RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] (421 letters) >gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion]. Length = 423 Score = 289 bits (741), Expect = 9e-79 Identities = 149/429 (34%), Positives = 213/429 (49%), Gaps = 16/429 (3%) Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--SNSYVSGGL 60 +L S +SGM+A + +S+NIAN +T G+KR+ FS + S +++Y + G+ Sbjct: 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGV 60 Query: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIV-KGRDNVNCLTRAGDFHINNEGFLENV 119 +S+ I QGS T SN DLAI G GFFIV N TRAG F ++ G+L N Sbjct: 61 GVSSISQIFTQGSFQSTGSNLDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNP 120 Query: 120 AGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDK 179 AG L GYP N I L + L A TT S NL+ A + + Sbjct: 121 AGLYLQGYPA-NGVTGGINGGTTLLNIQIPNNNGLPAKATTNVSFSANLNSGAIVPS-IT 178 Query: 180 TPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNV 239 P + A Y +K+S YD+LG+ DVY+ KTG W+V + + Q P Sbjct: 179 APFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQ---TGDPDGT 235 Query: 240 AP-LNTVEVSFDPVTGYLANSSHKAISFNDNTSGI-----DQQITIDISKTTQLAGGFIP 293 A T + FDP G L + + Q I++D++ +TQ + GF Sbjct: 236 ADTGTTFTLEFDP-AGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSL 294 Query: 294 -QKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYL 352 S +G+APG KD+ + +DG + +Y +G P+ ++A+A + L GN Y Sbjct: 295 TVASTQDGYAPGNLKDYRIDEDGVIVGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYA 354 Query: 353 PTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDF 412 T +SG S+G G G+I SGALE +NVD+A ELT LI AQR Y N+KV T Sbjct: 355 ATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQRGYQANAKVITTSDQM 414 Query: 413 MDILISLKR 421 + L++LKR Sbjct: 415 LQTLVNLKR 423 >gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion]. Length = 265 Score = 99.2 bits (247), Expect = 2e-21 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV--------------FPST 51 + TA SGM AQ ++ +S+N+ANV+T G+KR F L+ S Sbjct: 4 GLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPNSNSTTSP 63 Query: 52 SNSYVSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHIN 111 S V G+ ++ + QGSL T + DLAI G GFF ++ D TR G F ++ Sbjct: 64 SGGQVGLGVRVNETYTVFTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVD 123 Query: 112 NEGFLENVAGGVLLGY 127 EG L G +L Sbjct: 124 EEGQLVTSNGYPVLDS 139 Score = 84.6 bits (209), Expect = 5e-17 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 303 PGKPKDFSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDIS 361 P ++ KDG V + T V + ++ + + LK N Y T SG I Sbjct: 147 PNNAGSITIGKDGTVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASGPIV 206 Query: 362 IGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 G PG N G I G LE +NV++ E+T++IEAQR Y NSKV QT + + +L R Sbjct: 207 -GVPGDNGFGAIRQGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265 >gnl|CDD|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility and secretion]. Length = 251 Score = 58.4 bits (141), Expect = 4e-09 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%) Query: 9 TAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMI 68 TAM + + ++N+AN T G++ A ++ S + + ST Sbjct: 7 TAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLPTRTFVM-ASTPGTD 65 Query: 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYP 128 GSL +T D+AIQG G+ V+ D TR G+ I+ G L + G+P Sbjct: 66 MSPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATGQL------TIQGHP 119 Query: 129 LKNASAPLIV 138 + P+ V Sbjct: 120 VIGEGGPITV 129 Score = 36.1 bits (83), Expect = 0.018 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 328 PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 + RL + ++ + DG L T ++ + + SGALE +NV+ Sbjct: 157 VVGRLKLVQATGQEVQRGDDGLFRL-TAETQQPRGQVLKADPSVRVMSGALEGSNVNAVE 215 Query: 388 ELTELIEAQRNYAVNSKVFQTGSD 411 E+T++I R + + K+ T D Sbjct: 216 EMTDMISLARQFEMQMKMISTADD 239 >gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion]. Length = 137 Score = 45.3 bits (107), Expect = 3e-05 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 9/82 (10%) Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNS 54 M + A S + AQS R++ +S NIAN D+ Y+R + FS+ +F + + Sbjct: 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELF---APT 57 Query: 55 YVSGGLEISTKDMISEQGSLMH 76 +GG + ++ + Sbjct: 58 GATGGAGVKVSKIVEDPSPFKL 79 Score = 34.9 bits (80), Expect = 0.049 Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFM 413 G ++ NV++ E+ ++I A R+Y N +V T M Sbjct: 92 GYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMM 129 >gnl|CDD|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein. Length = 31 Score = 45.2 bits (108), Expect = 4e-05 Identities = 13/31 (41%), Positives = 22/31 (70%) Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYK 37 + TA+S ++AQ + +++NIAN +T GYK Sbjct: 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 >gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion]. Length = 552 Score = 39.6 bits (92), Expect = 0.002 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKR 38 M + + TA+SG++A + NI+N +T GY R Sbjct: 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSR 38 Score = 34.2 bits (78), Expect = 0.067 Identities = 12/39 (30%), Positives = 24/39 (61%) Query: 383 VDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 V++ E+ LI+ Q+ Y ++KV QT + +D L+++ Sbjct: 514 VNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIVG 552 >gnl|CDD|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion]. Length = 133 Score = 37.2 bits (86), Expect = 0.009 Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISE 70 +D +S R +++NIAN DT GYK + F S++ + + + + L ++ + Sbjct: 14 ALDVRSLRQEVIANNIANADTPGYKAKDVDFESVLKKALAGNNTTLALAKTSTRHLGP 71 >gnl|CDD|37722 KOG2511, KOG2511, KOG2511, Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]. Length = 420 Score = 28.8 bits (64), Expect = 2.7 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%) Query: 40 AIAFSSLVFPSTSNSYVSGG------LEISTKDMISEQGSLMHTASNTDLAIQGKG---- 89 AI+ S+VF + G EI +++SE ++ +QG+ Sbjct: 100 AISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSE-AYFKFVDADWHREVQGEKAEFL 158 Query: 90 -FFIVKGRDNVNCLTRAGDFHINNEGFL--ENVAGGVLLGYPLKNASAPLIVNSFQGLER 146 F + R + + ++ GFL NV G P++ A V F ++ Sbjct: 159 EFGTRRRRGPQGAMKASKYCYLG--GFLGTSNVLFAKKYGIPVRGTVAHEWVMGFASIDE 216 Query: 147 INVKHAELSAMPTTTGFISNNL 168 I K ++ T F ++N+ Sbjct: 217 IYDKANRIADGKWTCTFGASNV 238 >gnl|CDD|145709 pfam02699, YajC, Preprotein translocase subunit. See. Length = 83 Score = 27.8 bits (63), Expect = 6.6 Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 313 KDGYVDIIYDDGTRVPIYRLAIATV 337 D V + DG +V + + AIA V Sbjct: 58 DDDTVVLEIADGVKVKVDKSAIARV 82 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.314 0.131 0.371 Gapped Lambda K H 0.267 0.0709 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,667,670 Number of extensions: 240661 Number of successful extensions: 348 Number of sequences better than 10.0: 1 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 18 Length of query: 421 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 325 Effective length of database: 4,189,273 Effective search space: 1361513725 Effective search space used: 1361513725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 59 (26.5 bits)