HHsearch results for GI: 254780526 and protein with PDBid: 1a04_A

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.96  E-value=8.5e-30  Score=206.78  Aligned_cols=192  Identities=18%  Similarity=0.199  Sum_probs=156.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECC
Q ss_conf             68970989999999999997898--8999828589999998289967999900789662179998631013-32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~l   78 (223)
                      |||||||+.+++++..+|+..+.  .|..+.+++++..+.....||++++|+.+  |+++|+++++.+++. +.+||+++
T Consensus         8 ILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~~~pdlvllD~~l--p~~~G~~~~~~~~~~~~~~~iivl   85 (215)
T 1a04_A            8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM--PGMNGLETLDKLREKSLSGRIVVF   85 (215)
T ss_dssp             EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTS--TTSCHHHHHHHHHHSCCCSEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999929899999999999858992899997999999999974699689996888--998986232101124566554344


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE  158 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~  158 (223)
                      |+.++.++.++++++||+||+.||++..++.++++++.++....+... ...+..+.........+....||+||+++|.
T Consensus        86 t~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LT~rE~~vl~  164 (215)
T 1a04_A           86 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEAL-TPVLAASLRANRATTERDVNQLTPRERDILK  164 (215)
T ss_dssp             ECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTT-HHHHHHHC-------CCCGGGSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             367999999999984998986025999999999999984887568567-6788888762445457870208989999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             321128834008999986528765777661368899999986014567
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      +|+++    .|..+|++.+      .++.+||++|++||++||+...-
T Consensus       165 ll~~g----~sn~~IA~~L------~iS~~TV~~h~~~i~~KL~v~~r  202 (215)
T 1a04_A          165 LIAQG----LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSR  202 (215)
T ss_dssp             HHHTT----CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHH----CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             99986----6312679997------88687999999999998099988