HHsearch alignment for GI: 254780526 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.72 E-value=0.0024 Score=41.60 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=45.0
Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEE
Q ss_conf 10123443211288340089999865287657776613688999999860145677715778686303
Q gi|254780526|r 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 (223)
Q Consensus 152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~ 219 (223)
T Consensus 1 R~~~il~~L~~~~~~-vt~~~La~~l------~VSr~TV~rdi~~L~~~G------~~I~s~~g~GY~ 55 (55)
T pfam08279 1 RLLQILELLLQAREP-ISGQELAEKL------GVSRRTIRRDIKALEALG------VPIESEPGRGYR 55 (55)
T ss_pred CHHHHHHHHHHCCCC-CCHHHHHHHH------CCCHHHHHHHHHHHHHCC------CCEEECCCCCCC
T ss_conf 989999999976999-1899999996------988999999999999889------978846899998