RPSBLAST alignment of GI: 254780524 and protein with PDBid: 2pff

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688
 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 91/335 (27%)

Query: 110  SLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            S++  S NL+     + ++    ++   V+N      E++ ++ +A+ EI  E  N   F
Sbjct: 1236 SVKYASPNLNMKYRKRQLVTREAQIKDWVEN------ELEALKLEAE-EIPSEDQN--EF 1286

Query: 167  LSELT--VVNDA-IKFKTASKHDAHDFLDQRDVLLQKISEIIG-ISTIVRNNNDMVVYTS 222
            L E T  + N+A  + + A +   +DF  +RD    +I+ + G ++T     +D+ V + 
Sbjct: 1287 LLERTREIHNEAESQLRAAQQQWGNDFY-KRD---PRIAPLRGALATYGLTIDDLGVASF 1342

Query: 223  DGTTLFETVPRDIN----FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK-----IK 273
             GT+   T   D N      +M  +   SE NP+   GV      G   PKG      + 
Sbjct: 1343 HGTS---TKANDKNESATINEMMKHLGRSEGNPVI--GVFQKFLTGH--PKGAAGAWMMN 1395

Query: 274  ALLQIRDS-VVPIFQNQ------LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
              LQI +S ++P  +N       L++   VL  S + K                DG++ +
Sbjct: 1396 GALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLK---------------TDGVRAV 1440

Query: 327  DNK---LCQGISETICVNPQY---------------------RSNPSFLRDGGSVSKKFL 362
                    Q   + I V+P Y                     +S   F  +G   +K F+
Sbjct: 1441 SITSFGFGQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFV 1500

Query: 363  WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
               K  A  P     Y D   ++   DP+A ++ +
Sbjct: 1501 --SKEHA--P-----YTDELEEDVYLDPLARVSKD 1526