HHsearch alignment for GI: 254780526 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=100.00  E-value=0  Score=381.89  Aligned_cols=217  Identities=22%  Similarity=0.293  Sum_probs=197.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
T Consensus         4 ILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~L--P~~dG~~l~~~iR~~~~~PII~lta~   80 (232)
T PRK10955          4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMM--PKKNGIDTLKALRQTHQTPVIMLTAR   80 (232)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCC--CCCCCCCCCCEEECCCCCCEEEEECC
T ss_conf             999969899999999999888999999899999999964-898999991899--98886723012440788878998055


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21000011122201000102333332100000111222222---------211222222222222222222233212421
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRR  152 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~  152 (223)
T Consensus        81 ~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~  160 (232)
T PRK10955         81 GSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT  160 (232)
T ss_pred             CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf             67688999997697576338999899999999997615431001235678856998989998787799999999966899


Q ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC
Q ss_conf             01234432112883400899998652876577766136889999998601456-77715778686303138
Q gi|254780526|r  153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       153 E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~  222 (223)
T Consensus       161 E~~lL~~L~~~~g~vvsre~L~~~vwg~-~~~~~~rtidv~I~rLRkKL~~~~~~~~~I~TvrG~GY~lvs  230 (232)
T PRK10955        161 EFTLLYLLAQHLGQVVSREHLSQEVLGK-RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS  230 (232)
T ss_pred             HHHHHHHHHHCCCCEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEE
T ss_conf             9999999997899509799999997188-988885829999999999541168999819984570659986