HHsearch alignment for GI: 254780525 and conserved domain: TIGR01395

>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.

Probab=98.53  E-value=8e-08  Score=67.49  Aligned_cols=67  Identities=25%  Similarity=0.348  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC---C--CCCCCEEHHHH----HHCC------CCCCCCCCCEEEEEE
Q ss_conf             58899999999999986378877530277---86---7--14220024654----3047------777631220588578
Q gi|254780525|r    4 LGSMKTAMSGMDAQSNRVSAVSDNIANVD---TV---G--YKRTAIAFSSL----VFPS------TSNSYVSGGLEISTK   65 (421)
Q Consensus         4 ~~~l~~a~SGL~A~q~al~vts~NIANan---T~---G--YsRq~~~~~~~----~~~~------~~~~~~G~GV~v~~i   65 (421)
T Consensus         1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~vF~~~~~~~~~~~~~~~~~~~~~~~~~~V~V~~v   80 (147)
T TIGR01395         1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPVFEAEVNKEPLSKILYSSDEVSGGAISGVKVAKV   80 (147)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf             95203454467777767766553220333435778888654684015876664755566775630004789775245542


Q ss_pred             EEEEC
Q ss_conf             86303
Q gi|254780525|r   66 DMISE   70 (421)
Q Consensus        66 ~r~~~   70 (421)
T Consensus        81 ~~d~~   85 (147)
T TIGR01395        81 VEDDS   85 (147)
T ss_pred             EECCC
T ss_conf             22688