HHsearch alignment for GI: 254780526 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=100.00 E-value=0 Score=381.89 Aligned_cols=217 Identities=22% Similarity=0.293 Sum_probs=197.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223)
T Consensus 4 ILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~L--P~~dG~~l~~~iR~~~~~PII~lta~ 80 (232)
T PRK10955 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMM--PKKNGIDTLKALRQTHQTPVIMLTAR 80 (232)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCC--CCCCCCCCCCEEECCCCCCEEEEECC
T ss_conf 999969899999999999888999999899999999964-898999991899--98886723012440788878998055
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000011122201000102333332100000111222222---------211222222222222222222233212421
Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 (223)
Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~ 152 (223)
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~ 160 (232)
T PRK10955 81 GSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT 160 (232)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 67688999997697576338999899999999997615431001235678856998989998787799999999966899
Q ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC
Q ss_conf 01234432112883400899998652876577766136889999998601456-77715778686303138
Q gi|254780526|r 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 153 E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 161 E~~lL~~L~~~~g~vvsre~L~~~vwg~-~~~~~~rtidv~I~rLRkKL~~~~~~~~~I~TvrG~GY~lvs 230 (232)
T PRK10955 161 EFTLLYLLAQHLGQVVSREHLSQEVLGK-RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 (232)
T ss_pred HHHHHHHHHHCCCCEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEE
T ss_conf 9999999997899509799999997188-988885829999999999541168999819984570659986