HHsearch alignment for GI: 254780525 and conserved domain: COG1558

>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion].

Probab=98.91  E-value=2.2e-09  Score=77.47  Aligned_cols=68  Identities=31%  Similarity=0.442  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             94458899999999999986378877530277867------1422002465430477776312205885788630
Q gi|254780525|r    1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS   69 (421)
Q Consensus         1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~   69 (421)
T Consensus         1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~pYrrk~vvF~~~~~~~~~~-~~~~~VkV~~I~eD~   74 (137)
T COG1558           1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELFAPTGA-TGGAGVKVSKIVEDP   74 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC-CCCCCEEEEEEEECC
T ss_conf             92165652554777888999899876430354456899984375456765513454445-788635898876069