HHsearch alignment for GI: 254780525 and conserved domain: PRK08147
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=314.27 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC---
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483---
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTAS--- 79 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~--- 79 (421)
T Consensus 1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~~~r~~~s 80 (547)
T PRK08147 1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQT 80 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 96189999999999999999997756338999806305775224665567874257879806988152899999999987
Q ss_pred -------HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------0221103666201017988256420112221236720145562011111013455543234454444444445
Q gi|254780525|r 80 -------NTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA 152 (421)
Q Consensus 80 -------~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (421)
T Consensus 81 ~~~~~~~~~~~l~~le~~f~e~---~~gl~~~l~~f~~a~~~ls~~P~~~~~r~~vi~~A~~La~~~n~~~~~L~~~~~~ 157 (547)
T PRK08147 81 QSSGLTTRYEQMSKIDNLLSDS---TNSLSTTLQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKG 157 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7779999999999999872888---8757899999999999998688988999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 545433321123310245544444
Q gi|254780525|r 153 ELSAMPTTTGFISNNLDKNATIIT 176 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~ 176 (421)
T Consensus 158 ~~~~i~~~V~~iN~ll~~Ia~LN~ 181 (547)
T PRK08147 158 VNIAIGTSVDQINNYAKQIASLND 181 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999