HHsearch alignment for GI: 254780526 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.98 E-value=3.6e-33 Score=229.37 Aligned_cols=195 Identities=17% Similarity=0.249 Sum_probs=159.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223)
T Consensus 6 IliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~--mP~~~G~e~l~~l~~~~p~~~vivlT~ 83 (202)
T PRK09390 6 VHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVR--MPGIDGIELLRRLKARGSPLPVIVMTG 83 (202)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCC--CCCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999849999999999999988998999899999999976579799987799--999896079999872289986799974
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223)
T Consensus 84 ~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~---~-------~~~~~~~~~~LT~RE~eVL~ll 153 (202)
T PRK09390 84 HGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEA---V-------AADIRARIASLSERERQVMDGL 153 (202)
T ss_pred CCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH---H-------HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 57488889999829464455999999999999999971523242146---6-------7888740066998999999999
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCE
Q ss_conf 1128834008999986528765777661368899999986014567771577868630
Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 (223)
Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY 218 (223)
T Consensus 154 ~~--G--~snkeIA~~L------~iS~~TV~~h~~~I~~KL~v~~~~elv~~A~~~Gl 201 (202)
T PRK09390 154 VA--G--LSNKVIARDL------DISPRTVEVYRANVMTKMQAGSLSELVRMALRAGA 201 (202)
T ss_pred HC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 83--8--9689999997------98788999999999999688988999999998599