Query gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 421 No_of_seqs 133 out of 3438 Neff 10.3 Searched_HMMs 13730 Date Wed Jun 1 10:04:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780525.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wlga_ b.152.1.1 (A:) Flagell 99.8 1.2E-17 8.9E-22 127.1 17.4 291 81-381 2-293 (293) 2 d1neia_ d.253.1.1 (A:) Hypothe 17.8 17 0.0013 11.5 1.3 16 406-421 32-47 (60) 3 d2duca1 b.47.1.4 (A:2-301) Cor 12.9 21 0.0016 10.9 0.2 13 381-393 256-268 (300) 4 d1p9sa_ b.47.1.4 (A:) Coronavi 9.9 29 0.0021 10.0 0.4 14 381-394 254-267 (300) 5 d1q8ha_ g.32.1.1 (A:) Osteocal 9.2 32 0.0023 9.7 1.6 14 387-400 18-31 (37) 6 d2oc5a1 a.25.1.6 (A:20-241) Hy 8.7 35 0.0025 9.5 0.4 23 386-408 44-70 (222) 7 d2goma1 a.7.17.1 (A:105-165) F 8.1 33 0.0024 9.7 -0.3 15 387-401 30-44 (61) 8 d2npta1 d.15.2.2 (A:4-108) Mit 7.3 44 0.0032 8.9 1.8 17 383-399 69-85 (105) 9 d2erxa1 c.37.1.8 (A:6-176) di- 7.1 45 0.0033 8.8 1.9 13 409-421 153-165 (171) 10 d2c4ka1 c.61.1.2 (A:7-166) PRP 6.5 50 0.0037 8.5 0.3 6 35-40 94-99 (160) No 1 >d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Probab=99.78 E-value=1.2e-17 Score=127.13 Aligned_cols=291 Identities=22% Similarity=0.373 Sum_probs=202.1 Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22110366620101798825642011222123672014556201111101345554323445444444444554543332 Q gi|254780525|r 81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTT 160 (421) Q Consensus 81 ~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (421) ||+|+.++++|......+...++|...|..+.+++|.+..+...+++..+.......... .................. T Consensus 2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~--~~~~i~i~~~~~~~~aTt 79 (293) T d1wlga_ 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGA--NPAPITIPNTLMAAKSTT 79 (293) T ss_dssp EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTC--CCEECCCCCCCBCCBCCC T ss_pred CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC T ss_conf 647874870799876999887844887329899998839999898576368886312577--655443444345776551 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 11233102455444444444456776543222103675406887367787621355554204776304444465666644 Q gi|254780525|r 161 TGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240 (421) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (421) .......+...... .............+.......++|.+|..|.+.+++.+.....|.............. . T Consensus 80 ~~~~~~NL~~~~~~--~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~-----~ 152 (293) T d1wlga_ 80 TASMQINLNSTDPV--PSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----P 152 (293) T ss_dssp EEEEEEEEETTCCC--CSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCC-----C T ss_pred EEEEECCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC-----C T ss_conf 46774166421235--5322223478776330113676422586422205666204654137871256644546-----6 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 3210012202445644577653321246776655433233-333100233334323344433234434455477633899 Q gi|254780525|r 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITID-ISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDI 319 (421) Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (421) ......+.|+....... ...................... .....++............+...|.+....|+..|.+.+ T Consensus 153 ~~~~~~l~F~~~G~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~ 231 (293) T d1wlga_ 153 TTASTTLKFNENGILES-GGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVG 231 (293) T ss_dssp CSCSEEEEECTTSBEEE-CCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEE T ss_pred CCCEEEEECCCCCCCCC-CCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEE T ss_conf 43135653278632223-33100023441124321000252210001257400244326884311232106658758999 Q ss_pred EECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECC Q ss_conf 84143211012220012178678774169526632335870213788876114652310004 Q gi|254780525|r 320 IYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETA 381 (421) Q Consensus 320 ~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~S 381 (421) .+.++.......+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+| T Consensus 232 ~ysNG~~~~lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S 293 (293) T d1wlga_ 232 NYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS 293 (293) T ss_dssp EETTSCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC T ss_pred EECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC T ss_conf 97699678988999997359687321259708760016885556899888223842613169 No 2 >d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]} Probab=17.77 E-value=17 Score=11.45 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 9999999999975129 Q gi|254780525|r 406 FQTGSDFMDILISLKR 421 (421) Q Consensus 406 Itt~demldtLlnl~R 421 (421) =.++-|+...|+|++| T Consensus 32 p~~aae~vKdLvNiVR 47 (60) T d1neia_ 32 PEVAAEVIKDLVNTVR 47 (60) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 0779999999998872 No 3 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Probab=12.90 E-value=21 Score=10.86 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=5.1 Q ss_pred CCCCHHHHHHHHH Q ss_conf 4778999999999 Q gi|254780525|r 381 ANVDIASELTELI 393 (421) Q Consensus 381 SgVnlDEEm~nLi 393 (421) .||++..=+.-+. T Consensus 256 TGVsVe~lL~aI~ 268 (300) T d2duca1 256 TGIAVLDMCAALK 268 (300) T ss_dssp HTCCHHHHHHHHH T ss_pred HCCCHHHHHHHHH T ss_conf 4878999999999 No 4 >d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]} Probab=9.93 E-value=29 Score=10.02 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=5.2 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 47789999999999 Q gi|254780525|r 381 ANVDIASELTELIE 394 (421) Q Consensus 381 SgVnlDEEm~nLi~ 394 (421) .||++..=+.-+++ T Consensus 254 TGV~V~~lL~aI~~ 267 (300) T d1p9sa_ 254 TGVCVERLLHAIQV 267 (300) T ss_dssp TTCCHHHHHHHHHH T ss_pred HCCCHHHHHHHHHH T ss_conf 48779999999999 No 5 >d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]} Probab=9.16 E-value=32 Score=9.74 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780525|r 387 SELTELIEAQRNYA 400 (421) Q Consensus 387 EEm~nLi~~Q~aYq 400 (421) .|+++-|-||.+|. T Consensus 18 delad~igfqeayr 31 (37) T d1q8ha_ 18 DELADHIGFQEAYR 31 (37) T ss_dssp HHHHHHHCHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99998754899999 No 6 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Probab=8.65 E-value=35 Score=9.53 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=12.4 Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHH Q ss_conf 999999999----99999999999999 Q gi|254780525|r 386 ASELTELIE----AQRNYAVNSKVFQT 408 (421) Q Consensus 386 DEEm~nLi~----~Q~aYqAsArvItt 408 (421) -||++.|-+ -.++|+|+.|-+.+ T Consensus 44 ~dEL~rLakME~rH~kgF~aCGrNL~V 70 (222) T d2oc5a1 44 VEELKRLAKMEMRHKKGFTACGKNLGV 70 (222) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 899999999998887688887227758 No 7 >d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]} Probab=8.14 E-value=33 Score=9.69 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780525|r 387 SELTELIEAQRNYAV 401 (421) Q Consensus 387 EEm~nLi~~Q~aYqA 401 (421) ....||+-||+.|.- T Consensus 30 Q~AVNLi~F~~~~~K 44 (61) T d2goma1 30 QKAVNLVSFEYKVKK 44 (61) T ss_dssp HHHHHHSCGGGHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 987657778989999 No 8 >d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Probab=7.28 E-value=44 Score=8.90 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 78999999999999999 Q gi|254780525|r 383 VDIASELTELIEAQRNY 399 (421) Q Consensus 383 VnlDEEm~nLi~~Q~aY 399 (421) |-.||||--||-|-..+ T Consensus 69 VRSDEEl~AMisyy~~~ 85 (105) T d2npta1 69 VRSDEEMKAMLSYYYST 85 (105) T ss_dssp ECSHHHHHHHHHHHHHH T ss_pred ECCHHHHHHHHHHHHHH T ss_conf 72679999999999999 No 9 >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Probab=7.11 E-value=45 Score=8.81 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999975129 Q gi|254780525|r 409 GSDFMDILISLKR 421 (421) Q Consensus 409 ~demldtLlnl~R 421 (421) ++|+|+.|+++.| T Consensus 153 v~e~f~~l~~~~~ 165 (171) T d2erxa1 153 VKELFQELLNLEK 165 (171) T ss_dssp HHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 10 >d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.51 E-value=50 Score=8.49 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=0.0 Q ss_pred CCCCCC Q ss_conf 714220 Q gi|254780525|r 35 GYKRTA 40 (421) Q Consensus 35 GYsRq~ 40 (421) ||+||. T Consensus 94 ~YaRQD 99 (160) T d2c4ka1 94 PYSKQS 99 (160) T ss_dssp TTTTTT T ss_pred HHHHCC T ss_conf 122054 Done!