RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] (480 letters) >2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463) Length = 376 Score = 134 bits (339), Expect = 2e-32 Identities = 56/395 (14%), Positives = 134/395 (33%), Gaps = 28/395 (7%) Query: 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121 + +++ A + + G + + +++ +S + + SL++ N + Sbjct: 7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKS---SSLSGSLQSFFTSLQTLVSNAEDP 63 Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK--F 179 + +I AE +V F T+ + ++ + I ++ + + ++ +ND I Sbjct: 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239 + +D LDQRD L+ ++++I+G+ V++ + ++G TL + Sbjct: 124 GVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG-STARQLAA 182 Query: 240 MNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298 + S + + ++D + G + LL R + +N L ++A Sbjct: 183 VPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFA 242 Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358 +F+ + +++ G + + + T S D + Sbjct: 243 DAFNAQHTKGYDADGNKGKDFFSIGSAIVDM---NVKVTNEAEIAMASESKLDPDVDTGD 299 Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418 N + L + + N T + + + S Sbjct: 300 SDNR-NGQALLDLQN-----------------SNVVGGNKTFNDAYATLVSDVGNKTSTL 341 Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 V + + + GVNL EE L + Sbjct: 342 KTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 36.8 bits (85), Expect = 0.007 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 35/126 (27%) Query: 11 QNICNNASQ-----QFASIVRNIENADNKNYVRR--------------DTMTTISPENVT 51 + I A + ++AS N+ Y +R + + + E Sbjct: 4 KGILTTAREHHSSVKYASPNLNM------KYRKRQLVTREAQIKDWVENELEALKLEAEE 57 Query: 52 VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111 + ++ +N+ + ++ H+ A Q R A + +D Y P I+ LR +L Sbjct: 58 IPSE-DQNEFLLERTREIHNEAESQLR-----AAQQ--QWGNDFYKRDP--RIAPLRGAL 107 Query: 112 ESYSKN 117 +YSK+ Sbjct: 108 ATYSKD 113 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 35.1 bits (81), Expect = 0.018 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 +++++ I ++V ++V Y G T+ VPRD Sbjct: 2 LADVMSIESLV----EVVFYR--GMTMQVAVPRD 29 >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* (A:1-44,A:161-223,A:343-405) Length = 170 Score = 33.4 bits (76), Expect = 0.068 Identities = 7/91 (7%), Positives = 23/91 (25%), Gaps = 5/91 (5%) Query: 237 FEKMNS----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN-QLD 291 + + + + GV + I ++ +V + + + Sbjct: 36 LDPYPVPSARNALVAAAREAQRXGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAE 95 Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322 S +++ + L + G Sbjct: 96 RTFLCAGASAGQREFLIDRHPQYHSLVLGCG 126 >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} (A:1-221) Length = 221 Score = 32.9 bits (74), Expect = 0.094 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%) Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN-LS 119 + S +R+++ E + + D+ + + E + LS Sbjct: 94 TTEVLLPRERSHEDFTERVIKETEIYEILK--QDYSHEDIERLVRITLGKPEDEEEKLLS 151 Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179 E I G+ D + + R + + R +S L V + + Sbjct: 152 EIITGEFGSDRMDYLR-------------RDAYFCGVSYGFFDYDRLISTLRVYENKVVV 198 Query: 180 KTASKHDAHDFLDQRDVLLQKI 201 + +FL R + ++ Sbjct: 199 DESGLRALENFLISRYFMYVQV 220 >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:1-31,A:113-213) Length = 132 Score = 29.2 bits (65), Expect = 1.2 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%) Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269 + D + D T + V FE + + +F V++ + + Sbjct: 50 VYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVR 108 Query: 270 GKIKA 274 G I A Sbjct: 109 GYITA 113 >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structural genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} (A:84-220) Length = 137 Score = 28.6 bits (64), Expect = 2.0 Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 R G + + + K +A P+L H + N+ + + + Sbjct: 45 TFRANGKLESRLVDFRKAIAVIPNLNIHLNRAANEGWPINAQNELP 90 >2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} (A:) Length = 150 Score = 26.9 bits (59), Expect = 5.2 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 6/67 (8%) Query: 40 DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99 ++ +S T + ++ + V G L++ F + + Sbjct: 6 GSVAPLSAAEKTKI------RSAWAPVYSTDYETSGVDILVKFFTSTPAAQEFFPKFKGL 59 Query: 100 PTHYISK 106 T K Sbjct: 60 TTADELK 66 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:) Length = 61 Score = 26.5 bits (59), Expect = 7.1 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 131 AEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFL 167 +++ A E KI A A EIE E R L Sbjct: 22 RSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.131 0.362 Gapped Lambda K H 0.267 0.0629 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,345,264 Number of extensions: 148519 Number of successful extensions: 404 Number of sequences better than 10.0: 1 Number of HSP's gapped: 403 Number of HSP's successfully gapped: 16 Length of query: 480 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 388 Effective length of database: 1,845,989 Effective search space: 716243732 Effective search space used: 716243732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.6 bits)