HHsearch alignment for GI: 254780526 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.84 E-value=7.1e-21 Score=151.98 Aligned_cols=188 Identities=13% Similarity=0.176 Sum_probs=140.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHH-HHC-CCCCCEECC
Q ss_conf 6897098999999999999789889-9982858999999828996799990078966217999863-101-332100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI-IRA-HSQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~-lr~-~~~~pII~l 78 (223)
T Consensus 13 vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~--~~al~~~~~pdViLmDi--~mp~~~gi~~~~e~i~~~~p~~kVliL 87 (216)
T PRK10100 13 LLLITKPSLQATALLQHLKQS-LAITGKLHNI--QRSLDDISSGSIILLDM--MEADKKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred EEEECCCHHHHHHHHHHHHHH-HHHHHEECCH--HHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999558429999999988987-6476302477--66776447999899848--878830899999999725999779999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
T Consensus 88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~-~l~~~~~~~~-~~~~~~~~LT~RE~eIL~ 165 (216)
T PRK10100 88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLAS-YLITHSGNYR-YNSTESALLTHREKEILN 165 (216)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHCCCC-CCCCCCCCCCHHHHHHHH
T ss_conf 68874899999976587667668999999999999998799723999999-9997102256-788777899989999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 321128834008999986528765777661368899999986014567
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223)
T Consensus 166 lla~--G--~sNkEIA~~L------~iSe~TVk~H~~~I~~KL~v~~R 203 (216)
T PRK10100 166 KLRI--G--ASNNEIARSL------FISENTVKTHLYNLFKKIAVKNR 203 (216)
T ss_pred HHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 9987--9--9999999894------98898999999999998099999