Query         gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 421
No_of_seqs    133 out of 3438
Neff          10.3
Searched_HMMs 13730
Date          Wed Jun  1 10:04:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780525.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wlga_ b.152.1.1 (A:) Flagell  99.8 1.2E-17 8.9E-22  127.1  17.4  291   81-381     2-293 (293)
  2 d1neia_ d.253.1.1 (A:) Hypothe  17.8      17  0.0013   11.5   1.3   16  406-421    32-47  (60)
  3 d2duca1 b.47.1.4 (A:2-301) Cor  12.9      21  0.0016   10.9   0.2   13  381-393   256-268 (300)
  4 d1p9sa_ b.47.1.4 (A:) Coronavi   9.9      29  0.0021   10.0   0.4   14  381-394   254-267 (300)
  5 d1q8ha_ g.32.1.1 (A:) Osteocal   9.2      32  0.0023    9.7   1.6   14  387-400    18-31  (37)
  6 d2oc5a1 a.25.1.6 (A:20-241) Hy   8.7      35  0.0025    9.5   0.4   23  386-408    44-70  (222)
  7 d2goma1 a.7.17.1 (A:105-165) F   8.1      33  0.0024    9.7  -0.3   15  387-401    30-44  (61)
  8 d2npta1 d.15.2.2 (A:4-108) Mit   7.3      44  0.0032    8.9   1.8   17  383-399    69-85  (105)
  9 d2erxa1 c.37.1.8 (A:6-176) di-   7.1      45  0.0033    8.8   1.9   13  409-421   153-165 (171)
 10 d2c4ka1 c.61.1.2 (A:7-166) PRP   6.5      50  0.0037    8.5   0.3    6   35-40     94-99  (160)

No 1  
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]}
Probab=99.78  E-value=1.2e-17  Score=127.13  Aligned_cols=291  Identities=22%  Similarity=0.373  Sum_probs=202.1

Q ss_pred             HHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22110366620101798825642011222123672014556201111101345554323445444444444554543332
Q gi|254780525|r   81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTT  160 (421)
Q Consensus        81 ~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      ||+|+.++++|......+...++|...|..+.+++|.+..+...+++..+..........  ..................
T Consensus         2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~--~~~~i~i~~~~~~~~aTt   79 (293)
T d1wlga_           2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGA--NPAPITIPNTLMAAKSTT   79 (293)
T ss_dssp             EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTC--CCEECCCCCCCBCCBCCC
T ss_pred             CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf             647874870799876999887844887329899998839999898576368886312577--655443444345776551


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             11233102455444444444456776543222103675406887367787621355554204776304444465666644
Q gi|254780525|r  161 TGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                      .......+......  .............+.......++|.+|..|.+.+++.+.....|..............     .
T Consensus        80 ~~~~~~NL~~~~~~--~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~-----~  152 (293)
T d1wlga_          80 TASMQINLNSTDPV--PSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----P  152 (293)
T ss_dssp             EEEEEEEEETTCCC--CSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCC-----C
T ss_pred             EEEEECCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC-----C
T ss_conf             46774166421235--5322223478776330113676422586422205666204654137871256644546-----6


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             3210012202445644577653321246776655433233-333100233334323344433234434455477633899
Q gi|254780525|r  241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITID-ISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDI  319 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      ......+.|+....... ...................... .....++............+...|.+....|+..|.+.+
T Consensus       153 ~~~~~~l~F~~~G~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~  231 (293)
T d1wlga_         153 TTASTTLKFNENGILES-GGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVG  231 (293)
T ss_dssp             CSCSEEEEECTTSBEEE-CCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEE
T ss_pred             CCCEEEEECCCCCCCCC-CCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEE
T ss_conf             43135653278632223-33100023441124321000252210001257400244326884311232106658758999


Q ss_pred             EECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECC
Q ss_conf             84143211012220012178678774169526632335870213788876114652310004
Q gi|254780525|r  320 IYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETA  381 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~S  381 (421)
                      .+.++.......+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+|
T Consensus       232 ~ysNG~~~~lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S  293 (293)
T d1wlga_         232 NYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS  293 (293)
T ss_dssp             EETTSCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC
T ss_pred             EECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC
T ss_conf             97699678988999997359687321259708760016885556899888223842613169


No 2  
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=17.77  E-value=17  Score=11.45  Aligned_cols=16  Identities=13%  Similarity=0.235  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999975129
Q gi|254780525|r  406 FQTGSDFMDILISLKR  421 (421)
Q Consensus       406 Itt~demldtLlnl~R  421 (421)
                      =.++-|+...|+|++|
T Consensus        32 p~~aae~vKdLvNiVR   47 (60)
T d1neia_          32 PEVAAEVIKDLVNTVR   47 (60)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             0779999999998872


No 3  
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]}
Probab=12.90  E-value=21  Score=10.86  Aligned_cols=13  Identities=8%  Similarity=0.135  Sum_probs=5.1

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             4778999999999
Q gi|254780525|r  381 ANVDIASELTELI  393 (421)
Q Consensus       381 SgVnlDEEm~nLi  393 (421)
                      .||++..=+.-+.
T Consensus       256 TGVsVe~lL~aI~  268 (300)
T d2duca1         256 TGIAVLDMCAALK  268 (300)
T ss_dssp             HTCCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHH
T ss_conf             4878999999999


No 4  
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]}
Probab=9.93  E-value=29  Score=10.02  Aligned_cols=14  Identities=14%  Similarity=0.097  Sum_probs=5.2

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             47789999999999
Q gi|254780525|r  381 ANVDIASELTELIE  394 (421)
Q Consensus       381 SgVnlDEEm~nLi~  394 (421)
                      .||++..=+.-+++
T Consensus       254 TGV~V~~lL~aI~~  267 (300)
T d1p9sa_         254 TGVCVERLLHAIQV  267 (300)
T ss_dssp             TTCCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
T ss_conf             48779999999999


No 5  
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=9.16  E-value=32  Score=9.74  Aligned_cols=14  Identities=36%  Similarity=0.487  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780525|r  387 SELTELIEAQRNYA  400 (421)
Q Consensus       387 EEm~nLi~~Q~aYq  400 (421)
                      .|+++-|-||.+|.
T Consensus        18 delad~igfqeayr   31 (37)
T d1q8ha_          18 DELADHIGFQEAYR   31 (37)
T ss_dssp             HHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99998754899999


No 6  
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Probab=8.65  E-value=35  Score=9.53  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=12.4

Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf             999999999----99999999999999
Q gi|254780525|r  386 ASELTELIE----AQRNYAVNSKVFQT  408 (421)
Q Consensus       386 DEEm~nLi~----~Q~aYqAsArvItt  408 (421)
                      -||++.|-+    -.++|+|+.|-+.+
T Consensus        44 ~dEL~rLakME~rH~kgF~aCGrNL~V   70 (222)
T d2oc5a1          44 VEELKRLAKMEMRHKKGFTACGKNLGV   70 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             899999999998887688887227758


No 7  
>d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]}
Probab=8.14  E-value=33  Score=9.69  Aligned_cols=15  Identities=7%  Similarity=0.082  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780525|r  387 SELTELIEAQRNYAV  401 (421)
Q Consensus       387 EEm~nLi~~Q~aYqA  401 (421)
                      ....||+-||+.|.-
T Consensus        30 Q~AVNLi~F~~~~~K   44 (61)
T d2goma1          30 QKAVNLVSFEYKVKK   44 (61)
T ss_dssp             HHHHHHSCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             987657778989999


No 8  
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.28  E-value=44  Score=8.90  Aligned_cols=17  Identities=12%  Similarity=0.135  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             78999999999999999
Q gi|254780525|r  383 VDIASELTELIEAQRNY  399 (421)
Q Consensus       383 VnlDEEm~nLi~~Q~aY  399 (421)
                      |-.||||--||-|-..+
T Consensus        69 VRSDEEl~AMisyy~~~   85 (105)
T d2npta1          69 VRSDEEMKAMLSYYYST   85 (105)
T ss_dssp             ECSHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHH
T ss_conf             72679999999999999


No 9  
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.11  E-value=45  Score=8.81  Aligned_cols=13  Identities=15%  Similarity=0.434  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999975129
Q gi|254780525|r  409 GSDFMDILISLKR  421 (421)
Q Consensus       409 ~demldtLlnl~R  421 (421)
                      ++|+|+.|+++.|
T Consensus       153 v~e~f~~l~~~~~  165 (171)
T d2erxa1         153 VKELFQELLNLEK  165 (171)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 10 
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.51  E-value=50  Score=8.49  Aligned_cols=6  Identities=17%  Similarity=0.562  Sum_probs=0.0

Q ss_pred             CCCCCC
Q ss_conf             714220
Q gi|254780525|r   35 GYKRTA   40 (421)
Q Consensus        35 GYsRq~   40 (421)
                      ||+||.
T Consensus        94 ~YaRQD   99 (160)
T d2c4ka1          94 PYSKQS   99 (160)
T ss_dssp             TTTTTT
T ss_pred             HHHHCC
T ss_conf             122054


Done!