HHsearch alignment for GI: 254780525 and conserved domain: PRK05682
>PRK05682 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=385.51 Aligned_cols=408 Identities=32% Similarity=0.508 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC---CCCCCCCCCEEEEEEEEEECCCCEEEC
Q ss_conf 94458899999999999986378877530277867142200246543047---777631220588578863034111214
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS---TSNSYVSGGLEISTKDMISEQGSLMHT 77 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~---~~~~~~G~GV~v~~i~r~~~~~~~~~t 77 (421)
T Consensus 1 ms----l~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qG~~~~T 76 (414)
T PRK05682 1 MS----FNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQQFTQGTITST 76 (414)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEC
T ss_conf 95----88999999999860167767787677530087755167865212567888743441785158876377785777
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83022110366620101798825642011222123672014556201111101345554323445444444444554543
Q gi|254780525|r 78 ASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAM 157 (421)
Q Consensus 78 ~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (421)
T Consensus 77 ~~~~D~ai~G~GfF~v~-~~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~~~l~~I~i~~~~~~~~ 155 (414)
T PRK05682 77 GNSLDLAISGNGFFVVS-SNGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQNANLVPLQIPTTALAPK 155 (414)
T ss_pred CCCCEEEECCCCEEEEC-CCCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 98321787377438864-89956888556188855881985999988704504788754433457744346047667864
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 33211233102455444444444456776543222103675406887367787621355554204776304444465666
Q gi|254780525|r 158 PTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPY 237 (421)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (421)
T Consensus 156 ~Tt~~~~~~NL~~~~~~--~~~~~~~~~~~~~~~~~t~~~vyDs~G~~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~ 233 (414)
T PRK05682 156 ATTTVTFQGNLNSTAPV--PAVTPFDPTDADTYNKSTSVTVYDSLGNSHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTP 233 (414)
T ss_pred CCEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCC
T ss_conf 31057663014777756--6666667778765320345998868997489999999658980689997478765666554
Q ss_pred C--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--443210012202445644577653321246776655433233333100-2333343233444332344344554776
Q gi|254780525|r 238 N--VAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQ-LAGGFIPQKSEINGHAPGKPKDFSVSKD 314 (421)
Q Consensus 238 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (421)
T Consensus 234 ~~~~~~~~~~~l~F~~~-G~l~~~~~~~~----~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~d 308 (414)
T PRK05682 234 TGTAGTTTAGTLTFDSN-GALTSFTIAIN----GGATPAGTLTLDLSGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDD 308 (414)
T ss_pred CCCCCCCCCCEEEECCC-CCCCCCCCCCC----CCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 55556565421687688-72424666555----67787740687245640221466542211357722230466788899
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Q ss_conf 33899841432110122200121786787741695266323358702137888761146523100047789999999999
Q gi|254780525|r 315 GYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIE 394 (421)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~ 394 (421)
T Consensus 309 G~i~a~~sNG~~~~l~qi~la~F~N~~gL~~~g~n~y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~ 388 (414)
T PRK05682 309 GTVVATYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIV 388 (414)
T ss_pred CEEEEEECCCCEEEEEEEEEEEECCHHHHHHHCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHH
T ss_conf 67999977995778768878862697897752497176411158753368998871248536405001779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999997512
Q gi|254780525|r 395 AQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 395 ~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
T Consensus 389 ~QRaYqANskvItTsDemLq~linlK 414 (414)
T PRK05682 389 AQRNYQANAKTIKTQDQLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHHEEEEEHHHHHHHHHHCC
T ss_conf 98774674034561999999997259