HHsearch alignment for GI: 254780526 and conserved domain: PRK10360

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.92  E-value=1.9e-25  Score=180.70  Aligned_cols=185  Identities=21%  Similarity=0.205  Sum_probs=149.1

Q ss_pred             EEEECCCHHHHHHHHHHHHH-CCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC
Q ss_conf             68970989999999999997-8988-999828589999998289967999900789662179998631013321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGD-DGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~-~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt   79 (223)
T Consensus         4 I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~m--p~~~g~~~~~~l~~--~~~vivls   79 (196)
T PRK10360          4 VALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISM--PDISGLELLSQLPK--GMATIMLS   79 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHC--CCCEEEEE
T ss_conf             999879799999999998129995999998999999998874499999987887--88620779999843--87489997


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             43210000111222010001023333321000001112222222112222222222222222222332124210123443
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY  159 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~  159 (223)
T Consensus        80 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~~~~~~~~~-----------~~l~~~~~~~LT~RE~eVL~l  148 (196)
T PRK10360         80 VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIA-----------IKLASGRQDPLTKRERQVAEK  148 (196)
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH-----------HHHHCCCCCCCCHHHHHHHHH
T ss_conf             307599999999759988997789999999999999869956799999-----------998716768999799999999


Q ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             2112883400899998652876577766136889999998601456777157
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD  211 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~  211 (223)
T Consensus       149 ia~--G--~snkeIA~~L------~IS~~TVk~h~~~i~~KL~v~~r~el~r  190 (196)
T PRK10360        149 LAQ--G--MAVKEIAAEL------GLSPKTVHVHRANLMEKLGVSNDVELAR  190 (196)
T ss_pred             HHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             987--9--9999999996------9999999999999999819999999999