HHsearch alignment for GI: 254780525 and conserved domain: PRK12690
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=99.97 E-value=2.1e-30 Score=211.33 Aligned_cols=236 Identities=26% Similarity=0.368 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
T Consensus 1 M~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~d~~qG~l~~Tg~~lD 79 (237)
T PRK12690 1 MDAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGGEASLS-MASAGARQTSLEQGGLTQTGGQFD 79 (237)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCEEECCCCCE
T ss_conf 9168999999999999867889889987777432726344899986247887633-134663465417768455698215
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG 162 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
T Consensus 80 lAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~VL~------------------------------------ 122 (237)
T PRK12690 80 LAIEGEGFFMVETPQGE-RLTRAGAFTPNAEGELVTPDGYRLLD------------------------------------ 122 (237)
T ss_pred EEECCCCEEEEEECCCC-EEEECCCEEECCCCCEECCCCCEEEC------------------------------------
T ss_conf 99858957999807983-69973627898998889389989157------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r 163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (421)
T Consensus 123 --------------------------------------~~g~pI~ip~~~------------------------------ 134 (237)
T PRK12690 123 --------------------------------------AGGAPIFIPPDA------------------------------ 134 (237)
T ss_pred --------------------------------------CCCCCEEECCCC------------------------------
T ss_conf --------------------------------------999834837998------------------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 10012202445644577653321246776655433233333100233334323344433234434455477633899841
Q gi|254780525|r 243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYD 322 (421)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (421)
T Consensus 135 --~--------------------------------------------------------------~~~I~~dG~i~~--- 147 (237)
T PRK12690 135 --R--------------------------------------------------------------SVAVGADGTISA--- 147 (237)
T ss_pred --C--------------------------------------------------------------EEEECCCCEEEE---
T ss_conf --5--------------------------------------------------------------379989970965---
Q ss_pred CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43211012220012178678774169526632335870213788876114652310004778999999999999999999
Q gi|254780525|r 323 DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVN 402 (421)
Q Consensus 323 ~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAs 402 (421)
T Consensus 148 --~~~~vg~l~l~~~~~~~~L~~~g~~~~~~~~~~~-~-------~~~~~v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~ 217 (237)
T PRK12690 148 --DGQPLGQVGLFQPDDPLGLRREGGTRFRAEGGVE-P-------AEGASLLQGFLEGSNVNPILEIARMIEVQRAYELG 217 (237)
T ss_pred --CCEEEEEEEEEECCCHHHHEECCCCEECCCCCCC-C-------CCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --8868788889812783770577894572788878-7-------77874873521012268999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HCC
Q ss_conf 9999999999999975-129
Q gi|254780525|r 403 SKVFQTGSDFMDILIS-LKR 421 (421)
Q Consensus 403 ArvItt~demldtLln-l~R 421 (421)
T Consensus 218 ~k~i~~~De~~~~ain~lGr 237 (237)
T PRK12690 218 QSFLDAEDDRIRQTIRTLGR 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999998569