HHsearch alignment for GI: 254780526 and conserved domain: cd00156

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.88  E-value=8.8e-23  Score=163.97  Aligned_cols=112  Identities=24%  Similarity=0.385  Sum_probs=103.3

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCCC
Q ss_conf             89709899999999999978988999828589999998289967999900789662179998631013-32100002443
Q gi|254780526|r    3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY   81 (223)
Q Consensus         3 LiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~~   81 (223)
T Consensus         1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~--mP~~~G~el~~~ir~~~~~~pvI~lT~~   78 (113)
T cd00156           1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIM--MPGMDGLELLRRIRKRGPDIPIIFLTAH   78 (113)
T ss_pred             CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             98927299999999999988999999899999999987579999997799--9898726999999985899959999787


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             21000011122201000102333332100000111
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
T Consensus        79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l  113 (113)
T cd00156          79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL  113 (113)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             89999999997689789969899999999999869