HHsearch alignment for GI: 254780525 and conserved domain: pfam06429
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.06 E-value=2.8e-10 Score=83.16 Aligned_cols=39 Identities=46% Similarity=0.764 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 477899999999999999999999999999999999751
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763