HHsearch alignment for GI: 254780526 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.84  E-value=7.1e-21  Score=151.98  Aligned_cols=188  Identities=13%  Similarity=0.176  Sum_probs=140.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHH-HHC-CCCCCEECC
Q ss_conf             6897098999999999999789889-9982858999999828996799990078966217999863-101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI-IRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~-lr~-~~~~pII~l   78 (223)
T Consensus        13 vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~--~~al~~~~~pdViLmDi--~mp~~~gi~~~~e~i~~~~p~~kVliL   87 (216)
T PRK10100         13 LLLITKPSLQATALLQHLKQS-LAITGKLHNI--QRSLDDISSGSIILLDM--MEADKKLIHYWQDTLSRKNNNIKILLL   87 (216)
T ss_pred             EEEECCCHHHHHHHHHHHHHH-HHHHHEECCH--HHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             999558429999999988987-6476302477--66776447999899848--878830899999999725999779999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE  158 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~  158 (223)
T Consensus        88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~-~l~~~~~~~~-~~~~~~~~LT~RE~eIL~  165 (216)
T PRK10100         88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLAS-YLITHSGNYR-YNSTESALLTHREKEILN  165 (216)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHCCCC-CCCCCCCCCCHHHHHHHH
T ss_conf             68874899999976587667668999999999999998799723999999-9997102256-788777899989999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             321128834008999986528765777661368899999986014567
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
T Consensus       166 lla~--G--~sNkEIA~~L------~iSe~TVk~H~~~I~~KL~v~~R  203 (216)
T PRK10100        166 KLRI--G--ASNNEIARSL------FISENTVKTHLYNLFKKIAVKNR  203 (216)
T ss_pred             HHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             9987--9--9999999894------98898999999999998099999