HHSEARCH alignment of GI: 254780525 and SCOP domain: d1wlga_

Alignment
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]}
Probab=99.78  E-value=1.2e-17  Score=127.13  Aligned_cols=291  Identities=22%  Similarity=0.373  Sum_probs=202.1

Q ss_pred             HHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22110366620101798825642011222123672014556201111101345554323445444444444554543332
Q gi|254780525|r   81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTT  160 (421)
Q Consensus        81 ~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      ||+|+.++++|......+...++|...|..+.+++|.+..+...+++..+..........  ..................
T Consensus         2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~--~~~~i~i~~~~~~~~aTt   79 (293)
T d1wlga_           2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGA--NPAPITIPNTLMAAKSTT   79 (293)
T ss_dssp             EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTC--CCEECCCCCCCBCCBCCC
T ss_pred             CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf             647874870799876999887844887329899998839999898576368886312577--655443444345776551


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             11233102455444444444456776543222103675406887367787621355554204776304444465666644
Q gi|254780525|r  161 TGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                      .......+......  .............+.......++|.+|..|.+.+++.+.....|..............     .
T Consensus        80 ~~~~~~NL~~~~~~--~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~-----~  152 (293)
T d1wlga_          80 TASMQINLNSTDPV--PSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----P  152 (293)
T ss_dssp             EEEEEEEEETTCCC--CSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCC-----C
T ss_pred             EEEEECCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC-----C
T ss_conf             46774166421235--5322223478776330113676422586422205666204654137871256644546-----6


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             3210012202445644577653321246776655433233-333100233334323344433234434455477633899
Q gi|254780525|r  241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITID-ISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDI  319 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      ......+.|+....... ...................... .....++............+...|.+....|+..|.+.+
T Consensus       153 ~~~~~~l~F~~~G~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~  231 (293)
T d1wlga_         153 TTASTTLKFNENGILES-GGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVG  231 (293)
T ss_dssp             CSCSEEEEECTTSBEEE-CCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEE
T ss_pred             CCCEEEEECCCCCCCCC-CCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEE
T ss_conf             43135653278632223-33100023441124321000252210001257400244326884311232106658758999


Q ss_pred             EECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECC
Q ss_conf             84143211012220012178678774169526632335870213788876114652310004
Q gi|254780525|r  320 IYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETA  381 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~S  381 (421)
                      .+.++.......+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+|
T Consensus       232 ~ysNG~~~~lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S  293 (293)
T d1wlga_         232 NYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS  293 (293)
T ss_dssp             EETTSCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC
T ss_pred             EECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC
T ss_conf             97699678988999997359687321259708760016885556899888223842613169


SCOP domain information

class: All beta proteins
fold: Flagellar hook protein flgE
superfamily: Flagellar hook protein flgE
family: Flagellar hook protein flgE
domain: Flagellar hook protein flgE
species: Salmonella typhimurium [TaxId: 90371]