HHsearch alignment for GI: 254780525 and conserved domain: COG4787
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].
Probab=99.35 E-value=4.2e-11 Score=88.36 Aligned_cols=110 Identities=26% Similarity=0.325 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHH
Q ss_conf 58899999999999986378877530277867142200246543047777631220588578863034111214830221
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDL 83 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~ 83 (421)
T Consensus 2 D~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~v~g~~~p-trt~~~~s~pg~d~spG~l~~TgR~LDv 80 (251)
T COG4787 2 DHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLP-TRTFVMASTPGTDMSPGSLDYTGRPLDV 80 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-HHEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 237898878888889988877514213566317899988630124688752-0103541467656788610136885307
Q ss_pred HHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 1036662010179882564201122212367
Q gi|254780525|r 84 AIQGKGFFIVKGRDNVNCLTRAGDFHINNEG 114 (421)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (421)
T Consensus 81 aiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g 111 (251)
T COG4787 81 AIQGDGWLAVQDADGSEAYTRNGNIQIDATG 111 (251)
T ss_pred EECCCCEEEEECCCCCCHHEECCCEEECCCC
T ss_conf 9736856999868875011115746787654