HHsearch alignment for GI: 254780526 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.92 E-value=1.9e-25 Score=180.70 Aligned_cols=185 Identities=21% Similarity=0.205 Sum_probs=149.1
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC
Q ss_conf 68970989999999999997-8988-999828589999998289967999900789662179998631013321000024
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGD-DGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~-~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt 79 (223)
T Consensus 4 I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~m--p~~~g~~~~~~l~~--~~~vivls 79 (196)
T PRK10360 4 VALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISM--PDISGLELLSQLPK--GMATIMLS 79 (196)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHC--CCCEEEEE
T ss_conf 999879799999999998129995999998999999998874499999987887--88620779999843--87489997
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 43210000111222010001023333321000001112222222112222222222222222222332124210123443
Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223)
Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223)
T Consensus 80 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~~~~~~~~~-----------~~l~~~~~~~LT~RE~eVL~l 148 (196)
T PRK10360 80 VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIA-----------IKLASGRQDPLTKRERQVAEK 148 (196)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH-----------HHHHCCCCCCCCHHHHHHHHH
T ss_conf 307599999999759988997789999999999999869956799999-----------998716768999799999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 2112883400899998652876577766136889999998601456777157
Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 (223)
Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~ 211 (223)
T Consensus 149 ia~--G--~snkeIA~~L------~IS~~TVk~h~~~i~~KL~v~~r~el~r 190 (196)
T PRK10360 149 LAQ--G--MAVKEIAAEL------GLSPKTVHVHRANLMEKLGVSNDVELAR 190 (196)
T ss_pred HHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 987--9--9999999996------9999999999999999819999999999