HHsearch alignment for GI: 254780525 and conserved domain: PRK12629
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=98.25 E-value=2.9e-06 Score=57.56 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------1422002465430477776312205885788630
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~ 69 (421)
T Consensus 1 Ms~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~~~~~yr~~~~vf~~~~~~~~---~~~~~V~v~~i~~d~ 72 (135)
T PRK12629 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQSRQD---PSLTSVNVKEITTTN 72 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC---CCCCCEEEEEEECCC
T ss_conf 963657769999899999999999998774688898999877640112564432457---887866777754379