HHsearch alignment for GI: 254780526 and conserved domain: PRK10529
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional.
Probab=100.00 E-value=0 Score=385.11 Aligned_cols=217 Identities=20% Similarity=0.274 Sum_probs=201.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223)
T Consensus 4 ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~l--P~~dG~~l~~~iR~~~~~pII~lta~ 81 (225)
T PRK10529 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL--PDGDGIEFIRDLRQWSAIPVIVLSAR 81 (225)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCEEEEECCCCCCEEEEECC
T ss_conf 9999798999999999999889999997999999998611799899980788--88887633100012799878999546
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 21000011122201000102333332100000111222222---211222222222222222222233212421012344
Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~---~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
T Consensus 82 ~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~i~LT~~E~~lL~ 161 (225)
T PRK10529 82 SEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLA 161 (225)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 89899999997698765407854599999999997140378887864999999999033999999961313668999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEEC
Q ss_conf 32112883400899998652876577766136889999998601456-7771577868630313
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~ 221 (223)
T Consensus 162 ~L~~~~g~vvsre~L~~~vw~~-~~~~~~~~idv~I~rLRkKl~~~~~~~~~I~TvrG~GYr~~ 224 (225)
T PRK10529 162 VLLNNAGKVLTQRQLLNQVWGP-NAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRFM 224 (225)
T ss_pred HHHHCCCCEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEC
T ss_conf 9997799619699999996499-98988687999999999972007899982895678165665