RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE
[Candidatus Liberibacter asiaticus str. psy62]
         (421 letters)



>gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and
           secretion].
          Length = 423

 Score =  289 bits (741), Expect = 9e-79
 Identities = 149/429 (34%), Positives = 213/429 (49%), Gaps = 16/429 (3%)

Query: 3   ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--SNSYVSGGL 60
           +L S    +SGM+A    +  +S+NIAN +T G+KR+   FS +   S   +++Y + G+
Sbjct: 1   MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGV 60

Query: 61  EISTKDMISEQGSLMHTASNTDLAIQGKGFFIV-KGRDNVNCLTRAGDFHINNEGFLENV 119
            +S+   I  QGS   T SN DLAI G GFFIV       N  TRAG F ++  G+L N 
Sbjct: 61  GVSSISQIFTQGSFQSTGSNLDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNP 120

Query: 120 AGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDK 179
           AG  L GYP  N     I      L      +  L A  TT    S NL+  A + +   
Sbjct: 121 AGLYLQGYPA-NGVTGGINGGTTLLNIQIPNNNGLPAKATTNVSFSANLNSGAIVPS-IT 178

Query: 180 TPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNV 239
            P +    A Y +K+S   YD+LG+    DVY+ KTG   W+V +  + Q      P   
Sbjct: 179 APFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQ---TGDPDGT 235

Query: 240 AP-LNTVEVSFDPVTGYLANSSHKAISFNDNTSGI-----DQQITIDISKTTQLAGGFIP 293
           A    T  + FDP  G L +              +      Q I++D++ +TQ + GF  
Sbjct: 236 ADTGTTFTLEFDP-AGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSL 294

Query: 294 -QKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYL 352
              S  +G+APG  KD+ + +DG +  +Y +G   P+ ++A+A   +   L    GN Y 
Sbjct: 295 TVASTQDGYAPGNLKDYRIDEDGVIVGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYA 354

Query: 353 PTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDF 412
            T +SG  S+G  G    G+I SGALE +NVD+A ELT LI AQR Y  N+KV  T    
Sbjct: 355 ATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQRGYQANAKVITTSDQM 414

Query: 413 MDILISLKR 421
           +  L++LKR
Sbjct: 415 LQTLVNLKR 423


>gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and
           secretion].
          Length = 265

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 6   SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV--------------FPST 51
            + TA SGM AQ  ++  +S+N+ANV+T G+KR    F  L+                S 
Sbjct: 4   GLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPNSNSTTSP 63

Query: 52  SNSYVSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHIN 111
           S   V  G+ ++    +  QGSL  T +  DLAI G GFF ++  D     TR G F ++
Sbjct: 64  SGGQVGLGVRVNETYTVFTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVD 123

Query: 112 NEGFLENVAGGVLLGY 127
            EG L    G  +L  
Sbjct: 124 EEGQLVTSNGYPVLDS 139



 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 303 PGKPKDFSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDIS 361
           P      ++ KDG V +     T  V + ++ +    +   LK    N Y  T  SG I 
Sbjct: 147 PNNAGSITIGKDGTVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASGPIV 206

Query: 362 IGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
            G PG N  G I  G LE +NV++  E+T++IEAQR Y  NSKV QT  + +    +L R
Sbjct: 207 -GVPGDNGFGAIRQGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265


>gnl|CDD|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility and
           secretion].
          Length = 251

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 9   TAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMI 68
           TAM        + +  ++N+AN  T G++    A  ++     S    +  +  ST    
Sbjct: 7   TAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLPTRTFVM-ASTPGTD 65

Query: 69  SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYP 128
              GSL +T    D+AIQG G+  V+  D     TR G+  I+  G L       + G+P
Sbjct: 66  MSPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATGQL------TIQGHP 119

Query: 129 LKNASAPLIV 138
           +     P+ V
Sbjct: 120 VIGEGGPITV 129



 Score = 36.1 bits (83), Expect = 0.018
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 328 PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387
            + RL +     ++  +  DG   L T ++          +    + SGALE +NV+   
Sbjct: 157 VVGRLKLVQATGQEVQRGDDGLFRL-TAETQQPRGQVLKADPSVRVMSGALEGSNVNAVE 215

Query: 388 ELTELIEAQRNYAVNSKVFQTGSD 411
           E+T++I   R + +  K+  T  D
Sbjct: 216 EMTDMISLARQFEMQMKMISTADD 239


>gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility
          and secretion].
          Length = 137

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 1  MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNS 54
          M +      A S + AQS R++ +S NIAN D+        Y+R  + FS+ +F   + +
Sbjct: 1  MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELF---APT 57

Query: 55 YVSGGLEISTKDMISEQGSLMH 76
            +GG  +    ++ +      
Sbjct: 58 GATGGAGVKVSKIVEDPSPFKL 79



 Score = 34.9 bits (80), Expect = 0.049
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFM 413
           G ++  NV++  E+ ++I A R+Y  N +V  T    M
Sbjct: 92  GYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMM 129


>gnl|CDD|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein. 
          Length = 31

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 7  MKTAMSGMDAQSNRVSAVSDNIANVDTVGYK 37
          + TA+S ++AQ   +  +++NIAN +T GYK
Sbjct: 1  LYTAVSALNAQQIALDVIANNIANANTTGYK 31


>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility
          and secretion].
          Length = 552

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 1  MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKR 38
          M +   + TA+SG++A    +     NI+N +T GY R
Sbjct: 1  MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSR 38



 Score = 34.2 bits (78), Expect = 0.067
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 383 VDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
           V++  E+  LI+ Q+ Y  ++KV QT  + +D L+++  
Sbjct: 514 VNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIVG 552


>gnl|CDD|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and
          secretion].
          Length = 133

 Score = 37.2 bits (86), Expect = 0.009
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISE 70
           +D +S R   +++NIAN DT GYK   + F S++  + + +  +  L  ++   +  
Sbjct: 14 ALDVRSLRQEVIANNIANADTPGYKAKDVDFESVLKKALAGNNTTLALAKTSTRHLGP 71


>gnl|CDD|37722 KOG2511, KOG2511, KOG2511, Nicotinic acid phosphoribosyltransferase
           [Coenzyme transport and metabolism].
          Length = 420

 Score = 28.8 bits (64), Expect = 2.7
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 40  AIAFSSLVFPSTSNSYVSGG------LEISTKDMISEQGSLMHTASNTDLAIQGKG---- 89
           AI+  S+VF       + G        EI   +++SE        ++    +QG+     
Sbjct: 100 AISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSE-AYFKFVDADWHREVQGEKAEFL 158

Query: 90  -FFIVKGRDNVNCLTRAGDFHINNEGFL--ENVAGGVLLGYPLKNASAPLIVNSFQGLER 146
            F   + R     +  +   ++   GFL   NV      G P++   A   V  F  ++ 
Sbjct: 159 EFGTRRRRGPQGAMKASKYCYLG--GFLGTSNVLFAKKYGIPVRGTVAHEWVMGFASIDE 216

Query: 147 INVKHAELSAMPTTTGFISNNL 168
           I  K   ++    T  F ++N+
Sbjct: 217 IYDKANRIADGKWTCTFGASNV 238


>gnl|CDD|145709 pfam02699, YajC, Preprotein translocase subunit.  See.
          Length = 83

 Score = 27.8 bits (63), Expect = 6.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 313 KDGYVDIIYDDGTRVPIYRLAIATV 337
            D  V +   DG +V + + AIA V
Sbjct: 58  DDDTVVLEIADGVKVKVDKSAIARV 82


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,667,670
Number of extensions: 240661
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 18
Length of query: 421
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,189,273
Effective search space: 1361513725
Effective search space used: 1361513725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)