HHsearch alignment for GI: 254780525 and conserved domain: PRK07521
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=331.32 Aligned_cols=193 Identities=18% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034111214830
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
T Consensus 1 Msl~s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~~~~~----------~~Gv~v~~I~R~~d~fl~~q~r~~ 70 (482)
T PRK07521 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTASLVSG----------PYGGQVVGISRAQDEALLAQYLLA 70 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHH
T ss_conf 9767899999999999999999885635307998824137787744----------898578779981148999999999
Q ss_pred H----------HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2----------211036662010179882564201122212367201455620111110134555432344544444444
Q gi|254780525|r 81 T----------DLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVK 150 (421)
Q Consensus 81 ~----------d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (421)
T Consensus 71 ~s~~~~~~~~~~~l~~le~~~~e~~~~-~~l~~~l~~F~~a~q~ls~~P~~~~~r~~v~~~a~~L~~~~n~~~~~L~~~~ 149 (482)
T PRK07521 71 TSAAAAQDTLASGLERLASAVGDTDYE-GSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSAR 149 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877789999999999999983899888-7578999999999999861988789999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 455454333211233102455444444444456776543222103675406887
Q gi|254780525|r 151 HAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGS 204 (421)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (421)
T Consensus 150 ~~~~~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~ 203 (482)
T PRK07521 150 ADADAEIATSVDTLNTLLAQFEDANNAIVSGTATGRDASDLLDQRDALLKQISQ 203 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999995247899947889999999999985