HHsearch alignment for GI: 254780525 and conserved domain: COG4786
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00 E-value=3.1e-37 Score=254.96 Aligned_cols=250 Identities=34% Similarity=0.537 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC--------------CCCCCCCCCEEEEEEEEE
Q ss_conf 458899999999999986378877530277867142200246543047--------------777631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS--------------TSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~--------------~~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 M~r~ly~a~sGM~aqq~kld~IsNNlANvNT~GfK~~~a~F~dll~q~~~~~~~~~~~~~~~p~~~~vg~Gv~~~~~~~~ 80 (265)
T COG4786 1 MLRGLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPNSNSTTSPSGGQVGLGVRVNETYTV 80 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 90578898778999998655652120237775504454506999999874268877666446655256654144247864
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T Consensus 81 ~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G~~vl----------------------- 137 (265)
T COG4786 81 FTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNGYPVL----------------------- 137 (265)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCC-----------------------
T ss_conf 044674106985435874782699984998788852774468899878807997745-----------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
T Consensus 138 ---------------------------------------------------~~~G~~i~i~~~~---------------- 150 (265)
T COG4786 138 ---------------------------------------------------DSGGNPITIPNNA---------------- 150 (265)
T ss_pred ---------------------------------------------------CCCCCCEECCCCC----------------
T ss_conf ---------------------------------------------------7888724528874----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
T Consensus 151 ------------------------------------------------------------------------------~~ 152 (265)
T COG4786 151 ------------------------------------------------------------------------------GS 152 (265)
T ss_pred ------------------------------------------------------------------------------EE
T ss_conf ------------------------------------------------------------------------------45
Q ss_pred CCCCCCCEEEEEECCC-CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 5547763389984143-211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDDG-TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
T Consensus 153 i~i~~dG~v~~~~~~~~~~~~~g~i~lv~f~n~~gL~k~G~nl~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~ 231 (265)
T COG4786 153 ITIGKDGTVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVE 231 (265)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHH
T ss_conf 553256447899658866147536889981380664330775310168877-7546778787552786412120567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 232 EMt~mI~aqRayE~nsK~i~~~D~m~~~~~n~~~ 265 (265)
T COG4786 232 EMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999887886658999999986549