HHsearch alignment for GI: 254780525 and conserved domain: PRK12692
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=1.4e-37 Score=257.20 Aligned_cols=246 Identities=31% Similarity=0.490 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC---------------CCCCCCCCCEEEEEEEEE
Q ss_conf 58899999999999986378877530277867142200246543047---------------777631220588578863
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS---------------TSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~---------------~~~~~~G~GV~v~~i~r~ 68 (421)
T Consensus 1 lr~ly~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 80 (262)
T PRK12692 1 MRALAIAATGMSAQQLNVEVIANNIANLNTTGFKRARAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLGLGVRAAAIRNL 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 92399999999999971478888998777664585746389999877521477665677446766532341355357875
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~v~~~--------------------- 139 (262)
T PRK12692 81 HRQGPLAQTGNPLDLAVNGRGWFQVTGPNGEINYTRAGSFNKNADGQLVTAEGYAVDPA--------------------- 139 (262)
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 15787421698103898689679997479958789745378999999881788774775---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
T Consensus 140 -------------------------i~~p-----~-------------------~-~~---------------------- 147 (262)
T PRK12692 140 -------------------------ILIP-----Q-------------------N-TT---------------------- 147 (262)
T ss_pred -------------------------CCCC-----C-------------------C-CE----------------------
T ss_conf -------------------------2168-----8-------------------8-51----------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
T Consensus 148 -------------------------------------------------------------------------------~ 148 (262)
T PRK12692 148 -------------------------------------------------------------------------------Q 148 (262)
T ss_pred -------------------------------------------------------------------------------E
T ss_conf -------------------------------------------------------------------------------5
Q ss_pred CCCCCCCEEEEEECC-CCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 554776338998414-3211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDD-GTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
T Consensus 149 i~i~~~G~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (262)
T PRK12692 149 VTINESGQVFAKLDGQVTPQLLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGVPGDVGFGKIQQGYLESSNVDPVK 228 (262)
T ss_pred EEECCCCEEEEECCCCCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHH
T ss_conf 88779855999527876753000588996158020325688620146667785446788787453831761035565999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
T Consensus 229 EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~liR 262 (262)
T PRK12692 229 EITELISAQRAFEMNSKVIQAADEMAGTVSKGIR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999997639