BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] (421 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/421 (100%), Positives = 421/421 (100%) Query: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL Sbjct: 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60 Query: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 Query: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT Sbjct: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180 Query: 181 PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240 PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA Sbjct: 181 PKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240 Query: 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING 300 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING Sbjct: 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEING 300 Query: 301 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI 360 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI Sbjct: 301 HAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDI 360 Query: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK Sbjct: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%) Query: 10 AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55 A +GM AQ + +++NIAN++T GYKR F+ ++ PS S Sbjct: 7 AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66 Query: 56 --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113 + G++IS+ + QG ++HT +N DLA+ G+G+F V+ D TRAG F+I+++ Sbjct: 67 ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126 Query: 114 GFLENVAGGVLL 125 G L G L+ Sbjct: 127 GQLVTADGNTLV 138 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321 +A SFN ++ G Q +T D T + G IP+++ ++ VS+ G + + Sbjct: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162 Query: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380 + P+ +L IA +E L+ N T SGD I P + G LE Sbjct: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222 Query: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 +NVD E++E+I AQR Y +NSKV + +D M LI+ R Sbjct: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262 >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 15/137 (10%) Query: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN-----SYVSGGL 60 S ++ A R+S V+DN++N DTVG++ + FS +V ++ S+V+ G Sbjct: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 Query: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 E +K E GS + T + D A++G +F ++ + LTR G F + ++G L + + Sbjct: 64 EYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 Query: 121 GGVLLGYP-LKNASAPL 136 G YP L AS P+ Sbjct: 119 G----KYPVLDMASVPI 131 >gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%) Query: 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG-------YKRTAIAFSSLVFPSTSNSY 55 ++ S A SG+ QS R+ +S+NIAN T G Y+R I+F ++ + Sbjct: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------H 56 Query: 56 VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115 SGG+ + K + +Q + + G IVK NVN L D N + Sbjct: 57 GSGGVRV--KKIGVDQSTFVEEFDPGHPVANASG--IVK-YPNVNVLVETADMRETNRLY 111 Query: 116 LENV 119 + N+ Sbjct: 112 MANL 115 Score = 26.6 bits (57), Expect = 0.80, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 PGH SG ++ NV++ E ++ E R Y N + + D M + L R Sbjct: 79 PGHPVANA--SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 >gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%) Query: 221 EVSIFRQDQSTNNSFPYNVAPLNTVEV--SFDPVTGYLANS-SHKAISFNDNTSGIDQQI 277 +S+ +Q Q T + + +N + V SFD + N S + N SGI+ Sbjct: 168 RISVVQQKQMTTS----EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN--- 220 Query: 278 TIDISK-TTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR---VPIYRLA 333 +I+ ++ Q+ F+ S I +P + FSV + DI + +PI +L Sbjct: 221 SINWARIMAQIVYYFV---SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277 Query: 334 IATVPSEDNLKLFDGNTYLP 353 IAT ++ +++FD Y P Sbjct: 278 IATNENDTLVRMFDMGMYRP 297 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 158 PTTTGFISNNLDKNATIITPDKT 180 PTT F+ N D N I+ D+T Sbjct: 149 PTTLEFLLKNWDHNCQIVFADET 171 >gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 202 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%) Query: 304 GKP--KDFSVSKDGYVDIIYDDGTRVPIYR 331 G P KDF V+ G+V++ YDD + +YR Sbjct: 141 GHPLRKDFPVT--GFVELHYDDKVKKVVYR 168 >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 17/28 (60%) Query: 14 MDAQSNRVSAVSDNIANVDTVGYKRTAI 41 M Q + S +SD+ +N+ T G++ A+ Sbjct: 70 MAVQRHCTSKISDDFSNIHTFGFRGEAL 97 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.131 0.371 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,709 Number of Sequences: 1233 Number of extensions: 11766 Number of successful extensions: 34 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 13 length of query: 421 length of database: 328,796 effective HSP length: 76 effective length of query: 345 effective length of database: 235,088 effective search space: 81105360 effective search space used: 81105360 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 39 (19.6 bits)