HHsearch alignment for GI: 254780525 and conserved domain: COG4787

>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].
Probab=99.35  E-value=4.2e-11  Score=88.36  Aligned_cols=110  Identities=26%  Similarity=0.325  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHH
Q ss_conf             58899999999999986378877530277867142200246543047777631220588578863034111214830221
Q gi|254780525|r    4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDL   83 (421)
Q Consensus         4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~   83 (421)
T Consensus         2 D~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~v~g~~~p-trt~~~~s~pg~d~spG~l~~TgR~LDv   80 (251)
T COG4787           2 DHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLP-TRTFVMASTPGTDMSPGSLDYTGRPLDV   80 (251)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-HHEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             237898878888889988877514213566317899988630124688752-0103541467656788610136885307


Q ss_pred             HHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             1036662010179882564201122212367
Q gi|254780525|r   84 AIQGKGFFIVKGRDNVNCLTRAGDFHINNEG  114 (421)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (421)
T Consensus        81 aiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g  111 (251)
T COG4787          81 AIQGDGWLAVQDADGSEAYTRNGNIQIDATG  111 (251)
T ss_pred             EECCCCEEEEECCCCCCHHEECCCEEECCCC
T ss_conf             9736856999868875011115746787654