HHsearch results for GI: 254780526 and protein with PDBid: 1yio_A
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.96 E-value=5.4e-31 Score=214.33 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=153.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
|||||||+.+++++...|+..||.|..+.+++++.......+||++++|+. ||+++|+++++.+|+. +++|||++|+
T Consensus 7 ILIVDD~~~~r~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~pDlvllD~~--mp~~~G~~~l~~i~~~~~~~~iI~lt~ 84 (208)
T 1yio_A 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999949999999999999977998999799999999860469998998578--899765799999886056651798725
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223)
+++.+...+++++||+||+.||++.+||.++|++.+++......... ...........||++|.+++.++
T Consensus 85 ~~~~~~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~~~~~~~~----------~~~~~~~~~~~Lt~re~evl~ll 154 (208)
T 1yio_A 85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARE----------TQDQLEQLFSSLTGREQQVLQLT 154 (208)
T ss_dssp CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 79999999999779998953899999999999999974013445555----------33210011232246899999999
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 11288340089999865287657776613688999999860145677715778
Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 (223)
Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tv 213 (223)
++ | .|..+|++.+ ..+.+||++|+++|++||+.....+.++.+
T Consensus 155 ~~--g--~~~~eIa~~l------~iS~~TV~~h~~~i~~KL~~~~~~elv~~~ 197 (208)
T 1yio_A 155 IR--G--LMNKQIAGEL------GIAEVTVKVHRHNIMQKLNVRSLANLVHLV 197 (208)
T ss_dssp TT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HC--C--CCHHHHHHHC------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 81--5--6499999972------876899999999999980999999999999