HHsearch alignment for GI: 254780526 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].

Probab=98.76  E-value=4e-09  Score=77.97  Aligned_cols=94  Identities=14%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             98899982858999999828996799990078966217999863101332100002443210000111222010001023
Q gi|254780526|r   23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        23 g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
T Consensus        12 ~~~v~~a~~g~~~l~~~~~~~~~~~lld~~m--~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~   88 (435)
T COG3706          12 YKEVATAKKGLIALAILLDHKPDYKLLDVMM--PGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP   88 (435)
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf             5546342542779999744898748741006--886730199876358751-6998603787775567763134413677


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             33332100000111222
Q gi|254780526|r  103 IHHREILARVAAIYRRL  119 (223)
Q Consensus       103 ~~~~eL~ari~a~lRr~  119 (223)
T Consensus        89 ~~~~~~~~r~~~l~~~k  105 (435)
T COG3706          89 VNDSQLFLRAKSLVRLK  105 (435)
T ss_pred             CCHHHHHHHHHHHCCCH
T ss_conf             77177887526631444