HHsearch alignment for GI: 254780525 and conserved domain: PRK05681
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.67 E-value=9.7e-16 Score=117.92 Aligned_cols=68 Identities=29% Similarity=0.476 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------142200246543047777631220588578863
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d 74 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVED 74 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 95388899999999999999999998553267778999987643124553033100024678776588777438