BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE
[Candidatus Liberibacter asiaticus str. psy62]
(421 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
psy62]
Length = 421
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/421 (100%), Positives = 421/421 (100%)
Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60
MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL
Sbjct: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60
Query: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120
EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA
Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120
Query: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180
GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT
Sbjct: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180
Query: 181 PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240
PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA
Sbjct: 181 PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240
Query: 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING 300
PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING
Sbjct: 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING 300
Query: 301 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI 360
HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI
Sbjct: 301 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI 360
Query: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK
Sbjct: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420
Query: 421 R 421
R
Sbjct: 421 R 421
>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
asiaticus str. psy62]
Length = 262
Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%)
Query: 10 AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55
A +GM AQ + +++NIAN++T GYKR F+ ++ PS S
Sbjct: 7 AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66
Query: 56 --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113
+ G++IS+ + QG ++HT +N DLA+ G+G+F V+ D TRAG F+I+++
Sbjct: 67 ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126
Query: 114 GFLENVAGGVLL 125
G L G L+
Sbjct: 127 GQLVTADGNTLV 138
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321
+A SFN ++ G Q +T D T + G IP+++ ++ VS+ G + +
Sbjct: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162
Query: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380
+ P+ +L IA +E L+ N T SGD I P + G LE
Sbjct: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222
Query: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
+NVD E++E+I AQR Y +NSKV + +D M LI+ R
Sbjct: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262
>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN-----SYVSGGL 60
S ++ A R+S V+DN++N DTVG++ + FS +V ++ S+V+ G
Sbjct: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63
Query: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120
E +K E GS + T + D A++G +F ++ + LTR G F + ++G L + +
Sbjct: 64 EYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118
Query: 121 GGVLLGYP-LKNASAPL 136
G YP L AS P+
Sbjct: 119 G----KYPVLDMASVPI 131
>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
asiaticus str. psy62]
Length = 134
Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG-------YKRTAIAFSSLVFPSTSNSY 55
++ S A SG+ QS R+ +S+NIAN T G Y+R I+F ++ +
Sbjct: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------H 56
Query: 56 VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115
SGG+ + K + +Q + + G IVK NVN L D N +
Sbjct: 57 GSGGVRV--KKIGVDQSTFVEEFDPGHPVANASG--IVK-YPNVNVLVETADMRETNRLY 111
Query: 116 LENV 119
+ N+
Sbjct: 112 MANL 115
Score = 26.6 bits (57), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421
PGH SG ++ NV++ E ++ E R Y N + + D M + L R
Sbjct: 79 PGHPVANA--SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 469
Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 221 EVSIFRQDQSTNNSFPYNVAPLNTVEV--SFDPVTGYLANS-SHKAISFNDNTSGIDQQI 277
+S+ +Q Q T + + +N + V SFD + N S + N SGI+
Sbjct: 168 RISVVQQKQMTTS----EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN--- 220
Query: 278 TIDISK-TTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR---VPIYRLA 333
+I+ ++ Q+ F+ S I +P + FSV + DI + +PI +L
Sbjct: 221 SINWARIMAQIVYYFV---SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277
Query: 334 IATVPSEDNLKLFDGNTYLP 353
IAT ++ +++FD Y P
Sbjct: 278 IATNENDTLVRMFDMGMYRP 297
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 158 PTTTGFISNNLDKNATIITPDKT 180
PTT F+ N D N I+ D+T
Sbjct: 149 PTTLEFLLKNWDHNCQIVFADET 171
>gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
str. psy62]
Length = 202
Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 304 GKP--KDFSVSKDGYVDIIYDDGTRVPIYR 331
G P KDF V+ G+V++ YDD + +YR
Sbjct: 141 GHPLRKDFPVT--GFVELHYDDKVKKVVYR 168
>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 594
Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 14 MDAQSNRVSAVSDNIANVDTVGYKRTAI 41
M Q + S +SD+ +N+ T G++ A+
Sbjct: 70 MAVQRHCTSKISDDFSNIHTFGFRGEAL 97
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,709
Number of Sequences: 1233
Number of extensions: 11766
Number of successful extensions: 34
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 13
length of query: 421
length of database: 328,796
effective HSP length: 76
effective length of query: 345
effective length of database: 235,088
effective search space: 81105360
effective search space used: 81105360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 39 (19.6 bits)