RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE
[Candidatus Liberibacter asiaticus str. psy62]
(421 letters)
>gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated.
Length = 407
Score = 392 bits (1009), Expect = e-110
Identities = 143/422 (33%), Positives = 209/422 (49%), Gaps = 21/422 (4%)
Query: 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS--TSNSYVSGGLEI 62
S TA+SG++A SNR+ + +NIAN +T G+K + F+ L S T+ + V G+++
Sbjct: 1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTNPTQVGSGVKV 60
Query: 63 STKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGG 122
+ QGS+ T ++ DLAI G GFF+V TRAG F ++ G+L N AG
Sbjct: 61 AGVAQQFSQGSITSTGNSLDLAISGNGFFVVSN-GGNGFYTRAGAFKLDKNGYLVNAAGY 119
Query: 123 VLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKTPK 182
L GYP GL +N+ L+ TT+G NL A D
Sbjct: 120 YLQGYPADADGGTPPTV-GAGLVPLNIPTTALAPKATTSGTFQGNLPSTAAFDPTD---- 174
Query: 183 HNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242
Y H +S YD+LG+S DVY+ KTGD WEV ++ + +
Sbjct: 175 ----PDTYNHSTSLTVYDSLGNSHTLDVYFVKTGDNTWEVYVYDDGKPVS----TTATGT 226
Query: 243 NTVEVSFDPVTGYL--ANSSHKAISFNDNTSGID--QQITIDISKTTQLAGGFIPQKSEI 298
T ++FD G L S T+G D Q IT+D+S +TQ A GF +
Sbjct: 227 GTTTLTFDS-NGALTTTTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQ 285
Query: 299 NGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSG 358
+G+APG +S+ DG V +Y +G P+ ++A+A + D L GN + T SG
Sbjct: 286 DGYAPGTLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASG 345
Query: 359 DISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418
IG G G I SGALE++NVD+++EL +I AQRNY N+K +T + L++
Sbjct: 346 VALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVN 405
Query: 419 LK 420
L+
Sbjct: 406 LR 407
>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated.
Length = 402
Score = 183 bits (466), Expect = 9e-47
Identities = 128/416 (30%), Positives = 194/416 (46%), Gaps = 24/416 (5%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEI-ST 64
S A+SG++A + +++ +S+NIAN T G+K + FSS+ N GG+E+ S
Sbjct: 2 SFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIY-----NGGQPGGVEVSSV 56
Query: 65 KDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL 124
S+ GSL +T DLAI G GFF++K D TRAG F + +G+L + G L
Sbjct: 57 SQNFSKDGSLTYTGRGLDLAISGGGFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKL 116
Query: 125 LGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTT-GFISNNLDKNATIITPDKTPKH 183
GYP+ +A+ L + L+ V+ A L A T F++N LD + T I P +P
Sbjct: 117 QGYPV-DAAGNLQTGNVSDLQ---VQTASLPAKATDQLDFVAN-LDASVTPIDPSVSPFD 171
Query: 184 NGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLN 243
+ Y ++ YD+LG+ Y+ KT +W V +V P
Sbjct: 172 PTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGG--------DVTPPL 223
Query: 244 TVEVSFDPVTGYLANSSHKAISFNDNT---SGIDQQITIDISKTTQLAGGFIPQKSEING 300
+ FD TG L I+ + D I ID + +TQ A F +++ NG
Sbjct: 224 GHTLQFD-DTGALIPGKGSTINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNG 282
Query: 301 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI 360
+ G+ + +G V Y +G R ++ +A + + L + + SG
Sbjct: 283 YTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFANPNGLVTVSNTAWSASNKSGAP 342
Query: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDIL 416
+G PG G + SGALE +NVDI +EL L+ AQRNY N+KV T L
Sbjct: 343 ILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQAL 398
>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins. This
model encompasses three closely related flagellar
proteins usually denoted FlgE, FlgF and FlgG. The names
have often been mis-assigned, however. Three equivalog
models, TIGR02489, TIGR02490 and TIGR00488,
respectively, separate the individual forms into three
genome-context consistent groups. The major differences
between these genes are architectural, with variable
central sections between relatively conserved N- and
C-terminal domains. More distantly related are two other
flagellar apparatus familis, FlgC (TIGR01395) which
consists of little else but the N-and C-terminal domains
and FlgK (TIGR02492) with a substantial but different
central domain.
Length = 231
Score = 127 bits (322), Expect = 4e-30
Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
Query: 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS-NSYVSGGLEIS 63
++ TA+SG++AQS+ + +++NIANV+T G+KR+ F L+ S S + V GG+ S
Sbjct: 1 MALYTALSGLNAQSSALDVIANNIANVNTTGFKRSRAEFQDLLSQSGSGSGQVGGGVRAS 60
Query: 64 TKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGV 123
QG+L T ++ DLAI G GFF+V+G D TRAG+F ++ +G+L N G
Sbjct: 61 GVAQDFSQGNLQPTGNSLDLAISGDGFFVVQGPDGTA-YTRAGNFQLDADGYLVNPDGYY 119
Query: 124 LLG 126
LL
Sbjct: 120 LLA 122
Score = 100 bits (250), Expect = 1e-21
Identities = 41/95 (43%), Positives = 55/95 (57%)
Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGH 367
S+ DG V Y +G V + ++A+A P+ D L+ GN Y TRDSG +G G
Sbjct: 137 SVSIGSDGTVSATYSNGQTVTLGQIALANFPNPDGLRKEGGNLYSATRDSGAALVGAAGT 196
Query: 368 NQHGEIFSGALETANVDIASELTELIEAQRNYAVN 402
G I SGALE++NVD+A+EL +I AQR Y N
Sbjct: 197 GGFGSIQSGALESSNVDLAAELVNMIVAQRAYQAN 231
>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 256
Score = 88.6 bits (220), Expect = 3e-18
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSL--VFPSTSNSYVSG----- 58
+ TA+SGM + +++N+ANV+TVGYK +AF S V + V
Sbjct: 4 GLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKVGNKNVKN 63
Query: 59 -------GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHIN 111
G +I + + QG + T TD AIQG+GFF V+ N TR G FH++
Sbjct: 64 IIGGLSMGSKIDEVNTLFTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVD 123
Query: 112 NEGFLENVAGGVLLG 126
+G+L N +G +LG
Sbjct: 124 TQGYLVNDSGYYVLG 138
Score = 34.7 bits (80), Expect = 0.048
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 307 KDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGD--ISIGF 364
FS DG + + DG Y+ +A D N Y + GD +
Sbjct: 154 GKFSTDADGNISL---DG--NASYKFNVA-----------DFNDYNSLKKIGDNLYTGNN 197
Query: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQ 407
P + + +LE +NV++ +E+ ++ R++ N K+ Q
Sbjct: 198 PQNINGAIVRQNSLEKSNVNVTNEMVNMMTTMRSFETNQKIVQ 240
>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG,
Gram-negative bacteria. This family consists of the
FlgG protein of the flagellar apparatus in the
Proteobacteria and spirochetes.
Length = 259
Score = 87.4 bits (217), Expect = 6e-18
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY-- 55
++ TA +GM+AQ + +S+N+ANV+T G+K+ F L++ S+
Sbjct: 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTERQPGAQSSEQQTIL 60
Query: 56 -----VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHI 110
V G+ + + QGSL +T ++ DLAI+G+GFF V D TR G F I
Sbjct: 61 PVGVQVGLGVRVVATQKLFTQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKI 120
Query: 111 NNEGFLENVAGGVLL 125
N EG L G L
Sbjct: 121 NAEGQLVTSNGYPLQ 135
Score = 73.9 bits (182), Expect = 8e-14
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 303 PGKPKDFSVSKDGYVDIIYDDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDIS 361
P +V DG V + T + ++ +AT + L+ N + T SG
Sbjct: 141 PENATSITVGSDGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQ 200
Query: 362 IGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
IG PG + G++ G LE +NV++ E+ ++I AQR Y +NSK Q + + L
Sbjct: 201 IGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 85.9 bits (213), Expect = 2e-17
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV--------FPSTSNSY 55
L + + SGM+AQ ++ ++S+N+ANV+T GYKR ++FS LV +P+
Sbjct: 2 LRAFWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETLDRKGYPTNDKPE 61
Query: 56 VSGGLEISTKDMI--SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113
+ G + + I ++QG+L+ T + TDLAI G+GFF V D TRAG+F+I++
Sbjct: 62 IITGTGVKATNWIRDNQQGNLLTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSN 121
Query: 114 GFL 116
G L
Sbjct: 122 GML 124
Score = 54.7 bits (132), Expect = 4e-08
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 296 SEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTR 355
N + +F+V +DG + + DG + ++ I D N Y+P+
Sbjct: 141 GINNRNTGFDSNNFTVDEDGGISVKNVDGQNKKVGKINIYNAVGNDAFISIGDNLYVPSD 200
Query: 356 DSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDI 415
N +I G LE +NVD+ E+T++I QR + ++SK +T + I
Sbjct: 201 GVQ------VFLNNDVDILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGI 254
Query: 416 LISLKR 421
+ ++++
Sbjct: 255 INNMRK 260
>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 85.3 bits (212), Expect = 2e-17
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY-- 55
++ A +GM AQ V +S+NIAN++T G+KR F L++ S+ N
Sbjct: 3 ALSIAATGMAAQQLNVEVISNNIANMNTTGFKRQRAEFQDLLYQQERRVGAQSSDNGTIV 62
Query: 56 -----VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHI 110
+ G++ + I QG+L T ++ DLAIQG+G+F ++ D TRAG F+
Sbjct: 63 PTGVQLGLGVKTAAVRRIHTQGTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRAGAFNR 122
Query: 111 NNEG 114
+ +G
Sbjct: 123 SADG 126
Score = 74.2 bits (183), Expect = 6e-14
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 308 DFSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPG 366
+++ G V D T+ + ++ +A +E L+ N + T SG +G PG
Sbjct: 148 SITINASGQVSATLDGQTQPQLLGQITLARFTNEAGLEAIGDNLFRETPASGAPQVGVPG 207
Query: 367 HNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
+ G I G LE +NVD+ E+T+LI AQR Y +NSKV + + R
Sbjct: 208 EDGFGTIRQGYLEASNVDVVKEITDLITAQRAYEMNSKVITAADEMLQTTSQNLR 262
>gnl|CDD|183640 PRK12636, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 263
Score = 85.2 bits (211), Expect = 3e-17
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 303 PGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISI 362
P + FS+ DG V + G ++ +AT + D L+ N Y T +SG S
Sbjct: 145 PTDAQSFSIGADGTVSYVDAGGELQTAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSA 204
Query: 363 GFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
PG G+I SGALE +NVD+A E TE+I AQR + N+++ T + + L++LKR
Sbjct: 205 VVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 263
Score = 77.9 bits (192), Expect = 5e-15
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSG---- 58
+L SM + +SGM ++ + +NIANV+T G+K++ + F +V + S +
Sbjct: 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSQTISGASGPTANRG 60
Query: 59 ---------GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFH 109
G ++ D I QGSL T DLAI G GFF V DN TRAG+F+
Sbjct: 61 GVNSKQVGLGSQLGAIDTIHTQGSLQTTGRPLDLAISGDGFFRVGDGDNT-AYTRAGNFY 119
Query: 110 INNEGFLENVAGGVLLG 126
++NEG + N G LLG
Sbjct: 120 LDNEGNIVNADGLYLLG 136
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 261
Score = 83.0 bits (206), Expect = 1e-16
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 21/136 (15%)
Query: 9 TAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSYVSGGL 60
A +G+DAQ + +S+N+ANV+T G+K++ F L++ S+ N+ + GL
Sbjct: 7 IAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSSQNTTLPSGL 66
Query: 61 EI-------STKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113
++ +T+ + + QG+L T ++ D+AI+G+GFF V+ D TR G F ++ +
Sbjct: 67 QVGTGVRPVATQKIFT-QGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQD 125
Query: 114 GFLENVAGGVLLGYPL 129
G L GYPL
Sbjct: 126 GQLVTSG-----GYPL 136
Score = 69.5 bits (171), Expect = 1e-12
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 307 KDFSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFP 365
++ DG V + + ++ + + L+ N YL T SG G P
Sbjct: 147 TSITIGTDGTVSVTQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTP 206
Query: 366 GHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
G N G + G LET+NV++ EL +I QR Y +NSK T + + L
Sbjct: 207 GLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 81.0 bits (200), Expect = 6e-16
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP--------STSNSYVS 57
S+ A +G++AQ ++ +S+N+ANV T G+KR+ F L++ ST + +
Sbjct: 4 SLWIAKTGLNAQQAQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSTQQTELP 63
Query: 58 GGLEIST------KDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHIN 111
GL++ T + + QG+L T ++ D+AI G+GFF V D TR G F N
Sbjct: 64 SGLQLGTGVRQVATERLFTQGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTN 123
Query: 112 NEGFLENVAGGVLL 125
+G L +G L
Sbjct: 124 AQGQLVTSSGYPLQ 137
Score = 70.9 bits (174), Expect = 6e-13
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 274 DQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR-VPIYRL 332
D + + G+ P + I P ++ KDG V + + V I +L
Sbjct: 117 DGSFQTNAQGQLVTSSGY-PLQPAIT--IPQNATSLTIGKDGTVSVTQPGSSNAVQIGQL 173
Query: 333 AIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTEL 392
+AT + L+ N + T SG ++ PG N G + G +E +NV++ EL +
Sbjct: 174 QLATFINPAGLQAKGENLFAETTSSGAPNVSQPGLNGAGTLNQGYVEASNVNVVEELVNM 233
Query: 393 IEAQRNYAVNSKVFQTGSDFM 413
I+ QR Y +NSK T SD M
Sbjct: 234 IQTQRAYEINSKAVTT-SDQM 253
>gnl|CDD|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 264
Score = 80.6 bits (199), Expect = 6e-16
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY-- 55
S+ TA SGM+AQ + +++N+ANV+T G+K+ F L++ P+T ++
Sbjct: 4 SLWTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDTVTP 63
Query: 56 ----VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHIN 111
V G++++ + EQGSL T + D+AI+G+GFF + D TR G F I+
Sbjct: 64 LGVQVGHGVKVAATQRLFEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKID 123
Query: 112 NEGFLENVAGGVLL 125
G L G LL
Sbjct: 124 ANGQLVTSNGYRLL 137
Score = 64.1 bits (156), Expect = 6e-11
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 310 SVSKDGYVDI-IYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHN 368
++S++G V + + +D + + ++ + + L N + T SG G PG
Sbjct: 152 TISEEGIVSVKVGEDNDPIELGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSE 211
Query: 369 QHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
G + G LE +NV I E+ +I AQR Y +NSK QT + + +LKR
Sbjct: 212 GFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264
>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional.
Length = 473
Score = 79.8 bits (196), Expect = 1e-15
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 23/229 (10%)
Query: 196 FAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGY 255
FA +G+ VY+VYY G P V + ++FD
Sbjct: 264 FAKRPAVGTESVYEVYYVLDGQ------------------PMQVNGGASQTLNFDTAGNL 305
Query: 256 LANSSHKAISFND---NTSGIDQ-QITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSV 311
L ++F + N + D IT+ + TQ F P+ + NG++ G+ SV
Sbjct: 306 LNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQ-NGYSSGEFMGLSV 364
Query: 312 SKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHG 371
KDG + Y +G I L +A + L+ N ++ T +SG ++G PG N
Sbjct: 365 GKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLA 424
Query: 372 EIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
I ALE +NVD++ EL +I AQR Y N++ +T + M +L++++
Sbjct: 425 TIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR 473
Score = 70.6 bits (172), Expect = 8e-13
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 13/177 (7%)
Query: 10 AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS 69
+SG++A S + + +NIAN TVG+K A +F+ + ++S V G+++S +
Sbjct: 6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVY----ASSRVGLGVKVSAINQRF 61
Query: 70 EQGSLMHTASNTDLAIQ-GKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYP 128
G++ T D+AI GKGFF + + +R G+F ++ ++ N G L GYP
Sbjct: 62 TVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYP 121
Query: 129 LKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNG 185
A + + + ++ T+T + NL+ NA +I P+ TP +G
Sbjct: 122 AGGVGAQPV--------DLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPAVDG 170
>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon
proteobacterial. Members of this family are flagellar
hook proteins, designated FlgE, as found in the epsilon
subdivision of the Proteobacteria (Helicobacter,
Wolinella, and Campylobacter). These proteins differ
significantly in architecture from proteins designated
FlgE in other lineages; the N-terminal and C-terminal
domains are homologous, but members of this family only
contain a large central domain that is surface-exposed
and variable between strains.
Length = 719
Score = 79.2 bits (195), Expect = 2e-15
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 15/262 (5%)
Query: 171 NATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQS 230
N +T + K + + H + D+LGS +V + K G +W I + +
Sbjct: 462 NTGPLTEGGSIKESEQLKLAAHSAGLDIVDSLGSKHTLEVQFVKQGGNEWSFIIRVPEPA 521
Query: 231 TNNSFP---YNVAPLNTVEVSFDPVTGYLANSSHKAISFN-DNTSGIDQQITIDISKTTQ 286
N N+ + D G LA + I F+ N + Q+I + T+
Sbjct: 522 EFNGGSGEGPNIFEGGRARFNND---GSLAGMNPPTIQFSPKNGAAPPQRIKLSFG-TSG 577
Query: 287 LAGGFIPQKSE-------INGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPS 339
G NG+ G KD +G + + +G + ++A+A+ +
Sbjct: 578 TFDGLTSSDKASTTTGIAQNGYQSGNLKDIRFDSNGNLLGEFSNGKTFALAQVAMASFAN 637
Query: 340 EDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNY 399
L+ GN + T +SG+ +G G GE+ + ALE +NVD++ LT+LI QR +
Sbjct: 638 NSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEMSTSALEMSNVDLSRSLTQLIVVQRGF 697
Query: 400 AVNSKVFQTGSDFMDILISLKR 421
NSK T ++ L+ LK+
Sbjct: 698 QANSKTVTTSDQILNTLLQLKQ 719
Score = 65.7 bits (160), Expect = 2e-11
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAF----SSLVFPSTS------ 52
+L S+ + +SGM A + +NIANV+T G+K + F S V +TS
Sbjct: 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVKIATSPYDGLG 60
Query: 53 --NSYVSG-GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKG-RDNVNCLTRAGDF 108
N G G+ IS+ I QGS+ T S TD+AI G GFFIV N TR G F
Sbjct: 61 GQNDLSIGLGVSISSTTKIFSQGSVQTTNSKTDVAINGDGFFIVSDDGGLTNYYTRDGAF 120
Query: 109 HINNEGFLENVAGGVLLGY--PLKNASAPLIVN 139
+ G N +G ++ G+ PL+ A + + +
Sbjct: 121 KFDAYGNFVNNSGYIVQGWNRPLEAAESGTMSD 153
>gnl|CDD|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated.
Length = 731
Score = 77.8 bits (192), Expect = 5e-15
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 20/246 (8%)
Query: 191 THKSSFAAYDTLGSSVVYDVYYTKT-----GDKKWEVSIFRQDQSTNNS----FPYNVAP 241
TH +S YD+LGS + + K+ G +W + I + + N P N
Sbjct: 489 THAASIDIYDSLGSKHTLRIEFYKSSTTQDGGAEWNMIIIVPEPAEINGGSEGRPNNFE- 547
Query: 242 LNTVEVSFDPVTGYLANSSHKAISFN-DNTSGIDQQITIDISKTTQLAGGFIPQKS---- 296
+ F+ G LA + + F+ +N + Q+I + + G K
Sbjct: 548 --GGRLRFNN-DGSLAGMNPPTLQFDPNNGAAAPQRINLSFGTSGSFDGLTSVDKISETY 604
Query: 297 --EINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPT 354
E +G+ G D DG + + +G + ++A+A + L+ GN + T
Sbjct: 605 AIEQDGYTAGDLMDIRFDSDGTILGAFTNGRTFALAQVALANFANNAGLQAEGGNVFSQT 664
Query: 355 RDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMD 414
+SG IG G G I LE +NVD++ LT+LI QR + NSK T ++
Sbjct: 665 ANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLN 724
Query: 415 ILISLK 420
L+ LK
Sbjct: 725 TLLQLK 730
Score = 69.3 bits (170), Expect = 2e-12
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST-------------S 52
S+ + +SG+ A + +NIANV+T G+K + +F + T
Sbjct: 4 SLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDM-LSQTKLIATAPKGGLGGQ 62
Query: 53 NSYVSG-GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKG-RDNVNCLTRAGDFHI 110
N G G+ +S+ I QGS+ +T NTDLAIQG GFFIV TR GDF
Sbjct: 63 NDMQIGLGVGVSSTTKIFSQGSIQNTDKNTDLAIQGDGFFIVSPDGGTTRNYTRDGDFKF 122
Query: 111 NNEGFLENVAGGVLLGY 127
+ +G N G V+ G+
Sbjct: 123 DAQGNFVNNGGYVVQGW 139
>gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 238
Score = 68.9 bits (169), Expect = 2e-12
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 9 TAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV--FPSTSNSYVSGGLEISTKD 66
T ++ + V++NIAN T G++R + FS V S S D
Sbjct: 7 TTLTRQSGLMREMQVVANNIANASTTGFRREGLVFSEYVKSLDSGEASLSMARASGRQTD 66
Query: 67 MISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLL 125
+ EQG L T D AI+G+GFF+V+ LTRAG F N EG L + G LL
Sbjct: 67 L--EQGGLTQTGGQFDFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELVDPDGNRLL 122
Score = 35.0 bits (81), Expect = 0.032
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 303 PGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISI 362
P + +V DG + DG P+ ++ + L+ G + + G
Sbjct: 132 PPDARSVAVGADG---TLSADGQ--PLGQIGLYQPTDPLGLRREGGTRFRA--EGGVEPA 184
Query: 363 GFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMD 414
+ + G LE +NV+ SE+ +IE QR Y + G F+D
Sbjct: 185 ------EGARLLQGFLEGSNVNPVSEIARMIEVQRAY-------ELGQSFLD 223
>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 241
Score = 68.9 bits (169), Expect = 3e-12
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN--SYVSGGLEIS 63
+ A+S A R+ ++DN+ANV+TVG++ T + F ++V + S ++VS G
Sbjct: 4 GLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQG---- 59
Query: 64 TKDMIS-EQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGG 122
K +S E G L T + D A++G +F TR G F + + G L +V
Sbjct: 60 -KSYLSTEAGPLTKTGNPLDFAVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELVSVT-- 115
Query: 123 VLLGYPLKNA-SAPLIVNSFQG 143
GYP+ +A AP+ +N G
Sbjct: 116 ---GYPVLDAGGAPIQLNPGGG 134
Score = 33.1 bits (76), Expect = 0.14
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 310 SVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDS----GDISIGFP 365
++ DG IY +G V + + + + ++ L + + +P + S+G
Sbjct: 137 TIGADG---AIYQNG--VQVGAIGLFEIDADAGLLRYGNSGVIPDKPPQPVVDRNSVGV- 190
Query: 366 GHNQHGEIFSGALETANVDIASELTELIEAQRNY-AVNSKVFQTGSDFMD 414
G LE +NV+ +E+T+LI R + +V+S + Q+ S +
Sbjct: 191 --------VQGYLEGSNVNAMTEMTQLISVSRAFESVSSLMRQSESSVSE 232
>gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated.
Length = 603
Score = 68.7 bits (168), Expect = 3e-12
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 28/222 (12%)
Query: 217 DKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQ 276
++ WEV + D N P N P V FD + ++ + F N
Sbjct: 393 NQTWEVKSYIVDPK--NKTPINTDPT-WEIVGFD--ATHKMKAAPMTLDFKGNK------ 441
Query: 277 ITIDISKTTQL-AGGFIPQKSEI-----NGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIY 330
+T + K+ + Q S++ +G G +D + ++G + + + +G P+
Sbjct: 442 LTYSLDKSEDHDSSNLSYQDSKLLEASQDGKPRGILRDVRIDENGVISLAFSNGVVEPMG 501
Query: 331 RLAIATVPSEDNLKLFDGNTYLPTRDS--GD--ISIGFP-------GHNQHGEIFSGALE 379
R+ IA ++ L+ GN + + G+ G P G + G++ LE
Sbjct: 502 RIGIAAFTNDQGLRKVGGNLFEMQEGTINGENRPLSGNPILGWDEEGKLKFGKVRHKYLE 561
Query: 380 TANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
T+NVD + LT LI QR Y++N++ F TG D + ISLK+
Sbjct: 562 TSNVDAGNALTNLILMQRGYSMNARAFGTGDDLIKEAISLKK 603
Score = 53.7 bits (129), Expect = 9e-08
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAF--------SSLVFPSTSNSYV 56
++ A SG+ + ++S+NIANV+T+GY+ F +L S +
Sbjct: 3 DTLLNAYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSHLDALNAKSVVANDR 62
Query: 57 SGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDN--------------VNCL 102
+ G+ S+ + ++ G + +A QGKG+F+V N N
Sbjct: 63 NYGVTGSSNAISNKDGEYKPSDGEFHMAYQGKGWFVVGPNKNGSMTINKDGFSKKQDNYF 122
Query: 103 TRAGDFHINNEGFLENVAGGVLLGYPLK 130
TR G F + +G+L N G + G L
Sbjct: 123 TRDGSFARDADGYLVNPEGYYVYGIDLG 150
>gnl|CDD|148912 pfam07559, FlaE, Flagellar basal body protein FlaE. This family
consists of several bacterial FlaE flagellar proteins.
These proteins are part of the flageller basal body rod
complex.
Length = 117
Score = 67.4 bits (165), Expect = 7e-12
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 190 YTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSF 249
Y H +S YD+LG+ VY+ KTGD W V T ++F
Sbjct: 9 YNHSTSVTVYDSLGNKHTLTVYFVKTGDNTWTV----YVTVDGTPGGGTATAPATGTLTF 64
Query: 250 DPVTGYLANSSHKAISFNDNTSGID-QQITIDISKTTQLAGGFIPQKSEINGH 301
D S+ + N G Q IT+D+S TQ A F +G+
Sbjct: 65 DSDGKLGTTSTAATTGISANVGGAAPQAITLDLSGLTQFASDFSVSALSQDGY 117
>gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 64.9 bits (158), Expect = 4e-11
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSG------- 58
++ A +GM AQ + +++NIAN++T G+K F+ L++ + V
Sbjct: 3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQEAV 62
Query: 59 ------GLEISTKDM--ISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHI 110
GL + + + QGSL T + DLA+ G+G+F V + TRAG F+
Sbjct: 63 PEGAMLGLGVRAAAIRNLHRQGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNK 122
Query: 111 NNEGFLENVAGGVL 124
N G L + G +
Sbjct: 123 NAAGQLVTMEGYAV 136
Score = 63.3 bits (154), Expect = 1e-10
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 323 DGTRVP--IYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380
DG P + +L +A +E L+ Y T SG +G PG G+I G LE
Sbjct: 162 DGQVAPQNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEG 221
Query: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418
+NVD E+T LI AQR + +NSKV Q +D M +S
Sbjct: 222 SNVDPVKEITSLITAQRAFEMNSKVIQ-AADEMAGTVS 258
>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 246
Score = 64.5 bits (158), Expect = 4e-11
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 9 TAMSG----MDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSL-VFPSTSNSYVSGGLEIS 63
TAMSG ++ Q+ V++N+AN T G++ ++ VF + V
Sbjct: 7 TAMSGASQNLNQQA----VVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTP 62
Query: 64 TKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGV 123
D G L T D+A+QG G+ V+ D TR G ++ G L G
Sbjct: 63 GADF--SPGPLQTTGRPLDVALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLP 120
Query: 124 LLG 126
+LG
Sbjct: 121 VLG 123
Score = 35.6 bits (83), Expect = 0.022
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 375 SGALETANVDIASELTELIEAQRNYAVNSKVFQTGSD 411
SGALE +NV+ E+ +I R + + K+ +T +
Sbjct: 198 SGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234
>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC;
Provisional.
Length = 130
Score = 51.7 bits (124), Expect = 4e-07
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGG---L 60
S+ + SGM AQ+ R+ VS+NIAN DT GY+R ++F + VS G L
Sbjct: 5 SKSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEARDFDPGSGLVSTGPVRL 64
Query: 61 EISTKDMISEQGSLM------HTASNTDLAIQ 86
+ S I + + + SN DL ++
Sbjct: 65 DRSELPRIYDPSHPLADETGYYDGSNVDLVVE 96
Score = 38.2 bits (89), Expect = 0.003
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVF----QTGSDFMDIL 416
P H E +G + +NVD+ E+ + EAQR+Y N ++F Q S +D+L
Sbjct: 75 PSHPLADE--TGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLLDLL 128
>gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078). This
family consists of a number of C-terminal domains of
unknown function. This domain seems to be specific to
flagellar basal-body rod and flagellar hook proteins in
which pfam00460 is often present at the extreme N
terminus.
Length = 39
Score = 49.4 bits (119), Expect = 1e-06
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419
+NVD+ E+ LIEAQR Y N+KV QT + + L++L
Sbjct: 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39
>gnl|CDD|162884 TIGR02490, flgF, flagellar basal-body rod protein FlgF. Members of
this protein are FlgF, one of several homologous
flagellar basal-body rod proteins in bacteria.
Length = 89
Score = 49.6 bits (119), Expect = 2e-06
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 307 KDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPG 366
++ DG I DG V RL + + + L+ + T +
Sbjct: 7 GPITIGADG---TISQDGQEVG--RLGLVNFDNPNQLQREGDGLFRATGAGPAPADSNVR 61
Query: 367 HNQHGEIFSGALETANVDIASELTELIEAQRNY 399
+ G LE +NV+ SE+ ++IEAQR Y
Sbjct: 62 ------VVQGYLEGSNVNAVSEMVDMIEAQRAY 88
>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 135
Score = 47.5 bits (114), Expect = 6e-06
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSS 45
M + S A SG+ AQS R++ +S NIAN D+ Y+R + F++
Sbjct: 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA 51
Score = 33.6 bits (78), Expect = 0.10
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 382 NVDIASELTELIEAQRNYAVNSKVFQT 408
NV++ E+ ++I A R+Y N +V
Sbjct: 95 NVNVVVEMVDMISASRSYEANVEVLNA 121
>gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 253
Score = 45.5 bits (108), Expect = 3e-05
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 24 VSDNIANVDTVGYKRTAIAFSSLVFPSTSN----------SYVSGGLEISTKDMISEQGS 73
V++N+ANV+T G+K + F + P SYV + D+ QG
Sbjct: 22 VANNVANVNTNGFKARSSLFQEYLMPGAHEDNFQRPDRRVSYVQD--RGTPLDL--SQGP 77
Query: 74 LMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLG 126
L T + D+AI G F V+ TR G IN +G L G +LG
Sbjct: 78 LEQTKNPLDVAIDGDAFLAVQ-TPQGERYTRDGALEINAQGQLVTSDGYPVLG 129
Score = 29.3 bits (66), Expect = 1.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSD 411
G +E +NV+ E+T ++E R Y S + Q SD
Sbjct: 204 GYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSD 239
>gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB. This
model represents FlgB, one of several components of
bacterial flagella that share a domain described by
pfam model pfam00460. FlgB is part of the basal body.
Length = 131
Score = 43.9 bits (104), Expect = 7e-05
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKD---MIS 69
+D +S R +++NIANVDT GYK ++F + + S S T ++
Sbjct: 11 ALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAELKKSLDKQRNSTLTLALTDTNPRHLN 70
Query: 70 EQGSLMHTAS 79
Q S S
Sbjct: 71 AQDSNSVEPS 80
>gnl|CDD|183769 PRK12819, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 257
Score = 42.9 bits (101), Expect = 2e-04
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL--E 61
+GSM GM R++ S+N+AN T G+K A +S VF G
Sbjct: 6 IGSM-----GMMNYMQRINVHSNNVANAQTTGFK--AENMTSKVFDVQDTYRRGDGAVTN 58
Query: 62 ISTKDMISE---------QGSLMHTASNTDLAIQ----GKGFFIVKGRDNVNCLTRAGDF 108
I + D QG++ T S+TD + G F V ++ LTR G F
Sbjct: 59 IGSVDYAVVPAATHVNLVQGNIQMTNSDTDFFLDDGPAGTSSFFVTSKNGETFLTRDGSF 118
Query: 109 HINNEGFLENVAGGVLLG 126
+N++ +L+ +G ++G
Sbjct: 119 TLNSDRYLQTASGAFVMG 136
Score = 32.5 bits (74), Expect = 0.19
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 320 IYDDGTRVPIYRLAIATVPSEDNLKLF-DGNTYLPTRDSGDISIGFPGHNQHGEIFSGAL 378
+YD T+ I RL TV +E N +L N T G+I P N G + +G L
Sbjct: 158 LYDAVTQNNIARLQTKTVSAEQNDRLVQRENKSF-TLAEGNI-ANLP--NGQGIVKNGML 213
Query: 379 ETANVDIASELTELIEAQR 397
E +NVD+ E+ +L+ QR
Sbjct: 214 ENSNVDMTKEMADLMTDQR 232
>gnl|CDD|105809 PRK12641, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 252
Score = 41.9 bits (98), Expect = 4e-04
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEI 62
I SM A ++ Q+ +++N+AN+ T G+K I + + N Y
Sbjct: 5 IYKSMIAANKLLEKQA----IIANNLANISTTGFKEKFILA--IQNHNVKNLY------- 51
Query: 63 STKDMISEQ------GSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFL 116
++ I+++ G+L +T N DL I+ G+ +K + T+ G IN++ L
Sbjct: 52 NSDKKITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKL 111
>gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 138
Score = 40.5 bits (95), Expect = 9e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVG-------YKRTAIAFSS 45
S + A SG++AQS R+ VS+N+AN + G Y R + F +
Sbjct: 8 SSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRA 54
>gnl|CDD|180871 PRK07191, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 456
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKD 66
++TA SGM A ++A S NIAN+ T GY R + S++ G+ +
Sbjct: 4 IRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQGGVNAGNGVNVDGIR 63
Query: 67 MISEQ 71
+S+Q
Sbjct: 64 RLSQQ 68
>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 483
Score = 39.9 bits (94), Expect = 0.001
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKR 38
M + ++ TA SG+ A S + S VS NIAN T GY R
Sbjct: 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANAGTPGYSR 38
Score = 31.4 bits (72), Expect = 0.41
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 377 ALETAN-VDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419
AL A VD E+ L++ +++YA ++KV T + +D L+
Sbjct: 439 ALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSLLDA 482
>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC. This
model represents FlgC, one of several components of
bacterial flagella that share a domain described by
pfam model pfam00460. FlgC is part of the basal body.
Length = 135
Score = 39.3 bits (92), Expect = 0.002
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVS 57
+ S + AQ R++ VS N+AN D+ Y+R F + +F ++
Sbjct: 1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQDRASRPGG 60
Query: 58 GGLEIS 63
G++++
Sbjct: 61 SGVKVA 66
Score = 35.8 bits (83), Expect = 0.020
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQT 408
P H G ++ NV++ E+ ++IEA R+Y N +VF T
Sbjct: 81 PTHPDADA--EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNT 122
>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 131
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAF 43
G+DA S R +S+NIANV+T GYKR + F
Sbjct: 19 GLDASSYRGKVISNNIANVNTKGYKRHYVTF 49
>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 547
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEIST 64
+ TAMSG++A ++ VS+NI+N + GY R + T+ ++ G+ +S
Sbjct: 5 INTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSG 62
>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK.
The flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model.
Length = 322
Score = 37.7 bits (88), Expect = 0.006
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEIST 64
+ A SG+ A +S S+NIAN +T GY R +++ + G+ +++
Sbjct: 1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVPGGGQGGLQIGTGVRVTS 60
Query: 65 KDMISEQGSLM 75
I +Q
Sbjct: 61 IRRIQDQFLDN 71
>gnl|CDD|183629 PRK12622, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 135
Score = 37.2 bits (86), Expect = 0.007
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 14 MDAQSNRVSAVSDNIANVDTVGYKRTAIAFSS 45
+D S R S ++DNIANVDT +KR+ + F S
Sbjct: 15 LDVLSLRQSVIADNIANVDTPNFKRSKVTFES 46
>gnl|CDD|139117 PRK12643, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 209
Score = 37.1 bits (85), Expect = 0.007
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 6 SMKTAMSGMDAQSNRVSAVS-DNIANVDTVGYKRTAIAFSSLVF--PSTSNSYVSGGLEI 62
++ TAM G QS + AV+ +N+AN T G++ A ++ PS + + +
Sbjct: 4 AIYTAM-GAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTM---VTT 59
Query: 63 STKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGG 122
ST + QG++ + D+A+Q G+ V+ D TR G+ I+ G +
Sbjct: 60 STPGVDISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM------ 113
Query: 123 VLLGYPLKNASAPLIV 138
+ GYPL + P+ V
Sbjct: 114 TVQGYPLMGDNGPIDV 129
>gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK;
Provisional.
Length = 649
Score = 37.0 bits (85), Expect = 0.008
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEIST 64
+ A SG++A + +NIAN T GY R +I F+ + + SY+ G+ +S+
Sbjct: 4 LNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61
>gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 613
Score = 37.0 bits (86), Expect = 0.010
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60
MGI S+ T +G+ A V +NI+N + Y R + S+ +T V G
Sbjct: 2 MGIFSSLNTGYTGLQAAQVMVDTTGNNISNASSEFYTRQRVVQSAQAALNTGGGNVGTGT 61
Query: 61 EIST 64
+I T
Sbjct: 62 DIET 65
Score = 31.6 bits (72), Expect = 0.36
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 383 VDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
V EL LI+ Q +Y +K+ T +D L+ +K
Sbjct: 575 VSTDEELVNLIKFQSSYGAAAKIITTIDQMLDTLLGIK 612
>gnl|CDD|183697 PRK12714, flgK, flagellar hook-associated protein FlgK;
Provisional.
Length = 624
Score = 35.7 bits (82), Expect = 0.020
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKD 66
M T S + A +S VS N+AN++T GY R + F++ ++V G +I+
Sbjct: 4 MSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVG 63
Query: 67 MISEQ 71
+++Q
Sbjct: 64 RVADQ 68
>gnl|CDD|139107 PRK12624, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 143
Score = 34.7 bits (79), Expect = 0.047
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTK 65
GM+ + +SDNIAN D +KR+ + F S++ + + + E+ T+
Sbjct: 17 GMNNSIQKRKVISDNIANADVPHFKRSEVIFESMIKRAIESEKIEKEKEVPTQ 69
>gnl|CDD|171613 PRK12621, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 136
Score = 34.3 bits (79), Expect = 0.056
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 14 MDAQSNRVSAVSDNIANVDTVGYKRTAIAF 43
MD Q R + V N+ANV+T GYK + F
Sbjct: 16 MDMQLQRQNVVMSNLANVNTPGYKPRELEF 45
>gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 137
Score = 33.7 bits (78), Expect = 0.095
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 13 GMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLE--------IST 64
++ ++ R ++ NIAN DT GYK I F S++ GLE I
Sbjct: 15 ALNLRAQRQEVIASNIANADTPGYKARDIDFESVLAVMIFGRQSGSGLELARTSERHIPA 74
Query: 65 KDMISEQGSLM----HTASN 80
+ S + L+ H SN
Sbjct: 75 QATTSPKAELLYRDPHQPSN 94
>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 676
Score = 33.2 bits (76), Expect = 0.12
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 11 MSGMDAQSNRVSAVSDNIANVDTVGYKR 38
+SG+ A ++ +NIANVDT GY R
Sbjct: 8 LSGLGASQTALAVTGNNIANVDTAGYSR 35
>gnl|CDD|183636 PRK12631, flgC, flagellar basal body rod protein FlgC;
Provisional.
Length = 138
Score = 32.2 bits (73), Expect = 0.25
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTV 34
M + A SGM AQS R++ + NIAN D+V
Sbjct: 1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSV 34
>gnl|CDD|183632 PRK12626, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 162
Score = 31.4 bits (71), Expect = 0.43
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 MDAQSNRVSAVSDNIANVDTVGYKRTAIAFSS 45
+D ++ R +S NIAN DT GY+ + F+S
Sbjct: 16 LDVRAYRQELLSSNIANADTPGYRARDVDFAS 47
>gnl|CDD|180697 PRK06797, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 135
Score = 31.1 bits (70), Expect = 0.50
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 24 VSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD- 82
VS NIAN +T GYK + F+ + S++ Y S ++ + + + + NT
Sbjct: 22 VSSNIANANTPGYKAQDVTFAEQMNKSSA-LYKSNAADLKSNPDLYQTNEMHLPTVNTKN 80
Query: 83 --LAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113
IQ K K ++V+ T D N+
Sbjct: 81 TYAKIQTKSMQTNKDGNSVDVTTEMLDLMKANQ 113
>gnl|CDD|183631 PRK12625, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 132
Score = 30.2 bits (68), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 17 QSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKD 66
++ R +S NIAN DT YK + FS+ + + S GLE++ D
Sbjct: 19 RAQRAEVISSNIANADTPHYKARDVDFSAAMQAARSQ---QQGLEMTGSD 65
>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 651
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 383 VDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419
V++ E L+ Q+ Y N+KV QT S D L+ +
Sbjct: 614 VNLDEEAANLLRYQQAYQANAKVIQTASTLFDTLLGI 650
Score = 27.7 bits (62), Expect = 5.5
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEIST 64
+ +SG++A ++ NI+N T GY R + + T + Y+ G+ + T
Sbjct: 5 LNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQYTGSGYLGQGVNVVT 62
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 29.6 bits (67), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 118 NVAGGVLLGYPLKNASAPLIVNSFQGLERI 147
NV G L G P++ + V+S+ GL+ I
Sbjct: 193 NVEAGRLFGIPVRGTHSHAFVSSYMGLDEI 222
>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 507
Score = 29.6 bits (67), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 9 TAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSS 45
TA G+ AQ + NIAN +T GY R + ++
Sbjct: 10 TARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAA 46
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 29.2 bits (65), Expect = 2.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 107 DFHINNEGFLENVAGG-VLLGYPLKNASAPLIVNSFQGLERINVK 150
I+NE F NV GG V +G+P+ N+ + +IV L+ ++K
Sbjct: 324 QLKIDNERF--NVNGGAVAIGHPIGNSGSRIIVTLINALKTRHMK 366
>gnl|CDD|183635 PRK12630, flgC, flagellar basal body rod protein FlgC;
Provisional.
Length = 143
Score = 29.0 bits (65), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDT 33
M +M+ + SG+ A+ R+ ++ NIAN T
Sbjct: 1 MKAFDTMRISASGLSAERLRMDTIASNIANATT 33
>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 431
Score = 28.7 bits (64), Expect = 2.6
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 368 NQHGEIFSGALETA----NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419
H ++ G + V++ E+ L+ Q+ + NSK T ++ D L S+
Sbjct: 375 KIHTDLLEGIQQEKMSLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSI 430
Score = 27.5 bits (61), Expect = 6.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSL 46
L T +SGM A + N++N+ T GY R + + S+
Sbjct: 3 LSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSV 45
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase. In some
systems, close homologs lacking enzymatic activity exist
and perform regulatory functions. The model is
designated subfamily rather than equivalog for this
reason.
Length = 308
Score = 28.4 bits (64), Expect = 3.7
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 148 NVKHAELSAMPTTTGFISNNLDKNATIITPDK 179
+V L A P ++ + N +++PD
Sbjct: 137 DVPVDNLYASPVLAEYLKKKILDNPVVVSPDA 168
>gnl|CDD|185218 PRK15318, PRK15318, intimin-like protein SinH; Provisional.
Length = 730
Score = 28.4 bits (63), Expect = 3.7
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 198 AYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFP------YNVAPLNTVEVSFDP 251
AY LG +VY+ YY EV++F D + Y PL TV +
Sbjct: 240 AYPQLGGKLVYEQYYGD------EVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKA 293
Query: 252 VTG 254
TG
Sbjct: 294 GTG 296
>gnl|CDD|183634 PRK12629, flgC, flagellar basal body rod protein FlgC;
Provisional.
Length = 135
Score = 28.1 bits (62), Expect = 4.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTV 34
M L A S + AQS R+S ++ N+AN D+V
Sbjct: 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSV 34
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 27.8 bits (62), Expect = 5.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELS 155
G + +G+PL + A L + + + L+R ++A +S
Sbjct: 350 GAIAVGHPLGASGARLALTAARELQRRGKRYAVVS 384
>gnl|CDD|180702 PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 141
Score = 27.1 bits (60), Expect = 8.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 10 AMSGMDAQSNRVSAVSDNIANVDTV 34
A S M AQ+ R++ V+ N+AN ++
Sbjct: 10 AGSAMTAQTIRLNTVASNLANAESP 34
>gnl|CDD|180384 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional.
Length = 189
Score = 27.2 bits (61), Expect = 8.6
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 307 KDFSVSKDGYVDIIYDDGTRVPIY 330
KDF ++ GYV++ YDD + +Y
Sbjct: 145 KDFPLT--GYVEVRYDDEQKRVVY 166
>gnl|CDD|179172 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 27.2 bits (61), Expect = 9.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 144 LERINVKHAELSAMPTTTGFISNNLDKNATIITPDK 179
LE + L A P +I + LD + ++ PDK
Sbjct: 129 LEFFPIPFINLDAAPLIAEYIGDKLD-DPLVLAPDK 163
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,573,492
Number of extensions: 415192
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 103
Length of query: 421
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 325
Effective length of database: 3,920,105
Effective search space: 1274034125
Effective search space used: 1274034125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)