HHsearch alignment for GI: 254780526 and conserved domain: PRK10161
>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=100.00 E-value=0 Score=393.99 Aligned_cols=218 Identities=18% Similarity=0.311 Sum_probs=203.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223)
T Consensus 5 ILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~l--P~~dG~~~~~~ir~~~~~~~~PII~l 82 (229)
T PRK10161 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESMTRDIPVVML 82 (229)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999599999999999999779999998999999999852899899997899--88763358788775024689758999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 44321000011122201000102333332100000111222222--2112222222222222222222332124210123
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l 156 (223)
T Consensus 83 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~L 162 (229)
T PRK10161 83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKL 162 (229)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHH
T ss_conf 55666577999987698765208999899999999997123777765432677789861015999999998706899999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 443211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 163 L~~L~~~~g~vvsr~~L~~~vwg~-~~~~~~rtldv~I~rLRkKl~~~~~~~~I~TvrG~GYr~~~ 227 (229)
T PRK10161 163 LHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 (229)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECC
T ss_conf 999997799879799999986399-98988473999999999974567999819986584740571