HHsearch alignment for GI: 254780525 and conserved domain: PRK12690

>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=99.97  E-value=2.1e-30  Score=211.33  Aligned_cols=236  Identities=26%  Similarity=0.368  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf             45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r    3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD   82 (421)
Q Consensus         3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d   82 (421)
T Consensus         1 M~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~d~~qG~l~~Tg~~lD   79 (237)
T PRK12690          1 MDAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGGEASLS-MASAGARQTSLEQGGLTQTGGQFD   79 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCEEECCCCCE
T ss_conf             9168999999999999867889889987777432726344899986247887633-134663465417768455698215


Q ss_pred             HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r   83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG  162 (421)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (421)
T Consensus        80 lAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~VL~------------------------------------  122 (237)
T PRK12690         80 LAIEGEGFFMVETPQGE-RLTRAGAFTPNAEGELVTPDGYRLLD------------------------------------  122 (237)
T ss_pred             EEECCCCEEEEEECCCC-EEEECCCEEECCCCCEECCCCCEEEC------------------------------------
T ss_conf             99858957999807983-69973627898998889389989157------------------------------------


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r  163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL  242 (421)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (421)
T Consensus       123 --------------------------------------~~g~pI~ip~~~------------------------------  134 (237)
T PRK12690        123 --------------------------------------AGGAPIFIPPDA------------------------------  134 (237)
T ss_pred             --------------------------------------CCCCCEEECCCC------------------------------
T ss_conf             --------------------------------------999834837998------------------------------


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             10012202445644577653321246776655433233333100233334323344433234434455477633899841
Q gi|254780525|r  243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYD  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
T Consensus       135 --~--------------------------------------------------------------~~~I~~dG~i~~---  147 (237)
T PRK12690        135 --R--------------------------------------------------------------SVAVGADGTISA---  147 (237)
T ss_pred             --C--------------------------------------------------------------EEEECCCCEEEE---
T ss_conf             --5--------------------------------------------------------------379989970965---


Q ss_pred             CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             43211012220012178678774169526632335870213788876114652310004778999999999999999999
Q gi|254780525|r  323 DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVN  402 (421)
Q Consensus       323 ~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAs  402 (421)
T Consensus       148 --~~~~vg~l~l~~~~~~~~L~~~g~~~~~~~~~~~-~-------~~~~~v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~  217 (237)
T PRK12690        148 --DGQPLGQVGLFQPDDPLGLRREGGTRFRAEGGVE-P-------AEGASLLQGFLEGSNVNPILEIARMIEVQRAYELG  217 (237)
T ss_pred             --CCEEEEEEEEEECCCHHHHEECCCCEECCCCCCC-C-------CCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --8868788889812783770577894572788878-7-------77874873521012268999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HCC
Q ss_conf             9999999999999975-129
Q gi|254780525|r  403 SKVFQTGSDFMDILIS-LKR  421 (421)
Q Consensus       403 ArvItt~demldtLln-l~R  421 (421)
T Consensus       218 ~k~i~~~De~~~~ain~lGr  237 (237)
T PRK12690        218 QSFLDAEDDRIRQTIRTLGR  237 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             89999999999999998569