HHsearch alignment for GI: 254780525 and conserved domain: pfam06429

>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.06  E-value=2.8e-10  Score=83.16  Aligned_cols=39  Identities=46%  Similarity=0.764  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             477899999999999999999999999999999999751
Q gi|254780525|r  381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL  419 (421)
Q Consensus       381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl  419 (421)
T Consensus         1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~   39 (39)
T pfam06429         1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL   39 (39)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988789999999999999899999998899999998763