HHsearch alignment for GI: 254780526 and conserved domain: COG4567

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].
Probab=99.60  E-value=1.7e-15  Score=118.02  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=125.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
T Consensus        12 lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~~d~rivvLTG   89 (182)
T COG4567          12 LLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERRADMRIVVLTG   89 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEE--CCCCCHHHHHHHHHCCCCCEEEEEEC
T ss_conf             5896187699999999986068625761449999999851798528898640--68874689999982497643898845


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL  160 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L  160 (223)
T Consensus        90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~---aAl~~~~~d~~~~~~~~pmS~~rl~----------------WE-----  145 (182)
T COG4567          90 YASIATAVEAVKLGACDYLAKPADADDIL---AALLRREPDEDTAPPENPMSADRLR----------------WE-----  145 (182)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCCCCCCCCCCCCCHHHHH----------------HH-----
T ss_conf             11799999999862455407977768999---9986027875457999997456766----------------99-----


Q ss_pred             HCCCCCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf             11288340089999865287657776--613688999999860145
Q gi|254780526|r  161 MANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNK  204 (223)
Q Consensus       161 ~~~~g~~vsr~~l~~~iwg~~~~~~~--~~tv~~~I~rLRkKL~~~  204 (223)
T Consensus       146 -----------hI-qrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR  179 (182)
T COG4567         146 -----------HI-QRVLEECEGNISETARRLNMHRRTLQRKLAKR  179 (182)
T ss_pred             -----------HH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -----------99-99999937777899999621399999997414