BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] (480 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/480 (100%), Positives = 480/480 (100%) Query: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK Sbjct: 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60 Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE Sbjct: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120 Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK Sbjct: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180 Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM Sbjct: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS Sbjct: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300 Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK Sbjct: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360 Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD Sbjct: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420 Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK Sbjct: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 30.0 bits (66), Expect = 0.093, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 26/43 (60%) Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 F H+ + Y V+ +E+S +I +++Y +++K+I D+M Sbjct: 212 FAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEM 254 >gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 257 VVVSSNQGSAVPKGKIKALLQIR--DSVV-PIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 V S+N S +P K + LQIR +SV+ F +++E+ + ++D + G + Sbjct: 5 VSASNNDTSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDK 64 Query: 314 V 314 V Sbjct: 65 V 65 >gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 21/36 (58%) Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163 I NAE + + S+R +QKI + +K + I+N+ Sbjct: 148 ISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANI 183 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 310 NSENVPGLFIADGI--KDL-DNKLCQGISETI 338 + N+P +FI I KDL DN+LC+G+ I Sbjct: 787 DQANMPPIFILINIASKDLLDNELCEGMQALI 818 >gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 N + E Q+ D I+ I+N+R S L D+I K S H+ L Sbjct: 33 NEATYESQRKEKSIDSAIQ-PITNIRHIHSPLVQQADSIAQKACSLHELKSLL 84 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 + E M T E + D V+V S+ + + + ++ R+ + P F+ Q+ E Sbjct: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFR-QIVEKI 254 Query: 295 RVLIGSFSEK--DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 L+ EK +P+ EN PG I ++ + L G+ E + P Sbjct: 255 YALMTKKEEKRLNPL----ENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300 >gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] Length = 130 Score = 23.5 bits (49), Expect = 9.1, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQT 474 E+ + K+E++ S KLI F D+ ++T Sbjct: 35 EVEVIEKLERALKTSKKLIHFRDRTIRT 62 >gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 +++SP+ + K+ S++ K +DILG V + + + S+ E QKI Sbjct: 18 FSSSPSWIMEKINVSIDFDKKLFEQDILGSKV--HTTMLAKQGIISSEEAQKI 68 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.131 0.362 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,478 Number of Sequences: 1233 Number of extensions: 13366 Number of successful extensions: 58 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 25 length of query: 480 length of database: 328,796 effective HSP length: 77 effective length of query: 403 effective length of database: 233,855 effective search space: 94243565 effective search space used: 94243565 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)