HHsearch alignment for GI: 254780525 and conserved domain: PRK12691
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=2.4e-39 Score=268.40 Aligned_cols=246 Identities=31% Similarity=0.507 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC---------------CCCCCCCCEEEEEEEEE
Q ss_conf 588999999999999863788775302778671422002465430477---------------77631220588578863
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST---------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~---------------~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 lr~lyta~SGm~a~~~~ld~iaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gv~~~~~~~~ 80 (262)
T PRK12691 1 MRALSIAATGMAAQQLNVEVISNNIANMNTTGFKRARAEFQDLLYQQERRVGAQSSDNGTIVPTGVQLGLGVKTAAVRRI 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 93199999999999972578888888777564474746389999877413587666656435655410352475468875
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~--------------------- 139 (262)
T PRK12691 81 HTQGTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRDGAFNRSADGQIVTADGYPVQPG--------------------- 139 (262)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 15787530688213898489568885589957365445267989964892799894676---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
T Consensus 140 ---------------i--------~i------------------------------------------------------ 142 (262)
T PRK12691 140 ---------------I--------TI------------------------------------------------------ 142 (262)
T ss_pred ---------------C--------CC------------------------------------------------------
T ss_conf ---------------1--------05------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
T Consensus 143 -------p~-------------------------------------------------------------------~~~~ 148 (262)
T PRK12691 143 -------PQ-------------------------------------------------------------------DATS 148 (262)
T ss_pred -------CC-------------------------------------------------------------------CCCC
T ss_conf -------89-------------------------------------------------------------------9851
Q ss_pred CCCCCCCEEEEEECCC-CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 5547763389984143-211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDDG-TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
T Consensus 149 i~I~~dG~i~~~~~g~~~~~~vg~l~l~~f~n~~~L~~~g~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (262)
T PRK12691 149 ITINASGQVSVTLDGQTQPQVLGQITLARFTNEAGLEAIGDNLFRETPASGAPQVGVPGEDGFGTIRQGYLEASNVDVVK 228 (262)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEECCCHHHCEECCCCCEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 37878976999846887741777899983178477021588617733677885115678887226843856534465999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 229 Em~~mI~~qRaye~n~k~i~t~De~~~~a~nllR 262 (262)
T PRK12691 229 EITDLITAQRAYEMNSKVISAADEMLQTTSKNLR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999998668