HHsearch alignment for GI: 254780526 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.88 E-value=8.8e-23 Score=163.97 Aligned_cols=112 Identities=24% Similarity=0.385 Sum_probs=103.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCCC
Q ss_conf 89709899999999999978988999828589999998289967999900789662179998631013-32100002443
Q gi|254780526|r 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY 81 (223)
Q Consensus 3 LiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~~ 81 (223)
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~--mP~~~G~el~~~ir~~~~~~pvI~lT~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIM--MPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 98927299999999999988999999899999999987579999997799--9898726999999985899959999787
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 21000011122201000102333332100000111
Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223)
Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223)
T Consensus 79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 89999999997689789969899999999999869