HHsearch alignment for GI: 254780526 and conserved domain: COG4567
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].
Probab=99.60 E-value=1.7e-15 Score=118.02 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=125.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223)
T Consensus 12 lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~~d~rivvLTG 89 (182)
T COG4567 12 LLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERRADMRIVVLTG 89 (182)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEE--CCCCCHHHHHHHHHCCCCCEEEEEEC
T ss_conf 5896187699999999986068625761449999999851798528898640--68874689999982497643898845
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223)
T Consensus 90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~---aAl~~~~~d~~~~~~~~pmS~~rl~----------------WE----- 145 (182)
T COG4567 90 YASIATAVEAVKLGACDYLAKPADADDIL---AALLRREPDEDTAPPENPMSADRLR----------------WE----- 145 (182)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCCCCCCCCCCCCCHHHHH----------------HH-----
T ss_conf 11799999999862455407977768999---9986027875457999997456766----------------99-----
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf 11288340089999865287657776--613688999999860145
Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNK 204 (223)
Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~--~~tv~~~I~rLRkKL~~~ 204 (223)
T Consensus 146 -----------hI-qrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR 179 (182)
T COG4567 146 -----------HI-QRVLEECEGNISETARRLNMHRRTLQRKLAKR 179 (182)
T ss_pred -----------HH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----------99-99999937777899999621399999997414