RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated
protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
(480 letters)
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain
protein, alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
(A:1-268,A:356-463)
Length = 376
Score = 134 bits (339), Expect = 2e-32
Identities = 56/395 (14%), Positives = 134/395 (33%), Gaps = 28/395 (7%)
Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
+ +++ A + + G + + +++ +S + + SL++ N +
Sbjct: 7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKS---SSLSGSLQSFFTSLQTLVSNAEDP 63
Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK--F 179
+ +I AE +V F T+ + ++ + I ++ + + ++ +ND I
Sbjct: 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123
Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
+ +D LDQRD L+ ++++I+G+ V++ + ++G TL +
Sbjct: 124 GVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG-STARQLAA 182
Query: 240 MNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
+ S + + ++D + G + LL R + +N L ++A
Sbjct: 183 VPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFA 242
Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
+F+ + +++ G + + + T S D +
Sbjct: 243 DAFNAQHTKGYDADGNKGKDFFSIGSAIVDM---NVKVTNEAEIAMASESKLDPDVDTGD 299
Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
N + L + + N T + + + S
Sbjct: 300 SDNR-NGQALLDLQN-----------------SNVVGGNKTFNDAYATLVSDVGNKTSTL 341
Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
V + + + GVNL EE L +
Sbjct: 342 KTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 36.8 bits (85), Expect = 0.007
Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 35/126 (27%)
Query: 11 QNICNNASQ-----QFASIVRNIENADNKNYVRR--------------DTMTTISPENVT 51
+ I A + ++AS N+ Y +R + + + E
Sbjct: 4 KGILTTAREHHSSVKYASPNLNM------KYRKRQLVTREAQIKDWVENELEALKLEAEE 57
Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
+ ++ +N+ + ++ H+ A Q R A + +D Y P I+ LR +L
Sbjct: 58 IPSE-DQNEFLLERTREIHNEAESQLR-----AAQQ--QWGNDFYKRDP--RIAPLRGAL 107
Query: 112 ESYSKN 117
+YSK+
Sbjct: 108 ATYSKD 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 35.1 bits (81), Expect = 0.018
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
+++++ I ++V ++V Y G T+ VPRD
Sbjct: 2 LADVMSIESLV----EVVFYR--GMTMQVAVPRD 29
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino
acid, amadoriase, deglycation; HET: MSE FAD FSA EPE;
1.60A {Aspergillus fumigatus} PDB: 3djd_A*
(A:1-44,A:161-223,A:343-405)
Length = 170
Score = 33.4 bits (76), Expect = 0.068
Identities = 7/91 (7%), Positives = 23/91 (25%), Gaps = 5/91 (5%)
Query: 237 FEKMNS----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN-QLD 291
+ + + + GV + I ++ +V + + +
Sbjct: 36 LDPYPVPSARNALVAAAREAQRXGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAE 95
Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
S +++ + L + G
Sbjct: 96 RTFLCAGASAGQREFLIDRHPQYHSLVLGCG 126
>2hek_A Hypothetical protein; predominantly alpha helical protein
with GDP binding site and active site being FAR from
EACH other, structural genomics; HET: GDP; 2.00A
{Aquifex aeolicus} (A:1-221)
Length = 221
Score = 32.9 bits (74), Expect = 0.094
Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)
Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN-LS 119
+ S +R+++ E + + D+ + + E + LS
Sbjct: 94 TTEVLLPRERSHEDFTERVIKETEIYEILK--QDYSHEDIERLVRITLGKPEDEEEKLLS 151
Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
E I G+ D + + R + + R +S L V + +
Sbjct: 152 EIITGEFGSDRMDYLR-------------RDAYFCGVSYGFFDYDRLISTLRVYENKVVV 198
Query: 180 KTASKHDAHDFLDQRDVLLQKI 201
+ +FL R + ++
Sbjct: 199 DESGLRALENFLISRYFMYVQV 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} (A:1-31,A:113-213)
Length = 132
Score = 29.2 bits (65), Expect = 1.2
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
+ D + D T + V FE + + +F V++ + +
Sbjct: 50 VYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVR 108
Query: 270 GKIKA 274
G I A
Sbjct: 109 GYITA 113
>2ijz_A Probable M18-family aminopeptidase 2; putative
aminopeptidase 2, structural genomics, PSI, protein
structure initiative; 3.00A {Pseudomonas aeruginosa}
(A:84-220)
Length = 137
Score = 28.6 bits (64), Expect = 2.0
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
R G + + + K +A P+L H + N+ + + +
Sbjct: 45 TFRANGKLESRLVDFRKAIAVIPNLNIHLNRAANEGWPINAQNELP 90
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A
{Petromyzon marinus} (A:)
Length = 150
Score = 26.9 bits (59), Expect = 5.2
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
++ +S T + ++ + V G L++ F + +
Sbjct: 6 GSVAPLSAAEKTKI------RSAWAPVYSTDYETSGVDILVKFFTSTPAAQEFFPKFKGL 59
Query: 100 PTHYISK 106
T K
Sbjct: 60 TTADELK 66
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A
{Escherichia coli} (A:)
Length = 61
Score = 26.5 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 131 AEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFL 167
+++ A E KI A A EIE E R L
Sbjct: 22 RSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,345,264
Number of extensions: 148519
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 16
Length of query: 480
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 388
Effective length of database: 1,845,989
Effective search space: 716243732
Effective search space used: 716243732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)