RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated
protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
(480 letters)
>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 483
Score = 390 bits (1004), Expect = e-109
Identities = 163/486 (33%), Positives = 256/486 (52%), Gaps = 10/486 (2%)
Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-NVTVVTQRSEN 59
MSL + N AQ+ S+Q + + RNI NA Y RR+ P V R+++
Sbjct: 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGPAGGQVVGISRAQD 60
Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
+ + L A S+A Q L E L + +D Y SP+ +S + +L++ + +
Sbjct: 61 PALLAQRLLATSAAAAQDTLADGLERLASTVGDND-YEGSPSARLSDFQAALQTAASSPD 119
Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
L + +D A+++ + N ++ VQ RADAD EI + L L++ N+A+
Sbjct: 120 NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179
Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
TA+ DA D LDQRD LL++IS+I+G++T+ R+NNDM +YT G TLFET PR + F
Sbjct: 180 GTATGRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFETTPRTVTFTP 239
Query: 240 MNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
+YT + N ++IDGV ++ + + G + ALLQ+RD + P +Q QLDE+AR LI
Sbjct: 240 TATYTAGTTGNAVYIDGVPLTGGSGVMPLAGGSLAALLQLRDEIAPTYQAQLDEIARGLI 299
Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NPSFLRDG 354
F+E DP PGLF G G++ I VN +P LRDG
Sbjct: 300 TRFAESDPTGAAG--DPGLFTDSGAPADPAAGEAGLAGRISVNAAVDPSQGGDPWLLRDG 357
Query: 355 G-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
G + + N AG+ +N D+ + FD AG++ + +L++ A +S+ WLE+
Sbjct: 358 GINGAAYLGANTTGAAGFSTRLNALVDALSAPRTFDSAAGLSGSSSLMDLAASSLSWLEQ 417
Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
RS + + + + E+ SN GV+ +E++ L+ +EQSY S K+I D+ML
Sbjct: 418 QRSSASSEASYASALLSRADEALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLD 477
Query: 474 TLLEGV 479
+LL+ V
Sbjct: 478 SLLDAV 483
>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The
flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model.
Length = 322
Score = 139 bits (351), Expect = 2e-33
Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 24/306 (7%)
Query: 16 NASQ-QFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVT-QRSENKNMF 63
+ASQ + NI NA+ Y R+ + T P V V + +R +++ +
Sbjct: 11 SASQIALSVTSNNIANANTPGYSRQRAVLTAVPGGGQGGLQIGTGVRVTSIRRIQDQFLD 70
Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
++ A+SSA + ++ + + D + + Y++ ++L+ +KN + L
Sbjct: 71 NQYRRANSSAGYADSRASALSQIENLFNDLD--ESGLSTYLNNFFNALQELAKNPDSEAL 128
Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA- 182
+ V+++A+ + +FN ++ E+Q +R + EI+ ++ + L ++ +N I+ A
Sbjct: 129 RQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQVEAK 188
Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
S DA+D LDQRD+LL+++S++IGIS + + VYT G L + +
Sbjct: 189 SGQDANDLLDQRDLLLKELSQLIGISVSENEDGTVNVYTGSGQVLVDGGTGSST----SP 244
Query: 243 YTVTSESNPIFIDGVVVSS-----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
T + + DGV + S S GK+ LL +RD V+P Q+QLD++A+ L
Sbjct: 245 LTADTAGGKVGGDGVYLPSGSEKVTISSDSQGGKLGGLLDLRDGVLPDLQSQLDQLAKTL 304
Query: 298 IGSFSE 303
F+E
Sbjct: 305 ANEFNE 310
>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 507
Score = 85.1 bits (211), Expect = 4e-17
Identities = 88/399 (22%), Positives = 167/399 (41%), Gaps = 54/399 (13%)
Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
SL+ SKN V A+ + + FN ++ + I+ D EI++ + + S+
Sbjct: 127 SLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQ 186
Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY-TSDGT--- 225
++ +N I + + +D DQRD+LL ++S+I+ I T+ N + ++GT
Sbjct: 187 ISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIVNI-TVEYNKSGGNALEDAEGTFRI 245
Query: 226 ---------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS---SNQGSAVPKGKIK 273
TL + +N +N VT + + G VS + Q GK+K
Sbjct: 246 DILGGNGKGTLVDGKDSTVNELSVNKDDVTGLVTDLSLGGTTVSWDDTGQPVNPSSGKLK 305
Query: 274 ALLQIRDS---------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
LL++ + P N LD++A +F+E G+ DG
Sbjct: 306 GLLEMYGYMSGNGEEKGLYPEMLNDLDKLAYTFATAFNEVHKQGYGLNGSTGIDFFDGTG 365
Query: 325 DLDNKLCQGI--SETICVNPQYR---SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
D + I S+ I + S+ L DG + L N+K+
Sbjct: 366 DSTKGAAKTIKVSDDILADLNNIAAASDDGELGDGSNALN--LANLKD------------ 411
Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
F +G++T T ++ ++ IG L + +++ + +V+ + + +
Sbjct: 412 --------FKLNSGLDT-TTFDDFYQSLIGNLGVDAQEANRMAENQEVLVDQVDNRRQSV 462
Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
GV+L EE++ +IK + +YN + ++I D+ML ++ G
Sbjct: 463 SGVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIING 501
>gnl|CDD|180650 PRK06665, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 627
Score = 62.4 bits (152), Expect = 2e-10
Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 51/298 (17%)
Query: 27 NIENADNKNYVR-RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA--IGQQRLLQSF 83
NI NA K Y R R TM T P ++ L+ IGQ +QS
Sbjct: 28 NISNASTKGYSRQRVTMKTFDP--------------LYAPSLNRAEKPGQIGQGVEIQSI 73
Query: 84 EALKE--------MMSADDHYNNSPTHYISKLR-------------------DSLESYSK 116
E +++ S Y + Y+S+L DS + S
Sbjct: 74 ERIRDELLDSRIIEESGRLGYWKTKDKYLSQLEQVYNEPEDQSLRTRLDDFWDSWQDLSN 133
Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
+ V++ A+ + + + R +++IR A+ EIE+ + + L + +N+
Sbjct: 134 YPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQ 193
Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
I A + +D LD+RD+L+ K+S +I +S + ++ +++ + + +++
Sbjct: 194 IVKSQAMGDNPNDLLDRRDLLVDKLSSLIDVSIERSDPDEFMIHIGGRHLVQGNIANELD 253
Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
E + N + D + ++ + + GK+ AL+++RD+ + N+LD +A
Sbjct: 254 LEA-------NPPNEGYWDILWSANGDPALLRTGKLGALIELRDTDIRDEINELDTLA 304
Score = 37.0 bits (86), Expect = 0.011
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
GVNL EEL+ +I+ + YN S + I ++++L T++
Sbjct: 587 GVNLDEELANMIEFQHGYNASARFISVSNELLDTII 622
>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 651
Score = 54.3 bits (131), Expect = 6e-08
Identities = 61/301 (20%), Positives = 132/301 (43%), Gaps = 39/301 (12%)
Query: 27 NIENADNKNYVRRDTMTTIS----------PENVTVVT-QRSENKNMFDKVLHAHSSAIG 75
NI NA Y R+ + + + V VVT +R ++ + ++ +A +++
Sbjct: 25 NISNAATPGYSRQRVVQAEAGGQYTGSGYLGQGVNVVTVKRQYSQYLSAQLNNAQAAS-- 82
Query: 76 QQRLLQSFEALKEMMSADDHYNNSPTH----YISKLRDSLESYSKNLSEDILGKTVIDNA 131
S +S ++Y PT I+ L++ + N S+ +T++ NA
Sbjct: 83 -----SSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNA 137
Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI-KFKTASKHDAHDF 190
+ + FN + +++ ++R + ++ ++ + + ++ +ND I K +++ +D
Sbjct: 138 QTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKAESSQGQPPNDL 197
Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
LDQRD L+ ++S+++G++ + +++ V+ +G L + + TV S S+
Sbjct: 198 LDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLV------VGNQSYQLTTVPSPSD 251
Query: 251 PIFIDGVVVSSNQG--------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
P + V S++ G + LL R + QNQL +A L F+
Sbjct: 252 PSRL--TVAGYKPPGTTQELPDSSLTGGTLGGLLAFRSQTLDPAQNQLGRLAASLAAQFN 309
Query: 303 E 303
Sbjct: 310 A 310
Score = 31.9 bits (73), Expect = 0.39
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
GVNL EE + L++ +Q+Y + K+I + TLL
Sbjct: 613 GVNLDEEAANLLRYQQAYQANAKVIQTASTLFDTLL 648
>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 547
Score = 50.4 bits (121), Expect = 1e-06
Identities = 59/303 (19%), Positives = 125/303 (41%), Gaps = 19/303 (6%)
Query: 16 NASQQFASIV-RNIENADNKNYVRRDTMT-----TISPEN-----VTVVT-QRSENKNMF 63
NA+Q + V NI N + Y R+ T+ T++ V V QR + +
Sbjct: 13 NAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFIT 72
Query: 64 DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
+++ A + + G + + ++S D + S T + SL++ N +
Sbjct: 73 NQLRAAQTQSSGLTTRYEQMSKIDNLLS-DSTNSLSTT--MQDFFTSLQTLVSNAEDPAA 129
Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT-- 181
+ +I AE +V F T+ + ++ + I + + + ++ +ND I T
Sbjct: 130 RQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRLTGV 189
Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
+ +D LDQRD L+ ++++I+G+ V++ + ++G +L + +
Sbjct: 190 GAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG-STAYQLAAVP 248
Query: 242 SYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
S + + ++DG + G + LL R + +NQL ++A +
Sbjct: 249 SSADPTRTTVAYVDGTAGNIEIPEKLLTTGSLGGLLTFRSQDLDQTRNQLGQLALAFADA 308
Query: 301 FSE 303
F+
Sbjct: 309 FNT 311
>gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 613
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
N+T+ EY R + + ++ ++ ++ + N + + Y + GV+ EEL LIK +
Sbjct: 530 NMTIEEYYRFLTTKIASDTEKNNRINDTNKALLNSVKKEYQSISGVSTDEELVNLIKFQS 589
Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
SY + K+I D+ML TLL G+K
Sbjct: 590 SYGAAAKIITTIDQMLDTLL-GIK 612
Score = 31.9 bits (73), Expect = 0.32
Identities = 16/104 (15%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
++ ++ N + + + E + N + + ++ ++E+++ + +
Sbjct: 119 NAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGK 178
Query: 169 ELTVVNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTI 210
++ +N IK A K A++ D+RD L +S+++G +
Sbjct: 179 QIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLVGANVF 222
>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 43.2 bits (102), Expect = 2e-04
Identities = 59/301 (19%), Positives = 127/301 (42%), Gaps = 32/301 (10%)
Query: 16 NASQQ-FASIVRNIENADNKNYVRRDTM-TTISPENVTVV-----TQRSENKNMFDKVLH 68
ASQ A NI N D Y R+ T+ TT + + T ++ + +++ L
Sbjct: 12 GASQTALAVTGNNIANVDTAGYSRQQTVQTTKASQQSGAGYIGTGTTLADVRRIYNSFLD 71
Query: 69 AH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD---SLESYSKNLSEDILG 124
+A ++ L ++ D ++S T L+ +L++ + N ++
Sbjct: 72 TQLRTATSLNSDASAY--LGQISQLDKLLSDSTTGISPALQRFFTALQTAAANPTDTAAR 129
Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
+ ++ A+ + + FN+ + ++ + ++ + ++ + + + N I +AS
Sbjct: 130 QLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASASG 189
Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL--------FETVPRDIN 236
+D LD RD +++++E++G++ + R+ N VY G L VP
Sbjct: 190 ATPNDLLDARDEAVRQLNELVGVTVVERDGN-YDVYIGSGQPLVVGNTANTLSVVP---- 244
Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
+ S N + ++ + + S V G+I LL+ R V+ N+L +A V
Sbjct: 245 -----GPSDPSRYN-VQLNRGSSTQDVTSVVSGGEIGGLLRYRSDVLDPAMNELGRLALV 298
Query: 297 L 297
+
Sbjct: 299 V 299
Score = 30.9 bits (70), Expect = 0.77
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
+ V +S + GV+L EE + LIK +Q Y S+++I + TL+
Sbjct: 622 TAAVLKQAKDSRDSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFSTLI 673
>gnl|CDD|183697 PRK12714, flgK, flagellar hook-associated protein FlgK;
Provisional.
Length = 624
Score = 41.9 bits (98), Expect = 3e-04
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
S DS + S N S ++++D+ + F ++ + + + + + +
Sbjct: 110 SNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVN 169
Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
R ++ +N I +++++ A D LDQRD L+ K+ G + ++++ M V+T+ G
Sbjct: 170 RLTQQIAKINGTIG--SSAQNAAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGG 227
Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVP------KGKIKALLQ 277
L + +T+ ++P + V+ QG V G+I LL+
Sbjct: 228 QALVVGT---------TASKLTTVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLE 278
Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSE 303
R SV+ Q +L +A + SF+
Sbjct: 279 FRSSVLEPTQAELGRLAVGMASSFNA 304
Score = 37.6 bits (87), Expect = 0.008
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 425 SQVVFNHISESYSNTV-GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
+Q V N +++ +++ GVNL EE + ++K++Q+Y + ++I D M Q +L V+
Sbjct: 568 AQKVINDQAQASRDSISGVNLDEEAANMLKLQQAYQAAAQMISTADTMFQAILGAVR 624
>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 626
Score = 41.8 bits (98), Expect = 4e-04
Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 35/261 (13%)
Query: 45 ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
+S N+ T N +M +L + +S + L + F+A+K + AD SP
Sbjct: 78 LSTTNLANKTDTEANLDMLSSMLSSVASKKIPENLNEWFDAVKTL--AD-----SPNDLG 130
Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
++ K V++ A+ + Q N V++ + +K+++L + +
Sbjct: 131 AR------------------KVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERIN 172
Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV-VYTSD 223
+ E+ ++ + +T H+ D +DQ + L++++S+ ++ R N + V+ +
Sbjct: 173 QIALEIRDIHRLM-MRTPGPHN--DLMDQHEKLVKELSQYTKVTVTPRKNAEGFNVHIGN 229
Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
G TL + ++ Y + ++G + + + + GK+ ALL +RD +
Sbjct: 230 GHTLVSGTEAS-QLKMIDGYPDPHQRRLAMVEGKGLKAIKADDI-GGKLGALLDMRDEHI 287
Query: 284 PIFQNQLDEMARVLIGSFSEK 304
P DE+ R+ G FS +
Sbjct: 288 PYLM---DELGRLATG-FSSE 304
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
GVNL EE + ++K +Q+Y S++++ + T+L+
Sbjct: 588 GVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQ 624
>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 34.0 bits (78), Expect = 0.097
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
+++ Y VN+ EEL +I+ +++Y I++K + +D+MLQ L
Sbjct: 214 LNQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRL 257
>gnl|CDD|180871 PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 456
Score = 32.5 bits (74), Expect = 0.26
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
+ G+ NV+L + A +G++ + +H ++ V N + + GVN EE
Sbjct: 368 DLPGMG-NVSLGDAATALVGYIAITSNQNHSELENAENVRNQAERYWESFSGVNNDEEAM 426
Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLL 476
L++ +++Y + K+I DK+ LL
Sbjct: 427 NLMEYQRAYQSNMKVIATGDKLFSDLL 453
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 261
Score = 32.1 bits (74), Expect = 0.29
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
SN VN+ EEL +I +++Y +++K I D+MLQ +
Sbjct: 222 SN---VNVVEELVNMITGQRAYEMNSKAISTADQMLQYV 257
>gnl|CDD|161920 TIGR00545, lipoyltrans, lipoyltransferase and lipoate-protein
ligase. One member of this group of proteins is bovine
lipoyltransferase, which transfers the lipoyl group from
lipoyl-AMP to the specific Lys of lipoate-dependent
enzymes. However, it does not first activate lipoic acid
with ATP to create lipoyl-AMP and pyrophosphate. Another
member of this group, lipoate-protein ligase A from E.
coli, catalyzes both the activation and the transfer of
lipoate. Homology between the two is full-length, except
for the bovine mitochondrial targeting signal, but is
strongest toward the N-terminus.
Length = 324
Score = 31.7 bits (72), Expect = 0.44
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
SK S+ S N+ E + T EE+ Q F T V+ D +K ++E
Sbjct: 173 SKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFFTYTERVETYILDENKTPDVEKRAKE 232
Query: 165 RFLSE 169
RF S
Sbjct: 233 RFQSW 237
>gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 31.4 bits (71), Expect = 0.58
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
F I + Y V+ +E++ LI ++++ +++K+I D+M T+ +G++
Sbjct: 211 FGKIQQGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262
>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 431
Score = 31.0 bits (70), Expect = 0.71
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
NS + + ++ +KN + T+I + N A+ + ++ A ++IE
Sbjct: 108 NSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIE 167
Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
++ R L N I A + LD+RD +L ++S+ I + N
Sbjct: 168 AHVNEFNRLAKSLAEANKKIG--QAGTQVPNQLLDERDRILTEMSKYANIEVSYESMN 223
>gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078). This
family consists of a number of C-terminal domains of
unknown function. This domain seems to be specific to
flagellar basal-body rod and flagellar hook proteins in
which pfam00460 is often present at the extreme N
terminus.
Length = 39
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
V+L EE+ LI+ +++Y + K+I D+ML TLL
Sbjct: 2 NVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLN 38
>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 30.3 bits (69), Expect = 1.3
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
F I + Y V++ +E++ LI +++Y +++K+I D+MLQT
Sbjct: 211 FGTIRQGYLEASNVDVVKEITDLITAQRAYEMNSKVITAADEMLQT 256
>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG,
Gram-negative bacteria. This family consists of the
FlgG protein of the flagellar apparatus in the
Proteobacteria and spirochetes.
Length = 259
Score = 29.6 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
VN+ +E+ +I +++Y +++K I +D+MLQT+
Sbjct: 222 VNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTV 255
>gnl|CDD|184953 PRK14991, PRK14991, tetrathionate reductase subunit A; Provisional.
Length = 1031
Score = 29.6 bits (67), Expect = 1.9
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 34/91 (37%)
Query: 222 SDGTTLFETVPRD------INFEK--MNSYTVTSE-------SNPIFI------------ 254
+DGT L E P I+F+ M+S ++ S +NP+ +
Sbjct: 873 ADGTPLREQFPESQWPLLLISFKSNLMSSMSIASPRLRQVKPANPVALNPQDAARLGIQH 932
Query: 255 -DGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
D V +S+ P G + A + + V+P
Sbjct: 933 GDRVRIST------PGGSVVAQASVLNGVMP 957
>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon
proteobacterial. Members of this family are flagellar
hook proteins, designated FlgE, as found in the epsilon
subdivision of the Proteobacteria (Helicobacter,
Wolinella, and Campylobacter). These proteins differ
significantly in architecture from proteins designated
FlgE in other lineages; the N-terminal and C-terminal
domains are homologous, but members of this family only
contain a large central domain that is surface-exposed
and variable between strains.
Length = 719
Score = 29.5 bits (66), Expect = 2.0
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
+S S V+L L+ LI V++ + ++K + +D++L TLL+
Sbjct: 671 MSTSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQ 716
>gnl|CDD|179729 PRK04049, PRK04049, 30S ribosomal protein S8e; Validated.
Length = 127
Score = 29.4 bits (67), Expect = 2.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 22 ASIVRNIENADNKNYVRRDTMT 43
I+ +EN N +Y RR+ +T
Sbjct: 75 VKILTVVENPANPHYARRNIIT 96
>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein. This model
represents NifA, a DNA-binding regulatory protein for
nitrogen fixation. The model produces scores between the
trusted and noise cutoffs for a well-described NifA
homolog in Aquifex aeolicus (which lacks nitrogenase),
for transcriptional activators of alternative
nitrogenases (VFe or FeFe instead of MoFe), and
truncated forms.
Length = 534
Score = 29.3 bits (66), Expect = 2.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 265 SAVPKGKIKALLQIRDSVVPIF-------QNQLDEMARVLIGSFSEK 304
AV KG+ +A L R +VVPIF + + +A + F+ +
Sbjct: 344 EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE 390
>gnl|CDD|150387 pfam09703, Cas_Csa4, CRISPR-associated protein (Cas_Csa4). CRISPR
loci appear to be mobile elements with a wide host
range. This entry represents a protein that tends to be
found near CRISPR repeats. The species range for this
species, so far, is exclusively archaeal. It is found so
far in only four different species, and includes two
tandem genes in Pyrococcus furiosus DSM 3638. CRISPR is
a term for Clustered, Regularly Interspaced Short
Palindromic Repeats. A number of protein families appear
only in association with these repeats and are
designated Cas (CRISPR-Associated) proteins.
Length = 361
Score = 29.0 bits (65), Expect = 2.7
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 35/153 (22%)
Query: 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL------GKTVIDN 130
+ LLQ A +M Y+N ++ L Y L+E +L G TV+
Sbjct: 208 EILLQKDLAKSILMVQGPRYDNVINRLLALL------YVLLLTETLLELLTESGFTVLVY 261
Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
E N Q +R+ E+E+S L FL L + T D
Sbjct: 262 GLEDSGNN-------QAVRSFR----EVELSRLMDFLWYLKAR---DFYHTIKWPKFLDQ 307
Query: 191 LDQRD--VLLQKISEIIGISTIVRNNNDMVVYT 221
L + +L + I ++ ++ +Y
Sbjct: 308 LARYAPEILHRLIEALL-------FEDEDGLYG 333
>gnl|CDD|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated.
Length = 731
Score = 28.9 bits (65), Expect = 3.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
V+L L+ LI +++ + ++K I +D+ML TLL+
Sbjct: 693 VDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQ 728
>gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 128
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD 40
L +F A + +A ++ A + RN+ NAD Y RD
Sbjct: 2 FEKLEIFRMASAMARHAGERQAVVARNVANADTPGYRARD 41
>gnl|CDD|180232 PRK05748, PRK05748, replicative DNA helicase; Provisional.
Length = 448
Score = 28.8 bits (65), Expect = 3.6
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 103 YISKLRDS------LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
Y+++L +S +E Y+K ++E + + +I A E+ + + +I +A+K+I
Sbjct: 88 YLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPEDDADEILDEAEKKI 147
Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
E+S RR S + D + D+ ++L + +I GI T
Sbjct: 148 -FEVSE-RRNKSGFKNIKDVLV----------KAYDRIEMLHNQTGDITGIPT 188
>gnl|CDD|180452 PRK06186, PRK06186, hypothetical protein; Validated.
Length = 229
Score = 28.4 bits (64), Expect = 4.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 399 TLLEYARNSIGW 410
LLEYARN +GW
Sbjct: 95 ALLEYARNVLGW 106
>gnl|CDD|184634 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 420
Score = 28.1 bits (63), Expect = 4.9
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
+E +K + KEI FL V N +F +S+H+ DF D LL K+S
Sbjct: 163 KEAEKAVNNGAKEI---------FLLGQNVNNYGKRF--SSEHEKVDFSD----LLDKLS 207
Query: 203 EIIGISTI 210
EI G+ I
Sbjct: 208 EIEGLERI 215
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 27.8 bits (62), Expect = 6.6
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 92 ADD----HYNNS---PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
ADD HY + P H ++++R E Y KN +N E V +F +
Sbjct: 119 ADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKN-----------ENKEVAVNDFLPAEAA 167
Query: 145 VQKIRADADKEIELEISNLRR 165
++ I+ D E + +LRR
Sbjct: 168 IEAIQYSMDLYAEYIVESLRR 188
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 27.7 bits (62), Expect = 6.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
GV V+ N G AV GK A D V P L MA
Sbjct: 72 GVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMAL 111
>gnl|CDD|163380 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 27.6 bits (62), Expect = 7.2
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 82 SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE--DILGKTVIDNAEEVVQNFN 139
S L+E + +++ S++ K+++E + G+ + AE++V+ N
Sbjct: 97 SVTTLEEDLGPKFKQLGVEATFLN--LTSVDGMKKSITELGEKYGRE--EQAEKLVKEIN 152
Query: 140 TSAREVQKIRADADK 154
EV+K K
Sbjct: 153 EKEAEVKKKVKGKKK 167
>gnl|CDD|180144 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 27.1 bits (61), Expect = 9.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ---LDEMAR 295
+ GVVV +GS VP K+K +L++ D + LD A
Sbjct: 42 LIGVVVGVEEGSEVPADKLKPILEVLDLEPLLPPELLRLLDWAAD 86
>gnl|CDD|128805 smart00532, LIGANc, Ligase N family.
Length = 441
Score = 27.2 bits (61), Expect = 10.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 229 ETVPRDINFE--KMNSYTVTSESNPIFIDGVVVSS 261
ET DI + + T +E P+F+ G VS
Sbjct: 315 ETKLLDIIVQVGRTGKITPVAELEPVFLAGSTVSR 349
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,482,950
Number of extensions: 480035
Number of successful extensions: 976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 72
Length of query: 480
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,898,497
Effective search space: 1493124351
Effective search space used: 1493124351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)