RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE
[Candidatus Liberibacter asiaticus str. psy62]
(421 letters)
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
universal joint, bacterial flagellum, motor protein;
7.10A {Salmonella enterica subsp} (A:133-285)
Length = 153
Score = 90.3 bits (224), Expect = 4e-19
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 9/158 (5%)
Query: 147 INVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSV 206
I + + ++A TTT + NL+ + + TP Y K + YD+ G++
Sbjct: 4 ITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQGNAH 61
Query: 207 VYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISF 266
+VY+ KT D +W V + + + F+ G L + I+
Sbjct: 62 DMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVNITT 115
Query: 267 NDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAP 303
++ Q G + NG+ P
Sbjct: 116 GTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKP 153
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural
protein; 1.80A {Salmonella typhimurium} (A:62-218)
Length = 157
Score = 89.2 bits (221), Expect = 9e-19
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Query: 144 LERINVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLG 203
I + + ++A TTT + NL+ + + TP Y K + YD+ G
Sbjct: 2 PAPITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQG 59
Query: 204 SSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKA 263
++ +VY+ KT D +W V + + + F+ G L +
Sbjct: 60 NAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVN 113
Query: 264 ISFNDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAPG 304
I+ ++ Q G + NG+ PG
Sbjct: 114 ITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPG 155
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
universal joint, bacterial flagellum, motor protein;
7.10A {Salmonella enterica subsp} (A:48-116,A:315-358)
Length = 113
Score = 65.5 bits (160), Expect = 1e-11
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 59 GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLEN 118
G++++ G+ +T D+AI GFF + + +R G F ++ L N
Sbjct: 3 GVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVN 62
Query: 119 VAGGVLL 125
+ G L
Sbjct: 63 MQGMQLT 69
Score = 48.9 bits (117), Expect = 1e-06
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGH 367
F + ++ ++ G ++ +A + + L N + T+ SG +G G
Sbjct: 51 QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAGS 104
Query: 368 NQHGEIFSG 376
G++ +G
Sbjct: 105 GNFGKLTNG 113
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural
protein; 1.80A {Salmonella typhimurium}
(A:1-46,A:245-281)
Length = 83
Score = 57.3 bits (139), Expect = 4e-09
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS 140
D+AI GFF + + +R G F ++ L N+ G L L N +
Sbjct: 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTV--LANFANN----- 54
Query: 141 FQGLERI 147
+GL
Sbjct: 55 -EGLASQ 60
Score = 31.5 bits (72), Expect = 0.19
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPG 366
F + ++ ++ G ++ +A + + L N + T+ SG +G G
Sbjct: 28 QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAG 80
>2obn_A Hypothetical protein; protein of unknown function DUF1611,
structural genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis
atcc 29413} (A:143-349)
Length = 207
Score = 30.0 bits (68), Expect = 0.51
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 41 IAFSSLVFPSTSNSYVSGGLEISTKD--------MISEQGSLMHTASNTDLAI 85
+ + + + +G +E I QGSL+H S L +
Sbjct: 54 LEGDGVALDAVRVDFAAGAVEQXVXRYGKNYDILHIEGQGSLLHPGSTATLPL 106
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle,
alternative splicing, coiled coil, SH3 domain,
endocytosis, structural genomics, NPPSFA; 2.49A {Homo
sapiens} (A:)
Length = 240
Score = 29.3 bits (65), Expect = 1.0
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 378 LETANVDIASELTELIEAQRNY-AVNSKVFQTGSDFMDILIS 418
+V+ S+L IEA +Y ++++ Q + IS
Sbjct: 188 FLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQXRIS 229
>2iqh_A Nucleocapsid protein; oligomerization, RNA binding, NLS,
polymerase binding, viral protein; 3.20A {Influenza a
virus} (A:143-268,A:378-499)
Length = 248
Score = 28.5 bits (63), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 57 SGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115
+G E T DM +E LM +A D++ QG+G F + + + + F ++NEG
Sbjct: 172 TGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPS--FDMSNEGS 228
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and
cellulose-binding domain; glycosyl hydrolase, cellulose
degradation; 1.90A {Thermobifida fusca} (A:453-605)
Length = 153
Score = 27.9 bits (62), Expect = 2.5
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 204 SSVVYDVYYTKTGDKKWEVSIFR--QDQSTNNSFPYNVAPLNT-VEVSFDPVTGYLANSS 260
+ ++T +Q ++V+ VE+ + S
Sbjct: 43 DKGTFRYWFTLDEGVDPADITVSSAYNQCATPEDVHHVSGDLYYVEIDCTGEKIFPGGQS 102
Query: 261 HKAI 264
Sbjct: 103 EHRR 106
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,910,434
Number of extensions: 125064
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 16
Length of query: 421
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 330
Effective length of database: 1,879,794
Effective search space: 620332020
Effective search space used: 620332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)