HHsearch alignment for GI: 254780525 and conserved domain: COG1344
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion].
Probab=91.43 E-value=0.6 Score=23.68 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 321 D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ll~ 360 (360)
T COG1344 321 DVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7769999999999999999999999999860288897359