flagellar basal body rod protein FlgF [Ruegeria pomeroyi DSS-3] gi|56676838|gb|AAV93504.1| flagellar basal-body rod protein FlgF [Ruegeria pomeroyi DSS-3] Length = 216 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 23/102 (22%), Gaps = 7/102 (6%) Query: 25 VRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE 84 NI N+ Y ++ + + + + +M + S G Sbjct: 2 ANNIANSATSGYRQQGLVFSEFVRGGLGTS----SLSMARGQVRNTSQEQGVLTQTGGDF 57 Query: 85 AL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 L E + + + N L Sbjct: 58 DLAIDGEGFFMLETPGGERLTRAGSFTPNAQGDLVNPDGYRL 99 >gi|83647172|ref|YP_435607.1| flagellar basal body rod protein FlgF [Hahella chejuensis KCTC 2396] gi|83635215|gb|ABC31182.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 248 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/170 (6%), Positives = 35/170 (20%), Gaps = 17/170 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIV--RNIENADNKNYV------RRDTMTTISPENVTVVT 54 + A + + N+ NA+ + R + + Sbjct: 1 MDKALYIAMSG--AKQNMLSQRGHANNLANANTTGFKSDFMQARSMPVFGEHYPSRAYAM 58 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L + + A++ +L + Sbjct: 59 TERPATDFEMGSLMQTGRDLDVAVAGNGWIAVQ------APDGGEAYTREGELLLDVNGV 112 Query: 115 SKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + S + A + + + + + E+ + Sbjct: 113 LRTGSGLPVLGNGGPIAVPPAAKLNIGVDGTISIVPLGGNPDEIQEVDRI 162 >gi|144900468|emb|CAM77332.1| Flagellar basal-body rod protein FlgC [Magnetospirillum gryphiswaldense MSR-1] Length = 137 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 13/71 (18%) Query: 9 KAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMT------TISPENVTVVTQ 55 A + S++ I N+ NAD + Y R+ V V Sbjct: 10 IAISGMKAQSERLRVISENLANADSLARTPDGTPYKRKVVTFKSELDRANGYTGVKVDKV 69 Query: 56 RSENKNMFDKV 66 R + + Sbjct: 70 RPDASEFQRRY 80 Score = 41.2 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 21/40 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN E+ + + ++SY + +I + ++L +E ++ Sbjct: 97 NVNPLIEMMDMREAQRSYEANMNVINSSRQLLSRTVEMLR 136 >gi|58039418|ref|YP_191382.1| flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] gi|58001832|gb|AAW60726.1| Flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] Length = 246 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 66/228 (28%), Gaps = 8/228 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + + + + + N+ NA Y R + + + + Q Sbjct: 1 MENSTYIALSRMDAQQRAMSVVAANMSNASTVGYKRENVLFSDFLSHQHGSKQPEGADTE 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKN 117 A Q + + L E N + + + + Sbjct: 61 SYTQDRATYRDFQQGDMQSTGNPLDLALGGEGYFQVRTANGVRLTRAGRFEEQQDGAIVD 120 Query: 118 LSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 + + L I+ + + ++ + + + + + R +E + + Sbjct: 121 ENGNALLDRDGQPIELPQTDHRITISADGVISTETGEQGQIGIVTAQDNNRLQAEGSRLL 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + + TA + +Q ++E+ + I RN + M + Sbjct: 181 RSDQPTTAVERPNIVQGMVEGSNVQMMTEVTQMMEIQRNFDFMAQFVD 228 >gi|219670131|ref|YP_002460566.1| hypothetical protein Dhaf_4121 [Desulfitobacterium hafniense DCB-2] gi|219540391|gb|ACL22130.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 251 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 44/208 (21%), Gaps = 32/208 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---------------------- 40 ++ A Q I N+ N Y + Sbjct: 1 MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTNTENEIPG 60 Query: 41 -TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 T+ V V N VL +E+ D N Sbjct: 61 NTLIGGIGTGVVVDQITRMN---VQGVLQTTDIPTDLA------LTAEEVFLVVDTPNGE 111 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 +L+ + E + + + + D+ ++ Sbjct: 112 RYTRNGQLQLNSEGMLQTADGYPVLGEEGPIGPLSKNFQVDAQGGITDQGVTMDRLRLVQ 171 Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDA 187 I + ++ + + ++A Sbjct: 172 IPAVGLLREGQSLYASNQPVQDFAGNEA 199 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + VNL ++ +I V ++Y + K+I D L+ + Sbjct: 195 AGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDATLEKAVN 245 >gi|303248256|ref|ZP_07334519.1| protein of unknown function DUF1078 domain protein [Desulfovibrio fructosovorans JJ] gi|302490394|gb|EFL50305.1| protein of unknown function DUF1078 domain protein [Desulfovibrio fructosovorans JJ] Length = 128 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 27/91 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + AQ+ S A N+ N + Y +D + P+ Sbjct: 1 MTDAISAAQSALGAMSTSMAVTANNVANVNTDGYKSQDARLSTGPDGQGTQVSSIVEDTS 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93 + +A Q + + EM + D Sbjct: 61 AGALRAETVAAENQAGAYEPQMDMVEMSNVD 91 Score = 41.2 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 12/126 (9%), Positives = 34/126 (26%) Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 ++S N+ + + + + Sbjct: 1 MTDAISAAQSALGAMSTSMAVTANNVANVNTDGYKSQDARLSTGPDGQGTQVSSIVEDTS 60 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + ++Q V+L + +I+ +++ + +I D+M Sbjct: 61 AGALRAETVAAENQAGAYEPQMDMVEMSNVDLVRQNVNMIQDSRAFEANVAVIRTADEMA 120 Query: 473 QTLLEG 478 TLL+ Sbjct: 121 GTLLDL 126 >gi|313895777|ref|ZP_07829331.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 137 str. F0430] gi|320529388|ref|ZP_08030476.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis F0399] gi|312975202|gb|EFR40663.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 137 str. F0430] gi|320138354|gb|EFW30248.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis F0399] Length = 140 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 13/43 (30%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + + AS + + NI N + N+ R Sbjct: 8 SSTLDIGSRALAAASLRHEVLSNNIANVNTPNFRRSHVRFEDL 50 >gi|167945455|ref|ZP_02532529.1| flagellar hook protein FlgE [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 188 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 2/154 (1%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 S AG+ + + + G++ Q+ S+ + Sbjct: 37 SSNGALSTGAGDVTSGGLVPLDTFTPSGGAAPISGLNFNYVNTTQFGSSFAVNDLTQDGF 96 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++ + + + + +A N N L + W+E S Sbjct: 97 TSGRLSGVDVDSEGVVFARFTNGRSVGLGKVAMARFNNNQGLRQVGD--TRWVESFASGD 154 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452 L F + V+L E+L LI Sbjct: 155 VQLGEAGTSSFGLMQSGALENSNVDLAEQLVNLI 188 >gi|126738582|ref|ZP_01754287.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6] gi|126720381|gb|EBA17087.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6] Length = 130 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 1 MSLL-AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43 MS N + +++ + NI NAD Y R+ Sbjct: 1 MSEFANSLNVTASGLKAQAKRLRHVSENISNADTPGYRRKTVPF 44 >gi|90021857|ref|YP_527684.1| flagellar basal body rod protein FlgC [Saccharophagus degradans 2-40] gi|89951457|gb|ABD81472.1| flagellar basal-body rod protein FlgC [Saccharophagus degradans 2-40] Length = 144 Score = 51.6 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +F+ A + N S + + NI NA+ + Y R + Sbjct: 1 MSLSGIFDTAGSGMNAQSVRLNTTASNIANAETASSSADTVYRGRHPVFATVQAGYMQGQ 60 Query: 55 QRSENKN 61 + + Sbjct: 61 VGALDDE 67 Score = 39.2 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 24/38 (63%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +S+ ++ +++ +M+Q +L+ Sbjct: 105 NVNIVEEMANMISASRSFQMNVEVMNSAKQMVQRVLQL 142 >gi|226225740|ref|YP_002759846.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca T-27] gi|226088931|dbj|BAH37376.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca T-27] Length = 183 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN--YVRRDTMTTISPE 48 + A + + Q+ +I +NI NAD Y RR+ + + Sbjct: 4 MFKSMGIAASGISAQRQRMETIAQNIANADVTRGTDGTPYKRREVVLESATA 55 >gi|255322393|ref|ZP_05363539.1| flagellar basal-body rod protein [Campylobacter showae RM3277] gi|255300766|gb|EET80037.1| flagellar basal-body rod protein [Campylobacter showae RM3277] Length = 270 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 52/246 (21%), Gaps = 29/246 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +A + I N+ N + + R D + Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIENH 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--H 95 + V + + L ++ + + L E+ D Sbjct: 61 TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 N S + E Y S+ + + + + Sbjct: 121 KNGSFNLDEDGFLVTKEGYKVLPSDYFTNNFQGIQIPQGERFSADKNGNLYSNEEPLARL 180 Query: 156 IELEISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + +R E + +K + + + + + I Sbjct: 181 YIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIETQ 240 Query: 214 NNDMVV 219 + Sbjct: 241 RFVEMY 246 >gi|95929847|ref|ZP_01312588.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans DSM 684] gi|95134143|gb|EAT15801.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans DSM 684] Length = 143 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44 M + N + + + +I N+ NA+ + Y R+ + Sbjct: 1 MDIFTSLNISSSALKAQRIRLDTISSNMANAETTRTPEGGPYRRKMVVFE 50 >gi|218463663|ref|ZP_03503754.1| hypothetical protein RetlK5_31494 [Rhizobium etli Kim 5] Length = 106 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56 MS+ + N A + + + +I NI N+ +Y R +T T Sbjct: 1 MSISGITNTALSGMRAQTTRIGAIANNIANSSTPDYARLNTSLTAVTSGGVKAVVS 56 >gi|325288806|ref|YP_004264987.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964207|gb|ADY54986.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/186 (8%), Positives = 37/186 (19%), Gaps = 38/186 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----------------------- 39 ++ A +QQ +I +NIEN Y R+ Sbjct: 1 MIRGLYTAAAGMLANNQQSDTIDQNIENLKTPGY-RQASEKLQAFPAMLVERMEPSSTEP 59 Query: 40 ----DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95 T V + + ++ +L + + + A Sbjct: 60 VVMERTPIGSLGTGVQIESVMYQDGP---GMLRETGNQTDVAITARGY-------FAVST 109 Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155 + + S + + + + + Sbjct: 110 PDGERYTRSGHFLLDSAGGLRTPSGCPVLGQNGPVGPIPENFEIREDGTMINKEDNMEVD 169 Query: 156 IELEIS 161 + Sbjct: 170 RLRLVD 175 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 412 EKNRSDSHDLHMKSQVVFN------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 R L S+ V + + + Y VNL ++ +++V +SY+ + K++ Sbjct: 180 ALQREGDTLLFSSSEGVVDIPAGEVRLKQGYVEESNVNLNAQIVKMLEVVRSYSANQKVV 239 Query: 466 MFTDKMLQTLLE 477 D +LQ + Sbjct: 240 QTNDSLLQKAVN 251 >gi|254499121|ref|ZP_05111811.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] gi|254351660|gb|EET10505.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] Length = 237 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 2/125 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + Q + + SI +NI N + + R+ + + ++ + ++ Sbjct: 1 MFDAITATQLAMDYDQLKLQSISQNISNMNTPGFKRQ--LIENAGFDMHLQANVNQVAQQ 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ I Q + E + + + + + Sbjct: 59 LEQSHLKAQGLINQTKNPTDLALCGEGYFQVQGEQGIFYTRRGDFQVNNQGELTTATGET 118 Query: 123 LGKTV 127 + Sbjct: 119 VLGKG 123 Score = 42.3 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 6/51 (11%), Positives = 21/51 (41%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + V +E+ ++K + + + +++ D +L T + Sbjct: 180 GANTQVHQGFIEQSNVKSIDEMMDMVKTSRHFEANQRIMRTADNLLATAIN 230 >gi|238927420|ref|ZP_04659180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884702|gb|EEQ48340.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 151 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 6/59 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVV 53 M + + A + + I NI NA+ Y RR + + + Sbjct: 1 MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQPREKGTGIG 59 >gi|209963564|ref|YP_002296479.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209957030|gb|ACI97666.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 248 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 8/118 (6%), Positives = 30/118 (25%), Gaps = 6/118 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQ--R 56 + A + + N+ N + + + + + V R Sbjct: 1 MENSLYVALSQQMAVRRMLDVTANNVANMNTAAFRAERPVFDAFVEKAGKGQKVAFVIDR 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + D + + + + ++ ++ + +L+ Y Sbjct: 61 ATYTDTRDGTVASTGNPLDVAVRGDAWLSVATPDGIRYTRDGRLNRDPDGRLVTLDGY 118 >gi|157738153|ref|YP_001490837.1| flagellar basal body rod protein FlgC [Arcobacter butzleri RM4018] gi|157700007|gb|ABV68167.1| flagellar basal body rod protein FlgC [Arcobacter butzleri RM4018] Length = 154 Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 M +N A + + + + NI NA + Y +++ + Sbjct: 1 MGFFDGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDV 52 >gi|15887904|ref|NP_353585.1| flagellar basal body rod protein FlgF [Agrobacterium tumefaciens str. C58] gi|2459708|gb|AAB71784.1| FlgF [Agrobacterium tumefaciens] gi|15155496|gb|AAK86370.1| flagellar basal body rod protein [Agrobacterium tumefaciens str. C58] Length = 244 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 11/216 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + + A + ++ +I N+ N + + + N V Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANVNTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + + A Q F + A D + + + Sbjct: 61 QGNDYLSTRQ-----GAFEQTGNSFDFAIKGDAWFALDTPDGQILTRDGRFTMRPDGALI 115 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 + S + + IR + L I L N Sbjct: 116 SSSGYPVLDAGGGPIRLNPNGGPITVGLDGAIRQNDTIAASLGIFQADFSKGFLRHPNSG 175 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 +K ++ + S + GIS + + Sbjct: 176 VKPVAQPVPVVNNHEVGVVQGYLEQSNVNGISQMTQ 211 >gi|206896029|ref|YP_002246681.1| flagellar basal-body rod protein FlgC [Coprothermobacter proteolyticus DSM 5265] gi|206738646|gb|ACI17724.1| flagellar basal-body rod protein FlgC [Coprothermobacter proteolyticus DSM 5265] Length = 134 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 12/65 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS------PE 48 MS ++ A + + I NI N + + Y R+ + Sbjct: 1 MSGFSLLRIAGSALTAQRFRMDVISSNIANLETTRTPEGGPYHRKIVSFQSMMVGENQGQ 60 Query: 49 NVTVV 53 V V Sbjct: 61 GVKVA 65 >gi|89895737|ref|YP_519224.1| hypothetical protein DSY2991 [Desulfitobacterium hafniense Y51] gi|89335185|dbj|BAE84780.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 176 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/108 (9%), Positives = 28/108 (25%), Gaps = 15/108 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKN-----YVRRDTMTTISPE 48 M + + + + + I NI N + + Y R+ + Sbjct: 1 MGIFGSMDISASGLTAQRLRLDVISNNIANINTTRTGQLTEGGNQIPYQRQVVVFKARGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + + ++ + Q L + E+ + + Sbjct: 61 ESSFAE---TLNQALQGRSVSTTALLQGQTTLGTTGNGVEVQAIAEDT 105 >gi|190891944|ref|YP_001978486.1| flagellar basal body rod protein [Rhizobium etli CIAT 652] gi|190697223|gb|ACE91308.1| probable flagellar basal body rod protein [Rhizobium etli CIAT 652] Length = 100 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52 MS+ + N A + + + +I N+ N+ Y R +T T + V Sbjct: 1 MSISGITNIALSGMRAQATRIGAIANNVANSSTSGYARLNTGLTSTEPGVQA 52 Score = 40.0 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 12/111 (10%), Positives = 26/111 (23%), Gaps = 13/111 (11%) Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429 + N N + L + + Sbjct: 2 SISGITNIALSGMRAQATRIGAIANNVANSSTSGYARLNTGLTSTEPGVQAIVEPTT--- 58 Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ EL+ +I+ EQ+Y + + M + L+ + Sbjct: 59 ----------SDVDPATELTEMIEAEQAYKANAAVFETGADMWEMLMSIKR 99 >gi|302872573|ref|YP_003841209.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor obsidiansis OB47] gi|302575432|gb|ADL43223.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor obsidiansis OB47] Length = 145 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 + N + + + I +NI NA+ Y R+ + Sbjct: 1 MFDAINISSSALTAQRVRMDVIAQNIANANTTRTESGQPYRRKIVVFEE 49 >gi|315636296|ref|ZP_07891546.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22] gi|315479385|gb|EFU70068.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22] Length = 154 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 M +N A + + + + NI NA + Y +++ + Sbjct: 1 MGFFDGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDV 52 >gi|323490137|ref|ZP_08095357.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396185|gb|EGA89011.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 280 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + N A N + ++ I NI N + Y R++ + + Sbjct: 1 MNIQMNTASNTMSELQKKLDLIGNNIANVNTNGYKRQEASFSDA 44 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 I +++ V+L +E++ LI ++ + + I + D M+ Sbjct: 231 QIKQNFLEMSNVDLSDEMTELITTQRLFQSQGRAISYADDMM 272 >gi|325473784|gb|EGC76972.1| FlgC protein [Treponema denticola F0402] Length = 151 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51 M L N A + I NI NA + + + R + + Sbjct: 1 MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E Y VN+ E+ LI ++Y + ++ M Q L+ + Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151 >gi|320354701|ref|YP_004196040.1| hypothetical protein Despr_2613 [Desulfobulbus propionicus DSM 2032] gi|320123203|gb|ADW18749.1| protein of unknown function DUF1078 domain protein [Desulfobulbus propionicus DSM 2032] Length = 117 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 19/57 (33%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 +++ A + S + S NI N + + Y + + + T + Sbjct: 1 MISGIQSALSGAQAFSAKIESNAHNIANLNTEGYRKSRVVLSAGVAQSVQATVGRVD 57 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 V+L EE+ L++ Y + + + +D MLQTLL+ Sbjct: 75 ELSNVDLGEEIPDLMRNTHGYAANLRTVQVSDNMLQTLLDIK 116 >gi|42526722|ref|NP_971820.1| flagellar basal body rod protein FlgC [Treponema denticola ATCC 35405] gi|41817037|gb|AAS11731.1| flagellar basal-body rod protein FlgC [Treponema denticola ATCC 35405] Length = 151 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51 M L N A + I NI NA + + + R + + Sbjct: 1 MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E Y VN+ E+ LI ++Y + ++ M Q L+ + Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151 >gi|229166585|ref|ZP_04294337.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH621] gi|228616839|gb|EEK73912.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH621] Length = 137 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI N + Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNVNTTGAPGAEPYHRRSVVLESN 50 >gi|167750732|ref|ZP_02422859.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702] gi|167656411|gb|EDS00541.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702] gi|291532066|emb|CBK97651.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum 70/3] Length = 160 Score = 51.2 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 M+ L+ N A + + I +N+ NA Y R+ + + + Sbjct: 1 MAFLSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSEN 52 >gi|312880336|ref|ZP_07740136.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] gi|310783627|gb|EFQ24025.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] Length = 264 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 9/148 (6%), Positives = 29/148 (19%), Gaps = 23/148 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + + + N+ N D + R + Sbjct: 1 MFRGIYSGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEVLMDRVERYPEEGI 60 Query: 46 -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNS 99 +P + S + + + + +E D N+ Sbjct: 61 GPKRFNPRGRVPIGTLSLANVLHETAMRTAPGVMQVTNAPLDVALQEEGFFVVQDGAGNT 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTV 127 + + + ++ Sbjct: 121 FYTRSGHFQKNDQGQLVTHDGMLVQGDG 148 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 +++ D +V ++ + VN+ EE+S +I+ ++Y ++ K + D++ L Sbjct: 197 AETPDSGAPEEVEQPKVAVGFLERSNVNVVEEMSRMIEANRAYEVAAKTVTIQDELTSRL 256 >gi|297617136|ref|YP_003702295.1| flagellar basal-body rod protein FlgC [Syntrophothermus lipocalidus DSM 12680] gi|297144973|gb|ADI01730.1| flagellar basal-body rod protein FlgC [Syntrophothermus lipocalidus DSM 12680] Length = 145 Score = 50.8 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M L F+ + + + I N+ N + Y R+ + Sbjct: 1 MRFLNAFDISASGMTAQRLRMDVISNNLANVNTTRTPQGGPYRRQMVIFEA 51 >gi|120601522|ref|YP_965922.1| hypothetical protein Dvul_0472 [Desulfovibrio vulgaris DP4] gi|120561751|gb|ABM27495.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] Length = 125 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 2/52 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQR 56 + + NI N + + T P V V R Sbjct: 3 IDTGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYETGPGGEGVRVGEIR 54 Score = 40.8 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 18/42 (42%) Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ +++ ++++ + I D M +L+ + Sbjct: 83 EGSNTDTAREMVSMMETQRAHEANVASIRAHDDMTGVVLDIM 124 >gi|94500239|ref|ZP_01306772.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65] gi|94427538|gb|EAT12515.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65] Length = 148 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 16/34 (47%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MSL VFN A N S + + NI NA+ Sbjct: 1 MSLTNVFNVAGTGMNAQSVRLNTTASNIANAETV 34 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 22/36 (61%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ ++ +SY ++ +++ +MLQ L Sbjct: 109 NVNIVEEMTDMMSSSRSYQMNVEMMKTAKQMLQRTL 144 >gi|167037671|ref|YP_001665249.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040332|ref|YP_001663317.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514] gi|256750738|ref|ZP_05491623.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus CCSD1] gi|300914416|ref|ZP_07131732.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X561] gi|307264864|ref|ZP_07546426.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter wiegelii Rt8.B1] gi|307724348|ref|YP_003904099.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513] gi|320116086|ref|YP_004186245.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389485|ref|ZP_08211052.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus JW 200] gi|166854572|gb|ABY92981.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514] gi|166856505|gb|ABY94913.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750321|gb|EEU63340.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus CCSD1] gi|300889351|gb|EFK84497.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X561] gi|306920122|gb|EFN50334.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter wiegelii Rt8.B1] gi|307581409|gb|ADN54808.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513] gi|319929177|gb|ADV79862.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994490|gb|EGD52915.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus JW 200] Length = 147 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 M+L + + + + + I +NI N + Sbjct: 1 MNLFSSMDISASGLTAERLRMDIIAQNIANVNTT 34 Score = 40.0 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ +I ++Y + + M Q LE + Sbjct: 99 QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSLEIGR 146 >gi|145298492|ref|YP_001141333.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] gi|142851264|gb|ABO89585.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + A N+ NA+ + R + Sbjct: 1 MDHMLYIAMSGAKENMNSLAVRGNNLANANTVGFKSDFEQARSMQAFGEGLPSRVFAMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +N+ +L + Q + A+++ + L+ S + Sbjct: 61 RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114 Query: 117 NLSEDILGKTVIDN 130 + + Sbjct: 115 TSTGLNVVDDGGQP 128 Score = 43.9 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + VN+ +E++ LI++++ + K++ ++ Sbjct: 188 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236 >gi|312126441|ref|YP_003991315.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776460|gb|ADQ05946.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 255 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 7/143 (4%), Positives = 22/143 (15%), Gaps = 21/143 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + + + N+ N + R Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVGNVSTTGFKRDVAQVESFRNMLAYRIYDKPSSPD 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + + + F A++ M + Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAVE--MPNNQGAQQILYTR 118 Query: 104 ISKLRDSLESYSKNLSEDILGKT 126 + L + Sbjct: 119 NGAFTLNSRGELVTLDGFYVLGQ 141 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 I + Y VN +E+ +I V ++Y + K + D+ LQ + Sbjct: 203 GKIIQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFVIQDETLQKAVN 250 >gi|302338303|ref|YP_003803509.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] gi|301635488|gb|ADK80915.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] Length = 282 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 ++ + + + + + VN E+ +I+V ++Y + K + D + L Sbjct: 216 EEAGASNQVALGSETKVVQGFLEGSNVNSVTEMVRMIEVNRAYEANQKAMQTHDALTGRL 275 Query: 476 LE 477 + Sbjct: 276 IN 277 Score = 40.4 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61 ++ + + + +I N+ N D Y R +++ P+ + R N + Sbjct: 1 MVRGIYTGASGMVDQMHRMDAISNNLANVDLVGYKRDQSVSKAFPQ----MLIRRMNDD 55 >gi|261409669|ref|YP_003245910.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286132|gb|ACX68103.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 293 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 37/149 (24%), Gaps = 7/149 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT---MTTISPENVTVVTQ 55 +L A + Q+ ++ +NI N + Y + + + Sbjct: 1 MLRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNV 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + V S ++ + L+ + +P + D+ Y Sbjct: 61 GRKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYV 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSARE 144 E I + + + Sbjct: 121 DENGEVIYRPEGFFTVQNENGDVRYTRNG 149 >gi|225181613|ref|ZP_03735054.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus AHT 1] gi|225167721|gb|EEG76531.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus AHT 1] Length = 136 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 13/74 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI-------SP 47 M + N + + + I NI NA Y R+ + S Sbjct: 1 MQIFKAMNVSSSGLTAERFRLDLIANNIANAHTTRTEDGGPYQRKSAVFAEVMDGARKSG 60 Query: 48 ENVTVVTQRSENKN 61 + V V +N Sbjct: 61 QGVRVQGVSVDNTE 74 Score = 36.9 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 VN+ +E+ +I ++Y + + + M Sbjct: 96 NVNIVQEMVDMITATRAYEANVTALNASKNMF 127 >gi|167630286|ref|YP_001680785.1| flagellar basal-body rod protein flgb, putative [Heliobacterium modesticaldum Ice1] gi|167593026|gb|ABZ84774.1| flagellar basal-body rod protein flgb, putative [Heliobacterium modesticaldum Ice1] Length = 137 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50 + AS + I N+ N D Y R++ V Sbjct: 16 GLDAASTRHQVIADNLANVDTPGYKRKEVQFEDELAAV 53 >gi|254499120|ref|ZP_05111810.1| flagellar basal body rod protein [Legionella drancourtii LLAP12] gi|254351659|gb|EET10504.1| flagellar basal body rod protein [Legionella drancourtii LLAP12] Length = 258 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/193 (7%), Positives = 49/193 (25%), Gaps = 3/193 (1%) Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 L + ++ + + F D + + ++ + + Sbjct: 68 TALYKSSKDFTDGPLKASNNWNDVAINGSGFYQVINTDGSIAYTRNSALSVDADHYLATQ 127 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + + + + +A TL + Sbjct: 128 EGLRLADNIQIPEDFTQLTIHTNGNVEVTLVDEPEPQLLGTIQLAKFINPETLNPVGSGT 187 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + S + +++ V++ L L ++ Y ++ K + Sbjct: 188 YTL--TDESSEPLIDNPGSSGLGTLAQYQVEGSNVDMVSSLMQLTMAQRVYQLNAKAVQI 245 Query: 468 TDKMLQTLLEGVK 480 D+ L+ L ++ Sbjct: 246 ADE-LEKLTNEIR 257 Score = 39.6 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 22/254 (8%), Positives = 52/254 (20%), Gaps = 18/254 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61 + A + I ++ N + NY + N Sbjct: 1 MSNALAIAASGLKAEEYHIDRIANDLANLNTANYKATKLTFEDVLYQNIHGEESLFNNQP 60 Query: 62 ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYI 104 D L A ++ F + + + NS + Sbjct: 61 SAKLGLGTALYKSSKDFTDGPLKASNNWNDVAINGSGFYQVINTDGSIAYTRNSALSVDA 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + E + I T E + + + Sbjct: 121 DHYLATQEGLRLADNIQIPEDFTQLTIHTNGNVEVTLVDEPEPQLLGTIQLAKFINPETL 180 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + T + + L + S + +S++++ VY + Sbjct: 181 NPVGSGTYTLTDESSEPLIDNPGSSGLGTLAQYQVEGSNVDMVSSLMQLTMAQRVYQLNA 240 Query: 225 TTLFETVPRDINFE 238 + + Sbjct: 241 KAVQIADELEKLTN 254 >gi|207093272|ref|ZP_03241059.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 40 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 24/40 (60%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+L L+ LI V++ + ++K + +D++L TLL + Sbjct: 1 NVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 40 >gi|157363238|ref|YP_001470005.1| hypothetical protein Tlet_0374 [Thermotoga lettingae TMO] gi|157313842|gb|ABV32941.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 249 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/214 (8%), Positives = 47/214 (21%), Gaps = 10/214 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54 +L A + N+ N + Y R P+ + Sbjct: 1 MLRGIYTAAMGMLLDMSKLDVTANNLANVETVAYKRDKLAFRAYQDRAIYALPDRRQPIG 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + D L + + F E + + + + E Y Sbjct: 61 NLTYSAVLDDVFLDSSMGTFMKTDNPMDFAIDGEGFFSLLGEDGVYYSRAGNFKLNEEGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 N ++ + ++ + + I N + Sbjct: 121 LVNTDGLMVLDENNQPIRFESSYVVDADGYIRDPVGNVITRLG--IYNFDDPGELRKIGY 178 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + S + ++S + I Sbjct: 179 TLFQPTEESGQPVVADEFRILSGYVELSNVNAID 212 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I Y VN +E+ LI+ ++ + IS K + +D+ L L+ V Sbjct: 198 ILSGYVELSNVNAIDEMVNLIEAQRHFEISQKALTVSDETLAKLISQV 245 >gi|291280053|ref|YP_003496888.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1] gi|290754755|dbj|BAI81132.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1] Length = 205 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 I Y V+L +E+ +I + + + K D+ML ++ Sbjct: 156 EILPGYLEASNVDLAKEIVDMIVTKNYFEANLKTTKVIDEMLGNII 201 >gi|288962677|ref|YP_003452971.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914943|dbj|BAI76427.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 243 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 10/118 (8%), Positives = 26/118 (22%), Gaps = 1/118 (0%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDK 65 + +Q + N+ N + + T+ + T R Sbjct: 5 LYIGLSRQMALRRQLDVVANNVANMNTAGFRGERTLFEAAMEAGGRKPTDRIAFTIDRAT 64 Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 A+ + + A + +LR + + + Sbjct: 65 YTDLRPGALTETGNPYDVALDGDGFLAVQTPDGVRYTRDGRLRRDADGTLVGPNGYPV 122 >gi|299822258|ref|ZP_07054144.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601] gi|299815787|gb|EFI83025.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601] Length = 259 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 14/169 (8%), Positives = 31/169 (18%), Gaps = 17/169 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N + NI N++ + R+ + T+ + Sbjct: 3 GLYIGAAGMMNYMKHLDVHSNNIANSETAGFKFDQLTSQAMSRKQVQFNQADSAKTIGSV 62 Query: 56 ------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 N+ + + + Sbjct: 63 DYAVHPNQTFVNLKQGSMQVTGRDLDFFLHDAD-SEAGSSFFVAGKDGETFLTRGGSFYS 121 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + K L + Q T RAD ++ + Sbjct: 122 DQNGFLKTSDGANLLAENGTAIQVGAQTKITVDTAGNIRRADTNELLGK 170 Score = 42.7 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 17/47 (36%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 I + V++ E+ L+ ++ S+ +I D + Sbjct: 204 AGRALIQNGVLESSNVDMSTEMVELMDNQRMVQASSNIIKMFDTVYD 250 >gi|302878274|ref|YP_003846838.1| flagellar basal-body rod protein FlgC [Gallionella capsiferriformans ES-2] gi|302581063|gb|ADL55074.1| flagellar basal-body rod protein FlgC [Gallionella capsiferriformans ES-2] Length = 134 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 9/70 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPEN---VT 51 MSL +FN A + SQ+ + N+ NA Y + + + +P V Sbjct: 1 MSLFNIFNVAGSGMAAQSQRLNVVASNLANADSTTGADGKPYRAKQVVFSATPMGSTDVQ 60 Query: 52 VVTQRSENKN 61 V ++ Sbjct: 61 GVKVVRVAED 70 >gi|219670161|ref|YP_002460596.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense DCB-2] gi|219540421|gb|ACL22160.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense DCB-2] Length = 176 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 39/166 (23%), Gaps = 5/166 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + + + I NI N + R T + + Q K Sbjct: 1 MGIFGSMDISASGLTAQRLRLDVISNNIANINTT----RTGQLTEAGNQIPYQRQVVVFK 56 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + A + Q S AL + + N N Sbjct: 57 ARGTESSFAETLNQALQGRSVSTTALLQGQTTSGATGNGVEVQAIAEDTLPFRLEYNPDS 116 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRR 165 +T D + + A + E ++ L Sbjct: 117 PDAAQTTEDGIPAGYVRMPNVNIVTEMVDMISASRAYEANVTALNA 162 >gi|308071139|ref|YP_003872744.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860418|gb|ADM72206.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 294 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 63/241 (26%), Gaps = 6/241 (2%) Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S T + NP G + + I+ L+ + G Sbjct: 50 SMTGGNPDNPGRTVGKLNTGVFAEESLSPYIQGALKDSGQATDFAIQSNINVNDPATGQP 109 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 D + + T + Q + L GS Sbjct: 110 MAFDQAGKFINANGEVTYRPEAFFTVRDSNGNVRYTRDGHFQVNGAGALLSSTGSAVLDT 169 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRS 416 N L G + + + G +++++ I + + Sbjct: 170 NGNPIQLTGAVSELKVNERGELVDSQSNQTLGTTLGISVIDRPYQLIREGNGNFRLNDTD 229 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + M + + + Y V+ + + ++ ++Y + K+I F DK L + Sbjct: 230 GATARMMTANDAV-SVRQGYLEVSNVDASQSMVDMMAALRAYEANQKVIQFYDKSLDKAV 288 Query: 477 E 477 Sbjct: 289 N 289 Score = 44.6 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 14/174 (8%), Positives = 38/174 (21%), Gaps = 13/174 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56 +L A ++ ++ +NI N + Y + +++ P Sbjct: 1 MLRGLYTAAAGLMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPG 60 Query: 57 SENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRD 109 + V S A+ F + D K + Sbjct: 61 RTVGKLNTGVFAEESLSPYIQGALKDSGQATDFAIQSNINVNDPATGQPMAFDQAGKFIN 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + N + + ++ + + Sbjct: 121 ANGEVTYRPEAFFTVRDSNGNVRYTRDGHFQVNGAGALLSSTGSAVLDTNGNPI 174 >gi|160880851|ref|YP_001559819.1| flagellar basal-body rod protein FlgC [Clostridium phytofermentans ISDg] gi|160429517|gb|ABX43080.1| flagellar basal-body rod protein FlgC [Clostridium phytofermentans ISDg] Length = 150 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 6/60 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 MS+ N + + + + I +NI N + Y R+ + + Sbjct: 1 MSIFNGMNISASGMSAQRLRMDIISQNIANVETTRDENGNPYRRKTVVFSERESGSFGTV 60 >gi|85706168|ref|ZP_01037263.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] gi|85669332|gb|EAQ24198.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] Length = 237 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 10/120 (8%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ + NI NA Y + + + + + +M + Sbjct: 12 QSGLL---RELQVVANNIANAATTGYRQEGLIFSEFVKRSEGG----PSLSMAQGNVRMT 64 Query: 71 SSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 S+ G R L E + + S + + Sbjct: 65 STVQGPLRPTGGTLDLAIEGEGFFLIETPSGERLTRAGAFTLSAQGDLVTPDGFRVLDAG 124 >gi|329928728|ref|ZP_08282577.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328937509|gb|EGG33927.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 296 Score = 50.8 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 38/150 (25%), Gaps = 7/150 (4%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT---MTTISPENVTVVT 54 SLL A + Q+ ++ +NI N + Y + + + Sbjct: 3 SLLRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSN 62 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + V S ++ + L+ + +P + D+ Y Sbjct: 63 AGRKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRY 122 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 E I + + + Sbjct: 123 VDENGEVIYRPEGFFTVQNENGDVRYTRNG 152 >gi|332296626|ref|YP_004438549.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179729|gb|AEE15418.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 255 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 11/192 (5%), Positives = 35/192 (18%), Gaps = 7/192 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59 + A + ++ + NI N + + + N Sbjct: 1 MDNSIFTAVSGALSSQSALDVVANNISNVNTTGFKESNPTFADVLSQELSFATSRTNPLQ 60 Query: 60 ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + L + F N+ Sbjct: 61 IGAGSKLDSTSLSFTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFSLDSNGNL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + T + + + ++ + + + + + N Sbjct: 121 VTADGLYVQGTNGNINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVVDFINKNA 180 Query: 176 AIKFKTASKHDA 187 I + + Sbjct: 181 LINVGGNNFSPS 192 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 67/241 (27%), Gaps = 3/241 (1%) Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 S + I V + + S + + + Sbjct: 14 SSQSALDVVANNISNVNTTGFKESNPTFADVLSQELSFATSRTNPLQIGAGSKLDSTSLS 73 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + P+ ++ G + + + + N Sbjct: 74 FTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFSLDSNGNLVTADGLYVQGTNG 133 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR--NSIGWLEKNRSDSH 419 N+ + D + + + ++ + ++++ I N S S Sbjct: 134 NINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVVDFINKNALINVGGNNFSPSV 193 Query: 420 DLHMKSQVVFN-HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I ++ +L +++ LI E++Y ++ + I +D MLQT + Sbjct: 194 NSGNPVALSNGYSIIQNALEGSNTDLATQMANLIDYERTYQVNAQAITTSDSMLQTAIGL 253 Query: 479 V 479 + Sbjct: 254 I 254 >gi|326202441|ref|ZP_08192310.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987559|gb|EGD48386.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 11/169 (6%) Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369 N+ + T + SN + G + Sbjct: 101 NTGDKASPAFFTVGVTNPQDNTMQEFYTKNGSFTLNSNNQLVTGDGYAVLGKKGPITLKQ 160 Query: 370 GYPDLINHYCDSFNKNFIFDP-VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428 G + + N + +A + L ++ N + ++ Sbjct: 161 GDFTVDSKGNIMQNGAVVDTLRIAQFADSTQLRKFGNNLVQNNGGEVAE----------F 210 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Y VN+ +E+ +I V ++Y + K++ D L + Sbjct: 211 TGSVIQGYDELSNVNIIDEMVDMITVMRAYEANQKVLQAQDGTLDKAVN 259 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 18/252 (7%), Positives = 54/252 (21%), Gaps = 22/252 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ + ++ I N+ N + Y + + + Sbjct: 1 MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60 Query: 47 PENVTV-----VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + N Sbjct: 61 PSAVVGSMELSSDVGEVYTYYTPGQIVQTGDRYDLAIKDDNTGDKASPAFFTVGVTNPQD 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + S++ N + ++ ++ V ++ Sbjct: 121 NTMQEFYTKNGSFTLNSNNQLVTGDGYAVLGKKGPITLKQGDFTVDSKGNIMQNGAVVDT 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + +F + + + +F ++S + I +V M Y Sbjct: 181 LRIAQFADSTQLRKFGNNLVQNNGGEVAEFTGSVIQGYDELSNVNIIDEMVDMITVMRAY 240 Query: 221 TSDGTTLFETVP 232 ++ L Sbjct: 241 EANQKVLQAQDG 252 >gi|154253004|ref|YP_001413828.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] gi|154156954|gb|ABS64171.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] Length = 256 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 7/125 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQRS 57 + + S++ A+I NI N + Y + + E+ T R Sbjct: 14 MENALLIGLSRQMAMSREMATIANNIANMNTTAYKSEAMLFEEFLAKDASEDSPDSTIRF 73 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + L A+ E + + + Sbjct: 74 VQDVGQHRNLRD--GALQTTGNPFDVAITGEGFFRVETGQGVLYTRNGNFQLDADGQLVT 131 Query: 118 LSEDI 122 + D Sbjct: 132 SNGDP 136 Score = 38.1 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + VN E++ +I+V +SY + KLI D+M Sbjct: 205 LVQGALEGSNVNPILEMTNMIEVTRSYASAQKLIDQADQM 244 >gi|315301940|ref|ZP_07872942.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL F6-596] gi|313629693|gb|EFR97824.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL F6-596] Length = 74 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55 + A + N Q + NI NA+ Y ++ + T+ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV 53 >gi|23092316|gb|AAN08641.1| FlgF [Aeromonas hydrophila] Length = 248 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + A N+ NA+ + R + Sbjct: 1 MDHLLYIAMSGAKENMNSLAVRGNNLANANTIGFKSDFEQARSMQAFGEGLPSRVFAMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +N+ +L + Q + A+++ + L+ S + Sbjct: 61 RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114 Query: 117 NLSEDILGKTVIDN 130 + + Sbjct: 115 TSTGLNVVDDGGQP 128 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + VN+ +E++ LI++++ + K++ ++ Sbjct: 190 EAASANVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236 >gi|291558197|emb|CBL35314.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum V10Sc8a] Length = 160 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 M+ L+ N A + + I +N+ NA Y R+ + + + Sbjct: 1 MAFLSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSEN 52 >gi|144897831|emb|CAM74695.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Magnetospirillum gryphiswaldense MSR-1] Length = 273 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 13/127 (10%), Positives = 27/127 (21%), Gaps = 4/127 (3%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSENKNMF 63 A + N +Q I N+ NA+ Y M + + ++ Sbjct: 35 YIALSRQNALWRQLDVIAGNMANANTPGYKSEQMMFREYLMDTRSSDRATGKKLSYVQDI 94 Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 + A + + + R N + Sbjct: 95 GLLRDTREGAFTKTDNPLDLALHNDGFFQVETEAGMRYTRNGHFRLDEGGMLVNSQGAAV 154 Query: 124 GKTVIDN 130 T + Sbjct: 155 MDTGDNP 161 >gi|300024616|ref|YP_003757227.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] gi|299526437|gb|ADJ24906.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] Length = 240 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 46/205 (22%), Gaps = 2/205 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + ++ ++ N+ NA Y ++ Sbjct: 1 MQSNIYVGLSAQLALQRRLDTVANNVANAGTAGYRAEQMSFEEVLSKSGQTAVSFVSQG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L I Q + A +++ + NLS D Sbjct: 60 -RTHLSTEGGEITQTDNPLDIAVRGDAWLAIQTPTGPAYTRDGRMQMRADGVLTNLSGDP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + I D + + + + + ++ A Sbjct: 119 FLDAGGSPVQLDPDGGRITINKAGTIVQDGNNLGAFGLYRMPQGANLTRGHGASVITDQA 178 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207 + + + S + I Sbjct: 179 AVPEIDFLRTGVVQGYVEKSNVNPI 203 >gi|225377359|ref|ZP_03754580.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] gi|225210784|gb|EEG93138.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] Length = 196 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%) Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + VN+ +E+ +I + ++Y K+I D+ L + V Sbjct: 140 TASDAKVQQGCIEGSNVNVVDEMVKMITISRAYQAGQKVINTVDETLDKTVNQV 193 >gi|114765245|ref|ZP_01444377.1| hypothetical protein 1100011001307_R2601_00410 [Pelagibaca bermudensis HTCC2601] gi|114542380|gb|EAU45408.1| hypothetical protein R2601_00410 [Roseovarius sp. HTCC2601] Length = 249 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 20/230 (8%), Positives = 52/230 (22%), Gaps = 18/230 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVV 53 + A + +Q NI NA++ + + + E V Sbjct: 1 MDNSTYVAISKLTALERQLDVTANNIANANSSGFKAERVLFETYLQKDDASLAGEGTNYV 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R + V+ + + Q + A + +L + Sbjct: 61 LDRGSYVDDTPGVVVQTGNPLDLALTGQGWFAYE------MPDGRMAYGRDGQLVLDAQG 114 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL---RRFLSEL 170 S + + + + + + + ++ R Sbjct: 115 QVTTASGAQILDLGGAPLNIPPEFAASVTISDDGVISSPEGGVMGQVGIFELPDRQTLSR 174 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + A + + S + ++ + R N Y Sbjct: 175 GGAGMFVPNAEAQGLAPDETGSSVIQGAVESSNVQPVTEVTRLINIQQAY 224 >gi|207110167|ref|ZP_03244329.1| flagellar hook-associated protein FlgK [Helicobacter pylori HPKX_438_CA4C1] Length = 126 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 36/125 (28%) Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 D + SN S ++ + + G D+ N Sbjct: 2 DNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYD 61 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444 + F + + E+ + G + + S + + + I + + V++ Sbjct: 62 SVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSISQVSV 121 Query: 445 QEELS 449 EE+ Sbjct: 122 DEEMV 126 >gi|167628970|ref|YP_001679469.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] gi|167591710|gb|ABZ83458.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] Length = 267 Score = 50.4 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 2/41 (4%), Positives = 12/41 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43 ++ + + N+ N + ++ + + Sbjct: 1 MIRGLYTSASGMLVQQTNQDVTANNLANVNTVSFKKDRAVF 41 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 I VN+ +E+ +I ++Y + K I D L+ Sbjct: 216 EIRSGALELANVNVVQEMVQMISAARAYEANQKAIQSQDGTLE 258 >gi|253574272|ref|ZP_04851614.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846749|gb|EES74755.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 273 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 44/184 (23%), Gaps = 9/184 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + Q+ + NI N++ Y R++ + Sbjct: 1 MNNTVISAMVSMSGIQQRLDLLADNIANSNTVGYKRKEANFEDTLT--------RVQNQT 52 Query: 63 FDKVLHAHSSAIGQQ-RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 D L ++ G + + ++ +++ S + Sbjct: 53 SDLNLPGRATPSGFTLGFGSRMSQVTVNYAQGSIQETGNMTDLAIQGNAMFSVMLPGGDI 112 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + + ++ Q + E + LS N Sbjct: 113 AYTRGGDFHIQPDPDDAESAFLVNQLGYVVLNSEGDSITFPSDAKLSIDAEGNILATNGE 172 Query: 182 ASKH 185 + Sbjct: 173 GTTE 176 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 61/226 (26%), Gaps = 10/226 (4%) Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 ++++ + + G S + + + N D + + Sbjct: 50 NQTSDLNLPGRATPSGFTLGFGSRMSQVTVNYAQGSIQETGNMTDLAIQG--NAMFSVML 107 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 G+ G D + +++ V + +S N+ Sbjct: 108 PGGDIAYTRGGDFHIQPDPDDAESAFLVNQLGYVVLNSEGDSITFPSDAKLSIDAEGNIL 167 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 G P A + + L A D Q Sbjct: 168 ATNGEGTTEVGRIALLTAER---PDALVQKDGNLFVLAAGL-----DPAEAMVDNLSLPQ 219 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + V+L E ++ +++V+++Y ++ + + + M+ Sbjct: 220 EQRASLRQGALEASNVDLTEAMAEMLQVQRAYQLTARALTSGETMM 265 >gi|331269338|ref|YP_004395830.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125888|gb|AEB75833.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 263 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 33/149 (22%), Gaps = 18/149 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54 ++ A + N I N+ NA Y + +D M + V Sbjct: 1 MIRGIYTAVSGLINQEAIQDVISNNLANATTVGYKKDDLITRKFKDVMLHNYDKVVRGKN 60 Query: 55 QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYI 104 R++ + + + F N + Sbjct: 61 VRNDIGELSMGSKIDETCTNYSQGVLNDTGKSTDFAIQGNGFFVVSRNGRVNNQNLYTRD 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133 Y N S D + + N Sbjct: 121 GHFHIDRNGYLVNSSGDKVIGRNLANGAN 149 Score = 37.7 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 22/46 (47%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ VN+ E+S ++ +++ + K++ D+ L + Sbjct: 213 VKQNCLEKSNVNVMAEVSDMMMTMRNFESNQKIVQALDETLGKTVN 258 >gi|302392940|ref|YP_003828760.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] gi|302205017|gb|ADL13695.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] Length = 245 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 58/184 (31%) Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355 G ++ D + + +T RS L G Sbjct: 59 GTAGLGAKVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDG 118 Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415 V + V AG +++ + N+N + ++ + + + + Sbjct: 119 QVVTQNGNFVLGQAGPLEVVGEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLVKEGDDL 178 Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 + + I++ Y + VN+ E ++ +I+ + Y + +++ D+ L Sbjct: 179 YRATPDVGNQFMATGKINQGYLESSNVNVVESMTNMIEATRHYESNQRVVKAYDQSLDKT 238 Query: 476 LEGV 479 + V Sbjct: 239 VNSV 242 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 19/199 (9%), Positives = 42/199 (21%), Gaps = 14/199 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTISPE 48 +L A + N + ++ I N+ N+ Y RR + Sbjct: 1 MLRGLYTAASGMNASLKRTNIITNNLANSTTPGYKKDQTVNKSFSEMLLRRMPDKEVIGT 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + +H + + F A++ + T Sbjct: 61 AGLGAKVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDGQV 120 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168 + L + N + V ++R E + + Sbjct: 121 VTQNGNFVLGQAGPLEVVGEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLVKEGDDLYR 180 Query: 169 ELTVVNDAIKFKTASKHDA 187 V + Sbjct: 181 ATPDVGNQFMATGKINQGY 199 >gi|163939550|ref|YP_001644434.1| flagellar basal body rod protein FlgC [Bacillus weihenstephanensis KBAB4] gi|229132557|ref|ZP_04261406.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST196] gi|163861747|gb|ABY42806.1| flagellar basal-body rod protein FlgC [Bacillus weihenstephanensis KBAB4] gi|228650903|gb|EEL06889.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST196] Length = 137 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTGAPGAEPYHRRSVVLESN 50 >gi|2105146|gb|AAB57897.1| FlgC [Treponema denticola] Length = 151 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51 M L N A + I NI NA + + + R + + Sbjct: 1 MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57 Score = 42.7 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 E Y VN+ E+ LI ++Y + ++ M Q L+ + Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151 >gi|289805731|ref|ZP_06536360.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 71 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52 + ++ N A + N A ++ NI N + Y R+ T+ + V V Sbjct: 1 MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60 Query: 53 VTQRSENKNMF 63 + E ++ Sbjct: 61 SGVQREYDVVY 71 >gi|169831914|ref|YP_001717896.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis audaxviator MP104C] gi|169638758|gb|ACA60264.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis audaxviator MP104C] Length = 132 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 29/121 (23%), Gaps = 14/121 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRS 57 MSLLA + + + I NI N + + R + + V + Sbjct: 8 MSLLA------RALDGQAVRQRVIAHNIANLNTPGFKRSRVDFQAFMQAALDDSAVRMKR 61 Query: 58 ENKNMFDKVLHAHSSAI-----GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + G + E + N I + S Sbjct: 62 TDPRHLAGRAGDDNGPQVEIVRGTSQRADGNNVDLEREMVELVDNVLGYRAIGQFWSSKY 121 Query: 113 S 113 Sbjct: 122 G 122 >gi|90418393|ref|ZP_01226305.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans SI85-9A1] gi|90338065|gb|EAS51716.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans SI85-9A1] Length = 138 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 13/74 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTT------ISPEN 49 LL+ A + S + + NI NA Y R+ + Sbjct: 5 LLSSLKIAASGLQAQSTRMRIVSENIANAQTTGTTPGSDPYQRKMVSFQSELDRVSGAQM 64 Query: 50 VTVVTQRSENKNMF 63 V+V ++ Sbjct: 65 VSVDKVGRDDTPFI 78 >gi|326791545|ref|YP_004309366.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum DSM 5427] gi|326542309|gb|ADZ84168.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum DSM 5427] Length = 145 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46 M + A + + I +N+ N + + Y R+ + Sbjct: 1 MGFFDSMDIAASGLTAQRLRLDIISQNMANVNTTRTAEGGPYKRKTVIFEQM 52 >gi|157164118|ref|YP_001467097.1| flagellar basal-body rod protein [Campylobacter concisus 13826] gi|112799948|gb|EAT97292.1| flagellar basal-body rod protein [Campylobacter concisus 13826] Length = 269 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 58/231 (25%), Gaps = 27/231 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +A + I N+ N + Y R D + Sbjct: 1 MQNGYYQATAGMVTQFNRLNVISNNLANVNTIGYKRNDVVIGDFARIFKETQDELPLKNH 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HY 96 + V E + S+ + + L + + Sbjct: 61 TKDGAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDAFFLVDTPNGVKLSK 120 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 N S + + E Y S +V Q + + + ++ ++ Sbjct: 121 NGSFSLDGDGYIVTKEGYRVLPSGYEAQNPG-QRGIQVPQGEVLTGDKNGNLYSNNNQFS 179 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + I+ R V ++ + + D D ++S + + Sbjct: 180 KFYIAQPREIRDLKKVGDNLFETRNFDDITELDEADSVMQGYAQMSNVNPV 230 >gi|295688785|ref|YP_003592478.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] gi|295430688|gb|ADG09860.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] Length = 245 Score = 50.4 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 15/195 (7%), Positives = 42/195 (21%), Gaps = 17/195 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52 + + ++ + NI NA+ + T + V Sbjct: 1 MDNALYVGLSRQLTLRRELDVVANNIANANTTGFKVEDLMVRTEQSKPAKTLDGSAPVKF 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V ++ + + F ++ N + + E Sbjct: 61 VLDSGVARDFTQGAMTKTGGDFDLAIEGKGFFRVQ-------TANGDRYTRDGRFTTNPE 113 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172 S + S + + A + ++ + S Sbjct: 114 GQLVTQSGHPVLDEGGGPINIDPTLGQVSIGKDGIVTQGAVRVGKIAVVRPDNLASMAKD 173 Query: 173 VNDAIKFKTASKHDA 187 ++ + T + Sbjct: 174 GDNLYRNTTNATLQP 188 >gi|220903670|ref|YP_002478982.1| hypothetical protein Ddes_0391 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867969|gb|ACL48304.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 265 Score = 50.0 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 20/229 (8%), Positives = 52/229 (22%), Gaps = 21/229 (9%) Query: 12 NICNNASQ---QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------------ 56 + A + I N+ NA+ + Y R + R Sbjct: 7 SGLFAALTTEHRMNFIANNLANANTRGYKRDTVAFKDTMVTYAFDEIREPLMNLKSKPLF 66 Query: 57 -----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYISKLRDS 110 + + + ++ E S Sbjct: 67 PEPLNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRNGAFVLS 126 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 L N + ++ AD D ++ + ++ + Sbjct: 127 ENGTIMTPQGYPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSVDNPQNLE 186 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219 + N+ + + + + + + Q +E + + N + V Sbjct: 187 KMGNNLYRPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEV 235 Score = 44.3 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 14/189 (7%), Positives = 51/189 (26%), Gaps = 6/189 (3%) Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + +L + + + L + + + N Sbjct: 70 LNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRNGAFVLSENG 129 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + + + + N + ++ L + Sbjct: 130 TIMTPQG--YPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSVDNPQNLEK 187 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + R + + + I + ++ V + E+ +I+V++ + Sbjct: 188 MGNNLY----RPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEVQRQFEAYQ 243 Query: 463 KLIMFTDKM 471 K++ +D + Sbjct: 244 KVMQTSDTL 252 >gi|296531728|ref|ZP_06894556.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296267944|gb|EFH13743.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 252 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 1/119 (0%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69 + + QQ + N+ NA Y T+ + V + + Sbjct: 8 SLSGQLALRQQMDVVANNLANATTSGYRGDRTLFQSYVTRLAVPGREIAFVQDRATYIEN 67 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDILGKTV 127 IG E +P + + ++ + + Sbjct: 68 RQGPIGSTGNPLDLAIEGEAFFGVQRPGGAPGYTRDGRFKIRPDNVLADSQGRAVLGEG 126 >gi|95929873|ref|ZP_01312614.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] gi|95134169|gb|EAT15827.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] Length = 242 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 9/95 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53 + + + Q + N+ NA+ Y + + V Sbjct: 1 MSSGIYATLSGAVARMQTVDVVTNNLSNANTLGYKKDRVQFSAVLDSAKQNQQAGGVNYS 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88 + VL + F ++ Sbjct: 61 YVEVAKTDYSQGVLIDTRNEYDVAINGNGFFKVRN 95 >gi|229058378|ref|ZP_04196762.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH603] gi|228719887|gb|EEL71477.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH603] Length = 137 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTGAPGAEPYHRRSVVLESN 50 >gi|330809229|ref|YP_004353691.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377337|gb|AEA68687.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 236 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 15/165 (9%), Positives = 41/165 (24%), Gaps = 4/165 (2%) Query: 21 FASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78 ++ +N+ NA+ Y T + + V + + A+ Sbjct: 19 LKAVSQNVANANTVGYKAERTFNVMASNVAGPGVAGG--LDDIQAQTWISTDGGALQHTG 76 Query: 79 LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 + A + + Y + + + Sbjct: 77 RATDLALSGDAWFAIKTPGGVLLSRDGRFQVDKSGYLVSRAGYPVLADDGPLQVADGVLK 136 Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183 ++ EV + + + N ++ L+ + A T + Sbjct: 137 IDASGEVSVDDRPVGRLSIVRVDNPQQLLAVGDGLYAASTGITPA 181 >gi|283780136|ref|YP_003370891.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] gi|283438589|gb|ADB17031.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] Length = 250 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 37/182 (20%), Gaps = 24/182 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQRS 57 + + +Q+ I N+ N D + + + R Sbjct: 1 MYYGLYISAAGAYAQNQKVEMITNNLANVDTSGFKKELGIFEARQSEAIERGYEQPGTRG 60 Query: 58 ENK------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + + L A SS + + + Sbjct: 61 VSDIGGGVEFKETVTDFSLGTLRATSSRTDFA------LPATDQFFEIERDGEALLTRSG 114 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQN-FNTSAREVQKIRADADKEIELEISNLR 164 S++ + D + + + D ++SN R Sbjct: 115 NFHFSVDGVLRTQDGDAVLAAGGTPLTLDPSLPWRVLPGGLISQGGDTVPLSIKQVSNFR 174 Query: 165 RF 166 Sbjct: 175 SL 176 Score = 40.8 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 45/178 (25%), Gaps = 4/178 (2%) Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + A D ++ + + + + + + Sbjct: 72 ETVTDFSLGTLRATSSRTDFALPATDQFFEIERDGEALLTRSGNFHFSVDGVLRTQDGDA 131 Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419 L P L + D V V+ S+ + N ++ Sbjct: 132 VLAAGGTPLTLDPSLPWRVLPGGLISQGGDTVPLSIKQVSNF----RSLEKVGLNAFRAN 187 Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + VN +E+ +I ++Y + K+I D M +L+ Sbjct: 188 GELTDVPAELRDVRSGSLELSTVNPMQEMVEMIASSRAYENNIKMIQHHDGMTGSLVS 245 >gi|260220025|emb|CBA27150.1| hypothetical protein Csp_A00840 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 99 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56 + ++ + A + N A + N+ N + + R++T+ T + R Sbjct: 1 MNSISSIALSGLNAAQTSLNASAHNVANLATEGFKRQETVQTAQSGGGVTTSVR 54 >gi|73532548|dbj|BAE19832.1| flagellar hook protein [Edwardsiella tarda] Length = 76 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNMFDKVLHAH 70 N AS Q I NI N+ + V T S N++ D Sbjct: 1 MNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDFKDGTTTTT 60 Query: 71 SSAIGQQRLLQSFEAL 86 + + Q F + Sbjct: 61 NRGLDVAISGQGFFRM 76 >gi|51246506|ref|YP_066390.1| flagellar basal body rod protein (FlgC) [Desulfotalea psychrophila LSv54] gi|50877543|emb|CAG37383.1| probable flagellar basal body rod protein (FlgC) [Desulfotalea psychrophila LSv54] Length = 143 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP 47 M +L F + + S + +I NI NA+ + Y ++ P Sbjct: 1 MDILNSFKISSSALKAQSIRLDTISSNIANAETTSTPEGGPYKKKSVYFQAKP 53 >gi|153953797|ref|YP_001394562.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854413|ref|YP_002471535.1| hypothetical protein CKR_1070 [Clostridium kluyveri NBRC 12016] gi|146346678|gb|EDK33214.1| FlgG1 [Clostridium kluyveri DSM 555] gi|219568137|dbj|BAH06121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 255 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 22/250 (8%), Positives = 54/250 (21%), Gaps = 9/250 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ F A + + I N+ N + + + Sbjct: 1 MIRSFYTAVSGMIVQEAKQDVITNNLANVNTVGFK-----QDDLKSTPFNEVLIQNYDKV 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + IG L +++ + + + + + + + Sbjct: 56 VNGKNVR--NVIGSMTLGSKIDSVDTGFTQGTIESTDISTDFAIDGRGFFTVRREDGNEF 113 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + S V + + ++ N +I Sbjct: 114 YTRDGHFHVNTQGILVDDSGNTVIGRDNQTGALGAINVG--NGDITSDAYGNISIDGNER 171 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 K DF D D+ + G + N D+ Sbjct: 172 YKIYTVDFNDYNDLTKVGDNLYTGENAAEINTVVRQKSLEKSNINLVNTMSDLITTMRTF 231 Query: 243 YTVTSESNPI 252 T I Sbjct: 232 ETDQKVVQSI 241 >gi|89056685|ref|YP_512136.1| flagellar basal body rod protein FlgF [Jannaschia sp. CCS1] gi|88866234|gb|ABD57111.1| flagellar basal-body rod protein FlgF [Jannaschia sp. CCS1] Length = 240 Score = 50.0 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 15/179 (8%), Positives = 35/179 (19%), Gaps = 3/179 (1%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 + ++ A + NI N + + + + + A Sbjct: 12 LSGLM---REMAVVANNIANISTTGFRTEGLVFAEHIAATGNDSPSLSMGAAIGRSISAQ 68 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 A+ Q E + + L Sbjct: 69 QGALEQTASEFDLAIEGEGFFLIGTPDGEVLSRAGAFIRNDAGELVTPDGYYLLDAGGAP 128 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 Q + + I AD + + L A ++ + + Sbjct: 129 IFVPPQAGSVAVSSDGTISADGQPLTVVGLYLPNDPLELSRRSGTAFTVESGVQPADNA 187 >gi|227820852|ref|YP_002824822.1| flagellar basal body rod protein FlgF [Sinorhizobium fredii NGR234] gi|227339851|gb|ACP24069.1| Flagellar basal-body rod protein FlgF [Sinorhizobium fredii NGR234] Length = 241 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 32/130 (24%), Gaps = 2/130 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ NI NA+ + + + ++ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANANTVGFRSTEVKFDQVLGDTKPSKVSYVSEG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ L+ + A+ + F D + + L Sbjct: 60 -EEYLNTGNGALARTGSALDFAIKGNAWFNIDTPGGPALTRDGRFTLTETGELVTLKGYP 118 Query: 123 LGKTVIDNAE 132 + + Sbjct: 119 VLDAGGAPIQ 128 >gi|301168504|emb|CBW28094.1| putative flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 289 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 4/33 (12%), Positives = 13/33 (39%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMT 43 + ++ +I N+ NA+ + + + Sbjct: 20 LSGAIAQQRKVETIANNVANANTPGFKKDQIVF 52 Score = 39.2 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + VN +E+S LIK +++ ++I D + Sbjct: 237 TAVYQGFIEQSNVNAIQEMSELIKANRNFESIQRVIKTYDTI 278 >gi|85712255|ref|ZP_01043306.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693882|gb|EAQ31829.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 247 Score = 50.0 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 18/199 (9%), Positives = 43/199 (21%), Gaps = 17/199 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60 A + N + + N+ N + + R S + Sbjct: 5 LWIAMSGANENMKAVSVRANNLANTNTTGFKADLEQARSMQAFGEGLPTRVFSMTESPGQ 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 N + + + Q + A+++ N L + S Sbjct: 65 NFAEGPIRTTGRNLDVAINGQGWIAVQDA------NGNERYTRNGSLEIDAGGMLRTSSG 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 D + V + + + + + +VN + Sbjct: 119 DPVMGDA-----GPVLIPMPIDSLTIGRNGNISIRPQGAPEDANEIVDRIKLVNPPLNNV 173 Query: 181 TASKHDAHDFLDQRDVLLQ 199 + D + L Sbjct: 174 EKTTDGYFALKDGQQALAD 192 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 409 GWLEKNRSDSHDLHMKSQVVFNH---ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 +EK L Q + + + VN E++ +I +++ Y ++ K++ Sbjct: 171 NNVEKTTDGYFALKDGQQALADANVKLEVGALEGSNVNAIGEMTSMIALQRQYEMNVKMM 230 Query: 466 MFTDK 470 D+ Sbjct: 231 KTADE 235 >gi|154175436|ref|YP_001408075.1| flagella basal body rod protein [Campylobacter curvus 525.92] gi|112802880|gb|EAU00224.1| flagella basal body rod protein [Campylobacter curvus 525.92] Length = 273 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/175 (8%), Positives = 36/175 (20%), Gaps = 26/175 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +A + I N+ N + + R D + Sbjct: 1 MQNGYYQATAGMVTQFSRLNVISNNLANVNTIGFKRNDVVIGDFERIFKETQDELPLKNH 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HY 96 + V E + S+ + + L + + Sbjct: 61 TKDAAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDMFFLVDTPNGVRLTK 120 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 N S + E Y + + + + + + Sbjct: 121 NGSFNLDEDGFIVTKEGYRVLPNNYQTLAPEQRGIQVPLDRSLSVDKNGNIYTMN 175 >gi|312135856|ref|YP_004003194.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor owensensis OL] gi|311775907|gb|ADQ05394.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor owensensis OL] Length = 145 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 + N + + + I +NI NA+ Y R+ + Sbjct: 1 MFDAINISSSALTAQRVRMDVIAQNIANANTTRTENGQPYRRKIVVFEE 49 >gi|255264378|ref|ZP_05343720.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62] gi|255106713|gb|EET49387.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62] Length = 130 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 1/66 (1%) Query: 1 MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + + + + NI NAD Y R+ T E + Sbjct: 1 MSDFSNSLAISASGMAAQTDRLRFTSENIANADTPGYRRKTTSFEAIVEQGQSTGAVTTG 60 Query: 60 KNMFDK 65 + DK Sbjct: 61 PMVLDK 66 >gi|218135323|ref|ZP_03464127.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] gi|217990708|gb|EEC56719.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/235 (9%), Positives = 51/235 (21%), Gaps = 28/235 (11%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSE 58 A N + + N+ NA Y + + ++ +V T Sbjct: 4 GLYTAYTGLVNQQNRLDVVSNNLANAATTAYKKEGLTSQSFDEVMAYKVKDASVGTVNQY 63 Query: 59 -------------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 ++ F ++ + ++ Sbjct: 64 IGDLNLGVKIGESYRDYSQGSFRETGENFDLALSGDGFFSI--SFTNKAGETSTMYTRDG 121 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + Y D + E T A ++ R ++I L Sbjct: 122 NFSMTKDGYLVTKDGDFVL------GEGGPIQLPTDAAKIAIDRDGTITADGVQIDKLAI 175 Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 E + D D + Q E ++ + + + Sbjct: 176 TDFEDYNYLEQYGENLYRALDTATTKDAAGQVYQGYLEQSNVNVVSEMVEMITIS 230 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 4/177 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 IG E +A + + N S +DG V Sbjct: 73 IGESYRDYSQGSFRETGENFDLALSGDGFFSISFTNKAGETSTMYTRDGNFSMTKDGYLV 132 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +K + + + + +++ + + ++ +LE+ + Sbjct: 133 TKDGDFVLGEGGPIQLPTDAAKIAIDRDGTITADGVQIDKLAITDF--EDYNYLEQYGEN 190 Query: 418 SHDLHMKSQV--VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + + Y VN+ E+ +I + +++ + K + D L Sbjct: 191 LYRALDTATTKDAAGQVYQGYLEQSNVNVVSEMVEMITISRAFEANQKAMNAADDTL 247 >gi|120613370|ref|YP_973048.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1] gi|120591834|gb|ABM35274.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1] Length = 100 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENK 60 A Q + N+ N + + + R+ + P V R+ + Sbjct: 11 GLRAAQLQLDTSAHNVANMNTEGFRRQTVEQSAVPDQGGVEARVGRAAVE 60 >gi|168186143|ref|ZP_02620778.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295828|gb|EDS77961.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 257 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 4/178 (2%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 + + IA + + S Sbjct: 70 TTELERDNAQGNLLQTNKNTDIAIDGHGFFKVQDGKGRTFYTRGGSFNIDNSGTVVDKDG 129 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +K + N + SF N G NTN + Y ++ + Sbjct: 130 NKLVILNERGENINNPGAGFRTTSFKINEEGYVSGGPNTNARIPIYTSIGDNSMKSIGDN 189 Query: 418 SHDLHMKSQVVFN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + +V + + ++ V+L +E++ LI ++++ +++ + D+M Sbjct: 190 LYVPENANTIVVQNEDVSLLQGFTEQSNVDLGKEMADLIITQRAFQLNSSALKTADEM 247 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 31/141 (21%), Gaps = 29/141 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L +++ + ++ +I N+ NA Y + D Sbjct: 1 MLRSIWNSRSGMSAEMEKLNAISNNMANATTVGYKKVDVQFNDLMQENLDRYGYPVSKGN 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + V +N L + F +++ + Sbjct: 61 PQFTGTGVRTTELERDN---AQGNLLQTNKNTDIAIDGHGFFKVQD------GKGRTFYT 111 Query: 103 YISKLRDSLESYSKNLSEDIL 123 + + L Sbjct: 112 RGGSFNIDNSGTVVDKDGNKL 132 >gi|150019058|ref|YP_001311312.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905523|gb|ABR36356.1| protein of unknown function DUF1078 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 34/148 (22%), Gaps = 28/148 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 + +F A++ N ++ + ++ N Y D Sbjct: 1 MFNIFATAKSGMNAYQEKLDYLSNDLVNISTTGYKSTDVNFKDLLTESLDRRGTPLVEKK 60 Query: 44 TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 I+ V + + NK L + + AL + Sbjct: 61 AITGTGVKLGVNYANNKQ---GNLLTTGGKTDLAIDGKGYFAL------SKEDGSIVYTR 111 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + + + + A Sbjct: 112 DGNFKIDSNGALVDSNGTKVYVQYENGA 139 Score = 44.6 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 67/230 (29%), Gaps = 4/230 (1%) Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 ++ K + L R + + + ++ + + K + Sbjct: 27 VNISTTGYKSTDVNFKDLLTESLDRRGTPLVEKKAITGTGVKLGVNYANNKQGNLLTTGG 86 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 L I +K I T N + SN + + G+ N + Sbjct: 87 KTDLAIDGKGYFALSKEDGSIVYTRDGNFKIDSNGALVDSNGTKVYVQYENGASEGNPAL 146 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDSHDLHMKSQVVFNH- 431 + + + T+ + ++ S + ++ Sbjct: 147 DREKMSIDKDGGISMEVDGQVAKIGTIPIFTAIGDKSFIPIGNSYFVPSSDAQVTLSSNY 206 Query: 432 -ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 I + V+ E S ++ ++++ +S+K + D + +++ ++ Sbjct: 207 NIEQGMLEGSNVDAGETFSDIVLTQRAFQLSSKAVTTADDLW-SMINNMR 255 >gi|188589304|ref|YP_001920228.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3 str. Alaska E43] gi|188499585|gb|ACD52721.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E3 str. Alaska E43] Length = 256 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 10/242 (4%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N TS + D S KG + + + + Sbjct: 23 SNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + K IA + + DG I + + +GG Sbjct: 83 TTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEGGMSEG 142 Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++++ + I+ D PV + + N ++ + + Sbjct: 143 NPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVGDKAFIAIGNNY--FVASDDAQI 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I + V+ E + +I ++++ +S+K I D++ ++ G Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTAEIFTDIISTQRAFQLSSKGITTADEVWG-MING 253 Query: 479 VK 480 ++ Sbjct: 254 MR 255 Score = 43.9 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 10/129 (7%), Positives = 28/129 (21%), Gaps = 10/129 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53 + +F AQ+ N ++ + ++ N Y D + V Sbjct: 1 MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE 112 + + + + A + + L+ Sbjct: 61 AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120 Query: 113 SYSKNLSED 121 + + Sbjct: 121 GTLVDARGN 129 >gi|189426355|ref|YP_001953532.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ] gi|189422614|gb|ACD97012.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ] Length = 145 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46 M L N + + + I N+ N + + Y R+D + + Sbjct: 1 MDLFTAMNTSSSALTAERTRMNLISSNLANVNTTRTPEGGPYKRKDAVFAAT 52 >gi|118474843|ref|YP_891880.1| flagellar basal body rod protein FlgC [Campylobacter fetus subsp. fetus 82-40] gi|118414069|gb|ABK82489.1| flagellar basal-body rod protein FlgC [Campylobacter fetus subsp. fetus 82-40] Length = 164 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 M+ L+ F+ + + + I NI NA+ + Y RR+ + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKA 51 >gi|117619148|ref|YP_857342.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560555|gb|ABK37503.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 248 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + + A N+ NA+ + R Sbjct: 1 MDHLLYIAMSGAKESMNSLAVRSNNLANANTTGFKSDFEQARSMQAFGEGLPTRVFAMAE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +N+ +L + Q + A+++ + L+ S + Sbjct: 61 RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114 Query: 117 NLSEDILGKTVIDN 130 + + Sbjct: 115 TSTGLNVVDDGGQP 128 Score = 43.1 bits (99), Expect = 0.099, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + VN+ +E++ LI++++ + K++ ++ Sbjct: 188 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236 >gi|149173758|ref|ZP_01852387.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] gi|148847288|gb|EDL61622.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] Length = 274 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 17/181 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 ++ + S + + N+ NA+ ++ R + ++P Sbjct: 18 MIYGMYLSAQGAEANSVRLDVLSNNMANANTTSFKRDVPIFRVNPPHDQHEGALNPLPGD 77 Query: 48 --ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 + ++ S + L +S Q F + + N S + Sbjct: 78 LENHSGGISLESITTDFEPGSLITTNSEFDLALKGQGFFQVGNAQESFLTRNGSLSIDGD 137 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + L+ D V A V + + K +L + Sbjct: 138 RRLVTADHGMPILTTDGREIKVPIEASHVAITPDGVVTPLDADDQPMGKLGQLAVVMPGA 197 Query: 166 F 166 Sbjct: 198 L 198 Score = 39.2 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +I++ + G N EE+ L+ + + + +I D+ L LL+ + Sbjct: 223 NIAQGFLEASGTNSVEEMMELVTSSRMFESNINMIKLQDESLGRLLQSM 271 >gi|301631992|ref|XP_002945075.1| PREDICTED: flagellar basal-body rod protein flgC-like [Xenopus (Silurana) tropicalis] Length = 134 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++FN + + + SQ+ + N+ N D Y R + +P Sbjct: 1 MSIFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTTPMGSDSAA 60 Query: 55 QRSENK 60 Sbjct: 61 GVRVRS 66 Score = 38.1 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E Y N VN EE+ +I +SY + +++ +L L+ Sbjct: 88 EGYVNHSNVNAVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQM 132 >gi|288870659|ref|ZP_06114878.2| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866377|gb|EFC98675.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 248 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 7/85 (8%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L+ +N + M + + + E+ L++ + Sbjct: 165 NPDGLVPVGKNLYSTGAASGEWIPIEDMDETQAGSRLLTGTLELSSTYVPTEMINLLQAQ 224 Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480 +++ ++++++ D+M + ++ ++ Sbjct: 225 RAFQLNSRIVSAADQM-EEMINNLR 248 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 8/111 (7%), Positives = 22/111 (19%), Gaps = 14/111 (12%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVTVVTQRSENKNM 62 N + N+ N Y + + V Sbjct: 1 MNAFQSELDVTANNMANVSTPGYKVLRSSFDDLLYTQMDTKNANQMVGHGVKTNGAETVF 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + L +++ A++ ++ + S Sbjct: 61 EQGIFEKTERELDFAILGKAYFAVES---ENEDAEEPYYTRDGSFQISATD 108 >gi|158320510|ref|YP_001513017.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii OhILAs] gi|158140709|gb|ABW19021.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii OhILAs] Length = 147 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 MS+ N + + + +NI NA+ Y R+ + Sbjct: 1 MSIFNSLNISASGLTAERLRMDIATKNIANANTTRTSNGTPYRRQVVVFKT 51 >gi|89902475|ref|YP_524946.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens T118] gi|89347212|gb|ABD71415.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens T118] Length = 134 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTV 52 MS+ ++FN + + + SQ+ + N+ NAD Y R + P Sbjct: 1 MSMFSIFNVSGSAISAQSQRLNVVASNLANADAVAGPDGQGYKGRQVVFETVPMGSDA 58 Score = 37.3 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN EE+ +I +SY + +++ +L L+ Sbjct: 93 QSNVNPIEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQM 132 >gi|330953726|gb|EGH53986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7] Length = 113 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 27/110 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A+ +I N+ N + Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 46 -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88 V +V + L ++ + + F + + Sbjct: 61 ELPSGLQLGTGVRIVGTQKN---FNAGSLQTTNNPLDLAVNGRGFFQVTQ 107 >gi|217076898|ref|YP_002334614.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] gi|217036751|gb|ACJ75273.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] Length = 235 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 28/136 (20%), Gaps = 15/136 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN-- 49 + A + ++ NI NA+ Y + P+ Sbjct: 1 MYKGVYLASMGMLADITKLDTLSNNISNAETIGYKADNLAFKTYLEKRLHSFKPMPQEKK 60 Query: 50 VTVVTQRSENKNMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 V + + + + I + F + Sbjct: 61 VEIKDIGKFEQAVILDEVKTDFSQGNIEHTENMLDFAIDGSGFFVVEKNGEKLYTRAGNF 120 Query: 108 RDSLESYSKNLSEDIL 123 + S + + + Sbjct: 121 KISSDGFLVTSEGYYV 136 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 23/47 (48%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + Y V++ +E+ +I+ + Y + +K + D++L + Sbjct: 184 ILQGYVEKSNVDIVKEMVKMIEANRHYEVLSKAVTVHDELLNKSINS 230 >gi|332704840|ref|ZP_08424928.1| flagellar basal body rod protein [Desulfovibrio africanus str. Walvis Bay] gi|332554989|gb|EGJ52033.1| flagellar basal body rod protein [Desulfovibrio africanus str. Walvis Bay] Length = 126 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 6/63 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58 M++ + + Q N+ N + + + + V V R Sbjct: 1 MNISPSLQ----ALDAVAIQLMVTANNVANVNTEEFRAARVDLEDGYQGQGVRVADIRRR 56 Query: 59 NKN 61 + Sbjct: 57 SDQ 59 Score = 37.7 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + +L EL+ L++ E +Y + +++ +M Sbjct: 80 EGWVQGSNTDLAVELTRLMREEATYTANLRVMRTAHEM 117 >gi|121533766|ref|ZP_01665593.1| flagellar basal-body rod protein FlgB [Thermosinus carboxydivorans Nor1] gi|121307757|gb|EAX48672.1| flagellar basal-body rod protein FlgB [Thermosinus carboxydivorans Nor1] Length = 164 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 5/23 (21%), Positives = 8/23 (34%) Query: 23 SIVRNIENADNKNYVRRDTMTTI 45 I NI N + + R + Sbjct: 57 VISNNIANVNTPGFKRSEVHFEE 79 >gi|23008562|ref|ZP_00049955.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 126 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 9/41 (21%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 A + I NI N + + T Sbjct: 3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDL 43 >gi|149195179|ref|ZP_01872270.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus TB-2] gi|149134731|gb|EDM23216.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus TB-2] Length = 165 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 M+ L F+ + + + I NI NA+ + Y R++ + P Sbjct: 1 MAFLNSFDISGYGLSAQRFRINIISENIANANTTRTPEGGPYRRKEVIFKAIP 53 >gi|258514025|ref|YP_003190247.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] gi|257777730|gb|ACV61624.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/144 (7%), Positives = 22/144 (15%), Gaps = 27/144 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ N ++ + N+ N + + + Sbjct: 1 MIRGIYSGAAGMNVLQEKMNVMANNLANVNTNGFKMDQAVVKSFNEQLINLIDTGKDIRK 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 VT N V + F + Sbjct: 61 LRPIGNFCHGVTVDEINTYFTQGVFQQTGHDTDLALDGEGFFRV-------SGAEGDYYT 113 Query: 103 YISKLRDSLESYSKNLSEDILGKT 126 E Y L Sbjct: 114 RDGAFSLDNEGYLVTSRGYTLMGQ 137 Score = 43.1 bits (99), Expect = 0.097, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 ++ + + + V L E++ +I V ++Y S KL+ D++L + Sbjct: 189 ENEADAGVYDATNFTLKQGFLEKSNVELVNEMTDIIAVSRAYETSQKLMQVQDELLGKAV 248 Query: 477 E 477 Sbjct: 249 N 249 >gi|255025674|ref|ZP_05297660.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL J2-003] Length = 63 Score = 49.6 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + ++ES S+ GVN+ EE++ +++ + Y + K + + M++ LL Sbjct: 2 SSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLA 61 Query: 478 GV 479 + Sbjct: 62 ML 63 >gi|306518947|ref|ZP_07405294.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-32g58] Length = 182 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 42/171 (24%), Gaps = 12/171 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + +F ++ + + I NI N+D+ Y + + + + Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + + A + ++ + + Sbjct: 49 LNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 + N + + + + + + I + +S + Sbjct: 109 YTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159 >gi|116626491|ref|YP_828647.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] gi|116229653|gb|ABJ88362.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] Length = 241 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/209 (9%), Positives = 42/209 (20%), Gaps = 15/209 (7%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRD------TMTTISPENVTVV--TQRSENK 60 A + + + N+ NA Y T + + Sbjct: 7 IAASGLRARMESLDLLANNVANASTGGYKADREFYSLYTAPEAAGDGSLSTMPVIERPWV 66 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + +LH +A+ + F + + R + + Sbjct: 67 DHSQGILHTTGNALDVAISGKGF-------FTVNGPSGPLYTRNGSFRLAADGKLTTADG 119 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + AR+ + A + N Sbjct: 120 YPVRDPQGTALTLQTTRPVEIARDGTVTQDGAIVGKLEIVDFTSTAGLSKQGSNYFRADP 179 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIST 209 + A D Q+ L + + Sbjct: 180 SLKSAPAADASLQQGSLEASNTGSAEAAV 208 >gi|319650828|ref|ZP_08004965.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] gi|317397426|gb|EFV78127.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 35/144 (24%), Gaps = 4/144 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + F A + ++ + N+ NA+ + T PE + + + Sbjct: 1 MFRGFYTAASGMLAQQRRTEVLTNNMANANTPGFKADQTSLRAFPE-MLLQRIGQKTVPT 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + +G + D ++ L + N + Sbjct: 60 EKGLNLPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDL---NLPVNPDTGL 116 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQ 146 G A + T Sbjct: 117 SGSVFYTAAGIDGEQRYTRNGNFT 140 Score = 39.2 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 48/212 (22%), Gaps = 8/212 (3%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L + V + + + + N++ D Sbjct: 62 GLNLPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDLNLPVNPDTGLSGSVF 121 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + Q + G + L + I D F + Sbjct: 122 YTAAGIDGEQRYTRNGNFTLDGEGYLTTASGLYILDDAGERIQLSSDRFKVSEDGVITGE 181 Query: 394 INTNVTLLEYARN--------SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445 L G + +Q V + + Y V+ Sbjct: 182 AGETARLGIMYAQNPESLRKEGDGLFAVTEESVLENAYNAQNVQFKLQQGYLERSNVDAS 241 Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ ++ +S+ + K++ D+ ++ Sbjct: 242 RTMTDMMTAYRSFEANQKVLQAYDRSMEKAAN 273 >gi|147678427|ref|YP_001212642.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI] gi|146274524|dbj|BAF60273.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI] Length = 133 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 12/34 (35%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + A+ + I NI NA+ + + Sbjct: 13 GLDAAALRHRVIANNIANANTPGFKKSAVEFESL 46 >gi|225871944|ref|YP_002753398.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225793888|gb|ACO33978.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 245 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 26/129 (20%), Gaps = 5/129 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----VTVVTQRS 57 + + + A SQ S+ N+ NA + + + Sbjct: 1 MESGYYAALTGLLARSQALDSVASNLANAGTAGFRAQQDYFRDVLAGPRANDSQLDQTVD 60 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + +L I N +L S + Sbjct: 61 NYGVLGGTLLDLAQGPIQATGNPLDLAIQGGGFFEVQTPNGVRYTRDGRLVRSTKGVLIT 120 Query: 118 LSEDILGKT 126 D + Sbjct: 121 GDGDPVLNA 129 >gi|134300249|ref|YP_001113745.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens MI-1] gi|134052949|gb|ABO50920.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens MI-1] Length = 145 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTI 45 M L F + + + + I NI N + + Y RR + Sbjct: 1 MGLFDSFGISASGMTSERLRLDLISNNIANMNTPSRPNDPNSPVYRRRVPIFAE 54 >gi|224373713|ref|YP_002608085.1| flagellar basal body rod protein FlgC [Nautilia profundicola AmH] gi|223589296|gb|ACM93032.1| flagellar basal-body rod protein FlgC [Nautilia profundicola AmH] Length = 165 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 M F+ + + + I NI NA+ + Y R++ + P Sbjct: 1 MGFFNSFDISGYGLSAQRFRINIISENIANANTTRTDEGGPYRRKEVIFKAVP 53 >gi|222084863|ref|YP_002543392.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722311|gb|ACM25467.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 138 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 10/63 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI---SPENVTV 52 L A A + S + + NI NA D Y R+ VT Sbjct: 4 LSAALKIAGSGLEAQSTRLRVVSENIANARSTGDTPGADPYRRKTVTFGAELDRANGVTT 63 Query: 53 VTQ 55 V Sbjct: 64 VGV 66 >gi|110677662|ref|YP_680669.1| flagellar basal body rod protein FlgF [Roseobacter denitrificans OCh 114] gi|109453778|gb|ABG29983.1| flagellar basal-body rod protein FlgF, putative [Roseobacter denitrificans OCh 114] Length = 237 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 10/117 (8%), Positives = 29/117 (24%), Gaps = 4/117 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ + NI NA + + + + ++V + S + + Sbjct: 12 QSGLM---KEMRVVANNIANAATSGFRQEGVIFSEYVKSVDGASSLSMGQA-DARQTSFA 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 A+ Q F + + + + + Sbjct: 68 QGALTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDGYRVLDAG 124 >gi|46581297|ref|YP_012105.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450718|gb|AAS97365.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234961|gb|ADP87815.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris RCH1] Length = 125 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 2/52 (3%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQR 56 + + NI N + + T P V + R Sbjct: 3 IDTGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYETGPGGEGVRLGEIR 54 Score = 40.8 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 18/42 (42%) Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + E+ +++ ++++ + I D M +L+ + Sbjct: 83 EGSNTDTAREMVSMMETQRAHEANVASIRAHDDMTGVVLDIM 124 >gi|229825259|ref|ZP_04451328.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] gi|229790631|gb|EEP26745.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] Length = 258 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/182 (9%), Positives = 47/182 (25%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 +G + +A + + N +DG Sbjct: 73 VGEVFTDYSQGALRDTAGKYDLALSGEGFFAVRYVDKNGNESTKYTRDGNFRLTKDGHVT 132 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 ++ S + + + ++++ + Sbjct: 133 DVYGNQLRTESGVLRVPLDSEDISVGIDGTVSVNNQVIDKIKIVDFENYDYIEKFGDNLY 192 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + Y VN E+ LI + ++Y K+I +D ++++ + Sbjct: 193 QTVEGATEKESEAQVLQGYIEQSNVNSVREMVNLITITRAYEAGQKMIQSSDSIMESAVN 252 Query: 478 GV 479 V Sbjct: 253 SV 254 Score = 42.7 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 13/146 (8%), Positives = 34/146 (23%), Gaps = 28/146 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L A N ++ + N+ NA + + + Sbjct: 1 MLRSLYTAYTGMVNEQRRMDIMTNNLANATTAGFKMESSSSQSFDRVLGIKIRDVSEAFN 60 Query: 46 ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 V V + L + + F A+ + ++ Sbjct: 61 DHSIGQMSLGVKVGEV---FTDYSQGALRDTAGKYDLALSGEGFFAV--RYVDKNGNEST 115 Query: 100 PTHYISKLRDSLESYSKNLSEDILGK 125 R + + + ++ + L Sbjct: 116 KYTRDGNFRLTKDGHVTDVYGNQLRT 141 >gi|260437440|ref|ZP_05791256.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810072|gb|EFF69277.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 256 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 55/181 (30%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 IG E +A + T V + + +G + Sbjct: 73 IGETYTDYSTGNLRETGNTYDLALSGNGFFAISYADKNGTESVRYTRDGSFTVNSEGILM 132 Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417 +K + + + G + S N++ I + + + ++ Sbjct: 133 TKDGDFVLGDDGGLITIPVGTEVSINESGIIEADGEEVARLQITDFEDYDYLKKFGENMY 192 Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ + + Y + VN+ E+ +I + + Y S K+I D L+ + Sbjct: 193 TAIDGATTKAAQGKVYQGYLESSNVNVVSEMVNMITIARDYESSQKVIQSIDSTLERAVN 252 Query: 478 G 478 Sbjct: 253 L 253 Score = 43.1 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 11/162 (6%), Positives = 29/162 (17%), Gaps = 22/162 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ N ++ + N+ N+ Y + + Sbjct: 1 MVRALYTGATGMVNEMKRLDVVSNNLANSATTAYKKEGATSQAFKDMLAIKINDETDSYI 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 V + L + F A+ + + + Sbjct: 61 DRPIGYMSLGVKIGETYTDYSTGNLRETGNTYDLALSGNGFFAI--SYADKNGTESVRYT 118 Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + E D + V + Sbjct: 119 RDGSFTVNSEGILMTKDGDFVLGDDGGLITIPVGTEVSINES 160 >gi|90418400|ref|ZP_01226312.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] gi|90338072|gb|EAS51723.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] Length = 241 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 43/181 (23%), Gaps = 2/181 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + S++ +I N+ N+ + + ++ Sbjct: 1 METALPVALSAQLAMSKRLDTIAHNVANSRTTGFRAEEIKFEELISLSAPEPVSFASEG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 S + Q + A N ++R + + + +S Sbjct: 60 -TTYFSTRSGEMTQTGNPLDMAVDGDAFFAFQGPNGPVYTRDGRMRINAQGMVETISGYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L + + I + + + + L N + A Sbjct: 119 LVDVGGAPLQVDPNAGPVTITRDGMITQNGAQAGAVGLFQLPAGAKLTRFENSGLIPDRA 178 Query: 183 S 183 + Sbjct: 179 A 179 >gi|306820921|ref|ZP_07454541.1| flagellar basal body and hook protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551035|gb|EFM39006.1| flagellar basal body and hook protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 372 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/326 (11%), Positives = 93/326 (28%), Gaps = 25/326 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNY----------------VRRDTM--TT 44 + A + Q I NI N D + R + Sbjct: 1 MFRGIYTASSAMQTKQNQIEIISNNISNVDTTAFKKDVGVTEAFSEKLLMKRENVEGYLR 60 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 + NV V + +N + + + + + + + ++ D+ Y + + Sbjct: 61 ANSNNVKVSNKTLKNGLVKTDIEISRGYLTLEDKNGKGYYKSASVVRDDEGYLRTVYNEY 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + + + L ++ + + E V N +++ E I + Sbjct: 121 NS--NDITKFGAYLLDENSNRINVPEGEITVDNNGNIVSGGRQVAKLIVPEARKSIGTIN 178 Query: 165 R-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223 L + ++N + +++ H L+ ++ I V + Sbjct: 179 SGNLIDRVMINFNQGAQERTENPMHISLEGNGFFKVRLDSTDAIKYSRSG----VFTLDN 234 Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283 L + + + E + V + S + + S + +I L + Sbjct: 235 SGVLKDFLGNIVLSEDGSEIKVPTNSRSLEFKSDGSVVSLNSDGQREQIAKLALVDIYNK 294 Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAG 309 Q ++ + + + P G Sbjct: 295 EDMQKYGHSYMQMTNNAQAIEHPFGG 320 Score = 39.6 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 26/269 (9%), Positives = 69/269 (25%), Gaps = 7/269 (2%) Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268 VY + + E N V + +G +VS + A Sbjct: 106 VRDDEGYLRTVYNEYNSNDITKFGAYLLDENSNRINVPEGEITVDNNGNIVSGGRQVAKL 165 Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328 + + + + I+ + + + Sbjct: 166 IVPEARKSIGTINSGNLIDRVMINFNQGAQERTENPMHISLEGNGFFKVRLDSTDAIKYS 225 Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388 + + V + N DG + +++ D + Sbjct: 226 RSGVFTLDNSGVLKDFLGNIVLSEDGSEIKVPTNSRSLEFKSDGSVVSLNSDGQREQIAK 285 Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 + I + +Y +++ + H + + Y V+ +E+ Sbjct: 286 LALVDIYNKEDMQKYGH---SYMQMTNNAQAIEHPFG----GKVLQGYLEKSNVSAIDEM 338 Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 +I++ + + K+I D+++Q Sbjct: 339 VDMIQMYRGFESDQKVINAYDQIMQKAAN 367 >gi|205373369|ref|ZP_03226173.1| flagellar basal body rod protein FlgC [Bacillus coahuilensis m4-4] Length = 149 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 10/58 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPE 48 MS+ N + + + I N+ NAD Y R+ + + Sbjct: 1 MSIFQSINISTSALTAQRLRMDVISSNVANADTTRGEYVNGEWQPYTRKSVVLQENQG 58 >gi|150395479|ref|YP_001325946.1| flagellar basal body rod protein FlgF [Sinorhizobium medicae WSM419] gi|150026994|gb|ABR59111.1| flagellar basal body rod protein [Sinorhizobium medicae WSM419] Length = 241 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ NI N++ + + + ++ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ L + A+ + F + + D + + + Sbjct: 60 -EEFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +I AD I + + Sbjct: 119 VLDAG--------GAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDN 170 Query: 183 SKHDAHD 189 S Sbjct: 171 SAVMPAA 177 >gi|39934722|ref|NP_946998.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris CGA009] gi|39648572|emb|CAE27093.1| possible flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris CGA009] Length = 273 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 71/243 (29%), Gaps = 9/243 (3%) Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291 K + + P + V+ + + +G I + Sbjct: 30 NAQTTAFKATNTAFSDLIYPPQVSDTVLWRSVLTNGQQGSISYDPVSTHMAIGGEGYFTV 89 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351 E + S + + G F ++ + I + L Sbjct: 90 EAPSGVSASGQPTFSTSETTYTRRGDFELKNGYLVNGAGYYLMGAQIDPVTGAVGSTGPL 149 Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 + S + L +++L+ S + + ++ +A Sbjct: 150 QFDTSTALPDLGVLQSLSVSSSGKLQGTYSKGQTVDVASL-------SIASFAGQGFMKQ 202 Query: 412 EKNR--SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 S + V + S V++ ++++ +++ +Q+Y+ ++++ ++ Sbjct: 203 GSGGTFSPTPQSGPALFVNAGTVVGSALEASNVDIADQMTTMVQAQQAYSACTRVVIASN 262 Query: 470 KML 472 +M+ Sbjct: 263 EMM 265 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 4/132 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M L A S F +I N+ NA + +T + V Sbjct: 1 MGSLGALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYPPQVSDTVLWRS 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + +I + E + + S +Y++ Sbjct: 61 VLTNGQ----QGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDF 116 Query: 121 DILGKTVIDNAE 132 ++ +++ A Sbjct: 117 ELKNGYLVNGAG 128 >gi|291558217|emb|CBL35334.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 235 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 38/159 (23%), Gaps = 7/159 (4%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS-- 71 N + +I N+ N + Y + + E + +V+ R + F + S Sbjct: 1 MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60 Query: 72 ----SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKT 126 S+ + N + + E Y + Sbjct: 61 NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGRVLGQ 120 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + + +++ L Sbjct: 121 SGEIYIGNDDFIVDNEGNILNENGEVIEKLRLSYIPENA 159 >gi|187935622|ref|YP_001885067.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str. Eklund 17B] gi|187723775|gb|ACD24996.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum B str. Eklund 17B] Length = 256 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 10/242 (4%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N TS + D S KG + + + + Sbjct: 23 SNDLVNTSTTGYKATDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + K IA + + DG I + + + G Sbjct: 83 TTGIKTDIAIDGKGYIASVQQDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEDGMSEG 142 Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++++ D I+ D+ PV + + N ++ + + Sbjct: 143 SPKLSSEDISIDGDGGISTKVDNQYVKVGQIPVFTAIGDKAFVAIGNNY--FVASDDAQI 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I + V+ E + +I ++++ +S+K I D++ ++ G Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTSEIFTDIISTQRAFQLSSKGITTADEVWG-MING 253 Query: 479 VK 480 ++ Sbjct: 254 MR 255 Score = 41.9 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 16/46 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 + +F AQ+ N ++ + ++ N Y D + Sbjct: 1 MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKATDVQFSDLLT 46 >gi|255591998|ref|XP_002535647.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] gi|223522413|gb|EEF26734.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] Length = 166 Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 5/35 (14%), Positives = 9/35 (25%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48 +I N+ N + Y R + Sbjct: 1 MQAQQLNVETIASNLANVNTAGYKRSRVSFSDLVA 35 >gi|15964409|ref|NP_384762.1| flagellar basal body rod protein FlgF [Sinorhizobium meliloti 1021] gi|307311551|ref|ZP_07591192.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] gi|17380373|sp|O54248|FLGF_RHIME RecName: Full=Flagellar basal-body rod protein flgF gi|15073586|emb|CAC45228.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306899568|gb|EFN30197.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] Length = 241 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ NI N++ + + + ++ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ L + A+ + F + + D + + + Sbjct: 60 -EEFLSTKTGALARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKGYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +I AD I + + Sbjct: 119 VLDAG--------GAPIQLNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDN 170 Query: 183 SKHDAHD 189 S Sbjct: 171 SSVMPAA 177 >gi|330893070|gb|EGH25731.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. mori str. 301020] Length = 202 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 8/157 (5%), Positives = 23/157 (14%), Gaps = 33/157 (21%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------S 46 + +I N+ N + Sbjct: 21 KTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQL 80 Query: 47 PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V +V + L ++ + + F + + Sbjct: 81 GTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTVAYSRDGT 131 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + L ++ Sbjct: 132 FHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGT 168 >gi|188586014|ref|YP_001917559.1| flagellar basal-body rod protein FlgB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350701|gb|ACB84971.1| flagellar basal-body rod protein FlgB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 134 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 6/33 (18%), Positives = 11/33 (33%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 N +++ I NI N + + R Sbjct: 13 SLNGTTKRHEVISNNIANVNTPGFKRGRVDFEE 45 >gi|254463222|ref|ZP_05076638.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium HTCC2083] gi|206679811|gb|EDZ44298.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium HTCC2083] Length = 126 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 16/49 (32%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61 S + + NI NAD Y R+ +S + V R Sbjct: 14 GLKAQSARLRHVSENIANADTPGYHRKIVSFDLSRDTGQVTIGRLSLDQ 62 >gi|197104382|ref|YP_002129759.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] gi|196477802|gb|ACG77330.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] Length = 245 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 10/156 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52 + + ++ I NI N D + M P+ V Sbjct: 1 MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 VT ++ L + Q F L+ + + Sbjct: 61 VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN 120 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + + V ++ ++I Sbjct: 121 GSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERI 156 >gi|254458686|ref|ZP_05072110.1| flagellar basal-body rod protein FlgC [Campylobacterales bacterium GD 1] gi|207084452|gb|EDZ61740.1| flagellar basal-body rod protein FlgC [Campylobacterales bacterium GD 1] Length = 163 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 MS L+ F+ + + + +I +NI NA + Y R++ + Sbjct: 1 MSFLSSFDISGYGLSAQRVRVNTISQNIANAQTTRTEEGGPYRRKEVVFKA 51 >gi|251778946|ref|ZP_04821866.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083261|gb|EES49151.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 256 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 70/242 (28%), Gaps = 10/242 (4%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N TS + D S KG + + + + Sbjct: 23 SNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + K IA + + DG I + + +GG Sbjct: 83 TTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEGGMSEG 142 Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + ++++ + I+ D PV + + N ++ + + Sbjct: 143 NPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVGDKAFIAIGNNY--FVASDDAQI 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + + I + V+ E + +I ++++ +S+K I D++ ++ Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTSEIFTDIISTQRAFQLSSKGITTADEVWG-MINS 253 Query: 479 VK 480 ++ Sbjct: 254 MR 255 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 9/129 (6%), Positives = 28/129 (21%), Gaps = 10/129 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53 + +F AQ+ + ++ + ++ N Y D + V Sbjct: 1 MFNIFANAQSGMSAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE 112 + + + + A + + L+ Sbjct: 61 AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120 Query: 113 SYSKNLSED 121 + + Sbjct: 121 GTLVDARGN 129 >gi|255099413|ref|ZP_05328390.1| flagellar basal-body rod protein [Clostridium difficile QCD-63q42] Length = 134 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISP------E 48 MS+ + + + S + I N+ N + + Y R+ + Sbjct: 1 MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGML 60 Query: 49 NVTVVTQR 56 V V + Sbjct: 61 GVKVTSVE 68 Score = 38.1 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-- 430 D+I+ + N + A V+ E N +G L + D + V++ Sbjct: 22 DIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSVEDDKSPLKKVYDPS 81 Query: 431 ---HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Y VN+ E++ LI ++Y+ + + M+ LE Sbjct: 82 HPDAKPNGYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKALEI 132 >gi|313673204|ref|YP_004051315.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939960|gb|ADR19152.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] Length = 206 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 I + V++ +E+ I + + K + D+ML ++ V Sbjct: 157 EILSGFLEASNVDIAKEMVESITNFRYIQANVKTVKTVDEMLGNIVNIV 205 Score = 41.2 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 10/154 (6%), Positives = 35/154 (22%), Gaps = 10/154 (6%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68 A + + ++++ NI N + + + V + + S Sbjct: 8 ALSAISAGNKKYGVTANNIANISSTAFKGKIAHLKEFSKGGVELYSVTSNEGI---GYFI 64 Query: 69 AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES------YSKNLSEDI 122 + + + + + + + Sbjct: 65 NTGRPLDLAINGDGYFKFTDGNKEVYSRMGILSIDKNGEMVDVSGRRVGINVGTSPDNVH 124 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + V+ + + D++ EI Sbjct: 125 IDNKGNVYVDGEVKGKLQIYNQNGGVVPDSNYEI 158 >gi|134300226|ref|YP_001113722.1| hypothetical protein Dred_2387 [Desulfotomaculum reducens MI-1] gi|134052926|gb|ABO50897.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 257 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V +++ + V+ +E+ +I V + Y S KLI D++L + V Sbjct: 196 GVAEAAVSTTVTQGWLEKSNVDPVQEMINIIPVARIYESSQKLIQIQDELLDKAINQV 253 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 8/145 (5%), Positives = 27/145 (18%), Gaps = 26/145 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 +L N N + ++ N+ N Y + + + + Sbjct: 1 MLRGLYITMNSLNVQQAKLNNVTNNLSNLSTTGYKKNNMVDSQFAESLQLALENHGPGGK 60 Query: 46 ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + + + + L + +++ Sbjct: 61 RQPIGKGILGNMITQVHIDYGQGPLTETGKLTDMALEGNGYFVVED------ENGEQFLT 114 Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127 + E + Sbjct: 115 RDGSFHVNEEGALLTGDGFRVLGEG 139 >gi|167645397|ref|YP_001683060.1| flagellar basal body rod protein [Caulobacter sp. K31] gi|167347827|gb|ABZ70562.1| flagellar basal body rod protein [Caulobacter sp. K31] Length = 245 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/191 (8%), Positives = 40/191 (20%), Gaps = 3/191 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60 + + ++ + NI NA+ + M P TV Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEQLMVRTEPAKPARTVGGSYPVKF 60 Query: 61 NMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + D V A+ Q + + S E + Sbjct: 61 VLDDGVARDFSQGALTQTGGAFDLAIEGQGFFKVSTAGGERYTRDGRFTMSPEGKLITQN 120 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + + + A++ ++ + + ++ + Sbjct: 121 GASVLDEGGGEIIVDPLKGPATIARDGTVSQGAERLGKIGVVRPTDLAAFRKDGDNLYRN 180 Query: 180 KTASKHDAHDF 190 T Sbjct: 181 TTNDTPQPATN 191 >gi|110632662|ref|YP_672870.1| flagellar basal body rod protein FlgF [Mesorhizobium sp. BNC1] gi|110283646|gb|ABG61705.1| flagellar basal body rod protein [Chelativorans sp. BNC1] Length = 239 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 52/218 (23%), Gaps = 7/218 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENK 60 + A + ++ A++ N+ NA + + ++ V+ S Sbjct: 1 MQTGLYVALSSQMALERRLATLADNVANAGTVGFRAGGITFSDVMSGLSEEAVSFVSTGS 60 Query: 61 NMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 N +D L S ++ A++ + T + +LE ++ Sbjct: 61 NFYDTRAGGLRETGSPFDFAVQGDAWFAVETPAGPVMTRDGRFTMRETGELVTLEGHAVL 120 Query: 118 LSEDI--LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + E ++ + Sbjct: 121 DAGGAPLVLDPQAGPPEAGADGILRQNGQLIGAIGLFSFTPGPNATRFGNSGFLPDTRPQ 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 + + D + ++ +I + Sbjct: 181 PVVDQPDVGIAQGFLEDSNVNPVNEMMRLIQVQRTFEQ 218 >gi|262652|gb|AAB24738.1| flagellar basal body proximal rod protein [Caulobacter vibrioides] Length = 248 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 10/138 (7%), Positives = 25/138 (18%), Gaps = 17/138 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52 + + ++ + NI NA+ + T V Sbjct: 1 MDNALYVGLSRQMTVRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V +N + F ++ + + E Sbjct: 61 VMDTGVRRNFTQGPMTKTGGDYDLAINGMGFFKVQ-------ANGGERYTRDGRFTTNPE 113 Query: 113 SYSKNLSEDILGKTVIDN 130 + + Sbjct: 114 GILVTQAGAPVLDDGGGQ 131 Score = 36.9 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 12/167 (7%), Positives = 37/167 (22%), Gaps = 9/167 (5%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + G+ + ++ + + Sbjct: 70 FTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGG 129 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + L + + + T + N + Sbjct: 130 GQITIDPR-LGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLY--------RN 180 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 V I + V E++ LI+++++Y K++ Sbjct: 181 TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMM 227 >gi|260429533|ref|ZP_05783510.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] gi|260420156|gb|EEX13409.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] Length = 237 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 6/139 (4%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSENKNMFDKVLHAHS 71 S++ I NI NA Y ++ + + +V + N + L Sbjct: 16 SREMQMIANNIANAATTGYRQQGVVFSEYVRQTDDSGSVAMSAAHVRNTSFEQGALTRTG 75 Query: 72 SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + F ++ N + + + Y+ + D + Sbjct: 76 GQLDLAIEGDGFFLIQTPGGERLTRNGAFAVSAQGDLVTQDGYAVLDAGGAPVFVPPDAS 135 Query: 132 EEVVQNFNTSAREVQKIRA 150 + T + + I Sbjct: 136 DLAFAQDGTMSSKGTPIGQ 154 >gi|83858805|ref|ZP_00952327.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] gi|83853628|gb|EAP91480.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] Length = 244 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 38/171 (22%), Gaps = 22/171 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52 + +Q + NI NA+ + + M P Sbjct: 1 MDNTMLIGLTRQLTLRRQMDVVANNIANANTQGFKAERMMLEPDTSMRARHQDGPNRARF 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V + + ++ L S + + + S + Sbjct: 61 VDEWAMGRDFSQGALTHTSRPLDLAL-------QGDGFFMLETDAGERFTRDGAFTLSPQ 113 Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + +A + +A ++ + +I+ + Sbjct: 114 GELVAGDGARVL-----DAGGAPIILDPAAGQISIGETGIVTQNGQQIAQV 159 >gi|253574271|ref|ZP_04851613.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846748|gb|EES74754.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 300 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/274 (8%), Positives = 64/274 (23%), Gaps = 4/274 (1%) Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267 + N T+ + P + + + ++ + GV + + Sbjct: 21 TVTQNIANLNTPGYKSVNTVARSFPEMLISLMGDKQSGNNKQIGKLVTGVFAEESLPAFT 80 Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327 + +++ + E S K + Sbjct: 81 QGDLKETGKNTDFALISELSLENPETGGPYAFDASGKFVTEDGEVIYQPQAFFAVEDNEG 140 Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387 N + R + + + + N Sbjct: 141 NVRYTRDGSFTVNAAGELRTSTGFRVLDTGGNPIILDAGLSVDTLTSDEAGNLTAVDNTG 200 Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVN 443 G + + + R + ++V + + Y V+ Sbjct: 201 ALVDLGTLGITVVEQPYQLVREGNGVFRVADEEAAGVRELVPGTDGAVVRQGYLEVSNVD 260 Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + L+ +++Y + K+I + D+ L + Sbjct: 261 TAQSMVDLLAAQRAYESNQKIIQYYDRSLDKAVN 294 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 17/40 (42%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42 +L A + ++ ++ +NI N + Y +T+ Sbjct: 1 MLRGLYTAASGMIAEQRRHDTVTQNIANLNTPGYKSVNTV 40 >gi|302392398|ref|YP_003828218.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum DSM 5501] gi|302204475|gb|ADL13153.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum DSM 5501] Length = 145 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 12/34 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 M L + N + + + I NI N + Sbjct: 1 MGLFSGMNVSSSGMTAQRLRMDLISNNIANINTT 34 >gi|332702980|ref|ZP_08423068.1| flagellar basal-body rod protein FlgC [Desulfovibrio africanus str. Walvis Bay] gi|332553129|gb|EGJ50173.1| flagellar basal-body rod protein FlgC [Desulfovibrio africanus str. Walvis Bay] Length = 147 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 M + + A + Q I N+ N + + Y R+ + + Sbjct: 1 MDFMTALDVAASGLTAKRTQLNIISSNLANINTTRTAEGGPYRRKTVVFQTTGT 54 >gi|300722684|ref|YP_003711974.1| flagellar basal-body rod cell-proximal protein [Xenorhabdus nematophila ATCC 19061] gi|297629191|emb|CBJ89787.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 134 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMT-TISPENVTVV 53 MSLL++F+ A + + SQ+ N+ NA Y + + +P + Sbjct: 1 MSLLSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIG 60 Query: 54 TQRSE 58 R Sbjct: 61 GVRVS 65 >gi|56965597|ref|YP_177331.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911843|dbj|BAD66370.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 262 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/174 (6%), Positives = 42/174 (24%), Gaps = 15/174 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ + A + + +I N+ NA+ + RR + + + Sbjct: 1 MSIG---HTAAATLSQLQAKIDTISNNMANAETTGFKRRSASFADVLTSEYLNQPNENRQ 57 Query: 61 N-----------MFDKVLHAHSSAIGQQRLLQSF-EALKEMMSADDHYNNSPTHYISKLR 108 + + + + F ++ + + Sbjct: 58 TPHGLRVGTGAKLAQTQIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFY 117 Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 S ++ L + +++ ++ + ++ Sbjct: 118 FSPQAVGNGLELVTSDGNRVLDSDGEAIVMPGDTVSLEWRDGNLFAQLRNGGEQ 171 Score = 37.3 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 47/198 (23%), Gaps = 5/198 (2%) Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333 L + + Q QL++ G + + + Sbjct: 61 GLRVGTGAKLAQTQIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFYFSP 120 Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393 + + L G V +L + + + Sbjct: 121 QAVGNGLELVTSDGNRVLDSDGEAIVMPGDTVSLEWRDGNLFAQLRNGGEQQVGSFALTR 180 Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 + TL N E + H+ ++ V+L E++ L++ Sbjct: 181 VLRPQTLESGGNNLYVLPELPGVSEEVVAAD-----EHMKQNMLEQANVDLGLEMAELME 235 Query: 454 VEQSYNISNKLIMFTDKM 471 ++ + F D M Sbjct: 236 TQRLLQFQARAYSFADDM 253 >gi|149911701|ref|ZP_01900309.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] gi|149805231|gb|EDM65248.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] Length = 247 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/248 (8%), Positives = 58/248 (23%), Gaps = 14/248 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + + + A N+ N + + R Sbjct: 1 MDNMLYISMSGAKENMNALAVRANNLANVNTHGFKADFEQARSMQAFGEGLPTRVFAITE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 S ++ L +A+ + ++ + NN L S Sbjct: 61 SPGQDFTGGALQQTGNALDVALQGDGWLSVLD------DKNNEGYTRSGSLHMSATGELL 114 Query: 117 NLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + I + Q + ++ A ++ L+ ++ + Sbjct: 115 TSSGRPVLGENGPIIIPTPIEQIQIHADGRIEIRPQGAPANALEQVDQLKLVNPDVRNLV 174 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 +D + + E +S + + + + + Sbjct: 175 KGYDGLFRQADGTPAVVDPNVQVAGGVLETSNVSAVGELTGMINLQRQFEMQIKMMKTAE 234 Query: 235 INFEKMNS 242 N + ++ Sbjct: 235 ENDKASDT 242 >gi|126697817|ref|YP_001086714.1| flagellar basal-body rod protein [Clostridium difficile 630] gi|254973910|ref|ZP_05270382.1| flagellar basal-body rod protein [Clostridium difficile QCD-66c26] gi|255091296|ref|ZP_05320774.1| flagellar basal-body rod protein [Clostridium difficile CIP 107932] gi|255305270|ref|ZP_05349442.1| flagellar basal-body rod protein [Clostridium difficile ATCC 43255] gi|255312954|ref|ZP_05354537.1| flagellar basal-body rod protein [Clostridium difficile QCD-76w55] gi|255515713|ref|ZP_05383389.1| flagellar basal-body rod protein [Clostridium difficile QCD-97b34] gi|255648807|ref|ZP_05395709.1| flagellar basal-body rod protein [Clostridium difficile QCD-37x79] gi|306518922|ref|ZP_07405269.1| flagellar basal body rod protein FlgC [Clostridium difficile QCD-32g58] gi|115249254|emb|CAJ67067.1| Flagellar basal-body rod protein FlgC [Clostridium difficile] Length = 134 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISP------E 48 MS+ + + + S + I N+ N + + Y R+ + Sbjct: 1 MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGML 60 Query: 49 NVTVVTQR 56 V V + Sbjct: 61 GVKVTSVE 68 Score = 37.7 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%) Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-- 430 D+I+ + N + A V+ E N +G L + D + V++ Sbjct: 22 DIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSVEDDKSPLKEVYDPS 81 Query: 431 ---HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 Y VN+ E++ LI ++Y+ + + M+ LE Sbjct: 82 HPDAKPNGYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKALEI 132 >gi|311992327|gb|ADQ26737.1| proximal rod protein [Aeromonas hydrophila] Length = 247 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 31/131 (23%), Gaps = 12/131 (9%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSEN 59 + A + + A N+ NA+ + R Sbjct: 3 LLYIAMSGAKESMNSLAVRSNNLANANTTGFKSDFEQARSMQAFGEGLPTRVFAMAERPG 62 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 +N+ +L + Q + A+++ + L+ S + + Sbjct: 63 QNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQTST 116 Query: 120 EDILGKTVIDN 130 + Sbjct: 117 GLNVVDDGGQP 127 Score = 43.1 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + VN+ +E++ LI++++ + K++ ++ Sbjct: 187 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 235 >gi|315121849|ref|YP_004062338.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495251|gb|ADR51850.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 134 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 10/68 (14%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS---PENVTVVTQRS 57 A + S + I NI NA Y R+ V V Sbjct: 9 QIANSGLTVQSSRMHVISENIANARTTGNTAGSDPYRRKTISFEEVMHEGGGVRVKKVSV 68 Query: 58 ENKNMFDK 65 + ++ Sbjct: 69 DKSPFVEE 76 >gi|311030132|ref|ZP_07708222.1| flagellar basal body rod protein FlgC [Bacillus sp. m3-13] Length = 150 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 13/34 (38%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ N + + + I N+ N D+ Sbjct: 1 MSMFKSMNISSSALTAQRLRMDVISSNMANVDST 34 >gi|218509843|ref|ZP_03507721.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5] Length = 65 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + N + + +++ NI N + Y T + + S Sbjct: 1 MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60 Query: 61 N 61 Sbjct: 61 Q 61 >gi|295111496|emb|CBL28246.1| flagellar basal-body rod protein FlgC [Synergistetes bacterium SGP1] Length = 139 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 11/67 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTT-----ISPEN 49 M + A + +I N+ N + Y RR + Sbjct: 1 MKVFDSMEVAGSALTAHRLWMDTISSNLANINTTRTLSGGPYKRRVPVFAEMLDRTIGGY 60 Query: 50 VTVVTQR 56 + R Sbjct: 61 RDIGGVR 67 Score = 46.2 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VNL E++ ++ ++Y + ++ +M LE ++ Sbjct: 99 NVNLVREMTDMLVASRAYEANLSVVTTAREMWNGALEVMR 138 >gi|290474970|ref|YP_003467854.1| flagellar basal body rod cell-proximal protein [Xenorhabdus bovienii SS-2004] gi|289174287|emb|CBJ81077.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 134 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMT-TISPENVTVV 53 MSLL++F+ A + + SQ+ N+ NA Y + + +P + Sbjct: 1 MSLLSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIG 60 Query: 54 TQRSE 58 R Sbjct: 61 GVRVS 65 >gi|298530645|ref|ZP_07018047.1| flagellar basal-body rod protein FlgC [Desulfonatronospira thiodismutans ASO3-1] gi|298510019|gb|EFI33923.1| flagellar basal-body rod protein FlgC [Desulfonatronospira thiodismutans ASO3-1] Length = 146 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 MS + + + + I N+ NA+ + Y R+ + +P Sbjct: 1 MSFMKSLDIGASALSAERTHLNVISMNLANANTTRTPEGGPYERKSVLFRSTP 53 >gi|307318906|ref|ZP_07598337.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] gi|306895320|gb|EFN26075.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] Length = 241 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/187 (6%), Positives = 39/187 (20%), Gaps = 10/187 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ ++ NI N++ + + + ++ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTRPTKVSYVSEG- 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ L + A+ + F + + + + + Sbjct: 60 -EEFLSTKTGALARTGSALDFAIKGDAWFSIGTPGGPALTRDGRFTLTETGELVTIKGYP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + +I AD I + + Sbjct: 119 VLDAG--------GAPIQLNGGAGEITVGADGAIHQNGVQIALLGLYEADFSKGFMRYDN 170 Query: 183 SKHDAHD 189 S Sbjct: 171 SSVMPAA 177 >gi|220905030|ref|YP_002480342.1| hypothetical protein Ddes_1767 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869329|gb|ACL49664.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 133 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 1/132 (0%) Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 + + +A + + + G L+ Sbjct: 2 SGINTSMQLGASAMNTHSWGMAVSAHNVANVSTPGFEPQRAVYATGPAGQGVRLDAVLQR 61 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 G + + + V + ++ G NL E+ +I + +Y + + Sbjct: 62 NGPVGTGGTAYNAAQAVYDVTAG-LPLEAASPSGTNLAREMVSMISTQHAYKANATTVRT 120 Query: 468 TDKMLQTLLEGV 479 D ML TLL+ Sbjct: 121 ADAMLGTLLDIK 132 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/130 (9%), Positives = 29/130 (22%), Gaps = 5/130 (3%) Query: 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59 MS + + N S A N+ N + + + P V + Sbjct: 1 MSGINTSMQLGASAMNTHSWGMAVSAHNVANVSTPGFEPQRAVYATGPAGQGV----RLD 56 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + + A + + + + +Y N + Sbjct: 57 AVLQRNGPVGTGGTAYNAAQAVYDVTAGLPLEAASPSGTNLAREMVSMISTQHAYKANAT 116 Query: 120 EDILGKTVID 129 ++ Sbjct: 117 TVRTADAMLG 126 >gi|258404726|ref|YP_003197468.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796953|gb|ACV67890.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 243 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 10/127 (7%), Positives = 27/127 (21%), Gaps = 2/127 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + + + + N+ N DN + + + +N Sbjct: 1 MPIFSGLAAPLSGAALERTRLQVLSNNLANIDNAGFKQDRLLFETQLDNAQAGRTGEGTS 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + H S G Q + + + Sbjct: 61 RLQMTSTHTDFSQGGLQHTGRPLDLAIKGGGFFKVATDDGFAYTRHGSFVLQPDGALVTP 120 Query: 119 SEDILGK 125 + + + Sbjct: 121 TGEQVVG 127 >gi|167750706|ref|ZP_02422833.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702] gi|167656385|gb|EDS00515.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702] Length = 235 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 7/159 (4%) Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS-- 71 N + +I N+ N + Y + + E + +V+ R + F + S Sbjct: 1 MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60 Query: 72 ----SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKT 126 S+ + N + + E Y + Sbjct: 61 NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGRVLGQ 120 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165 + + + + + + L Sbjct: 121 NGEIYIGNDDFIVDNEGNILNENGEVIERLRLSYIPENA 159 >gi|167945456|ref|ZP_02532530.1| flagellar hook protein FlgE [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 175 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/158 (8%), Positives = 37/158 (23%), Gaps = 16/158 (10%) Query: 17 ASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSENKNMFDKV 66 A+ NI N+ + + + V + Sbjct: 1 ATTDLEVTGNNIANSSTTGFKESRAEFADIFASSISDASNATSGQGVRTTKVAQQFRQDS 60 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + ++ + + F +++ + Y + + L Sbjct: 61 IEFTANNLDLGINGEGFFTMEQ------PNGDRSYTRAGAFNVDRNGYVVDHTGSRLQIF 114 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 +A+ N T+ + + A ++L Sbjct: 115 PPVDADGTSFNTGTTVDLNLPVVSGAPGATSQVTASLN 152 >gi|297618421|ref|YP_003703580.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] gi|297146258|gb|ADI03015.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] Length = 256 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + Y V +E+ LI V ++Y + K++ D+ L + V Sbjct: 204 GQVIQGYLELSNVVAVKEMVELISVLRAYEANQKVVQAHDQTLDAAINRV 253 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 13/206 (6%), Positives = 43/206 (20%), Gaps = 26/206 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A + + I N+ NA + + + T Sbjct: 1 MIRGLYTACSGMLLQLAKQDVIANNLANASTPGFKKDLAVCTAFPDMMINRLGEVKVVAG 60 Query: 45 --------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 T ++ + + + + + F ++ Sbjct: 61 KEEPIPPVAIGRLGTGAAIQTISTDFSAGAVQKTDNPLDLAIAGDGFFVIQTPQGEKYTR 120 Query: 97 NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 N S + + + Y + + N + +R + Sbjct: 121 NGSFRIGDDGILTTAQGYPVLGRSGPINIGDQTFTIDEKGNLLVGDEVLDTLRVVRFENN 180 Query: 157 ELEISNLRRFLSELTVVNDAIKFKTA 182 + + + ++ Sbjct: 181 SELVKTGDDLFTNPSGTPVDVEDGQV 206 >gi|241204820|ref|YP_002975916.1| hypothetical protein Rleg_2100 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858710|gb|ACS56377.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 101 Score = 48.9 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56 MSL + + A + + + ++I NI N +Y R +T T Sbjct: 1 MSLSDIASTALSGMRAQATRVSAIANNIANTSTPDYARLNTSLTSVVSGGVQAVVS 56 Score = 36.9 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 T V+ EL+ LI+ EQSY + + M + L+ + Sbjct: 59 TSEVDQATELTDLIEAEQSYKANAVVFETGADMWEMLMSIKR 100 >gi|291287005|ref|YP_003503821.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290884165|gb|ADD67865.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 209 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 29/132 (21%), Gaps = 11/132 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 ++ N + + N+ N + + V++ + R Sbjct: 1 MMQGLYTGANAISVYKNSLINTANNVANINTPYFKSNTLQLNEMEQGGVSISSIRQNQDL 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + + L++ N + E + Sbjct: 61 ---SYTISSGRTLDFVIDGSGQFRLEDN-------NGTSYTRNGVFYLDAEGDVVDSGGR 110 Query: 122 ILGKTVIDNAEE 133 L + V+ E Sbjct: 111 KLLEDVVKPGES 122 Score = 42.3 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 19/48 (39%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + V+ E+ +I + +++ + + D ML ++ V Sbjct: 161 LRSGMLEVSDVDYAREVVDMIVTKNAFSANTSSVRTYDDMLGLIVNLV 208 >gi|218674651|ref|ZP_03524320.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 77 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 24/77 (31%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MS+ A + + + + +++ NI NA+ Y T + + S Sbjct: 1 MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60 Query: 61 NMFDKVLHAHSSAIGQQ 77 + + I Sbjct: 61 QTSVRQAISQQGDISYT 77 >gi|15639388|ref|NP_218837.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp. pallidum str. Nichols] gi|189025630|ref|YP_001933402.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp. pallidum SS14] gi|3322680|gb|AAC65385.1| flagellar basal-body rod protein (flgC) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018205|gb|ACD70823.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] Length = 129 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + Y V++ E+ LI ++Y + +I + +M Q LE + Sbjct: 75 DAILSGPKAGYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRALEIAR 129 >gi|220932527|ref|YP_002509435.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168] gi|219993837|gb|ACL70440.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168] Length = 145 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 11/32 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK 34 +L N + + + I NI N + Sbjct: 1 MLDSLNISASGLTAQRLRMDIIADNIANVNTT 32 Score = 40.8 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 15/39 (38%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E Y VN+ E+ +I ++Y + + M Sbjct: 97 EEGYVAMPNVNITTEMVDMISASRAYEANVTALNTAKNM 135 >gi|126463747|ref|YP_001044861.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17029] gi|126105411|gb|ABN78089.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 239 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ S+ NI N + R + T + + S + + Sbjct: 12 QSGLM---REMQSVANNIANISTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + F + E + + E + + L Sbjct: 68 QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + A + + L + +A Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S + +S I R + Y + L R + Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 >gi|330502732|ref|YP_004379601.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina NK-01] gi|328917018|gb|AEB57849.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina NK-01] Length = 147 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + S + +I NI NA+ + Y R + + Sbjct: 1 MSLASVFNIAGTGMSAQSTRLNTISSNIANAETVSSSLDQTYRARHPVFATVFQQAQGGD 60 Score = 40.4 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 22/36 (61%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +++ +MLQ +L Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTAKQMLQRVL 143 >gi|302387773|ref|YP_003823595.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198401|gb|ADL05972.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 267 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 28/132 (21%), Gaps = 25/132 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + F + ++ I N+ N Y ++T Sbjct: 1 MFHGFYNLASGMLYQNRNLNVISNNMVNVSTPGYKSDKLVSTTFKEEMLYRNGNRNKSNP 60 Query: 46 --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + R+ N + L + F +++ N Sbjct: 61 VEIGTVSMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDT------NGNRLYTR 114 Query: 104 ISKLRDSLESYS 115 R E Y Sbjct: 115 NGSFRLDDEGYL 126 Score = 44.6 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 72/216 (33%), Gaps = 9/216 (4%) Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321 N+ + V G + + R++ Q L+E L + ++ N L+ + Sbjct: 56 NKSNPVEIGTVSMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDTNGNRLYTRN 115 Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381 G LD++ +S V + + D +V K L G D Sbjct: 116 GSFRLDDEGYLCLSSMGRVLGEDGNPIELPSDHITVDKSGNIYEVPLKGLGTDE----DG 171 Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 + + G +Y + G + + + + I Sbjct: 172 GDSEDTEPTLLGKIGVADFADYTQLVKGDNGTFTTTAEATAANGGIQWKTI-----ERSN 226 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 ++ EE++ ++ +++ + +++ D+++ ++ Sbjct: 227 IDPIEEMTSMMSSQRASQSAAQVLKMYDQLMSRIVS 262 >gi|229918625|ref|YP_002887271.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b] gi|229470054|gb|ACQ71826.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b] Length = 142 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 19/74 (25%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISP--- 47 M + F+ + + + + ++ NI NA Y R+ T+ +P Sbjct: 1 MGMFDSFHISASALTSQRLRMDTVSANIANAQTTRGKLVDGEWQPYTRKMTVLQEAPFRK 60 Query: 48 ------ENVTVVTQ 55 V V Sbjct: 61 RLDAVNGGVQVSQI 74 >gi|229017032|ref|ZP_04173952.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1273] gi|229023213|ref|ZP_04179724.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1272] gi|228738138|gb|EEL88623.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1272] gi|228744303|gb|EEL94385.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1273] Length = 137 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSALTTARKWMEVTSNNIVNANTTGAPDAEPYHRRSVVLESN 50 >gi|78357998|ref|YP_389447.1| flagellar basal-body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220403|gb|ABB39752.1| flagellar basal-body rod protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 125 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMFDKVLH 68 N S + A NI NA + R+ + P + V V R ++ L Sbjct: 7 LQALNAFSMRQAVTADNIANASTDGFRSREVVLETGPQDQGVQVADIRRRQESQAMDELR 66 Query: 69 AHSSAIGQQ 77 + + Sbjct: 67 REQALNAET 75 >gi|27381995|ref|NP_773524.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum USDA 110] gi|27355165|dbj|BAC52149.1| flagellar basal body rod protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/200 (8%), Positives = 49/200 (24%), Gaps = 2/200 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + ++ +I N+ N + + + Sbjct: 1 MQSALYVGLSAQVALEKRLQTIANNVANVNTAAFRTDVVKFETVLS--KAGANPVAFSSP 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D ++ + I + + + A N + +L+ + + ++ Sbjct: 59 GDNIISRETGNITESGNPLDVAVVGQGWLAFAGPNGTVYTRDGRLQIAANGDLQTVAGFP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + S I D ++ + + N+ + N + Sbjct: 119 VIDAGGAQITLDPNGGPVSIARSGAITQDNNEIGTIGLFNIPTDANLERYGNSGVTPDRP 178 Query: 183 SKHDAHDFLDQRDVLLQKIS 202 + A D + S Sbjct: 179 ATAIADFSRDGFKQGYVEGS 198 >gi|221635450|ref|YP_002523326.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] gi|221157298|gb|ACM06416.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] Length = 248 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 27/67 (40%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + +S+ + V+L + L+ ++ +SY ++ + + D+ L Sbjct: 176 VAGNRYRTDATGAPSETTGVSQGFLEASNVDLTQTLTDMLAATRSYQLAARSLQLADETL 235 Query: 473 QTLLEGV 479 + + V Sbjct: 236 RLAVNSV 242 Score = 41.2 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 17/236 (7%), Positives = 55/236 (23%), Gaps = 16/236 (6%) Query: 3 LLAVFNKAQNICNNA-SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61 ++ +A ++Q ++ N+ N + Y +++ T R + Sbjct: 1 MIRTIYQAAAGMMAQFARQL-TLATNLANIETPGYRQQE------------STIRDFQQM 47 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 ++ +S IG ++ + ++ + + + Sbjct: 48 FLLRLGRGEASPIGTLSTAVRWDKPLVDLRQGSLIETGRPLDLALAGRAFFAIQTPDGVE 107 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + ++ + L VV + + Sbjct: 108 YTRDGRFQLDAQRRLVTADGHPVLGEQGPLVLPAGDIWVEPDGTILVGEQVVGRLLLVEF 167 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237 R + V + TL + + ++ Sbjct: 168 PPDAQFEPVAGNRYRTDATGAPSETTGVSQGFLEASNVDLT--QTLTDMLAATRSY 221 >gi|168335334|ref|ZP_02693430.1| Flagellar basal body and hook proteins [Epulopiscium sp. 'N.t. morphotype B'] Length = 256 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/250 (6%), Positives = 53/250 (21%), Gaps = 28/250 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A +++ I ++ N++ Y + + Sbjct: 1 MVRGLYTAATGMQVQTRRMDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPW 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + L + F + + N Sbjct: 61 RYKDLGTVMNGAKVADIYTDFRPGNLILTGISNNLAINGLGFFRV-------ETPNGERL 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + + A +V + + Sbjct: 114 TRDGSFTVNGDGVLVTAXGYPVLGENGQIALGRTFLNEGREMQVLPDGQVVLNTVTINTI 173 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 ++ +V +A A+ + + + S + ++ +V + Y Sbjct: 174 DIVNVDDPQLLVKEADNLFDATGLQLNPINSLIEQGYLESSNVNPVNAMVDMISVSRAYE 233 Query: 222 SDGTTLFETV 231 ++ + Sbjct: 234 ANQRMVQIHD 243 Score = 40.8 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 63/227 (27%), Gaps = 9/227 (3%) Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 +D + + K A+++ D V+ + ++E + + Sbjct: 19 MDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPWRYKDLGTVMNGAKVADIY 78 Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 + + N L V + L + Sbjct: 79 TDFRPGNLILTGISNNLAINGLGFFRVETPNGERLTRDGSFTVNGDGVLVTAXGYPVLGE 138 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR-----SDSHDLHMKSQVV 428 N + + V L N+I + + ++ +L + + Sbjct: 139 NGQIALGRTFLNEGREMQVLPDGQVVLNTVTINTIDIVNVDDPQLLVKEADNLFDATGLQ 198 Query: 429 FN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 N I + Y + VN + +I V ++Y + +++ D++ Sbjct: 199 LNPINSLIEQGYLESSNVNPVNAMVDMISVSRAYEANQRMVQIHDEL 245 >gi|291277450|ref|YP_003517222.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290964644|emb|CBG40498.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 164 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 M+ L+ F+ + + + I NI NA+ + Y R++ + Sbjct: 1 MAFLSSFDISGYGLSAQRFRTNIISSNIANANTTRTDEGGPYRRQEVVFKA 51 >gi|254466371|ref|ZP_05079782.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] gi|206687279|gb|EDZ47761.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] Length = 238 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 9/140 (6%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRS--ENKNMFD 64 Q+ ++ I NI N+ Y + + + SP +V R+ N +M Sbjct: 12 QSGLM---REMRVIANNIANSATTGYRQEGLIFSEFVQSSPGQPSVSMSRANIFNTSMEQ 68 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L F ++ + + + + +++ Y + Sbjct: 69 GQLTNTGGTFDFAIEGDGFFMIETPQGERLTRSGAFSPNAAGDLVTMDGYRVLDAGRAPV 128 Query: 125 KTVIDNAEEVVQNFNTSARE 144 D + V + + Sbjct: 129 FVPPDAGKIEVGADGSLSAN 148 >gi|86153269|ref|ZP_01071473.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612733|ref|YP_001000227.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] gi|167005182|ref|ZP_02270940.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] gi|85842995|gb|EAQ60206.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250029|gb|EAQ72987.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] Length = 164 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77 >gi|328545467|ref|YP_004305576.1| flagellar basal body rod protein [polymorphum gilvum SL003B-26A1] gi|326415208|gb|ADZ72271.1| Flagellar basal body rod protein [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 61/213 (28%), Gaps = 7/213 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60 + + A + + S + ++ RN+ N + Y + V+ + + Sbjct: 1 MQSALYVALSAQVSLSNRLETVARNVANMNTAGYRADEIKFAEVLSKAGADPVSFATAGE 60 Query: 61 NMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + L + + + A++ + + +L Y Sbjct: 61 RYISRQHGGLTRTDNPLDVAVEGDGWLAVRTGAGVVYTRDGRMKMDNDGVLRTLNGYDVL 120 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI--SNLRRFLSELTVVND 175 + + + V+ T + A I+ + + + Sbjct: 121 DAGGLPILLDREGGMPVIGRDGTVTQGEDVAGALGLFRIDERAKLTRFDNSGVIPDIPAE 180 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 I+ T+S +++++++I I+ Sbjct: 181 PIQEFTSSGMVQGYVEGANINPIRELTKLIMIT 213 >gi|291613036|ref|YP_003523193.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus ES-1] gi|291583148|gb|ADE10806.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus ES-1] Length = 134 Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +FN A + SQ+ + N+ N D+ Y + + + P V Sbjct: 1 MSLFNIFNIAGSAMTAQSQRLNVVASNLANVDSATGPDGKPYKAKQVVFSTVPITGQVGE 60 Query: 55 QRSENKNMFDKV 66 + D Sbjct: 61 GVKVAAVVEDNS 72 >gi|313903629|ref|ZP_07837019.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313466182|gb|EFR61706.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 41/216 (18%), Gaps = 16/216 (7%) Query: 6 VFNKAQNICNN---ASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53 A + ++ A + N + Y +T VV Sbjct: 27 GLYTAASGMLARVLQQERLA--GD-LANVNTPGYKASRNVTEAFPELLLSRLDGTGAPVV 83 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 + + Q + + Sbjct: 84 GPLGTGTVVAEPGADMRPGPWVTTGRPQDLALEGDGFFVVMGPGGPAYTRAGNFTVGSQG 143 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173 Y + + T V T + Q + DA ++ Sbjct: 144 YLQAPDGSPVLDTTGQPL-LVGSAQFTVRPDGQVVVGDAVLGTIARVTFANPAGLRRVGD 202 Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 N + ++ VL Q + + + Sbjct: 203 NLWQATAESGPAVPAATPVRQGVLEQSNVDPVQVVV 238 >gi|146307871|ref|YP_001188336.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina ymp] gi|145576072|gb|ABP85604.1| flagellar basal-body rod protein FlgC [Pseudomonas mendocina ymp] Length = 147 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + S + +I NI NA+ + Y R + + Sbjct: 1 MSLASVFNIAGTGMSAQSTRLNTISSNIANAETVSSSIDQTYRARHPVFATVFQQAQGGD 60 Score = 40.4 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 22/36 (61%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +++ +MLQ +L Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTAKQMLQRVL 143 >gi|326319501|ref|YP_004237173.1| flagellar basal body rod protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376337|gb|ADX48606.1| flagellar basal body rod protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 100 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 3/84 (3%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMF-DKVLHA 69 A Q + N+ N + + + R+ + P V R+ + + Sbjct: 11 GLRAAQLQLDTSAHNVANMNTEGFRRQTVEQSAVPDQGGVEARVGRAAQEGASPEADAVD 70 Query: 70 HSSAIGQQRLLQSFEALKEMMSAD 93 SA ++ M Sbjct: 71 QMSATYAFSANLQTLKTEDRMLGS 94 >gi|163733142|ref|ZP_02140586.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] gi|161393677|gb|EDQ18002.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] Length = 237 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 9/117 (7%), Positives = 29/117 (24%), Gaps = 4/117 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ +++ + NI NA + + + + ++V + S + + Sbjct: 12 QSGL---AKEMRVVANNIANAATSGFRQEGVIFSEYVKSVDGASSLSMGQA-DARNTSFA 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 + Q F + + + + + Sbjct: 68 QGGLTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDGYRVLDAG 124 >gi|254462007|ref|ZP_05075423.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium HTCC2083] gi|206678596|gb|EDZ43083.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium HTCC2083] Length = 237 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 10/128 (7%), Positives = 31/128 (24%), Gaps = 16/128 (12%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQRSENKNMFD 64 Q+ ++ + I NI NA+ Y + + + + +++ T R+ ++ Sbjct: 12 QSGLM---REMSVIASNIANANTTGYRQEGLIFSEVIKGESDAPSLSMATARARATSLAP 68 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + F + + + + + Sbjct: 69 GTITQTGGPYDVAIDGDGFFQI-------QTPGGTRLSRAGHFMPNNQGDLVTPDGYRVL 121 Query: 125 KTVIDNAE 132 Sbjct: 122 DAGGAPLG 129 >gi|240144761|ref|ZP_04743362.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203282|gb|EEV01567.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534609|emb|CBL07721.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] gi|291540626|emb|CBL13737.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 264 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 24/252 (9%), Positives = 67/252 (26%), Gaps = 11/252 (4%) Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288 + + ++ N Y +N F D + + S+ + + + + Sbjct: 20 DILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYGMPQKLGTMSM-GVHIGETYT 78 Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348 + + + ++ + A ++ + T + Sbjct: 79 DYSQGNFRVTDNATDFALDGDGFFAIAYTDKAGNTSVKYSRDGAFVVNTAGYLVTKDGDY 138 Query: 349 SFLRDGGSVSKKFL-WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407 ++G + V N+ V I L +Y N Sbjct: 139 VLNQNGAMNADAGARIQVDPNVPITVDEKGNIFQNNQQVGTIGVVDIADYNYLAKYGENM 198 Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467 + + + + + +N+ E+ +I + +++ K+I Sbjct: 199 YDLVNGGARQASTAKVTQGCI---------ESSNINVVSEMVNMITISRAFQAGQKVINA 249 Query: 468 TDKMLQTLLEGV 479 D+ L + V Sbjct: 250 VDETLDKAVNQV 261 Score = 40.8 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 15/179 (8%), Positives = 35/179 (19%), Gaps = 23/179 (12%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45 A N + + N+ NAD Y + Sbjct: 4 GLYTAYTGMINEQNRLDILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYGMPQK 63 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 V + +A F A+ + + Sbjct: 64 LGTMSMGVHIGETYTDYSQGNFRVTDNATDFALDGDGFFAI--AYTDKAGNTSVKYSRDG 121 Query: 106 KLRDSLESYSKN-LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + Y + +L + NA+ + + + ++ + Sbjct: 122 AFVVNTAGYLVTKDGDYVLNQNGAMNADAGARIQVDPNVPITVDEKGNIFQNNQQVGTI 180 >gi|153951079|ref|YP_001398445.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. doylei 269.97] gi|152938525|gb|ABS43266.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. doylei 269.97] Length = 164 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + + I NI N + + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMSVISSNIANVNTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ +++ + + L Sbjct: 53 ---DFDKLLNEQINKNNNFLKYENPLND 77 >gi|32266589|ref|NP_860621.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262640|gb|AAP77687.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 277 Score = 48.5 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/225 (6%), Positives = 51/225 (22%), Gaps = 20/225 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVVTQ 55 + + + + I N+ N + + R D + E + + Sbjct: 1 MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60 Query: 56 RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + ++ + + S L + + Sbjct: 61 TRKAAKFLNRTMDRVPIISEEYTDRSIGSLAQTDNTLDFALQHQNAFFVVKTPDGIRYTR 120 Query: 104 ISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 + + + +L + ++ E + I+ Sbjct: 121 DGNFHIDADGHIVSKEGHLVLSRDGLEEGEGISVPTGMHLESDNSGNLYLRNINNDAIAE 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + V + ++ + +++ ++R + I Sbjct: 181 QINIGALAVVGFENPRYLKKVGKNFYEYPEERLEERDILQNNGII 225 >gi|229544391|ref|ZP_04433449.1| flagellar basal-body rod protein FlgC [Bacillus coagulans 36D1] gi|229324876|gb|EEN90553.1| flagellar basal-body rod protein FlgC [Bacillus coagulans 36D1] Length = 149 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 10/58 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPE 48 MS+ N + + + I NI NAD Y R++ + Sbjct: 1 MSMFTGMNISSEALSAQRLRMDVISSNIANADTTRDTYVNGKWQPYRRKEVVLAAGGG 58 >gi|330830302|ref|YP_004393254.1| flagellar basal-body rod protein FlgF [Aeromonas veronii B565] gi|328805438|gb|AEB50637.1| Flagellar basal-body rod protein FlgF [Aeromonas veronii B565] Length = 248 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/134 (7%), Positives = 31/134 (23%), Gaps = 12/134 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + A N+ NA+ + R + Sbjct: 1 MDHLLYIAMSGAKETMNSLAVRGNNLANANTTGFKSDFEQARSMQAFGEGLPSRVFAMAE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +N+ +L + + A+++ + L+ + + Sbjct: 61 RPGQNLQHGMLMTTGRDLDVAVDGPGWIAVQD------PKGGEAYTRMGNLQVNATGNLQ 114 Query: 117 NLSEDILGKTVIDN 130 + + Sbjct: 115 TSTGLNVVDDGGQP 128 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + + + VN+ +E++ LI++++ + K++ ++ Sbjct: 188 QNEPASANVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236 >gi|126175148|ref|YP_001051297.1| flagellar basal body rod protein FlgC [Shewanella baltica OS155] gi|125998353|gb|ABN62428.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS155] Length = 138 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL ++F+ A + + S + + NI NAD Sbjct: 1 MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32 Score = 40.8 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|600722|gb|AAA92801.1| flagellar hook FlgE [Helicobacter mustelae] Length = 403 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 27/357 (7%), Positives = 79/357 (22%), Gaps = 21/357 (5%) Query: 26 RNIENADNKNYVRRDTMTTIS--------------PENVTVVTQRSENKNMFDKVLHAHS 71 NI N + + N+ Sbjct: 1 NNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLGVNVNSTTKVFSQ 60 Query: 72 SAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + + + ++ + D Sbjct: 61 GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVTNGGYVVQGWMKD 120 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 + + R D K I+ + + N +++ + Sbjct: 121 DLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMMMPARASSNISLRANLNAGRHVDQ 175 Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249 + + + + GI+ I +++++ D LF I + V+ ++ Sbjct: 176 VANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGALFTQSGDAIGLTENQGIWVSYKT 235 Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 + + D S + +I S + + + + + E G Sbjct: 236 SEMVNDIEATSGESSIEINHTRISFTNDSAASGISSVVAAQNAINALKQKTGVEAFVDNG 295 Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 + + + ++ + + S+ + R + S Sbjct: 296 MLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDSDITAFRYRYTTSASPDSGTG 352 >gi|32266907|ref|NP_860939.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus ATCC 51449] gi|32262959|gb|AAP78005.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43 L+ F+ + + + +I NI NA+ + Y RR+ + Sbjct: 3 LSSFDISGYGLSAQRVRINTISSNIANANTTRTDEGGPYRRREVIF 48 >gi|317050614|ref|YP_004111730.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316945698|gb|ADU65174.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 259 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 29/66 (43%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + + + Y + VN+ E++ ++++ +S++ K+I D+ + Sbjct: 190 NQLARVSADVEAYPAEHFELHQGYLESSNVNIVREMTDMVELNRSFSAYQKMISSIDETV 249 Query: 473 QTLLEG 478 TLL+ Sbjct: 250 STLLQA 255 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 11/132 (8%), Positives = 33/132 (25%), Gaps = 22/132 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------------------RDTM 42 ++ + + S++ + N+ N + + + R T+ Sbjct: 1 MVNGLYTSASGMVLQSRKLDASANNLANVNTVGFKKDIISVDNFRAKSTTREEDAWRRTL 60 Query: 43 TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 + N + + LH +++ +F + + Sbjct: 61 FNETINNTH--NIAKIHVDHSQGALHQTGNSLDVGINGNAFLVVDTPFGERYTRGGNLQI 118 Query: 103 YISKLRDSLESY 114 + E Y Sbjct: 119 DSEGRLTTKEGY 130 >gi|315497882|ref|YP_004086686.1| flagellar basal-body rod protein flgf [Asticcacaulis excentricus CB 48] gi|315415894|gb|ADU12535.1| flagellar basal-body rod protein FlgF [Asticcacaulis excentricus CB 48] Length = 249 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/200 (7%), Positives = 43/200 (21%), Gaps = 7/200 (3%) Query: 18 SQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76 ++ N+ N + Y + + R+ +DK + S Sbjct: 16 RRELDVTANNLANMNTNGYKFEQLLVEPEEGRPAYNLPIRAPANFAYDKGVGRDFSQGAL 75 Query: 77 QRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133 ++ E + N S + + + Sbjct: 76 TTTGGDYDVGIEGEGAFFVINGANGPLYTRDGAFTVSPQGVLVTGDGLPVQGDGGEIRLN 135 Query: 134 VVQNFNTSAREVQKIRADADKEI---ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + + + + D + + + ++ + T D Sbjct: 136 PEFGAPSISADGVVSQRSTDGIVRVGRISVVRFASLSDLEKQGDNRFRATTNVAPDPAPD 195 Query: 191 LDQRDVLLQKISEIIGISTI 210 R +++ + Sbjct: 196 ARLRQGMIETSNVNALSEVT 215 >gi|113969604|ref|YP_733397.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-4] gi|114046836|ref|YP_737386.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-7] gi|113884288|gb|ABI38340.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-4] gi|113888278|gb|ABI42329.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-7] Length = 138 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL ++F+ A + + S + + NI NAD Sbjct: 1 MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32 Score = 40.8 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|90423029|ref|YP_531399.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris BisB18] gi|90105043|gb|ABD87080.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris BisB18] Length = 141 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46 M A + + + I NI N A Y R+ T + Sbjct: 6 MDFSRSMGIATSGLRAQAARMRVISENIANAESTAQTPGGDPYRRKVPTFTSA 58 >gi|309388845|gb|ADO76725.1| flagellar basal-body rod protein FlgF [Halanaerobium praevalens DSM 2228] Length = 250 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 7/171 (4%) Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373 D S + + S + + L Sbjct: 75 KDMSQGDFKRTDNALDFAIEGSGFFVIETENGEKYSRDGNFTINADSELITQSGNNVLDS 134 Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRSDSHDLHMKSQVV 428 N +++F I N L + L + + ++L +++ + Sbjct: 135 NGNRIQIIPDQDFRVSAEGQITFNNGLQGAQIGLVDFENEAELAQTGDNLYELQGETEPI 194 Query: 429 FNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I++ Y V + EE++ +IK + Y + K+I D+ L ++ Sbjct: 195 ASQAGIAQGYVEGSNVQIVEEMAKMIKTTRHYESNQKVISSIDESLNKVIN 245 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/166 (8%), Positives = 39/166 (23%), Gaps = 24/166 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + ++ N+ N + + + + +T Sbjct: 1 MIRGLYTAASSMGVLEKKTNIRSNNLANVNTNGFKKSEAITASFPEMLLSKIEADKADQQ 60 Query: 46 SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105 T K+M +A+ F + N Sbjct: 61 IGSLATGAYLERSFKDMSQGDFKRTDNALDFAIEGSGF-------FVIETENGEKYSRDG 113 Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151 + +S S + + + + + + + E Q + Sbjct: 114 NFTINADSELITQSGNNVLDSNGNRIQIIPDQDFRVSAEGQITFNN 159 >gi|20807892|ref|NP_623063.1| flagellar basal body protein [Thermoanaerobacter tengcongensis MB4] gi|20516457|gb|AAM24667.1| Flagellar basal body protein [Thermoanaerobacter tengcongensis MB4] Length = 131 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 12/33 (36%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 A+ + I NI N D N+ R + Sbjct: 11 GLYAATVRSNVIANNIANVDTPNFKRSEVKFEE 43 >gi|229542505|ref|ZP_04431565.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] gi|229326925|gb|EEN92600.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] Length = 276 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%) Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 V NP ++ + + L Y D ++F V + Sbjct: 132 NNRSVLTDANGNPVLDEHNAMITFRGNVADYAIRPNGTLQVAYSDGTRESFNL-GVVQMR 190 Query: 396 TNVTLLEYARNSIGW-LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L + N + N ++ + + + + V+L E++ L K Sbjct: 191 NPQVLEQVGNNLLRLPQNVNAANVYTDLTGATRSQISMQQGVLEKSNVDLSTEITELTKT 250 Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480 E+ Y +K I +D+M+ L+ ++ Sbjct: 251 ERLYQFQSKTITLSDQMMG-LVNNIR 275 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 13/44 (29%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + A N + +I N+ N D Y + T Sbjct: 1 MNQSMLTATNTLRQLQDKIDTISHNVANVDTNGYKSKQASFTDL 44 >gi|218674738|ref|ZP_03524407.1| flagellar hook-associated protein FlgK [Rhizobium etli GR56] Length = 68 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 33/67 (49%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL + N AQ+I NN Q + + NI NA NK+YVRR M T S VV + Sbjct: 1 MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVQINRAQE 60 Query: 61 NMFDKVL 67 + + Sbjct: 61 DALLRQY 67 >gi|153001474|ref|YP_001367155.1| flagellar basal body rod protein FlgC [Shewanella baltica OS185] gi|160876205|ref|YP_001555521.1| flagellar basal body rod protein FlgC [Shewanella baltica OS195] gi|151366092|gb|ABS09092.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS185] gi|160861727|gb|ABX50261.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS195] gi|315268395|gb|ADT95248.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS678] Length = 138 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL ++F+ A + + S + + NI NAD Sbjct: 1 MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32 Score = 40.8 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|163782129|ref|ZP_02177128.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159882661|gb|EDP76166.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 242 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 27/147 (18%), Gaps = 23/147 (15%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------------ 54 + ++ A N+ N D ++ R + ++ Sbjct: 8 LFILSSGMLLQERKLAVTTNNLANLDTPSFKRDFVEVSSWYTDMGAQVPNLSPENPTNNF 67 Query: 55 ----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 ++ L + E A R Sbjct: 68 VYPMMTRIFTDLSQGSLRETGNTFDLAIEG-------EGFFAVRTPEGVMYTRKGNFRLD 120 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQN 137 E + + D + V Sbjct: 121 SEGFLVTEKGYRVLDRANDEVKVVGNR 147 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%) Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + + + VN E+ LI+ +++ +LI D++ + V+ Sbjct: 183 TGTPQPAEGFSVRQGFIELSNVNGIVEMVRLIETSRAHETYARLIQAVDEVQNRVNTIVR 242 >gi|302670716|ref|YP_003830676.1| flagellar basal-body rod protein FlgC [Butyrivibrio proteoclasticus B316] gi|302395189|gb|ADL34094.1| flagellar basal-body rod protein FlgC [Butyrivibrio proteoclasticus B316] Length = 149 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 9/151 (5%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTISPENVTVV 53 M++ FN + + I NI NA+ Y R+ Sbjct: 1 MNIFDSFNINSSGMTAQRFRMDIISENIANANTTRTKDGDTPYTRKVVRFAEKGTQTPFS 60 Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 R N+ + Q + + + D N T+ + + Sbjct: 61 --RILNERLDHYSGRGVKVTQVQDDTWTQYNIVYDPSHPDADANGYVTYPNVNTVTEMTN 118 Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 T D ++ + + Sbjct: 119 LIDASRSYEANATAFDASKNIAARGLELGQG 149 >gi|298529927|ref|ZP_07017329.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509301|gb|EFI33205.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 261 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 34/161 (21%), Gaps = 6/161 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + + +I N+ N + Y R N + Sbjct: 1 MQDEMYSAFFGAMSQEAKMNTITNNLANVNTTGYKRDKIAFEDVFT-RYASDYGDPNMTL 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 D++ S Q R L++ + + Sbjct: 60 EDRLPWPESKLRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFE-----VTTPEGET 114 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + + + EI + SN+ Sbjct: 115 AYTRNGSFLRNPETGHLVTGQNFELQGEGGPIEIPEDASNI 155 Score = 43.5 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 53/194 (27%), Gaps = 6/194 (3%) Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 ++Q L + + + + + + + NP+ Sbjct: 70 LRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFEVTTPEGETAYTRNGSFLRNPETG 129 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + ++ + N + + L + R Sbjct: 130 HLVTGQNFELQGEGGPIEIPEDASNIAIGENGEVLADGDLLDVINLTTFTDLNALEKKGR 189 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + ++ + ++ I + Y V+ E+ +I +++ K++ Sbjct: 190 QLV-QVKDGADSAPIPAEDAR-----IEQGYLENSNVDPVYEMVNMISTMRNFEALQKMM 243 Query: 466 MFTDKMLQTLLEGV 479 + + Q L++ V Sbjct: 244 TSSHEKDQQLIQQV 257 >gi|255018232|ref|ZP_05290358.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL F2-515] Length = 62 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 S + ++ES S+ GVN+ EE++ +++ + Y + K + + M++ LL Sbjct: 1 SSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLA 60 Query: 478 GV 479 + Sbjct: 61 ML 62 >gi|163744348|ref|ZP_02151708.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] gi|161381166|gb|EDQ05575.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] Length = 247 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/211 (9%), Positives = 45/211 (21%), Gaps = 14/211 (6%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL +Q NI NA Y + +N T + Sbjct: 9 MSLATSL----------QRQLDITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAF 58 Query: 61 NMFDKVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 + L + S + + L Sbjct: 59 VSDTGSYIDTRPGALSQTGNPLDVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLL 118 Query: 119 SEDILGKTVIDNAEEVVQ--NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176 S + + + + + ++ + + ++ S + Sbjct: 119 SGAKVLDAGGAPIQLPTEGLGDINISEDGTISGSETGPLGRIGVFDVPEIQSYKRLGAGM 178 Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + A Q ++S + + Sbjct: 179 LVAPEGAAKPAVAESVQVRQGTLELSNVNPV 209 Score = 38.9 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 55/208 (26%), Gaps = 5/208 (2%) Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311 I + + +S G +ALLQ ++ + + + Sbjct: 21 ITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAFVSDTGSYIDTRPGALSQTGNPL 80 Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371 + + D + G + ++ Q + G Sbjct: 81 DVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLLSGAKVLDAGGAPIQLPTEGLGD 140 Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431 ++ S ++ + + ++ + + + + V Sbjct: 141 INISEDGTISGSETGPLGRIGVFDVPE--IQSYKRLGAGMLVAPEGAAKPAVAESV---Q 195 Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYN 459 + + VN E++ LI V+++Y Sbjct: 196 VRQGTLELSNVNPVREMTRLIDVQRAYE 223 >gi|146278638|ref|YP_001168797.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17025] gi|145556879|gb|ABP71492.1| Flagellar hook protein FlgE-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 239 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/198 (9%), Positives = 45/198 (22%), Gaps = 4/198 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ SI NI N + R + T + + S + + Sbjct: 12 QSGLM---REMQSIANNIANLSTTGFRREGVVFTEHVKRLDGEASLSMASA-SARHVDLS 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + F + + + E ++ + L Sbjct: 68 QGGLTHTGATFDFAIMGDGFFLIETPQGEHLTRAGSFTPDAEGELVDMDGNRLLDEGGAP 127 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + + + + + L + + A Sbjct: 128 VFIPPDARDVVLASDGTLSSGGQPIGRIGLWQPTEPLDLRHEGGTRFSAEAGVEPAAGAS 187 Query: 191 LDQRDVLLQKISEIIGIS 208 L Q + ++ I IS Sbjct: 188 LIQGSLEESNVAPISEIS 205 >gi|222824065|ref|YP_002575639.1| flagellar proximal rod protein FlgC [Campylobacter lari RM2100] gi|222539287|gb|ACM64388.1| flagellar proximal rod protein FlgC [Campylobacter lari RM2100] Length = 164 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 17/95 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89 + + +K + ++ + + L + K+ Sbjct: 53 ---DFNELLNKQITKDNNFLEYENPLNDPASQKDA 84 >gi|217972596|ref|YP_002357347.1| flagellar basal body rod protein FlgC [Shewanella baltica OS223] gi|304409980|ref|ZP_07391599.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|307302307|ref|ZP_07582065.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] gi|217497731|gb|ACK45924.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS223] gi|304351389|gb|EFM15788.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|306914345|gb|EFN44766.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] Length = 138 Score = 48.1 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL ++F+ A + + S + + NI NAD Sbjct: 1 MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32 Score = 40.8 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|46205476|ref|ZP_00048498.2| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 48.1 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 7/152 (4%), Positives = 28/152 (18%), Gaps = 2/152 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A + ++ + N+ N + + + + + Sbjct: 1 MQNSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLAKSSRGDV--AFVDA 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L + + + + +L + + Sbjct: 59 GKTALSRVAGPTTKTDSALDVAVQGDAWLGVKGPKGTLYTRDGRLTMDANGQLRTVGGLP 118 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + Q I ++ Sbjct: 119 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQ 150 >gi|327441057|dbj|BAK17422.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 154 Score = 48.1 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 11/34 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ N + + I NI N D Sbjct: 1 MSIFHSMNTTASALTTQRLRMDVISSNIANVDTT 34 >gi|218528725|ref|YP_002419541.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] gi|218521028|gb|ACK81613.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 242 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 9/161 (5%), Positives = 33/161 (20%), Gaps = 1/161 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + ++ + N+ N + + + + Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRGEV-AFVGPG 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A L + ++ +L + + Sbjct: 60 KTTISRAAGPTTKTDSTLDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + Q I ++ L + ++ Sbjct: 120 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSI 160 >gi|157165285|ref|YP_001467064.1| flagellar basal body rod protein FlgC [Campylobacter concisus 13826] gi|112800440|gb|EAT97784.1| flagellar basal-body rod protein FlgC [Campylobacter concisus 13826] Length = 166 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 MS L F+ + + + I NI NA + Y R++ + Sbjct: 1 MSYLNDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRQEVIFKEM-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + L S + + L Sbjct: 53 ---NFDKILNDQLKNSQSLLDYENPLDD 77 >gi|121607563|ref|YP_995370.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae EF01-2] gi|121552203|gb|ABM56352.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae EF01-2] Length = 134 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MS+L++FN + + + +Q+ + N+ N D Y R + +P Sbjct: 1 MSMLSIFNLSGSAISAQAQRLNVVASNLANVDAVAGPDGQPYKARQVVFQTAPMGAPSAA 60 Query: 55 QRSE 58 Sbjct: 61 GVRV 64 >gi|149174025|ref|ZP_01852653.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] gi|148847005|gb|EDL61340.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] Length = 542 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 10/100 (10%), Positives = 18/100 (18%), Gaps = 11/100 (11%) Query: 22 ASIVRNIENADNKNYVRRDTMTTISPENVTVV-----------TQRSENKNMFDKVLHAH 70 IV NI NA + R P + + Sbjct: 280 DVIVNNIANAGTIGFKRLYVEFESLPYEYVKTPASEEAETEPPIAVGMGSQVLQTRISQT 339 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110 S + + + + +L Sbjct: 340 SGELLKTGRELDIAIEGQGFLQVRLGETTAFTRTGRLIFD 379 >gi|170742326|ref|YP_001770981.1| flagellar basal body rod protein FlgF [Methylobacterium sp. 4-46] gi|168196600|gb|ACA18547.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] Length = 248 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/206 (5%), Positives = 39/206 (18%), Gaps = 6/206 (2%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68 + ++ I N+ N + R T V+ Sbjct: 7 IGLSAQMALGRELEVIANNMANVSTTGFKGRTTHFQEYLMPKARAETFRMPDRRLSYVID 66 Query: 69 A------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I + + A + + ++ Sbjct: 67 AGTPLDLAQGPIESTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLVTSDGNL 126 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + + ++ ++ N Sbjct: 127 VLGEGGPIQINPQETGLAIGADGTVSTSQGNRGRIRLVAFADPRQLTNAGANLYAASAPP 186 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208 ++ + +S ++ ++ Sbjct: 187 RPAGPLARIEPGALERSNVSPVLTMT 212 >gi|330839540|ref|YP_004414120.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] gi|329747304|gb|AEC00661.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] Length = 137 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 15/43 (34%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + Q A+ + I NI N + N+ + + + Sbjct: 8 NRALDVMQRGMGAANLRQEVISHNIANVNTPNFKKSNVVFEDL 50 >gi|163850121|ref|YP_001638164.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240137255|ref|YP_002961724.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254559266|ref|YP_003066361.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|163661726|gb|ABY29093.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240007221|gb|ACS38447.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254266544|emb|CAX22308.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 242 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 9/161 (5%), Positives = 33/161 (20%), Gaps = 1/161 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + ++ + N+ N + + + + Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRGEV-AFVGPG 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A L + ++ +L + + Sbjct: 60 KTTISRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 + Q I ++ L + ++ Sbjct: 120 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSI 160 >gi|284989558|ref|YP_003408112.1| hypothetical protein Gobs_0980 [Geodermatophilus obscurus DSM 43160] gi|284062803|gb|ADB73741.1| protein of unknown function DUF1078 domain protein [Geodermatophilus obscurus DSM 43160] Length = 134 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 10/130 (7%), Positives = 26/130 (20%), Gaps = 6/130 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS + + + ++ NI N +N + R + Sbjct: 1 MSTFDSLGISGSGLLVHRKWLDAVSDNIANINNVTSTDQDAFQERLIVAQAVDYGSGEGG 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 R + ++ D + ++ Sbjct: 61 VRVARAEYGSAEGRMVHEPDHPLADANGYVRYPDIDLGDQMTQLIMAQRGYQANLAVVER 120 Query: 115 SKNLSEDILG 124 + + L Sbjct: 121 ATTAYQAALQ 130 >gi|307945654|ref|ZP_07660990.1| flagellar basal-body rod protein FlgC [Roseibium sp. TrichSKD4] gi|307771527|gb|EFO30752.1| flagellar basal-body rod protein FlgC [Roseibium sp. TrichSKD4] Length = 136 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 7/52 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45 M L+ A + + + I NI NA+ + Y RR Sbjct: 1 MDLIKSLFVAASGLKAQNGRMRVIAENIANANSTAKTPDGEPYRRRVPTFQS 52 Score = 38.9 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 22/40 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN E + + + ++SY + +I + +MLQ ++ +K Sbjct: 96 NVNTLIETADMREAQRSYEANLNVIQSSRRMLQRTIDILK 135 >gi|255321464|ref|ZP_05362622.1| flagellar basal-body rod protein FlgC [Campylobacter showae RM3277] gi|255301320|gb|EET80579.1| flagellar basal-body rod protein FlgC [Campylobacter showae RM3277] Length = 165 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%) Query: 1 MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46 MS + F+ + + + I NI NA+ + Y RR+ + Sbjct: 1 MSNYLSDFDISGYGLSAQRFRMNVISSNIANANTVRTAEGGPYRRREVIFKAV 53 >gi|86151838|ref|ZP_01070052.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 260.94] gi|148925898|ref|ZP_01809585.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414808|ref|YP_001482064.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81116] gi|205355383|ref|ZP_03222154.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283954185|ref|ZP_06371710.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 414] gi|283955949|ref|ZP_06373439.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 1336] gi|315124050|ref|YP_004066054.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841467|gb|EAQ58715.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 260.94] gi|145844884|gb|EDK21988.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385772|gb|ABV52087.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346617|gb|EDZ33249.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792609|gb|EFC31388.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 1336] gi|283794464|gb|EFC33208.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 414] gi|284925790|gb|ADC28142.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni IA3902] gi|315017772|gb|ADT65865.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931721|gb|EFV10676.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 327] Length = 164 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77 >gi|168698712|ref|ZP_02730989.1| Flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246] Length = 144 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTV 52 L A + + + I NI NA+ Y R+D + Sbjct: 6 LFAGSAISGTGMSAERLRMEVIANNIANANTTRSANGGPYRRQDVVFEELLGAAAG 61 >gi|71281915|ref|YP_268223.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] gi|71147655|gb|AAZ28128.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] Length = 247 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 17/222 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + Q + N+ NA + R + Sbjct: 1 MDKLLYIAMSGAKQNMQALSINANNLANAKTTGFKADLAQARSMQAFGEGLPSRVFSMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 ++N + ++ + F A++ R + + Sbjct: 61 RASQNFDSGSILHTGRSLDMAIEGEGFFAVQ------AEDGQEAYTRGGHFRLTETGALE 114 Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-----ISNLRRFLSELT 171 +++ + N +R+ + A ++ I + + Sbjct: 115 TNDGELVIGENGPITLPLPINNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPDTRLVD 174 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213 ND + D + S + I+ + Sbjct: 175 KGNDGLFRAKNGGQLIADVNVNVLGGALESSNVNPINEMTDM 216 Score = 38.1 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 21/238 (8%), Positives = 71/238 (29%), Gaps = 4/238 (1%) Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293 + + M+ ++ I + + + G + +++ + + + + Sbjct: 3 KLLYIAMSGAKQNMQALSINANNLANAKTTGFKADLAQARSMQAFGEGLPSRVFSMTERA 62 Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353 ++ + + F A +D +G + +N L Sbjct: 63 SQNFDSGSILHTGRSLDMAIEGEGFFAVQAEDGQEAYTRGGHFRLTETGALETNDGELVI 122 Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 G + + N+ D + + + + V I L + Sbjct: 123 GENGPITLPLPINNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPDTRLVDKGNDGLFR 182 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 ++ + + V + VN E++ +I +++ + + K++ +++ Sbjct: 183 AKNGGQLIADVNVNVLG----GALESSNVNPINEMTDMIALQRQFEMQLKMMKTAEEI 236 >gi|327480018|gb|AEA83328.1| flagellar basal body rod protein FlgC [Pseudomonas stutzeri DSM 4166] Length = 147 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MSL +VFN A + + S + +I NI NA+ Sbjct: 1 MSLSSVFNIAGSGMSAQSTRLNTISSNIANAETV 34 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ MLQ +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKTMLQKVL 143 >gi|77464905|ref|YP_354409.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides 2.4.1] gi|77389323|gb|ABA80508.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 239 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 48/230 (20%), Gaps = 7/230 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ S+ NI N + R + T + + S + + Sbjct: 12 QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + F + E + + E + + L Sbjct: 68 QGGLTHTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + A + + L + +A Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S + +S I R Y + L R + Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIEVQRAYEMGQSFLDREDDRIRTTVRT 234 >gi|332559803|ref|ZP_08414125.1| FlgF2 [Rhodobacter sphaeroides WS8N] gi|332277515|gb|EGJ22830.1| FlgF2 [Rhodobacter sphaeroides WS8N] Length = 239 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ S+ NI N + R + T + + S + + Sbjct: 12 QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + F + E + + E + + L Sbjct: 68 QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + A + + L + +A Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S + +S I R + Y + L R + Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 >gi|307747446|gb|ADN90716.1| Flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni M1] Length = 164 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77 >gi|120613057|ref|YP_972735.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli AAC00-1] gi|120591521|gb|ABM34961.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli AAC00-1] Length = 134 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++F + + + +Q+ + N+ N D Y R + +P Sbjct: 1 MSMFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGGEGAA 60 Query: 55 QRSEN 59 + Sbjct: 61 GVRVS 65 Score = 36.5 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413 S+ + A +++ + + D A V G Sbjct: 3 MFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGGEGAAGV 62 Query: 414 NRSDSHDLHMKSQVVFNHISESYSNT-----VGVNLQEELSFLIKVEQSYNISNKLIMFT 468 S + + V + VN EE+ +I +SY + +++ T Sbjct: 63 RVSAISESQAPGKRVLDPTHPQADAEGYVTHSNVNPVEEMVNMISASRSYQNNVEVLNTT 122 Query: 469 DKMLQTLLEG 478 +L L+ Sbjct: 123 KSLLLKTLQM 132 >gi|323490138|ref|ZP_08095358.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] gi|323396186|gb|EGA89012.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] Length = 278 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/230 (8%), Positives = 48/230 (20%), Gaps = 30/230 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + A + ++Q + N+ NA+ + T+ Sbjct: 1 MFRGLYTATSGMMANNRQQQILTNNLSNANTPGFKEDQTVFRAFPEQLIKAVENSKKGTI 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ------RLLQSFEALKEMMSADDH 95 T V + + L + + M+ A Sbjct: 61 VPHNIGTLTTGVYTQEGIPSFLQGPLKETGNQTDIALLDELLPTNPDTQQKGSMVFAVAA 120 Query: 96 YNNSP-THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 + + + + + + +F + A Sbjct: 121 EDGEVRYTKNGSFAVDTQGFLTTSDGFSVLGEDLQPIQVGSADFTVQDNGEILLANGAQG 180 Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204 + N + + + F+D D+L S + Sbjct: 181 DRLWVGYTENPQQFVKEGQN--LLRWAGAPEASPQFIDNFDLLDGTPSFM 228 >gi|91204384|emb|CAJ70884.1| strongly similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 250 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 8/128 (6%), Positives = 25/128 (19%), Gaps = 3/128 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---N 59 +++ + A I RN+ N + Y + + + + Sbjct: 9 MISGLYTGATNMMGQGEYQAVIARNLANVNTVGYKKNIAVFESFVAGAKNQAKEASEGTG 68 Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 ++ + + + S + Sbjct: 69 SSLGKVATDFSPGVMQFTGNELDLAIKGDGFFEVQTKAGIAYTRSGQFMLSRDRTVVTPE 128 Query: 120 EDILGKTV 127 L + Sbjct: 129 GWPLMSSG 136 >gi|220924579|ref|YP_002499881.1| flagellar basal body rod protein FlgF [Methylobacterium nodulans ORS 2060] gi|219949186|gb|ACL59578.1| flagellar basal body rod protein [Methylobacterium nodulans ORS 2060] Length = 248 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/206 (5%), Positives = 37/206 (17%), Gaps = 6/206 (2%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68 + ++ I N+ N + R T V+ Sbjct: 7 IGLSAQVALGRELEVIANNMANVSTTGFKARTTRFQEYLMPKASAETFRRPDRRLSYVID 66 Query: 69 A------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A I + + A + + ++ Sbjct: 67 AGTPLDLSQGPIETTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLVTSDGNL 126 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 + + + ++ + N Sbjct: 127 VLGDGGPIQFNPQETGAAIGPDGTISTNQGNRGKLRLVRFSDPQALSNAGANLYAATAAP 186 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208 ++ V +S ++ ++ Sbjct: 187 LPAGTQARVEPGAVERSNVSPVLTMT 212 >gi|268317780|ref|YP_003291499.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] gi|262335314|gb|ACY49111.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] Length = 242 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 14/115 (12%) Query: 17 ASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------KNMFDKVLHAH 70 ++ A N+ N + Y + E + + ++ L Sbjct: 18 QQERLA---NNLANVNTAGYKQERFFVEALNERLDAERSPRSDRRLTQWNDLTQGALEHT 74 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125 S + F + + + + R E Y + + ++ Sbjct: 75 GSPLDVAIEGDGFFVVTDA-----ATGATFYTRAGQFRLDGEGYLRTIDGLLVEG 124 >gi|226313072|ref|YP_002772966.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC 100599] gi|226096020|dbj|BAH44462.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC 100599] Length = 152 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 18/117 (15%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPENV 50 MSL N + + + +I NI NA+ Y R+ + Sbjct: 1 MSLFQGINTSASALTANRLRLDTISSNIANAEVTRANFVDGAWQPYRRKMVELSPQTNGT 60 Query: 51 TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 N + S + G Q + + + + P Sbjct: 61 --------FDNFLQAAVGTVSGSQGGQGVKVTAIQEDNTPFKRVYDPSHPDADQDGY 109 >gi|86149025|ref|ZP_01067257.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596860|ref|ZP_01100096.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 84-25] gi|218562179|ref|YP_002343958.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840383|gb|EAQ57640.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190549|gb|EAQ94522.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 84-25] gi|112359885|emb|CAL34673.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928561|gb|EFV07858.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 305] Length = 164 Score = 47.7 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77 >gi|134095099|ref|YP_001100174.1| basal-body rod protein [Herminiimonas arsenicoxydans] gi|133739002|emb|CAL62050.1| Flagellar basal-body rod protein FlgC (Putative proximal rod protein) [Herminiimonas arsenicoxydans] Length = 134 Score = 47.7 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54 MSL +FN A + + SQ+ + NI NA + Y + P T Sbjct: 1 MSLFNIFNVAGSAMSAQSQRLNVVSSNIANAESTTSADGKTYRAKQVEFQSVPMAGATST 60 Query: 55 QRSENKNMFDKV 66 + + D Sbjct: 61 GVKVRQVVEDAS 72 >gi|224437224|ref|ZP_03658201.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313143684|ref|ZP_07805877.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313128715|gb|EFR46332.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] Length = 277 Score = 47.7 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 9/137 (6%), Positives = 27/137 (19%), Gaps = 19/137 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVVTQ 55 + + + + I N+ N + + R D + E + + Sbjct: 1 MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60 Query: 56 RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 + ++ + + S L + Sbjct: 61 TRKAAKFLNRTMNRVPIISEEYTDRSVGSLAQTDNPLDFALQRDNAFFVIKTPDGIRYTR 120 Query: 104 ISKLRDSLESYSKNLSE 120 + + N Sbjct: 121 DGNFNIDNDGHLVNKDG 137 >gi|221640826|ref|YP_002527088.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides KD131] gi|221161607|gb|ACM02587.1| Hypothetical Protein RSKD131_2727 [Rhodobacter sphaeroides KD131] Length = 239 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ S+ NI N + R + T + + S + + Sbjct: 12 QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130 + + F + E + + E + + L Sbjct: 68 QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDSDGNRLLDAGAAP 127 Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190 + A + + L + +A Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184 Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 + S + +S I R + Y + L R + Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 >gi|254474364|ref|ZP_05087750.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] gi|214028607|gb|EEB69442.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] Length = 239 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 36/123 (29%), Gaps = 9/123 (7%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64 Q+ ++ + NI NA Y + + +P ++ R+ N ++ Sbjct: 12 QSGLM---REMRVVANNIANAATTGYRSEGLIFSEFIQSAPGQESLSMARANIRNTSLAQ 68 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 L + + ++ M + + + + +++ Y + Sbjct: 69 GQLTQTGGDLDLALEGDGYFMVETPMGERLTRSGTFSTNAAGDLVTMDGYRVLDAGRAPM 128 Query: 125 KTV 127 Sbjct: 129 FVP 131 >gi|167034946|ref|YP_001670177.1| flagellar basal body rod protein FlgC [Pseudomonas putida GB-1] gi|166861434|gb|ABY99841.1| flagellar basal-body rod protein FlgC [Pseudomonas putida GB-1] Length = 147 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + +N Sbjct: 1 MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGG 60 Query: 55 QRSENKN 61 +S ++ Sbjct: 61 SQSLFED 67 Score = 39.2 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ M+Q +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVL 143 >gi|218679061|ref|ZP_03526958.1| hypothetical protein RetlC8_09354 [Rhizobium etli CIAT 894] Length = 101 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56 MS+ + N A + + + +I N+ N+ Y R +T T T Sbjct: 1 MSISGITNTALSGMRAQTTRIGAIANNVANSSTSGYARLNTSLTSVASGGVQATVS 56 >gi|218887603|ref|YP_002436924.1| hypothetical protein DvMF_2517 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758557|gb|ACL09456.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 259 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 16/247 (6%), Positives = 59/247 (23%), Gaps = 8/247 (3%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 +LF + + +++ + D + ++ + +R + Sbjct: 8 SLFGALTNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIANVRSKKLFP 67 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + + + E+ + + + + + + Sbjct: 68 EPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVRTPEGEFYTRNGNFIQTAD 127 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + + + +N L + Sbjct: 128 GQLVTAMGHAVQGDGGDIALPPGEAVQISDDGQIFAGGALVGQLNMVTVNDLTALEKLGG 187 Query: 406 NSIGWL-EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N N + +++ Y V + E+ +I+ ++ + K+ Sbjct: 188 NMYRLRPGSNAGEVPAERAY-------VAQGYLEASNVEVVSEMVNMIEAQRQFEAYQKV 240 Query: 465 IMFTDKM 471 + TD + Sbjct: 241 MQTTDSI 247 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 12/154 (7%), Positives = 29/154 (18%), Gaps = 39/154 (25%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46 SL + +I N+ N + Y R + Sbjct: 8 SLFGAL--------TNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIAN 59 Query: 47 ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 P +V + + + + + +F ++ Sbjct: 60 VRSKKLFPEPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVR-------TPE 112 Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + + D A Sbjct: 113 GEFYTRNGNFIQTADGQLVTAMGHAVQGDGGDIA 146 >gi|168334478|ref|ZP_02692649.1| Flagellar basal body rod protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 153 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD---NKN---YVRRDTMTTISPE 48 MS + + A + I +N+ N + + Y RR + P Sbjct: 1 MSFFSGMDIAATGLTAQRFRLDVITQNLANINSTRTPDGGPYQRRTVLFESIPM 54 >gi|303328382|ref|ZP_07358820.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861712|gb|EFL84648.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 264 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/226 (6%), Positives = 46/226 (20%), Gaps = 20/226 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56 + + I N+ N + Y R + + R Sbjct: 1 MQDALFSGLFGALTTEHRMNFIANNLANVNTHGYKRDTLAFKDTMASYAHDEIREPLMNL 60 Query: 57 -----------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYI 104 + + ++ E N Sbjct: 61 RSAPLFPEPKNMARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRN 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISN 162 S + L T + + Q I ++ + + + Sbjct: 121 GHFLLSGDGTVMTPQGYPLQGTGGNVVIPAGTRNVLIGGDGQVIADGAVVNQIALINVDD 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + ++ DA+ + + + + + ++ Sbjct: 181 PQNLEKLGHNLFRPREKVAVAEGDAYLAGARLEQGFAEAANVQVVT 226 Score = 41.6 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 15/192 (7%), Positives = 54/192 (28%), Gaps = 19/192 (9%) Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + ++ + + + L + + Sbjct: 73 ARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRNGHFLLS------ 126 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + G + NV AG +++ + + + ++ L + Sbjct: 127 GDGTVMTPQGYPLQGTGGNVVIPAGTRNVLIGGDGQVIADGAVVNQIALINVDDPQNLEK 186 Query: 403 YARNSI---GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 N + D++ + + ++ V + E+ +I+V++ + Sbjct: 187 LGHNLFRPREKVAVAEGDAYLAGA-------RLEQGFAEAANVQVVTEMVNMIEVQRQFE 239 Query: 460 ISNKLIMFTDKM 471 K++ +D + Sbjct: 240 AYQKVMQSSDSL 251 >gi|138896905|ref|YP_001127358.1| flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] gi|134268418|gb|ABO68613.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] Length = 345 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 6/35 (17%), Positives = 13/35 (37%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37 +L A + ++ + N+ NA+ Y Sbjct: 70 MLRGLYTAASGMLAQQRRVDWLTNNLANAETPGYK 104 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 47/194 (24%), Gaps = 13/194 (6%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 + L+ DP G + D + + Sbjct: 159 GDIKETGLSTDVALVDGQVPVDPTTGERGTLFFAVENDQGETRYTRNGHFTLSPDDYLTT 218 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403 +G ++ G N F +P + L Sbjct: 219 QDGWYVLDGNGERIAIPSESFTVRDDGTITAENRTIARLGVVFAANPKTVVKEGNGL--- 275 Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463 RS L V + + + V+++ ++ L+ +++ + K Sbjct: 276 ----------FRSTDGPLPQAPGNVTYMVKQGFIERSNVDIERTMTDLLAAYRAFEANQK 325 Query: 464 LIMFTDKMLQTLLE 477 +I D+ L + Sbjct: 326 IIQAYDRSLDKAVN 339 >gi|32477363|ref|NP_870357.1| FlgF [Rhodopirellula baltica SH 1] gi|32447914|emb|CAD77434.1| FlgF [Rhodopirellula baltica SH 1] gi|327537336|gb|EGF24069.1| Flagellar basal-body rod FlgF [Rhodopirellula baltica WH47] Length = 273 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/172 (8%), Positives = 33/172 (19%), Gaps = 23/172 (13%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49 S+ + + + I N+ N D + T+ Sbjct: 23 SMPYGVYLSAAGAQAQNHRLQQISHNLANVDTPGFKPSQTILQARFSELIEEGMVPPGLG 82 Query: 50 -----VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 VT + E + K+ + Sbjct: 83 GADDIGGGVTIQPEQTQFGVGAIRTTGRETDFA------LHDKKSFFVLQRGDEQLLTRA 136 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 N D + + + T E +A +++ Sbjct: 137 GDFMFDSTGTMVNSGGDPVLGKGGRPIQIDPRRPFTVGSEGTITQAGETQQL 188 Score = 41.6 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 9/181 (4%) Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367 + F I+ + + + R + L G + N Sbjct: 90 GVTIQPEQTQFGVGAIRTTGRETDFALHDKKSFFVLQRGDEQLLTRAGDFMFDSTGTMVN 149 Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 G P L V T E + + ++ + Sbjct: 150 SGGDPVLGKGGRPIQIDPRRPFTVGSEGTITQAGETQQLMLAQPASYGDLANVGGNLFRP 209 Query: 428 VFN---------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + ++ V+ + +I+ ++Y + ++I D +L +L+ Sbjct: 210 LAEFSLVPDSDRNVVAGSLEQSAVSPTGTMMEMIETSRAYEANIQMIKNQDSVLGSLIGR 269 Query: 479 V 479 V Sbjct: 270 V 270 >gi|57238273|ref|YP_178646.1| flagellar basal body rod protein FlgC [Campylobacter jejuni RM1221] gi|57167077|gb|AAW35856.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni RM1221] gi|315057945|gb|ADT72274.1| Flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni S3] Length = 164 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNERINKDNNFLKYENPLND 77 >gi|256003243|ref|ZP_05428235.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281418479|ref|ZP_06249498.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|255992934|gb|EEU03024.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281407563|gb|EFB37822.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939268|gb|ADU73302.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 259 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 5/185 (2%), Positives = 29/185 (15%), Gaps = 21/185 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ + S+Q + N+ N + + + + Sbjct: 1 MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPDMLVRRINDSRSASN 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 L + + + + Sbjct: 61 PSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYY 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + ++ + + + + + + Sbjct: 121 TRDGSFALNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFT 180 Query: 162 NLRRF 166 + Sbjct: 181 DTTTL 185 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 10/195 (5%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 N + E+ +K + + T + Sbjct: 68 VQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYYTRDGSFA 127 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLE 402 + + G + + + + + + + + TL + Sbjct: 128 LNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFTDTTTLRK 187 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + E + D + + Y VN E+ +I + +SY + Sbjct: 188 VGSNLVQRTENTQEQPFD---------GVVRQGYLEQSNVNSINEMINMITIMRSYEANQ 238 Query: 463 KLIMFTDKMLQTLLE 477 K++ D L+ + Sbjct: 239 KILQAQDGTLEKAVN 253 >gi|254470324|ref|ZP_05083728.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062] gi|211960635|gb|EEA95831.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062] Length = 136 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTIS 46 M + A + + + I NI NA Y R+ + S Sbjct: 1 MDFIKSMFIAASGLKAQTGRMRVIAENIANADSTGQTPGEDPYRRKVPTFSSS 53 Score = 40.0 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 21/40 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN E++ + + +SY + ++ + M+Q L+ ++ Sbjct: 96 NVNTLVEMADMQEATRSYEANLNVVKSSRSMMQKTLDILR 135 >gi|170722894|ref|YP_001750582.1| flagellar basal body rod protein FlgC [Pseudomonas putida W619] gi|169760897|gb|ACA74213.1| flagellar basal-body rod protein FlgC [Pseudomonas putida W619] Length = 147 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + +N Sbjct: 1 MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGG 60 Query: 55 QRSENKN 61 +S ++ Sbjct: 61 SQSLFED 67 Score = 38.5 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ M+Q +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVL 143 >gi|182418329|ref|ZP_02949624.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237666973|ref|ZP_04526958.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377711|gb|EDT75255.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237658172|gb|EEP55727.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 255 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 10/242 (4%) Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299 N ++ + D S KG + + + Sbjct: 23 SNDLVNSTTTGYKGTDIGFKDLMTESLDRKGNPIVNKNAVNGTGVRIGTNYANNKQGNLL 82 Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359 + K +A + + L DG I + + G Sbjct: 83 NTGLKTDLAIDGKGYFALQDPDGTISYTRDGNFKIDSNGSLVTASGVKVYVQYEPGFSEG 142 Query: 360 KFLWNVKNLAGYP-DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 ++ N+A I+ D PV + + N ++ + + Sbjct: 143 DPAFDSDNIAIDGQGGISMNIDGNVALVGSIPVFTAIGDKGFVPKGNNM--FVPSDDAQI 200 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 I + + V+ E S +I ++++ +S+K I D + +++ Sbjct: 201 TLSDDY------DIRQGFLEASNVDAAEVFSDVILTQRAFQLSSKAITTADDIW-SMINS 253 Query: 479 VK 480 ++ Sbjct: 254 MR 255 Score = 44.6 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 16/203 (7%), Positives = 41/203 (20%), Gaps = 23/203 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 + VF ++ ++ + ++ N+ Y D Sbjct: 1 MFNVFATGKSGMTAYQEKMDYLSNDLVNSTTTGYKGTDIGFKDLMTESLDRKGNPIVNKN 60 Query: 49 NVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106 V R +K L + + AL++ Sbjct: 61 AVNGTGVRIGTNYANNKQGNLLNTGLKTDLAIDGKGYFALQD------PDGTISYTRDGN 114 Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166 + S + + S + I+ ++ + Sbjct: 115 FKIDSNGSLVTASGVKVY-VQYEPGFSEGDPAFDSDNIAIDGQGGISMNIDGNVALVGSI 173 Query: 167 LSELTVVNDAIKFKTASKHDAHD 189 + + K + D Sbjct: 174 PVFTAIGDKGFVPKGNNMFVPSD 196 >gi|303240291|ref|ZP_07326810.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus CD2] gi|302592201|gb|EFL61930.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus CD2] Length = 137 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 12/33 (36%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 + + + I +NI N D Y R+ Sbjct: 15 SLDATATRNEVIAQNIANVDTPGYKRKTVSFEE 47 >gi|188579923|ref|YP_001923368.1| flagellar basal body rod protein [Methylobacterium populi BJ001] gi|179343421|gb|ACB78833.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 242 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 9/158 (5%), Positives = 33/158 (20%), Gaps = 1/158 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + ++ + N+ N + + + + Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLARSNRGEV-AFVGPG 59 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + A L + ++ +L + + Sbjct: 60 KNTLSRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + Q + I ++ L + Sbjct: 120 VVDPGGGPLLLDPQAGPPTIGRDGSIHQGVNQVGALGV 157 >gi|256830177|ref|YP_003158905.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] gi|256579353|gb|ACU90489.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] Length = 258 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 13/206 (6%), Positives = 36/206 (17%), Gaps = 24/206 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 + A + SI N+ N + + + Sbjct: 1 MQDSSYSAVFGALTQQHRLDSIANNLANVNTTGFKSEKLAFRDTFRRYAHDMVDPNTTLT 60 Query: 49 ------NVTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 ++ Q ++ + D + + + + F ++ Sbjct: 61 DKVPWPQANLLAQPRISEAVIDMSQGPMKSTGNPLDLAIAGDGFFRVQTPEGEFMTRQGV 120 Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159 + L + E+ E Sbjct: 121 YHLSAEGFVVDAHGNQLLGAGGPLQVPEGGAVLVDADGGFSVNGELIDTIELVRVEDPRA 180 Query: 160 ISNL-RRFLSELTVVNDAIKFKTASK 184 + + L + S Sbjct: 181 LEKVGNSLLRIRPGADAQAIPAEDST 206 Score = 40.0 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 18/37 (48%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + + + + VN+ E+ +I+ +++ K+I Sbjct: 205 STVEQGFLEAANVNVVSEMVNMIEAMRAFEAYQKMIS 241 >gi|242278483|ref|YP_002990612.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] gi|242121377|gb|ACS79073.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] Length = 255 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/145 (6%), Positives = 28/145 (19%), Gaps = 21/145 (14%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQ 55 S+ + A + + N+ N + + R + + Sbjct: 4 SIFSALFGAMS----NEHRIDISANNLANVNTTGFKRDNCAFQDTFIRFAHDYVADAKPY 59 Query: 56 RSENKNMFDKVLHAH---------SSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYI 104 + + + + A S Q+ + + Sbjct: 60 LRDKDQLPEAKIMARPRLSEEVIDMSQGSFQKTGNPLDLAIRGDGFFKVQKNGETFLTRN 119 Query: 105 SKLRDSLESYSKNLSEDILGKTVID 129 S E + + Sbjct: 120 GVFTLSSEGTLVTEQGYPVMANGGE 144 Score = 44.3 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 28/50 (56%) Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 +++ Y V + E+ +I+ ++S+ + K+I TD++ Q +++ V Sbjct: 201 GEVAQGYIEKSNVEVVNEMVAMIECQRSFEMYQKMITTTDQLDQKVIQQV 250 >gi|255023253|ref|ZP_05295239.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-208] Length = 243 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 2/114 (1%) Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + + Y D VA + L++ Sbjct: 121 GTNQVFSPTSXGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 180 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 ++ S + Q IS S V+L E L+ + + Sbjct: 181 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQ 232 >gi|125975103|ref|YP_001039013.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|125715328|gb|ABN53820.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] Length = 259 Score = 47.3 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 60/227 (26%), Gaps = 20/227 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ + S+Q + N+ N + + + + P+ + R N + Sbjct: 1 MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPD----MLVRRINDS- 55 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMM-----SADDHYNNSPTHYISKLRDSLESYSKN 117 + S+ G+ +Q + E+ +N+ IS + + + Sbjct: 56 -----RSASNPSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVP 110 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + + + + + + + L ++ I Sbjct: 111 GGNEEYTEYYTRDGSFALNAYGQLVT-----KEGYLVMGQNGVITLNSENFSVSDDGTII 165 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224 + A L + S ++ + + V Sbjct: 166 QDGEAVARLLIRNFTDTTTLRKVGSNLVQRTENTQEQPFDGVVRQGY 212 Score = 46.2 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 10/195 (5%) Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343 N + E+ +K + + T + Sbjct: 68 VQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNEEYTEYYTRDGSFA 127 Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLE 402 + + G + + + + + + + + TL + Sbjct: 128 LNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFTDTTTLRK 187 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 N + E + D + + Y VN E+ +I + +SY + Sbjct: 188 VGSNLVQRTENTQEQPFD---------GVVRQGYLEQSNVNSINEMINMITIMRSYEANQ 238 Query: 463 KLIMFTDKMLQTLLE 477 K++ D L+ + Sbjct: 239 KILQAQDGTLEKAVN 253 >gi|46578927|ref|YP_009735.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603472|ref|YP_967872.1| hypothetical protein Dvul_2429 [Desulfovibrio vulgaris DP4] gi|46448339|gb|AAS94994.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563701|gb|ABM29445.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232785|gb|ADP85639.1| flagellar basal-body rod protein FlgF [Desulfovibrio vulgaris RCH1] Length = 260 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/245 (8%), Positives = 65/245 (26%), Gaps = 5/245 (2%) Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 LF + + + + +N D + ++ + +R + Sbjct: 9 LFGALTTEHRLNNIANNLANVNTNGYKRDVLAFKDTMALFAHDEIMEPMANVRSKKLFPE 68 Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346 + + + + S+ + +G + + + Sbjct: 69 PLHVARPRIAVARTDFSQGSFHYTSDPLDLAISGNGFFKVRTPEGEFYTRNGHFRQTSDG 128 Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406 ++ +S+ N+ + + V ++ L + N Sbjct: 129 QLVTMQGWPVLSEGGDINLPQGKNLQVASDGRIAVDGVDVGQLQVVTVSDLEGLEKLGGN 188 Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 + +S+ Y T V + E+ +I+ ++ + K++ Sbjct: 189 LY-----RLREGSTAGEVPVGPDVIVSQGYIETSNVEVVNEMVNMIETQRQFEAYQKVMQ 243 Query: 467 FTDKM 471 +D + Sbjct: 244 TSDTV 248 >gi|328947992|ref|YP_004365329.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens DSM 2489] gi|328448316|gb|AEB14032.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens DSM 2489] Length = 153 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44 M L N A + + I NI NA Y ++ + Sbjct: 1 MGLFTSINIAATGMSVERLRTDVISNNIANATTTRTQEGGAYRKQSVIVE 50 Score = 43.9 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 ++ Y VN+ E+ +I ++Y ++ +I + +M + LE Sbjct: 105 NKGYVEYPNVNIVNEMVNMISANRAYEANSSVIQGSKEMFASALEI 150 >gi|302874587|ref|YP_003843220.1| flagellar basal-body rod protein FlgC [Clostridium cellulovorans 743B] gi|307690802|ref|ZP_07633248.1| flagellar basal body rod protein FlgC [Clostridium cellulovorans 743B] gi|302577444|gb|ADL51456.1| flagellar basal-body rod protein FlgC [Clostridium cellulovorans 743B] Length = 143 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 M + + + + + + NI N + Y R+ M + Sbjct: 1 MGVFDSMRISSSGLSAERLRMDIVSSNIANVNTTRTEDGGPYKRKIGMFQEN 52 >gi|300311350|ref|YP_003775442.1| flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1] gi|300074135|gb|ADJ63534.1| Flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKNYVRRDTMTTISPENVTVV 53 MSL +FN A + + SQ+ + NI NAD Y + + P Sbjct: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTP-YKAKQVVFQAIPVGGVKD 59 Query: 54 TQRSENKNMFDK 65 + + D+ Sbjct: 60 SGVKVAAVVEDQ 71 Score = 37.3 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 Y VN EE+ +I ++Y + + + ML Sbjct: 88 NGYVAMPNVNPVEEMVNMISASRAYQTNVETMNTAKAML 126 >gi|16126302|ref|NP_420866.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|221235079|ref|YP_002517515.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus NA1000] gi|13637950|sp|Q06171|FLGF_CAUCR RecName: Full=Flagellar basal-body rod protein flgF gi|13423542|gb|AAK24034.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|220964251|gb|ACL95607.1| flagellar basal-body rod protein flgF [Caulobacter crescentus NA1000] Length = 245 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 10/138 (7%), Positives = 25/138 (18%), Gaps = 17/138 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52 + + ++ + NI NA+ + T V Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 V +N + F ++ + + E Sbjct: 61 VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQ-------ANGGERYTRDGRFTTNPE 113 Query: 113 SYSKNLSEDILGKTVIDN 130 + + Sbjct: 114 GILVTQAGAPVLDDGGGQ 131 Score = 36.5 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 12/167 (7%), Positives = 37/167 (22%), Gaps = 9/167 (5%) Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 + G+ + ++ + + Sbjct: 70 FTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGG 129 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 + + + L + + + T + N + Sbjct: 130 GQITIDPR-LGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLY--------RN 180 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 V I + V E++ LI+++++Y K++ Sbjct: 181 TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMM 227 >gi|294508678|ref|YP_003572737.1| flagellar basal-body rod protein [Salinibacter ruber M8] gi|294345007|emb|CBH25785.1| flagellar basal-body rod protein [Salinibacter ruber M8] Length = 260 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + T V+ EL+ +I++++ + K I TD +L Sbjct: 191 SGASFAAGDAQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVL 250 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 9/123 (7%), Positives = 23/123 (18%), Gaps = 3/123 (2%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 F A + Q + N+ NA Y + T + + ++ Sbjct: 24 FQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRRLEQA 82 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILG 124 ++ + E + + + Sbjct: 83 NDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPEGREVM 142 Query: 125 KTV 127 Sbjct: 143 GEG 145 >gi|223040442|ref|ZP_03610716.1| flagellar basal-body rod protein FlgC [Campylobacter rectus RM3267] gi|222878292|gb|EEF13399.1| flagellar basal-body rod protein FlgC [Campylobacter rectus RM3267] Length = 165 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%) Query: 1 MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46 MS + F+ + + + I NI NA+ + Y RR+ + Sbjct: 1 MSNYLSDFDISGYGLSAQRFRMNVISSNIANANTVRTAEGGPYRRREVIFKAV 53 >gi|291288380|ref|YP_003505196.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290885540|gb|ADD69240.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 252 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 6/68 (8%), Positives = 25/68 (36%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 ++ A + ++ I N+ N + + + + + N + + Sbjct: 1 MINGLYTATSGMAMQQRRMDIISSNLANLNTVGHKKEVGVFSEYIANASETPDDIIRNSD 60 Query: 63 FDKVLHAH 70 ++K++++ Sbjct: 61 YNKMINST 68 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 20/46 (43%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Y VN EE+ +I+ + + +K+I D++ + Sbjct: 201 LMTGYLEGSNVNPVEEMVKMIEASRGFETYSKIITTFDEIDSKAVN 246 >gi|226327748|ref|ZP_03803266.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198] gi|225203452|gb|EEG85806.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198] Length = 134 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT-ISPENVTVV 53 MSL ++F+ + + + SQ+ N+ NAD+ Y + + +P V Sbjct: 1 MSLFSIFDISGSALSAQSQRLNVSASNMANADSVAGPDGEPYRAKQVVFQVNAPAGQEVG 60 Query: 54 TQR 56 R Sbjct: 61 GVR 63 Score = 38.1 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 17/36 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 V++ E+ I +SY + +++ ++Q L Sbjct: 95 NVDVVGEMINTISASRSYQANVEVMNTAKSLMQKTL 130 >gi|57167572|ref|ZP_00366712.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228] gi|305433078|ref|ZP_07402234.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20] gi|57020694|gb|EAL57358.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228] gi|304443779|gb|EFM36436.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20] Length = 164 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77 >gi|320107041|ref|YP_004182631.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925562|gb|ADV82637.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 249 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 12/169 (7%), Positives = 31/169 (18%), Gaps = 7/169 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVTQ 55 + + A N +Q + N+ N + + + V Sbjct: 1 MDSGLYAAYNGLLARTQALDTAANNLSNTNTVGFRAQRDYFRGVLAGMPPGDLESQVGDA 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + L I A + + + + Sbjct: 61 VNSFGILGGNTLDLSQGEITATGNPLDLALDGSGFFAVQTTHGTRYTRDGGFLRAADGTL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + D + + I ++ L Sbjct: 121 ETRRGDGVLDATGKKIIVPSGEVQVGGDGTISVLTAEGSAIAGKLGILN 169 >gi|253573516|ref|ZP_04850859.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral taxon 786 str. D14] gi|251847044|gb|EES75049.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral taxon 786 str. D14] Length = 149 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 10/54 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTT 44 M++ F + + + I NI NA+ Y R+ + Sbjct: 1 MNISDSFGISSSALTAQRLRMDVISSNIANAETTRAKIVDGKAVPYRRKTVVMA 54 >gi|24459279|gb|AAL86632.1| FlgG [Vibrio fischeri ES114] Length = 43 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 5/43 (11%), Positives = 14/43 (32%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 + ++ + A+I N+ NA + + + Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFED 43 >gi|242278628|ref|YP_002990757.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens DSM 2638] gi|242121522|gb|ACS79218.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens DSM 2638] Length = 147 Score = 47.3 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 M+ + + + + N+ NA + Y R+ SP Sbjct: 1 MNFFTALDIGASGLKAQREYLNVVSMNMANAKTTRTAEGGPYRRKSVSMESSP 53 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 17/34 (50%) Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 N+ EE+ +I + +SY + + + +M L Sbjct: 108 NVVEEMVNMITISRSYEANAQAVDSAKRMFNRAL 141 >gi|229592132|ref|YP_002874251.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens SBW25] gi|229363998|emb|CAY51548.1| putative flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 147 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + Sbjct: 1 MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60 Query: 55 QRSENKN 61 S ++ Sbjct: 61 SDSLFQD 67 Score = 39.2 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +S+ + +++ M+Q +L Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143 >gi|89902478|ref|YP_524949.1| flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] gi|89347215|gb|ABD71418.1| Flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] Length = 246 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 30/140 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + N A+ + A + N+ N + + P + R Sbjct: 1 MDRLIYTAMSGANAAAHRQAVLSNNLANVSTNGFRAELSTFRAVPVRGDGASTRVMAIEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + SA R L + + S E S Sbjct: 61 TAGYVDTPGSAQRTGRGLDAMTTGNAWFAVQGLDGTESYTRSGSFEVSPEGTLVTNSGLT 120 Query: 123 LGKTVIDNAEEVVQNFNTSA 142 + T Sbjct: 121 VLGDGGAPISIPTGGEVTIG 140 >gi|23100412|ref|NP_693879.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] gi|22778645|dbj|BAC14913.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] Length = 269 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 8/127 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTISPENVTVVT 54 +L A + +Q S+ NI NA+ Y T + + + T Sbjct: 1 MLRGLYTAASGMITQQRQQESLSNNIANANTPGYKADQTTIRAFPELLLQQTGSSSQIPT 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + ++ + Q + +F + + L Sbjct: 61 SQGGMNFPISQTIGPINTGVYVQETVPNFAQGDVQETGLSTDVAIIQGQVPDENGFLFFS 120 Query: 115 SKNLSED 121 +N + + Sbjct: 121 VQNENGE 127 >gi|301168115|emb|CBW27701.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 146 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 M LL + + ++ ASI NI NA + Y R++ + P Sbjct: 1 MDLLTSLKISSSGLAANKKRMASISSNIANAQTTRTAEGGPYRRKEVVFGSEPA 54 >gi|325567534|ref|ZP_08144201.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus ATCC 12755] gi|325158967|gb|EGC71113.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus ATCC 12755] Length = 158 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 9/91 (9%), Positives = 24/91 (26%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 + N ++Q+ I NI N + Y + + + + + Sbjct: 47 KTAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAVTEASVSQVKPK 106 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + + + + D N Sbjct: 107 ITENATTSIKDNGNNVDLEVEMLDQAANGLY 137 >gi|310659663|ref|YP_003937384.1| flagellar basal body rod protein [Clostridium sticklandii DSM 519] gi|308826441|emb|CBH22479.1| putative Flagellar basal body rod protein [Clostridium sticklandii] Length = 372 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 32/374 (8%), Positives = 97/374 (25%), Gaps = 15/374 (4%) Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 + +R + S +T + +V + ++ + + Sbjct: 4 GIYTATNGMRTDSKRIDVITSNIANSQTTAFKKDVLVT--ESFPEQLMVKLNGVENNLRP 61 Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218 + ND+I + + D + I+ Sbjct: 62 TRQLVNVDPPADFQTNDSIVSIEITS----GYFRMEDRHGIGYHKSAKITRDEEGYLRTA 117 Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278 + SD T + N + + + +G++ + Q A + A + Sbjct: 118 LRDSDSNT-HAKFGAYLLDVNGNPISAPDGAITLLPNGILQAGGQDVARVITAVNAQVIG 176 Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338 + + + + + +A + + + ++ Sbjct: 177 TMNGGALADRSMINFNQGNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSINPE 236 Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398 + Y N +S + ++ + +++ + V NT Sbjct: 237 GILVDYSGNVVLSASDNEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIANTES 296 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 + + ++ + + Y V++ E++ +I + + Y Sbjct: 297 MIKQGESYLTMADGIEADEAEFD--------GQVLQGYLEGSNVDIISEMAEMINLLRGY 348 Query: 459 NISNKLIMFTDKML 472 K+I D ++ Sbjct: 349 ESGQKVIRSYDDIM 362 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 90/321 (28%), Gaps = 16/321 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + A N S++ I NI N+ + + +T PE + V EN Sbjct: 1 MFRGIYTATNGMRTDSKRIDVITSNIANSQTTAFKKDVLVTESFPEQLMVKLNGVENNLR 60 Query: 63 FDKVLHAHSSAIGQQRL--------LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + L Q + +++ H + T + Sbjct: 61 PTRQLVNVDPPADFQTNDSIVSIEITSGYFRMEDRHGIGYHKSAKITRDEEGYLRTALRD 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174 S + + G ++D + + + + A + + T+ Sbjct: 121 SDSNTHAKFGAYLLDVNGNPISAPDGAITLLPNGILQAGGQDVARVITAVNAQVIGTMNG 180 Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT------LF 228 A+ ++ + + + L I + +N + + G + L Sbjct: 181 GALADRSMINFNQGNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSINPEGILV 240 Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286 + + N +V ++ I ID G +V++ G + + + Sbjct: 241 DYSGNVVLSASDNEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIANTESMIKQ 300 Query: 287 QNQLDEMARVLIGSFSEKDPI 307 MA + +E D Sbjct: 301 GESYLTMADGIEADEAEFDGQ 321 >gi|294140182|ref|YP_003556160.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12] gi|293326651|dbj|BAJ01382.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12] Length = 138 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN A + + S + + NI NAD Sbjct: 1 MSLFNIFNVAGSGMSAQSIRLNTTASNIANAD 32 Score = 39.2 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134 >gi|144245|gb|AAA23042.1| hook protein [Caulobacter vibrioides] Length = 52 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51 MS+ + + S A+I NI N + + R + + + Sbjct: 1 MSINSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGN 51 >gi|15596275|ref|NP_249769.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PAO1] gi|107100523|ref|ZP_01364441.1| hypothetical protein PaerPA_01001548 [Pseudomonas aeruginosa PACS2] gi|116049007|ref|YP_792191.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa UCBPP-PA14] gi|152984084|ref|YP_001349652.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PA7] gi|218892958|ref|YP_002441827.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa LESB58] gi|254234214|ref|ZP_04927537.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa C3719] gi|254239436|ref|ZP_04932758.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 2192] gi|296390558|ref|ZP_06880033.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PAb1] gi|313106033|ref|ZP_07792292.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 39016] gi|9946994|gb|AAG04467.1|AE004539_9 flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PAO1] gi|115584228|gb|ABJ10243.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa UCBPP-PA14] gi|126166145|gb|EAZ51656.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa C3719] gi|126192814|gb|EAZ56877.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 2192] gi|150959242|gb|ABR81267.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PA7] gi|218773186|emb|CAW28998.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa LESB58] gi|310878794|gb|EFQ37388.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 39016] Length = 146 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + S + ++ NI NA+ + Y R + + + + Sbjct: 1 MSLASVFNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQGDS 60 Query: 55 QRSENKN 61 Sbjct: 61 GSLFADQ 67 Score = 40.8 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 22/36 (61%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +++ +M+Q +L Sbjct: 107 NVNVVEEMADMISASRAFQTNAEMMNTAKQMMQKVL 142 >gi|260886628|ref|ZP_05897891.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] gi|260863771|gb|EEX78271.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] Length = 142 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 15/43 (34%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + Q A+ + I NI N + N+ + + + Sbjct: 13 NRALDVMQRGMGAANLRQEVISHNIANVNTPNFKKSNVVFEDL 55 >gi|269792948|ref|YP_003317852.1| flagellar basal-body rod protein FlgC [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100583|gb|ACZ19570.1| flagellar basal-body rod protein FlgC [Thermanaerovibrio acidaminovorans DSM 6589] Length = 139 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 16/73 (21%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT---------- 44 M + + A + +I N+ N + + YVRR + Sbjct: 1 MKVFRSVDVAGSALTAHRVWMDAISSNLANVNTTRTPEGGPYVRRVPIFQERLMAAMKDG 60 Query: 45 ISPENVTVVTQRS 57 + V VV Sbjct: 61 STSSGVKVVAIER 73 Score = 42.3 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ E++ ++ ++Y + ++ M + ++ ++ Sbjct: 99 NVNVVREMADMMVASRAYEANLTVVETGKAMWNSAIDIMR 138 >gi|239826611|ref|YP_002949235.1| flagellar basal body rod protein FlgC [Geobacillus sp. WCH70] gi|239806904|gb|ACS23969.1| flagellar basal-body rod protein FlgC [Geobacillus sp. WCH70] Length = 150 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 11/34 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ + + + I N+ N D Sbjct: 1 MSIFQSLDITASALTAQRLRMDVISSNMANVDTT 34 >gi|27464953|gb|AAN63050.1| flagellar component FlgF [Vibrio vulnificus] Length = 193 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 + A + Q N+ N + R D S + Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGLPTRVFSMT 59 Query: 61 -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 N + + + + + + + L+ Sbjct: 60 ERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLL 113 Query: 116 KNLSE 120 N S Sbjct: 114 SNASG 118 >gi|148546704|ref|YP_001266806.1| flagellar basal body rod protein FlgC [Pseudomonas putida F1] gi|148510762|gb|ABQ77622.1| flagellar basal-body rod protein FlgC [Pseudomonas putida F1] Length = 147 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + +N + Sbjct: 1 MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGS 60 Query: 55 QRSENKN 61 +S ++ Sbjct: 61 SQSLFED 67 Score = 38.9 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ M+Q +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVL 143 >gi|85859195|ref|YP_461397.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85722286|gb|ABC77229.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 255 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 29/154 (18%), Gaps = 3/154 (1%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + + ++ NI N + + + + Sbjct: 18 MRTYGIADVGNACLRTMAK-LDCSANNIANVSTPGFKVEFLNYLMRDSGRSSNDKAPSYD 76 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + + S A+ + L E +++ S Sbjct: 77 ELLTRDY--SSGALQRTDNPLEVALLGEGFFIIQTAKGVAYTRRGDFTLNMKRELVTKSG 134 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 D + + V + Sbjct: 135 DPVLGKTGTIVLNGEDVRIDESGNVHIGENQVGQ 168 >gi|121596115|ref|YP_988011.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42] gi|222112270|ref|YP_002554534.1| flagellar basal-body rod protein flgc [Acidovorax ebreus TPSY] gi|120608195|gb|ABM43935.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42] gi|221731714|gb|ACM34534.1| flagellar basal-body rod protein FlgC [Acidovorax ebreus TPSY] Length = 134 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++FN + + + SQ+ + N+ N D Y R + +P Sbjct: 1 MSMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPESAA 60 Query: 55 QRSENK 60 + Sbjct: 61 GVRVSS 66 Score = 37.3 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 2/133 (1%) Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 S S GS + +A ++ + + V + A Sbjct: 2 SMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPESAAG 61 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 + ++++ +H + + + E Y VN EE+ +I +SY + +++ Sbjct: 62 VRVSSIQESDQPGRRVHDPANPMADA--EGYVTHSNVNAVEEMVNMISASRSYQNNVEVM 119 Query: 466 MFTDKMLQTLLEG 478 +L L+ Sbjct: 120 NTAKTLLLKTLQM 132 >gi|322379367|ref|ZP_08053738.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1] gi|322380862|ref|ZP_08054952.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5] gi|321146713|gb|EFX41523.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5] gi|321148185|gb|EFX42714.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1] Length = 165 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 1 MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 M + + F+ + + + I NI NA+ + Y R++ + Sbjct: 1 MRMFLSSFDISGYGLSAQRVRANLISSNIANANTTRTDEGGPYRRQEAVFKS 52 >gi|116619479|ref|YP_821635.1| flagellar basal-body rod protein FlgC [Candidatus Solibacter usitatus Ellin6076] gi|116222641|gb|ABJ81350.1| flagellar basal-body rod protein FlgC [Candidatus Solibacter usitatus Ellin6076] Length = 144 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 MSL ++ + + + + +V N+ NA+ + Y R+D + + + Sbjct: 1 MSLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFAS 60 Query: 55 Q 55 Sbjct: 61 V 61 >gi|293605001|ref|ZP_06687397.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii ATCC 43553] gi|292816606|gb|EFF75691.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii ATCC 43553] Length = 139 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54 MSLL++F+ A + + SQ+ N+ NA Y R + ++P + Sbjct: 1 MSLLSIFDIAGSALSAQSQRMNVTASNLANADSVVGPDGQPYRARQVVFQVNPAAGQAMG 60 Query: 55 QR 56 Q Sbjct: 61 QE 62 Score = 38.9 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + Y + V+ E +I +SY + +++ ++Q L Sbjct: 92 QGYISMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTL 134 >gi|284041507|ref|YP_003391847.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM 14684] gi|283945728|gb|ADB48472.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM 14684] Length = 149 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPE 48 M L + A + + N+ NA Y R++ + S Sbjct: 1 MGLFDAIDIAGSGLTAERLRMDVTAENLANAQTTRAADGGPYQRKEVVLQQSGG 54 Score = 36.9 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 26/121 (21%), Gaps = 8/121 (6%) Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427 K + G + + L + + Sbjct: 29 ANAQTTRAADGGPYQRKEVVLQQSGGSSFSTMLTGAIGGVRASEASKGVEVAGIVEDQTA 88 Query: 428 VFNHIS--------ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 Y VN E+ LI +SY + + +M LE + Sbjct: 89 QRQVYDPGHPDADPRGYVAMPNVNPVTEMVDLISSSRSYEANVTAMQSAKQMFTKTLELL 148 Query: 480 K 480 + Sbjct: 149 R 149 >gi|322435953|ref|YP_004218165.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321163680|gb|ADW69385.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 251 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 11/162 (6%), Positives = 33/162 (20%), Gaps = 8/162 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54 + + A +Q + N+ NA + + + + V Sbjct: 1 MDSGLYAAYTGLLARTQALDTAANNLANASTNGFRAQRDSFSGVLASGLAAGQQGSQVGV 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + A + S + Sbjct: 61 GINSYGVLGGSSADQSQGPMVTTSNPLDVAINGTGFFAIRTAHGVRYTRDGAFTLSAQGQ 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156 + + + + T + S ++ A + Sbjct: 121 LQTGAGEPVLNTAMAPITLPSGEVQISGDGTVAVQTAAGSGV 162 >gi|86356306|ref|YP_468198.1| flagellar basal body rod protein FlgF [Rhizobium etli CFN 42] gi|86280408|gb|ABC89471.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 244 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 39/150 (26%), Gaps = 8/150 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + + + + ++ +I N+ N + + + N V Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 57 SENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 N + ++ L + + ++ AL + T + S+ Y Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIRETGELVSIRGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + + E V + + Sbjct: 121 PVLDAGGAPIQLDTKAGEPAVGSDGIIYQG 150 >gi|26991079|ref|NP_746504.1| flagellar basal body rod protein FlgC [Pseudomonas putida KT2440] gi|24986114|gb|AAN69968.1|AE016635_4 flagellar basal-body rod protein FlgC [Pseudomonas putida KT2440] gi|313497759|gb|ADR59125.1| FlgC [Pseudomonas putida BIRD-1] Length = 147 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + +N + Sbjct: 1 MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGS 60 Query: 55 QRSENKN 61 +S ++ Sbjct: 61 SQSLFED 67 Score = 38.5 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ M+Q +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVL 143 >gi|118589943|ref|ZP_01547347.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] gi|118437440|gb|EAV44077.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] Length = 243 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/221 (8%), Positives = 57/221 (25%), Gaps = 7/221 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + S + ++ RN+ N + Y + + Sbjct: 1 MESALYVALSAQVALSNRLETVARNVANMNTAGYRADEVKFAELVS--KAGQDKVSFSTG 58 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSED 121 +K + ++ + E A N + + +L+ + + L+ Sbjct: 59 GEKYISRQYGSLNKTDNPLDLAVEGEAWFAIRDANGNLSYTRDGRLQIGNDGTLRTLTG- 117 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + ++ + + + + + + I + FL + Sbjct: 118 ---QQILGAGGQPISLDPDAGTPLITQSGEISQNDVGIIGQVGLFLIPDDAQLTRAENSA 174 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 + D + + G + ++ S Sbjct: 175 VIPDKPVIPVQTYDTNGVRQGYVEGSNINPVREMTKMIMIS 215 Score = 36.9 bits (83), Expect = 6.8, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 22/46 (47%) Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 N + + Y +N E++ +I + +++ + K+I +++ Sbjct: 185 QTYDTNGVRQGYVEGSNINPVREMTKMIMISRAFESATKMIDTSNE 230 >gi|1870712|gb|AAB48836.1| FlgF [Sinorhizobium meliloti] Length = 240 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 20/211 (9%), Positives = 57/211 (27%), Gaps = 5/211 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--SENK 60 + A + ++ ++ NI N++ + + + SE + Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGE 60 Query: 61 NMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 A SA+ ++ ++ + T + +++ Y Sbjct: 61 EFLSTKTGALRTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKGYPVLD 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + E V + VQ + + S + Sbjct: 121 AGGPPIQLNGGAGEIAVGADGAIHQNGVQTCLLGLYEADFSKGFMRYDNSSVMPAAQPNR 180 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 + + + +Q++S++I I+ Sbjct: 181 RDRFDVGVMQGFLEESNVNGIQEMSQLIMIT 211 >gi|162147479|ref|YP_001601940.1| flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] gi|161786056|emb|CAP55638.1| putative flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] Length = 254 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 43/190 (22%), Gaps = 16/190 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSE 58 A + + S+ N+ NA+ + + + + Sbjct: 13 YIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEEVYTQD 72 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 D++ A+ Q L F E A + + + Sbjct: 73 RSTYQDRL----QGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVDG 128 Query: 119 SEDILGKTVIDNAEEVVQNFN---TSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 S + L +N ++ S + + + N + E + Sbjct: 129 SGNPLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYLLR 188 Query: 176 AIKFKTASKH 185 + Sbjct: 189 PTTPTRNVAN 198 >gi|211639036|emb|CAR67650.1| flagellar hook protein flge [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 72 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 15/48 (31%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53 F++A + N A+ I NI NA + V Sbjct: 2 AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVG 49 >gi|148258452|ref|YP_001243037.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] gi|146410625|gb|ABQ39131.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] Length = 246 Score = 46.9 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 8/119 (6%), Positives = 29/119 (24%), Gaps = 13/119 (10%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------------ENVTVVTQ 55 + + ++ N+ N+ Y + +++V Sbjct: 8 ISLSRLMALQRRLDVAANNVANSQTTGYRAKQLAFQEYLKPDKPPEIGEKPERPLSLVDA 67 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + + ++ A++ + S + +LE Sbjct: 68 ALPFTSSASGAFRSTGNPLDLAINGNAYFAIQTSQGERYTRDGSFSLDAKGRLVTLEGL 126 >gi|319764537|ref|YP_004128474.1| flagellar basal-body rod protein flgc [Alicycliphilus denitrificans BC] gi|330826753|ref|YP_004390056.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans K601] gi|317119098|gb|ADV01587.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans BC] gi|329312125|gb|AEB86540.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans K601] Length = 134 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++FN + + + SQ+ + N+ N D Y R + +P Sbjct: 1 MSMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPDSSA 60 Query: 55 QRSEN 59 + Sbjct: 61 GVRVS 65 >gi|23016761|ref|ZP_00056514.1| COG1558: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 138 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 21/40 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN E+ + + ++SY + ++I + M+ ++ +K Sbjct: 99 NVNPLIEMMDMREAQRSYEANLQVIQTSRTMMDRTMDLLK 138 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 1 MSLLAVFN---KAQNICNNASQQFASIVRNIENADN-----KN--YVRRDTMT 43 M + + N A++ SQ+ I N+ NAD+ + Y R+ Sbjct: 1 MVMDPLMNSSKIAKSGLKVQSQRLRVISENLANADSLAQTPEGLPYQRKTVTF 53 >gi|229826300|ref|ZP_04452369.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC 49176] gi|229789170|gb|EEP25284.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC 49176] Length = 147 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 MS+ + + + I +NI N + Y R++ + T Sbjct: 1 MSIFGAMDISATGMTAQQLRTDVIAQNIANINTTRDQNGNVYRRKNVVFTE 51 >gi|302037602|ref|YP_003797924.1| flagellar basal-body rod protein FlgC [Candidatus Nitrospira defluvii] gi|300605666|emb|CBK41999.1| Flagellar basal-body rod protein FlgC [Candidatus Nitrospira defluvii] Length = 149 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-----DNKN-YVRRDTMTTISP 47 M L + + + + I N+ NA Y RRD + +P Sbjct: 1 MELTDSLAVSVSALDAHRHRLNVIASNLANAQSTKTSTGGPYRRRDVVFQAAP 53 Score = 43.5 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ EE+ +I ++Y + + I T M LE + Sbjct: 110 NVNVMEEMVNMIGASRAYEANVQAINATRTMWNRALEIGR 149 >gi|295697723|ref|YP_003590961.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413325|gb|ADG07817.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 29/266 (10%), Positives = 80/266 (30%), Gaps = 26/266 (9%) Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266 ++ + + +M L + +++ + + V ++ + S Sbjct: 18 VNAMANDAANMNTTGYKSEDLAFSDLLAVHYAPGVRIPAPDTPPGLPVGSGVRAAARVSD 77 Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326 +G ++ + D + + + ++ + L ADG L Sbjct: 78 WSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSFQVSVDPAGQATLVTADGHVVL 137 Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386 D + ++ + G ++ ++A ++ + K Sbjct: 138 DEYGAPIDLTGVDLSTL------AIGPDGRITGSVAGTPTDIAVLGRVVFDHPQRLIKAG 191 Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446 AG +T + A F + + Y V L + Sbjct: 192 NNLYDAGTEVPLTPADIADPL--------------------RFGRLRQGYLEASNVELTD 231 Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472 ++ L++ E+ Y +S + ++ D+M+ Sbjct: 232 VMTKLMEAERLYALSARAVLTADQMM 257 Score = 43.9 bits (101), Expect = 0.053, Method: Composition-based stats. Identities = 13/168 (7%), Positives = 33/168 (19%), Gaps = 19/168 (11%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--------- 57 + + AS ++ + N + Y D + R Sbjct: 4 LWTGASGMSAASHWVNAMANDAANMNTTGYKSEDLAFSDLLAVHYAPGVRIPAPDTPPGL 63 Query: 58 ---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 +V + + E Sbjct: 64 PVGSGVRAAARVSDWSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSF-----QV 118 Query: 115 SKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEI 160 S + + T + +E + + ++ + D I + Sbjct: 119 SVDPAGQATLVTADGHVVLDEYGAPIDLTGVDLSTLAIGPDGRITGSV 166 >gi|217977819|ref|YP_002361966.1| flagellar basal body rod protein [Methylocella silvestris BL2] gi|217503195|gb|ACK50604.1| flagellar basal body rod protein [Methylocella silvestris BL2] Length = 241 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/210 (7%), Positives = 49/210 (23%), Gaps = 12/210 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60 + + + + ++ +I N+ N Y + V S + Sbjct: 1 MQSGLYVSLSGLVALDRRLTTIAANVANQSTPGYRAEEVEFKSLLSKAGANPVAFVSNGE 60 Query: 61 NMFDKVL---HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + + + + ALK + + ++ + Sbjct: 61 SFISRRGGVPIKTDGPLDVAVQGHGWLALK-------TPDGTVYTKDGRMHMEESGALVS 113 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177 + + + + I ++ + + I +L N + Sbjct: 114 VDGFPVLDAGATPILLDPAAGPPTIAQDGMITQNSHQVGAIGIFSLDGQAKLKRYTNSGV 173 Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + + + + I I Sbjct: 174 MSDLPATAELDFSNNGVHQGFIEGANINPI 203 >gi|311033283|ref|ZP_07711373.1| flagellar basal-body rod protein [Bacillus sp. m3-13] Length = 273 Score = 46.9 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 27/148 (18%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49 +L F A + ++ + N+ NA+ Y + Sbjct: 1 MLRGFYTATAGMISQQRRMEMMSNNLSNANTPGYKADQGSLRSFPDMLLQRMEQASGTNT 60 Query: 50 VTVVT-----QRSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96 + ++ R L + L Q+ + + Sbjct: 61 FSPMSNPNDPVRLSTGVYLQETKPKHTQGDLRPTGNDTDLAILNQNLPENASVYFTVEQV 120 Query: 97 NNSP-THYISKLRDSLESYSKNLSEDIL 123 + +P E Y S + Sbjct: 121 DGTPRYTRNGNFSIDPEGYLTTNSGLYV 148 >gi|30019789|ref|NP_831420.1| flagellar basal body rod protein FlgC [Bacillus cereus ATCC 14579] gi|29895334|gb|AAP08621.1| Flagellar basal-body rod protein flgC [Bacillus cereus ATCC 14579] Length = 137 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMQVTSNNIVNANTPAAPGADLYERRSVVLESN 50 >gi|222100200|ref|YP_002534768.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM 4359] gi|221572590|gb|ACM23402.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM 4359] Length = 139 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 MS + N + + + + NI NA+ Y R+ + Sbjct: 1 MSEFDIMNISATGMSAQRLRVEIVSTNIANAETTRTEMGEPYRRKVPVFAE 51 Score = 40.4 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ LI +++Y+ + T M+ + L+ + Sbjct: 91 ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKNMVNSALQIGR 138 >gi|168699694|ref|ZP_02731971.1| flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246] Length = 238 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 12/148 (8%), Positives = 29/148 (19%), Gaps = 16/148 (10%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55 A + AS+Q N+ ++ Y R + ++T Sbjct: 1 GLYSAGSALVIASEQQEVTAHNLAHSTTPGYRERGLVFESLDRHIGHAEEPTGDITGART 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + + N R + Sbjct: 61 VQAYNDFRPGPIQQTGHPYDLAIGEA------DRFFVLNGPNGPLYTRNGCFRVDPQGRL 114 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + L + + A Sbjct: 115 VSQAGYALQTDQGNVTIPEGTSRVVIAS 142 >gi|154687759|ref|YP_001422920.1| FlhO [Bacillus amyloliquefaciens FZB42] gi|154353610|gb|ABS75689.1| FlhO [Bacillus amyloliquefaciens FZB42] Length = 265 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/251 (8%), Positives = 71/251 (28%), Gaps = 13/251 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI NA+ Y + R+ + + Sbjct: 1 MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKE------------DQGSIRAFPEML 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + IG + LK + + I+ + + + ++ Sbjct: 49 LSRIEGDKKTKIGSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAE 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L V A V + +++ + + + + L + + T Sbjct: 109 LFYPV-QTAGGVRYSKSSTFSLNENNQLTINGNLVLSTNGQPITVDNEKFTVSENGTVTT 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + + ++ + + +++ ++ + ++ Sbjct: 168 NGRPAGQIDIRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDV 227 Query: 243 YTVTSESNPIF 253 + +E + Sbjct: 228 TSTYTEMTEAY 238 >gi|152990358|ref|YP_001356080.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] gi|151422219|dbj|BAF69723.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] Length = 238 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 13/186 (6%), Positives = 41/186 (22%), Gaps = 2/186 (1%) Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN--MFDKVLHA 69 + + A +Q ++ N+ N + + + + +L+ Sbjct: 13 SGASRAMEQLDTVTNNLANVNTTGFKEMVVKEMSQRLDENGGDSNHLFVFPRFKESILNF 72 Query: 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129 + + F + + + E + + L T Sbjct: 73 AQGPLKHTQNRLDFALEGKGFFIVQKGDQKFLTRNGHFLINNEGLLVDQNGHYLLDTADK 132 Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189 ++ + + A + + T T Sbjct: 133 PVRLEGKSEINVTEDGSIYQNGAFVTKLQIKNYDNVTIIGDTYYEPQGNELTVDAKVRQG 192 Query: 190 FLDQRD 195 +L+ + Sbjct: 193 YLESSN 198 >gi|225181585|ref|ZP_03735026.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167693|gb|EEG76503.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 251 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 32/137 (23%), Gaps = 13/137 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50 ++ A + S + +I N+ N++ + R + V Sbjct: 1 MIRGLYTAASGMMVESTRQETITNNLANSETTGFKRDLALQRSHGEQPVVRLGDRQPFGV 60 Query: 51 TVVTQRSENKNMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 V ++ D + + ++ + + + Sbjct: 61 RPVIGSLGVGSLIDGIHTSHEQGSLQETGRDLDVAMAGDGYFVVETEQGLRYTRNGAFSI 120 Query: 110 SLESYSKNLSEDILGKT 126 + N + T Sbjct: 121 DADRMLVNDQGHRVMGT 137 Score = 40.8 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 + Q V + + + V +E+ ++ ++Y + +++ D ML Sbjct: 187 AAEGAEQQPVTGMVKQGFLEGSNVQAVQEMVQMLAAMRAYETNQRVVQAQDDML 240 >gi|188587424|ref|YP_001918969.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352111|gb|ACB86381.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 280 Score = 46.6 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 68/245 (27%), Gaps = 7/245 (2%) Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292 RD++ + S + S N G S + G++ + + ++V Q L E Sbjct: 36 RDMSVKSEFSNMLISRINDPENIGPPQSPQVDNRPYIGELGTGVLLDETVKDFSQGPLKE 95 Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352 L N + F G L + + + + Sbjct: 96 TGNTLDLGLEGDGFFTVNGPDGEEYFTRSGALTLSYDETSEEATLVTLQGDPVLGEEGII 155 Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412 + + D D+ + L Y N + E Sbjct: 156 QLSGEKDITVTENGAIYQGQDDEAELIDNL-------ALVNFENPQGLARYGDNLLEQTE 208 Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 ++ + + + + VN +E++ +I ++Y + + I D L Sbjct: 209 ESGAPQELDLDGEDFGILSVHQGKIESSNVNSVDEMTGMINALRAYESNQRAIQGHDDTL 268 Query: 473 QTLLE 477 + + Sbjct: 269 ERAVN 273 Score = 41.2 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 4/36 (11%), Positives = 11/36 (30%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38 +L + + + N+ N + + R Sbjct: 1 MLRGLYTSSSGMLTQQRVQEVKSNNMANLNTTGHKR 36 >gi|304407727|ref|ZP_07389378.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304343210|gb|EFM09053.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 288 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 6/35 (17%), Positives = 12/35 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37 +L A ++ ++ NI N + Y Sbjct: 1 MLRGLYTAAAGLTTQQRRHDTVTNNISNINTPGYK 35 Score = 39.2 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + Y V+ + + L+ ++Y + K++ F DK L + Sbjct: 238 VKQGYYERSNVDSAQSMVDLMAALRAYEANQKVVQFYDKSLDKAVN 283 >gi|254511077|ref|ZP_05123144.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] gi|221534788|gb|EEE37776.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 9/138 (6%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64 Q+ + + NI NA+ Y ++ + + P+N ++ R+E N ++ Sbjct: 11 QSGLM---NEMRMVANNIANANTTGYRQQGVVFSEFIRDMPDNPSLSLTRAEVRNTSLQQ 67 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 VL + F ++ S + +++ + S Sbjct: 68 GVLTETGGSFDFAIEGDGFFMVETPAGNRLTRAGSFSPNAEGDLVTMDGHRVLNSNGAPV 127 Query: 125 KTVIDNAEEVVQNFNTSA 142 D A V + T + Sbjct: 128 FVPPDAAAIDVGSDGTLS 145 >gi|218673219|ref|ZP_03522888.1| flagellar basal body rod protein FlgF [Rhizobium etli GR56] Length = 244 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 11/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61 + + + + ++ +I N+ N + + + + + Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + L+ S + + F + + D + ++ Sbjct: 61 QGNDYLNEQSGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTIKETGELVSIRGY 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + D I + ++ Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGVIYQAGRQVGSLGLFEADISKGYLRYE 172 Query: 182 ASKHDAHD 189 S D Sbjct: 173 NSGIMTTD 180 >gi|163750572|ref|ZP_02157810.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99] gi|161329727|gb|EDQ00716.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99] Length = 139 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN A + + S + + NI NAD Sbjct: 1 MSLFNIFNVAGSGMSAQSIRLNTTASNIANAD 32 Score = 38.9 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134 >gi|291562042|emb|CBL40858.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 263 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + N + D S + + G ++ +E+ +I+ +++++ + K+I +D Sbjct: 194 VGDNEYKAQDGMEASLKSDAVLQKGALENSGTDMAKEMVHVIECQRAFSYAVKMITTSDD 253 Query: 471 MLQTLLEGVK 480 + + + ++ Sbjct: 254 I-EGTINSLR 262 Score = 43.1 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 5/120 (4%), Positives = 23/120 (19%), Gaps = 18/120 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48 + F +++ + + N+ N +N + + + + Sbjct: 1 MNMSFYTGAAGAGQFTKKLSVVSNNLANINNTGFKPKTAAFSELIHYNLNDSENAQTELQ 60 Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108 + + + + + + D Sbjct: 61 TGSGARVERTWTDFSTAGATQTGKEYDYAIMEPNAFFMIQ----DPASGEITYTRNGHFH 116 >gi|323341368|ref|ZP_08081612.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] gi|323091245|gb|EFZ33873.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] Length = 234 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 10/165 (6%), Positives = 41/165 (24%) Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372 L+ + + + F + + N Sbjct: 65 GNFTFGNQIDGSYLNTQSGSMHETDLKTDFAINGAGYFTVRMNNGQIGYTRNGNFTENRQ 124 Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432 + + N + + N+ L+ + + + + + + Sbjct: 125 GQLVTQEGYAVLGANGQAIQANEANPNFMIVSFNNASALQNQGNTIYTSNTAGTQIRSEV 184 Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + + + + LI+ + + + K++ ++ L + Sbjct: 185 VQGMLEGSNTDTAQNMVDLIQTSREFEANQKVLSTANQTLSKAVN 229 >gi|34558103|ref|NP_907918.1| flagellar basal-body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483821|emb|CAE10818.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGG [Wolinella succinogenes] Length = 277 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 12/212 (5%), Positives = 51/212 (24%), Gaps = 20/212 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VVTQ 55 + + + + + I N+ NA+ + R D + + Q Sbjct: 1 MQSGYYSSTGGIVTQFHRLDMISNNLANANTTGFKRDDVVIGDFLRLYEQQKEPLPLEDQ 60 Query: 56 RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103 E ++ + + + + + Sbjct: 61 TREAAKFLNRAMDRVPSIVEEYTDRSIGGITPSENRFDFALQSENAYFMIETPEGIRYTR 120 Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-ISN 162 + E + + + + + E + + + + + + Sbjct: 121 DGSFTLNSEGRLVTKEGFAVLPREFVQSRQYIDIPDGVVIEADRNGNLYSRTLNNDELGD 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194 + + + K+ + + +++ +R Sbjct: 181 IIPLGNIAIASFENPKYLEKTGKNLYEYPQER 212 >gi|238927421|ref|ZP_04659181.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884703|gb|EEQ48341.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 139 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 6/43 (13%), Positives = 15/43 (34%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 +V + + + A+ + + NI N + + R Sbjct: 8 TSVIDVSSRALSAANLRHEVLSNNIANVNTPYFRRSHVRFEDL 50 >gi|218461633|ref|ZP_03501724.1| flagellar basal body rod protein FlgF [Rhizobium etli Kim 5] Length = 244 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 11/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61 + + + + ++ +I N+ N + + + + + Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + L+ + + + F + A D + ++ Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRGY 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + D I + ++ Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGVIYQTGRQVGSLGLFEADISKGYLRYE 172 Query: 182 ASKHDAHD 189 S D Sbjct: 173 NSGIMTTD 180 >gi|296135675|ref|YP_003642917.1| flagellar basal-body rod protein FlgC [Thiomonas intermedia K12] gi|294339845|emb|CAZ88208.1| Flagellar basal-body rod protein flgC (Putative proximal rod protein) [Thiomonas sp. 3As] gi|295795797|gb|ADG30587.1| flagellar basal-body rod protein FlgC [Thiomonas intermedia K12] Length = 138 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI---SPENVT 51 MSL + + A + S + + N+ NA++ Y R+ + S V Sbjct: 1 MSLFSALDVANSGLTAESYRLNVVASNLANANSAVSSNGQPYRAREVVFAAQPLSGPGVP 60 Query: 52 VVT 54 Sbjct: 61 AGV 63 >gi|224437870|ref|ZP_03658817.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] gi|313144319|ref|ZP_07806512.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] gi|313129350|gb|EFR46967.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] Length = 163 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43 L+ F+ + + + +I NI NA+ + Y RR+ + Sbjct: 3 LSSFDISGYGLSAQRVRVNTISSNIANANTTRTDEGGPYRRREVVF 48 >gi|21672602|ref|NP_660669.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008458|sp|Q8K9K8|FLGC_BUCAP RecName: Full=Flagellar basal-body rod protein flgC gi|21623233|gb|AAM67880.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 136 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA 31 MSLL + N A + + S++ I N+ NA Sbjct: 1 MSLLNILNIAGSAMSAQSEKINVIASNLANA 31 >gi|121997321|ref|YP_001002108.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila SL1] gi|121588726|gb|ABM61306.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila SL1] Length = 189 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46 MSL+ + A N + ++ N+ NA+ + Y R + + Sbjct: 1 MSLMNAIDVAGTGMNAQQLRLNTVASNLANAETVASSPEEAYRARQPVFAAA 52 Score = 41.9 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475 VN EE++ +I +S+ + +++ + ML+TL Sbjct: 149 SNVNTVEEMTNMISASRSFQNNVEVMNTSRDLMLETL 185 >gi|256004780|ref|ZP_05429755.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 2360] gi|255991230|gb|EEU01337.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 2360] gi|316940781|gb|ADU74815.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 1313] Length = 134 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45 +I +NI N D Y R+ Sbjct: 24 EAISQNIANVDTPGYKRKTVAFEE 47 >gi|114799934|ref|YP_758986.1| flagellar basal body rod protein FlgF [Hyphomonas neptunium ATCC 15444] gi|114740108|gb|ABI78233.1| flagellar basal-body rod protein FlgF [Hyphomonas neptunium ATCC 15444] Length = 238 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/214 (9%), Positives = 46/214 (21%), Gaps = 6/214 (2%) Query: 21 FASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79 + N+ N+ Y + T Q + + Sbjct: 19 MQVVANNLANSSTTGYKSDRAIFTEFLVSTGDSPDQSLSMGGLGGHAFQLEQGGLNFTGG 78 Query: 80 LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139 E + + S ++ + + A Sbjct: 79 RFDLAIQGEGFFMVETPQGERLTRAGHFQLSGAGQLVDMQGNPVLS-----AGGNPITIP 133 Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199 A +V I + L++ + D+ + A A + Sbjct: 134 DDATDVSFGEDGTISGNGQIIDQVGIMLADGQLTRDSNTYFAAEGGVAPTQDAKLVQGAL 193 Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233 + S + + + R Y + L + R Sbjct: 194 EQSNVSPVLEVSRMIEVQRAYEAGQALLEKEDQR 227 >gi|114777413|ref|ZP_01452410.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans PV-1] gi|114552195|gb|EAU54697.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans PV-1] Length = 148 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN--YVRRDTMTTIS 46 LL+ + + + + + + NI NA ++ Y RR + Sbjct: 5 LLSSMHISASGMSAQRTRMDIVAENIANAGSTRTSEGGPYRRRQVIFQAV 54 >gi|207110390|ref|ZP_03244552.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 107 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 9/106 (8%) Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428 + + + + + L + N E + + + ++ Sbjct: 1 FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 60 Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 F I Y T VN L+ LI +++ Y+++ + D M++ Sbjct: 61 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 106 >gi|281417194|ref|ZP_06248214.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum JW20] gi|281408596|gb|EFB38854.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum JW20] Length = 134 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45 +I +NI N D Y R+ Sbjct: 24 EAISQNIANVDTPGYKRKTVAFEE 47 >gi|37525839|ref|NP_929183.1| flagellar basal body rod protein FlgC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785268|emb|CAE14209.1| Flagellar basal-body rod protein FlgC (Putative proximal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 134 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMT-TISPENVTVV 53 MSLL++F+ A + + SQ+ N+ NAD+ Y + + +P Sbjct: 1 MSLLSIFDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETG 60 Query: 54 TQRSE 58 R Sbjct: 61 GVRVS 65 >gi|325295398|ref|YP_004281912.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065846|gb|ADY73853.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 238 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 9/106 (8%), Positives = 23/106 (21%), Gaps = 2/106 (1%) Query: 20 QFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77 Q + NI N + + + + M+ P+N + + + Sbjct: 21 QLDTAANNIANINTPGFKKLIEEEMSQHIPDNKGDANNLLIFPRFKATHIVLEQGTLQKT 80 Query: 78 RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 A + E + + + Sbjct: 81 DNPLDLALKGNGFFAVKTKTGELYTRNGHFFLNAEGKLVDSKGNPV 126 >gi|290979388|ref|XP_002672416.1| predicted protein [Naegleria gruberi] gi|284085992|gb|EFC39672.1| predicted protein [Naegleria gruberi] Length = 5213 Score = 46.6 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 48/436 (11%), Positives = 107/436 (24%), Gaps = 24/436 (5%) Query: 15 NNASQQFASIVRNIENAD----------NKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64 + + NI N + + T + + + Sbjct: 1602 MVNQTKLENTKSNITNHNLTNEHTSFNETIPFSSNSTELDN--GTIYTNETNTNSTINNT 1659 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 SS + +F +D+ + IS S + + N E Sbjct: 1660 PSNGTSSSNTTESNNGTNFVGQTNGTDSDNSTGTNTNTTISDNSTSTNNVTNNSLEVGSN 1719 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184 T + + + + + ++ L I+ ++ T S Sbjct: 1720 STGNFSNVRLNNTELATNQSLTSNSSNFSNYTVLNITCDTCLYGTNETLDKNSTSVTNST 1779 Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244 Q + STI N++ TS T I +S T Sbjct: 1780 EWFMGNGTQ-----SNFTSYSNESTIFSNSSVWENTTSSENYNASTSNGTILQHYNSSDT 1834 Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304 ++ I+I+ S N S + + + + + L +F+ Sbjct: 1835 YEGGNSTIWIN---TSLNVTSPDCNNSMNSSIIFNQTGLENSTGIL----SNHTFTFNTT 1887 Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 NS + + + + +N + + + + + Sbjct: 1888 FESTTNSSSEIASWNTSFQSNNTVNGTVFSQNSTTLNTSSLNETTSSLLENATALENCPV 1947 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 N + + + F+ N E S S++ Sbjct: 1948 GSNCTLNNSAHKFGRELEDNSQTFNQTLNETLTNNSTNILSNFSSSSENQTSHSNNQTKH 2007 Query: 425 SQVVFNHISESYSNTV 440 N IS + +++ Sbjct: 2008 EDNSDNQISNNQTSSS 2023 >gi|289523577|ref|ZP_06440431.1| flagellar basal-body rod protein FlgB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503269|gb|EFD24433.1| flagellar basal-body rod protein FlgB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 135 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 14/33 (42%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 S++F +I +N+ N + Y R + Sbjct: 12 GMKGLSKRFEAISQNVANTNTPGYARSEVTFED 44 >gi|209549487|ref|YP_002281404.1| hypothetical protein Rleg2_1893 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535243|gb|ACI55178.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 101 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56 MS+ + N A + + + +I N+ N+ Y R +T T T Sbjct: 1 MSISGITNTALSGMRAQTPRIGAIANNVANSSTSGYARLNTSLTSVASGGVQATVS 56 >gi|104782845|ref|YP_609343.1| flagellar basal body rod protein FlgC [Pseudomonas entomophila L48] gi|95111832|emb|CAK16556.1| flagellar cell-proximal portion of basal-body rod FlgC [Pseudomonas entomophila L48] Length = 147 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + + Sbjct: 1 MSLASVFNIAGSGMSAQNTRLNTVASNIANAETVSSSLDQTYRARHPVFATTFQQAQGGV 60 Query: 55 QRSENKN 61 +S ++ Sbjct: 61 GQSLFED 67 Score = 40.4 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +++ + +L+ M+Q +L Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKTMMQKVL 143 >gi|168182722|ref|ZP_02617386.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796078|ref|YP_002863630.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674102|gb|EDT86063.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229264182|gb|ACQ55215.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 255 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDANGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 19/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + N VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDANGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 >gi|148380596|ref|YP_001255137.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153932501|ref|YP_001384883.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153936688|ref|YP_001388352.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|153938096|ref|YP_001391939.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|148290080|emb|CAL84199.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152928545|gb|ABS34045.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152932602|gb|ABS38101.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|152933992|gb|ABS39490.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319959|gb|ADG00337.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] gi|322806968|emb|CBZ04538.1| flagellar basal-body rod protein FlgF [Clostridium botulinum H04402 065] Length = 255 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 >gi|149912833|ref|ZP_01901367.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] gi|149813239|gb|EDM73065.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] Length = 237 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 46/219 (21%), Gaps = 7/219 (3%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ ++ I NI NA Y + + V S + + + Sbjct: 12 QSGLL---REIQVIANNIANAATTGYREESLIFAEYVKRVENGPSISMATP-SARSISSL 67 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI---LGKTV 127 + F + + + + S G Sbjct: 68 QGGLQPTGGTLDFAIEGDGFFLIEAADGNRLTRAGSFSLSAAGELATHDGHRVLDAGGAP 127 Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187 + + + + + + + E + + Sbjct: 128 VFLPPNATDLRVAADGTISAEGRLIGQIGLVRPLDPNDLIREGGTLFRTDVGTKPVEGSR 187 Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 + I+++ + + R + + T Sbjct: 188 ILQGFLEGSNVDPIAQVARMVEVQRAYEMGQSFLENENT 226 >gi|157376218|ref|YP_001474818.1| flagellar basal body rod protein FlgC [Shewanella sediminis HAW-EB3] gi|157318592|gb|ABV37690.1| flagellar basal-body rod protein FlgC [Shewanella sediminis HAW-EB3] Length = 138 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN A + + S + + NI NAD Sbjct: 1 MSLFDIFNVAGSGMSAQSVRLNTTASNIANAD 32 Score = 38.9 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134 >gi|83944163|ref|ZP_00956619.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] gi|83845030|gb|EAP82911.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] Length = 259 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 14/212 (6%), Positives = 44/212 (20%), Gaps = 13/212 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 + + A + ++ + N+ NA Y + P+ + Sbjct: 17 MSNISYVALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESVPDGSGDNAINYVRESG 76 Query: 61 ---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 + D L + + + + +L ++ K Sbjct: 77 TYLELADGPLMQTGNPMDIAVAGDGWLS-----FQLPGGETG-YSRHGRLVVDVDGQLKT 130 Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--ELEISNLRRFLSELTVVND 175 L + + + + + + L + Sbjct: 131 AGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPMGAG 190 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207 + + Q + S + + Sbjct: 191 MYQLPPNAGQPQQMENPQVKQGFIEGSNVNAV 222 Score = 40.0 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 75/262 (28%), Gaps = 8/262 (3%) Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275 + D + E +I++ ++ T + S + ++ G ++++ Sbjct: 1 MYNAFFRDASAPPEDEMSNISYVALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESV 60 Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335 + + L + + +++ + + + Sbjct: 61 PDGSGDNAINYVRE-SGTYLELADGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGR 119 Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 + V+ Q ++ G L + + V IN Sbjct: 120 LVVDVDGQLKTAGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAIN 179 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 +L + Q+ + + + VN E++ LI ++ Sbjct: 180 EAAQMLPMGAGMY-------QLPPNAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQ 232 Query: 456 QSYNISNKLIMFTDKMLQTLLE 477 ++Y S KL+ D + +T ++ Sbjct: 233 RAYENSVKLMGSDDDLTRTAIQ 254 >gi|187778771|ref|ZP_02995244.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] gi|187772396|gb|EDU36198.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] Length = 255 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGMNRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKM 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQAIDETLGKTVN 249 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 21/241 (8%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + N ++ + F ++ + Sbjct: 61 IKNVIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGMNRNTG-------AREAIFVGNKTIGTDASGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 >gi|78224306|ref|YP_386053.1| flagellar basal-body rod protein FlgC [Geobacter metallireducens GS-15] gi|78195561|gb|ABB33328.1| Flagellar basal-body rod protein FlgC [Geobacter metallireducens GS-15] Length = 147 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 M + + + + + I NI NA++ + Y R+D + +P Sbjct: 1 MDFFSAMQISSSALSAERTRMNLISSNIANANSTRTAEGGPYKRKDAVFAATPA 54 >gi|89098646|ref|ZP_01171528.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911] gi|89086608|gb|EAR65727.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911] Length = 149 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 27/83 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN---------YVRRDTMTT------ 44 MS+ N + + I N+ N + Y R++ + Sbjct: 1 MSMFHSMNTTSSALTAQRLRMDVISSNMANVDSTRGKLVNGEWQPYTRKEVVMQPQEKNF 60 Query: 45 -----------ISPENVTVVTQR 56 + V V R Sbjct: 61 SSFLNTAMNAGSAGSGVRVSEIR 83 >gi|83594174|ref|YP_427926.1| hypothetical protein Rru_A2842 [Rhodospirillum rubrum ATCC 11170] gi|83577088|gb|ABC23639.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/113 (8%), Positives = 20/113 (17%), Gaps = 4/113 (3%) Query: 19 QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----SENKNMFDKVLHAHSSAI 74 +Q + N+ N + Y T+ + N R + + Sbjct: 17 RQLDVVSNNLANMNTNGYQAEQTLFSEYLMNTRDSHFRLPEKLAYTQDAGTYRDLTAGPL 76 Query: 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 E + + E L Sbjct: 77 EHTGNPLDLAINGEGYFEVEDGAGPAYTRGGRFTLDAEGKVVTADGRPLMTDA 129 Score = 42.3 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 I + VN E++ +I+V++SY +NKLI Sbjct: 194 IEQGMIEKSNVNPVVEMTRMIQVQRSYEAANKLI 227 >gi|327193031|gb|EGE59943.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 244 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 10/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61 + + + + ++ +I N+ N + + + + + Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + L+ + + + F + + D + ++ Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRGY 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + D I + ++ Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYE 172 Query: 182 ASKHDAHD 189 S D Sbjct: 173 NSGIMTTD 180 >gi|119899029|ref|YP_934242.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72] gi|119671442|emb|CAL95355.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72] Length = 146 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E Y VN+ EE+ +I +SY + +++ +LQ L+ Sbjct: 100 EGYVEMPNVNVVEEMVNMISASRSYQNNAEVMNTAQTLLQRTLQI 144 Score = 43.5 bits (100), Expect = 0.075, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVT--V 52 MS+L VF A + N S + + N+ NAD+ Y + + P T V Sbjct: 1 MSMLNVFQIAGSALNAQSLRLNTTASNLANADSVIAEDGQPYRAKQVVFAAKPVGATPPV 60 Query: 53 VTQR 56 R Sbjct: 61 GGVR 64 >gi|56460251|ref|YP_155532.1| flagella basal body rod protein [Idiomarina loihiensis L2TR] gi|56179261|gb|AAV81983.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 247 Score = 46.6 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + VN EE++ +I +++ Y ++ KL+ D+ Sbjct: 197 LQIGALEGSNVNSVEEMTHMIALQRQYEMNVKLMKTADE 235 Score = 40.4 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 19/199 (9%), Positives = 39/199 (19%), Gaps = 17/199 (8%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60 A + A N+ NA+ + R S + Sbjct: 5 LWVAMSGAKENMNAVAVRANNLANANTTAFKGDLQQARAMQAFGEGLPTRVFSMTESPGQ 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 N + + Q + A+ + N L + KN + Sbjct: 65 NFASGAIQTTGRNMDVAIKDQGWIAVDD------GSGNERYTRNGSLEVGTDGLLKNSTG 118 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 + + V + +N + + +VN Sbjct: 119 QTVLGN-----NGPIFVPMPIDNLVIGANGNVSIRPMGAPANAMEVIDRIKLVNPPNGNM 173 Query: 181 TASKHDAHDFLDQRDVLLQ 199 D + Sbjct: 174 EKGNDGLFKLKDDQQAFAD 192 >gi|313905150|ref|ZP_07838519.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470053|gb|EFR65386.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 253 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 18/128 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47 + F + + ++ +I N+ N + Y R + +P Sbjct: 1 MYQGFYELTSGLITQQRKLNTISNNMANVETAGYKRDTMTVSTFQEEMLIRTGQTAKKNP 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 ++ V T + + + Q F + N Sbjct: 61 TDLAVTTPIAAADQTYTDF---TQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTRNGAF 117 Query: 108 RDSLESYS 115 + + Sbjct: 118 SVNAQGIL 125 Score = 38.1 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 51/192 (26%), Gaps = 2/192 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 L + + D G+ + G + D + Sbjct: 54 QTAKKNPTDLAVTTPIAAADQTYTDFTQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTR 113 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 N + N + ++ N + N D + + + + + Sbjct: 114 NGAFSVNAQGILCLDNIGTVVGANGGTIR--ITNENFVVDDYGRIMSAAGDGTVYGQLRI 171 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + E N S + + Y ++ +++ ++ +++ Sbjct: 172 TGFEDTGTLHKEDNGMFSAPGGGQDLTGRTRVFNGYLEASNADMIGQMTEMMSSQRALQS 231 Query: 461 SNKLIMFTDKML 472 + +++ D++L Sbjct: 232 AAQMLKMYDQVL 243 >gi|284041497|ref|YP_003391837.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945718|gb|ADB48462.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 232 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 20/231 (8%), Positives = 42/231 (18%), Gaps = 10/231 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVVTQ 55 + A + + +I ++ NA Y V+ Sbjct: 1 MERGLYIAASGMIAEQMRQDAIANDLANASTPGYKADRITQASFGDLLLSNSNTGQVIGP 60 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 KV A + E + S + Sbjct: 61 LGTGAYADSKVTDLRPQATRVTEEPLDLAIVGEGWFGVQTPEGVRYTRNGQFSASPQGQL 120 Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 + + + + A+A KE + + Sbjct: 121 IDQLGRPVLGPGGQPVQLDARGHVRPGSVGVFALANARKEGD---NYFTGAAGGQATGQV 177 Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226 I S D + + + T + + T Sbjct: 178 EIGALEGSGIDPTRTMVDMIASFRAYEAGQKVITTIDDTLRRTSTQVGNAT 228 Score = 40.8 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%) Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + D++ + G++ + +I ++Y K+I D Sbjct: 157 ARKEGDNYFTGAAGGQATGQVEIGALEGSGIDPTRTMVDMIASFRAYEAGQKVITTIDDT 216 Query: 472 L 472 L Sbjct: 217 L 217 >gi|77460471|ref|YP_349978.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens Pf0-1] gi|77384474|gb|ABA75987.1| putative flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 147 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + Sbjct: 1 MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60 Query: 55 QRSENK 60 S + Sbjct: 61 SNSLFQ 66 Score = 38.1 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +S+ + +++ M+Q +L Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143 >gi|85858815|ref|YP_461017.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85721906|gb|ABC76849.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 143 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45 M L F + + I N+ N + Y R+ + + Sbjct: 1 MDFLTSFRICSSGFAAQRAKMDVIASNLANVSTTSTPEGGPYKRKVAIFSS 51 >gi|220930464|ref|YP_002507373.1| hypothetical protein Ccel_3101 [Clostridium cellulolyticum H10] gi|220000792|gb|ACL77393.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 265 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 63/258 (24%), Gaps = 10/258 (3%) Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279 ++ L N T ++ S + +++ Sbjct: 12 MLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTNPSAVVGTMELS 71 Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 V ++ + E F G+ + + Q Sbjct: 72 SDVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQDNTVQEFYTKNG 131 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399 +N DG +V K + +A + Sbjct: 132 SFSLDANNQLVTGDGYAVLGKKGPITLKTGDFTVDSKGNIMQNGAVVDTLRIAQFADSTQ 191 Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459 L + N + ++ + + + VN+ +E+ +I V ++Y Sbjct: 192 LRKLGNNLVMNNGGEVAEFS----------GTVIQGFDEQSNVNVIDEMVDMITVMRAYE 241 Query: 460 ISNKLIMFTDKMLQTLLE 477 + K++ D L+ + Sbjct: 242 ANQKVLQAQDGTLEKAVN 259 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 19/252 (7%), Positives = 55/252 (21%), Gaps = 22/252 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46 ++ + ++ I N+ N + Y + + + Sbjct: 1 MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60 Query: 47 PENVTVV-----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 P V + + + N Sbjct: 61 PSAVVGTMELSSDVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQD 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEI 160 + + + S+S + + ++ ++ T V ++ Sbjct: 121 NTVQEFYTKNGSFSLDANNQLVTGDGYAVLGKKGPITLKTGDFTVDSKGNIMQNGAVVDT 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 + +F + + + +F + S + I +V M Y Sbjct: 181 LRIAQFADSTQLRKLGNNLVMNNGGEVAEFSGTVIQGFDEQSNVNVIDEMVDMITVMRAY 240 Query: 221 TSDGTTLFETVP 232 ++ L Sbjct: 241 EANQKVLQAQDG 252 >gi|323703167|ref|ZP_08114820.1| flagellar basal-body rod protein FlgC [Desulfotomaculum nigrificans DSM 574] gi|323531826|gb|EGB21712.1| flagellar basal-body rod protein FlgC [Desulfotomaculum nigrificans DSM 574] Length = 145 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 9/54 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTI 45 M L F + + + + I N+ N + Y RR + Sbjct: 1 MGLFDSFAISASGMTSERLRLDLIANNVANMNTAGRPNDPNNPVYRRRVPVFAE 54 >gi|308175374|ref|YP_003922079.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens DSM 7] gi|307608238|emb|CBI44609.1| putative flagellar basal-body rod protein [Bacillus amyloliquefaciens DSM 7] gi|328555348|gb|AEB25840.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens TA208] gi|328913716|gb|AEB65312.1| putative flagellar basal-body rod protein [Bacillus amyloliquefaciens LL3] Length = 265 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 13/251 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI NA+ Y + R+ + + Sbjct: 1 MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKE------------DQGSIRAFPEML 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 ++ + IG + LK + + I+ + + + ++ Sbjct: 49 LSRIEGDKKTKIGSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAE 108 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L V A V + +++ Q + + + L + + T+ Sbjct: 109 LFYPV-QTAGGVRYSKSSTFSLNQNNQLTINGNLVLSTNGQPITVDNEKFTVSENGTVTS 167 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + A + + ++ + + +++ ++ + ++ Sbjct: 168 NGRQAGRIDIRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDV 227 Query: 243 YTVTSESNPIF 253 + +E + Sbjct: 228 TSTYTEMTEAY 238 >gi|91791414|ref|YP_561065.1| flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] gi|91713416|gb|ABE53342.1| Flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] Length = 215 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS 72 N Q A+ N+ NA+ Y+R+ T T + + TQ + + + Sbjct: 9 GINTQLQSLATTSNNVANANTPGYLRQ-TSFTQV-LDAQIQTQTQVSSKQLSGAIKQTGN 66 Query: 73 AIGQQRLLQSFEALK 87 L +S ++ Sbjct: 67 VYDFAVLGKSLFVVE 81 >gi|292669735|ref|ZP_06603161.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC 43541] gi|292648532|gb|EFF66504.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC 43541] Length = 140 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 11/41 (26%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 + AS + + NI N + + R Sbjct: 10 TIDIGSRAMAAASLRHEVLSNNIANVNTPYFRRSHVRFEDL 50 >gi|154250382|ref|YP_001411207.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum Rt17-B1] gi|154154318|gb|ABS61550.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum Rt17-B1] Length = 138 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VN+ E+ +I +++Y + I T M+ L+ + Sbjct: 99 NVNIVREMVDMINAQRAYEANATAINTTKAMINAALQIGR 138 Score = 41.9 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%) Query: 2 SLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 S + N + + + I NI N++ Y R+ + Sbjct: 3 SEFNIMNISATGLSAQRFRIEVISTNIANSETTRTENGGPYRRKVPVFQEV 53 >gi|16799765|ref|NP_470033.1| flagellar basal body rod protein FlgG [Listeria innocua Clip11262] gi|16413142|emb|CAC95922.1| lin0690 [Listeria innocua Clip11262] gi|313620081|gb|EFR91589.1| flagellar basal body rod protein FlgG [Listeria innocua FSL S4-378] Length = 259 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 45/218 (20%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R SP V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVARQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQFHTD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + + + + A+ ++ + + Sbjct: 123 QFGFLRTADGANILSSTGEAIQVGQKTAIRAEANGDLYNAETNQYLGRLGTKFVSADQVD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + + + E + Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVD 220 Score = 37.7 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +I T V+L E+ L+ ++ S ++ DK+ Sbjct: 204 AGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQASKNVVNMFDKVYD 250 >gi|91792665|ref|YP_562316.1| flagellar basal body rod protein FlgF [Shewanella denitrificans OS217] gi|91714667|gb|ABE54593.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217] Length = 247 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 10/126 (7%), Positives = 24/126 (19%), Gaps = 12/126 (9%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60 A + A N+ NA+ + R + Sbjct: 5 LYVAMSGAKQNMSALAVRANNLANANTDGFKSDLTQARSMQAFGEGLPSRVFAMTEIATS 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + L + + A++ + L+ N Sbjct: 65 DFKAGALKTTGRDLDIAVKGDGWIAVQ------APDGSEAYTRSGGLKFDNTGLLLNSRN 118 Query: 121 DILGKT 126 + + Sbjct: 119 NPVMGN 124 Score = 43.5 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VN EE+ LI +++ Y + K++ ++ Q ++ Sbjct: 196 QVESGAIEASNVNPVEEMVALISIQRQYEMQVKMMKTAEETDQASSSLMR 245 >gi|117919770|ref|YP_868962.1| flagellar basal body rod protein FlgC [Shewanella sp. ANA-3] gi|117612102|gb|ABK47556.1| flagellar basal-body rod protein FlgC [Shewanella sp. ANA-3] Length = 138 Score = 46.2 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +F+ A + + S + + NI NAD Sbjct: 1 MSLFNIFDVAGSGMSAQSLRLNTTASNIANAD 32 Score = 40.4 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|241203104|ref|YP_002974200.1| flagellar basal body rod protein FlgC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856994|gb|ACS54661.1| flagellar basal-body rod protein FlgC [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 138 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52 L A A + S + + NI NA D Y R+ V Sbjct: 4 LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRTNGVET 63 Query: 53 VTQ 55 V Sbjct: 64 VGV 66 >gi|157961169|ref|YP_001501203.1| flagellar basal body rod protein FlgC [Shewanella pealeana ATCC 700345] gi|157846169|gb|ABV86668.1| flagellar basal-body rod protein FlgC [Shewanella pealeana ATCC 700345] Length = 138 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 13/107 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL +FN A + + S + + NI NA S + T R+ + Sbjct: 1 MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DSVSSSVGETYRARHP 47 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 ++ A Q + ++ + + P Sbjct: 48 IFEAEMSKAQQHQSAAQSVAVKGIVESDLPLNKEFSPDHPMADTDGF 94 Score = 38.5 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTL 134 >gi|332297607|ref|YP_004439529.1| flagellar basal-body rod protein FlgC [Treponema brennaborense DSM 12168] gi|332180710|gb|AEE16398.1| flagellar basal-body rod protein FlgC [Treponema brennaborense DSM 12168] Length = 151 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 11/34 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 M L N A + + I NI NA Sbjct: 1 MGLFTSINIAATGMSVERLRTDVISDNIANASTT 34 Score = 43.9 bits (101), Expect = 0.058, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + Y VN+ E+ LI ++Y ++ +I + M + LE + Sbjct: 104 NAGYVEYPNVNIVNEMVDLISASRAYEANSSVIQGSKDMFSSALEIAR 151 >gi|326319095|ref|YP_004236767.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375931|gb|ADX48200.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp. avenae ATCC 19860] Length = 134 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++F + + + +Q+ + N+ N D Y R + +P Sbjct: 1 MSMFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGDEGAA 60 Query: 55 QRSEN 59 + Sbjct: 61 GVRVS 65 >gi|188581884|ref|YP_001925329.1| flagellar basal body rod protein FlgC [Methylobacterium populi BJ001] gi|179345382|gb|ACB80794.1| flagellar basal-body rod protein FlgC [Methylobacterium populi BJ001] Length = 136 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 13/79 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTI------SP 47 M L A + S + I NI N A Y R+ T + Sbjct: 1 MDFLKSLGIAASGLKAQSGRMRIIAENIANADSAAQTPGGDPYRRKIPTFTNRFDRELNA 60 Query: 48 ENVTVVTQRSENKNMFDKV 66 V R + K Sbjct: 61 SVVEAGRVRRDPTPFRTKY 79 >gi|221069324|ref|ZP_03545429.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni KF-1] gi|264676568|ref|YP_003276474.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni CNB-2] gi|299531288|ref|ZP_07044698.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni S44] gi|220714347|gb|EED69715.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni KF-1] gi|262207080|gb|ACY31178.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni CNB-2] gi|298720695|gb|EFI61642.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni S44] Length = 134 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MS+ ++FN + + + SQ+ + N+ N D Y R + P Sbjct: 1 MSMFSIFNISGSAVSAQSQRLNVVASNLANVDAVAGPDGSVYKARQVVFQTVPMGNDGSA 60 >gi|253990129|ref|YP_003041485.1| flagellar basal body rod protein FlgC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639034|emb|CAR67648.1| flagellar basal-body rod protein flgc (putative proximal rod protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781579|emb|CAQ84742.1| flagellar basal-body rod protein flgc (putative proximal rod protein) [Photorhabdus asymbiotica] Length = 134 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMT-TISPENVTVV 53 MSLL+VF+ A + + SQ+ N+ NAD+ Y + + +P Sbjct: 1 MSLLSVFDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETG 60 Query: 54 TQRSE 58 R Sbjct: 61 GVRVS 65 >gi|116872071|ref|YP_848852.1| flagellar basal body rod protein FlgG [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740949|emb|CAK20069.1| flagellar basal-body rod protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 259 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 44/218 (20%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R SP V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVARQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFLTAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + + + AD ++ + + Sbjct: 123 QFGFLRTSDGANVLSATGEAIQVGQKTSIRAEANGDLFNADTNQYLGRIGTKFVSADQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + + + E + Sbjct: 183 SLVKDGEGRLHVNGINTINLPAGQGNIQNGVLETSNVD 220 Score = 37.3 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 32/122 (26%) Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 G+ + + + I T + A + + Sbjct: 129 TSDGANVLSATGEAIQVGQKTSIRAEANGDLFNADTNQYLGRIGTKFVSADQADSLVKDG 188 Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 E + + +I T V+L E+ L+ ++ S ++ DK+ Sbjct: 189 EGRLHVNGINTINLPAGQGNIQNGVLETSNVDLGIEMVQLMDNQRMVQASKNVVNMFDKV 248 Query: 472 LQ 473 Sbjct: 249 YD 250 >gi|315648139|ref|ZP_07901240.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453] gi|315276785|gb|EFU40128.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453] Length = 149 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M++ F + + I NI NA+ R + + Sbjct: 1 MNISNSFGINASALTAQRLRMDVISSNIANAET---TRARIENGQAVPYRRKTVVFQPQQ 57 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM 89 F+ +L A S + ++ ++ Sbjct: 58 ESFEGLLRAQMSGQDAGQGVKVAAVQEDQ 86 >gi|229096230|ref|ZP_04227203.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-29] gi|229102343|ref|ZP_04233051.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-28] gi|229115185|ref|ZP_04244595.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-3] gi|228668325|gb|EEL23757.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-3] gi|228680990|gb|EEL35159.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-28] gi|228687190|gb|EEL41095.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-29] Length = 137 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAMNASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|300870978|ref|YP_003785849.1| flagellar basal body rod protein FlgB [Brachyspira pilosicoli 95/1000] gi|300688677|gb|ADK31348.1| flagellar basal body rod protein, FlgB [Brachyspira pilosicoli 95/1000] Length = 142 Score = 46.2 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 6/50 (12%) Query: 1 MSLLA------VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44 MS+ A A+ + N + I NI N N+ R D Sbjct: 1 MSMFADTTYAKTMTIAKKLLNVYGLRAEVIADNIANVSTPNFKRSDVTFE 50 >gi|320354315|ref|YP_004195654.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus DSM 2032] gi|320122817|gb|ADW18363.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus DSM 2032] Length = 145 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45 M + F+ A + + + +I N+ N++ + Y ++ + Sbjct: 1 MDIFTTFDIAASGLKAQTMRLNTISANLANSETTSTPEGGPYKKKSVVFQT 51 >gi|237653585|ref|YP_002889899.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T] gi|237624832|gb|ACR01522.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T] Length = 134 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y VN+ EE+ +I +SY + +++ +LQ L+ Sbjct: 88 DGYVEMPNVNVVEEMVNMISASRSYQNNAEVMSTARTLLQRTLQI 132 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54 MS+L VF A + N S + + N+ NAD+ Y + + P Sbjct: 1 MSMLNVFQIAGSALNAQSLRLNATASNLANADSVISEDGQPYRAKQVVFAARPVAGPAAV 60 Query: 55 QRSENK 60 + Sbjct: 61 GVQVTQ 66 >gi|323703166|ref|ZP_08114819.1| flagellar basal-body rod protein FlgB [Desulfotomaculum nigrificans DSM 574] gi|323531825|gb|EGB21711.1| flagellar basal-body rod protein FlgB [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%) Query: 1 MSLLAV--FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 M + FN Q + ++ + I N+ N + + + Sbjct: 1 MDIFNSPMFNLLQRGLDASALRQRVIANNVANLNTPGFKKSYVSFEE 47 >gi|114797235|ref|YP_759001.1| flagellar basal-body rod protein [Hyphomonas neptunium ATCC 15444] gi|114737409|gb|ABI75534.1| flagellar basal-body rod protein [Hyphomonas neptunium ATCC 15444] Length = 128 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 2/59 (3%) Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRR--DTMTTISPENVTVVTQRSENKNMFDKV 66 A S++ NI NAD Y R+ + + R + K Sbjct: 11 AVAGMELQSRRMGVTAENISNADTPGYKRKLLMVEQSQLSSGEQFMASRVQLDEAEAKR 69 >gi|218506433|ref|ZP_03504311.1| flagellar basal body rod protein FlgC [Rhizobium etli Brasil 5] Length = 102 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTIS---PENVTV 52 L A A + S + + NI NA D Y R+ V Sbjct: 4 LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDHVSGVET 63 Query: 53 VTQ 55 V Sbjct: 64 VNV 66 >gi|229542504|ref|ZP_04431564.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] gi|229326924|gb|EEN92599.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] Length = 262 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 25/262 (9%), Positives = 54/262 (20%), Gaps = 25/262 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVTVV 53 +L A + ++ + N+ NAD Y + P T Sbjct: 1 MLRGLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGE 60 Query: 54 TQRSENK------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 +S L + Q+ DD + Sbjct: 61 VVKSVGSLATGVYMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVY 120 Query: 102 HYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 + E Y S +L + +A V + A Sbjct: 121 TRNGNFTVNPEGYLTTASGHYVLDENGGRIRTGGTDFSVDAAGAVTENGRYAGTIGLAYA 180 Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220 N + + + F ++ L S + + + + Sbjct: 181 QNPAQLEKTGDGLYTLANNGALPAAGQNGFQIKQGFLE---SSNVDETKTMTDMMSAYRS 237 Query: 221 TSDGTTLFETVPRDINFEKMNS 242 + + + + Sbjct: 238 FEANQKVLQAYDASLGKAVNDV 259 Score = 40.0 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 24/257 (9%), Positives = 59/257 (22%), Gaps = 5/257 (1%) Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285 L T +N D ++Q S K+ ++ Sbjct: 1 MLRGLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGE 60 Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345 + +A + + G+ E + + Sbjct: 61 VVKSVGSLATGVYMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVY 120 Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 + L I F+ + T+ Sbjct: 121 TRNGNFTVNPEGYLTTASGHYVLDENGGRIRTGGTDFSVDAAGAVTENGRYAGTIGLAYA 180 Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFN-----HISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + LEK + L + I + + + V+ + ++ ++ +S+ Sbjct: 181 QNPAQLEKTGDGLYTLANNGALPAAGQNGFQIKQGFLESSNVDETKTMTDMMSAYRSFEA 240 Query: 461 SNKLIMFTDKMLQTLLE 477 + K++ D L + Sbjct: 241 NQKVLQAYDASLGKAVN 257 >gi|78043872|ref|YP_359837.1| flagellar basal-body rod protein FlgB [Carboxydothermus hydrogenoformans Z-2901] gi|77995987|gb|ABB14886.1| flagellar basal-body rod protein FlgB [Carboxydothermus hydrogenoformans Z-2901] Length = 136 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 6/33 (18%), Positives = 13/33 (39%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 + A+ + +I NI N + Y + + Sbjct: 15 GIDAATIRQQAIAHNIANVNTPGYRKEVVVFEE 47 >gi|302342345|ref|YP_003806874.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM 2075] gi|301638958|gb|ADK84280.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM 2075] Length = 147 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 M + + + + + I +N+ NA+ + Y RR T+ + P Sbjct: 1 MDFVTSMEISASGLSAQRTRLNIISQNLANAETTRTAEGGPYRRRVTVMSAQP 53 >gi|190890357|ref|YP_001976899.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695636|gb|ACE89721.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 244 Score = 46.2 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 10/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61 + + + + ++ +I N+ N + + + + + Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + L+ + + + F + + D + ++ Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRGY 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + + + D I + ++ Sbjct: 121 PILDAG--------GAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYE 172 Query: 182 ASKHDAHD 189 S D Sbjct: 173 NSGIMTTD 180 >gi|209545588|ref|YP_002277817.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533265|gb|ACI53202.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] Length = 247 Score = 46.2 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 43/190 (22%), Gaps = 16/190 (8%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSE 58 A + + S+ N+ NA+ + + + + Sbjct: 6 YIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEEVYTQD 65 Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118 D++ A+ Q L F E A + + + Sbjct: 66 RSTYQDRL----QGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVDG 121 Query: 119 SEDILGKTVIDNAEEVVQNFN---TSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175 S + L +N ++ S + + + N + E + Sbjct: 122 SGNPLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYLLR 181 Query: 176 AIKFKTASKH 185 + Sbjct: 182 PTTPTRNVAN 191 >gi|192290682|ref|YP_001991287.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] gi|192284431|gb|ACF00812.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] Length = 244 Score = 46.2 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 32/139 (23%), Gaps = 4/139 (2%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENKNMFD 64 + QQ ++ RN+ N + + R T + E + + + Sbjct: 7 IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAVT 66 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + ++ L++ + LS D++ Sbjct: 67 GYTDFSAGSLQLTGNSTDAAVLEDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLVL 126 Query: 125 KTVIDNAEEVVQNFNTSAR 143 + + Sbjct: 127 AANGTIKVPLTDLNLSIGT 145 >gi|303326604|ref|ZP_07357046.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp. 3_1_syn3] gi|302862592|gb|EFL85524.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp. 3_1_syn3] Length = 146 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46 M L + + + +I N+ NA Y RR + + Sbjct: 1 MDFLTALDIGASGLTADRTRINTISMNLANAKTTRTPQGGPYRRRTVVQAAT 52 >gi|301608667|ref|XP_002933905.1| PREDICTED: calmodulin-binding transcription activator 1-like [Xenopus (Silurana) tropicalis] Length = 1698 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 27/358 (7%), Positives = 83/358 (23%), Gaps = 17/358 (4%) Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLSELTV 172 S ++ ++ + + + + + AD +S++ + Sbjct: 304 LLHQNSTEVSSTNQVEVPDTTQNSPVSISSGLNSDPDMADSPAVTGVSSMAVASVMGSLS 363 Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS-----TIVRNNNDMVVYTSDGTTL 227 N + + + +S + T +L Sbjct: 364 QNATVFMSEVTNEAVYSMSPNTGPNQHLLSSDTSAQGLVLAVSSDGHKFAFPTTGSSDSL 423 Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287 +++ +S P + D++ + Sbjct: 424 SMLSANVAEELVLSTTLDSSRKIPETAMNFDPDCFLNNPKQGQTYGGGGLKEDNICSNMR 483 Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347 + K+ ++ L N L ++ + S Sbjct: 484 RSSSTDRSFGFNAVLAKEIKTEDTSFEQQLAKESFPSTSSNTLTLTPGSSLLPSGGGLSP 543 Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----GINTNVTLLE 402 + L + + + H + + +F + N++ +L + Sbjct: 544 STTLEQMDFSAIDSNKDYTTSFNHAVQSPHVHQTPSPSFFLQDASKPIPLDQNSHNSLND 603 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + LE + + I ++ +L L++ + +Y Sbjct: 604 TNSTYVNTLEIPNVKTEVSSQTASNCNGTIDQARIE-STSSL-----QLMQFQANYQA 655 >gi|167623359|ref|YP_001673653.1| flagellar basal body rod protein FlgC [Shewanella halifaxensis HAW-EB4] gi|167353381|gb|ABZ75994.1| flagellar basal-body rod protein FlgC [Shewanella halifaxensis HAW-EB4] Length = 138 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 13/107 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL +FN A + + S + + NI NA S + T R+ + Sbjct: 1 MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DSVSSSVGETYRARHP 47 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 ++ A + ++ + + P Sbjct: 48 IFEAEMSKAQQHQSASASVAVKGIVESDLPLNKEFSPDHPMADTDGF 94 Score = 38.1 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTL 134 >gi|218781795|ref|YP_002433113.1| hypothetical protein Dalk_3959 [Desulfatibacillum alkenivorans AK-01] gi|218763179|gb|ACL05645.1| Putative flagellar basal body rod protein [Desulfatibacillum alkenivorans AK-01] Length = 117 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61 ++A N + + N ++F S N N D Y + + + V +++ + + Sbjct: 1 MIAGINASVSALNAYGRKFQSTANNTANIDTDGYKKTRVTMSEAANGSVEAKSEKVNSPS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102 L + S + ++ + + + + A Y + Sbjct: 61 PIVSELTSEGSVLVEKSNVDLAQEVTNQILAARGYEANLAS 101 >gi|229166627|ref|ZP_04294379.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] gi|228616881|gb|EEK73954.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] Length = 259 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 22/226 (9%), Positives = 49/226 (21%), Gaps = 19/226 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTT 44 MS+ N Q N+ NA + R D T Sbjct: 1 MSMNG-LYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMT 59 Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 V + + N+ + +S L A + + Sbjct: 60 NIGSVDYAVVPAATHVNLVQGNIQMTNSPTDF--FLDDGAAGTSSFFVTSKNDETFLTRD 117 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 + + Y + S + + + I + Sbjct: 118 GSFTLNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTV 177 Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + +V K ++ + D + ++ + E + Sbjct: 178 DTETNARLVQRENKSFILAEGNIADLPNGTGIVKNHMLENSNVDMT 223 Score = 38.5 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 20/47 (42%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 + V++ +E++ L+ ++ S +++ DK+ + Sbjct: 205 NGTGIVKNHMLENSNVDMTKEMADLMTNQKMIQASQRIMTSFDKIYE 251 >gi|319403959|emb|CBI77547.1| Flagellar basal-body rod protein flgC [Bartonella rochalimae ATCC BAA-1498] Length = 138 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 1 MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS----- 46 MS L+A A + S + I N+ NA++ Y R+ + Sbjct: 1 MSDRLIAAEQIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYL 60 Query: 47 -PENVTVVTQRSENKNMFDKV 66 + V V ++ + Sbjct: 61 DAQGVHVTRISTDKAPFIMRY 81 >gi|312115282|ref|YP_004012878.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] gi|311220411|gb|ADP71779.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 9/129 (6%), Positives = 34/129 (26%), Gaps = 5/129 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 + + A + ++ ++ +N+ NA+ Y + Sbjct: 1 MQSSLYVALSAQVALQKRLDTVAQNVANANTVGYRGTEMKFDSVLSAADAQMTAFVTSKD 60 Query: 61 ---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117 ++ L + + Q + +++ + S + S+ + Sbjct: 61 GVVSLGAGGLIKTGNPLDVALKGQGWLSVQAPAGRMYTRDGRIQLTTSGMLVSMRGHPVL 120 Query: 118 LSEDILGKT 126 + + Sbjct: 121 DAGGAPMQV 129 >gi|288573036|ref|ZP_06391393.1| flagellar basal-body rod protein FlgB [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568777|gb|EFC90334.1| flagellar basal-body rod protein FlgB [Dethiosulfovibrio peptidovorans DSM 11002] Length = 131 Score = 45.8 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 24 IVRNIENADNKNYVRRDTMTTI 45 + +N+ NA+ Y RR+ Sbjct: 23 VGQNLANANTPGYARREVSFED 44 >gi|57242334|ref|ZP_00370273.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis RM3195] gi|315638445|ref|ZP_07893622.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis JV21] gi|57017014|gb|EAL53796.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis RM3195] gi|315481436|gb|EFU72063.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis JV21] Length = 164 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA + Y RR+ + + Sbjct: 1 MAYLSDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRREVIFKAN-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ ++ ++ + + L Sbjct: 53 ---DFDALINQQINKDNNFLKYENPLND 77 >gi|226223313|ref|YP_002757420.1| flagellar hook-basal body protein FlgG [Listeria monocytogenes Clip81459] gi|225875775|emb|CAS04478.1| Putative flagellar hook-basal body protein FlgG [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 259 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRIHVNGINTMNLPAGQGIIQNGVIETSNVD 220 >gi|251772413|gb|EES52980.1| flagellar basal body rod protein [Leptospirillum ferrodiazotrophum] Length = 265 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 7/148 (4%), Positives = 23/148 (15%), Gaps = 39/148 (26%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45 + Q + N+ N + + + M Sbjct: 9 VSGAQGQEQMMDVLSSNLANVNTPGFRKDRVMFRSYLPHREYLHRTPPDRPGFNLTPFGT 68 Query: 46 -----SPENVTV--VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 + + + + + + F ++ Sbjct: 69 FPTPWGMAGSDIPHSGVDRIYVRYEEGEFQSTGNPLDVALSGKGFLTVR-------TPGG 121 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKT 126 + L + L Sbjct: 122 TLLTRNGHLTVDSQGRLTTHEGHPLVGV 149 >gi|304321145|ref|YP_003854788.1| putative flagellar basal-body rod protein FlgC [Parvularcula bermudensis HTCC2503] gi|303300047|gb|ADM09646.1| putative flagellar basal-body rod protein FlgC [Parvularcula bermudensis HTCC2503] Length = 127 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 17/44 (38%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 LL A + N S + ++ N+ N D Y R+ + Sbjct: 5 LLTSLRIAGDGMNAQSFRMRTVNENLSNIDTPGYQRKMLTFSTG 48 >gi|212709490|ref|ZP_03317618.1| hypothetical protein PROVALCAL_00532 [Providencia alcalifaciens DSM 30120] gi|212687828|gb|EEB47356.1| hypothetical protein PROVALCAL_00532 [Providencia alcalifaciens DSM 30120] Length = 134 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54 M LL++F+ + + SQ+ N+ NA Y + + ++P+ V Sbjct: 1 MGLLSIFDISSSALTAQSQRLNVSASNMANAESVVGPDGEPYRAKQVVFQMAPQGRNQVG 60 Query: 55 QRSENKNMFD 64 ++ + D Sbjct: 61 GVRVSELIDD 70 Score = 38.1 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 V+ E+ I +SY + +++ +LQ L Sbjct: 95 NVDTVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130 >gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] gi|254040057|gb|ACT56853.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 7/60 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55 L+A + A + S + I NI NA Y R+ V Sbjct: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV 63 >gi|212634349|ref|YP_002310874.1| flagellar basal body rod protein FlgF [Shewanella piezotolerans WP3] gi|212555833|gb|ACJ28287.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 247 Score = 45.8 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 12/129 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + A N+ NA+ + R Sbjct: 1 MDKLLYVAMSGAKQNMNSLAISANNLANANTDGFKADLAQARSMQAFGEGLPTRVFAMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 S + + + + + + A++ L + Sbjct: 61 SPSADFTNGPIKTTGRDLDIAVKGDGWIAVQ------ADDGGEAYTRSGSLSFDTTGVLR 114 Query: 117 NLSEDILGK 125 N L Sbjct: 115 NDKGTPLMG 123 >gi|326791546|ref|YP_004309367.1| flagellar basal-body rod protein FlgB [Clostridium lentocellum DSM 5427] gi|326542310|gb|ADZ84169.1| flagellar basal-body rod protein FlgB [Clostridium lentocellum DSM 5427] Length = 122 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 M++ + + + + I NI N D Y R+D Sbjct: 1 MNIFSDIDLMNTAISATMLRKGIISENISNVDTPGYKRKDVRFET 45 >gi|218230982|ref|YP_002366429.1| flagellar basal body rod protein FlgC [Bacillus cereus B4264] gi|218158939|gb|ACK58931.1| flagellar basal-body rod protein FlgC [Bacillus cereus B4264] Length = 137 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|47091645|ref|ZP_00229441.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 4b H7858] gi|254824038|ref|ZP_05229039.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-194] gi|254932038|ref|ZP_05265397.1| flagellar basal body rod protein FlgG [Listeria monocytogenes HPB2262] gi|47019964|gb|EAL10701.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 4b H7858] gi|293583591|gb|EFF95623.1| flagellar basal body rod protein FlgG [Listeria monocytogenes HPB2262] gi|293593267|gb|EFG01028.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-194] gi|328467251|gb|EGF38331.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 1816] gi|328475645|gb|EGF46394.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 220] gi|332311107|gb|EGJ24202.1| Flagellar basal body rod protein [Listeria monocytogenes str. Scott A] Length = 259 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220 >gi|209547922|ref|YP_002279839.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533678|gb|ACI53613.1| flagellar basal body rod protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 37/150 (24%), Gaps = 8/150 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + + + + ++ +I N+ N + + + N V Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 57 SENKNM--FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 N + + L + + ++ +L + T + S+ Y Sbjct: 61 QGNDYLNESNGELQHTGNMLDFAIKGDAWFSLDTPAGRVLTRDGRFTLKDTGELVSIRGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144 + + E V + Sbjct: 121 PVLDAGGAPIQLNSKGGEPAVGTDGIIYQG 150 >gi|127512277|ref|YP_001093474.1| flagellar basal body rod protein FlgC [Shewanella loihica PV-4] gi|126637572|gb|ABO23215.1| flagellar basal-body rod protein FlgC [Shewanella loihica PV-4] Length = 139 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN A + + S + + NI NAD Sbjct: 1 MSLFNIFNVAGSGMSAQSVRLNTTASNIANAD 32 Score = 37.3 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVADAAKSMLQQTL 134 >gi|167639076|ref|ZP_02397349.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0193] gi|177650375|ref|ZP_02933342.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0174] gi|254734585|ref|ZP_05192297.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Western North America USA6153] gi|167512866|gb|EDR88239.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0193] gi|172083519|gb|EDT68579.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0174] Length = 137 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|120598230|ref|YP_962804.1| flagellar basal body rod protein FlgC [Shewanella sp. W3-18-1] gi|146293692|ref|YP_001184116.1| flagellar basal body rod protein FlgC [Shewanella putrefaciens CN-32] gi|120558323|gb|ABM24250.1| flagellar basal-body rod protein FlgC [Shewanella sp. W3-18-1] gi|145565382|gb|ABP76317.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens CN-32] gi|319427091|gb|ADV55165.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens 200] Length = 138 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL ++F+ A + + S + + NI NAD Sbjct: 1 MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32 Score = 38.9 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|319406974|emb|CBI80611.1| Flagellar basal-body rod protein flgC [Bartonella sp. 1-1C] Length = 138 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 1 MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS----- 46 MS L+A A + S + I N+ NA++ Y R+ + Sbjct: 1 MSDRLIAAEQIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYI 60 Query: 47 -PENVTVVTQRSENKNMFDKV 66 + V V ++ + Sbjct: 61 DAQGVHVTRISTDKAPFIMRY 81 >gi|325111114|ref|YP_004272182.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324971382|gb|ADY62160.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 256 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54 +L ++ + S + I NI NA+ ++ R + + P+ + Sbjct: 1 MLYGLYQSATGADLQSLRQDVISNNIANANTSSFKRDLAIFAVRPQQAELDGDLDDVPPP 60 Query: 55 ---------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + L +A L + F + + + S T Sbjct: 61 LQGHPGAAVVAETVTDFAQGPLQETGAAFDIALLGKGFFRVSDGQEELLSRSGSLT 116 Score = 36.9 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + + + GV E+ +I+ +++ + LI D L LL+ V Sbjct: 206 VRQGFLEQSGVRPITEMLAMIESSRAFEANMNLIQNQDNTLGQLLQAV 253 >gi|160901818|ref|YP_001567399.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] gi|160359462|gb|ABX31076.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] Length = 240 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 20/210 (9%), Positives = 54/210 (25%), Gaps = 16/210 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVR------------RDTMTTISPENVTVV 53 A N+ + SI N+ N + Y + + + + Sbjct: 3 GIYNATAGMLNSFAELNSISNNLANLNTVGYKKDFNLFKSVYEKEIRSYQNAQGKGEPIG 62 Query: 54 TQRSENKNMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112 + + D+V+ + + + F + + N + S E Sbjct: 63 NI--YSSVVLDEVIPNLEQGPLVETSGKLDFAIEGDGFFKIERNGNYFYTRNGEFSLSPE 120 Query: 113 SYSKN-LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171 +Y + +L + ++ F + + ++ Sbjct: 121 NYLVTKSGDYVLDEENNPILVDLDNFFVDEEGNISGTNTRLNILNVENLNKYGENYFTGE 180 Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201 + A F +D + +++ I Sbjct: 181 ELGQAGNFNMRQGFLESSNVDALNEMIKMI 210 >gi|260438810|ref|ZP_05792626.1| flagellar basal-body rod protein FlgC [Butyrivibrio crossotus DSM 2876] gi|292808799|gb|EFF68004.1| flagellar basal-body rod protein FlgC [Butyrivibrio crossotus DSM 2876] Length = 145 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 M++ + N A + + I NI NA+ + Y RR+ + T Sbjct: 1 MAIFSGMNIAASGMTAQRLRTDIISGNIANANTTRTAEGGPYTRRNVLLTQ 51 >gi|229172391|ref|ZP_04299950.1| Flagellar basal-body rod protein FlgC [Bacillus cereus MM3] gi|228610862|gb|EEK68125.1| Flagellar basal-body rod protein FlgC [Bacillus cereus MM3] Length = 137 Score = 45.8 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|217965220|ref|YP_002350898.1| flagellar basal body rod protein [Listeria monocytogenes HCC23] gi|290893977|ref|ZP_06556952.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-071] gi|217334490|gb|ACK40284.1| flagellar basal body rod protein [Listeria monocytogenes HCC23] gi|290556423|gb|EFD89962.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-071] gi|307570221|emb|CAR83400.1| flagellar basal-body rod protein, putative [Listeria monocytogenes L99] Length = 259 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220 >gi|121596118|ref|YP_988014.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|222112273|ref|YP_002554537.1| flagellar basal-body rod protein flgf [Acidovorax ebreus TPSY] gi|120608198|gb|ABM43938.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|221731717|gb|ACM34537.1| flagellar basal-body rod protein FlgF [Acidovorax ebreus TPSY] Length = 246 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 30/141 (21%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + N A+ + A + N+ NA + + P T R Sbjct: 1 MDRIIYTSMTGANAAAHRQAVLANNLANASTTGFRAEMSNFRSVPLQGGGSTTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + A R L + + + + + Sbjct: 61 TSGHVDTPGPAQTTGRPLDAMAVGNAWFAVQGLDGVETYTRAGSFQVTAAGQLVTSTGMA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + + T Sbjct: 121 VLSDGGAPIDVPPNAEVTLGA 141 >gi|160896078|ref|YP_001561660.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] gi|160361662|gb|ABX33275.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] Length = 246 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 14/141 (9%), Positives = 34/141 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + N A+Q+ + + N+ NA + + P + R Sbjct: 1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + R L + + + S E N + Sbjct: 61 TSGYVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + + ++ T Sbjct: 121 VLSDGGGPIDIPPESTITLGS 141 >gi|226939376|ref|YP_002794449.1| FlgC1 [Laribacter hongkongensis HLHK9] gi|226714302|gb|ACO73440.1| FlgC1 [Laribacter hongkongensis HLHK9] Length = 137 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTT 44 MSL V + A + S++ + NI N D+ + Y R + T Sbjct: 1 MSLNRVLDIAGSALTAQSKRLNVVASNIANVDSAVASNGEPYKARRIVFT 50 Score = 38.1 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 19/33 (57%) Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 EE++ +I ++Y + +++ T ++LQ L Sbjct: 102 EEMTDMISASRAYQTNVEMMNTTKQLLQKTLSI 134 >gi|118474276|ref|YP_891712.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] gi|118413502|gb|ABK81922.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] Length = 270 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 14/177 (7%), Positives = 36/177 (20%), Gaps = 26/177 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 + + +A + I N+ N + Y R D + Sbjct: 1 MQNGYYQATGAMVTQFNRLDVITNNLANVNTIGYKRDDVVIADFERIFKETRDILPLENH 60 Query: 46 --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97 + V + L ++ + L + + Sbjct: 61 TRDAAKFLNRTIDRVPQINEIYTDFNVGGLKMTNNPLDVAIGKSDLFLLVDTPNGVRLTK 120 Query: 98 NS-PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 N + E Y + + + T ++ + + Sbjct: 121 NGALNLDNEGYIVTKEGYRVLPNNYENQPEEVRGIQIPQDAPVTIDKDGNIYSNNEN 177 >gi|254419217|ref|ZP_05032941.1| flagellar basal-body rod protein FlgC [Brevundimonas sp. BAL3] gi|196185394|gb|EDX80370.1| flagellar basal-body rod protein FlgC [Brevundimonas sp. BAL3] Length = 128 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 11/67 (16%) Query: 7 FNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI----SPENVTVVTQ 55 A + + I NI NA Y R+ + VT+ Sbjct: 1 MAVAASALKAQQSRMRVIAENIANAQSTARTPGGEPYRRQIPVFQAREVDGATGVTLAEV 60 Query: 56 RSENKNM 62 R + Sbjct: 61 RPDQGEF 67 Score = 36.5 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 17/40 (42%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V+ E + + +++Y + +I M L+ +K Sbjct: 88 NVDTLVEAMDMREAQRAYEANLNVIETARSMDSRTLDIIK 127 >gi|121601652|ref|YP_989405.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] gi|120613829|gb|ABM44430.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] Length = 244 Score = 45.8 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/206 (6%), Positives = 46/206 (22%), Gaps = 1/206 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61 + + + +++ +I +N+ N + + R + Sbjct: 1 MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPIAQEQGDRVFFTS 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + ++ Q A + + ++ + E +++ Sbjct: 61 AGKGYISTERGSLEQTGNALDVAATGNSYFSMEASFGVVYTRDGRMTMTPEGMLVSVTGL 120 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181 + I + + + N ++ Sbjct: 121 PFLDDGGAPIQLNPVGGAPRIGADGSIYQGNVLAGRIGLYQFQPGTQLRYGPNASVIPDR 180 Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGI 207 A+ D + S + G+ Sbjct: 181 AAIQIEGGTGDGVMQGYVESSNVNGV 206 >gi|75761144|ref|ZP_00741136.1| Flagellar basal-body rod protein flgC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206970905|ref|ZP_03231857.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH1134] gi|218896677|ref|YP_002445088.1| flagellar basal-body rod protein FlgC [Bacillus cereus G9842] gi|228900326|ref|ZP_04064556.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL 4222] gi|228920455|ref|ZP_04083800.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952124|ref|ZP_04114219.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958024|ref|ZP_04119760.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pakistani str. T13001] gi|229069296|ref|ZP_04202586.1| Flagellar basal-body rod protein FlgC [Bacillus cereus F65185] gi|229078926|ref|ZP_04211478.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock4-2] gi|229109201|ref|ZP_04238800.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-15] gi|229127070|ref|ZP_04256069.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-Cer4] gi|229149946|ref|ZP_04278174.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1550] gi|229178153|ref|ZP_04305524.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 172560W] gi|229189841|ref|ZP_04316852.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 10876] gi|74491372|gb|EAO54596.1| Flagellar basal-body rod protein flgC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206734541|gb|EDZ51711.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH1134] gi|218541427|gb|ACK93821.1| flagellar basal-body rod protein FlgC [Bacillus cereus G9842] gi|228593649|gb|EEK51457.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 10876] gi|228605283|gb|EEK62733.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 172560W] gi|228633627|gb|EEK90228.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1550] gi|228656423|gb|EEL12262.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-Cer4] gi|228674211|gb|EEL29456.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-15] gi|228704340|gb|EEL56774.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock4-2] gi|228713783|gb|EEL65668.1| Flagellar basal-body rod protein FlgC [Bacillus cereus F65185] gi|228801649|gb|EEM48530.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807656|gb|EEM54180.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839085|gb|EEM84381.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228859361|gb|EEN03791.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL 4222] Length = 137 Score = 45.8 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|239834444|ref|ZP_04682772.1| flagellar basal-body rod protein FlgC [Ochrobactrum intermedium LMG 3301] gi|239822507|gb|EEQ94076.1| flagellar basal-body rod protein FlgC [Ochrobactrum intermedium LMG 3301] Length = 140 Score = 45.8 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49 MS L + A + + S + + NI NA + Y R+ T + Sbjct: 1 MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTAKTADADPYRRKTVSFRTELEQG 60 Query: 50 VTVVTQR 56 R Sbjct: 61 TGAAEVR 67 >gi|224498764|ref|ZP_03667113.1| flagellar basal body rod protein FlgG [Listeria monocytogenes Finland 1988] Length = 259 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 44/218 (20%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L T + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSTTGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220 >gi|34557980|ref|NP_907795.1| flagellar basal body rod protein FlgC [Wolinella succinogenes DSM 1740] gi|34483698|emb|CAE10695.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGC PROXIMAL ROD PROTEIN [Wolinella succinogenes] Length = 164 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 17/88 (19%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M+ L+ F+ + + + I NI NA+ + Y R++ + Sbjct: 1 MAFLSSFDISGYGLSAQRFRVNMISSNIANANTTRTDEGGPYRRKEVIFKAF-------- 52 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82 + + ++ L +++ + + L Sbjct: 53 ---DFDEVLNQKLGENNNLLKYEDPLDE 77 >gi|152975156|ref|YP_001374673.1| flagellar basal body rod protein FlgC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023908|gb|ABS21678.1| flagellar basal-body rod protein FlgC [Bacillus cytotoxicus NVH 391-98] Length = 137 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ + Y RR + + Sbjct: 1 MFQAINASGSGLTAARKWMEVSSDNIVNANTTSAPDGEPYRRRSVVLESN 50 >gi|313624924|gb|EFR94832.1| flagellar basal body rod protein FlgG [Listeria innocua FSL J1-023] Length = 259 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 44/218 (20%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R SP V T Sbjct: 3 GLYIGAAGMMNYMQYIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVAKQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQFHTD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + + + + + + + A+ ++ + + Sbjct: 123 QFGFLRTADGANILSSTGEAIQVGQKTAIRAEANGDLYNAETNQYLGRLGTKFVSANQVD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 +V D + + + + + + E + Sbjct: 183 NLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVD 220 Score = 37.3 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473 +I T V+L E+ L+ ++ S ++ DK+ Sbjct: 204 AGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQASKNVVNMFDKVYD 250 >gi|47566127|ref|ZP_00237165.1| flagellar basal-body rod protein flgC [Bacillus cereus G9241] gi|206974761|ref|ZP_03235676.1| flagellar basal-body rod protein FlgC [Bacillus cereus H3081.97] gi|217959228|ref|YP_002337776.1| flagellar basal body rod protein FlgC [Bacillus cereus AH187] gi|229138444|ref|ZP_04267033.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST26] gi|47557044|gb|EAL15374.1| flagellar basal-body rod protein flgC [Bacillus cereus G9241] gi|206746780|gb|EDZ58172.1| flagellar basal-body rod protein FlgC [Bacillus cereus H3081.97] gi|217065314|gb|ACJ79564.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH187] gi|228644981|gb|EEL01224.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST26] Length = 137 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 Score = 37.3 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E++ ++ ++ Y + ++ KML LE + Sbjct: 97 NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136 >gi|312962590|ref|ZP_07777080.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens WH6] gi|311283170|gb|EFQ61761.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens WH6] Length = 147 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL +VFN A + + + + ++ NI NA+ + Y R + + Sbjct: 1 MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQAGQNGG 60 Query: 55 QRSENKN 61 S + Sbjct: 61 SDSLFQE 67 Score = 39.6 bits (90), Expect = 1.00, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +S+ + +++ M+Q +L Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143 >gi|253997380|ref|YP_003049444.1| flagellar basal body rod protein [Methylotenera mobilis JLW8] gi|253984059|gb|ACT48917.1| flagellar basal body rod protein [Methylotenera mobilis JLW8] Length = 99 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 8 NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51 + + N A + NI N N+ R++ + P T Sbjct: 4 SIPLSGMNAAQARLDVAANNIANLSTDNFTRKEVVQADLPGGGT 47 >gi|16802724|ref|NP_464209.1| flagellar basal body rod protein FlgG [Listeria monocytogenes EGD-e] gi|224502013|ref|ZP_03670320.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL R2-561] gi|16410071|emb|CAC98760.1| lmo0682 [Listeria monocytogenes EGD-e] Length = 259 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220 >gi|47095247|ref|ZP_00232858.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|254829339|ref|ZP_05234026.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL N3-165] gi|254830327|ref|ZP_05234982.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 10403S] gi|254900082|ref|ZP_05260006.1| flagellar basal body rod protein FlgG [Listeria monocytogenes J0161] gi|254911365|ref|ZP_05261377.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935692|ref|ZP_05267389.1| flagellar basal body rod protein FlgG [Listeria monocytogenes F6900] gi|255026599|ref|ZP_05298585.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-003] gi|284801012|ref|YP_003412877.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5578] gi|284994154|ref|YP_003415922.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5923] gi|47016318|gb|EAL07240.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|258601751|gb|EEW15076.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL N3-165] gi|258608274|gb|EEW20882.1| flagellar basal body rod protein FlgG [Listeria monocytogenes F6900] gi|284056574|gb|ADB67515.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5578] gi|284059621|gb|ADB70560.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5923] gi|293589301|gb|EFF97635.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 259 Score = 45.4 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220 >gi|305432071|ref|ZP_07401238.1| flagellin family protein [Campylobacter coli JV20] gi|304445155|gb|EFM37801.1| flagellin family protein [Campylobacter coli JV20] Length = 754 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 36/353 (10%), Positives = 103/353 (29%), Gaps = 3/353 (0%) Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D + +K + I + ++ T +++ + + + Sbjct: 405 MTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMARDSLNDTT 464 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + ++ + ++ + ST+ +N + N T Sbjct: 465 LNLKVNSKGGNSYDVAINLQTSTVSYLDNLGQTISFPIMHTNPATGNSGVVTGSNDITYG 524 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 ++ I + G+I + + +++ G S D Sbjct: 525 QINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDK 584 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 ++ + L + + + N + +N S D +V + Sbjct: 585 LSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSM 644 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426 A + +S N A + L ++ + + ++ ++ Sbjct: 645 IDAVLKGNMRADSESENPRNTGMQGALERLDH-LADHVSKLNTTMGAYHNTIEGVNTRTS 703 Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ SN + V+ E + L++ + +Y S K ++ +LL + Sbjct: 704 FLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQL--SLLNYM 754 >gi|229160708|ref|ZP_04288700.1| Flagellar basal-body rod protein FlgC [Bacillus cereus R309803] gi|228622723|gb|EEK79557.1| Flagellar basal-body rod protein FlgC [Bacillus cereus R309803] Length = 137 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAEPGADLYERRSVVLESN 50 >gi|209963543|ref|YP_002296458.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum centenum SW] gi|209957009|gb|ACI97645.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum centenum SW] Length = 137 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 13/73 (17%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS------PEN 49 L + F A + + + + N+ NA + Y R+ + + Sbjct: 4 LASSFGIAASGMKAQATRLRVVAENMANASSTGETPGADPYRRKTIVFDSVLDRALRADT 63 Query: 50 VTVVTQRSENKNM 62 V V T ++ + Sbjct: 64 VRVKTIGRDSSDF 76 >gi|220925380|ref|YP_002500682.1| flagellar basal body rod protein FlgC [Methylobacterium nodulans ORS 2060] gi|219949987|gb|ACL60379.1| flagellar basal-body rod protein FlgC [Methylobacterium nodulans ORS 2060] Length = 136 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 13/75 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTIS------P 47 M + A + S + I NI NAD++ Y R+ Sbjct: 1 MDFMKAIGIAASGLRAQSGRMRVISENIANADSEPKSAGAEPYRRKVPTFANRLDRELDA 60 Query: 48 ENVTVVTQRSENKNM 62 V + R + Sbjct: 61 SVVELGRVRRDQSPF 75 Score = 40.0 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VNL E + + ++SY + +I +M+ ++ +K Sbjct: 96 NVNLLVETVDMREAQRSYEANLNMITAARRMISRTIDILK 135 >gi|170755952|ref|YP_001782255.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169121164|gb|ACA45000.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 255 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y D Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTDLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGSKTIGTDASGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGSKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 >gi|326386931|ref|ZP_08208545.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] gi|326208611|gb|EGD59414.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] Length = 247 Score = 45.4 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 25/123 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + A + + + Q I N+ N+ + T + + R+ Sbjct: 1 MDRLIYTAYSGMSASMVQQRVIANNMANSQTTGFRAEMLAATPVSLKGSGLEARAMTDAE 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 L MM+ L N Sbjct: 61 VRGASMKQGEMTQTGNPLDVAFNGDTMMAVQARDGTEAYTRRGDLTADANGMLVNGDNAP 120 Query: 123 LGK 125 + Sbjct: 121 VLG 123 >gi|323341388|ref|ZP_08081632.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC 25644] gi|323091265|gb|EFZ33893.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC 25644] Length = 139 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 40/137 (29%), Gaps = 10/137 (7%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 MS+ + + + NI N + + Y ++ + + Sbjct: 1 MSIFNGLQINASGLSLERMKLDVASTNIANVNTTRTAEGGPYKKKTVEFSENLRQAQGTN 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + + +++ + + + N + + + ++ +Y Sbjct: 61 KITSAGVKVTNIAEDNTTKLTYDPTNPDA----DANGYVEMPNVNMADEMVDMIQAMRTY 116 Query: 115 SKNLSEDILGKTVIDNA 131 N+S K ++ A Sbjct: 117 EANVSSTEANKNILKKA 133 >gi|224370789|ref|YP_002604953.1| FlgC [Desulfobacterium autotrophicum HRM2] gi|223693506|gb|ACN16789.1| FlgC [Desulfobacterium autotrophicum HRM2] Length = 165 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M LL + + I N+ N D Y R+ + Sbjct: 1 MDLLDSMKISATGLAAHRTKMNVIAENLANVDTTRTADGGPYRRKMVVFKD 51 >gi|531461|gb|AAA67879.1| orfF [Bacillus subtilis subsp. subtilis str. 168] Length = 271 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 20/250 (8%), Positives = 59/250 (23%), Gaps = 16/250 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI NA+ Y + R+ + + Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118 ++ + + + + S +L S Sbjct: 49 LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAET 108 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 +E + A+ + + +++ + + + L + Sbjct: 109 NEKAALFYPVQTADGIRYSKSSTFSLNENNQLTINGRPILSTDRQPITVDNENFTVSENG 168 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + A + ++ + + ND+ + + R + Sbjct: 169 TVTTNGRTAGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSARGNNQVAYSLKTRRLRGF 228 Query: 239 KMNSYTVTSE 248 T Sbjct: 229 SNVDVTSAYT 238 >gi|94495410|ref|ZP_01301990.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424798|gb|EAT09819.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 247 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 4/211 (1%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + N A A + ASI N+ NA+ + R++ Sbjct: 1 MDRLVNTALTAMRGAMARQASIANNLANANTVGFRAEIANAETRWIQGESFDTRAQASEQ 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A + L +++ + L+ S Sbjct: 61 VIAADMAQGAVTETGNPLDVALDGDALLTVQATDGSEAYTRRGDLKVSDSGLLTTGDGLP 120 Query: 123 LGK----TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 + ++ + V + S V + A+ + ++ + S + ND + Sbjct: 121 VLGEGGPVILPQMDSVSIAKDGSIWGVPQGGDPANPQQVDKLKLVNAAGSSIAKGNDGLF 180 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGIST 209 + D L + S + Sbjct: 181 REVNGGALPSDPLATVTSGSLEGSNVNSTQA 211 >gi|126653751|ref|ZP_01725669.1| flagellar basal-body rod protein C [Bacillus sp. B14905] gi|126589715|gb|EAZ83851.1| flagellar basal-body rod protein C [Bacillus sp. B14905] Length = 153 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 10/55 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTI 45 MS+ N + + I N+ N D Y R+ T Sbjct: 1 MSIFHGMNTTASALTAQRLRMDVISSNMANMDTTRARQVNGEWEPYRRKSVTFTA 55 >gi|170725953|ref|YP_001759979.1| flagellar basal body rod protein FlgC [Shewanella woodyi ATCC 51908] gi|169811300|gb|ACA85884.1| flagellar basal-body rod protein FlgC [Shewanella woodyi ATCC 51908] Length = 139 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN + + + S + + NI NAD Sbjct: 2 MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 33 Score = 37.7 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 100 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTL 135 >gi|183598615|ref|ZP_02960108.1| hypothetical protein PROSTU_02015 [Providencia stuartii ATCC 25827] gi|188020794|gb|EDU58834.1| hypothetical protein PROSTU_02015 [Providencia stuartii ATCC 25827] Length = 134 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54 M+LL++F+ + + SQ+ N+ NA + + + ++P+ V Sbjct: 1 MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDGEPFRAKQVVFQMTPQGRNGVG 60 Query: 55 QRSENKNMFD 64 ++ + D Sbjct: 61 GVRVSQLIED 70 Score = 38.9 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 V++ E+ I +SY + +++ +LQ L Sbjct: 95 NVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130 >gi|228938858|ref|ZP_04101458.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971739|ref|ZP_04132360.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978348|ref|ZP_04138725.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis Bt407] gi|228781365|gb|EEM29566.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis Bt407] gi|228787829|gb|EEM35787.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820707|gb|EEM66732.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939358|gb|AEA15254.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis serovar chinensis CT-43] Length = 137 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|229043498|ref|ZP_04191208.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH676] gi|229144356|ref|ZP_04272762.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST24] gi|296502344|ref|YP_003664044.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis BMB171] gi|228639143|gb|EEK95567.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST24] gi|228725876|gb|EEL77123.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH676] gi|296323396|gb|ADH06324.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis BMB171] Length = 137 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGTDLYERRSVVLESN 50 >gi|212634346|ref|YP_002310871.1| flagellar basal body rod protein FlgC [Shewanella piezotolerans WP3] gi|212555830|gb|ACJ28284.1| Flagellar basal-body rod protein FlgC [Shewanella piezotolerans WP3] Length = 138 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 13/107 (12%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSL +FN A + + S + + NI NA + + T R+ + Sbjct: 1 MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DAVSSSAGETYRARHP 47 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107 ++ A Q + ++ + P Sbjct: 48 IFEAEMSKAQQHQSASQSVAVKGIVESDLPLNKEFSPGHPMADTDGF 94 Score = 37.3 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMANMISASRSYQMNVQVTDAAKSMLQQTL 134 >gi|115523177|ref|YP_780088.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris BisA53] gi|115517124|gb|ABJ05108.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris BisA53] Length = 138 Score = 45.4 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45 L A A + S + + N+ NA++ Y R+ T Sbjct: 5 LQASIQIASSGLEVQSTRLRVVSENLANANSTGRAPGAEPYRRKTTTFAA 54 >gi|237753202|ref|ZP_04583682.1| flagellar basal-body rod protein flgc proximal rod protein [Helicobacter winghamensis ATCC BAA-430] gi|229375469|gb|EEO25560.1| flagellar basal-body rod protein flgc proximal rod protein [Helicobacter winghamensis ATCC BAA-430] Length = 166 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 17/92 (18%) Query: 4 LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRS 57 L+ F+ + + Q+ I NI NA+ + Y RR+ + Sbjct: 3 LSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELVLKAF----------- 51 Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89 + + ++ ++ + + L ++ E Sbjct: 52 DFDKVLNQKYEKSNNLLEYEDPLNEMDSFDEQ 83 >gi|23099008|ref|NP_692474.1| flagellar basal body rod protein FlgC [Oceanobacillus iheyensis HTE831] gi|22777236|dbj|BAC13509.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] Length = 151 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 13/34 (38%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ N + + + + N+ NA + Sbjct: 1 MSIFNSMNTSASGLTAQRLRMDIVSSNVANAQST 34 >gi|307546970|ref|YP_003899449.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM 2581] gi|307218994|emb|CBV44264.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM 2581] Length = 135 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45 MS+ +VF + + + SQ+ N+ NAD+ + Y + + Sbjct: 1 MSMFSVFEISGSAMSAQSQRMNVTASNLANADSVAGPDGEAYRAKQVLFET 51 Score = 40.8 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 + Y + V+ E+ +I +SY + +++ ++L L Sbjct: 87 DQGYVDMPNVDPAAEMVNMISASRSYQANVEVMDTNKQLLLKTLSM 132 >gi|163856433|ref|YP_001630731.1| flagellar basal body rod protein FlgC [Bordetella petrii DSM 12804] gi|163260161|emb|CAP42463.1| flagellar basal-body rod protein FlgC [Bordetella petrii] Length = 139 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 16/73 (21%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN-KN-----YVRRDTMTTISP------- 47 MSL ++F+ A + SQ+ N+ NAD+ Y R + ++P Sbjct: 1 MSLTSIFDIAGSALQAQSQRMNVSASNLANADSAVGPDGQPYRARQVVFQVNPPAGQAYG 60 Query: 48 ---ENVTVVTQRS 57 V V Sbjct: 61 REIGGVRVAGVVQ 73 Score = 36.5 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475 V+ E +I +SY + +++ + M++TL Sbjct: 99 NVDPVAETVNMIAASRSYQANVEVLNTAKQLMMKTL 134 >gi|30261743|ref|NP_844120.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Ames] gi|47526963|ref|YP_018312.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. 'Ames Ancestor'] gi|49184573|ref|YP_027825.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Sterne] gi|49480942|ref|YP_035864.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143711|ref|YP_083115.1| flagellar basal body rod protein FlgC [Bacillus cereus E33L] gi|65319012|ref|ZP_00391971.1| COG1558: Flagellar basal body rod protein [Bacillus anthracis str. A2012] gi|165869530|ref|ZP_02214189.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0488] gi|167633252|ref|ZP_02391577.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0442] gi|170686301|ref|ZP_02877523.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0465] gi|170706453|ref|ZP_02896913.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0389] gi|190566322|ref|ZP_03019240.1| flagellar basal-body rod protein FlgC [Bacillus anthracis Tsiankovskii-I] gi|196038959|ref|ZP_03106266.1| flagellar basal-body rod protein FlgC [Bacillus cereus NVH0597-99] gi|218902859|ref|YP_002450693.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH820] gi|227815498|ref|YP_002815507.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. CDC 684] gi|228914323|ref|ZP_04077938.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926780|ref|ZP_04089848.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933028|ref|ZP_04095891.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945347|ref|ZP_04107702.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090705|ref|ZP_04221938.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-42] gi|229121296|ref|ZP_04250527.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 95/8201] gi|229155315|ref|ZP_04283426.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 4342] gi|229602307|ref|YP_002866143.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0248] gi|254683233|ref|ZP_05147094.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. CNEVA-9066] gi|254723821|ref|ZP_05185607.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. A1055] gi|254740994|ref|ZP_05198682.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Kruger B] gi|254755237|ref|ZP_05207271.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Vollum] gi|254759773|ref|ZP_05211797.1| flagellar basal body rod protein FlgC [Bacillus anthracis str. Australia 94] gi|300117337|ref|ZP_07055127.1| flagellar basal body rod protein FlgC [Bacillus cereus SJ1] gi|301053281|ref|YP_003791492.1| flagellar basal body rod protein [Bacillus anthracis CI] gi|30255971|gb|AAP25606.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. Ames] gi|47502111|gb|AAT30787.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. 'Ames Ancestor'] gi|49178500|gb|AAT53876.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. Sterne] gi|49332498|gb|AAT63144.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977180|gb|AAU18730.1| flagellar basal-body rod protein [Bacillus cereus E33L] gi|164714970|gb|EDR20488.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0488] gi|167531290|gb|EDR93968.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0442] gi|170128551|gb|EDS97418.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0389] gi|170669998|gb|EDT20739.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0465] gi|190562457|gb|EDV16424.1| flagellar basal-body rod protein FlgC [Bacillus anthracis Tsiankovskii-I] gi|196030104|gb|EDX68704.1| flagellar basal-body rod protein FlgC [Bacillus cereus NVH0597-99] gi|218535692|gb|ACK88090.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH820] gi|227007024|gb|ACP16767.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. CDC 684] gi|228628240|gb|EEK84956.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 4342] gi|228662141|gb|EEL17750.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 95/8201] gi|228692647|gb|EEL46373.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-42] gi|228814319|gb|EEM60585.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826629|gb|EEM72400.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832893|gb|EEM78462.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845317|gb|EEM90353.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266715|gb|ACQ48352.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str. A0248] gi|298725172|gb|EFI65824.1| flagellar basal body rod protein FlgC [Bacillus cereus SJ1] gi|300375450|gb|ADK04354.1| flagellar basal body rod protein [Bacillus cereus biovar anthracis str. CI] Length = 137 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|52082162|ref|YP_080953.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC 14580] gi|52787554|ref|YP_093383.1| FlhO [Bacillus licheniformis ATCC 14580] gi|319648039|ref|ZP_08002256.1| FlhO protein [Bacillus sp. BT1B_CT2] gi|52005373|gb|AAU25315.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC 14580] gi|52350056|gb|AAU42690.1| FlhO [Bacillus licheniformis ATCC 14580] gi|317389674|gb|EFV70484.1| FlhO protein [Bacillus sp. BT1B_CT2] Length = 279 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 25/251 (9%), Positives = 65/251 (25%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI NA+ Y PE + + K Sbjct: 1 MLKGLYTATSAMITQQRRTEMLTNNIANANTPGYKEDQGSIRSFPEMLLSRIESDSFKAG 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + + IG + LK S D + + I+ + + + Sbjct: 61 SASRSFSTQTPIGSINTGVYMQELKPQFSQGDLQSTNEPTDIAISEAEVPVNGETNDKAA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182 L V +V + ++ + + + + L N + T Sbjct: 121 LFYAVRLENGDVRYSRSSRFSLNENNQLTINGRLVLSTENRPITVGSENFQVAEDGTVTE 180 Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 + + + + + ++ N + + + ++ Sbjct: 181 NGQNLGRIDVRIALDTRNLAREGDDLYRTENGEALPSAVGNPEVTYSVKQGMTERSNVDV 240 Query: 243 YTVTSESNPIF 253 +E + Sbjct: 241 TRAYTEMTAAY 251 >gi|51894141|ref|YP_076832.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM 14863] gi|51857830|dbj|BAD41988.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM 14863] Length = 147 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 6/54 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48 M + + + + I N+ N + Y RR + P Sbjct: 1 MRMFQAMEASASALTAERLRMDVIANNLANYRTTRTAEGGPYRRRTVVVEERPN 54 >gi|153011526|ref|YP_001372740.1| flagellar basal body rod protein FlgC [Ochrobactrum anthropi ATCC 49188] gi|151563414|gb|ABS16911.1| flagellar basal-body rod protein FlgC [Ochrobactrum anthropi ATCC 49188] Length = 140 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49 MS L + A + + S + + NI NA + Y R+ T + Sbjct: 1 MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTAETADADPYRRKTVSFRTELEQG 60 Query: 50 VTVVTQR 56 R Sbjct: 61 TGAAEVR 67 >gi|146278635|ref|YP_001168794.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides ATCC 17025] gi|145556876|gb|ABP71489.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 126 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVL 67 + + + + NI N D + R+ P + +++ K+ Sbjct: 14 GMRSQALRLRHVSENIANVDTPGFHRKTVSFQSEPDSGLVSTGPVRLDRSSLQKMY 69 Score = 38.1 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 VNL E++ + ++SY + ++ +M Q+L + ++ Sbjct: 85 SNVNLVVEIADAREAQRSYEANLRMFDQARQMTQSLFDLLR 125 >gi|46906933|ref|YP_013322.1| flagellar basal body rod protein FlgG [Listeria monocytogenes serotype 4b str. F2365] gi|46880199|gb|AAT03499.1| putative flagellar basal-body rod protein [Listeria monocytogenes serotype 4b str. F2365] Length = 259 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 43/218 (19%), Gaps = 15/218 (6%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + S A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRSEANGDLYNAETGQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 ++V D + + + + ++ + E + Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220 >gi|91976615|ref|YP_569274.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] gi|91683071|gb|ABE39373.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] Length = 244 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 31/139 (22%), Gaps = 4/139 (2%) Query: 9 KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENKNMFD 64 + QQ ++ RN+ N + + R T + E + + + Sbjct: 7 IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAVT 66 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 + ++ L + + LS D++ Sbjct: 67 GYTDFSAGSLQLTGNSTDAAVLGDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLVL 126 Query: 125 KTVIDNAEEVVQNFNTSAR 143 + + Sbjct: 127 AANGTIKVPLTDVNLSIGT 145 >gi|124268256|ref|YP_001022260.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1] gi|124261031|gb|ABM96025.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1] Length = 138 Score = 45.4 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISP 47 MS+L +FN + + + SQ+ + N+ NAD Y R + P Sbjct: 1 MSMLNIFNVSGSAVSAQSQRLNVVASNLANADTVAGPDGKAYKARQVVFQTLP 53 >gi|148270547|ref|YP_001245007.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila RKU-1] gi|170289253|ref|YP_001739491.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2] gi|147736091|gb|ABQ47431.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila RKU-1] gi|170176756|gb|ACB09808.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2] Length = 140 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 MS + N + + + + NI NA+ Y R+ + Sbjct: 2 MSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAE 52 Score = 40.4 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ LI +++Y+ + T M+ + L+ + Sbjct: 92 ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQIGR 139 >gi|118581824|ref|YP_903074.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM 2379] gi|118504534|gb|ABL01017.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM 2379] Length = 145 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD---NK-N--YVRRDTMTTISP 47 M + N + + + + I N+ NA+ Y R+D + +P Sbjct: 1 MDFFSAMNVSASALSAERTRMNLISSNLANANATRTPEGGPYKRKDAVFAATP 53 >gi|239815248|ref|YP_002944158.1| hypothetical protein Vapar_2263 [Variovorax paradoxus S110] gi|239801825|gb|ACS18892.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 259 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 11/156 (7%), Positives = 25/156 (16%), Gaps = 13/156 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + V + N + I N+ NA Y R + R + Sbjct: 1 MSDVLAISLNSMQQDMARLERISMNMANATTPGYKREVASSLQVGAGAFSDALREARAST 60 Query: 63 FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109 A ++ + Sbjct: 61 LAGRAAGSPAAGTLLVQTDARPGSLKSTGQSLDVALTAAGFFEVSTDAGLAYTRQGSWQL 120 Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 + + ++ +V Sbjct: 121 DARGRLVTAQGHPVMGVGGEIVLSRPNPVIDASGQV 156 >gi|169827118|ref|YP_001697276.1| flagellar basal body rod protein FlgC [Lysinibacillus sphaericus C3-41] gi|168991606|gb|ACA39146.1| Flagellar basal-body rod protein [Lysinibacillus sphaericus C3-41] Length = 153 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 10/55 (18%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTI 45 MS+ N + + I N+ N D Y R+ T Sbjct: 1 MSIFHGMNTTASALTAQRLRMDVISSNMANMDTTRARQVNGEWEPYRRKSVTFTA 55 >gi|254255088|ref|ZP_04948405.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899733|gb|EAY71576.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 241 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 28/145 (19%), Gaps = 1/145 (0%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 A A + N+ NA + R D + S V ++ Sbjct: 5 IYTAMTGAAYAQRALGVRANNLANAQTAGF-RADLVRAESLTPDGVGYDSRHLAHLVSTD 63 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 + + + + + L + +LG Sbjct: 64 VDVAPGPMSETGRSLDVAIAGAGYLTVETDDGPAYTRAGHLSIDGDGALTVNGRPVLGDG 123 Query: 127 VIDNAEEVVQNFNTSAREVQKIRAD 151 + + + Sbjct: 124 GPIVLPAHRSATIGGDGTISVVPSG 148 >gi|295399807|ref|ZP_06809788.1| flagellar basal-body rod protein FlgC [Geobacillus thermoglucosidasius C56-YS93] gi|312111681|ref|YP_003989997.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1] gi|294978210|gb|EFG53807.1| flagellar basal-body rod protein FlgC [Geobacillus thermoglucosidasius C56-YS93] gi|311216782|gb|ADP75386.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1] Length = 150 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 5/34 (14%), Positives = 11/34 (32%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ + + + + N+ N D Sbjct: 1 MSMFQNLDITASALTAQRLRMDVVSSNMANVDTT 34 >gi|126734106|ref|ZP_01749853.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] gi|126716972|gb|EBA13836.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] Length = 238 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 7/117 (5%), Positives = 21/117 (17%), Gaps = 3/117 (2%) Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70 Q+ + ++ NI NA + + + + + Sbjct: 12 QSGLL---NEMQTLANNIANASTTGFRAEGIIFAEHVKTIGPDAPSLSMATANVRNTVMT 68 Query: 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127 A+ Q + + + + Sbjct: 69 QGALAQTGGTFDLAIEGDGFFLVETPGGPRLTRAGAFGPNENGDLVTADGYAVLDAG 125 >gi|83589621|ref|YP_429630.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 39073] gi|83572535|gb|ABC19087.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 39073] Length = 145 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45 M LL + + + I N+ N + Y R + Sbjct: 1 MELLPALAISASGLTAERLRLDIIANNLANINTTRTPRGGPYRREVPVFAE 51 Score = 36.5 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 5/31 (16%), Positives = 14/31 (45%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +N+ E+ +I ++Y + ++ M Sbjct: 106 NINIVNEMVDMITASRAYEANVTVLNAAKAM 136 >gi|332533177|ref|ZP_08409046.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas haloplanktis ANT/505] gi|332037459|gb|EGI73913.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas haloplanktis ANT/505] Length = 143 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MSL VF+ A + + + + + NI NA+ + Y R + + Sbjct: 1 MSLYNVFDIAGSGMSAQNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASV 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 + + KVL S Q + N + ++ + + SY Sbjct: 61 SNQQGSAVGVKVLGIVESDAPLQIEYNPNHPSADENGYIYKPNVNVVEEMANMISASRSY 120 Query: 115 SKN 117 N Sbjct: 121 QTN 123 Score = 37.7 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 40/122 (32%) Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414 +V + + A + + + +V+ + + + L Sbjct: 17 QNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASVSNQQGSAVGVKVLGIV 76 Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474 SD+ + + Y VN+ EE++ +I +SY + ++ +ML Sbjct: 77 ESDAPLQIEYNPNHPSADENGYIYKPNVNVVEEMANMISASRSYQTNVQVADAAKQMLSK 136 Query: 475 LL 476 L Sbjct: 137 TL 138 >gi|114330359|ref|YP_746581.1| flagellar basal-body rod protein FlgC [Nitrosomonas eutropha C91] gi|114307373|gb|ABI58616.1| flagellar basal-body rod protein FlgC [Nitrosomonas eutropha C91] Length = 134 Score = 45.4 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46 MSL +VFN A + SQ+ + N+ NAD+ + Y R + Sbjct: 1 MSLFSVFNVAGSAMAAQSQRLNVVASNLANADSATSSTGEAYRSRQVVFRTV 52 >gi|260886210|ref|ZP_05897473.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839794|ref|YP_004414374.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] gi|260863929|gb|EEX78429.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747558|gb|AEC00915.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] Length = 264 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + Q I + VN+ E+ LI + Y ++ ++ D M + Sbjct: 200 PQQGAEPQAATGDIQQGMLENSNVNIASEMVSLINNYRIYEAGSRALVTQDSMTDKTVN 258 Score = 38.1 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42 +L A + + + I N+ NA + Y R + + Sbjct: 1 MLRGLYVAASGMITETNRTDVIANNLANAASSGYKRDEAI 40 >gi|228907377|ref|ZP_04071235.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL 200] gi|228852238|gb|EEM97034.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL 200] Length = 137 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGTDLYERRSVVLESN 50 >gi|229029424|ref|ZP_04185507.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1271] gi|228731883|gb|EEL82782.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1271] Length = 137 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 Score = 36.9 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E++ ++ ++ Y + ++ KML LE + Sbjct: 97 NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136 >gi|116250480|ref|YP_766318.1| flagellar basal body rod protein FlgC [Rhizobium leguminosarum bv. viciae 3841] gi|115255128|emb|CAK06202.1| putative flagellar basal-body rod protein flgc (putative proximal rod protein) [Rhizobium leguminosarum bv. viciae 3841] Length = 138 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52 L A A + S + + NI NA D Y R+ V Sbjct: 4 LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRSNGVET 63 Query: 53 VTQ 55 V Sbjct: 64 VGV 66 >gi|170758901|ref|YP_001787959.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405890|gb|ACA54301.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 255 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 >gi|196033444|ref|ZP_03100856.1| flagellar basal-body rod protein FlgC [Bacillus cereus W] gi|195993878|gb|EDX57834.1| flagellar basal-body rod protein FlgC [Bacillus cereus W] Length = 137 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADIYERRSVVLESN 50 >gi|56965598|ref|YP_177332.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911844|dbj|BAD66371.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 265 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 32/151 (21%), Gaps = 21/151 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48 +L A + A + N+ NA Y +++ P Sbjct: 1 MLKGLYTATSGMLAAQYHQDMLANNLANAQTPGYKAEQSVSRAFPTFLMEAQSVSKAGTV 60 Query: 49 -----NVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + + + + L E + A N Sbjct: 61 QKQGLGSLATAVYLQEQQTNARQGDIQETGNTTDLALLQTGLEENNAVFFAVMTENGIRY 120 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132 L+ + +L T + Sbjct: 121 TRNGDLQVDSQGRLATAGGHLLQSTEGGPIQ 151 >gi|90422608|ref|YP_530978.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris BisB18] gi|90104622|gb|ABD86659.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris BisB18] Length = 139 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45 L A A + S + + N+ NA++ Y R+ T T Sbjct: 5 LQASVQIASSGLEAQSTRLRVVSENLANANSTGRSPGAEPYQRKTTTFTA 54 >gi|289609890|emb|CBI60366.1| unnamed protein product [Sordaria macrospora] Length = 90 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 10/76 (13%) Query: 21 FASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRSENKNMFDKVLHAH 70 ASI N+ N + + + + + + + L Sbjct: 1 MASISHNLANVGTTGFKKSRAEFADVIASNLAVAPTQMVGSGTVVKGNRQQFGEGNLVQS 60 Query: 71 SSAIGQQRLLQSFEAL 86 SS++ F AL Sbjct: 61 SSSLDIAIAGDGFFAL 76 >gi|114562340|ref|YP_749853.1| flagellar basal body rod protein FlgC [Shewanella frigidimarina NCIMB 400] gi|114333633|gb|ABI71015.1| flagellar basal-body rod protein FlgC [Shewanella frigidimarina NCIMB 400] Length = 138 Score = 45.4 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN + + + S + + NI NAD Sbjct: 1 MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 32 Score = 36.9 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ T MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVADATKSMLQQTLRM 136 >gi|27363704|ref|NP_759232.1| flagellar basal body rod protein FlgF [Vibrio vulnificus CMCP6] gi|27359820|gb|AAO08759.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus CMCP6] Length = 249 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 9/124 (7%), Positives = 21/124 (16%), Gaps = 12/124 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56 + A + Q N+ N + R Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 N + + + + + + + L+ Sbjct: 61 RPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLLS 114 Query: 117 NLSE 120 N S Sbjct: 115 NASG 118 Score = 40.8 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478 I VN E++ LI +++ + + K++ ++M +LL Sbjct: 198 QIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDKSSDSLLRM 248 >gi|83814111|ref|YP_446742.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] gi|83755505|gb|ABC43618.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] Length = 241 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 S + + + T V+ EL+ +I++++ + K I TD +L Sbjct: 172 SGASFAAGDAQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVL 231 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 9/123 (7%), Positives = 23/123 (18%), Gaps = 3/123 (2%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66 F A + Q + N+ NA Y + T + + ++ Sbjct: 5 FQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRRLEQA 63 Query: 67 LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILG 124 ++ + E + + + Sbjct: 64 NDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPEGREVM 123 Query: 125 KTV 127 Sbjct: 124 GEG 126 >gi|56421867|ref|YP_149185.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] gi|56381709|dbj|BAD77617.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] Length = 276 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + + + N VA TL++ Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFAVRDDGTIIDENGTATRLGVAFAANPQTLVK 201 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 RS + L V + + + V+++ ++ L+ +++ + Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRAFEANQ 255 Query: 463 KLIMFTDKMLQTLLE 477 K++ D+ L + Sbjct: 256 KIVQAYDRSLDKAVN 270 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 6/161 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + N+ NA+ Y P ++ R E++ + Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFP---ELLMSRLEDQPI 57 Query: 63 FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 A + IG + L D I L D + + Sbjct: 58 PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI-ALVDGQVPVDRASGQ 116 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N + V+ + +E + Sbjct: 117 RGALFFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWYVLD 157 >gi|16080693|ref|NP_391521.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] gi|221311597|ref|ZP_03593444.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315924|ref|ZP_03597729.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320837|ref|ZP_03602131.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221325122|ref|ZP_03606416.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. SMY] gi|6648066|sp|P39752|FLHO_BACSU RecName: Full=Flagellar hook-basal body complex protein flhO gi|1763700|emb|CAB05950.1| flhO [Bacillus subtilis subsp. subtilis str. 168] gi|2636165|emb|CAB15657.1| putative flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] Length = 270 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 19/255 (7%), Positives = 62/255 (24%), Gaps = 16/255 (6%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + NI NA+ Y + R+ + + Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118 ++ + + + + S +L S Sbjct: 49 LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAET 108 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178 +E + A+ + + +++ + + + L + Sbjct: 109 NEKAALFYPVQTADGIRYSKSSTFSLNENNQLTINGRPILSTDRQPITVDNENFTVSENG 168 Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238 T + A + ++ + + ND+ + + Sbjct: 169 TVTTNGRTAGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVAYSLKQGVSELS 228 Query: 239 KMNSYTVTSESNPIF 253 ++ + +E + Sbjct: 229 NVDVTSAYTEMTEAY 243 >gi|57167903|ref|ZP_00367043.1| probable flagellin Cj0887c [Campylobacter coli RM2228] gi|57021025|gb|EAL57689.1| probable flagellin Cj0887c [Campylobacter coli RM2228] Length = 734 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 30/354 (8%), Positives = 106/354 (29%), Gaps = 3/354 (0%) Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + D + +K + I + ++ T +++ + + + Sbjct: 383 MTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 442 Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246 + ++ + ++ + ST+ + + T + + S +T Sbjct: 443 LNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNSGVVTGSNDIT 502 Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 I + + + + + ++ + + Sbjct: 503 YGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVT 562 Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366 +S + ++D + T+ P + + + + + ++ Sbjct: 563 DKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLD 622 Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425 ++ N DS ++N + G + L ++ + + ++ ++ Sbjct: 623 SMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRT 682 Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 + ++ SN + V+ E + L++ + +Y S K ++ +LL + Sbjct: 683 SFLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQL--SLLNYM 734 >gi|294501851|ref|YP_003565551.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] gi|294351788|gb|ADE72117.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] Length = 274 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 48/186 (25%), Gaps = 29/186 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49 + F A + +Q + NI NA+ + + + P + Sbjct: 1 MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60 Query: 50 VTVVTQRSEN--------------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-- 93 ++ Q ++ N L S + + Q+ + + Sbjct: 61 RSISVQNKKDIGAINTGVYMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKEGGLFFVVQ 120 Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 N S E + + + T + +NF ++ Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQV 180 Query: 154 KEIELE 159 +I++ Sbjct: 181 AQIDIA 186 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 13/199 (6%), Positives = 48/199 (24%), Gaps = 1/199 (0%) Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339 D + E ++ + + + + Sbjct: 70 DIGAINTGVYMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKEGGLFFVVQSPDNTPQYT 129 Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS-FNKNFIFDPVAGINTNV 398 N + + + + N + + + +N I Sbjct: 130 RNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQVAQIDIAYAS 189 Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458 L + G E + + + + + + V+ + ++ L+ +++ Sbjct: 190 DLQTIKKAGNGLYETLNNQPLPSARNNPGISYQLKQGFVERSNVDAAQNMTDLLTAYRAF 249 Query: 459 NISNKLIMFTDKMLQTLLE 477 + K++ D+ + Sbjct: 250 EANQKIMQAYDRSMDKAAN 268 >gi|95929195|ref|ZP_01311939.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95134693|gb|EAT16348.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 111 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 1/110 (0%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61 ++ + A + + + S N+ N+ + Y + V Q+ N Sbjct: 1 MIDAMSSAMSGLQAQTLRLNSTANNVANSQTEGYAPSQVTLAENEQGGVRAQLQKPVNGT 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + +S + + + K+ SA+ + L D+ Sbjct: 61 GDAQTAENQTSKVDLAKEMVDMMQTKQFYSANLKTVSVADSMSGDLLDTF 110 Score = 43.5 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%) Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430 + + + + A N YA + + E + K Sbjct: 2 IDAMSSAMSGLQAQTLRLNSTANNVANSQTEGYAPSQVTLAENEQGGVRAQLQKPVNGTG 61 Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 + + T V+L +E+ +++ +Q Y+ + K + D M LL Sbjct: 62 DAQTAENQTSKVDLAKEMVDMMQTKQFYSANLKTVSVADSMSGDLL 107 >gi|42780837|ref|NP_978084.1| flagellar basal body rod protein FlgC [Bacillus cereus ATCC 10987] gi|222095368|ref|YP_002529428.1| flagellar basal body rod protein flgc [Bacillus cereus Q1] gi|229195957|ref|ZP_04322710.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1293] gi|42736757|gb|AAS40692.1| flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 10987] gi|221239426|gb|ACM12136.1| flagellar basal-body rod protein FlgC [Bacillus cereus Q1] gi|228587516|gb|EEK45581.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1293] Length = 137 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 Score = 36.9 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E++ ++ ++ Y + ++ KML LE + Sbjct: 97 NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136 >gi|118477180|ref|YP_894331.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis str. Al Hakam] gi|118416405|gb|ABK84824.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al Hakam] Length = 137 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|88597597|ref|ZP_01100831.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190189|gb|EAQ94164.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 750 Score = 45.0 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 33/388 (8%), Positives = 116/388 (29%), Gaps = 3/388 (0%) Query: 93 DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 ++ + + ++ + D + + D + +K Sbjct: 365 NNGDITNLNNPVTIQINGQNFEIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424 Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212 + I + ++ T +++ + + + + ++ + ++ + ST+ Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484 Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272 + + T + + S +T I + + Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544 Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332 + + + ++ + + +S + ++D Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604 Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392 + T+ P + + + + + ++ ++ N DS ++N + Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664 Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451 G + L ++ + + ++ ++ + +I SN + V+ E + L Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNIQSIKSNVIDVDYGEAMMNL 724 Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479 ++V+ +Y S K ++ +LL + Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750 >gi|332704824|ref|ZP_08424912.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] gi|332554973|gb|EGJ52017.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] Length = 277 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 10/148 (6%), Positives = 22/148 (14%), Gaps = 31/148 (20%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46 + A ++ + I N+ N Y Sbjct: 1 MQEAIYSAVFGALSSEHRMNIISNNLANVSTTGYKTDSVTFKDVFVPFAHDYILDSKEHL 60 Query: 47 ---PENVTVVTQRSEN-----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98 P + L + F + + Sbjct: 61 RAKPLWPDADVIAKPRLAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKIL-------TPDG 113 Query: 99 SPTHYISKLRDSLESYSKNLSEDILGKT 126 + + + L T Sbjct: 114 VRYTRNGHFNAMPNGQIVDSNGNPLLGT 141 Score = 41.9 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 15/197 (7%), Positives = 46/197 (23%) Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 + + + + G + + ++ Sbjct: 77 LAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKILTPDGVRYTRNGHFNAMPNGQIVDSNGN 136 Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + GS + G + F+ ++ Sbjct: 137 PLLGTDGPIFLSGSGVVEIDPAGNVSEGGAQVGTIALVRFDNPRGVIKDGQNLYKLSEDF 196 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 A + + I + + + V + E+ +I+V + + Sbjct: 197 EANEMAVSPGMPEITTGSDGTPQTRISPVIQQGFLESSNVEIVTEMVRMIEVNRVFEAYQ 256 Query: 463 KLIMFTDKMLQTLLEGV 479 K++ T M +L++ + Sbjct: 257 KIMRGTQDMDSSLIKSM 273 >gi|241766918|ref|ZP_04764724.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii 2AN] gi|241362622|gb|EER58470.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii 2AN] Length = 134 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54 MS+ ++F+ + + + SQ+ + N+ N D Y R + +P Sbjct: 1 MSMFSIFSVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGADSSA 60 Query: 55 QRSEN 59 + Sbjct: 61 GVRVS 65 >gi|15644117|ref|NP_229166.1| flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8] gi|281412855|ref|YP_003346934.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila RKU-10] gi|4981925|gb|AAD36435.1|AE001790_7 flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8] gi|281373958|gb|ADA67520.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila RKU-10] Length = 140 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 MS + N + + + + NI NA+ Y R+ + Sbjct: 2 MSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAE 52 Score = 40.4 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y VN+ E+ LI +++Y+ + T M+ + L+ + Sbjct: 92 ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQIGR 139 >gi|328958286|ref|YP_004375672.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4] gi|328674610|gb|AEB30656.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4] Length = 145 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 12/34 (35%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 MS+ + + + +I NI N + Sbjct: 1 MSIFDSMQINASGLSLERLKLDTISTNIANVNTT 34 Score = 38.5 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 E Y VN+ +E+ ++ ++Y+ + + + +ML L+ Sbjct: 97 EEGYVQMPNVNMADEMIDMMTTLRTYDANVTAMNASKEMLTKALQI 142 >gi|330811237|ref|YP_004355699.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379345|gb|AEA70695.1| Putative flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 147 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54 MS+ +VFN A + + + + ++ NI NA+ + Y R + + Sbjct: 1 MSIASVFNIAGSAMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60 Query: 55 QRSENKN 61 S + Sbjct: 61 SDSLFQE 67 Score = 39.2 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ +I +S+ + +++ M+Q +L Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143 >gi|295707199|ref|YP_003600274.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] gi|294804858|gb|ADF41924.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] Length = 274 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 46/186 (24%), Gaps = 29/186 (15%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49 + F A + +Q + NI NA+ + + + P + Sbjct: 1 MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60 Query: 50 VTVVTQRS--------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-- 93 ++ Q + L S + + Q+ + + Sbjct: 61 RSISVQNKKEIGAINTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQ 120 Query: 94 DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 N S E + + + T + +NF ++ Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQV 180 Query: 154 KEIELE 159 +I++ Sbjct: 181 AQIDIA 186 Score = 39.2 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 14/197 (7%), Positives = 50/197 (25%), Gaps = 3/197 (1%) Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340 + Q + + + S+ IA +N+P + Sbjct: 75 NTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQSPDNTPQYTRNSNF 134 Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 + ++ + N+ +A + T+ Sbjct: 135 TLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQVAQIDIAYASDLQTI 194 Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460 + E + + + + + + V+ + ++ L+ +++ Sbjct: 195 KKVGNGLY---ETLNNQPLPSARNNPGISYQLKQGFVERSNVDAAQSMTDLLTAYRAFEA 251 Query: 461 SNKLIMFTDKMLQTLLE 477 + K++ D+ + Sbjct: 252 NQKIMQAYDRSMDKAAN 268 >gi|255021352|ref|ZP_05293400.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus ATCC 51756] gi|254969215|gb|EET26729.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus ATCC 51756] Length = 138 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP 47 MSL +V + A + S + + N+ NA++ Y R+ + +P Sbjct: 1 MSLFSVLDVASSALTAQSYRLNVVASNLANANSATSSDGQPYRAREVVFAATP 53 Score = 40.0 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 E Y VN +E+ +I ++Y + ++ T +LQ L Sbjct: 92 EGYVQMPNVNPVDEMVNMISASRAYQANVNVMNTTKALLQKTL 134 >gi|125972983|ref|YP_001036893.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum ATCC 27405] gi|125713208|gb|ABN51700.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum ATCC 27405] Length = 134 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45 +I +NI N D Y R+ Sbjct: 24 EAISQNIANVDTTGYKRKTVAFEE 47 >gi|330826756|ref|YP_004390059.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] gi|329312128|gb|AEB86543.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] Length = 246 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 28/141 (19%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + + A+ + A + N+ N + + P + T R Sbjct: 1 MDRIIYTSMTGASAAAHRQAVLANNLANVSTYGFRAEMSSFRSVPLQGSGSTTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 + R L + A + + + Sbjct: 61 TSGHVETPGPVQRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTGLP 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + T Sbjct: 121 VLSDGGAPITAPQGAELTLGA 141 >gi|262276416|ref|ZP_06054225.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] gi|262220224|gb|EEY71540.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] Length = 249 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 25/125 (20%), Gaps = 14/125 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 + A + Q N+ NA + R D S + Sbjct: 1 MDRALFLAMSGAKQDMQALQLRANNLANASTTGF-RADLEQARSMQAYGEGLPTRVFNMT 59 Query: 61 -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 + + + A+ + + + L+ Sbjct: 60 ERPGYSFAQGSTITTGRELDVAIKGDGWLAVLDGTGQEG------YTRVGNLKVDQTGML 113 Query: 116 KNLSE 120 +N Sbjct: 114 QNGHG 118 Score = 40.0 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VN E++ LI +++ + + KL+ ++M Q ++ Sbjct: 198 SLLTGALEGSNVNPINEMTGLIDLQRHFEMQVKLMKTAEEMDQASNSLLR 247 >gi|241203100|ref|YP_002974196.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856990|gb|ACS54657.1| flagellar basal-body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 37/149 (24%), Gaps = 8/149 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56 + + + + ++ +I N+ N + + + N V Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 57 SENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 N + + L + + ++ AL + T + S+ Y Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAR 143 + + E V + Sbjct: 121 PVLDAGGAPIQLNTKGGEPAVGTDGIIYQ 149 >gi|330501138|ref|YP_004378007.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] gi|328915424|gb|AEB56255.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] Length = 243 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 12/191 (6%) Query: 10 AQNICNNASQ---QFASIVRNIENADNKNYVRRDTMTTIS----PENVTVVTQRSENKNM 62 AS+ N+ N + + R D + N Sbjct: 5 GYTAMTAASRTMSSLTVRANNLANVNTPGF-RADLEQAQAVAVEGYGYDSRHLARVKNNG 63 Query: 63 FD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119 + L A + + A++ A+ + N ++LR +L + Sbjct: 64 VNLAPGELMATGRDLDVAIQGRGLFAVEGDDGAERYTRNGALQVDAELRLTLNGRAVLGE 123 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 + D+ + + A+ D+ +++ + + + I Sbjct: 124 GGPIVLPEYDSLHIGRDGTVSVIPRGDFVTAEVDRIRVVDVDAA-DLTKDASGLLTRIDG 182 Query: 180 KTASKHDAHDF 190 + A DA Sbjct: 183 QPAEGLDAPVL 193 >gi|119775449|ref|YP_928189.1| flagellar basal body rod protein FlgF [Shewanella amazonensis SB2B] gi|119767949|gb|ABM00520.1| flagellar basal-body rod protein FlgF [Shewanella amazonensis SB2B] Length = 247 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 9/127 (7%), Positives = 27/127 (21%), Gaps = 12/127 (9%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60 A + + N+ NA+ + R + Sbjct: 5 LYIAMSGAKQNLNSLSIRANNLANANTDGFKADLEQSRSMQAFGEGLPTRVFAMTENPQA 64 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 + +++ + + + A+++ N L+ N Sbjct: 65 SFRHGPINSTARDLDVAVKGDGWIAVEDA------DGNEAYTRAGSLKFDETGLLTNSQG 118 Query: 121 DILGKTV 127 + Sbjct: 119 RPVMGDA 125 Score = 38.5 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 + VN EE+ LI +++ + + K++ ++ Sbjct: 196 ALESRAVEGSNVNPVEEMVALIDIQRQFELQVKMMKTAEE 235 >gi|319405399|emb|CBI79018.1| Flagellar basal-body rod protein flgC [Bartonella sp. AR 15-3] Length = 138 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%) Query: 1 MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45 MS L+A A + S + I N+ N ++ Y R+ Sbjct: 1 MSDLLIAAEQIATTGLSAQSTRLRVIAENLANVNSTGKSAGARPYQRKTVSFEA 54 >gi|168180937|ref|ZP_02615601.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|182668349|gb|EDT80328.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 255 Score = 45.0 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 42/229 (18%), Gaps = 28/229 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + + Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNIILNGVPSYSF 173 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210 + F ++ + + + +++ L + + Sbjct: 174 QVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVT 222 Score = 42.3 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNIILNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVTMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 >gi|308050374|ref|YP_003913940.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] gi|307632564|gb|ADN76866.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] Length = 139 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +F+ A + + S + + NI NA+ Sbjct: 1 MSLFKIFDTAGSGMSAQSVRLNTTASNIANAN 32 Score = 39.6 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY + ++ M Q L Sbjct: 99 NVNVVEEMANMISASRSYQANVQVASAAKDMAQQTLRL 136 >gi|94987182|ref|YP_595115.1| flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] gi|94731431|emb|CAJ54794.1| Flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] Length = 264 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 7/187 (3%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 + ++ + + N L + S + Q Sbjct: 72 AARVRIAVSNTDFAQGSMQFTGNPLDFAITGENGFFRIQSPQGNYLTRNGSFVLDATGQL 131 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + + + ++ L + Sbjct: 132 ---VTKQGWPVLGDGGPITIPEGTKKISITPDGRIFADDAEVGTIQFVSLDDVKKLEKVG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N + + + + I++ + + VN+ EE+ +I+V + ++ K+ Sbjct: 189 ANLY----RPKEGLEIIEGNANETGAIINQGFLESSNVNVVEEMVKMIEVNRQFDAYQKV 244 Query: 465 IMFTDKM 471 + +D + Sbjct: 245 MQTSDSL 251 Score = 41.2 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 12/226 (5%), Positives = 43/226 (19%), Gaps = 35/226 (15%) Query: 12 NICNNASQQ---FASIVRNIENADNKNYVRRDTMTTIS---------------------- 46 + A I N+ N + Y + + Sbjct: 7 SGLFAALSAEHRMNFIANNLANVNTAGYKQDKLAFKDTMIQFAHDQIREPIATVRSKPLF 66 Query: 47 --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 P N V N + + + + + + Sbjct: 67 PEPNNAARVRIAVSNTDFAQGSMQFTGNPLDFAITG------ENGFFRIQSPQGNYLTRN 120 Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISN 162 + + + A+ + + + Sbjct: 121 GSFVLDATGQLVTKQGWPVLGDGGPITIPEGTKKISITPDGRIFADDAEVGTIQFVSLDD 180 Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208 +++ + + + +A++ + + S + + Sbjct: 181 VKKLEKVGANLYRPKEGLEIIEGNANETGAIINQGFLESSNVNVVE 226 >gi|33596138|ref|NP_883781.1| flagellar basal body rod protein FlgC [Bordetella parapertussis 12822] gi|33601539|ref|NP_889099.1| flagellar basal body rod protein FlgC [Bordetella bronchiseptica RB50] gi|33573141|emb|CAE36788.1| flagellar basal-body rod protein FlgC [Bordetella parapertussis] gi|33575975|emb|CAE33054.1| flagellar basal-body rod protein FlgC [Bordetella bronchiseptica RB50] Length = 139 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP------- 47 MSLL++F A + + SQ+ N+ NAD+ Y R + ++P Sbjct: 1 MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPPGQAFG 60 Query: 48 ---ENVTVVTQRSENKNM 62 V V + Sbjct: 61 QEIGGVRVAGVVEDQSPF 78 Score = 38.1 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475 + Y N V+ E +I +SY + +++ + ML+TL Sbjct: 92 QGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTL 134 >gi|302670715|ref|YP_003830675.1| flagellar basal-body rod protein FlgB [Butyrivibrio proteoclasticus B316] gi|302395188|gb|ADL34093.1| flagellar basal-body rod protein FlgB [Butyrivibrio proteoclasticus B316] Length = 131 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 9/24 (37%) Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45 I NI N D Y R+D Sbjct: 25 EVIANNIANVDTPGYKRQDLNFED 48 >gi|17989433|ref|NP_542066.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 1 str. 16M] gi|62317101|ref|YP_222954.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 1 str. 9-941] gi|83269093|ref|YP_418384.1| flagellar basal body rod protein FlgC [Brucella melitensis biovar Abortus 2308] gi|163844344|ref|YP_001621999.1| flagellar basal body rod protein FlgC [Brucella suis ATCC 23445] gi|189022366|ref|YP_001932107.1| flagellar basal body rod protein FlgC [Brucella abortus S19] gi|225628623|ref|ZP_03786657.1| flagellar basal-body rod protein FlgC [Brucella ceti str. Cudo] gi|225686010|ref|YP_002733982.1| flagellar basal body rod protein FlgC [Brucella melitensis ATCC 23457] gi|237816663|ref|ZP_04595655.1| flagellar basal-body rod protein FlgC [Brucella abortus str. 2308 A] gi|254691414|ref|ZP_05154668.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 6 str. 870] gi|254695288|ref|ZP_05157116.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 3 str. Tulya] gi|254698386|ref|ZP_05160214.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 2 str. 86/8/59] gi|254699459|ref|ZP_05161287.1| flagellar basal body rod protein FlgC [Brucella suis bv. 5 str. 513] gi|254706294|ref|ZP_05168122.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis M163/99/10] gi|254711412|ref|ZP_05173223.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis B2/94] gi|254712011|ref|ZP_05173822.1| flagellar basal body rod protein FlgC [Brucella ceti M644/93/1] gi|254715080|ref|ZP_05176891.1| flagellar basal body rod protein FlgC [Brucella ceti M13/05/1] gi|256014940|ref|YP_003104949.1| flagellar basal body rod protein [Brucella microti CCM 4915] gi|256029958|ref|ZP_05443572.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis M292/94/1] gi|256043071|ref|ZP_05446015.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 1 str. Rev.1] gi|256059610|ref|ZP_05449808.1| flagellar basal body rod protein FlgC [Brucella neotomae 5K33] gi|256111945|ref|ZP_05452896.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 3 str. Ether] gi|256252926|ref|ZP_05458462.1| flagellar basal body rod protein FlgC [Brucella ceti B1/94] gi|256256600|ref|ZP_05462136.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 9 str. C68] gi|256262867|ref|ZP_05465399.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|260544339|ref|ZP_05820160.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260564301|ref|ZP_05834786.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260757028|ref|ZP_05869376.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 6 str. 870] gi|260762844|ref|ZP_05875176.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 2 str. 86/8/59] gi|260882838|ref|ZP_05894452.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 9 str. C68] gi|261215657|ref|ZP_05929938.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 3 str. Tulya] gi|261216790|ref|ZP_05931071.1| flagellar basal-body rod protein FlgC [Brucella ceti M13/05/1] gi|261220017|ref|ZP_05934298.1| flagellar basal-body rod protein FlgC [Brucella ceti B1/94] gi|261313738|ref|ZP_05952935.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis M163/99/10] gi|261319020|ref|ZP_05958217.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis B2/94] gi|261319657|ref|ZP_05958854.1| flagellar basal-body rod protein FlgC [Brucella ceti M644/93/1] gi|261323579|ref|ZP_05962776.1| flagellar basal-body rod protein FlgC [Brucella neotomae 5K33] gi|261749910|ref|ZP_05993619.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 5 str. 513] gi|265986977|ref|ZP_06099534.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis M292/94/1] gi|265989509|ref|ZP_06102066.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 1 str. Rev.1] gi|265993392|ref|ZP_06105949.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 3 str. Ether] gi|294853173|ref|ZP_06793845.1| flagellar basal-body rod protein FlgC [Brucella sp. NVSL 07-0026] gi|297249956|ref|ZP_06933657.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 5 str. B3196] gi|17985310|gb|AAL54330.1| flagellar basal-body rod protein flgc [Brucella melitensis bv. 1 str. 16M] gi|62197294|gb|AAX75593.1| FlgC, flagellar basal-body rod rotein FlgC [Brucella abortus bv. 1 str. 9-941] gi|82939367|emb|CAJ12315.1| Flagellar basal body rod protein:Flagellar basal-body rod protein FlgC [Brucella melitensis biovar Abortus 2308] gi|163675067|gb|ABY39177.1| flagellar basal-body rod protein FlgC [Brucella suis ATCC 23445] gi|189020940|gb|ACD73661.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225616469|gb|EEH13517.1| flagellar basal-body rod protein FlgC [Brucella ceti str. Cudo] gi|225642115|gb|ACO02028.1| flagellar basal-body rod protein FlgC [Brucella melitensis ATCC 23457] gi|237787476|gb|EEP61692.1| flagellar basal-body rod protein FlgC [Brucella abortus str. 2308 A] gi|255997600|gb|ACU49287.1| flagellar basal body rod protein [Brucella microti CCM 4915] gi|260097610|gb|EEW81484.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260151944|gb|EEW87037.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260673265|gb|EEX60086.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 2 str. 86/8/59] gi|260677136|gb|EEX63957.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 6 str. 870] gi|260872366|gb|EEX79435.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 9 str. C68] gi|260917264|gb|EEX84125.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 3 str. Tulya] gi|260918601|gb|EEX85254.1| flagellar basal-body rod protein FlgC [Brucella ceti B1/94] gi|260921879|gb|EEX88447.1| flagellar basal-body rod protein FlgC [Brucella ceti M13/05/1] gi|261292347|gb|EEX95843.1| flagellar basal-body rod protein FlgC [Brucella ceti M644/93/1] gi|261298243|gb|EEY01740.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis B2/94] gi|261299559|gb|EEY03056.1| flagellar basal-body rod protein FlgC [Brucella neotomae 5K33] gi|261302764|gb|EEY06261.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis M163/99/10] gi|261739663|gb|EEY27589.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 5 str. 513] gi|262764262|gb|EEZ10294.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 3 str. Ether] gi|263000178|gb|EEZ12868.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 1 str. Rev.1] gi|263092702|gb|EEZ16911.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|264659174|gb|EEZ29435.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis M292/94/1] gi|294818828|gb|EFG35828.1| flagellar basal-body rod protein FlgC [Brucella sp. NVSL 07-0026] gi|297173825|gb|EFH33189.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 5 str. B3196] gi|326410333|gb|ADZ67397.1| flagellar basal body rod protein FlgC [Brucella melitensis M28] gi|326553625|gb|ADZ88264.1| flagellar basal body rod protein FlgC [Brucella melitensis M5-90] Length = 140 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49 MS L + A + + S + + NI N AD Y R+ T + Sbjct: 1 MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTARTADTDPYRRKTVSFRTELEQG 60 Query: 50 VTVVTQRSE 58 R Sbjct: 61 TGAAEVRVA 69 >gi|119775452|ref|YP_928192.1| flagellar basal body rod protein FlgC [Shewanella amazonensis SB2B] gi|119767952|gb|ABM00523.1| flagellar basal-body rod protein FlgC [Shewanella amazonensis SB2B] Length = 137 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 MSL +FN + + + S + + NI NAD Sbjct: 1 MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 32 Score = 36.9 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM-LQTL 475 VN+ EE++ +I +SY ++ ++ M +QTL Sbjct: 98 NVNVMEEMADMISASRSYQMNVQVADTAKSMLMQTL 133 >gi|255028363|ref|ZP_05300314.1| flagellar basal body rod protein FlgG [Listeria monocytogenes LO28] Length = 217 Score = 45.0 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 16/210 (7%), Positives = 41/210 (19%), Gaps = 15/210 (7%) Query: 6 VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55 N Q N+ NA + R P V T Sbjct: 3 GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62 Query: 56 RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110 + + S+ R F + Sbjct: 63 DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122 Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170 + + L + + + + A+ + + + Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182 Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200 ++V D + + + + ++ + Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQKW 212 >gi|228984828|ref|ZP_04145000.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775026|gb|EEM23420.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 137 Score = 45.0 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50 >gi|297585403|ref|YP_003701183.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143860|gb|ADI00618.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 277 Score = 45.0 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 20/203 (9%), Positives = 54/203 (26%), Gaps = 10/203 (4%) Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334 R + N D E + G D + Sbjct: 79 TPNFRQGDLMETTNSTDIALLQGETPMDEDSGLPGMLAFQIQNDDGDIRYTRNGDFTVDS 138 Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394 + + + + ++ F N D + + I DP + Sbjct: 139 DGFLTMGTGHYVLDTDGAPIEVGNEDFRVNQNGEIFTDDADEVFLGQIDIMLIPDPGLLV 198 Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454 L Y + ++ + + V + + Y V+ + ++ ++ Sbjct: 199 KEGSGFLRY----------DGDEAIASAIGNDDVLYQLQQGYLERSNVDAGQTMTQMMAA 248 Query: 455 EQSYNISNKLIMFTDKMLQTLLE 477 +++ + K++ D+ L+ + Sbjct: 249 LRNFEANQKVLQAYDQSLERAVN 271 Score = 43.1 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 5/35 (14%), Positives = 11/35 (31%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37 +L A + + + NI N + + Sbjct: 1 MLRGLYTAGAGMISQQRNQEMLSNNIANVNTPGFK 35 >gi|24374760|ref|NP_718803.1| flagellar basal body rod protein FlgC [Shewanella oneidensis MR-1] gi|24349426|gb|AAN56247.1|AE015762_4 flagellar basal-body rod protein FlgC [Shewanella oneidensis MR-1] Length = 138 Score = 45.0 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32 M L +F+ A + + S + + NI NAD Sbjct: 1 MGLFNIFDVAGSGMSAQSLRLNTTASNIANAD 32 Score = 41.2 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I +SY ++ ++ MLQ L Sbjct: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136 >gi|37679148|ref|NP_933757.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|320157108|ref|YP_004189487.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] gi|37197890|dbj|BAC93728.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|319932420|gb|ADV87284.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] Length = 249 Score = 45.0 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60 + A + Q N+ N + R D S + Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGLPTRVFSMT 59 Query: 61 -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 N + + + + + + + L+ Sbjct: 60 ERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLL 113 Query: 116 KNLSE 120 N S Sbjct: 114 SNASG 118 Score = 40.8 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478 I VN E++ LI +++ + + K++ ++M +LL Sbjct: 198 QIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDKSSDSLLRM 248 >gi|311694359|gb|ADP97232.1| flagellar basal-body rod protein FlgC-like protein [marine bacterium HP15] Length = 149 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33 MSL ++F+ A + S + + NI NA+ Sbjct: 1 MSLGSIFDIAGSGMTAQSLRLNTTASNIANAET 33 Score = 37.7 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 21/36 (58%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 VN+ EE++ ++ +S+ ++ ++ M+Q +L Sbjct: 109 NVNVVEEMADMMSSSRSFQMNVDVMNTAKSMMQRIL 144 >gi|256833243|ref|YP_003161970.1| flagellar basal body rod protein [Jonesia denitrificans DSM 20603] gi|256686774|gb|ACV09667.1| flagellar basal body rod protein [Jonesia denitrificans DSM 20603] Length = 134 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 4/34 (11%), Positives = 10/34 (29%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34 M+ A + ++ N+ N + Sbjct: 1 MTTFGAIGIASTGLTVNRKWLDAVSDNLANVNTV 34 >gi|226950051|ref|YP_002805142.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226842618|gb|ACO85284.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 255 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344 N++DE+ + + + F + G Sbjct: 69 SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128 Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404 + + + + VA N +L + Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188 Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 N Q + + ++ VN+ E+ ++ +S+ + K+ Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236 Query: 465 IMFTDKMLQTLLE 477 + D+ L + Sbjct: 237 VQSIDETLGKTVN 249 Score = 44.6 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + + +I N+ NA Y + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 I N ++ + F ++ + Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 Y N S + + A V D + ++ Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166 Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221 + + ++ ND K + Q + + + + + V N ++ T Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226 Query: 222 S 222 Sbjct: 227 M 227 >gi|261420741|ref|YP_003254423.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768411|ref|YP_004133912.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377198|gb|ACX79941.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113277|gb|ADU95769.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 276 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 6/161 (3%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + N+ NA+ Y ++ R E++ + Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYK---ADAAAMRAFPELLMSRLEDQPI 57 Query: 63 FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 A + IG + L D I L D + + Sbjct: 58 PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI-ALVDGQVPVDRASGQ 116 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + N + V+ + +E + Sbjct: 117 RGALFFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWYVLD 157 Score = 42.7 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + + + N VA TL++ Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFSVRDDGTIIDENGTATRLGVAFAANPQTLVK 201 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 RS + L V + + + V+++ ++ L+ +++ + Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRTFEANQ 255 Query: 463 KLIMFTDKMLQTLLE 477 K++ D+ L + Sbjct: 256 KIVQAYDRSLDKAVN 270 >gi|221069321|ref|ZP_03545426.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] gi|220714344|gb|EED69712.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] Length = 246 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 34/141 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + N A+Q+ A + N+ NA + + P T R Sbjct: 1 MDRIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGTGAGTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A R L + + + S E N + Sbjct: 61 TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + + ++ + Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141 >gi|91794994|ref|YP_564645.1| flagellar basal-body rod FlgF [Shewanella denitrificans OS217] gi|91716996|gb|ABE56922.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217] Length = 244 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 50/205 (24%), Gaps = 4/205 (1%) Query: 7 FNKAQNICNNASQQFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFD 64 A + + + + N+ NA+ + + P V Sbjct: 5 LYTAASGASRIMEAQSIRANNLANAETTGFKADLERVKSMALP-GVEASLSTRVLVQTQS 63 Query: 65 KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124 S + + + E +LG Sbjct: 64 NGFSQQSGEMNHTGRNLDMAIRDRGLFTVMVDGGEAYTRAGAMIADAEGQLTVNGRPVLG 123 Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADK-EIELEISNLRRFLSELTVVNDAIKFKTAS 183 E F + + A+ + + + L+ELT D + + A+ Sbjct: 124 IDGPMVLPEHKDLFVGEDGTISVLPAEGGVIQEVGRLKMVNPELNELTKGADGLLYPIAA 183 Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS 208 A D Q D + S + +S Sbjct: 184 GVLAADDGVQVDSGYLESSNVQAVS 208 >gi|297531535|ref|YP_003672810.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254787|gb|ADI28233.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 276 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 5/104 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 +L A + ++ + N+ NA+ Y P ++ R E++ + Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFP---ELLMSRLEDQPI 57 Query: 63 FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104 A + IG + L D I Sbjct: 58 PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI 101 Score = 43.1 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%) Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402 + + + + + N VA TL++ Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFSVRDDGTIIDENGTATRLGVAFAANPQTLVK 201 Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462 RS + L V + + + V+++ ++ L+ +++ + Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRTFEANQ 255 Query: 463 KLIMFTDKMLQTLLE 477 K++ D+ L + Sbjct: 256 KIVQAYDRSLDKAVN 270 >gi|331217535|ref|XP_003321446.1| hypothetical protein PGTG_02488 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300436|gb|EFP77027.1| hypothetical protein PGTG_02488 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 2239 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 107/391 (27%), Gaps = 12/391 (3%) Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE-SYSKNLSEDILGKT 126 ++ L L + +S++ ++ S + S+ Sbjct: 506 TTDTNQSSASDSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSA 565 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + +E+ T + + A+ + + S Sbjct: 566 GVSILDELSTARTTDTNQSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSAS 625 Query: 187 AHDFLDQ--RDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243 D D L + S+ +G + T+ + ++ S Sbjct: 626 DSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQQDLPAQTSDADQSSAGVSILDELST 685 Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303 T+++NP+ + ++ + + + Q +P ++ + S Sbjct: 686 ARTTDTNPLSASAPPADTLSSNSSQQTEKTSHPQ---KDLPAQTTDTNQSSASDSLSGDA 742 Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 +SE+ L + + + + Q + S L + + Sbjct: 743 PLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSAGVSILDELSTARTTDTN 802 Query: 364 NVKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421 ++++ + + TN + + G L N S + Sbjct: 803 QSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSASDSLSGELGSNASQQPNT 862 Query: 422 ---HMKSQVVFNHISESYSNTVGVNLQEELS 449 Q + S++ ++ GV++ +ELS Sbjct: 863 EKTSSPQQDLPAQTSDADQSSAGVSILDELS 893 Score = 39.2 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 37/391 (9%), Positives = 101/391 (25%), Gaps = 11/391 (2%) Query: 68 HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-LESYSKNLSEDILGKT 126 +++ L L + +S++ ++ S + S+ Sbjct: 616 TTNTNQSSASDSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQQDLPAQTSDADQSSA 675 Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186 + +E+ T + AD + + S Sbjct: 676 GVSILDELSTARTTDTNPLSASAPPADTLSSNSSQQTEKTSHPQKDLPAQTTDTNQSSAS 735 Query: 187 AHDFLDQ--RDVLLQKISEIIG---ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241 D D L + S+ +G +T ++ + + I E Sbjct: 736 DSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSAGVSILDELST 795 Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 + T + + + S+ S + + Q+ + +GS Sbjct: 796 ARTTDTNQSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSASDSLSGELGSN 855 Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 + + P + + A + I + + ++ + L + Sbjct: 856 ASQQPNTEKTSSPQQDLPAQTSDADQSSAGVSILDELS--TARTTDTNPLSASAPPADTL 913 Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFD--PVAGINTNVTLLEYARNSIGW-LEKNRSDS 418 N + ++ + L + + L +++ Sbjct: 914 SSNSSQQTEKTSHPQKRLAGPKPPIQTNHRASDSLSGDAPLADTLSSESSQQLGHEAANT 973 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELS 449 + + S++ ++ GV++ +ELS Sbjct: 974 EKTSSPQKDLPAQTSDADQSSAGVSILDELS 1004 >gi|225850273|ref|YP_002730507.1| flagellar basal-body rod protein FlgC [Persephonella marina EX-H1] gi|225645322|gb|ACO03508.1| flagellar basal-body rod protein FlgC [Persephonella marina EX-H1] Length = 136 Score = 45.0 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENAD---NKN---YVRRDTMTTIS 46 + + + N+ N + ++ Y R+ + Sbjct: 2 IFKGLEVSVTGMAAQRIRIDITSSNLANVNSTRTEDGQPYRRKVPVFQAV 51 >gi|149183418|ref|ZP_01861851.1| flagellar basal-body rod protein [Bacillus sp. SG-1] gi|148848863|gb|EDL63080.1| flagellar basal-body rod protein [Bacillus sp. SG-1] Length = 280 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 25/268 (9%), Positives = 60/268 (22%), Gaps = 36/268 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47 +L F + + ++ + N+ NA+ Y + P Sbjct: 1 MLRGFYTVASGMLSQQRKTEMLSNNLSNANTPGYKADRSSMKAFPEMLLALQGQQQNIPT 60 Query: 48 ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM------------------ 89 +N + + + V + Q LQ E L ++ Sbjct: 61 QNGLSLPISRQVGGLNSGVYMQETIPAFMQGDLQETERLTDIALVDGNIPADPETGLPGG 120 Query: 90 --MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-AREVQ 146 + + + Y + S + T + NF + + Sbjct: 121 VFFTLEGADGAPRYTRNGNFTLDGQGYLTSASGLYVLDTEGQRIQLPSDNFKIAEDGRIL 180 Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206 + + N R E + + + + S + Sbjct: 181 VDEVETGRLGTGFTVNANRLAKEGDGLFRTEDNEPLADAYNSGATFNMQQGFIERSNVDT 240 Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRD 234 T+ + ++ L Sbjct: 241 ARTMTDMMTAYRAFEANQKILQAYDRSM 268 Score = 39.6 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 3/59 (5%), Positives = 23/59 (38%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + ++ + + V+ ++ ++ +++ + K++ D+ ++ + Sbjct: 215 PLADAYNSGATFNMQQGFIERSNVDTARTMTDMMTAYRAFEANQKILQAYDRSMEKAVN 273 >gi|170725956|ref|YP_001759982.1| flagellar basal body rod protein FlgF [Shewanella woodyi ATCC 51908] gi|169811303|gb|ACA85887.1| flagellar basal-body rod protein FlgF [Shewanella woodyi ATCC 51908] Length = 247 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 10/129 (7%), Positives = 27/129 (20%), Gaps = 12/129 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56 + + A + A N+ NA+ + R Sbjct: 1 MDKLLYVAMSGAKQNMNALAVRANNLANANTDGFKADMEQARSMQAFGEGLPTRVFAMTE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + N + + + A++ + L + Sbjct: 61 NPSANFSSGPIKTTGRDLDIAINGSGWIAVQGADGGEA------YTRSGSLSFDTSGLLR 114 Query: 117 NLSEDILGK 125 N + + Sbjct: 115 NDRGNPIMG 123 Score = 42.3 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 22/50 (44%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 + VN +E+ LI +++ + + K++ ++M Q ++ Sbjct: 196 AVESGAVEGSNVNAVDEMVSLIDIQRQFEMQVKMMKTAEEMDQASSSLMR 245 >gi|195953934|ref|YP_002122224.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] gi|195933546|gb|ACG58246.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] Length = 253 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 5/27 (18%), Positives = 12/27 (44%) Query: 12 NICNNASQQFASIVRNIENADNKNYVR 38 + + ++ + NI NAD + + Sbjct: 13 SGMSLEQRRLDVVANNIANADTPGFKK 39 >gi|213025696|ref|ZP_03340143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 93 Score = 45.0 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 4/31 (12%), Positives = 8/31 (25%) Query: 16 NASQQFASIVRNIENADNKNYVRRDTMTTIS 46 I N+ N + R+ + Sbjct: 1 AQQTNMDVIANNLANVSTNGFKRQRAVFEDL 31 >gi|306846280|ref|ZP_07478841.1| flagellar basal-body rod protein FlgC [Brucella sp. BO1] gi|306273275|gb|EFM55144.1| flagellar basal-body rod protein FlgC [Brucella sp. BO1] Length = 140 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49 MS L + A + + S + I NI NA + Y R+ T + Sbjct: 1 MSSDALQSTLKIAASGLSAQSTRLRIISENIANAQSTARTADADPYRRKTVSFRTELEQG 60 Query: 50 VTVVTQRSE 58 R Sbjct: 61 TGAAEVRVA 69 >gi|255523680|ref|ZP_05390646.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] gi|255512549|gb|EET88823.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] Length = 259 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 34/149 (22%), Gaps = 24/149 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43 ++ A + + I N+ NA + + Sbjct: 1 MIRSLYTAVSGMITQEAKQDVITNNLANATTVGFKGDNLAVKKFDDVLLQNYDKIVGGKN 60 Query: 44 --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 + + N + + + A + F A++ + N Sbjct: 61 VRNVIGSISLGSKIDAVNTDFTQGNIESTDKATDFAIQGKGFFAVQRN---NGVDNGQYY 117 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN 130 ++ N S D + + N Sbjct: 118 TRDGHFHVNINGILVNDSGDTVLGRNLQN 146 >gi|308068650|ref|YP_003870255.1| flagellar basal-body rod protein flgC [Paenibacillus polymyxa E681] gi|305857929|gb|ADM69717.1| Flagellar basal-body rod protein flgC [Paenibacillus polymyxa E681] Length = 150 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 3/89 (3%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 M + F+ + + + I NI NA+ R + N+ Sbjct: 1 MKINNGFDISASALTAQRLRMDVISSNIANAET---TRAKVENGQAVPYRRKTVVLEPNQ 57 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM 89 + F VL A ++E Sbjct: 58 SGFADVLKAQMEGSSTSAAGVKVSQIQED 86 >gi|322378390|ref|ZP_08052845.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] gi|322380258|ref|ZP_08054478.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321147295|gb|EFX41975.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321149203|gb|EFX43648.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] Length = 286 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 6/43 (13%), Positives = 15/43 (34%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 + + + A + + I N+ N + + R D + Sbjct: 16 MTSGYYAATGGMVSEFNKLDQISNNLANLNTPGFKRDDVVVGD 58 >gi|34498342|ref|NP_902557.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] gi|34104196|gb|AAQ60555.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] Length = 136 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 14/69 (20%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMTTISP------- 47 MSL +FN + + + S + + N+ NA + Y R + T P Sbjct: 1 MSLSNLFNISGSALSAQSMRLNVVASNLANAESATSSTGQPYKGRHVVFTAVPVDAAQPQ 60 Query: 48 -ENVTVVTQ 55 V V + Sbjct: 61 VAGVRVTSV 69 Score = 40.0 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 21/38 (55%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 VN+ EE++ +I ++Y + +++ +LQ L+ Sbjct: 97 NVNVVEEMADMIAASRAYQNNVEMMNTAKSLLQKTLQL 134 >gi|28211310|ref|NP_782254.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203750|gb|AAO36191.1| flagellar hook-basal body complex protein [Clostridium tetani E88] Length = 260 Score = 45.0 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 14/182 (7%), Positives = 31/182 (17%), Gaps = 24/182 (13%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44 ++ A + + + N+ N + + Sbjct: 1 MIRGLYTAVSGMITEEAKQNVVTNNLANVTTPGFKSDNLSVKQFDDVLLYNYDKKVGNKN 60 Query: 45 ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 N +L A + F ++ N Sbjct: 61 VRHDLGGLSMGSKIDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVER---EGQGGNERLY 117 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161 + + N S + D NT + K Sbjct: 118 TRNGHFYVNNRGFLVNDSGYNVIGRNNDTGAVEPIRLNTENFTLTKEGNILVDGNTTYTL 177 Query: 162 NL 163 + Sbjct: 178 QV 179 Score = 38.5 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 1/181 (0%) Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357 I + + A K +G + + R Sbjct: 74 IDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVEREGQGGNERLYTRNGHFYVNNRGFLVN 133 Query: 358 SKKFLWNV-KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416 + N G + I ++F + + NT TL + L K Sbjct: 134 DSGYNVIGRNNDTGAVEPIRLNTENFTLTKEGNILVDGNTTYTLQVADFQNYNDLRKVGH 193 Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 D++ + + ++ VN E+ ++ V +++ + K+I D L + Sbjct: 194 DAYTGNNAVNSTDYIVKQNTLEKSNVNTIREMIEMMTVMRTFETNQKIIQSIDDTLGKAV 253 Query: 477 E 477 Sbjct: 254 N 254 >gi|320530444|ref|ZP_08031502.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] gi|320137277|gb|EFW29201.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] Length = 266 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 18/59 (30%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I + ++ E+ LI + Y ++ + D +L + Sbjct: 202 PQEGARPTQATGTIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVN 260 Score = 37.7 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 13/36 (36%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38 + A + ++ I N+ NA N + R Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANASNTGFKR 36 >gi|310641541|ref|YP_003946299.1| flagellar basal-body rod protein flgc [Paenibacillus polymyxa SC2] gi|309246491|gb|ADO56058.1| Flagellar basal-body rod protein FlgC [Paenibacillus polymyxa SC2] Length = 150 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 10/59 (16%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPEN 49 M + F+ + + + I NI NA+ Y R+ + + Sbjct: 1 MKINNGFDISASALTAQRLRMDVISSNIANAETTRAKVENGQAIPYRRKTVVLEPNQSG 59 >gi|149184208|ref|ZP_01862526.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] gi|148831528|gb|EDL49961.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] Length = 246 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 12/129 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----RRDTMTTISPENVTVVTQRS 57 + + + A + + I N+ NA+ + +R P + Sbjct: 1 MDRLIHTALSGMRASMDSQRVIASNMANANTLGFRAELLDQRPVTIEGQPNEARAMQIAR 60 Query: 58 ENK-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 +M + + Q+ A++ L S Sbjct: 61 VRGADMSSGQIIETGRNLDVAVTTQALMAVQ------AEDGTEAYTRRGDLSVSSTGLLV 114 Query: 117 NLSEDILGK 125 N + Sbjct: 115 NGEGRPVLG 123 Score = 38.1 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 16/41 (39%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + V E L +I+ ++ + + K++ ++ Sbjct: 195 SLKTGALEQSNVKTTEVLVEMIEAQRLFAMRTKIVSTAKEI 235 >gi|154175290|ref|YP_001408541.1| flagellar basal body rod protein FlgC [Campylobacter curvus 525.92] gi|112803036|gb|EAU00380.1| flagellar basal-body rod protein FlgC [Campylobacter curvus 525.92] Length = 167 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45 MS L F+ + + + I NI NA + Y R++ + Sbjct: 1 MSYLNDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRQEVIFKA 51 >gi|264676571|ref|YP_003276477.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] gi|262207083|gb|ACY31181.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] Length = 246 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 34/141 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + N A+Q+ A + N+ NA + + P + R Sbjct: 1 MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A R L + + + S E N + Sbjct: 61 TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + + ++ + Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141 >gi|304310785|ref|YP_003810383.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1] gi|301796518|emb|CBL44726.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1] Length = 145 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 14/143 (9%), Positives = 36/143 (25%) Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 ++ + + + + + G Sbjct: 1 MSLSSVFDIAGSGMSAQTVRLNTTSSNIANAESVASSVDKTYRARHPVFMAQYTAALGNR 60 Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455 L A + + S + + Y VN+ EE++ +I Sbjct: 61 PTDPLTGKANAGVDVVGIVESQAPLQLRYEPDHPYADEKGYVAYPNVNVVEEMTNMISAS 120 Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478 +S+ + ++ +ML +L Sbjct: 121 RSFQTNADVMNSAKQMLSAVLNL 143 Score = 44.3 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENA 31 MSL +VF+ A + + + + + NI NA Sbjct: 1 MSLSSVFDIAGSGMSAQTVRLNTTSSNIANA 31 >gi|330445349|ref|ZP_08309001.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489540|dbj|GAA03498.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 7/130 (5%), Positives = 26/130 (20%), Gaps = 12/130 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQ----R 56 + A + N+ N + + + + + Sbjct: 1 MDRALYLAMSGAKQDMYGMQVHANNLANVNTTGFRADLQQARSMQAYGEGMPSRVFSMAE 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + + + A+ + + L+ + Sbjct: 61 RPGNDFAQGSVINTGRDLDVAIQGDGWLAVMDAKGQEA------YTRAGHLKIDQTGMLQ 114 Query: 117 NLSEDILGKT 126 N + +L Sbjct: 115 NSNGQLLLGQ 124 Score = 40.0 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 21/41 (51%) Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 +++ VN E++ +I +++ + + KL+ ++M Sbjct: 198 TLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEEM 238 >gi|322432976|ref|YP_004210225.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] gi|321165203|gb|ADW70907.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] Length = 246 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 9/129 (6%), Positives = 30/129 (23%), Gaps = 6/129 (4%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQR 56 + + A + +I N+ N+ + R T + + Sbjct: 1 MDSGLYAACTALMARTDALDTIANNLANSSTGGFRARHTTFSSVLAGSGRPLASQLNEAT 60 Query: 57 SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116 + + L ++ + + + L+ S + Sbjct: 61 NSYGLLGGSHLDMQQGSLARTGSDLDVGIDGPGFLTVKTASGNAYTRNGSLQVSTQGQLI 120 Query: 117 NLSEDILGK 125 + + + Sbjct: 121 TATGEPVLG 129 >gi|302383955|ref|YP_003819778.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] gi|302194583|gb|ADL02155.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] Length = 245 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 9/166 (5%), Positives = 29/166 (17%), Gaps = 4/166 (2%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61 + + ++ NI NA+ + + + R Sbjct: 1 MENAAYIGLSRQMTLRRELDIAANNIANAETTGFKVEQLLLGTEVGQRARNDAVRPGASF 60 Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNL 118 + D + ++ + + Sbjct: 61 VLDNGVGRDFGQGALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQLVTK 120 Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164 S + + + + A + + A Sbjct: 121 SGLPVLGDGGPIVVDPARGALSVAEDGTISQGGAALGTLSLARFDN 166 Score = 39.6 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 47/170 (27%), Gaps = 3/170 (1%) Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364 + + + + + Y + +F D Sbjct: 64 NGVGRDFGQGALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQLVTKSGL 123 Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424 G P +++ + + G TL +++ L K+ + Sbjct: 124 PVLGDGGPIVVDPARGALSVAEDGTISQGGAALGTLSLARFDNLAVLSKDGDGLYRNASN 183 Query: 425 S---QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 + + + VN E++ LI++ ++Y + K+I + Sbjct: 184 APALDATGVQVRQGMLEGSNVNTLVEITNLIEITRAYERATKMIENVQDL 233 >gi|116250476|ref|YP_766314.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. viciae 3841] gi|115255124|emb|CAK06198.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 244 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 8/154 (5%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56 + + + + ++ +I N+ N + + + V Sbjct: 1 MQSGLYVSLSSQMALEKRLTTIADNMANVNTTGFRATEVKFDEMVAATRNKLNTKVAFVS 60 Query: 57 SENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 N + + L + + ++ AL + T + S+ Y Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGQVLTRDGRFTIKDTGELVSIRGY 120 Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 + + E V + ++I Sbjct: 121 PVLDAGGAPIQLNTTGGEPAVGTDGIIYQGGRQI 154 >gi|120554034|ref|YP_958385.1| flagellar basal body rod protein FlgF [Marinobacter aquaeolei VT8] gi|120323883|gb|ABM18198.1| flagellar basal-body rod protein FlgF [Marinobacter aquaeolei VT8] Length = 250 Score = 44.6 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 9/137 (6%), Positives = 30/137 (21%), Gaps = 16/137 (11%) Query: 3 LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNYV------RRDTMTTISPENVTVVT 54 + + A + N+ N + + R + Sbjct: 1 MDKALYIGMSG--AKQNMLAQRAHANNLANVNTTGFKKDFAQARSMPVFGEHHPTRAYAM 58 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114 ++ L + + A++ + + L+ + Sbjct: 59 TERPGTDLSPGALMETGRKLDVAVDGGGWLAVQNNLGEE------VFTRTGSLQVDVNGL 112 Query: 115 SKNLSEDILGKTVIDNA 131 + S +++ A Sbjct: 113 VRLASGELVLGNGGPVA 129 >gi|317153716|ref|YP_004121764.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis Aspo-2] gi|316943967|gb|ADU63018.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis Aspo-2] Length = 145 Score = 44.6 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 13/76 (17%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54 M + + + I N+ N + Y R+ +P Sbjct: 1 MDFMTALDIGASGLKAQRATLNVISMNMANMRTTKTLEGGPYQRKSVSFESTP------- 53 Query: 55 QRSENKNMFDKVLHAH 70 S + L+ Sbjct: 54 VYSPFDEAMNNQLNRE 69 Score = 41.6 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 17/36 (47%) Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 N+ EE++ ++ + Y + + I +M L+ Sbjct: 108 NVVEEMTNMMNATRGYEANVQTIESVKQMFNKALQI 143 >gi|196044999|ref|ZP_03112232.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB108] gi|225863603|ref|YP_002748981.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB102] gi|229183936|ref|ZP_04311152.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BGSC 6E1] gi|196024001|gb|EDX62675.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB108] gi|225788684|gb|ACO28901.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB102] gi|228599588|gb|EEK57192.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BGSC 6E1] gi|324325762|gb|ADY21022.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 137 Score = 44.6 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 + N + + A + NI NA+ Y RR + + Sbjct: 1 MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGANLYERRSVVLESN 50 Score = 36.9 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 V++ E++ ++ ++ Y + ++ KML LE + Sbjct: 97 NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136 >gi|319790422|ref|YP_004152055.1| flagellar basal-body rod protein FlgC [Thermovibrio ammonificans HB-1] gi|317114924|gb|ADU97414.1| flagellar basal-body rod protein FlgC [Thermovibrio ammonificans HB-1] Length = 135 Score = 44.6 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 5/61 (8%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-----YVRRDTMTTISPENVTVVTQRS 57 + + + N+ NA++ + Y RR + + V V Sbjct: 2 IFKGLEVSVTGMLAQRVRMDVAASNLANANSVDDNGQPYRRRVPIFEAVLDEVNGVKTYR 61 Query: 58 E 58 Sbjct: 62 V 62 >gi|23499914|ref|NP_699354.1| flagellar basal body rod protein FlgC [Brucella suis 1330] gi|23463491|gb|AAN33359.1| flagellar basal-body rod protein FlgC [Brucella suis 1330] Length = 140 Score = 44.6 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%) Query: 1 MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49 MS L + A + + S + + NI N AD Y R+ T + Sbjct: 1 MSSDALQSTLKIAASGLSAQSTRLCIVSENIANAQSTAKTADTDPYRRKTVSFRTELEQG 60 Query: 50 VTVVTQRSE 58 R Sbjct: 61 TGAAEVRVA 69 >gi|329898292|ref|ZP_08272375.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium IMCC3088] gi|328920857|gb|EGG28300.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium IMCC3088] Length = 124 Score = 44.6 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57 + ++F + SQ+ + +NI NAD + RD + V T + Sbjct: 1 MNSIFGVHEQALVLKSQRLQVLAKNIANADTPGFKARDVDFKQVLAAQAGFGSLVTTHKR 60 Query: 58 ENKNMFDKV 66 K Sbjct: 61 HLKTALSNQ 69 >gi|94264091|ref|ZP_01287890.1| Flagellar basal-body rod protein FlgC [delta proteobacterium MLMS-1] gi|93455507|gb|EAT05697.1| Flagellar basal-body rod protein FlgC [delta proteobacterium MLMS-1] Length = 144 Score = 44.6 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47 M +L N + + + N+ NA+ + Y + + P Sbjct: 1 MDILTAMNISGSALKAERSRLNIASMNMANANTTRTVEGGPYRAKSVVFEARP 53 >gi|205375362|ref|ZP_03228152.1| flagellar basal-body rod protein [Bacillus coahuilensis m4-4] Length = 270 Score = 44.6 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 10/107 (9%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTISPENVTVVT 54 +L A + ++ ++ N+ NA+ + T + Sbjct: 1 MLRGLYTAASGMIAQQRKTETLANNLANANTPGFKADQTSVRSFPEMLLMSVGQGTLPNQ 60 Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 QRS + L S + L + ++ + Sbjct: 61 QRSTIPQL--NSLQTSISTGVYVQELTPLLSQGDLFETGMKTDIGLY 105 Score = 41.2 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 61/216 (28%), Gaps = 3/216 (1%) Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324 +V +G + + + Q + V + + + + D Sbjct: 50 MSVGQGTLPNQQRSTIPQLNSLQTSISTGVYVQELTPLLSQGDLFETGMKTDIGLYDINV 109 Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 + + V+ N + +G V+ + + L N ++ Sbjct: 110 PQGGTVLYTVQGENGVSYTRNGNLTLDGNGSLVTSNGYYVLDTNGNTITLGNEDFTVNDQ 169 Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVG 441 I G+ +++ + + + + + + Sbjct: 170 GEIIQNGQGVAKLGVAYAADASTLRKIGTDLYESDGQLQNAYNVEGLQFQTVQGFLENSN 229 Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 VN + ++ ++ +S+ + KL+ DK L + Sbjct: 230 VNESQTMTDMMTAYRSFEANQKLLQAYDKSLDKAVN 265 >gi|299531285|ref|ZP_07044695.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] gi|298720692|gb|EFI61639.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] Length = 246 Score = 44.6 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 34/141 (24%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62 + + + N A+Q+ A + N+ NA + + P T R Sbjct: 1 MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGTGAGTRVFALEA 60 Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122 A R L + + + S E N + Sbjct: 61 TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120 Query: 123 LGKTVIDNAEEVVQNFNTSAR 143 + + ++ + Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141 >gi|313894945|ref|ZP_07828504.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976398|gb|EFR41854.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 44.6 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 18/59 (30%) Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 + I + ++ E+ LI + Y ++ + D +L + Sbjct: 202 PQEGARPTQATGTIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVN 260 Score = 37.7 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 13/36 (36%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38 + A + ++ I N+ NA N + R Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANASNTGFKR 36 >gi|254519398|ref|ZP_05131454.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] gi|226913147|gb|EEH98348.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] Length = 260 Score = 44.6 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 20/41 (48%) Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472 +++ VN+ E+ +I +++ + K++ D+ L Sbjct: 209 VTQGALEGSNVNISNEMVNMITTMRNFETNQKIVQTIDETL 249 Score = 40.8 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 35/150 (23%), Gaps = 24/150 (16%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45 ++ A + + + +I N+ NA+ + + Sbjct: 1 MIRSLYTAVSGLISLENRQNNITNNMSNANTTGFKGDNLSIKSFDEVMIQNRDKVVNGNN 60 Query: 46 ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101 S + ++ + F A++ ++ N Sbjct: 61 VVQKLGSISLGAEIDSVDTAFTQGLIKNTDKQTDFAIEGRGFFAIQR---QTNNGNEVIY 117 Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA 131 + + Y N + D + + Sbjct: 118 TRDGNFKVGNDGYLINTNSDRVLGMNKNTG 147 >gi|254502506|ref|ZP_05114657.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii DFL-11] gi|222438577|gb|EEE45256.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii DFL-11] Length = 136 Score = 44.6 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 7/52 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45 M L+ + + + + I NI NA+ + Y R+ Sbjct: 1 MDLMKSLFISASGLKAQNGRMRVIAENIANANSTARTPDEEPYRRKIPTFQS 52 Score = 41.2 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 Y V+ E + + + ++SY + +I T KMLQ ++ ++ Sbjct: 88 ENGYVLQPNVSTLVESADMREAQRSYEANLNVIETTRKMLQRTIDILR 135 >gi|328545507|ref|YP_004305616.1| flagellar basal-body rod protein FlgC [polymorphum gilvum SL003B-26A1] gi|326415248|gb|ADZ72311.1| Flagellar basal-body rod protein FlgC [Polymorphum gilvum SL003B-26A1] Length = 138 Score = 44.6 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 7/50 (14%) Query: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45 L A + + S++ + N+ NA + Y R+ Sbjct: 5 LAATLKISASGLQAQSERLRVVSENLANAQSTGKTKGADPYARKTITFES 54 Score = 36.5 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 16/31 (51%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 VNL E++ + + +SY + K++ M Sbjct: 98 NVNLLVEMADMRETNRSYEANLKMMTQARTM 128 >gi|114566383|ref|YP_753537.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337318|gb|ABI68166.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 155 Score = 44.6 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 11/82 (13%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KN-YVRRDTMTTISPENVTVV 53 M L + + + + +I N+ N + Y R+ + Sbjct: 1 MGFLNSIDTSASGLTAQRLRMDTIASNMANVETTRVDNRTGPYRRQVVVFEAR----NAS 56 Query: 54 TQRSENKNMFDKVLHAHSSAIG 75 + + ++ ++A Sbjct: 57 APKKRFQRFLEEQSQTFNAANS 78 Score = 42.7 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 15/25 (60%) Query: 441 GVNLQEELSFLIKVEQSYNISNKLI 465