HHsearch alignment for GI: 254780526 and conserved domain: PRK11466
>PRK11466 hybrid sensory histidine kinase TorS; Provisional.
Probab=99.78 E-value=5.5e-19 Score=140.05 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=100.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH-HCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf 689709899999999999978988999828589999998-28996799990078966217999863101-3321000024
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~-~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223)
T Consensus 684 VLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~--MP~mDG~eatr~iR~~~~~~pIIAlT 761 (912)
T PRK11466 684 LLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFD--LPDYDGITLARQLAQQYPSLVLIGFS 761 (912)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 9999487889999999999869989998999999999971899858987699--99998999999998619999789977
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 43210000111222010001023333321000001112
Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223)
Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223)
T Consensus 762 A~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~ 799 (912)
T PRK11466 762 AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (912)
T ss_pred CCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 98788999999976998775498999999999999846