HHsearch alignment for GI: 254780526 and conserved domain: TIGR03541
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=97.09 E-value=0.00058 Score=45.44 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 3212421012344321128834008999986528765777661368899999986014567
Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223)
Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223)
T Consensus 169 ~~~LT~RE~E~L~w~A~--Gk--t~~eIa~iL------~iSe~TV~~hl~~a~~KLga~nr 219 (232)
T TIGR03541 169 AGVLSEREREVLAWTAL--GR--RQADIAAIL------GISERTVENHLRSARRKLGVATT 219 (232)
T ss_pred CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99989899999999987--99--999999996------98999999999999998489999