RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated
protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
         (480 letters)



>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
           coli [TaxId: 562]}
          Length = 181

 Score = 26.9 bits (59), Expect = 4.0
 Identities = 8/51 (15%), Positives = 16/51 (31%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           QF  +  N +         +DT+      +  +V    +       + H H
Sbjct: 116 QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCH 166


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 26.1 bits (57), Expect = 6.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS---KKFLWNVKNLAG--------- 370
           I++L +K   G+   + +N      P+++R+  S +    +FL    NL G         
Sbjct: 503 IENLRHKT--GLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILANT 560

Query: 371 YPDLINHYCDS 381
           Y + +N YCDS
Sbjct: 561 YANAVNVYCDS 571


>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 25.8 bits (56), Expect = 6.8
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 8/164 (4%)

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ-NFNTSAREVQKIRADA 152
           DH       +I  L D+ E +     + +    +ID +EE +Q N    ++ ++++    
Sbjct: 109 DHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSK-I 167

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +E+E+         +   +           D      +   +  + +       +  
Sbjct: 168 GMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNV-- 225

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
                 VY +    L  T+ RD        + +   S      G
Sbjct: 226 ----HGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHG 265


>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 250

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/129 (10%), Positives = 29/129 (22%)

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
             L         V     +        G + +     V  +    D  +        N  
Sbjct: 111 KNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTG 170

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
                       L     N+                  + V  +  + +  ++GVN +  
Sbjct: 171 TYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA 230

Query: 448 LSFLIKVEQ 456
           L+    V +
Sbjct: 231 LATAESVMR 239


>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
           EnvZ {Escherichia coli [TaxId: 562]}
          Length = 161

 Score = 25.6 bits (56), Expect = 9.5
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
            EV+   +   RE++        E+++   +++R ++ +  V +A ++            
Sbjct: 17  GEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANM--VVNAARY-GNGWIKVSSGT 73

Query: 192 DQRDVLLQKISEIIGIS 208
           +      Q   +  GI+
Sbjct: 74  EPNRAWFQVEDDGPGIA 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,672,549
Number of extensions: 77885
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 11
Length of query: 480
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,185,626
Effective search space: 463579766
Effective search space used: 463579766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)