HHsearch alignment for GI: 254780525 and conserved domain: PRK12625
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=98.40 E-value=3.8e-07 Score=63.20 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=42.0
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHH
Q ss_conf 94--4588999999999999863788775302778671422002465430
Q gi|254780525|r 1 MG--ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF 48 (421)
Q Consensus 1 MS--l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~ 48 (421)
T Consensus 1 m~~~fd~~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl~Fe~~L~ 50 (132)
T PRK12625 1 MAINFDKALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDVDFSAAMQ 50 (132)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 96548888617899999999999999871430689998865388999999