Query         gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 223
No_of_seqs    142 out of 20159
Neff          8.5 
Searched_HMMs 23785
Date          Wed Jun  1 00:03:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780526.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2oqr_A Sensory transduction pr 100.0       0       0  357.9  14.0  217    2-221     7-229 (230)
  2 2gwr_A DNA-binding response re 100.0       0       0  354.0  15.5  218    2-222     8-227 (238)
  3 1ys7_A Transcriptional regulat 100.0       0       0  347.6  17.0  218    2-222    10-232 (233)
  4 1kgs_A DRRD, DNA binding respo 100.0       0       0  343.0  14.4  218    2-222     5-224 (225)
  5 2hqr_A Putative transcriptiona 100.0       0       0  334.2  13.8  212    2-222     3-216 (223)
  6 1p2f_A Response regulator; DRR 100.0       0       0  325.3  12.8  211    2-222     5-217 (220)
  7 1yio_A Response regulatory pro 100.0 5.4E-31 2.3E-35  214.3   4.6  190    2-213     7-197 (208)
  8 1a04_A Nitrate/nitrite respons 100.0 8.5E-30 3.6E-34  206.8  10.3  192    2-206     8-202 (215)
  9 2qzj_A Two-component response   99.9 2.2E-26 9.3E-31  185.3   7.9  118    2-121     7-124 (136)
 10 1zh2_A KDP operon transcriptio  99.9 2.6E-26 1.1E-30  184.9   7.2  117    2-120     4-120 (121)
 11 3gt7_A Sensor protein; structu  99.9 8.5E-26 3.6E-30  181.6   8.3  120    2-123    10-132 (154)
 12 1s8n_A Putative antiterminator  99.9 1.4E-25 5.9E-30  180.2   8.8  117    2-120    16-133 (205)
 13 1w25_A Stalked-cell differenti  99.9 6.6E-26 2.8E-30  182.3   6.8  115    2-118     4-121 (459)
 14 1zgz_A Torcad operon transcrip  99.9 1.7E-25   7E-30  179.8   8.5  117    2-120     5-121 (122)
 15 2a9o_A Response regulator; ess  99.9 1.1E-25 4.6E-30  180.9   7.1  117    2-120     4-120 (120)
 16 2pl1_A Transcriptional regulat  99.9 1.7E-25 7.3E-30  179.7   7.9  117    2-120     3-120 (121)
 17 2pln_A HP1043, response regula  99.9 2.5E-25 1.1E-29  178.6   8.3  114    2-121    21-136 (137)
 18 3f6p_A Transcriptional regulat  99.9 3.5E-25 1.5E-29  177.7   8.8  116    2-119     5-120 (120)
 19 1mvo_A PHOP response regulator  99.9 7.9E-25 3.3E-29  175.5   8.4  119    2-122     6-125 (136)
 20 1xhf_A DYE resistance, aerobic  99.9 6.2E-25 2.6E-29  176.1   7.2  117    2-120     6-122 (123)
 21 2qxy_A Response regulator; reg  99.9 7.7E-25 3.2E-29  175.6   7.3  116    2-120     7-123 (142)
 22 3crn_A Response regulator rece  99.9 1.3E-24 5.3E-29  174.2   7.7  119    2-122     6-125 (132)
 23 3c3w_A Two component transcrip  99.9 2.1E-25 8.6E-30  179.2   3.6  194    2-209     4-200 (225)
 24 3luf_A Two-component system re  99.9 1.4E-24 5.8E-29  174.0   7.1  118    2-121   127-248 (259)
 25 2jba_A Phosphate regulon trans  99.9 1.5E-24 6.3E-29  173.7   6.8  119    2-122     5-126 (127)
 26 3jte_A Response regulator rece  99.9 3.2E-24 1.4E-28  171.7   7.7  119    2-120     6-125 (143)
 27 3cg4_A Response regulator rece  99.9 7.2E-24   3E-28  169.5   9.4  116    2-119    10-128 (142)
 28 2qr3_A Two-component system re  99.9 3.3E-24 1.4E-28  171.6   7.2  118    2-119     6-127 (140)
 29 1qkk_A DCTD, C4-dicarboxylate   99.9 2.6E-24 1.1E-28  172.2   6.5  115    2-118     6-121 (155)
 30 3hzh_A Chemotaxis response reg  99.9 4.7E-24   2E-28  170.6   7.4  117    2-118    39-157 (157)
 31 3h5i_A Response regulator/sens  99.9 1.8E-23 7.7E-28  166.9   9.7  119    2-121     8-127 (140)
 32 3gl9_A Response regulator; bet  99.9 1.1E-23 4.8E-28  168.2   8.0  114    2-117     5-121 (122)
 33 3c3m_A Response regulator rece  99.9 2.4E-23   1E-27  166.2   9.2  118    2-121     6-126 (138)
 34 2zay_A Response regulator rece  99.9 4.7E-24   2E-28  170.6   5.3  117    2-120    11-130 (147)
 35 2ayx_A Sensor kinase protein R  99.9 1.4E-23 6.1E-28  167.6   7.5  117    2-120   132-249 (254)
 36 2gkg_A Response regulator homo  99.9 2.3E-23 9.6E-28  166.3   8.3  116    2-119     8-126 (127)
 37 3lte_A Response regulator; str  99.9 3.1E-23 1.3E-27  165.5   8.8  118    2-121     9-128 (132)
 38 1gxq_A PHOB, phosphate regulon  99.9 1.7E-23 7.3E-28  167.1   7.1  100  122-222     5-104 (106)
 39 1dbw_A Transcriptional regulat  99.9 3.4E-23 1.4E-27  165.2   8.2  115    2-118     6-121 (126)
 40 3cfy_A Putative LUXO repressor  99.9 8.3E-24 3.5E-28  169.1   4.9  118    2-121     7-125 (137)
 41 3nhm_A Response regulator; pro  99.9 3.7E-23 1.5E-27  165.0   8.1  119    2-124     7-128 (133)
 42 2z9m_A Response regulator YYCF  99.9 2.9E-23 1.2E-27  165.6   7.4  101  122-223    10-111 (120)
 43 1srr_A SPO0F, sporulation resp  99.9 4.1E-23 1.7E-27  164.7   8.0  115    2-118     6-121 (124)
 44 2jzy_A Transcriptional regulat  99.9 2.3E-23 9.8E-28  166.2   6.6   99  123-222     3-101 (112)
 45 3cnb_A DNA-binding response re  99.9 6.2E-23 2.6E-27  163.6   8.7  118    2-121    11-133 (143)
 46 3hdv_A Response regulator; PSI  99.9 3.9E-23 1.6E-27  164.9   7.1  119    2-122    10-131 (136)
 47 3eod_A Protein HNR; response r  99.9 4.8E-23   2E-27  164.3   7.4  116    2-119    10-127 (130)
 48 1mb3_A Cell division response   99.9 7.6E-23 3.2E-27  163.0   8.3  117    2-120     4-123 (124)
 49 3n0r_A Response regulator; sig  99.9 7.2E-23   3E-27  163.2   7.8  114    2-119   163-278 (286)
 50 3a10_A Response regulator; pho  99.9 2.4E-22   1E-26  159.9  10.5  111    2-116     4-115 (116)
 51 1tmy_A CHEY protein, TMY; chem  99.9 9.7E-23 4.1E-27  162.3   8.3  114    2-117     5-120 (120)
 52 3cg0_A Response regulator rece  99.9 5.4E-23 2.3E-27  163.9   7.0  121    2-123    12-133 (140)
 53 3dzd_A Transcriptional regulat  99.9 6.2E-23 2.6E-27  163.6   7.2  115    2-118     3-118 (368)
 54 3hv2_A Response regulator/HD d  99.9 6.9E-23 2.9E-27  163.3   7.2  117    2-120    17-135 (153)
 55 3hdg_A Uncharacterized protein  99.9 5.9E-23 2.5E-27  163.7   6.6  114    2-117    10-124 (137)
 56 2hwv_A DNA-binding response re  99.9 6.5E-23 2.7E-27  163.4   6.8  101  121-222    16-117 (121)
 57 2jk1_A HUPR, hydrogenase trans  99.9   7E-23 2.9E-27  163.2   6.7  116    2-120     4-121 (139)
 58 3bre_A Probable two-component   99.9   3E-23 1.3E-27  165.5   4.0  114    2-117    21-138 (358)
 59 2hqn_A Putative transcriptiona  99.9 1.2E-22 4.9E-27  161.9   6.9  100  122-222     3-102 (109)
 60 2pmu_A Response regulator PHOP  99.9 1.5E-22 6.4E-27  161.1   7.5  101  120-222     6-106 (110)
 61 2rjn_A Response regulator rece  99.9   2E-22 8.3E-27  160.4   8.0  115    2-118    10-126 (154)
 62 3klo_A Transcriptional regulat  99.9 5.4E-23 2.3E-27  163.9   4.9  198    2-211    10-212 (225)
 63 3eq2_A Probable two-component   99.9 1.8E-22 7.5E-27  160.7   7.6  113    2-116     8-122 (394)
 64 1opc_A OMPR, OMPRC; transcript  99.9 1.6E-22 6.6E-27  161.0   7.1  100  122-222     5-105 (110)
 65 1dc7_A NTRC, nitrogen regulati  99.9 9.4E-24 3.9E-28  168.7   0.7  118    1-120     5-123 (124)
 66 1jbe_A Chemotaxis protein CHEY  99.9 3.3E-22 1.4E-26  159.0   7.8  116    2-119     7-126 (128)
 67 3kto_A Response regulator rece  99.9 4.3E-23 1.8E-27  164.6   3.3  121    1-121     8-129 (136)
 68 3f6c_A Positive transcription   99.9 3.5E-22 1.5E-26  158.8   7.7  120    2-123     4-125 (134)
 69 1ny5_A Transcriptional regulat  99.9 4.1E-22 1.7E-26  158.4   7.8  114    2-117     3-117 (387)
 70 3cu5_A Two component transcrip  99.9 3.2E-22 1.4E-26  159.1   7.2  115    2-118     5-123 (141)
 71 1k66_A Phytochrome response re  99.9 4.6E-22 1.9E-26  158.1   7.9  116    2-119     9-139 (149)
 72 3grc_A Sensor protein, kinase;  99.9 7.5E-22 3.2E-26  156.7   8.5  117    2-120     9-129 (140)
 73 2k4j_A Putative transcriptiona  99.9 2.3E-22 9.8E-27  159.9   5.9   98  124-222    17-115 (115)
 74 2b4a_A BH3024; 10175646, struc  99.9 1.2E-21   5E-26  155.5   9.1  113    2-119    18-132 (138)
 75 3kht_A Response regulator; PSI  99.9 6.3E-22 2.7E-26  157.2   7.1  116    2-119     8-129 (144)
 76 3kcn_A Adenylate cyclase homol  99.9 9.2E-22 3.9E-26  156.2   7.8  115    2-119     7-124 (151)
 77 3h1g_A Chemotaxis protein CHEY  99.9   1E-21 4.4E-26  155.8   7.8  116    2-119     8-128 (129)
 78 3m6m_D Sensory/regulatory prot  99.8 1.3E-21 5.4E-26  155.3   7.7  116    2-119    17-137 (143)
 79 1dz3_A Stage 0 sporulation pro  99.8 1.6E-21 6.7E-26  154.7   8.0  118    2-121     5-126 (130)
 80 1i3c_A Response regulator RCP1  99.8 1.5E-21 6.2E-26  154.9   7.5  114    2-117    11-136 (149)
 81 1k68_A Phytochrome response re  99.8 1.5E-21 6.5E-26  154.8   7.6  115    2-118     5-131 (140)
 82 3b2n_A Uncharacterized protein  99.8 1.1E-21 4.6E-26  155.7   6.6  116    2-119     6-124 (133)
 83 3lua_A Response regulator rece  99.8 8.9E-22 3.7E-26  156.3   6.0  118    2-121     7-130 (140)
 84 1p6q_A CHEY2; chemotaxis, sign  99.8 1.3E-21 5.6E-26  155.2   6.6  115    2-118     9-127 (129)
 85 3cz5_A Two-component response   99.8 2.8E-21 1.2E-25  153.1   7.9  116    2-119     8-126 (153)
 86 3heb_A Response regulator rece  99.8 4.1E-21 1.7E-25  152.1   8.4  114    2-117     7-134 (152)
 87 2r25_B Osmosensing histidine p  99.8 4.6E-21 1.9E-25  151.8   8.1  116    2-119     5-128 (133)
 88 2qsj_A DNA-binding response re  99.8 3.9E-21 1.6E-25  152.3   6.9  116    2-119     6-125 (154)
 89 2qv0_A Protein MRKE; structura  99.8 5.7E-21 2.4E-25  151.2   6.9  116    2-121    12-130 (143)
 90 3eul_A Possible nitrate/nitrit  99.8 7.5E-21 3.2E-25  150.4   7.4  116    2-119    18-136 (152)
 91 3i42_A Response regulator rece  99.8 1.6E-20 6.8E-25  148.4   8.9  112    2-116     6-120 (127)
 92 1dcf_A ETR1 protein; beta-alph  99.8   2E-20 8.3E-25  147.8   7.2  114    2-118    10-129 (136)
 93 2j48_A Two-component sensor ki  99.8   5E-20 2.1E-24  145.3   8.9  111    2-117     4-117 (119)
 94 3c97_A Signal transduction his  99.8 4.4E-20 1.9E-24  145.6   8.4  112    2-118    13-130 (140)
 95 3eqz_A Response regulator; str  99.8 1.7E-20   7E-25  148.3   5.4  117    2-121     6-128 (135)
 96 2qvg_A Two component response   99.8 6.3E-20 2.7E-24  144.6   7.6  112    2-115    10-132 (143)
 97 2rdm_A Response regulator rece  99.8   2E-19 8.4E-24  141.5   9.6  117    2-121     8-126 (132)
 98 3kyj_B CHEY6 protein, putative  99.8 2.4E-19   1E-23  141.0   6.2  104    2-107    16-124 (145)
 99 3ilh_A Two component response   99.8 2.3E-18 9.9E-23  134.7   8.7  117    2-120    12-141 (146)
100 1qo0_D AMIR; binding protein,   99.8 3.8E-19 1.6E-23  139.7   4.4  110    2-117    15-124 (196)
101 1a2o_A CHEB methylesterase; ba  99.7 4.2E-18 1.8E-22  133.2   8.1  113    2-116     6-131 (349)
102 3cwo_X Beta/alpha-barrel prote  99.5 1.5E-15 6.3E-20  117.1   1.9   82   25-108     7-89  (237)
103 3luf_A Two-component system re  99.3 5.4E-13 2.3E-17  101.0   2.6  103    2-108     7-110 (259)
104 2ff4_A Probable regulatory pro  98.6 1.9E-08   8E-13   72.3   4.4   84  139-222    20-105 (388)
105 1w25_A Stalked-cell differenti  98.1 7.9E-06 3.3E-10   55.8   7.1  111    2-116   155-268 (459)
106 3c57_A Two component transcrip  97.4 9.7E-05 4.1E-09   49.0   4.0   61  147-217    26-86  (95)
107 2q0o_A Probable transcriptiona  97.3 0.00021 8.7E-09   46.9   4.1   53  146-208   173-225 (236)
108 1l3l_A Transcriptional activat  97.2 0.00025   1E-08   46.4   3.9   55  144-208   169-223 (234)
109 1je8_A Nitrate/nitrite respons  97.2 0.00025 1.1E-08   46.4   3.9   54  147-210    20-73  (82)
110 1fse_A GERE; helix-turn-helix   97.0 7.5E-05 3.2E-09   49.7   0.0   56  147-212    10-65  (74)
111 1x3u_A Transcriptional regulat  97.0 6.1E-05 2.6E-09   50.2  -0.5   55  148-212    16-70  (79)
112 2vyc_A Biodegradative arginine  97.0 0.00044 1.9E-08   44.8   3.6  117    2-118     3-133 (755)
113 2krf_A Transcriptional regulat  97.0 0.00012   5E-09   48.4   0.7   59  145-213     9-67  (73)
114 3clo_A Transcriptional regulat  96.9 0.00013 5.3E-09   48.2   0.1   55  147-211   196-250 (258)
115 1p4w_A RCSB; solution structur  96.9  0.0001 4.3E-09   48.9  -0.4   56  147-212    33-88  (99)
116 2rnj_A Response regulator prot  96.8 0.00014   6E-09   47.9  -0.3   53  148-210    29-81  (91)
117 1bia_A BIRA bifunctional prote  96.5  0.0043 1.8E-07   38.6   5.4   19  160-178   225-243 (321)
118 2jpc_A SSRB; DNA binding prote  96.2 0.00072   3E-08   43.5   0.2   57  152-218     2-58  (61)
119 2yxb_A Coenzyme B12-dependent   94.7   0.048   2E-06   32.0   5.3  110    6-116    29-143 (161)
120 3k69_A Putative transcription   93.6    0.12   5E-06   29.5   5.5   53  156-221    17-71  (162)
121 2i2x_B MTAC, methyltransferase  92.6     0.5 2.1E-05   25.6   7.5  101    6-109   134-238 (258)
122 1ylf_A RRF2 family protein; st  92.1    0.17   7E-06   28.6   4.5   18  159-176    22-39  (149)
123 1xm3_A Thiazole biosynthesis p  90.3     0.2 8.4E-06   28.1   3.4   85   16-102   119-208 (264)
124 1y80_A Predicted cobalamin bin  90.3    0.35 1.5E-05   26.6   4.6   88   11-101   104-197 (210)
125 3lwf_A LIN1550 protein, putati  89.9    0.56 2.3E-05   25.3   5.4   63  147-222    20-88  (159)
126 2g9w_A Conserved hypothetical   89.5    0.34 1.4E-05   26.6   4.1   53  145-200     3-55  (138)
127 1ccw_A Protein (glutamate muta  89.2    0.65 2.8E-05   24.9   5.3  108    6-114    14-132 (137)
128 2k4b_A Transcriptional regulat  88.8    0.28 1.2E-05   27.2   3.2   54  143-200    27-80  (99)
129 1wv2_A Thiazole moeity, thiazo  88.6     0.7 2.9E-05   24.7   5.2   84   16-101   128-216 (265)
130 2d1h_A ST1889, 109AA long hypo  87.8    0.32 1.4E-05   26.8   3.1   46  147-199    17-62  (109)
131 1okr_A MECI, methicillin resis  87.7    0.27 1.1E-05   27.3   2.6   55  143-201     2-56  (123)
132 1sd4_A Penicillinase repressor  86.7    0.46 1.9E-05   25.9   3.3   53  144-200     3-55  (126)
133 3fkq_A NTRC-like two-domain pr  85.7     1.9 7.8E-05   22.0   7.8   99    2-115    24-125 (373)
134 1id1_A Putative potassium chan  85.4     1.3 5.3E-05   23.1   5.0   93    2-99     29-123 (153)
135 3ezx_A MMCP 1, monomethylamine  85.0       1 4.3E-05   23.7   4.4   96    6-104   103-206 (215)
136 1p6r_A Penicillinase repressor  84.9    0.46 1.9E-05   25.8   2.6   51  147-201     5-55  (82)
137 2frh_A SARA, staphylococcal ac  84.5    0.49 2.1E-05   25.7   2.6   50  145-200    31-80  (127)
138 1p4x_A Staphylococcal accessor  82.0    0.94   4E-05   23.9   3.2   50  145-200   152-201 (250)
139 2z99_A Putative uncharacterize  81.6     2.1 8.8E-05   21.7   4.9   34  143-179    92-125 (219)
140 2o8x_A Probable RNA polymerase  81.5     1.1 4.6E-05   23.5   3.4   51  147-206    14-64  (70)
141 1xsv_A Hypothetical UPF0122 pr  80.0     1.2 4.9E-05   23.3   3.1   46  149-203    26-71  (113)
142 3bro_A Transcriptional regulat  80.0     1.3 5.6E-05   22.9   3.4   50  146-205    29-78  (141)
143 1jhf_A LEXA repressor; LEXA SO  79.5       1 4.3E-05   23.6   2.7   40  126-166   125-164 (202)
144 3l9w_A Glutathione-regulated p  79.5     1.7 7.2E-05   22.2   3.8   91    2-101    30-122 (413)
145 1qv9_A F420-dependent methylen  78.8     3.4 0.00014   20.4   5.2   81   22-105    31-123 (283)
146 1t6s_A Conserved hypothetical   78.1     2.8 0.00012   20.8   4.6   34  144-180    87-120 (162)
147 3fwz_A Inner membrane protein   76.8     3.9 0.00016   20.0   5.5   90    2-100    33-124 (140)
148 3k2z_A LEXA repressor; winged   76.7     1.4 5.8E-05   22.8   2.7   16   10-25      9-24  (196)
149 1req_A Methylmalonyl-COA mutas  75.4     4.2 0.00018   19.8   6.9   13   92-104   356-368 (727)
150 1s7o_A Hypothetical UPF0122 pr  75.1     1.8 7.4E-05   22.1   2.9   46  149-203    23-68  (113)
151 1ka9_F Imidazole glycerol phos  74.9     4.3 0.00018   19.7   5.6   69   34-102    36-105 (252)
152 3bw2_A 2-nitropropane dioxygen  74.2     4.5 0.00019   19.6   8.0   85   15-100   137-236 (369)
153 3hug_A RNA polymerase sigma fa  73.9     2.4   1E-04   21.3   3.3   47  148-203    37-83  (92)
154 1wl8_A GMP synthase [glutamine  73.2     4.8  0.0002   19.4   6.4   77    1-79      2-79  (189)
155 3mzy_A RNA polymerase sigma-H   72.8     2.5 0.00011   21.2   3.2   45  150-204   111-155 (164)
156 1qdl_B Protein (anthranilate s  72.7     4.1 0.00017   19.8   4.3   77    1-79      3-84  (195)
157 3eco_A MEPR; mutlidrug efflux   71.9     3.2 0.00013   20.5   3.6   47  147-203    27-73  (139)
158 1y0e_A Putative N-acetylmannos  70.6     1.4   6E-05   22.7   1.5   13  165-177   182-194 (223)
159 2wte_A CSA3; antiviral protein  70.5       3 0.00012   20.7   3.1   58  148-220   149-207 (244)
160 3c85_A Putative glutathione-re  70.0     5.6 0.00024   19.0   4.9   35   60-96    119-154 (183)
161 2o3f_A Putative HTH-type trans  69.3     1.6 6.6E-05   22.5   1.5   51  145-205    15-67  (111)
162 2w6r_A Imidazole glycerol phos  69.1     5.9 0.00025   18.9   5.3   86   23-108    24-116 (266)
163 1or7_A Sigma-24, RNA polymeras  69.0     3.2 0.00013   20.5   3.0   48  148-204   140-187 (194)
164 3k0l_A Repressor protein; heli  67.9       5 0.00021   19.3   3.8   45  147-199    42-86  (162)
165 1lj9_A Transcriptional regulat  66.8     5.2 0.00022   19.2   3.8   45  146-198    24-68  (144)
166 3ech_A MEXR, multidrug resista  66.4     5.2 0.00022   19.2   3.7   46  146-199    32-77  (142)
167 3bpv_A Transcriptional regulat  66.3     4.9 0.00021   19.3   3.6   46  145-198    23-68  (138)
168 3bja_A Transcriptional regulat  66.0     5.4 0.00023   19.1   3.7   46  146-199    28-73  (139)
169 3llv_A Exopolyphosphatase-rela  66.0     6.8 0.00029   18.5   6.5   88    2-97     32-119 (141)
170 1sfx_A Conserved hypothetical   65.9     3.8 0.00016   20.1   2.9   49  145-205    14-62  (109)
171 3jw4_A Transcriptional regulat  64.9     3.6 0.00015   20.2   2.7   47  147-199    37-83  (148)
172 3oop_A LIN2960 protein; protei  64.2     4.8  0.0002   19.4   3.2   46  146-199    32-77  (143)
173 1mzb_A Ferric uptake regulatio  64.2     3.9 0.00016   20.0   2.7   58  143-205    10-67  (136)
174 2fbh_A Transcriptional regulat  64.2     7.1  0.0003   18.3   4.0   28  149-177    35-62  (146)
175 2pex_A Transcriptional regulat  62.5     5.9 0.00025   18.9   3.4   30  146-177    42-71  (153)
176 3boq_A Transcriptional regulat  62.1     6.5 0.00027   18.6   3.5   29  148-177    44-72  (160)
177 3kfw_X Uncharacterized protein  62.0     8.1 0.00034   18.0   5.3   22  194-215   219-241 (247)
178 3deu_A Transcriptional regulat  61.9     6.4 0.00027   18.6   3.5   45  147-198    49-93  (166)
179 3nqo_A MARR-family transcripti  61.8     5.8 0.00024   18.9   3.2   17  146-162   100-116 (189)
180 1i1q_B Anthranilate synthase c  61.4     8.2 0.00035   17.9   6.3   73    2-79      3-83  (192)
181 1jgs_A Multiple antibiotic res  60.6     6.7 0.00028   18.5   3.4   44  147-198    30-73  (138)
182 2p7v_B Sigma-70, RNA polymeras  60.4     8.5 0.00036   17.8   3.9   53  148-206     5-58  (68)
183 1qop_A Tryptophan synthase alp  60.0     8.7 0.00037   17.8   5.3   80   29-108    27-136 (268)
184 2vn2_A DNAD, chromosome replic  59.7     6.7 0.00028   18.5   3.3   52  143-200    24-78  (128)
185 3nrv_A Putative transcriptiona  59.3     8.4 0.00035   17.9   3.7   43  147-197    36-78  (148)
186 1ep3_A Dihydroorotate dehydrog  59.0     1.7 7.1E-05   22.3   0.1   60   41-100   121-195 (311)
187 3iwf_A Transcription regulator  58.9       3 0.00013   20.7   1.4   48  147-204    13-62  (107)
188 3bdd_A Regulatory protein MARR  58.6     6.8 0.00029   18.4   3.2   45  147-199    27-71  (142)
189 2p5v_A Transcriptional regulat  58.2       8 0.00033   18.0   3.4   11   62-72     87-97  (162)
190 2w57_A Ferric uptake regulatio  58.2     4.7  0.0002   19.5   2.2   57  144-205    10-66  (150)
191 2qww_A Transcriptional regulat  58.0     7.1  0.0003   18.3   3.2   27  149-177    39-65  (154)
192 1geq_A Tryptophan synthase alp  57.9     9.5  0.0004   17.6   6.0   48   59-106    67-120 (248)
193 2cg4_A Regulatory protein ASNC  57.4     8.7 0.00037   17.8   3.5   13   62-74     12-24  (152)
194 3cdh_A Transcriptional regulat  57.3     8.1 0.00034   18.0   3.3   27  149-177    41-67  (155)
195 1ujp_A Tryptophan synthase alp  55.3     3.1 0.00013   20.6   0.9   62   45-106    42-131 (271)
196 2aef_A Calcium-gated potassium  55.2      10 0.00044   17.3   3.9   89    2-99     33-123 (234)
197 1i1g_A Transcriptional regulat  54.8      11 0.00045   17.2   3.6   15   61-75      7-21  (141)
198 1thf_D HISF protein; thermophI  54.8      11 0.00045   17.2   5.9   69   34-102    35-104 (253)
199 3kts_A Glycerol uptake operon   54.7     8.6 0.00036   17.8   3.1   70   28-109    15-87  (192)
200 3cjn_A Transcriptional regulat  54.1     9.1 0.00038   17.7   3.2   44  148-199    49-92  (162)
201 2fbk_A Transcriptional regulat  54.1     8.3 0.00035   17.9   3.0   18  145-162   128-145 (181)
202 2rdp_A Putative transcriptiona  54.0      10 0.00042   17.4   3.4   47  146-204    37-83  (150)
203 1a53_A IGPS, indole-3-glycerol  53.2      11 0.00047   17.1   6.9   59   42-101    74-132 (247)
204 1r8j_A KAIA; circadian clock p  52.7      11 0.00048   17.0   7.4   74    6-81     16-90  (289)
205 2xij_A Methylmalonyl-COA mutas  51.8      12  0.0005   16.9   7.3   90   10-100   619-713 (762)
206 2fa5_A Transcriptional regulat  51.7      11 0.00046   17.2   3.3   45  147-203    45-89  (162)
207 1ub9_A Hypothetical protein PH  51.4     7.6 0.00032   18.1   2.4   42  150-199    15-56  (100)
208 2bv6_A MGRA, HTH-type transcri  51.3      11 0.00045   17.2   3.2   44  147-198    33-76  (142)
209 2fu4_A Ferric uptake regulatio  50.9      11 0.00048   17.0   3.3   58  143-205     9-66  (83)
210 2hr3_A Probable transcriptiona  50.3      10 0.00043   17.4   2.9   29  148-177    32-60  (147)
211 2fxa_A Protease production reg  50.1      12 0.00052   16.8   3.3   18  146-163   105-122 (207)
212 2cyy_A Putative HTH-type trans  50.1      13 0.00053   16.8   3.6   21   55-76      5-25  (151)
213 2a61_A Transcriptional regulat  49.3      12  0.0005   16.9   3.1   44  147-198    29-72  (145)
214 2v5j_A 2,4-dihydroxyhept-2-ENE  49.3      13 0.00055   16.7   4.7   94   13-109    28-126 (287)
215 1z91_A Organic hydroperoxide r  49.1     9.9 0.00042   17.4   2.7   28  148-177    37-64  (147)
216 2q1z_A RPOE, ECF SIGE; ECF sig  48.6     2.5  0.0001   21.2  -0.4   47  148-203   135-181 (184)
217 3g3z_A NMB1585, transcriptiona  48.4      13 0.00053   16.8   3.2   28  148-177    28-55  (145)
218 3igs_A N-acetylmannosamine-6-p  47.9      14 0.00057   16.6   6.1   18   61-78     58-75  (232)
219 2htm_A Thiazole biosynthesis p  47.6      11 0.00048   17.0   2.8   84   16-101   117-207 (268)
220 3bj6_A Transcriptional regulat  47.5      13 0.00056   16.6   3.2   27  149-177    38-64  (152)
221 3nav_A Tryptophan synthase alp  47.5      14 0.00058   16.5   5.3   79   29-107    30-138 (271)
222 2fbi_A Probable transcriptiona  47.4      12 0.00049   17.0   2.9   44  148-199    33-76  (142)
223 2dbb_A Putative HTH-type trans  47.4      14 0.00058   16.5   3.4   18   61-78     12-29  (151)
224 2v79_A DNA replication protein  47.3     9.7 0.00041   17.5   2.4   50  145-200    26-78  (135)
225 2e1c_A Putative HTH-type trans  46.9      14 0.00059   16.5   3.3   18   61-78     30-47  (171)
226 2eth_A Transcriptional regulat  46.7      13 0.00056   16.6   3.1   28  148-177    41-68  (154)
227 2nyx_A Probable transcriptiona  45.7      14 0.00058   16.5   3.0   17  146-162   102-118 (168)
228 3b73_A PHIH1 repressor-like pr  45.2      12  0.0005   16.9   2.6   44  149-198    11-54  (111)
229 2nnn_A Probable transcriptiona  43.9      16 0.00066   16.2   3.1   46  148-205    35-80  (140)
230 3hsr_A HTH-type transcriptiona  43.7      16 0.00066   16.2   3.0   29  147-177    32-60  (140)
231 1vzw_A Phosphoribosyl isomeras  43.3      16 0.00067   16.1   3.2   70   33-102    36-105 (244)
232 2z6i_A Trans-2-enoyl-ACP reduc  42.5      16 0.00069   16.0   6.8   85   15-100   102-190 (332)
233 3khj_A Inosine-5-monophosphate  42.1      17  0.0007   16.0   8.2   58   39-98    113-170 (361)
234 2gjl_A Hypothetical protein PA  42.0      17 0.00071   16.0   8.3   85   15-100   110-200 (328)
235 3lmm_A Uncharacterized protein  41.3      17 0.00073   15.9   3.2   48  145-200   424-471 (583)
236 1yxy_A Putative N-acetylmannos  41.0     6.4 0.00027   18.6   0.7   17   62-78     59-75  (234)
237 2fe3_A Peroxide operon regulat  40.4      16 0.00069   16.0   2.7   57  144-206    15-71  (145)
238 1s3j_A YUSO protein; structura  40.1      16 0.00067   16.1   2.6   16  146-161    94-109 (155)
239 1tlh_B Sigma-70, RNA polymeras  39.7      18 0.00077   15.8   3.0   53  148-206    18-71  (81)
240 1dxe_A 2-dehydro-3-deoxy-galac  38.8      19 0.00079   15.7   5.7  187   14-205     9-210 (256)
241 3etn_A Putative phosphosugar i  37.4      20 0.00083   15.5   4.6   70   11-81     73-144 (220)
242 2x4h_A Hypothetical protein SS  36.6      20 0.00086   15.5   3.5   43  154-203    85-127 (139)
243 1jvn_A Glutamine, bifunctional  36.4      21 0.00086   15.4   4.5   45    1-49      6-50  (555)
244 1h5y_A HISF; histidine biosynt  36.4      21 0.00086   15.4   5.1   70   33-102    37-107 (253)
245 1ku3_A Sigma factor SIGA; heli  36.4      21 0.00086   15.4   3.6   51  148-204    10-61  (73)
246 1yad_A Regulatory protein TENI  36.1      12  0.0005   16.9   1.5   28   75-103   112-139 (221)
247 1rp3_A RNA polymerase sigma fa  36.1      21 0.00087   15.4   3.3   46  148-202   187-232 (239)
248 3fm5_A Transcriptional regulat  35.8      21 0.00088   15.4   2.8   28  149-177    37-64  (150)
249 2hmt_A YUAA protein; RCK, KTN,  35.6      21 0.00089   15.4   3.0   21    3-27     33-53  (144)
250 2o03_A Probable zinc uptake re  35.2      19  0.0008   15.6   2.4   56  145-206     5-60  (131)
251 3i4p_A Transcriptional regulat  35.0      22 0.00091   15.3   3.6   10   63-72      8-17  (162)
252 1rd5_A Tryptophan synthase alp  34.5      22 0.00093   15.2   5.0   69   38-106    38-130 (262)
253 3e6m_A MARR family transcripti  33.8      22 0.00091   15.3   2.5   46  147-200    49-94  (161)
254 3cuo_A Uncharacterized HTH-typ  33.8      23 0.00095   15.2   3.2   41  151-199    24-64  (99)
255 1stz_A Heat-inducible transcri  32.1      24   0.001   15.0   2.5   19    9-28     53-71  (338)
256 2xed_A Putative maleate isomer  31.9      24   0.001   15.0   5.5   12   39-50     86-97  (273)
257 1i4n_A Indole-3-glycerol phosp  31.6      25   0.001   14.9   8.2   56   44-100    74-129 (251)
258 3cni_A Putative ABC type-2 tra  31.3      25   0.001   14.9   6.3   69    2-79     13-82  (156)
259 3eyy_A Putative iron uptake re  30.0      25  0.0011   14.9   2.3   55  144-205    12-66  (145)
260 1rzu_A Glycogen synthase 1; gl  29.9      26  0.0011   14.8   5.6   21   10-30     21-41  (485)
261 1jub_A Dihydroorotate dehydrog  29.9      13 0.00055   16.7   0.8   14  165-178   249-262 (311)
262 2w25_A Probable transcriptiona  29.0      27  0.0011   14.7   3.3   13   63-75     12-24  (150)
263 2r6o_A Putative diguanylate cy  27.7      22 0.00091   15.3   1.6   15  185-199   264-278 (294)
264 1vrd_A Inosine-5'-monophosphat  27.3      21  0.0009   15.3   1.6   60   38-99    244-304 (494)
265 3neu_A LIN1836 protein; struct  27.0      29  0.0012   14.4   4.9   45  164-221    33-78  (125)
266 3by6_A Predicted transcription  26.6      30  0.0013   14.4   4.4   12  209-220    64-75  (126)
267 2qzs_A Glycogen synthase; glyc  26.5      30  0.0013   14.4   5.3   21   10-30     21-41  (485)
268 1tty_A Sigma-A, RNA polymerase  26.1      31  0.0013   14.3   4.0   52  148-205    18-70  (87)
269 1y0u_A Arsenical resistance op  25.1      32  0.0013   14.2   4.7   52  152-221    32-83  (96)
270 3i65_A Dihydroorotate dehydrog  24.7      19 0.00079   15.7   0.9   13  165-177   352-364 (415)
271 2vws_A YFAU, 2-keto-3-deoxy su  24.2      33  0.0014   14.1   7.3   96   13-109     7-105 (267)
272 3dqq_A Putative tRNA synthase;  24.0      34  0.0014   14.1   4.9   56    2-60      5-61  (421)
273 1dl5_A Protein-L-isoaspartate   23.9      32  0.0014   14.2   2.0   64    4-71    105-169 (317)
274 3p0w_A Mandelate racemase/muco  23.7      14 0.00057   16.6  -0.0   43   60-102   287-329 (470)
275 3gz3_A Dihydroorotate dehydrog  23.6      20 0.00083   15.5   0.8   14  165-178   284-297 (354)
276 2e6f_A Dihydroorotate dehydrog  23.5      19 0.00079   15.7   0.7   16  163-178   249-264 (314)
277 1uf3_A Hypothetical protein TT  23.4      34  0.0014   14.0   4.0   50   35-84     24-75  (228)
278 3dn7_A Cyclic nucleotide bindi  23.3      12 0.00051   16.9  -0.3   43  149-202   149-193 (194)
279 1ec7_A Glucarate dehydratase;   23.2      14  0.0006   16.4   0.0   45   59-103   270-314 (446)
280 3fxa_A SIS domain protein; YP_  22.8      35  0.0015   14.0   3.5   20   12-31     60-79  (201)
281 3ffs_A Inosine-5-monophosphate  22.1      36  0.0015   13.9   8.6   58   39-98    152-209 (400)
282 3oix_A Putative dihydroorotate  22.0      23 0.00095   15.2   0.8   15  164-178   281-295 (345)
283 1jcn_A Inosine monophosphate d  22.0      35  0.0015   14.0   1.8   58   39-98    263-321 (514)
284 1zfj_A Inosine monophosphate d  21.9      27  0.0011   14.7   1.2   57   41-99    243-300 (491)
285 1vhc_A Putative KHG/KDPG aldol  21.8      37  0.0016   13.8   3.1   94   13-110     8-104 (224)
286 2c6q_A GMP reductase 2; TIM ba  21.5      26  0.0011   14.8   1.0   56   43-100   132-188 (351)
287 1eep_A Inosine 5'-monophosphat  21.3      32  0.0013   14.2   1.5   60   38-99    160-220 (404)
288 1d3g_A Dihydroorotate dehydrog  21.0      21  0.0009   15.3   0.6   13  165-177   305-317 (367)
289 3kp7_A Transcriptional regulat  20.9      39  0.0016   13.7   3.8   14  147-160    97-110 (151)
290 1vcf_A Isopentenyl-diphosphate  20.5      39  0.0017   13.7   1.9   16   84-99    195-210 (332)
291 2zru_A Isopentenyl-diphosphate  20.1      27  0.0011   14.7   0.9   42   60-101   175-218 (368)
292 1xi3_A Thiamine phosphate pyro  20.0      40  0.0017   13.6   7.4   28   75-103   110-137 (215)

No 1  
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=100.00  E-value=0  Score=357.89  Aligned_cols=217  Identities=25%  Similarity=0.399  Sum_probs=201.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+  |+++|+++++.++..+++||||+|++
T Consensus         7 ILlVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilDi~l--p~~~g~~~~~~~~~~~~~pii~lt~~   84 (230)
T 2oqr_A            7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTDVCKQLRARSSVPVIMVTAR   84 (230)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             9999699999999999999879999998999999999974899899994899--99888742023224564079998244


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             21000011122201000102333332100000111222222-----2112222222222222222222332124210123
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI  156 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l  156 (223)
                      ++.++++++|++||||||+|||+++||++|+++++||....     ...+..|++.+|...++++++|+.+.||++||+|
T Consensus        85 ~~~~~~~~~l~~Gaddyl~KP~~~~eL~ari~~~~rr~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~g~~i~LT~~E~~l  164 (230)
T 2oqr_A           85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDL  164 (230)
T ss_dssp             HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHH
T ss_conf             67688888887699889969999999999999998431455555667759989999822458999899897179999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEEC
Q ss_conf             4432112883400899998652876577766136889999998601456-7771577868630313
Q gi|254780526|r  157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID  221 (223)
Q Consensus       157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~  221 (223)
                      |.+|++|+|++|||++|.+++||. +...++|||++||+||||||+..+ ....|+||||.||+|+
T Consensus       165 L~~L~~~~~~vvsr~~l~~~vwg~-~~~~~~~tv~~~I~rLRkKL~~~~~~~~~I~Tvrg~GY~l~  229 (230)
T 2oqr_A          165 LEYLMRNSGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE  229 (230)
T ss_dssp             HHHHHHTTTSCEEHHHHHHHHTSS-CCTTHHHHHHHHHHHHHHHHCSSSSSCSSEEEETTTEEEEC
T ss_pred             HHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEE
T ss_conf             999981899862699999986397-76888677999999999974217899975998737218980


No 2  
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=100.00  E-value=0  Score=353.96  Aligned_cols=218  Identities=20%  Similarity=0.286  Sum_probs=202.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.+  |+++|+++++.+|+.++.|+|++|+.
T Consensus         8 ILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilD~~l--p~~~g~~~~~~~r~~~~~~iIilt~~   85 (238)
T 2gwr_A            8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGIDVCRVLRADSGVPIVMLTAK   85 (238)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             9999399999999999999779999998999999999983799999991677--66688712311223566531101258


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2100001112220100010233333210000011122222-221122222222222222222223321242101234432
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL  160 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L  160 (223)
                      ++.++++++|++||||||+|||+++||.+|+++++||... ....+.+|++.+|+.+++++++|+.+.||++||+||.+|
T Consensus        86 ~~~~~~~~al~~Gaddyl~KP~~~~eL~ari~a~lrr~~~~~~~~~~~~~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L  165 (238)
T 2gwr_A           86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVAL  165 (238)
T ss_dssp             TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCEEECCHHEEEEECCEEEECCHHHHHHHHHH
T ss_conf             99999999997799880218999999999999996324578763784188587310309988998985689999999999


Q ss_pred             HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC
Q ss_conf             112883400899998652876577766136889999998601456-77715778686303138
Q gi|254780526|r  161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~  222 (223)
                      ++|+|++|||++|.+.+||. +...++|||++||+|||+||+..+ .+.+|+||||+||+|+.
T Consensus       166 ~~~~g~vvsr~~l~~~vwg~-~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~Tvrg~GYrl~~  227 (238)
T 2gwr_A          166 ARKPRQVFTRDVLLEQVWGY-RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGP  227 (238)
T ss_dssp             HHSTTCCBCHHHHHHHHTCC-C--CCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECC
T ss_pred             HHCCCCEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECC
T ss_conf             76799708599999874477-668874769999999999753178999869987688477878


No 3  
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=100.00  E-value=0  Score=347.61  Aligned_cols=218  Identities=24%  Similarity=0.318  Sum_probs=200.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+  |+++|+++++.+|+. +.+|||++|+
T Consensus        10 ILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dlvilD~~l--p~~~g~~~~~~~r~~~~~~~iiilt~   87 (233)
T 1ys7_A           10 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINM--PVLDGVSVVTALRAMDNDVPVCVLSA   87 (233)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSC--SSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEECCCCCCCCCEECCCC
T ss_conf             9999799999999999999789999998999999999974799789752238--75568622310123577762331456


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             32100001112220100010233333210000011122222----22112222222222222222222332124210123
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI  156 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~----~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l  156 (223)
                      +++.+++++||++||||||+|||+++||.||+++++++...    .+.....|++.+|...++++++|+.+.||++||.+
T Consensus        88 ~~~~~~~v~al~~GAddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~g~~i~LT~~E~~l  167 (233)
T 1ys7_A           88 RSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDL  167 (233)
T ss_dssp             CCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCHHHHH
T ss_conf             68899999999779929997899879999999999986402454443222358754565442999999999647047899


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             443211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      |.+|++|+|+++||++|.+.+||. +..+++|||++||+|||+||+..+++.+|+||||.||+|+.
T Consensus       168 L~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~rtvd~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  232 (233)
T 1ys7_A          168 LAVLAEHKTAVLSRAQLLELVWGY-DFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRM  232 (233)
T ss_dssp             HHHHHHTTTCCBCHHHHHHHHHCC-CCC-CCCHHHHHHHHHHHHHHCC--CCCEEEETTTEEEECC
T ss_pred             HHHHHHCCCEEEEHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEE
T ss_conf             999985378888199999998486-77888476999999999971778999809996272189986


No 4  
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=100.00  E-value=0  Score=342.96  Aligned_cols=218  Identities=21%  Similarity=0.334  Sum_probs=201.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..|.+++++..+.....||++++|+.+  |+++|+++++.+|+. +.+|||++|+
T Consensus         5 ILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~l--p~~~g~~~~~~ir~~~~~~pii~ls~   82 (225)
T 1kgs_A            5 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWEILKSMRESGVNTPVLMLTA   82 (225)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCHHHHHHCCCCCCCEEECCC
T ss_conf             9999299999999999999879999998999999999972899899994677--65431010122111345675320233


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             32100001112220100010233333210000011122222-22112222222222222222222332124210123443
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY  159 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~  159 (223)
                      .++.++.++++++||||||.|||+++||.+|+++.+++... .......|++.++...++++.+|+.+.||++||+||++
T Consensus        83 ~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~  162 (225)
T 1kgs_A           83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEY  162 (225)
T ss_dssp             SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHHHHHHHH
T ss_conf             44167899999779985245899999999999999711334677533047644566550311289786265799999999


Q ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      |++|+|+++||++|++++||. +...++|||++||+|||+||+..+....|+||||+||+|+.
T Consensus       163 L~~~~~~vvsr~~L~~~vwg~-~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~GY~l~~  224 (225)
T 1kgs_A          163 LVMNKNRVVTKEELQEHLWSF-DDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD  224 (225)
T ss_dssp             HHHTTTSCEEHHHHHHHCC------CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEECC
T ss_pred             HHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEE
T ss_conf             875243444299999987177-77876576999999999984577999948991360089823


No 5  
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=100.00  E-value=0  Score=334.15  Aligned_cols=212  Identities=25%  Similarity=0.366  Sum_probs=193.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++..+.....||+++      ||+++|+++|+.+|+. +.+|||++|+
T Consensus         3 ILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~Dlvi------lp~~~G~~l~~~ir~~~~~~pIi~lt~   76 (223)
T 2hqr_A            3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDKNALSFVSRIKEKHSSIVVLVSSD   76 (223)
T ss_dssp             EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCTTHHHHHHHHHHHCTTSEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE------ECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             99993899999999999998799999989999999998458999999------589889999999876489832998236


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             3210000111222010001023333-321000001112222222112222222222222222222332124210123443
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY  159 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~-~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~  159 (223)
                      +++.++++++|++|||||+.|||++ ++|.+++++++|+..  ...+..+++.++...++++.+|+.+.||++||++|++
T Consensus        77 ~~~~~~~~~~l~~Gaddyl~KP~~~~~~l~~~~~~~~r~~~--~~~~~~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~  154 (223)
T 2hqr_A           77 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG--SNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH  154 (223)
T ss_dssp             SCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCC--CCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHH
T ss_conf             67589999987539970787242202568999999972045--6621136533555306999899996058606788999


Q ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      |++|+|++|||++|.+.|||. +..+++|||++||+||||||+...+...|+||||.||+|..
T Consensus       155 L~~~~g~vvsr~~L~~~vw~~-~~~~~~~tld~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  216 (223)
T 2hqr_A          155 LARHRDQIVSKEQLLDAIWEE-PEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCY  216 (223)
T ss_dssp             HHHTCSEEEEHHHHHHHHCCS-SCSCGGGTHHHHHHHHHHHHHTTSSSCCEEECSSSEEEECC
T ss_pred             HHHCCCEEEEHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECEEEEECC
T ss_conf             987899278299998884188-77888677999999999985276999809998170368787


No 6  
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=100.00  E-value=0  Score=325.34  Aligned_cols=211  Identities=22%  Similarity=0.316  Sum_probs=189.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.++..|+..|+ |.++.+++++  +...+.||++++|+.+  |+++|+++++.+++ .+++|||++|+
T Consensus         5 ILiVdDd~~~~~~l~~~L~~~g~-v~~~~~~~ea--l~~~~~~DlvilD~~l--p~~~g~~~~~~~~~~~~~~~iiilt~   79 (220)
T 1p2f_A            5 IAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDF--LNDEEAFHVVVLDVML--PDYSGYEICRMIKETRPETWVILLTL   79 (220)
T ss_dssp             EEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHH--HHCCSCCSEEEEESBC--SSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCE-EEEECCHHHH--HHHCCCCCEEEEECCC--CCCCCCHHHHHHHHCCCCEEEEECCC
T ss_conf             99995989999999999986999-9998799999--9527899999997999--98886023332110244203430122


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL  160 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L  160 (223)
                      ..+.+++++++++|||||+.|||+++||.+||++++||.+  ....+.|++.+|...++++++|+.+.||++||+||++|
T Consensus        80 ~~~~~~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~r~~--~~~~~~~~~~ld~~~~~~~~~g~~v~LT~~E~~iL~~L  157 (220)
T 1p2f_A           80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK--KGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFL  157 (220)
T ss_dssp             CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC--CSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCC--CCCEECCCEEECCCCCEEEECCEEECCCHHHHHHHHHH
T ss_conf             3230036754414652224357320018999999983054--68354188378047629999998962899999999999


Q ss_pred             HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC
Q ss_conf             112883400899998652876577766136889999998601456-77715778686303138
Q gi|254780526|r  161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~  222 (223)
                      ++|+|++|||++|.+.+||.   ..++|||++||+||||||+..+ ...+|+||||.||+|+.
T Consensus       158 ~~~~g~vvsr~~l~~~vw~~---~~~~~tv~~~I~rLRkKL~~~~~~~~~I~tvrg~GY~~~~  217 (220)
T 1p2f_A          158 AENAGKVVTREKLLETFWED---PVSPRVVDTVIKRIRKAIEDDPNRPRYIKTIWGVGYMFTG  217 (220)
T ss_dssp             HHTTTSCEEHHHHHHHHCSS---CCCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECC
T ss_pred             HHCCCCEECHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECC
T ss_conf             84899678199998786078---8886679999999999730078999839997687869738


No 7  
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.96  E-value=5.4e-31  Score=214.33  Aligned_cols=190  Identities=17%  Similarity=0.250  Sum_probs=153.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++++...|+..||.|..+.+++++.......+||++++|+.  ||+++|+++++.+|+. +++|||++|+
T Consensus         7 ILIVDD~~~~r~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~pDlvllD~~--mp~~~G~~~l~~i~~~~~~~~iI~lt~   84 (208)
T 1yio_A            7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIVFITA   84 (208)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999949999999999999977998999799999999860469998998578--899765799999886056651798725


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32100001112220100010233333210000011122222221122222222222222222223321242101234432
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL  160 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L  160 (223)
                      +++.+...+++++||+||+.||++.+||.++|++.+++.........          ...........||++|.+++.++
T Consensus        85 ~~~~~~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~~~~~~~~----------~~~~~~~~~~~Lt~re~evl~ll  154 (208)
T 1yio_A           85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARE----------TQDQLEQLFSSLTGREQQVLQLT  154 (208)
T ss_dssp             CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             79999999999779998953899999999999999974013445555----------33210011232246899999999


Q ss_pred             HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             11288340089999865287657776613688999999860145677715778
Q gi|254780526|r  161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK  213 (223)
Q Consensus       161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tv  213 (223)
                      ++  |  .|..+|++.+      ..+.+||++|+++|++||+.....+.++.+
T Consensus       155 ~~--g--~~~~eIa~~l------~iS~~TV~~h~~~i~~KL~~~~~~elv~~~  197 (208)
T 1yio_A          155 IR--G--LMNKQIAGEL------GIAEVTVKVHRHNIMQKLNVRSLANLVHLV  197 (208)
T ss_dssp             TT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HC--C--CCHHHHHHHC------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             81--5--6499999972------876899999999999980999999999999


No 8  
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.96  E-value=8.5e-30  Score=206.78  Aligned_cols=192  Identities=18%  Similarity=0.199  Sum_probs=156.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECC
Q ss_conf             68970989999999999997898--8999828589999998289967999900789662179998631013-32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~l   78 (223)
                      |||||||+.+++++..+|+..+.  .|..+.+++++..+.....||++++|+.+  |+++|+++++.+++. +.+||+++
T Consensus         8 ILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~~~pdlvllD~~l--p~~~G~~~~~~~~~~~~~~~iivl   85 (215)
T 1a04_A            8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM--PGMNGLETLDKLREKSLSGRIVVF   85 (215)
T ss_dssp             EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTS--TTSCHHHHHHHHHHSCCCSEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999929899999999999858992899997999999999974699689996888--998986232101124566554344


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE  158 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~  158 (223)
                      |+.++.++.++++++||+||+.||++..++.++++++.++....+... ...+..+.........+....||+||+++|.
T Consensus        86 t~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LT~rE~~vl~  164 (215)
T 1a04_A           86 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEAL-TPVLAASLRANRATTERDVNQLTPRERDILK  164 (215)
T ss_dssp             ECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTT-HHHHHHHC-------CCCGGGSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             367999999999984998986025999999999999984887568567-6788888762445457870208989999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             321128834008999986528765777661368899999986014567
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      +|+++    .|..+|++.+      .++.+||++|++||++||+...-
T Consensus       165 ll~~g----~sn~~IA~~L------~iS~~TV~~h~~~i~~KL~v~~r  202 (215)
T 1a04_A          165 LIAQG----LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSR  202 (215)
T ss_dssp             HHHTT----CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHH----CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             99986----6312679997------88687999999999998099988


No 9  
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630}
Probab=99.93  E-value=2.2e-26  Score=185.29  Aligned_cols=118  Identities=23%  Similarity=0.267  Sum_probs=112.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.++..+...|++.||.|..+.+++++........||++++|+.|  |+++|+++|+.+|+.+++|||++|+.
T Consensus         7 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlillD~~m--P~~dG~el~~~~~~~~~~piI~lt~~   84 (136)
T 2qzj_A            7 ILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIIL--SDGDGWTLCKKIRNVTTCPIVYMTYI   84 (136)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEE--TTEEHHHHHHHHHTTCCCCEEEEESC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             9999899999999999999879999998999999998862799999977999--89986079999983699989999962


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2100001112220100010233333210000011122222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      ++.+++++++++||||||+|||++++|.++|++++||.+.
T Consensus        85 ~~~~~~~~al~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~~  124 (136)
T 2qzj_A           85 NEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS  124 (136)
T ss_dssp             CCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             8999999999869988998989999999999999997303


No 10 
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.93  E-value=2.6e-26  Score=184.86  Aligned_cols=117  Identities=21%  Similarity=0.308  Sum_probs=111.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++|+.+|+.+++|||++|+.
T Consensus         4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~m--p~~~G~~l~~~ir~~~~ipiI~lt~~   81 (121)
T 1zh2_A            4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL--PDGDGIEFIRDLRQWSAVPVIVLSAR   81 (121)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEE--TTEEHHHHHHHHHTTCCCCEEEEESC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999699999999999999879999998889999999971799999980999--99897999999997479909999785


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             210000111222010001023333321000001112222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      ++.+++++++++||||||+|||++++|.++|++++||.+
T Consensus        82 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~~  120 (121)
T 1zh2_A           82 SEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS  120 (121)
T ss_dssp             CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             999999999986999999799999999999999988757


No 11 
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.92  E-value=8.5e-26  Score=181.60  Aligned_cols=120  Identities=14%  Similarity=0.253  Sum_probs=109.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.|  |+++|+++|+.+|+.+   ++||||+
T Consensus        10 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l   87 (154)
T 3gt7_A           10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM--PEMDGYALCRWLKGQPDLRTIPVILL   87 (154)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9999799999999999999879999998999999999983899999980899--99988799999985845579959999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             443210000111222010001023333321000001112222222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN  123 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~  123 (223)
                      |++++.+++++++++||||||+|||++++|.++|++++++.+...
T Consensus        88 Ta~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~~~  132 (154)
T 3gt7_A           88 TILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTE  132 (154)
T ss_dssp             ECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCCCC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             826999999999977988799798999999999999999999999


No 12 
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.92  E-value=1.4e-25  Score=180.25  Aligned_cols=117  Identities=11%  Similarity=0.204  Sum_probs=108.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC
Q ss_conf             68970989999999999997898899-98285899999982899679999007896621799986310133210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|. .|.+++++..+.....||++++|+.  |||+||+++|+.+|+.+++||||+|+
T Consensus        16 ILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~--MP~mdGle~~~~ir~~~~~piiilTa   93 (205)
T 1s8n_A           16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKRIAPIVVLTA   93 (205)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9998298999999999999869979999899999999998379999999640--45860799999998569999899956


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.++.++|+++||+|||+|||++++|+++|+..+++..
T Consensus        94 ~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~  133 (205)
T 1s8n_A           94 FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  133 (205)
T ss_dssp             GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             7889999999982984214389999999999999998644


No 13 
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.92  E-value=6.6e-26  Score=182.30  Aligned_cols=115  Identities=16%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      ||||||++..+..+...|+..||.|..+.+++++..+.....||++++|+.|  |+|||+++|+.+|+.+   ++||||+
T Consensus         4 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdlvllD~~m--P~mdG~e~~~~ir~~~~~~~iPVI~l   81 (459)
T 1w25_A            4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMM--PGMDGFTVCRKLKDDPTTRHIPVVLI   81 (459)
T ss_dssp             EEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             9999598999999999999789899997999999999962799999997989--99999999999970867798968999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             4432100001112220100010233333210000011122
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      |++++.+++++++++||+|||+||+++++|++||++++|+
T Consensus        82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~rIr~llr~  121 (459)
T 1w25_A           82 TALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF  121 (459)
T ss_dssp             ECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCC
T ss_conf             8899989999998669857985584012001321133330


No 14 
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.92  E-value=1.7e-25  Score=179.76  Aligned_cols=117  Identities=22%  Similarity=0.318  Sum_probs=111.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++|+.+|+.+++|||++|++
T Consensus         5 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dliilD~~m--P~~dG~e~~~~~r~~~~~piI~lt~~   82 (122)
T 1zgz_A            5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINL--PDENGLMLTRALRERSTVGIILVTGR   82 (122)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHTTCCCEEEEEESS
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999499999999999999879999998999999999973999899997898--99772899999984799939999836


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             210000111222010001023333321000001112222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      ++.+++++++++|||||++|||++++|.++|++++||..
T Consensus        83 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~R~~  121 (122)
T 1zgz_A           83 SDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID  121 (122)
T ss_dssp             CCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             999999999986998999798999999999999998727


No 15 
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.92  E-value=1.1e-25  Score=180.91  Aligned_cols=117  Identities=25%  Similarity=0.289  Sum_probs=110.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.|  |+++|+++|++++..+++|||++|+.
T Consensus         4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD~~m--p~~dG~~~l~~~~~~~~~pvi~lt~~   81 (120)
T 2a9o_A            4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGLEVAKTIRKTSSVPILMLSAK   81 (120)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHHCCCCEEEEESC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999799999999999999889999998999999999985799899982999--99899999999886599819999798


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             210000111222010001023333321000001112222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      ++.+++++++++||+||+.|||++++|+++|++++||.+
T Consensus        82 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrr~~  120 (120)
T 2a9o_A           82 DSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ  120 (120)
T ss_dssp             CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             999999999987998999898999999999999997759


No 16 
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.92  E-value=1.7e-25  Score=179.66  Aligned_cols=117  Identities=24%  Similarity=0.419  Sum_probs=109.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++++.+|+. +++|||++|+
T Consensus         3 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~dG~e~~~~lr~~~~~~pii~lt~   80 (121)
T 2pl1_A            3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGL--PDEDGLSLIRRWRSNDVSLPILVLTA   80 (121)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf             9999689999999999999879999998999999999645899899988999--99874789999996399981899978


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.+++++++++||+|||.|||++++|+++|++++||..
T Consensus        81 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~  120 (121)
T 2pl1_A           81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS  120 (121)
T ss_dssp             CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             8999999999986999999798999999999999975746


No 17 
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.92  E-value=2.5e-25  Score=178.63  Aligned_cols=114  Identities=23%  Similarity=0.326  Sum_probs=106.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|.++.+++++..+....+||+++      ||++||+++|+++|+ .+.+|||++|+
T Consensus        21 ILvVEDd~~~~~~l~~~L~~~G~~v~~a~~g~~al~~l~~~~~Dlvi------Lp~~~G~ell~~ir~~~~~~piiilT~   94 (137)
T 2pln_A           21 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDKNALSFVSRIKEKHSSIVVLVSSD   94 (137)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECSTTHHHHHHHHHHHSTTSEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE------EECCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf             99995999999999999998899999989999999999728999999------827876379999996288997599964


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333-3210000011122222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKV  121 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~-~eL~ari~a~lRr~~~  121 (223)
                      +++.+++++++++||||||+|||.. +||++||++++||...
T Consensus        95 ~~~~~~~~~al~~Gaddyl~KPf~~~~eL~aRI~allRR~~~  136 (137)
T 2pln_A           95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGS  136 (137)
T ss_dssp             SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC----
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf             899999999998699889979999989999999999666589


No 18 
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=99.92  E-value=3.5e-25  Score=177.74  Aligned_cols=116  Identities=23%  Similarity=0.295  Sum_probs=110.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.|  |+++|+++++.+|+.+++|||++|+.
T Consensus         5 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~m--P~~~G~e~~~~~r~~~~~~ii~lt~~   82 (120)
T 3f6p_A            5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGVEVCREVRKKYDMPIIMLTAK   82 (120)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTS--TTTHHHHHHHHHHTTCCSCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999399999999999999889999998999999999971899999982999--99999999999981689958999767


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             21000011122201000102333332100000111222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      ++.+++.+++++||+||+.|||++++|+++|++++||.
T Consensus        83 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~lrR~  120 (120)
T 3f6p_A           83 DSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ  120 (120)
T ss_dssp             SCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             99999999997599989979999999999999997679


No 19 
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.91  E-value=7.9e-25  Score=175.51  Aligned_cols=119  Identities=19%  Similarity=0.247  Sum_probs=110.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECCCC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133-210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~lt~   80 (223)
                      |||||||+.++..+...|+..||.|..+.+++.+..+....+||++++|+.|  |+++|+++++.+|+.+ ..|||++|+
T Consensus         6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dlvl~D~~m--P~~~G~el~~~ir~~~~~~~ii~lT~   83 (136)
T 1mvo_A            6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGIEVCKQLRQQKLMFPILMLTA   83 (136)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             8999899999999999999889999998999999999884599899826999--99988999999985499985999978


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321000011122201000102333332100000111222222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS  122 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~  122 (223)
                      +++.+++++++++||+|||.|||++++|+++|++++||....
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~~  125 (136)
T 1mvo_A           84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIR  125 (136)
T ss_dssp             TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             799999999998699627889899999999999999887764


No 20 
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.91  E-value=6.2e-25  Score=176.15  Aligned_cols=117  Identities=18%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+  |+++|+++++.+|+.+++|+|++|+.
T Consensus         6 ILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~l--P~~~g~e~~~~~~~~~~~pii~lt~~   83 (123)
T 1xhf_A            6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL--PGKNGLLLARELREQANVALMFLTGR   83 (123)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             9999699999999999999879999998999999999970899999996899--98449999999985699978999935


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             210000111222010001023333321000001112222
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      ++.+++.+++++||+||+.|||+++||.++|++++||..
T Consensus        84 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~v~~~l~R~~  122 (123)
T 1xhf_A           84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM  122 (123)
T ss_dssp             CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             999999999984988888698999999999999987726


No 21 
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.91  E-value=7.7e-25  Score=175.57  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=108.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+   ||+++|+++++++|+ .+++|||++|+
T Consensus         7 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dlvllD~---mp~~dGl~l~~~ir~~~~~~piI~lT~   83 (142)
T 2qxy_A            7 VMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVAVLSA   83 (142)
T ss_dssp             EEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99998989999999999998799999989999999999857999998547---863128999999998689997899973


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.+++++++++||+|||+|||++++|.++|++++++..
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  123 (142)
T 2qxy_A           84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP  123 (142)
T ss_dssp             CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             5888999999976897899798999999999999985681


No 22 
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.91  E-value=1.3e-24  Score=174.24  Aligned_cols=119  Identities=15%  Similarity=0.193  Sum_probs=110.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.++.++........||++++|+.+  |+++|+++++.+|+ .+++|||++|+
T Consensus         6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvllD~~m--p~~~G~el~~~lr~~~~~~piI~lT~   83 (132)
T 3crn_A            6 ILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--PDMEGTELLEKAHKLRPGMKKIMVTG   83 (132)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--SSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999599999999999999869979970999999999985799999970448--99608999999998489998999976


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321000011122201000102333332100000111222222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS  122 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~  122 (223)
                      +++.+++++++++||+|||.|||++++|+++|++.++|.+..
T Consensus        84 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~L~~~~~e  125 (132)
T 3crn_A           84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKE  125 (132)
T ss_dssp             CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             599999999998799899989799999999999999999617


No 23 
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.91  E-value=2.1e-25  Score=179.18  Aligned_cols=194  Identities=24%  Similarity=0.282  Sum_probs=151.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-CE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             6897098999999999999789-88-99982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG-VS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g-~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
                      |||||||+.++.++...|+..+ +. |..+.+++++........||++++|+.+  |+++|+++++.+++ .+++|||++
T Consensus         4 IlivdD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pdlvl~d~~l--~~~~g~~~~~~l~~~~~~~~vi~~   81 (225)
T 3c3w_A            4 VFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRL--PDGNGIELCRDLLSRMPDLRCLIL   81 (225)
T ss_dssp             EEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEE--TTEEHHHHHHHHHHHCTTCEEEEG
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             999969899999999999858994899997999999999986599899982778--998615898875302899857863


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE  158 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~  158 (223)
                      |+..+.....+++++||++|+.||++.+++...++++.++....+........  .............-.||+||.++|.
T Consensus        82 t~~~~~~~~~~al~~Ga~~~l~K~~~~~~l~~~i~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LT~RE~eVL~  159 (225)
T 3c3w_A           82 TSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALM--AKLRGAAEKQDPLSGLTDQERTLLG  159 (225)
T ss_dssp             GGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHH--HHHHHHHHHSCTTTTSCHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             15665789999998498877406777999999999998699768978999999--8864023336755679999999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             321128834008999986528765777661368899999986014567771
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP  209 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~  209 (223)
                      ++++  |  .|..+|++.+      .++.+||++|++++++||+.....+.
T Consensus       160 ll~~--G--~snkeIA~~L------~iS~~TVk~h~~~I~~KLgv~nr~ea  200 (225)
T 3c3w_A          160 LLSE--G--LTNKQIADRM------FLAEKTVKNYVSRLLAKLGMERRTQA  200 (225)
T ss_dssp             HHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCCSSCHH
T ss_pred             HHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             9993--8--9888999997------88799999999999999689999999


No 24 
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.90  E-value=1.4e-24  Score=173.99  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC
Q ss_conf             68970989999999999997898899982858999999828-9967999900789662179998631013---3210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~-~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~   77 (223)
                      ||+|||++..+..+...|+..||.|..+.++.++....... .||++++|+  .||++||+++|+.+|+.   .++|||+
T Consensus       127 VLvVDD~~~~~~~i~~~L~~~g~~v~~a~~g~eal~~l~~~~~~DlIllD~--~MP~~dG~e~~~~iR~~~~~~~iPII~  204 (259)
T 3luf_A          127 VLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDY--YMPEIDGISLVRMLRERYSKQQLAIIG  204 (259)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECS--CCSSSCHHHHHHHHHHHCCTTTSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf             787538889999999999834662453240568999984489965999647--776754899999998378899994999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             24432100001112220100010233333210000011122222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +|++++++++.+++++||||||+|||+++||.+||++.++|.+.
T Consensus       205 lTa~~~~~~~~~~~~~Ga~d~l~KP~~~~eL~~~i~~~L~~~~~  248 (259)
T 3luf_A          205 ISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ  248 (259)
T ss_dssp             EECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             98999989999999879999998989999999999999999999


No 25 
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.90  E-value=1.5e-24  Score=173.73  Aligned_cols=119  Identities=16%  Similarity=0.326  Sum_probs=110.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.+  |+++|+++|+++|+.   +++||||+
T Consensus         5 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~~G~~l~~~ir~~~~~~~~piI~l   82 (127)
T 2jba_A            5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWML--PGGSGIQFIKHLRRESMTRDIPVVML   82 (127)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEE--TTEEHHHHHHHHHTSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999799999999999999879999998999999999971799999981889--99628999999984787799909999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS  122 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~  122 (223)
                      |++++.+++.+++++||+||++|||++.+|.++|++++||..+.
T Consensus        83 s~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~~p~  126 (127)
T 2jba_A           83 TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPM  126 (127)
T ss_dssp             EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCCCC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             89899999999998498587719999999999999998152548


No 26 
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.90  E-value=3.2e-24  Score=171.66  Aligned_cols=119  Identities=13%  Similarity=0.164  Sum_probs=107.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|.++.+++++..+.....++++++++|+.||+++|+++++.+++ .+.+|||++|+
T Consensus         6 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~~~dlvilD~~mp~~~G~~l~~~~~~~~~~~pvI~lT~   85 (143)
T 3jte_A            6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG   85 (143)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99996999999999999998799999978899999999845999739997477777788999999998789996999988


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.+..++++++||+|||.|||++++|.++|+..++|.+
T Consensus        86 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  125 (143)
T 3jte_A           86 HGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK  125 (143)
T ss_dssp             TTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             8999999999986998998289999999999999999999


No 27 
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.90  E-value=7.2e-24  Score=169.46  Aligned_cols=116  Identities=14%  Similarity=0.181  Sum_probs=107.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.|  |+++|+++|+.+|+.   +++|||++
T Consensus        10 VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~m--P~~~G~el~~~ir~~~~~~~ipiI~l   87 (142)
T 3cg4_A           10 VMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PGMDGWDTIRAILDNSLEQGIAIVML   87 (142)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SSSCHHHHHHHHHHTTCCTTEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9999798999999999999879999998999999999971799999983899--99868999999985755689959999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |+.++.+.+.+++++||+||++|||++++|+++++.++++.
T Consensus        88 T~~~~~~~~~~a~~~G~~dyl~KP~~~~~Ll~~v~~~l~~~  128 (142)
T 3cg4_A           88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV  128 (142)
T ss_dssp             ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             78899999999998699889989899999999999999988


No 28 
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=99.90  E-value=3.3e-24  Score=171.59  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=108.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHC-CCCCCEEC
Q ss_conf             689709899999999999978988999828589999998289967999900789---66217999863101-33210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRA-HSQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~-~~~~pII~   77 (223)
                      |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.||.   +|++|+++++.+|+ .+++|||+
T Consensus         6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~~~~ipvI~   85 (140)
T 2qr3_A            6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVL   85 (140)
T ss_dssp             EEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             99997999999999999997899999989999999999727999999916887777677519999999998689982899


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             244321000011122201000102333332100000111222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      +|++++.+++++++++||+|||+|||+.++|+++|...+++.
T Consensus        86 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~al~~~  127 (140)
T 2qr3_A           86 FTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA  127 (140)
T ss_dssp             EEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             978999999999998699789979899999999999999970


No 29 
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.90  E-value=2.6e-24  Score=172.24  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.++..+...|+..||.|..+.++..+........||++++|+.  ||++||+++++.+|+ .+++||||+|+
T Consensus         6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilD~~--mP~~dGle~~~~ir~~~~~~pvI~lT~   83 (155)
T 1qkk_A            6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIR--MPGMDGLALFRKILALDPDLPMILVTG   83 (155)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESC--CSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCC--CCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             999959999999999999987998999789999999853269877765457--899989999999997298994898979


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +++.+..++++++||+|||.|||++++|..+|+..+++
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~  121 (155)
T 1qkk_A           84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK  121 (155)
T ss_dssp             GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             89999999999869988975999999999999999999


No 30 
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.90  E-value=4.7e-24  Score=170.60  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=107.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             6897098999999999999789889-9982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      ||||||++.+++.+...|+..||.| ..|.+++++........|+++++++|+.||++||+++++.+|+ .+++||||+|
T Consensus        39 ILiVDD~~~~~~~l~~~L~~~g~~vv~~a~~g~eAl~~~~~~~p~~dlvilD~~mP~~dG~e~~~~ir~~~~~~piI~lT  118 (157)
T 3hzh_A           39 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMIS  118 (157)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99996999999999999998799899998999999999984198918999856899997899999999719999768763


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             432100001112220100010233333210000011122
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      ++++.+.+.+++++||+||+.|||+.++|+++|+++++|
T Consensus       119 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r  157 (157)
T 3hzh_A          119 ALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK  157 (157)
T ss_dssp             SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             279999999999859988997989999999999999678


No 31 
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.89  E-value=1.8e-23  Score=166.91  Aligned_cols=119  Identities=12%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC
Q ss_conf             689709899999999999978988999828589999-9982899679999007896621799986310133210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~   80 (223)
                      |||||||+..+..+...|+..||.|..+.+++++.. +.....||++++|+.|| +|++|+++++.+|+.+++|||++|+
T Consensus         8 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp-~g~dG~e~~~~ir~~~~~PvI~lT~   86 (140)
T 3h5i_A            8 ILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELG-EGMDGVQTALAIQQISELPVVFLTA   86 (140)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCS-SSCCHHHHHHHHHHHCCCCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             999959899999999999987999999898999999998469998999726653-3578999999998569998999989


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +++.+++.+++++||+||++|||++++|+++|+..+|+.+.
T Consensus        87 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~  127 (140)
T 3h5i_A           87 HTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA  127 (140)
T ss_dssp             SSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999879998998989999999999999999887


No 32 
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=99.89  E-value=1.1e-23  Score=168.20  Aligned_cols=114  Identities=12%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      ||+|||++.+++.+...|+..||.|..+.++.++.......+||++++|+.  ||+++|+++|+.+|+.+   ++|||++
T Consensus         5 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~~--mP~~~G~el~~~ir~~~~~~~iPiI~l   82 (122)
T 3gl9_A            5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPVIVL   82 (122)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             999969999999999999987999999899999999998379999985102--899988999999983887899989998


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             443210000111222010001023333321000001112
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      |++++.+++.+++++||+||++|||++++|+++|++++.
T Consensus        83 T~~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~v~~~L~  121 (122)
T 3gl9_A           83 TAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN  121 (122)
T ss_dssp             ESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             279999999999987998899798999999999999858


No 33 
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.89  E-value=2.4e-23  Score=166.19  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=109.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      |||||||+..++.+...|+..||.|..+.+++++.......+||++++|+.|  |++||+++++.+|+.+   ++|||++
T Consensus         6 ILIVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~ipvI~l   83 (138)
T 3c3m_A            6 ILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMM--EPMDGWETLERIKTDPATRDIPVLML   83 (138)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999799999999999999879999998999999999753899899970678--99988999999984865589987998


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4432100001112220100010233333210000011122222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      |+.++..++.+++++||+||++|||++++|.++++++++|...
T Consensus        84 s~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~l~~~l~r~~~  126 (138)
T 3c3m_A           84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHS  126 (138)
T ss_dssp             ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC--
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             6379899999998679988998989999999999999996520


No 34 
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=99.89  E-value=4.7e-24  Score=170.61  Aligned_cols=117  Identities=15%  Similarity=0.252  Sum_probs=108.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      ||||||++..+..+...|+..||.|..+.++.++..+.....||++++|+.|  |++||+++++.+|+.+   ++|||++
T Consensus        11 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l   88 (147)
T 2zay_A           11 IMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKISGMDLFNSLKKNPQTASIPVIAL   88 (147)
T ss_dssp             EEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999799999999999999879999998999999999983799999985999--99975189999984855689718997


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             443210000111222010001023333321000001112222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      |+.++.+++.+++++||+|||+|||++++|+++|++++|+..
T Consensus        89 S~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  130 (147)
T 2zay_A           89 SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY  130 (147)
T ss_dssp             ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             268999999999987998899799999999999999999874


No 35 
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.89  E-value=1.4e-23  Score=167.56  Aligned_cols=117  Identities=17%  Similarity=0.230  Sum_probs=109.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+..+..+...|+..||.|..+.+++++........||++++|+.|  |++||+++++.+|+. +++|||++|+
T Consensus       132 iLvvdD~~~~~~~l~~~L~~~g~~v~~a~~g~~Al~~~~~~~~dlil~D~~m--P~mdG~e~~~~ir~~~~~~pii~lta  209 (254)
T 2ayx_A          132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNM--PNMDGYRLTQRIRQLGLTLPVIGVTA  209 (254)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESS--CSSCCHHHHHHHHHHHCCSCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999098999999999999879999998999999999984799899995036--89983899999996299997999989


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +.+.+++.+++++|+||||.|||++++|.++++..++|.+
T Consensus       210 ~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~r~r  249 (254)
T 2ayx_A          210 NALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR  249 (254)
T ss_dssp             STTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999999986998999798999999999999999999


No 36 
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.89  E-value=2.3e-23  Score=166.29  Aligned_cols=116  Identities=12%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      |||||||+.++..+...|+..||.|..+.+++++........||++++|+.+| ++++|+++|+++|+.+   ++|||++
T Consensus         8 ILvVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~pdliilD~~lp-~~~~G~~l~~~ir~~~~~~~iPii~l   86 (127)
T 2gkg_A            8 ILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLS-AGQNGYLICGKLKKDDDLKNVPIVII   86 (127)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCG-GGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             99998999999999999998799999989999999999847999999975777-68889999999983888899838999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |+.++. ++.+++++|||||++|||++++|+++|++++++.
T Consensus        87 t~~~~~-~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L~~p  126 (127)
T 2gkg_A           87 GNPDGF-AQHRKLKAHADEYVAKPVDADQLVERAGALIGFP  126 (127)
T ss_dssp             ECGGGH-HHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred             ECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             689859-9999998699899989899999999999987799


No 37 
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=99.89  E-value=3.1e-23  Score=165.46  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--CCCEECCC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133--21000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~--~~pII~lt   79 (223)
                      |||||||+.++..+...|+..||.|..+.++.++........||++++|+.|  |++||+++|+++|+.+  +.|+|+++
T Consensus         9 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD~~m--P~~dG~el~~~ir~~~~~~~~~Iil~   86 (132)
T 3lte_A            9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSM--PKLDGLDVIRSLRQNKVANQPKILVV   86 (132)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCB--TTBCHHHHHHHHHTTTCSSCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999799999999999999889999998899999999974799999996898--78889999999984588898918999


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             432100001112220100010233333210000011122222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +..+.+++.+++++||+||++|||++++|+++|+++++|...
T Consensus        87 s~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ll~~G~~  128 (132)
T 3lte_A           87 SGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH  128 (132)
T ss_dssp             CCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             559999999999879989998989999999999999957898


No 38 
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A
Probab=99.89  E-value=1.7e-23  Score=167.05  Aligned_cols=100  Identities=20%  Similarity=0.280  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22112222222222222222222332124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      .++.+++|++.+|+..++++++|+.+.||++||.||.+|++|+|+++||++|++.+||. +...++++|++||+|||+||
T Consensus         5 ~~~~i~~~~l~lD~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vw~~-~~~~~~~~l~~~I~rLRkkl   83 (106)
T 1gxq_A            5 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVHIRRLRKAL   83 (106)
T ss_dssp             TTCCEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCS-SSCCCTHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf             25779999999986789999999998759999999999986767677699999987387-76899877999999999985


Q ss_pred             CCCCCCCCEEEECCCCEEECC
Q ss_conf             145677715778686303138
Q gi|254780526|r  202 RNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       202 ~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      +..+....|+|+||.||+|+.
T Consensus        84 ~~~~~~~~I~Tvrg~GY~l~~  104 (106)
T 1gxq_A           84 EPGGHDRMVQTVRGTGYRFST  104 (106)
T ss_dssp             GGGTGGGGEEEETTTEEEECS
T ss_pred             HCCCCCCCEEEECCCCEEEEE
T ss_conf             125999829997680066832


No 39 
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.88  E-value=3.4e-23  Score=165.20  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=105.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++++.+|+ .+++|||++|+
T Consensus         6 ILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~m--P~~~G~~ll~~ir~~~~~~pvI~lT~   83 (126)
T 1dbw_A            6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRM--PDMSGVELLRNLGDLKINIPSIVITG   83 (126)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCS--TTSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEECCCCC--CCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9999699999999999999879999998999999999763799879710368--88882999999996199983999968


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +++.+.+++++++||+||+.|||++++|..+|+..+++
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~  121 (126)
T 1dbw_A           84 HGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (126)
T ss_dssp             TTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             89999999999879988998969999999999999999


No 40 
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.88  E-value=8.3e-24  Score=169.07  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=109.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.++..+...|+..||.|..+.+++++..+.....||++++|+.+  |+++|+++++.+|+. +++|||++|+
T Consensus         7 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~pdlillD~~m--p~~~G~~l~~~ir~~~~~~piI~lt~   84 (137)
T 3cfy_A            7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKL--PDMSGEDVLDWINQNDIPTSVIIATA   84 (137)
T ss_dssp             EEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBC--SSSBHHHHHHHHHHTTCCCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999799999999999999879999998999999999984799999983899--99988999999997489984899987


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +++.++.++++++||+||+.|||++++|.++|+..++|.+.
T Consensus        85 ~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l  125 (137)
T 3cfy_A           85 HGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL  125 (137)
T ss_dssp             SCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             79999999998679868998989999999999999999889


No 41 
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.88  E-value=3.7e-23  Score=164.99  Aligned_cols=119  Identities=14%  Similarity=0.149  Sum_probs=105.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      |||||||+.+++.+...|+ .||.|..+.++.++........||++++|+.|  |+++|+++|+.+|+.+   ++|||++
T Consensus         7 ILiVDD~~~~r~~l~~~L~-~~~~v~~a~~g~eal~~l~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l   83 (133)
T 3nhm_A            7 VLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DGMDGYALCGHFRSEPTLKHIPVIFV   83 (133)
T ss_dssp             EEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999498999999999997-89989998999999999984799999975999--99999999999982888899878997


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4432100001112220100010233333210000011122222221
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN  124 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~  124 (223)
                      |+.++. ....++++||||||.|||++++|+++|+++++|.+....
T Consensus        84 T~~~~~-~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~l~r~~~eG~  128 (133)
T 3nhm_A           84 SGYAPR-TEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAEGH  128 (133)
T ss_dssp             ESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC----
T ss_pred             ECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             078849-999998779978998999999999999999988970699


No 42 
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=99.88  E-value=2.9e-23  Score=165.60  Aligned_cols=101  Identities=21%  Similarity=0.387  Sum_probs=92.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22112222222222222222222332124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      .++.+.+|++.+|+..+++..+|+.+.||++||.||.+|++|+|++|||++|++.+||. +...++++|++||+|||+||
T Consensus        10 ~~~~i~~g~l~id~~~~~v~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL   88 (120)
T 2z9m_A           10 VTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGY-DYFGDVRTVDVTIRRLREKI   88 (120)
T ss_dssp             --CCEEETTEEEEGGGTEEEETTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCT-TCCSCTHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHCCCC-CCCCCCCEEHHHHHHHHHHH
T ss_conf             99849994899988889999999999769999999999997899637568966650377-77898877035899999997


Q ss_pred             CCCC-CCCCEEEECCCCEEECCC
Q ss_conf             1456-777157786863031388
Q gi|254780526|r  202 RNKL-GFDPVDSKRFLGYSIDWN  223 (223)
Q Consensus       202 ~~~~-~~~~I~tvrg~GY~l~~n  223 (223)
                      +..+ ...+|+||||.||+|+.+
T Consensus        89 ~~~~~~~~~I~Tvrg~GY~L~~~  111 (120)
T 2z9m_A           89 EDDPSHPEYIVTRRGVGYFLQQH  111 (120)
T ss_dssp             CSSTTSCSSEEEETTTEEEECCC
T ss_pred             HHCCCCCCEEEEECCEEEEEECC
T ss_conf             50789998499938972887468


No 43 
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.88  E-value=4.1e-23  Score=164.70  Aligned_cols=115  Identities=15%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      ||||||++.++..+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++++.+|+. +++|||++|+
T Consensus         6 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dliilD~~m--P~~~G~el~~~ir~~~~~~pii~lt~   83 (124)
T 1srr_A            6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKI--PGMDGIEILKRMKVIDENIRVIIMTA   83 (124)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC--TTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999799999999999999869989995998999999980799889985369--99988999999996099998999988


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +++.+...+++++||+||++|||++++|..+++..+++
T Consensus        84 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~L~~  121 (124)
T 1srr_A           84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL  121 (124)
T ss_dssp             SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             89999999999879989998989999999999999875


No 44 
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=99.88  E-value=2.3e-23  Score=166.24  Aligned_cols=99  Identities=19%  Similarity=0.311  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             21122222222222222222223321242101234432112883400899998652876577766136889999998601
Q gi|254780526|r  123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR  202 (223)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~  202 (223)
                      +..+++|++++|...++++++|+.+.||++||.||.+|++++|++|||++|++.+||. +...++++|++||+|||+||+
T Consensus         3 ~~i~~~gdl~lD~~~r~~~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkL~   81 (112)
T 2jzy_A            3 ATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM-NFDSDTNVIDVAVRRLRSKID   81 (112)
T ss_dssp             CCCEEETTEEECTTTCCEEETTEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCC-CSSCSTTHHHHHHHHHHTTTT
T ss_pred             CCEEEEECEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHC
T ss_conf             8638994799986899999999998659999999999984889874399999861488-756541129999999999856


Q ss_pred             CCCCCCCEEEECCCCEEECC
Q ss_conf             45677715778686303138
Q gi|254780526|r  203 NKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       203 ~~~~~~~I~tvrg~GY~l~~  222 (223)
                      +.+.+.+|+|+||.||+|+.
T Consensus        82 ~~~~~~~I~Tvrg~GY~l~v  101 (112)
T 2jzy_A           82 DDFEPKLIHTVRGAGYVLEI  101 (112)
T ss_dssp             TTSSCCCEECCTTTCBEECC
T ss_pred             CCCCCCEEEEECCCCEEEEC
T ss_conf             75899839996882479840


No 45 
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=99.88  E-value=6.2e-23  Score=163.56  Aligned_cols=118  Identities=11%  Similarity=0.157  Sum_probs=107.5

Q ss_pred             EEEECCCHHHHHHHHHHHHH--CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEE
Q ss_conf             68970989999999999997--8988999828589999998289967999900789662179998631013---321000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGD--DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~--~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII   76 (223)
                      |||||||+..++.+...|+.  .|+.|..+.++.++..+....+||++++|+.|  |++||+++++.+|+.   +++|||
T Consensus        11 ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~~~pDlillD~~m--P~~dG~el~~~ir~~~~~~~ipvI   88 (143)
T 3cnb_A           11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKSTPATANIIVI   88 (143)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf             999919999999999999827898089998999999999972799999980888--999869999999847888998499


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             024432100001112220100010233333210000011122222
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      ++|+.++.+++.+++++||+|||.|||++++|.++|+.+++|.+.
T Consensus        89 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~  133 (143)
T 3cnb_A           89 AMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA  133 (143)
T ss_dssp             EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHH
T ss_conf             998489989999999769989998989999999999999971576


No 46 
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440}
Probab=99.88  E-value=3.9e-23  Score=164.86  Aligned_cols=119  Identities=22%  Similarity=0.310  Sum_probs=103.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEECC
Q ss_conf             68970989999999999997898899982858999-9998289967999900789662179998631013--32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~-~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~pII~l   78 (223)
                      |||||||+.+++.+...|+..||.+..+.+++++. .+....+||++++|+  .||+++|+++++.+|+.  +++|||++
T Consensus        10 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~--~mP~~~G~el~~~ir~~~~~~~piI~l   87 (136)
T 3hdv_A           10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDL--RMQPESGLDLIRTIRASERAALSIIVV   87 (136)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECS--CCSSSCHHHHHHHHHTSTTTTCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             999979999999999999987999999899999999997579998899879--899998999999999557999919999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS  122 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~  122 (223)
                      |++++.+++.+++++||+|||.|||++++|..+|+..+|+.++-
T Consensus        88 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~L~~~eG~  131 (136)
T 3hdv_A           88 SGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH  131 (136)
T ss_dssp             ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             88899999999998699989989899999999999999981799


No 47 
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.88  E-value=4.8e-23  Score=164.29  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=106.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|.++.+++++.......+||++++|+.|  |++||+++++.+|+. +++|||++|+
T Consensus        10 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~m--P~~dG~~~~~~ir~~~~~~piI~lt~   87 (130)
T 3eod_A           10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM--PRMNGLKLLEHIRNRGDQTPVLVISA   87 (130)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTCCCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999698999999999999889999998999999999852898874574217--99989999999996098998999989


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf             321000011122201000102333-332100000111222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL  119 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~-~~eL~ari~a~lRr~  119 (223)
                      +++.+++.+++++||+||+.|||. .++|..++++.+++.
T Consensus        88 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~~L~~~i~~~L~~~  127 (130)
T 3eod_A           88 TENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS  127 (130)
T ss_dssp             CCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999986998899799997999999999985176


No 48 
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.88  E-value=7.6e-23  Score=163.02  Aligned_cols=117  Identities=13%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      ||||||++..++.+...|+..||.|..+.+++++..+.....||++++|+.|  |+++|+++++.+|+.   +++|||++
T Consensus         4 iLiVdD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD~~m--p~~~G~el~~~ir~~~~~~~iPii~l   81 (124)
T 1mb3_A            4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQL--PEISGLEVTKWLKEDDDLAHIPVVAV   81 (124)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBC--SSSBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999589999999999999879999998999999999983799999978999--99847999999982887799968999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             443210000111222010001023333321000001112222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      |+.++.+++.+++++||+||++||+++.+|+.+++.+++|..
T Consensus        82 s~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~r~p  123 (124)
T 1mb3_A           82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQP  123 (124)
T ss_dssp             C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCCC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             898998999999977998999898999999999999983399


No 49 
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=99.88  E-value=7.2e-23  Score=163.16  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=103.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCC-CCHHHHHHHHHHCCCCCCEECCC
Q ss_conf             68970989999999999997898899-98285899999982899679999007896-62179998631013321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~-~~~g~~l~~~lr~~~~~pII~lt   79 (223)
                      |||||||+..+..+...|+..||.|. ++.+++++..+....+||++++|+.|  | ++||+++++.+|+.+++|||++|
T Consensus       163 ILiVdD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a~~~~~~~~~Dlil~Di~m--p~~mdG~~~~~~ir~~~~~piI~lT  240 (286)
T 3n0r_A          163 VLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQL--ADGSSGIDAVKDILGRMDVPVIFIT  240 (286)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCC--TTSCCTTTTTHHHHHHTTCCEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             99988879999999999997699748861328999999751799889981788--7898899999999866998389995


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             4321000011122201000102333332100000111222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      ++.  +++.+++++|+||||.|||++++|.++|+..+++.
T Consensus       241 a~~--~~~~~~~~~g~~~yl~KP~~~~~L~~~i~~aL~~~  278 (286)
T 3n0r_A          241 AFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH  278 (286)
T ss_dssp             SCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred             CCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             688--89999998699989989899999999999999854


No 50 
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.88  E-value=2.4e-22  Score=159.87  Aligned_cols=111  Identities=17%  Similarity=0.241  Sum_probs=100.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++++++|+ .+++|||++|+
T Consensus         4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvilD~~m--P~~~G~e~~~~ir~~~~~~pii~lt~   81 (116)
T 3a10_A            4 ILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM--PGISGLEVAGEIRKKKKDAKIILLTA   81 (116)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             9999299999999999999879999998999999999984799989983688--99999999999984399897999989


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             321000011122201000102333332100000111
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
                      +++.++  ++..+||+||+.|||++++|.+++++++
T Consensus        82 ~~~~~~--~~~~~Ga~~~l~KP~~~~~L~~~v~~~L  115 (116)
T 3a10_A           82 YSHYRS--DMSSWAADEYVVKSFNFDELKEKVKKLL  115 (116)
T ss_dssp             CGGGGG--CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred             CCCHHH--HHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             789999--9982699889989899999999999974


No 51 
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.88  E-value=9.7e-23  Score=162.33  Aligned_cols=114  Identities=11%  Similarity=0.159  Sum_probs=104.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             68970989999999999997898899-982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      |||||||+.+++.+...|+..||.|. .+.+++++..+....+||++++|+.  ||++||+++++++|+ .+++|||++|
T Consensus         5 ILiVDD~~~~r~~l~~~L~~~g~~v~~~a~~g~~al~~~~~~~~dlii~D~~--mP~~~G~e~~~~ir~~~~~~~ii~lt   82 (120)
T 1tmy_A            5 VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKIIVCS   82 (120)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999199999999999999879989999899999999998369999999636--89997999999999758799789997


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             43210000111222010001023333321000001112
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      ++++.+...+++++||+|||.|||++++|+.+++.+.|
T Consensus        83 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v~r  120 (120)
T 1tmy_A           83 AMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK  120 (120)
T ss_dssp             CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf             42899999999986998999798999999999999709


No 52 
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.88  E-value=5.4e-23  Score=163.94  Aligned_cols=121  Identities=14%  Similarity=0.157  Sum_probs=109.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC
Q ss_conf             68970989999999999997898899-98285899999982899679999007896621799986310133210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~   80 (223)
                      |||||||+.++..+...|++.||.|. .+.+++++..+.....||++++|+.+| ++++|+++++.+|+.+++|||++|+
T Consensus        12 ILvVDD~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~mp-~~~dG~~l~~~lr~~~~~piI~lt~   90 (140)
T 3cg0_A           12 VLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLC-GALDGVETAARLAAGCNLPIIFITS   90 (140)
T ss_dssp             EEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCC-SSSCHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             999979999999999999987998999978999999999827998899976787-6798999999998579996899966


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112222222
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN  123 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~  123 (223)
                      .++.+++.+++++||+|||.|||++++|.++|+..++|.+...
T Consensus        91 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ee  133 (140)
T 3cg0_A           91 SQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEE  133 (140)
T ss_dssp             CCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             8999999999987999899798999999999999999999965


No 53 
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.88  E-value=6.2e-23  Score=163.56  Aligned_cols=115  Identities=14%  Similarity=0.242  Sum_probs=106.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.++.++........||++++|+.|  |+++|+++++.+|+ .+++|||++|+
T Consensus         3 ILIVDDd~~i~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlvllDl~m--P~~dGlell~~ir~~~p~~pVIvlT~   80 (368)
T 3dzd_A            3 VLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWM--PDGDGVNFIDFIKENSPDSVVIVITG   80 (368)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEE--TTEETTTHHHHHHHHCTTCEEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9999289999999999999779989997999999999871799999997989--99999999999996399875445567


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233333210000011122
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +++.+..++++++||+||+.|||++++|..+|+..+++
T Consensus        81 ~~~~~~av~Al~~GA~Dyl~KP~~~~~L~~~I~~ale~  118 (368)
T 3dzd_A           81 HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE  118 (368)
T ss_dssp             SSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             79999999999748763205885379999999999999


No 54 
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.87  E-value=6.9e-23  Score=163.26  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=107.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.|  |+++|+++++.+|+ .+++|||++|+
T Consensus        17 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvi~D~~m--P~~~G~ell~~ir~~~~~~piI~lT~   94 (153)
T 3hv2_A           17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQMDGPTLLARIHQQYPSTTRILLTG   94 (153)
T ss_dssp             EEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999799999999999999879999998999999999872799999983678--89988999999998689996899979


Q ss_pred             CCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             321000011122201-0001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~~GA-ddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.+..+++++.|| +|||.|||++++|..+|+..+++..
T Consensus        95 ~~~~~~~~~a~~~Gav~~yl~KP~~~~~L~~~i~~~l~~~~  135 (153)
T 3hv2_A           95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH  135 (153)
T ss_dssp             CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999779988778898999999999999999999


No 55 
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=99.87  E-value=5.9e-23  Score=163.71  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=105.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+..++.+...|+..|+.|..+.+++++..+.....||++++|+.|  |++||+++++++|+. +++|||++|+
T Consensus        10 VLiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~m--P~~dG~el~~~ir~~~~~~piI~lT~   87 (137)
T 3hdg_A           10 ILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKLGGLEMLDRIKAGGAKPYVIVISA   87 (137)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999588999999999999679999998999999999874799899973789--99989999999995098995899989


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      +++.+...+++++||+|||+||+++++|.++|+.+.+
T Consensus        88 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~  124 (137)
T 3hdg_A           88 FSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH  124 (137)
T ss_dssp             CCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             8999999999986998999798999999999999998


No 56 
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583}
Probab=99.87  E-value=6.5e-23  Score=163.43  Aligned_cols=101  Identities=20%  Similarity=0.354  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             22211222222222222222222233212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +.+..+.+|++.+|+.+++++++|+.+.||++||.||.+|++|+|++|||++|++.+||. +...++++|++||+|||+|
T Consensus        16 ~~~~~i~~G~l~ld~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vWg~-~~~~~~~sl~~~I~rLRkK   94 (121)
T 2hwv_A           16 PRGSHMTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWGY-DYFGDVRTVDVTVRRLREK   94 (121)
T ss_dssp             ---CCEEETTEEECSSSSEEEETTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCG-GGTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCEEEEHHHHHHHHH
T ss_conf             999989990999987889999999998769999999999987889988999999997198-7667850785699999998


Q ss_pred             CCCCCC-CCCEEEECCCCEEECC
Q ss_conf             014567-7715778686303138
Q gi|254780526|r  201 LRNKLG-FDPVDSKRFLGYSIDW  222 (223)
Q Consensus       201 L~~~~~-~~~I~tvrg~GY~l~~  222 (223)
                      |+..+. ..+|+|+||+||+|+.
T Consensus        95 l~~~~~~~~~I~Tvrg~GY~l~~  117 (121)
T 2hwv_A           95 IEDSPSHPTYLVTRRGVGYYLRN  117 (121)
T ss_dssp             HCSSTTSCSSEEEETTTEEEECC
T ss_pred             HHHCCCCCCEEEEECCEEEEECC
T ss_conf             76168999869997783368569


No 57 
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.87  E-value=7e-23  Score=163.25  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.++..+...|+ .||.|..+.+++++..+.....||++++|+.  ||+++|+++++.+|+ .+++|+|++|+
T Consensus         4 ILiVDDd~~~~~~l~~~L~-~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~--mP~~~G~ell~~ir~~~~~~~vI~lt~   80 (139)
T 2jk1_A            4 ILLVDDEPHSLAAMKLALE-DDFDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPETVRIIITG   80 (139)
T ss_dssp             EEEECSSHHHHHHHHHHHT-TTSCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTTSEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999499999999999998-7999999899999999997289999998556--789855999999998189995899989


Q ss_pred             CCCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             321000011122-2010001023333321000001112222
Q gi|254780526|r   81 YPSLQTTLDFFD-SGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        81 ~~~~~~~i~~l~-~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +++.++.++++. +||+|||+|||++++|.++++..+++..
T Consensus        81 ~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~v~~~~~~~~  121 (139)
T 2jk1_A           81 YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT  121 (139)
T ss_dssp             CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             79989999999985998089899999999999999999999


No 58 
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.87  E-value=3e-23  Score=165.54  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=104.9

Q ss_pred             EEEECCCHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC
Q ss_conf             68970989999999999997-8988999828589999998289967999900789662179998631013---3210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~   77 (223)
                      ||||||++.++..+...|.. .||.|..+.++.++..+....+||++++|+.|  |++||+++|+.+|+.   .++|||+
T Consensus        21 ILiVDD~~~~~~~l~~~L~~~~g~~v~~a~~g~eal~~~~~~~pDlvllD~~m--P~~dGlel~~~iR~~~~~~~~pii~   98 (358)
T 3bre_A           21 VLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVM--PGVDGLTLLAAYRGNPATRDIPIIV   98 (358)
T ss_dssp             EEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBC--SSSBHHHHHHHHTTSTTTTTSCEEE
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf             99995999999999999853488399998999999999984499999980888--9999999999997364557962999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             2443210000111222010001023333321000001112
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      +|++++.+.+.+++++||+|||.|||++.|+.++++..++
T Consensus        99 lt~~~d~~~~~~al~~Ga~Dfl~KP~~~~el~~~~~~~l~  138 (358)
T 3bre_A           99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR  138 (358)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf             6354026788876225653463158763777777764101


No 59 
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99}
Probab=99.87  E-value=1.2e-22  Score=161.86  Aligned_cols=100  Identities=27%  Similarity=0.420  Sum_probs=92.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22112222222222222222222332124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      .++.+++|++.+|+..++++.+|+.+.||++||.||.+|++|+|++|||++|++.+||. +..+++++|++||+||||||
T Consensus         3 ~~~~i~~g~l~ld~~~~~v~~~~~~v~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkl   81 (109)
T 2hqn_A            3 GSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEE-PEMVTPNVIEVAINQIRQKM   81 (109)
T ss_dssp             CCCCEEETTEEEETTTTEEEETTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCS-CGGGCTTHHHHHHHHHHHHT
T ss_pred             CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHH
T ss_conf             99869994999988889999999999649999999999996799987899999986097-77767440999999999986


Q ss_pred             CCCCCCCCEEEECCCCEEECC
Q ss_conf             145677715778686303138
Q gi|254780526|r  202 RNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       202 ~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      +..+....|+||||.||+|..
T Consensus        82 ~~~~~~~~I~Tv~g~GYrl~~  102 (109)
T 2hqn_A           82 DKPLGISTVETVRRRGYRFCY  102 (109)
T ss_dssp             TTTSCCCCEEECSSSEEEECC
T ss_pred             HCCCCCCEEEEECCCCEEECC
T ss_conf             055999859997286438877


No 60 
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Probab=99.87  E-value=1.5e-22  Score=161.09  Aligned_cols=101  Identities=25%  Similarity=0.321  Sum_probs=90.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             22221122222222222222222223321242101234432112883400899998652876577766136889999998
Q gi|254780526|r  120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ++.+..+.+|++++|..+++++.+|+.+.||++||.||.+|+.|+|++|||++|.+.+||. +...++++|++||+|||+
T Consensus         6 ~~~~~~l~~g~l~ld~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRk   84 (110)
T 2pmu_A            6 EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRY-DFGGDVNVVESYVSYLRR   84 (110)
T ss_dssp             ----CEEEETTEEEETTTCCEEETTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCT-TCCSSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH
T ss_conf             8999869994899988889999999997568999999999997799765799998512577-778884889999999999


Q ss_pred             HCCCCCCCCCEEEECCCCEEECC
Q ss_conf             60145677715778686303138
Q gi|254780526|r  200 KLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       200 KL~~~~~~~~I~tvrg~GY~l~~  222 (223)
                      ||+.. +..+|+|+||.||+|+.
T Consensus        85 kL~~~-~~~~I~Tv~g~GY~l~~  106 (110)
T 2pmu_A           85 KIDTG-EKRLLHTLRGVGYVLRE  106 (110)
T ss_dssp             HHCCS-SSCCEEEETTTEEEECC
T ss_pred             HHCCC-CCCCEEEECCCCEEECC
T ss_conf             73779-99809995890279788


No 61 
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=99.87  E-value=2e-22  Score=160.40  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|.++.+++++..+.....||++++|+.|  |+++|+++++.+|+ .+++|||++|+
T Consensus        10 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD~~m--p~~~G~~~l~~ir~~~~~~piI~lt~   87 (154)
T 2rjn_A           10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PEMGGEVFLEQVAKSYPDIERVVISG   87 (154)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSSCHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9999799999999999999879989998999999999862899889966888--88881899999998588997899986


Q ss_pred             CCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             321000011122201-00010233333210000011122
Q gi|254780526|r   81 YPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        81 ~~~~~~~i~~l~~GA-ddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      .++.+..+++++.|| ||||.|||++++|..+|+..+++
T Consensus        88 ~~~~~~~~~ai~~Gavd~yL~KP~~~~~L~~~i~~al~~  126 (154)
T 2rjn_A           88 YADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL  126 (154)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf             699999999997699987788979999999999999999


No 62 
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.87  E-value=5.4e-23  Score=163.93  Aligned_cols=198  Identities=15%  Similarity=0.110  Sum_probs=139.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHH--HHCCCCEEEEEEECCCCCCHHHHHHHHH-HC-CCCCCEE
Q ss_conf             689709899999999999978-98899982858999999--8289967999900789662179998631-01-3321000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRII-RA-HSQVPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~l~--~~~~~d~~iid~~l~~~~~~g~~l~~~l-r~-~~~~pII   76 (223)
                      |+||||++.++..++..|+.. +..+......+...+..  ....+|++++|+  .+|+.+|+..+..+ +. .+++|||
T Consensus        10 VllvdD~~l~~~~L~~~Le~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~D~--~~~~~~~~~~~~~~~~~~~p~~~vi   87 (225)
T 3klo_A           10 VRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDY--SRISDDVLTDYSSFKHISCPDAKEV   87 (225)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEG--GGCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             99982879999999999947899649999757689998624425888899723--6899736999999999758998499


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             02443210000111222010001023333321000001112222222112222222222222222222332124210123
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI  156 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l  156 (223)
                      ++|+..+......++++||++|+.|+.++++|...|+++++.....++.+...-+.-...............||+||+++
T Consensus        88 vlt~~~~~~~~~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eV  167 (225)
T 3klo_A           88 IINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQI  167 (225)
T ss_dssp             EEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHH
T ss_conf             99615668999999986995999779999999999999847975310478888876531466533232134422256543


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             4432112883400899998652876577766136889999998601456777157
Q gi|254780526|r  157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD  211 (223)
Q Consensus       157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~  211 (223)
                      |.++++  |  .|..+|++.+      .++.+||++|++++++||+...-.+.+.
T Consensus       168 L~ll~~--G--~snkeIA~~L------~iS~~TVk~h~~~i~~KLgv~nr~el~~  212 (225)
T 3klo_A          168 IKLLGS--G--ASNIEIADKL------FVSENTVKTHLHNVFKKINAKNRLQALI  212 (225)
T ss_dssp             HHHHTT--T--CCHHHHHHHT------TCCHHHHHHHHHHHTTTSCCSSHHHHHH
T ss_pred             HHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             035533--9--9799999997------8899999999999999868999999999


No 63 
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.87  E-value=1.8e-22  Score=160.66  Aligned_cols=113  Identities=21%  Similarity=0.242  Sum_probs=101.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+.+++.+...|+..||.|..+.++.++..+.....||++++|+.  ||++||+++|+++|+. +++|||++|+
T Consensus         8 iLiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~--mP~~~G~e~~~~i~~~~~~~pvi~lt~   85 (394)
T 3eq2_A            8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLR--MPQIDGLELIRRIRQTASETPIIVLSG   85 (394)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCC--SSSSCTHHHHHHHHHTTCCCCEEEC--
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             999979999999999999978999999899999999986389999999897--899989999999985399983899980


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCC
Q ss_conf             321000011122201000102333332100-000111
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILA-RVAAIY  116 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~a-ri~a~l  116 (223)
                      .++.+++++++++||+||++||++..|++. +|+..+
T Consensus        86 ~~~~~~~~~~l~~Ga~dyl~KP~~~~~~~~~~i~~~l  122 (394)
T 3eq2_A           86 AGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL  122 (394)
T ss_dssp             -CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             5878999999976972089779986799999999876


No 64 
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=99.87  E-value=1.6e-22  Score=161.02  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=91.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22112222222222222222222332124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      .+..+.+|++.+|+..++++++++.+.||++||.||.+|+.|+|++|||++|.+.+||. +..+++++|++||+|||+||
T Consensus         5 ~~~~i~~g~~~ld~~~~~l~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~i~~~I~rLRkkl   83 (110)
T 1opc_A            5 EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGR-EYSAMERSIDVQISRLRRMV   83 (110)
T ss_dssp             ---CEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCS-SSCTTSSCHHHHHHHHHHHH
T ss_pred             CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf             77879997999998899999999999759999999999986477764199998784386-55767478999999999987


Q ss_pred             CCCCC-CCCEEEECCCCEEECC
Q ss_conf             14567-7715778686303138
Q gi|254780526|r  202 RNKLG-FDPVDSKRFLGYSIDW  222 (223)
Q Consensus       202 ~~~~~-~~~I~tvrg~GY~l~~  222 (223)
                      +..+. ..+|+|+||.||+|..
T Consensus        84 ~~~~~~~~~I~Tv~g~GY~l~~  105 (110)
T 1opc_A           84 EEDPAHPRYIQTVWGLGYVFVP  105 (110)
T ss_dssp             CSCTTSCSSEEEETTTEEEECC
T ss_pred             HHCCCCCCEEEEECCEEEEECC
T ss_conf             5368999849995786379856


No 65 
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.87  E-value=9.4e-24  Score=168.74  Aligned_cols=118  Identities=18%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC
Q ss_conf             9689709899999999999978988999828589999998289967999900789662179998631013-321000024
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS   79 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt   79 (223)
                      .|||||||+.++..+...|+..||.|..+.+++++........||++++|+.+  |+++|+++++.+|+. +.+||+++|
T Consensus         5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~l--p~~~G~el~~~l~~~~~~~pii~~t   82 (124)
T 1dc7_A            5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVIIMT   82 (124)
T ss_dssp             CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCCBC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             89999599999999999999889999998999999999983899999875889--9984599999999858999199998


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             43210000111222010001023333321000001112222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      +.++.+++++++++||+||+.|||++++|.++++..++|.+
T Consensus        83 ~~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~l~~~~  123 (124)
T 1dc7_A           83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ  123 (124)
T ss_dssp             CSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             98999999999986998078397999999999999999844


No 66 
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=99.86  E-value=3.3e-22  Score=159.01  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC
Q ss_conf             68970989999999999997898-8999828589999998289967999900789662179998631013---3210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~   77 (223)
                      ||||||++..++.+...|+..|| .|..+.++..+.......+||++++|+.|  |+++|+++++++|+.   +++|||+
T Consensus         7 ILiVDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dliilD~~m--P~~dG~el~~~ir~~~~~~~~piI~   84 (128)
T 1jbe_A            7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM--PNMDGLELLKTIRAXXAMSALPVLM   84 (128)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCC--SSSCHHHHHHHHHC--CCTTCCEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             99996989999999999998799689998999999999762899999996999--9999899999999756779993899


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             244321000011122201000102333332100000111222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      +|++++.++..+++++||++|+.|||++++|..+++.+++|.
T Consensus        85 lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~  126 (128)
T 1jbe_A           85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL  126 (128)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             989899999999998799899989899999999999999874


No 67 
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C}
Probab=99.86  E-value=4.3e-23  Score=164.58  Aligned_cols=121  Identities=21%  Similarity=0.218  Sum_probs=111.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             968970989999999999997898899982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      .|||||||+.+++.+...|+..||.|..+.+++++........|+++++|+++++++++|+..+.+++. .+++|||++|
T Consensus         8 ~VLIVDDd~~~r~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~~pvi~lt   87 (136)
T 3kto_A            8 IIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMA   87 (136)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf             79999799999999999999879999998999999999984799889999368647884089999997502688679997


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             432100001112220100010233333210000011122222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +.++.+.+++++++||+|||+|||++++|..+|+..+++.+.
T Consensus        88 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~re  129 (136)
T 3kto_A           88 SSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE  129 (136)
T ss_dssp             SSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf             059999999999759948998989999999999999998479


No 68 
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12}
Probab=99.86  E-value=3.5e-22  Score=158.80  Aligned_cols=120  Identities=15%  Similarity=0.121  Sum_probs=106.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             68970989999999999997898899-982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      ||||||++.+++.+...|++.|+.+. .+.+++++.......+||++++|+.|  |+++|+++++.+|+ .+++|||++|
T Consensus         4 vLIvDD~~~~r~~l~~~L~~~~~~vv~~a~~g~~al~~~~~~~pDlvilD~~m--P~~~G~e~~~~lr~~~~~~~iivlS   81 (134)
T 3f6c_A            4 AIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIIIVS   81 (134)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99996989999999999986899899998999999999872699999995999--9998999999999529998389996


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             43210000111222010001023333321000001112222222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN  123 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~  123 (223)
                      ++++.+...+++++||++|+.||+++++|..+|++++++....+
T Consensus        82 ~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~~~~~  125 (134)
T 3f6c_A           82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP  125 (134)
T ss_dssp             CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCC
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             78999999999987998999798999999999999987993588


No 69 
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=99.86  E-value=4.1e-22  Score=158.42  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=106.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101-33210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~   80 (223)
                      |||||||+.++..+...|+..||.|..+.++.++..+.....||++++|+.|  |++||+++++.+|+ .+++|||++|+
T Consensus         3 ILiVDDd~~~~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlVllDl~m--P~~dGlell~~lr~~~p~~pVIvlTg   80 (387)
T 1ny5_A            3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLL--PDVNGLEILKWIKERSPETEVIVITG   80 (387)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             9999488999999999999779999998999999999861899889995999--99999999999984499982899505


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             3210000111222010001023333321000001112
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      +++.+..++++++||+||+.||+++++|...++..++
T Consensus        81 ~~~~~~a~~A~~~GA~dyl~KP~~~~~L~~~i~~a~~  117 (387)
T 1ny5_A           81 HGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE  117 (387)
T ss_dssp             TTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             5413435444414765312587202567778876677


No 70 
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.86  E-value=3.2e-22  Score=159.06  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC---EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEEC
Q ss_conf             68970989999999999997898---899982858999999828996799990078966217999863101-33210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV---SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~---~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~   77 (223)
                      |||||||+.+++.+...|+..|+   .|..+.++.++..+....+||++++|+.  ||++||+++++.+|+ .+++||||
T Consensus         5 ILiVDD~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~~~pdlillDi~--MP~~dG~el~~~i~~~~p~~~iI~   82 (141)
T 3cu5_A            5 ILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCSVIF   82 (141)
T ss_dssp             EEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             999909999999999999965998459989799999999998679998997368--999999999999997587993999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             24432100001112220100010233333210000011122
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +|++++.+...+++++||+|||.|||++++|..+|+..+++
T Consensus        83 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~  123 (141)
T 3cu5_A           83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT  123 (141)
T ss_dssp             ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             97879999999999869998997989999999999999999


No 71 
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86  E-value=4.6e-22  Score=158.08  Aligned_cols=116  Identities=11%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHC----------CCCEEEEEEECCCCCCHHHHHHHHHHC
Q ss_conf             68970989999999999997898--899982858999999828----------996799990078966217999863101
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSA----------REDVSAIEAFLIGKGEKVLELPRIIRA   69 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~----------~~d~~iid~~l~~~~~~g~~l~~~lr~   69 (223)
                      |||||||+..+..+...|+..|+  .|..+.+++++..+....          .||++++|+  .||+++|+++++++|+
T Consensus         9 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~--~mP~~dG~el~~~ir~   86 (149)
T 1k66_A            9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDL--NLPGTDGREVLQEIKQ   86 (149)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECS--CCSSSCHHHHHHHHTT
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC--CCCCCCHHHHHHHHHH
T ss_conf             99998999999999999998699727999899999999998501111112268999899808--8999985899999985


Q ss_pred             CC---CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             33---210000244321000011122201000102333332100000111222
Q gi|254780526|r   70 HS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        70 ~~---~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      .+   ++|||++|+.++.+++.+++++||++|++||+++++|..+|+.++|+.
T Consensus        87 ~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~  139 (149)
T 1k66_A           87 DEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW  139 (149)
T ss_dssp             STTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             86669995899978999999999998799799979899999999999999998


No 72 
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.86  E-value=7.5e-22  Score=156.74  Aligned_cols=117  Identities=10%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      ||||||++.+++.+...|+..||.|..+.+++++.......+||++++|+.|  |+++|+++++.+|+.   .++|||++
T Consensus         9 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~~~eAl~~l~~~~~dlvilD~~m--P~~dG~~l~~~ir~~~~~~~~pii~l   86 (140)
T 3grc_A            9 ILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL--PDQDGVSLIRALRRDSRTRDLAIVVV   86 (140)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHTSGGGTTCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999699999999999999879999998999999999971899899853668--99978999999984725699978999


Q ss_pred             CCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             4432100-00111222010001023333321000001112222
Q gi|254780526|r   79 SDYPSLQ-TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        79 t~~~~~~-~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                      |+.+.+. ...+++++||+|||.|||++++|+++|+..+++..
T Consensus        87 t~~~~~~~~~~~a~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~  129 (140)
T 3grc_A           87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA  129 (140)
T ss_dssp             CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             6678758999999977998899898999999999999986077


No 73 
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99}
Probab=99.86  E-value=2.3e-22  Score=159.95  Aligned_cols=98  Identities=20%  Similarity=0.331  Sum_probs=88.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             11222222222222222222233212421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ...+.+.+.+|..+++++++|+.+.||++||.||.+|+.|+|++|||++|++.|||. +..++.++|++||+|||+||+.
T Consensus        17 e~~~~~~~~lD~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkl~~   95 (115)
T 2k4j_A           17 EPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESI-NPESSNKSIDVIIGRLRSKIEK   95 (115)
T ss_dssp             CCEEETTEEEETTTTEEEETTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCS-SCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             777688799987779999999997279999999999985799378699999997167-8677832099999999998531


Q ss_pred             CC-CCCCEEEECCCCEEECC
Q ss_conf             56-77715778686303138
Q gi|254780526|r  204 KL-GFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       204 ~~-~~~~I~tvrg~GY~l~~  222 (223)
                      .+ .+.+|+||||.||+|+.
T Consensus        96 ~~~~~~~I~Tvrg~GY~le~  115 (115)
T 2k4j_A           96 NPKQPQYIISVRGIGYKLEY  115 (115)
T ss_dssp             SSCCCSSCEEETTTEEECCC
T ss_pred             CCCCCCEEEEECCEEEEEEC
T ss_conf             58999869997897688859


No 74 
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=99.86  E-value=1.2e-21  Score=155.51  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=97.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHH-HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC
Q ss_conf             6897098999999999999789889998285899999-98289967999900789662179998631013-321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l-~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt   79 (223)
                      |||||||+.++..+...|+..||.|..+.++..+... .....||++++|+.|  |++||+++|+++|+. +++||||+|
T Consensus        18 ILvVDDd~~~~~~l~~~L~~~G~~v~~~~~g~~al~~l~~~~~~DlvilD~~l--P~~dG~~l~~~ir~~~~~~piI~lt   95 (138)
T 2b4a_A           18 VTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDLSIFSLLDIVKEQTKQPSVLILT   95 (138)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99996999999999999998599799809999999999836999889985888--9988899999999709999689998


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             4321000011122201000102333332100000111222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      ++++  +..++++.|| ||+.|||+++||.++|+...++.
T Consensus        96 ~~~~--~~~~~~~~ga-dyL~KP~~~~eL~a~v~~~~~~~  132 (138)
T 2b4a_A           96 TGRH--ELIESSEHNL-SYLQKPFAISELRAAIDYHKPSM  132 (138)
T ss_dssp             SCC----CCCCSSSCE-EEEESSCCHHHHHHHHHHTCCC-
T ss_pred             CCHH--HHHHHHHCCC-CEEECCCCHHHHHHHHHHHCCCC
T ss_conf             9817--9999853699-88989999999999999856114


No 75 
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=99.85  E-value=6.3e-22  Score=157.20  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEE
Q ss_conf             68970989999999999997898--8999828589999998289967999900789662179998631013---321000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII   76 (223)
                      ||+|||++..+..+...|+..|+  .+..+.+++++.......+||++++|+.  ||+++|+++++++|+.   .++|||
T Consensus         8 ILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~--mP~~~G~el~~~ir~~~~~~~iPiI   85 (144)
T 3kht_A            8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQHTPIV   85 (144)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTTCCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf             99995899999999999996899829999899999999997179999998699--9999999999999837878999189


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf             0244321000011122201000102333-332100000111222
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL  119 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~-~~eL~ari~a~lRr~  119 (223)
                      ++|+.++.++..+++++||++|+.||++ ..||.++|+++++|.
T Consensus        86 ~lS~~~~~~~~~~a~~~Ga~~~l~KP~~~~~eL~~~i~~~l~~~  129 (144)
T 3kht_A           86 ILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW  129 (144)
T ss_dssp             EEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             99888999999999986999999699999999999999999986


No 76 
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.85  E-value=9.2e-22  Score=156.20  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC-CCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             689709899999999999978988999828589999998289-96799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~-~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      |||||||+.+++.+...|+ .||.|.++.++.++........ +|++++|+.|  |+++|+++++.+|+ .+++|||++|
T Consensus         7 ILiVDDd~~~~~~l~~~L~-~~~~v~~a~~g~eAl~~l~~~~~~dlvi~D~~m--P~~~G~ell~~ir~~~~~~~vI~lt   83 (151)
T 3kcn_A            7 ILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRM--PGMEGTEVIQKARLISPNSVYLMLT   83 (151)
T ss_dssp             EEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCCSEEEEESCC--SSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999499999999999997-799899988999999999856997099983898--8987089999999868999689998


Q ss_pred             CCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             432100001112220-1000102333332100000111222
Q gi|254780526|r   80 DYPSLQTTLDFFDSG-VDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        80 ~~~~~~~~i~~l~~G-Addyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      +..+.+..+++++.| |+||+.|||++++|.++|++.+++.
T Consensus        84 ~~~d~~~~~~a~~~G~a~dyl~KP~~~~~L~~~v~~~l~~~  124 (151)
T 3kcn_A           84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY  124 (151)
T ss_dssp             CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf             25999999999967898737869999999999999999999


No 77 
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.85  E-value=1e-21  Score=155.84  Aligned_cols=116  Identities=15%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEE
Q ss_conf             689709899999999999978988-999828589999-9982899679999007896621799986310133---21000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII   76 (223)
                      ||||||++.+++.++..|+..||. |..+.++.++.. +....+||++++|+.  ||+++|+++++.+|+..   ++|||
T Consensus         8 ILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~dliilD~~--mP~~~G~el~~~ir~~~~~~~~pii   85 (129)
T 3h1g_A            8 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKEIPII   85 (129)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             99992889999999999998699699998999999999973799989962215--8888879999999837567999399


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             0244321000011122201000102333332100000111222
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      ++|++++.+++.+++++||++||.|||++++|.++|++++|+.
T Consensus        86 ~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~~L~~~  128 (129)
T 3h1g_A           86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN  128 (129)
T ss_dssp             EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             9976799999999998699899989899999999999997579


No 78 
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.85  E-value=1.3e-21  Score=155.26  Aligned_cols=116  Identities=15%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCEE
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-----321000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-----SQVPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-----~~~pII   76 (223)
                      ||||||++..+..+...|+..||.|..+.+++++........||++++|+.|  |+++|+++++.+|+.     ..+|||
T Consensus        17 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~~G~el~~~ir~~~~~~~~~~pii   94 (143)
T 3m6m_D           17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHM--PGMNGLDMLKQLRVMQASGMRYTPVV   94 (143)
T ss_dssp             EEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHHHHTTCCCCCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             9999588999999999999879999998999999999752899999983888--99988999999986284335899399


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             0244321000011122201000102333332100000111222
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      ++|++++.++..+++++||++|+.|||+.++|..+++.+.++.
T Consensus        95 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~l~~~~  137 (143)
T 3m6m_D           95 VLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST  137 (143)
T ss_dssp             EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             9978899999999998699889979899999999999999824


No 79 
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.85  E-value=1.6e-21  Score=154.69  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=104.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-C-EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CC-CCEEC
Q ss_conf             6897098999999999999789-8-8999828589999998289967999900789662179998631013-32-10000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG-V-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQ-VPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g-~-~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~-~pII~   77 (223)
                      |||||||+.+++.+...|+..| + .|..+.+++++..+....+||++++|+.|  |++||+++|+++|+. +. .||++
T Consensus         5 vLivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~m--P~~dG~el~~~ir~~~~~~~~ii~   82 (130)
T 1dz3_A            5 VCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIM--PHLDGLAVLERIRAGFEHQPNVIM   82 (130)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHHHCSSCCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf             999979999999999999858993799998999999999985599999982899--999889999999855999997999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             24432100001112220100010233333210000011122222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +|++++.+...+++++||++|+.|||++++|..+|+.++++..+
T Consensus        83 ~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~p  126 (130)
T 1dz3_A           83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTTP  126 (130)
T ss_dssp             EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC--
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf             97899999999999869979997999999999999999823772


No 80 
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.85  E-value=1.5e-21  Score=154.89  Aligned_cols=114  Identities=10%  Similarity=0.105  Sum_probs=99.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHC-------CCCEEEEEEECCCCCCHHHHHHHHHHCCC-
Q ss_conf             68970989999999999997898--899982858999999828-------99679999007896621799986310133-
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHS-   71 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~-------~~d~~iid~~l~~~~~~g~~l~~~lr~~~-   71 (223)
                      |||||||+..++.+...|+..|+  .+.++.+++++.......       .||++++|+.  ||+++|+++++++|+.+ 
T Consensus        11 ILiVdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~--mP~~~G~el~~~ir~~~~   88 (149)
T 1i3c_A           11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIKQNPD   88 (149)
T ss_dssp             EEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHHHCTT
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECC--CCCCCHHHHHHHHHHCCC
T ss_conf             999979999999999999976998479998999999999985002212689888998489--999864999999985804


Q ss_pred             --CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             --2100002443210000111222010001023333321000001112
Q gi|254780526|r   72 --QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        72 --~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                        ++||||+|+.++.+++.+++++||++||+||++.++|..+|+++++
T Consensus        89 ~~~iPvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~  136 (149)
T 1i3c_A           89 LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES  136 (149)
T ss_dssp             TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             479988999568999999999987998999798999999999999999


No 81 
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.85  E-value=1.5e-21  Score=154.77  Aligned_cols=115  Identities=11%  Similarity=0.065  Sum_probs=99.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHC-------CCCEEEEEEECCCCCCHHHHHHHHHHCCC-
Q ss_conf             6897098999999999999789--8899982858999999828-------99679999007896621799986310133-
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHS-   71 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~l~~~~-------~~d~~iid~~l~~~~~~g~~l~~~lr~~~-   71 (223)
                      |||||||+..+..+...|+..|  +.|..+.+++++.......       .||++++|+  .||++||+++++++|+.+ 
T Consensus         5 ILiVdDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdliilD~--~mP~~dG~el~~~ir~~~~   82 (140)
T 1k68_A            5 IFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXL--NLPKKDGREVLAEIKSDPT   82 (140)
T ss_dssp             EEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECS--SCSSSCHHHHHHHHHHSTT
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHCCC
T ss_conf             99997999999999999996799818999899999999998624544047996899988--9999855999999983866


Q ss_pred             --CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             --21000024432100001112220100010233333210000011122
Q gi|254780526|r   72 --QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        72 --~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                        ++||||+|+.++.+++.+++++||++||.||+++++|.++|+++++.
T Consensus        83 ~~~iPvi~ls~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~i~~~  131 (140)
T 1k68_A           83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF  131 (140)
T ss_dssp             GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             5899899995789999999999879989997989999999999999999


No 82 
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=99.85  E-value=1.1e-21  Score=155.70  Aligned_cols=116  Identities=15%  Similarity=0.163  Sum_probs=103.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-CEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             6897098999999999999789-8899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG-VSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g-~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
                      ||||||++.+|+.+...|+..| +.|. .+.++.++..+.....||++++|+.|  |+++|+++++++|+ .+++|||++
T Consensus         6 ILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~m--P~~~G~e~~~~ir~~~~~~~vI~l   83 (133)
T 3b2n_A            6 LIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM--PGMTGLEVLAEIRKKHLNIKVIIV   83 (133)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             999929999999999999868996999998999999999985699999995778--999889999999986899968999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |+.++.+...+++++||++|+.||+++++|...|+++++..
T Consensus        84 T~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g~  124 (133)
T 3b2n_A           84 TTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE  124 (133)
T ss_dssp             ESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             67899999999998799789979999999999999999718


No 83 
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.84  E-value=8.9e-22  Score=156.28  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=104.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-CEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCC-CCHHHHHHHHHHCC---CCCCE
Q ss_conf             6897098999999999999789-889998285899999982-899679999007896-62179998631013---32100
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGK-GEKVLELPRIIRAH---SQVPL   75 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~-~~~g~~l~~~lr~~---~~~pI   75 (223)
                      ||||||++..|+.++..|+..| |.|..+.+++++..+... .+||++++|+.|  | +++|+++++.+|+.   +++||
T Consensus         7 ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~m--P~~~~g~~l~~~ir~~~~~~~~pi   84 (140)
T 3lua_A            7 VLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF--PVEKEGLEVLSAIRNNSRTANTPV   84 (140)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS--SSHHHHHHHHHHHHHSGGGTTCCE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf             999949999999999999867990899989999999999738998599986899--999988899998764424689988


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0024432100001112220100010233333210000011122222
Q gi|254780526|r   76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      |++|+.++.++..+++++||+||+.|||++++|.++|++++|+.+.
T Consensus        85 I~lT~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~i~~~L~~~~~  130 (140)
T 3lua_A           85 IIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR  130 (140)
T ss_dssp             EEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             9982799999999999869989998989999999999999998899


No 84 
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.84  E-value=1.3e-21  Score=155.16  Aligned_cols=115  Identities=13%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEEC
Q ss_conf             689709899999999999978988-9998285899999982899679999007896621799986310133---210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~   77 (223)
                      ||||||++..+..+...|+..||. |..+.+++++..+....+||++++|+.|  |++||+++++.+|+.+   ++|||+
T Consensus         9 ILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~~~~~~~dlii~D~~m--P~~dG~~l~~~ir~~~~~~~~pii~   86 (129)
T 1p6q_A            9 VLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNM--PKMDGLGLLQAVRANPATKKAAFII   86 (129)
T ss_dssp             EEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSS--CSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf             99995989999999999998799299998999999999971899899984588--9998799999998385668982999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             24432100001112220100010233333210000011122
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +|+.++.+...+++++||+||+.|||+.++|.++|++++.+
T Consensus        87 ls~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~vl~~  127 (129)
T 1p6q_A           87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA  127 (129)
T ss_dssp             CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             98049999999999879988998989999999999999985


No 85 
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.84  E-value=2.8e-21  Score=153.15  Aligned_cols=116  Identities=21%  Similarity=0.299  Sum_probs=103.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-CCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             689709899999999999978-98899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD-GVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~-g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
                      ||||||++.+++.+...|+.. |+.+. .+.++.++..+.....||++++|+.|  |+++|+++++.+|+ .+.+|||++
T Consensus         8 VLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDlvllDi~m--P~~~G~e~~~~ir~~~~~~~iivl   85 (153)
T 3cz5_A            8 IMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHIRQWDGAARILIF   85 (153)
T ss_dssp             EEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             999929999999999999858991899998999999999754699689996457--998789999999985899968999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |++++.+...+++++||++||.||+++++|..+|+++++..
T Consensus        86 t~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~  126 (153)
T 3cz5_A           86 TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR  126 (153)
T ss_dssp             ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred             EEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             81489999999998699838968999999999999998499


No 86 
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170}
Probab=99.84  E-value=4.1e-21  Score=152.10  Aligned_cols=114  Identities=11%  Similarity=0.149  Sum_probs=96.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHH---------HCCCCEEEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf             689709899999999999978988--999828589999998---------289967999900789662179998631013
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQS---------SAREDVSAIEAFLIGKGEKVLELPRIIRAH   70 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~---------~~~~d~~iid~~l~~~~~~g~~l~~~lr~~   70 (223)
                      |||||||+..++.+...|+..|+.  |..+.++.++.....         ..+||++++  |+.||++||+++++.+|+.
T Consensus         7 ILiVDDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~dlIil--D~~mP~~dG~el~~~ir~~   84 (152)
T 3heb_A            7 IVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLL--DLNLPDMTGIDILKLVKEN   84 (152)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEE--CSBCSSSBHHHHHHHHHHS
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCEEEE--ECCCCCCCHHHHHHHHHHC
T ss_conf             99997999999999999997799638999788899999984320455665069998998--6899999889999999848


Q ss_pred             C---CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             3---2100002443210000111222010001023333321000001112
Q gi|254780526|r   71 S---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        71 ~---~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      +   .+|||++|+.++.+++.+++++||++||+||++.++|..+|+++..
T Consensus        85 ~~~~~iPvI~lTa~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~i~~l~~  134 (152)
T 3heb_A           85 PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL  134 (152)
T ss_dssp             TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             77799958999776999999999986998999798999999999999999


No 87 
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84  E-value=4.6e-21  Score=151.77  Aligned_cols=116  Identities=10%  Similarity=0.180  Sum_probs=100.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHH-----CCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCC
Q ss_conf             689709899999999999978988-9998285899999982-----89967999900789662179998631013--321
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKGEKVLELPRIIRAH--SQV   73 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~-----~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~   73 (223)
                      ||+|||++..++.+...|+..|+. |..+.+++++......     ..||++++|+.  ||+++|+++++.+|+.  .++
T Consensus         5 VLiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~--MP~~dG~~~~~~ir~~~~~~~   82 (133)
T 2r25_B            5 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGYTS   82 (133)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCC
T ss_conf             999969899999999999986994899989999999999874213689888997388--899889999999986489999


Q ss_pred             CEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             0000244321000011122201000102333332100000111222
Q gi|254780526|r   74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        74 pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |||++|++++.++..+++++||++||.|||+.++|...++.++...
T Consensus        83 piI~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~  128 (133)
T 2r25_B           83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY  128 (133)
T ss_dssp             CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             2899974699999999998699889979899999999999999998


No 88 
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.83  E-value=3.9e-21  Score=152.27  Aligned_cols=116  Identities=15%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHHH-HCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEEC
Q ss_conf             689709899999999999978--988999828589999998-28996799990078966217999863101-33210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD--GVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~l~~-~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~   77 (223)
                      ||||||++.+|+++...|+..  |+.|..+.++.++..... ...||++++|+.|  |+++|+++++++|+ .+++|||+
T Consensus         6 VLIvDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~m--P~~~G~e~l~~ir~~~p~~~iiv   83 (154)
T 2qsj_A            6 VLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL--PDAEAIDGLVRLKRFDPSNAVAL   83 (154)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHHCTTSEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             9999499999999999997289984999966899999999745999789980888--99888999999998788997999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             244321000011122201000102333332100000111222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      +|++++.+...+++++||++||.||+++++|...|+.+++..
T Consensus        84 lT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~  125 (154)
T 2qsj_A           84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE  125 (154)
T ss_dssp             C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred             EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             980289999999998599889979999999999999998799


No 89 
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.83  E-value=5.7e-21  Score=151.21  Aligned_cols=116  Identities=11%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECC
Q ss_conf             689709899999999999978988--9998285899999982899679999007896621799986310133-2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~l   78 (223)
                      |||||||+.+++.+...|+..|+.  |..+.++.++.......+||++++|+.|  |++||+++++.+|+.+ .+|||++
T Consensus        12 vLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~m--P~~dG~el~~~ir~~~~~~~iI~~   89 (143)
T 2qv0_A           12 VIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPFIVFI   89 (143)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             999949999999999999868992799997999999999986699989987888--889989999999954999808999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4432100001112220100010233333210000011122222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      |+.++  ..+++++.||+|||.|||+.++|.++++.++++.+.
T Consensus        90 t~~~e--~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~~  130 (143)
T 2qv0_A           90 TAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ  130 (143)
T ss_dssp             ESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCHH--HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             77889--999999859988997999999999999999999997


No 90 
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.83  E-value=7.5e-21  Score=150.45  Aligned_cols=116  Identities=16%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             689709899999999999978988--99982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
                      ||||||++.+++.+...|+..|..  |..+.+++++..+.....||++++|+.|  |+++|+++++.+|+ .+++|||++
T Consensus        18 VLIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDvvllDl~m--p~~~G~el~~~ir~~~~~~~vivl   95 (152)
T 3eul_A           18 VVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVRSYELPTRVLLI   95 (152)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             999949999999999999859895799998999999999984699999981899--998999999999975899859999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111222
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL  119 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~  119 (223)
                      |++++.+...+++++||++||.||+++++|+..|+.+++..
T Consensus        96 S~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~aI~~~~~g~  136 (152)
T 3eul_A           96 SAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR  136 (152)
T ss_dssp             ESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             68699999999998699899979999999999999998799


No 91 
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=99.83  E-value=1.6e-20  Score=148.36  Aligned_cols=112  Identities=16%  Similarity=0.116  Sum_probs=99.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      +||||||+..++.+...|+..||.|..+.+++++........||++++|+.|  |+++|+++++.+|+.   +++|||++
T Consensus         6 vLiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~m--P~~~G~el~~~lr~~~~~~~~pii~l   83 (127)
T 3i42_A            6 ALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDTSGLALVKQLRALPMEKTSKFVAV   83 (127)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9999578999999999999879999998999999999980899999862789--99845999999984767899949999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
                      |+.++.+....+ ..|+|+||.|||++++|.++++++.
T Consensus        84 t~~~~~~~~~~~-~~g~~~~L~KP~~~~~L~~~l~~l~  120 (127)
T 3i42_A           84 SGFAKNDLGKEA-CELFDFYLEKPIDIASLEPILQSIE  120 (127)
T ss_dssp             ECC-CTTCCHHH-HHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred             ECCCCHHHHHHH-HHCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             788879999999-7178789979899999999999804


No 92 
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.81  E-value=2e-20  Score=147.81  Aligned_cols=114  Identities=16%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC------CCCCE
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013------32100
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH------SQVPL   75 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~------~~~pI   75 (223)
                      ||+|||++..+..+...|+..|+.|..+.+++++..+.. .+||++++|+.|  |+++|+++++.+|+.      +.+||
T Consensus        10 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~-~~~dlii~D~~m--P~~dG~e~~~~ir~~~~~~~~~~~~i   86 (136)
T 1dcf_A           10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDVCM--PGVENYQIALRIHEKFTKQRHQRPLL   86 (136)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTCSEEEEECCS--STTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             999939899999999999987999999899999998624-599899994568--99748999999998450126898869


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             0024432100001112220100010233333210000011122
Q gi|254780526|r   76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      |++|++.+.+++.+++++|+|+||.||++.++|...++.++++
T Consensus        87 i~~Ta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~  129 (136)
T 1dcf_A           87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP  129 (136)
T ss_dssp             EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             9996899999999999869998998989999999999999600


No 93 
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.81  E-value=5e-20  Score=145.28  Aligned_cols=111  Identities=12%  Similarity=0.125  Sum_probs=100.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
                      |||||||+..++.+...|+..||.|..+.+++++........||++++|+.|  |+++|+++|+.+|+.+   .+|||++
T Consensus         4 ILiVdd~~~~~~~~~~~L~~~g~~v~~a~~~~~al~~l~~~~pdlvllD~~l--p~~~G~~l~~~lr~~~~~~~~pii~~   81 (119)
T 2j48_A            4 ILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQADPHPPLVLF   81 (119)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCCSSCCCEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9999799999999999999889999998999999999981799989996379--99999999999982888898649999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             443210000111222010001023333321000001112
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      |+.++   ..+++++|||||+.|||++++|.+++++++.
T Consensus        82 t~~~~---~~~~~~~ga~~~l~KP~~~~~L~~~v~~ll~  117 (119)
T 2j48_A           82 LGEPP---VDPLLTAQASAILSKPLDPQLLLTTLQGLCP  117 (119)
T ss_dssp             ESSCC---SSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred             ECCHH---HHHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf             77188---9999987998999898999999999998839


No 94 
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.81  E-value=4.4e-20  Score=145.59  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=98.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC------CCCCE
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013------32100
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH------SQVPL   75 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~------~~~pI   75 (223)
                      ||||||++..+..+...|+..||.|..+.++.++........||++++|+.|  |++||+++++.+|+.      +.+||
T Consensus        13 VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~~~~~ipi   90 (140)
T 3c97_A           13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQM--PVMDGLEAVSEIRNYERTHNTKRASI   90 (140)
T ss_dssp             EEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTC--CSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             9999398999999999999879999998999999999870799889994799--99899999999983521037899839


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             0024432100001112220100010233333210000011122
Q gi|254780526|r   76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR  118 (223)
Q Consensus        76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr  118 (223)
                      +++|+.+..+++   ..+|+|+|+.|||++++|...|++++.+
T Consensus        91 i~~ta~~~~~~~---~~ag~~~~l~KP~~~~~L~~~i~~~~~~  130 (140)
T 3c97_A           91 IAITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHSE  130 (140)
T ss_dssp             EEEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred             EEEECCCCHHHH---HHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             999899629999---8579988998989999999999999745


No 95 
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=99.81  E-value=1.7e-20  Score=148.26  Aligned_cols=117  Identities=20%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
                      |||||||+..++.+...|+..|+.|.++++.++ ........||++++|+  .||++||+++++.+|+. +++|||++|+
T Consensus         6 ILIVDDd~~~~~~l~~~L~~~g~~v~a~~~~ea-l~~l~~~~~dlillD~--~mP~~dG~el~~~lr~~~~~~~iiils~   82 (135)
T 3eqz_A            6 VFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRA-FLTLSLNKQDIIILDL--MMPDMDGIEVIRHLAEHKSPASLILISG   82 (135)
T ss_dssp             EEEECSCHHHHHHHHHHHTTTCSCEEEESCHHH-HTTSCCCTTEEEEEEC--CTTTTHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEECCHHHH-HHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             999929999999999999978998999178999-9998658999999859--9999989999999995299997999983


Q ss_pred             CCC-----CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321-----00001112220100010233333210000011122222
Q gi|254780526|r   81 YPS-----LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        81 ~~~-----~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      +++     .+.+.+++.+||+|||.|||++++|..++++++||...
T Consensus        83 ~~~~~~~~~~~~~~~~~~g~~d~l~KP~~~~~L~~~l~~~~~r~a~  128 (135)
T 3eqz_A           83 YDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE  128 (135)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             5765440099999995599987997989999999999999989818


No 96 
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.80  E-value=6.3e-20  Score=144.62  Aligned_cols=112  Identities=11%  Similarity=0.087  Sum_probs=94.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHH------CCCCEEEEEEECCCCCCHHHHHHHHHHCCC--
Q ss_conf             6897098999999999999789--889998285899999982------899679999007896621799986310133--
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSS------AREDVSAIEAFLIGKGEKVLELPRIIRAHS--   71 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~l~~~------~~~d~~iid~~l~~~~~~g~~l~~~lr~~~--   71 (223)
                      |||||||+..++.+...|++.|  +.|..+.+++++..+...      ..||++++|+  .||+++|+++++++|+.+  
T Consensus        10 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~--~mP~~~G~el~~~ir~~~~~   87 (143)
T 2qvg_A           10 ILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDI--NIPKMNGIEFLKELRDDSSF   87 (143)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEET--TCTTSCHHHHHHHHTTSGGG
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCHHHHHHHHHCCCC
T ss_conf             9999799999999999999769984999989999999999841233037987899648--78899727999999857777


Q ss_pred             -CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             -21000024432100001112220100010233333210000011
Q gi|254780526|r   72 -QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI  115 (223)
Q Consensus        72 -~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~  115 (223)
                       ++|||++|+.++.+++.+++++||+|||.|||++++|+..+..+
T Consensus        88 ~~ipiI~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~~~  132 (143)
T 2qvg_A           88 TDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL  132 (143)
T ss_dssp             TTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             999199997889999999999879989998979999999999999


No 97 
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=99.80  E-value=2e-19  Score=141.46  Aligned_cols=117  Identities=16%  Similarity=0.226  Sum_probs=101.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             6897098999999999999789889998285899999982-8996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      |||||||+.+++.+...|+..||.|..+.+++++...... .++|++++|+.+| ++++|+++++.+|+ .+++|||++|
T Consensus         8 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~s~~eAl~~l~~~~~~dlvi~D~~~p-~~~~G~el~~~ir~~~~~~pii~~s   86 (132)
T 2rdm_A            8 ILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFC-QPPDGWQVARVAREIDPNMPIVYIS   86 (132)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCS-SSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             999979999999999999987999999899999999998389987998730058-9999999999999749899689997


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             432100001112220100010233333210000011122222
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
                      ++++.+...++++.|+  ||.|||++++|..+|+.++++.++
T Consensus        87 ~~~~~~~~~~~~~~~~--~L~KP~~~~~L~~~i~~~l~~r~G  126 (132)
T 2rdm_A           87 GHAALEWASNGVPDSI--ILEKPFTSAQLITAVSQLLNAREG  126 (132)
T ss_dssp             SSCCTTHHHHSCTTCE--EEESSCCHHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHCCCCE--EEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             5699899997352890--898999999999999999998799


No 98 
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.77  E-value=2.4e-19  Score=140.96  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-CCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC--CCEE
Q ss_conf             689709899999999999978-988-999828589999-99828996799990078966217999863101332--1000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD-GVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ--VPLI   76 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~-g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~--~pII   76 (223)
                      ||||||++..|+.+...|+.. |+. |..+.+++++.. +....+||++++|+.  ||++||+++++++|+.+.  +|+|
T Consensus        16 VLIVDD~~~~r~~l~~~L~~~~~~~vv~~A~~g~eAl~~l~~~~~~DliilD~~--MP~~dG~e~~~~ir~~~~~~i~ii   93 (145)
T 3kyj_B           16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIE--MPVMDGMEFLRHAKLKTRAKICML   93 (145)
T ss_dssp             EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTT--SCCCTTCHHHHHHHHHCCCEEC-C
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             999969899999999999859994699998999999999983699989998789--999999999999985699693999


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             0244321000011122201000102333332
Q gi|254780526|r   77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE  107 (223)
Q Consensus        77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~e  107 (223)
                      ++|++++.++..+++++||+|||.|||+...
T Consensus        94 ~~t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~  124 (145)
T 3kyj_B           94 SSVAVSGSPHAARARELGADGVVAKPSGTVS  124 (145)
T ss_dssp             BSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-
T ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             9960799899999998699899989998477


No 99 
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75  E-value=2.3e-18  Score=134.73  Aligned_cols=117  Identities=15%  Similarity=0.075  Sum_probs=97.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHH-----CCCCEEEEEEECCCCCCHHHHHHHHHHCC----
Q ss_conf             68970989999999999997898--89998285899999982-----89967999900789662179998631013----
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKGEKVLELPRIIRAH----   70 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~-----~~~d~~iid~~l~~~~~~g~~l~~~lr~~----   70 (223)
                      |||||||+..+..+...|+..|+  .|..+.+++++......     ..||++++|+.  ||++||+++++.+|+.    
T Consensus        12 ILiVDDd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~--MP~~dG~el~~~ir~~~~~~   89 (146)
T 3ilh_A           12 VLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQHFQPM   89 (146)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHHCGGG
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCC
T ss_conf             9999798999999999999779981899989999999999863102789999998489--89997599999998608512


Q ss_pred             -CCCCEECCCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             -32100002443210000111-222010001023333321000001112222
Q gi|254780526|r   71 -SQVPLIGISDYPSLQTTLDF-FDSGVDDVVNKPIHHREILARVAAIYRRLK  120 (223)
Q Consensus        71 -~~~pII~lt~~~~~~~~i~~-l~~GAddyl~KP~~~~eL~ari~a~lRr~~  120 (223)
                       ..+||+++|+..+.++..++ ...|||+|++||++.++|..+++.++++..
T Consensus        90 ~~~~~viilts~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~g~  141 (146)
T 3ilh_A           90 KNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH  141 (146)
T ss_dssp             TTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             4887199997889989999999977998899798999999999999997147


No 100
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.75  E-value=3.8e-19  Score=139.73  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=97.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      ||+||||+..++.+...|+..||.|..+.++.++.    ...||++++|+.  ||+++|.++++.+++.+++|||++|++
T Consensus        15 vLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al----~~~~D~vl~D~~--mp~~~~~~~~~~~~~~~~~pvI~lt~~   88 (196)
T 1qo0_D           15 VLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DVPVDVVFTSIF--QNRHHDEIAALLAAGTPRTTLVALVEY   88 (196)
T ss_dssp             EEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SSCCSEEEEECC--SSTHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHC----CCCCCEEEEECC--CCCCCHHHHHHHHHCCCCCCEEEEECC
T ss_conf             99995799999999999998699887169979984----889998998489--999859999999864999988998457


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             210000111222010001023333321000001112
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR  117 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR  117 (223)
                      ++.+...+++++||+|||.|||++.+|..+++..+.
T Consensus        89 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~~  124 (196)
T 1qo0_D           89 ESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR  124 (196)
T ss_dssp             CSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             999999999985999865599998999999999999


No 101
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.74  E-value=4.2e-18  Score=133.15  Aligned_cols=113  Identities=17%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC
Q ss_conf             68970989999999999997898--8999828589999998289967999900789662179998631013321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt   79 (223)
                      ||||||++.+|+.+...|+..|+  .|..+.+++++..+....+||++++|+.|  |++||+++++.+++....|+++++
T Consensus         6 VLIVDD~~~~R~~l~~~L~~~~~~~vV~~A~~g~eAl~~~~~~~pDvvilDi~M--P~mdGle~l~~i~~~~~~~ii~i~   83 (349)
T 1a2o_A            6 VLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEM--PRMDGLDFLEKLMRLRPMPVVMVS   83 (349)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCC--SSSCHHHHHHHHHHSSCCCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             999959899999999999858896999997999999999962799899997978--999989999998875899704899


Q ss_pred             CCCC--CCCCCCCCCCCCEEEEECCCCC---------CCCCCCCCCCC
Q ss_conf             4321--0000111222010001023333---------32100000111
Q gi|254780526|r   80 DYPS--LQTTLDFFDSGVDDVVNKPIHH---------REILARVAAIY  116 (223)
Q Consensus        80 ~~~~--~~~~i~~l~~GAddyl~KP~~~---------~eL~ari~a~l  116 (223)
                      ...+  .+...+++++||+||+.||+..         ++|..++++..
T Consensus        84 ~~~~~~~~~~~~Al~~GA~dyl~KP~~~~~~~~~~~~~~L~~kir~~~  131 (349)
T 1a2o_A           84 SLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA  131 (349)
T ss_dssp             CCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             985044177788997598199977840245689999999888888767


No 102
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima}
Probab=99.52  E-value=1.5e-15  Score=117.05  Aligned_cols=82  Identities=7%  Similarity=0.049  Sum_probs=72.1

Q ss_pred             EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             899982858999999828996799990078966217999863101-3321000024432100001112220100010233
Q gi|254780526|r   25 SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI  103 (223)
Q Consensus        25 ~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~  103 (223)
                      .|..|.++.++.......+||++++|+.|  |++||+++++.+|+ .+++||||+|++++.++.++++++||+||+.||+
T Consensus         7 vv~~A~~g~eal~~~~~~~pdlv~~Di~m--P~~~G~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~y~~Kp~   84 (237)
T 3cwo_X            7 IVDDATNGREAVEKYKELKPDIVTMDITM--PEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA   84 (237)
T ss_dssp             EEECCCSSSTTHHHHHHHCCSCEEEECCS--TTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
T ss_conf             99985999999999984399999992878--9989999999999868998499998165132324788459876998985


Q ss_pred             CCCCC
Q ss_conf             33321
Q gi|254780526|r  104 HHREI  108 (223)
Q Consensus       104 ~~~eL  108 (223)
                      +.+++
T Consensus        85 ~~~~~   89 (237)
T 3cwo_X           85 AVENP   89 (237)
T ss_dssp             HHHCT
T ss_pred             CCCCH
T ss_conf             63677


No 103
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.30  E-value=5.4e-13  Score=100.99  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=82.5

Q ss_pred             EEEECCCHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC
Q ss_conf             68970989999999999997-89889998285899999982899679999007896621799986310133210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~   80 (223)
                      ||||||++..+..+...|.+ .|+.+.++++.+++. ......||++++|+  .||+++|+++++.+++. ++||+++|+
T Consensus         7 ILvVdD~~~~~~~l~~~L~~~~~~~v~~~~~~ea~~-~~~~~~~dlillD~--~mP~~~g~e~~~~l~~~-~~pvi~~t~   82 (259)
T 3luf_A            7 ILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGAR-HCQGDEYVVALVDL--TLPDAPSGEAVKVLLER-GLPVVILTA   82 (259)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHCCEEEEESSTGGGT-TCCTTTEEEEEEES--CBTTBTTSHHHHHHHHT-TCCEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHC-CCCCCCCCC
T ss_conf             999979999999999999975998999938699999-96589998899978--88754023578987640-387423467


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             3210000111222010001023333321
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREI  108 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL  108 (223)
                      ..+...+..++++|+++|+.||.....+
T Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~  110 (259)
T 3luf_A           83 DISEDKREAWLEAGVLDYVMKDSRHSLQ  110 (259)
T ss_dssp             C-CHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             5457889999974886444543210000


No 104
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.64  E-value=1.9e-08  Score=72.32  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCEEEECCC
Q ss_conf             222222332124-21012344321128834008999986528765777661368899999986014567-7715778686
Q gi|254780526|r  139 DPEVQGEVFPLP-RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFL  216 (223)
Q Consensus       139 ~~~~~g~~i~LT-~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~-~~~I~tvrg~  216 (223)
                      .+..+|+.+.++ +|-..||.+|+.++|++|+|++|.+.+|+..+.....+++.++|++|||.|+..+. ...+....+.
T Consensus        20 ~v~~~g~~v~~~~~K~r~LLa~L~l~~g~~v~r~~L~~~LWpd~~~~~a~~~Lr~~l~~LRk~L~~~~~~~~~~~~~~~~   99 (388)
T 2ff4_A           20 QMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPP   99 (388)
T ss_dssp             EEEETTEECCCCSHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSS
T ss_pred             EEEECCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             99999998679975999999999968998681999998606999833588999999999999751036787259994287


Q ss_pred             CEEECC
Q ss_conf             303138
Q gi|254780526|r  217 GYSIDW  222 (223)
Q Consensus       217 GY~l~~  222 (223)
                      ||.+..
T Consensus       100 ~y~l~~  105 (388)
T 2ff4_A          100 GYRLSI  105 (388)
T ss_dssp             EEEECC
T ss_pred             EEEECC
T ss_conf             154225


No 105
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.10  E-value=7.9e-06  Score=55.85  Aligned_cols=111  Identities=20%  Similarity=0.316  Sum_probs=87.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l   78 (223)
                      +++++++...+..+...+....+..  .........+....++++++++.  .+|..++.+.++..+..   ..+|++.+
T Consensus       155 ~~~~d~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~l~~~~~~dlvl~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (459)
T 1w25_A          155 VLIVDDNERQAQRVAAELGVEHRPV--IESDPEKAKISAGGPVDLVIVNA--AAKNFDGLRFTAALRSEERTRQLPVLAM  230 (459)
T ss_dssp             EEEECSCHHHHHHHHHHHTTTSEEE--EECCHHHHHHHHHSSCSEEEEET--TCSSSCHHHHHHHHHTSGGGTTCCEEEE
T ss_pred             EEECCCCHHHHHHHHHHHHCCCEEE--EECCHHHHHHHCCCCCEEEEECH--HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5530535999999999853156077--73686899983599960999613--6513314889888764100433112212


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             44321000011122201000102333332100000111
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
                      ++.+.......+++.|+++|+.||+.+.++..++....
T Consensus       231 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  268 (459)
T 1w25_A          231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQI  268 (459)
T ss_dssp             ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHH
T ss_conf             57530789999998155311045531001145555554


No 106
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=97.43  E-value=9.7e-05  Score=48.97  Aligned_cols=61  Identities=25%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf             21242101234432112883400899998652876577766136889999998601456777157786863
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG  217 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~G  217 (223)
                      -.||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+...-.+.+.-.+..|
T Consensus        26 ~~LT~rE~evl~ll~~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~g   86 (95)
T 3c57_A           26 SGLTDQERTLLGLLSE--G--LTNKQIADRM------FLAEKTVKNYVSRLLAKLGMERRTQAAVFATELK   86 (95)
T ss_dssp             -CCCHHHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCCCCC---------
T ss_pred             CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             3049999999999990--7--9999998794------9789999999999999978999999999999939


No 107
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.27  E-value=0.00021  Score=46.92  Aligned_cols=53  Identities=21%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             321242101234432112883400899998652876577766136889999998601456777
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD  208 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~  208 (223)
                      ...||++|.++|.++++  |+  |..||++.+      .++.+||+.|+.++++||+...-..
T Consensus       173 ~~~LT~RE~evL~l~a~--G~--t~~eIA~~L------~iS~~TV~~h~~~i~~KLgv~nr~q  225 (236)
T 2q0o_A          173 KQMLSPREMLCLVWASK--GK--TASVTANLT------GINARTVQHYLDKARAKLDAESVPQ  225 (236)
T ss_dssp             GGSCCHHHHHHHHHHHT--TC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             34399879999999866--99--999999996------9999999999999999868999999


No 108
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.20  E-value=0.00025  Score=46.42  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             23321242101234432112883400899998652876577766136889999998601456777
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD  208 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~  208 (223)
                      .....||++|.++|.+++.  |  .|..||++.+      .++.+||+.|+.++++||+...-..
T Consensus       169 ~~~~~LT~RE~evL~~~a~--G--~s~~eIA~~L------~iS~~TV~~hl~~i~~KLg~~nr~q  223 (234)
T 1l3l_A          169 EDAAWLDPKEATYLRWIAV--G--KTMEEIADVE------GVKYNSVRVKLREAMKRFDVRSKAH  223 (234)
T ss_dssp             ECCCCCCHHHHHHHHHHTT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             7777899899999999976--9--9999999996------9899999999999999868999999


No 109
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=97.19  E-value=0.00025  Score=46.36  Aligned_cols=54  Identities=26%  Similarity=0.429  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             2124210123443211288340089999865287657776613688999999860145677715
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV  210 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I  210 (223)
                      -.||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+...-.+.+
T Consensus        20 ~~LT~rE~~vl~lla~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Klgv~~r~elv   73 (82)
T 1je8_A           20 NQLTPRERDILKLIAQ--G--LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSRVEAA   73 (82)
T ss_dssp             GGSCHHHHHHHHHHTT--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             4199999999999992--8--9999999897------959999999999999983899999999


No 110
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=97.05  E-value=7.5e-05  Score=49.67  Aligned_cols=56  Identities=30%  Similarity=0.349  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             212421012344321128834008999986528765777661368899999986014567771577
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS  212 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t  212 (223)
                      -.||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+.......+..
T Consensus        10 ~~LT~rE~~vl~~l~~--G--~s~~eIA~~L------~iS~~TV~~h~~~i~~Kl~v~~r~~lv~~   65 (74)
T 1fse_A           10 PLLTKREREVFELLVQ--D--KTTKEIASEL------FISEKTVRNHISNAMQKLGVKGRSQAVVE   65 (74)
T ss_dssp             CCCCHHHHHHHHHHTT--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             9879999999999992--7--9999999997------98999999999999999589999999999


No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=97.04  E-value=6.1e-05  Score=50.24  Aligned_cols=55  Identities=25%  Similarity=0.350  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             12421012344321128834008999986528765777661368899999986014567771577
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS  212 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t  212 (223)
                      .||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+.....+++.-
T Consensus        16 ~LT~rE~~vl~~l~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~Klgv~~r~elv~~   70 (79)
T 1x3u_A           16 TLSERERQVLSAVVA--G--LPNKSIAYDL------DISPRTVEVHRANVMAKMKAKSLPHLVRM   70 (79)
T ss_dssp             HHCHHHHHHHHHHTT--T--CCHHHHHHHT------TSCHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             599999999999990--7--9999999997------98898999999999998089999999999


No 112
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=97.00  E-value=0.00044  Score=44.83  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             EEEECCCHH-----HH---HHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCC--CHHHHHHHHHHC-
Q ss_conf             689709899-----99---99999999789889998285899999982-8996799990078966--217999863101-
Q gi|254780526|r    2 FVLIDDRAL-----VK---DGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKG--EKVLELPRIIRA-   69 (223)
Q Consensus         2 ILiVeDd~~-----~~---~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~--~~g~~l~~~lr~-   69 (223)
                      +||||++..     ..   ..|...+++.||.|..+.+.+++...... ...+.++++++.+.++  .+..++++.+|+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (755)
T 2vyc_A            3 VLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHER   82 (755)
T ss_dssp             EEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99991555576740116899999999867918998487899999997588876899970688853213499999999973


Q ss_pred             CCCCCEECCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCC
Q ss_conf             332100002443210-00011122201000102333332100-00011122
Q gi|254780526|r   70 HSQVPLIGISDYPSL-QTTLDFFDSGVDDVVNKPIHHREILA-RVAAIYRR  118 (223)
Q Consensus        70 ~~~~pII~lt~~~~~-~~~i~~l~~GAddyl~KP~~~~eL~a-ri~a~lRr  118 (223)
                      +..+||..++..... +..-...--..+.|+-.-=+..|+++ +|.+..+|
T Consensus        83 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  133 (755)
T 2vyc_A           83 QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR  133 (755)
T ss_dssp             STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             889998999546530310789898641357761578789999999999999


No 113
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=96.99  E-value=0.00012  Score=48.42  Aligned_cols=59  Identities=22%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             332124210123443211288340089999865287657776613688999999860145677715778
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK  213 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tv  213 (223)
                      +.-.||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+.....+.+...
T Consensus         9 ~~~~Lt~rE~~vl~~~~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~Kl~v~~r~elv~~A   67 (73)
T 2krf_A            9 EQDVLTPRECLILQEVEK--G--FTNQEIADAL------HLSKRSIEYSLTSIFNKLNVGSRTEAVLIA   67 (73)
T ss_dssp             SSSSSCHHHHHHHHHHHT--T--SCHHHHHHHH------TCCHHHHHHHHHHHHHHSCCSSSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             878889999999999995--8--9999984161------888999999999999980999999999999


No 114
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.89  E-value=0.00013  Score=48.24  Aligned_cols=55  Identities=22%  Similarity=0.335  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             21242101234432112883400899998652876577766136889999998601456777157
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD  211 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~  211 (223)
                      ..||++|.++|.+++.  |  .|..+|++.+      .++.+||+.|+.++++||+.....+++.
T Consensus       196 ~~Ls~re~~il~~~~~--G--~~~~eia~~l------~is~~tv~~h~~~~~~kl~~~~~~~~~~  250 (258)
T 3clo_A          196 NILSEREKEILRCIRK--G--LSSKEIAATL------YISVNTVNRHRQNILEKLSVGNSIEACR  250 (258)
T ss_dssp             TSSCHHHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999899999999985--9--9999999894------9999999999999999858999999999


No 115
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.89  E-value=0.0001  Score=48.86  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             212421012344321128834008999986528765777661368899999986014567771577
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS  212 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t  212 (223)
                      -.||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+.....+++.-
T Consensus        33 ~~LT~rE~~vl~ll~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~KL~v~~~~elv~~   88 (99)
T 1p4w_A           33 KRLSPKESEVLRLFAE--G--FLVTEIAKKL------NRSIKTISSQKKSAMMKLGVDNDIALLNY   88 (99)
T ss_dssp             SSCCHHHHHHHHHHHH--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9989999999999993--8--9999997772------99899999999999998099999999999


No 116
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=96.79  E-value=0.00014  Score=47.93  Aligned_cols=53  Identities=28%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             124210123443211288340089999865287657776613688999999860145677715
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV  210 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I  210 (223)
                      .||++|.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+...-.+.+
T Consensus        29 ~LT~rE~evl~ll~~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Kl~v~~r~elv   81 (91)
T 2rnj_A           29 MLTEREMEILLLIAK--G--YSNQEIASAS------HITIKTVKTHVSNILSKLEVQDRTQAV   81 (91)
T ss_dssp             GCCSHHHHHHHHHHT--T--CCTTHHHHHH------TCCHHHHHHHHHHHHHHTTCCSSHHHH
T ss_pred             CCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             179999999999992--8--9999999997------889999999999999990999999999


No 117
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=96.45  E-value=0.0043  Score=38.60  Aligned_cols=19  Identities=5%  Similarity=0.249  Sum_probs=13.1

Q ss_pred             HHCCCCCCCHHHHHHHHHC
Q ss_conf             2112883400899998652
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIY  178 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iw  178 (223)
                      +....+..++|.++...+.
T Consensus       225 ~~~~~~~~~~r~~l~~~ll  243 (321)
T 1bia_A          225 TLQEAGINLDRNTLAAMLI  243 (321)
T ss_dssp             CTTTTTCCCCHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHH
T ss_conf             7876276547677999999


No 118
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=96.17  E-value=0.00072  Score=43.50  Aligned_cols=57  Identities=21%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCE
Q ss_conf             1012344321128834008999986528765777661368899999986014567771577868630
Q gi|254780526|r  152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY  218 (223)
Q Consensus       152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY  218 (223)
                      ||.++|.++++  |  .|..+|++.+      .++.+||+.|++++++||+.....+.+.-.+..|+
T Consensus         2 RE~evl~ll~~--G--~s~~eIA~~l------~iS~~TV~~h~~~i~~Klgv~~r~elv~~a~~~gl   58 (61)
T 2jpc_A            2 RERQVLKLIDE--G--YTNHGISEKL------HISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL   58 (61)
T ss_dssp             HHHHHHHHHHT--S--CCSHHHHHHT------CSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             79999999982--7--9999999896------98999999999999988199999999999999649


No 119
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1}
Probab=94.72  E-value=0.048  Score=31.99  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--CCCEECCCC
Q ss_conf             0989999999999997898899982---85899999982899679999007896621799986310133--210000244
Q gi|254780526|r    6 DDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGISD   80 (223)
Q Consensus         6 eDd~~~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~--~~pII~lt~   80 (223)
                      |.+..=...+...|+..||.|.-..   ..+..........+|++.+=..+.......-++.+.+|+..  ++||+ +.+
T Consensus        29 D~HdiG~~~va~~l~~~G~eV~~LG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~L~~~g~~~i~i~-vGG  107 (161)
T 2yxb_A           29 DGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV-LGG  107 (161)
T ss_dssp             SSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEE
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE-EEC
T ss_conf             6247889999999997898899789778999999999866998999855766448999999999997599998799-966


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             321000011122201000102333332100000111
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
                      .-..++.-...+.|+|.+...-.+..+.+..++.++
T Consensus       108 ~~~~~d~~~l~~~Gvd~vF~pgt~~~e~v~~l~~~~  143 (161)
T 2yxb_A          108 TIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA  143 (161)
T ss_dssp             CCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf             879888999997798888499899999999999999


No 120
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=93.63  E-value=0.12  Score=29.51  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCC--CEEEC
Q ss_conf             3443211288340089999865287657776613688999999860145677715778686--30313
Q gi|254780526|r  156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL--GYSID  221 (223)
Q Consensus       156 lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l~  221 (223)
                      +|.+|+.+++..+|..+|++.+      .++..    +++++-++|...   ..|.+++|.  ||+|.
T Consensus        17 ~L~~La~~~~~~~ss~~IA~~~------~i~~~----~l~kil~~L~~a---Glv~s~rG~~GGy~La   71 (162)
T 3k69_A           17 SILYLDAHRDSKVASRELAQSL------HLNPV----MIRNILSVLHKH---GYLTGTVGKNGGYQLD   71 (162)
T ss_dssp             HHHHHHTTTTSCBCHHHHHHHH------TSCGG----GTHHHHHHHHHT---TSSEEECSTTCEEECC
T ss_pred             HHHHHHHCCCCCCCHHHHHHHH------CCCHH----HHHHHHHHHHHC---CCEEECCCCCCCCCCC
T ss_conf             9999983899866699999888------90999----999999999647---9678348899974002


No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=92.65  E-value=0.5  Score=25.58  Aligned_cols=101  Identities=10%  Similarity=0.004  Sum_probs=63.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEE--E-CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCCC
Q ss_conf             098999999999999789889998--2-8589999998289967999900789662179998631013-32100002443
Q gi|254780526|r    6 DDRALVKDGYIALFGDDGVSLEGF--N-SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY   81 (223)
Q Consensus         6 eDd~~~~~~l~~~L~~~g~~v~~~--~-~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~~   81 (223)
                      |-+..=...+...|+..||.|.-.  + ..+..........||++.+=..+...-..--++++.+|+. +++||++=.+-
T Consensus       134 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~i~~~v~~~~~d~vglS~~l~~~l~~~~~~i~~l~~~~~~~~iivGGa~  213 (258)
T 2i2x_B          134 DVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGA  213 (258)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTT
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             80178999999999987993897899899999999999829998999415567679999999999974999948988987


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             2100001112220100010233333210
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREIL  109 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~  109 (223)
                      -+.+   -+=+.|||.|-.-+++.-++.
T Consensus       214 ~~~~---~a~~~gaD~~a~da~~av~~a  238 (258)
T 2i2x_B          214 VNQD---FVSQFALGVYGEEAADAPKIA  238 (258)
T ss_dssp             CCHH---HHHTSTTEEECSSTTHHHHHH
T ss_pred             CCHH---HHHHHCCCEECCCHHHHHHHH
T ss_conf             9999---999829884767999999999


No 122
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=92.12  E-value=0.17  Score=28.61  Aligned_cols=18  Identities=11%  Similarity=0.063  Sum_probs=6.6

Q ss_pred             HHHCCCCCCCHHHHHHHH
Q ss_conf             321128834008999986
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSA  176 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~  176 (223)
                      +|+.++++.+|-++|++.
T Consensus        22 ~La~~~~~~~s~~~ia~~   39 (149)
T 1ylf_A           22 ILKNNPSSLCTSDYMAES   39 (149)
T ss_dssp             HHHHSCGGGCCHHHHHHH
T ss_pred             HHHHCCCCCCCHHHHHHH
T ss_conf             999689986669999987


No 123
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=90.30  E-value=0.2  Score=28.10  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=59.4

Q ss_pred             HHHHHHCCCEEEEEECHHH--HHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             9999978988999828589--999998289967999900789---66217999863101332100002443210000111
Q gi|254780526|r   16 IALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF   90 (223)
Q Consensus        16 ~~~L~~~g~~v~~~~~~~~--~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~   90 (223)
                      +..|-..||.|-.+.+.+.  +..+......-  ++-+.-|-   .|...-..++.++++.++|||+=.+-....+...+
T Consensus       119 ae~Lv~eGF~VlpY~~~D~v~akrLed~Gc~a--vMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGIG~pSdAa~A  196 (264)
T 1xm3_A          119 SEQLLEEGFIVLPYTSDDVVLARKLEELGVHA--IMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYA  196 (264)
T ss_dssp             HHHHHHTTCCEEEEECSCHHHHHHHHHHTCSC--BEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHH
T ss_pred             HHHHHHCCCEEEEEECCCHHHHHHHHHCCCEE--EEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
T ss_conf             99999789879996078989999999769919--9851340136877679899999996689888984798988899999


Q ss_pred             CCCCCEEEEECC
Q ss_conf             222010001023
Q gi|254780526|r   91 FDSGVDDVVNKP  102 (223)
Q Consensus        91 l~~GAddyl~KP  102 (223)
                      +|.|+|..|.-.
T Consensus       197 MElG~DaVLvNT  208 (264)
T 1xm3_A          197 MELGADGVLLNT  208 (264)
T ss_dssp             HHTTCSEEEESH
T ss_pred             HHCCCCEEEECH
T ss_conf             974588998554


No 124
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=90.27  E-value=0.35  Score=26.61  Aligned_cols=88  Identities=14%  Similarity=0.005  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECCCCCCCC
Q ss_conf             99999999997898899982---8589999998289967999900789662179998631013---32100002443210
Q gi|254780526|r   11 VKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSL   84 (223)
Q Consensus        11 ~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~lt~~~~~   84 (223)
                      =...+...|+..||.|.-..   ..+.........+||++.+=..++..-.+.-++++.+|+.   +++||++=.+--+ 
T Consensus       104 G~~~va~~l~~~Gw~V~~LG~~vp~e~l~~~~~~~~~~~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~-  182 (210)
T 1y80_A          104 GKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS-  182 (210)
T ss_dssp             HHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC-
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-
T ss_conf             9999999999889848856789999999999985299999998435677999999999999848999996999892089-


Q ss_pred             CCCCCCCCCCCEEEEEC
Q ss_conf             00011122201000102
Q gi|254780526|r   85 QTTLDFFDSGVDDVVNK  101 (223)
Q Consensus        85 ~~~i~~l~~GAddyl~K  101 (223)
                      ++  .+-+.|||.|-.-
T Consensus       183 ~~--~a~~~GaD~~a~d  197 (210)
T 1y80_A          183 QD--FADEIGADGYAPD  197 (210)
T ss_dssp             HH--HHHHHTCSEECSS
T ss_pred             HH--HHHHHCCCEEECC
T ss_conf             99--9999399889789


No 125
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=89.89  E-value=0.56  Score=25.31  Aligned_cols=63  Identities=21%  Similarity=0.198  Sum_probs=39.2

Q ss_pred             CCCCCC-C--HHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCC--CEEE
Q ss_conf             212421-0--1234432112-88340089999865287657776613688999999860145677715778686--3031
Q gi|254780526|r  147 FPLPRR-E--RRILEYLMAN-RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL--GYSI  220 (223)
Q Consensus       147 i~LT~~-E--~~lL~~L~~~-~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l  220 (223)
                      .+||.+ +  ..+|-+|+.+ .++++|-.+|++..      .++.    .++.++-++|...   .+|++.||.  ||+|
T Consensus        20 Mkls~k~~YAlr~L~~LA~~~~~~~vs~~eIAe~~------~ip~----~~L~kIl~~L~ka---Glv~S~rG~~GGy~L   86 (159)
T 3lwf_A           20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDK------NLSE----HYLEQLIGPLRNA---GIVKSIRGAHGGYVL   86 (159)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHH------TCCH----HHHHHHHHHHHHT---TSEEEECSTTCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHH------CCCH----HHHHHHHHHHHCC---CEEEECCCCCCCCEE
T ss_conf             87876586999999999808899819599999878------9099----9999999998327---938836888888545


Q ss_pred             CC
Q ss_conf             38
Q gi|254780526|r  221 DW  222 (223)
Q Consensus       221 ~~  222 (223)
                      ..
T Consensus        87 ak   88 (159)
T 3lwf_A           87 NG   88 (159)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             56


No 126
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=89.50  E-value=0.34  Score=26.64  Aligned_cols=53  Identities=19%  Similarity=0.252  Sum_probs=40.6

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             33212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +...||..|.+|+.+|-.+ |.++|-.+|.+.+-.  +...+.+||.+.+.||.+|
T Consensus         3 k~~~L~~~E~~IM~ilW~~-~~~~t~~eI~~~l~~--~~~~~~sTV~t~L~rL~~K   55 (138)
T 2g9w_A            3 KLTRLGDLERAVMDHLWSR-TEPQTVRQVHEALSA--RRDLAYTTVMAVLQRLAKK   55 (138)
T ss_dssp             CGGGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTT--TCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHC
T ss_conf             6687889999999999848-999279999998710--4799487999999999977


No 127
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.18  E-value=0.65  Score=24.86  Aligned_cols=108  Identities=15%  Similarity=0.061  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEE---ECHHHHHHHHHHCCCCEEEEEEECCCCCCHHH-HHHHHHHCC--CCCCEECCC
Q ss_conf             098999999999999789889998---28589999998289967999900789662179-998631013--321000024
Q gi|254780526|r    6 DDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-ELPRIIRAH--SQVPLIGIS   79 (223)
Q Consensus         6 eDd~~~~~~l~~~L~~~g~~v~~~---~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~-~l~~~lr~~--~~~pII~lt   79 (223)
                      |-+..=...+...|+..||.|.-.   ...+..........+|++.+=..+.. ....+ ++.+.+|+.  .++||++=.
T Consensus        14 D~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~iS~~~~~-~~~~~~~~i~~L~~~~~~~v~iivGG   92 (137)
T 1ccw_A           14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ-GEIDCKGLRQKCDEAGLEGILLYVGG   92 (137)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST-HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             74589999999999987987997786669999999999839987887611344-55779999999997499999799978


Q ss_pred             CC----CC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             43----21-0000111222010001023333321000001
Q gi|254780526|r   80 DY----PS-LQTTLDFFDSGVDDVVNKPIHHREILARVAA  114 (223)
Q Consensus        80 ~~----~~-~~~~i~~l~~GAddyl~KP~~~~eL~ari~a  114 (223)
                      +-    .. .+..-+..+.|+|......-++++.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~l~~~G~~~vf~~gt~~~~~~~~i~~  132 (137)
T 1ccw_A           93 NIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK  132 (137)
T ss_dssp             SCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
T ss_conf             8788744418899999975988897998899999999999


No 128
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.84  E-value=0.28  Score=27.23  Aligned_cols=54  Identities=15%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2233212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +...+.||..|.+++.+|=++.+  ++-.+|.+.+-.  ....+..||.+.+.||-+|
T Consensus        27 ~e~~~~LS~~E~~VM~iLW~~~~--~t~~eI~~~l~~--~~~~~~sTv~T~L~RL~~K   80 (99)
T 2k4b_A           27 NEVEFNVSNAELIVMRVIWSLGE--ARVDEIYAQIPQ--ELEWSLATVKTLLGRLVKK   80 (99)
T ss_dssp             ----CCCCCSCSHHHHHHHHHSC--EEHHHHHHTCCG--GGCCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHHH--CCCCCHHHHHHHHHHHHHC
T ss_conf             76216999999999999990799--589999999850--1386556699999999988


No 129
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.64  E-value=0.7  Score=24.68  Aligned_cols=84  Identities=14%  Similarity=0.061  Sum_probs=57.0

Q ss_pred             HHHHHHCCCEEEEEECHHHH--HHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             99999789889998285899--99998289967999900789---66217999863101332100002443210000111
Q gi|254780526|r   16 IALFGDDGVSLEGFNSLEFE--EWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF   90 (223)
Q Consensus        16 ~~~L~~~g~~v~~~~~~~~~--~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~   90 (223)
                      ...|-..||.|-.+.+.+..  ..+....  -..++-+.-|.   .|......++.++++.++|+|+=.+-....+...+
T Consensus       128 a~~Lvk~gF~VlpY~~dD~~~ak~L~d~G--c~avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vpviVDAGIG~pSdAa~a  205 (265)
T 1wv2_A          128 AEQLVKDGFDVMVYTSDDPIIARQLAEIG--CIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIA  205 (265)
T ss_dssp             HHHHHTTTCEEEEEECSCHHHHHHHHHSC--CSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHH
T ss_pred             HHHHHHCCCEEEECCCCCHHHHHHHHHCC--CEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf             99999789779624784699999987549--6375448321011246367789999985389529974688978899999


Q ss_pred             CCCCCEEEEEC
Q ss_conf             22201000102
Q gi|254780526|r   91 FDSGVDDVVNK  101 (223)
Q Consensus        91 l~~GAddyl~K  101 (223)
                      ++.|+|..+.-
T Consensus       206 MElG~DaVLvN  216 (265)
T 1wv2_A          206 MELGCEAVLMN  216 (265)
T ss_dssp             HHHTCSEEEES
T ss_pred             HHCCCCEEEEC
T ss_conf             97148889853


No 130
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=87.85  E-value=0.32  Score=26.78  Aligned_cols=46  Identities=11%  Similarity=0.260  Sum_probs=36.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             21242101234432112883400899998652876577766136889999998
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ..||+.++.+|..|..++| ++|..+|++.+      ..+..||..++.+|-+
T Consensus        17 ~gLs~~~~~iL~~L~~~~~-~~t~~eia~~~------~~~~~tvs~~l~~L~~   62 (109)
T 2d1h_A           17 YKITDTDVAVLLKMVEIEK-PITSEELADIF------KLSKTTVENSLKKLIE   62 (109)
T ss_dssp             HTCCHHHHHHHHHHHHHCS-CEEHHHHHHHH------TCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC-CCCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             6959999999999997598-98999999998------9788589999999998


No 131
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.72  E-value=0.27  Score=27.29  Aligned_cols=55  Identities=13%  Similarity=0.256  Sum_probs=41.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22332124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      .++...||..|++++.+|-+++  .+|-.+|.+.+-.  +...+.+|+.+.+.||-+|=
T Consensus         2 ~~k~~~lt~~E~~VM~~LW~~~--~~t~~ei~~~l~~--~~~~~~~Tv~t~L~RL~~KG   56 (123)
T 1okr_A            2 DNKTYEISSAEWEVMNIIWMKK--YASANNIIEEIQM--QKDWSPKTIRTLITRLYKKG   56 (123)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHS--SEEHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCC
T ss_conf             9878998999999999998379--9799999999751--23875424999999999889


No 132
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=86.66  E-value=0.46  Score=25.85  Aligned_cols=53  Identities=17%  Similarity=0.311  Sum_probs=41.4

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             233212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      .+.+.||+.|++++.+|=+++  .+|-.+|.+.+-.  ....+.+||.+.+.||-+|
T Consensus         3 ~k~~~Lt~~E~~VM~~lW~~~--~~t~~ei~~~l~~--~~~~~~~Tv~t~L~RL~~K   55 (126)
T 1sd4_A            3 NKQVEISMAEWDVMNIIWDKK--SVSANEIVVEIQK--YKEVSDKTIRTLITRLYKK   55 (126)
T ss_dssp             --CCCCCHHHHHHHHHHHHSS--SEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHCC--CCCCCHHHHHHHHHHHHHC
T ss_conf             667998999999999998689--9779999998533--4688560699999999978


No 133
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.69  E-value=1.9  Score=21.99  Aligned_cols=99  Identities=14%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHC---CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECC
Q ss_conf             689709899999999999978---98899982858999999828996799990078966217999863101332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD---GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~---g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~l   78 (223)
                      ++|.|+|....+.|..+|...   .+.+.+|++.+.........++|+.+++-+....  .       .+.....++.++
T Consensus        24 l~i~d~d~~y~~~L~~~l~~~~~~~~~~~~fs~~e~l~~~~~~~~~dvlli~~~~~~~--~-------~~~~~~~~~~~l   94 (373)
T 3fkq_A           24 VALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNID--K-------SEFKRNCGLAYF   94 (373)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCCCC--G-------GGGCSSCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHH--H-------HHHHHCCCEEEE
T ss_conf             9999677999999999985532784499994789999999860799899988865654--5-------543203662786


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             4432100001112220100010233333210000011
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI  115 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~  115 (223)
                      +.....+..      +.-.++.|+-+.++++..|.+.
T Consensus        95 ~~~~~~~~~------~~~~~i~Kyq~~~~i~~~i~~~  125 (373)
T 3fkq_A           95 TGTPGIELI------KDEIAICKYQRVDVIFKQILGV  125 (373)
T ss_dssp             ESCTTCCEE------TTEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCC------CCCCCHHCCCCHHHHHHHHHHH
T ss_conf             167885433------4544201266688999999999


No 134
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=85.43  E-value=1.3  Score=23.08  Aligned_cols=93  Identities=8%  Similarity=-0.164  Sum_probs=46.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             68970989999999999997898899982858-999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      +++||.|+.-.......+...|+.+...+..+ +.+.-....+.+.+++..  + .+...+..+...|+ +++++|+.-+
T Consensus        29 v~vId~~~e~~~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~t--~-~d~~n~~~~l~~r~~~~~~~iia~~  105 (153)
T 1id1_A           29 VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS--D-NDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS--S-CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEECC--C-CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             899978867789999985438987999167999999757988338999986--9-8799999999999978998399998


Q ss_pred             CCCCCCCCCCCCCCCCEEEE
Q ss_conf             43210000111222010001
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVV   99 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl   99 (223)
                      ...  ++.-..-.+|||.-+
T Consensus       106 ~~~--~~~~~l~~~G~d~vi  123 (153)
T 1id1_A          106 SDS--KNLNKIKMVHPDIIL  123 (153)
T ss_dssp             SSG--GGHHHHHTTCCSEEE
T ss_pred             CCH--HHHHHHHHCCCCEEE
T ss_conf             898--999999977989999


No 135
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=84.98  E-value=1  Score=23.66  Aligned_cols=96  Identities=9%  Similarity=-0.004  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCC-C-CHHHHHHHHHHCC---CCCCEEC
Q ss_conf             0989999999999997898899982---85899999982899679999007896-6-2179998631013---3210000
Q gi|254780526|r    6 DDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGK-G-EKVLELPRIIRAH---SQVPLIG   77 (223)
Q Consensus         6 eDd~~~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~-~-~~g~~l~~~lr~~---~~~pII~   77 (223)
                      |-+..=...+...|+..||.|.-..   ..+.........+||++.+-....++ . ...-++.+.+|+.   +++||++
T Consensus       103 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~~~~~~~~~~~d~v~ls~S~~~~~~~~~~~~~i~~lr~~~~~~~v~v~v  182 (215)
T 3ezx_A          103 DIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMF  182 (215)
T ss_dssp             CCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEE
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             88889999999999977996998889999999999999739981489985665433699999999999808889995998


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             244321000011122201000102333
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIH  104 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~  104 (223)
                      =.+.-+ ++  -+=+.|||.|-.-+.+
T Consensus       183 GGa~~~-~~--~a~~~GAD~~a~da~~  206 (215)
T 3ezx_A          183 GGAPVS-DK--WIEEIGADATAENAAE  206 (215)
T ss_dssp             ESSSCC-HH--HHHHHTCCBCCSSHHH
T ss_pred             ECCCCC-HH--HHHHHCCCEECCCHHH
T ss_conf             890279-99--9998398878389999


No 136
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=84.93  E-value=0.46  Score=25.81  Aligned_cols=51  Identities=8%  Similarity=0.177  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             2124210123443211288340089999865287657776613688999999860
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL  201 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL  201 (223)
                      -+||..|++++..|=.+.  +++-.+|.+.+-+.  ...+.+||.+.+.||-+|=
T Consensus         5 ~~Lt~~E~~VM~~lW~~~--~~t~~ei~~~l~~~--~~~~~sTv~T~L~RL~~Kg   55 (82)
T 1p6r_A            5 PQISDAELEVMKVIWKHS--SINTNEVIKELSKT--STWSPKTIQTMLLRLIKKG   55 (82)
T ss_dssp             CCCCHHHHHHHHHHHTSS--SEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCC
T ss_conf             999999999999998179--97899999986023--6972857999999999889


No 137
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.54  E-value=0.49  Score=25.65  Aligned_cols=50  Identities=18%  Similarity=0.291  Sum_probs=39.8

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             33212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +...||..||.+|..|..++|..++-.+|++.+      ..+..++-..+.+|-+|
T Consensus        31 ~~~~lt~~q~~iL~~l~~~~~~~~t~~ela~~l------~~~~~~vs~~l~~Le~~   80 (127)
T 2frh_A           31 KEFSISFEEFAVLTYISENKEKEYYLKDIINHL------NYKQPQVVKAVKILSQE   80 (127)
T ss_dssp             HTTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHS------SSHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             885979999999999982899987899999997------98873699999999978


No 138
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.95  E-value=0.94  Score=23.87  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             33212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +...||..||.+|.+|..+++..++-.+|++.+      ..+..++-..|.+|-+|
T Consensus       152 k~~~Ls~~e~~vL~~L~~~~~~~~~~~~la~~l------~~~~~~vs~~i~~L~~~  201 (250)
T 1p4x_A          152 KHLTLSFVEFTILAIITSQNKNIVLLKDLIETI------HHKYPQTVRALNNLKKQ  201 (250)
T ss_dssp             HHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHS------SSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             874989999999999986999967699999997------88850699999999988


No 139
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=81.64  E-value=2.1  Score=21.69  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCC
Q ss_conf             2233212421012344321128834008999986528
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG  179 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg  179 (223)
                      ......||+.-.+.|...+-  .++|+|.+|. .+.|
T Consensus        92 ~~~~~~LS~aalETLAIIAY--~QPiTr~eIe-~IRG  125 (219)
T 2z99_A           92 DGARTKLTRAALETLAVVAY--RQPVTRARVS-AVRG  125 (219)
T ss_dssp             HHHSCCCCHHHHHHHHHHHH--HCSEEHHHHH-HHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHH--CCCCCHHHHH-HHCC
T ss_conf             67667678999999999997--3984799999-8739


No 140
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=81.53  E-value=1.1  Score=23.48  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=40.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             212421012344321128834008999986528765777661368899999986014567
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      -.|++++..++.+-.-. |  .|..||++.+      .++..||.++++|-|+||+....
T Consensus        14 ~~Lp~~~r~v~~l~~~~-g--~s~~EIA~~l------gis~~tvk~~l~Ra~~~Lr~~l~   64 (70)
T 2o8x_A           14 ADLTTDQREALLLTQLL-G--LSYADAAAVC------GCPVGTIRSRVARARDALLADAE   64 (70)
T ss_dssp             TSSCHHHHHHHHHHHTS-C--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHHC---
T ss_pred             HCCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             86999999999989990-9--9999999998------97999999999999999999861


No 141
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=80.00  E-value=1.2  Score=23.26  Aligned_cols=46  Identities=17%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             2421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ||+++..++.+-.-. |  .|..+|++.+      .++..||.++++|-|++|+.
T Consensus        26 Lpe~qR~v~~l~~~e-~--ls~~EIA~~l------giS~~aV~~~l~RA~~~L~~   71 (113)
T 1xsv_A           26 LTNKQRNYLELFYLE-D--YSLSEIADTF------NVSRQAVYDNIRRTGDLVED   71 (113)
T ss_dssp             SCHHHHHHHHHHHTS-C--CCHHHHHHHT------TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999991-9--9999999998------96999999999999999999


No 142
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=79.97  E-value=1.3  Score=22.91  Aligned_cols=50  Identities=20%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ...||..++.+|.+|..+++..+|-.+|++.+.      .+..+    ++|+-++|...+
T Consensus        29 ~~glt~~q~~vL~~l~~~~~~~~t~~~La~~l~------i~~~~----vs~~v~~L~~~g   78 (141)
T 3bro_A           29 KYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFS------IKSST----ATVLLQRMEIKK   78 (141)
T ss_dssp             TTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT------CCHHH----HHHHHHHHHHTT
T ss_pred             HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC------CCHHH----HHHHHHHHHHHH
T ss_conf             869899999999999848999959999999989------78858----999999998877


No 143
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.48  E-value=1  Score=23.61  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=17.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             22222222222222222223321242101234432112883
Q gi|254780526|r  126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK  166 (223)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~  166 (223)
                      +.-|++.+......+..+.-.+.+..-|. .++.|....+.
T Consensus       125 I~~GDiviv~~~~~~~~GdIvv~~~~~e~-t~Kr~~~~~~~  164 (202)
T 1jhf_A          125 IMDGDLLAVHKTQDVRNGQVVVARIDDEV-TVKRLKKQGNK  164 (202)
T ss_dssp             CCTTCEEEEEECSCCCTTSEEEEEETTEE-EEEEEEEETTE
T ss_pred             CCCCCEEEEECCCCCCCCCEEEEEECCEE-EEEEEEEECCE
T ss_conf             47983999972443237978999989957-89999998999


No 144
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=79.48  E-value=1.7  Score=22.22  Aligned_cols=91  Identities=11%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             68970989999999999997898899982858-999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      +++||.|+...+.    ++..|+.|...+..+ +.+......+.+.+++.+  + .....+.++...|+ .++++|++-+
T Consensus        30 vvvID~d~~~v~~----l~~~g~~vi~GDat~~~~L~~Agi~~A~~vIia~--~-d~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           30 MVVLDHDPDHIET----LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI--D-DPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEEEECCHHHHHH----HHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC--S-SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEEECCHHHHHH----HHHCCCCEEEECCCCHHHHHHCCCCCCCEEEEEE--C-CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999899999999----9977990999638999999856977599999971--9-8899999999999978998399997


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             4321000011122201000102
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNK  101 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~K  101 (223)
                      .  +.++.-...++|||..+.-
T Consensus       103 ~--~~~~~~~L~~~Gad~Vi~e  122 (413)
T 3l9w_A          103 R--DVDHYIRLRQAGVEKPERE  122 (413)
T ss_dssp             S--SHHHHHHHHHTTCSSCEET
T ss_pred             C--CHHHHHHHHHCCCCEEECC
T ss_conf             7--9999999997798999884


No 145
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=78.77  E-value=3.4  Score=20.39  Aligned_cols=81  Identities=15%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             CCCEEEEEECHH-----HHH-------HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
Q ss_conf             898899982858-----999-------99982899679999007896621799986310133210000244321000011
Q gi|254780526|r   22 DGVSLEGFNSLE-----FEE-------WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD   89 (223)
Q Consensus        22 ~g~~v~~~~~~~-----~~~-------~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~   89 (223)
                      .++.|.+++++.     ..+       .....+.||++++..  |-+..-|-.-+|++=+...+|.|++|....... ..
T Consensus        31 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~~~~pDf~I~is--PN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~K~-kd  107 (283)
T 1qv9_A           31 EDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGG--PNPAAPGPSKAREMLADSEYPAVIIGDAPGLKV-KD  107 (283)
T ss_dssp             SSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEEC--SCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGG-HH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHH-HH
T ss_conf             686499952677779789999998877788740899899978--998899956799999747998799827863446-89


Q ss_pred             CCCCCCEEEEECCCCC
Q ss_conf             1222010001023333
Q gi|254780526|r   90 FFDSGVDDVVNKPIHH  105 (223)
Q Consensus        90 ~l~~GAddyl~KP~~~  105 (223)
                      .++...-+||.-|.|+
T Consensus       108 ~l~~~g~GYIivk~Dp  123 (283)
T 1qv9_A          108 EMEEQGLGYILVKPDA  123 (283)
T ss_dssp             HHHHTTCEEEEETTSC
T ss_pred             HHHHCCCCEEEEECCC
T ss_conf             9986598479983676


No 146
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=78.11  E-value=2.8  Score=20.84  Aligned_cols=34  Identities=24%  Similarity=0.132  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
Q ss_conf             2332124210123443211288340089999865287
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL  180 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~  180 (223)
                      .....||+...+.|...+-  +++++|.+|.+ +.|.
T Consensus        87 ~~~~~LS~aalEtLAiIAy--~QPitr~eI~~-iRGv  120 (162)
T 1t6s_A           87 VIQRRLSRSMLEVLAVVAW--HQPVTKGEIQQ-IRGA  120 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HCSEEHHHHHH-HHTC
T ss_pred             CCCCCCCHHHHHHHHHHHH--CCCCCHHHHHH-HHCC
T ss_conf             4446569999999999996--29958999999-9788


No 147
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=76.79  E-value=3.9  Score=20.00  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             68970989999999999997898899982858-999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
                      +++||.|+...+.    +.+.|+.+..-+..+ ..+......+.+.+++.  ++ .+...+.++...|+ .++++|+.-+
T Consensus        33 vvvId~d~~~~~~----~~~~g~~~i~GD~~~~~~L~~a~i~~a~~vi~~--~~-~d~~n~~~~~~~r~l~p~~~iiar~  105 (140)
T 3fwz_A           33 LVVIETSRTRVDE----LRERGVRAVLGNAANEEIMQLAHLECAKWLILT--IP-NGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEEESCHHHHHH----HHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC--CS-CHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEEECCCHHHHH----HHHCCCEEEECCCCCHHHHHHHCHHHHCEEEEC--CC-CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999888077501----565396588515899999997274451899998--79-8899999999999978998499998


Q ss_pred             CCCCCCCCCCCCCCCCEEEEE
Q ss_conf             432100001112220100010
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVN  100 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~  100 (223)
                      .  +.++.-...++|||..+.
T Consensus       106 ~--~~~~~~~l~~~G~~~vi~  124 (140)
T 3fwz_A          106 H--YDDEVAYITERGANQVVM  124 (140)
T ss_dssp             S--SHHHHHHHHHTTCSEEEE
T ss_pred             C--CHHHHHHHHHCCCCEEEC
T ss_conf             7--999999999779899998


No 148
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=76.73  E-value=1.4  Score=22.81  Aligned_cols=16  Identities=13%  Similarity=-0.052  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHCCCE
Q ss_conf             9999999999978988
Q gi|254780526|r   10 LVKDGYIALFGDDGVS   25 (223)
Q Consensus        10 ~~~~~l~~~L~~~g~~   25 (223)
                      .+.+.+..+.++.|+.
T Consensus         9 ~il~~I~~~~~~~G~~   24 (196)
T 3k2z_A            9 KVLLFIEEFIEKNGYP   24 (196)
T ss_dssp             HHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999984989


No 149
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=75.39  E-value=4.2  Score=19.77  Aligned_cols=13  Identities=0%  Similarity=0.156  Sum_probs=8.3

Q ss_pred             CCCCEEEEECCCC
Q ss_conf             2201000102333
Q gi|254780526|r   92 DSGVDDVVNKPIH  104 (223)
Q Consensus        92 ~~GAddyl~KP~~  104 (223)
                      -.|||-.-+.||+
T Consensus       356 ~GGadsl~~~~~d  368 (727)
T 1req_A          356 QGHTQSLHTNSLD  368 (727)
T ss_dssp             HTTCSEEECCCTT
T ss_pred             HCCCCEEEECCCH
T ss_conf             8048768724804


No 150
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=75.14  E-value=1.8  Score=22.15  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             2421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ||++++.++.+..-. |  .|..+|++.+      .++..||.++++|=|++|+.
T Consensus        23 L~~~qR~vi~L~~~~-~--ls~~EIA~~l------gis~~~V~~~l~Ra~~~L~e   68 (113)
T 1s7o_A           23 LTDKQMNYIELYYAD-D--YSLAEIADEF------GVSRQAVYDNIKRTEKILET   68 (113)
T ss_dssp             SCHHHHHHHHHHHHT-C--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-H--HHHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999997-3--1299999998------97999999999999999975


No 151
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=74.92  E-value=4.3  Score=19.69  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             999999828996799990078966-217999863101332100002443210000111222010001023
Q gi|254780526|r   34 FEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        34 ~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
                      .+..+.....-.+.++|++-...+ ..-+++++.+.+...+|+.+=.+-.+.++.-+.|++||+-.+.-.
T Consensus        36 ~a~~~~~~g~dei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kvii~S  105 (252)
T 1ka9_F           36 AARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNS  105 (252)
T ss_dssp             HHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             9999998699989999532542334028999999875148745773682678887899873898999884


No 152
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=74.18  E-value=4.5  Score=19.57  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEEC--------------CCCCCHHHHHHHHHHCCCCCCEECCC
Q ss_conf             99999978988999-8285899999982899679999007--------------89662179998631013321000024
Q gi|254780526|r   15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL--------------IGKGEKVLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus        15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l--------------~~~~~~g~~l~~~lr~~~~~pII~lt   79 (223)
                      +...+...|..|.. +.+.+.+... ...-+|.+++.-.-              ..+....+.++.++++..++|||.=.
T Consensus       137 ~i~~lk~~g~~v~~~v~s~~~a~~a-~~~g~D~iv~qG~eAGGH~g~~~~~~~~~~~~~~~~~l~~~v~~~~~iPviaAG  215 (369)
T 3bw2_A          137 VIARLRRAGTLTLVTATTPEEARAV-EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAG  215 (369)
T ss_dssp             HHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEES
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHH-HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf             9999997695598505889999999-981898444105556778887766443444441088899999975699789624


Q ss_pred             CCCCCCCCCCCCCCCCEEEEE
Q ss_conf             432100001112220100010
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVN  100 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~  100 (223)
                      +-.+..+..++|.+|||....
T Consensus       216 GI~~g~~iaaaLalGAdgV~~  236 (369)
T 3bw2_A          216 GIMRGGQIAAVLAAGADAAQL  236 (369)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCCCHHHHHHHHHCCCCEEEE
T ss_conf             777999999999539787998


No 153
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=73.91  E-value=2.4  Score=21.34  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             12421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      .|++++..++.+..-. |  .|..+|++.+      .++.+||.++++|-+++|+.
T Consensus        37 ~L~~~~r~vi~l~~~~-g--~s~~eIA~~l------gis~~tV~~~l~Ra~~~Lr~   83 (92)
T 3hug_A           37 QLSAEHRAVIQRSYYR-G--WSTAQIATDL------GIAEGTVKSRLHYAVRALRL   83 (92)
T ss_dssp             TSCHHHHHHHHHHHTS-C--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_conf             7999999999999993-9--9999999998------96999999999999999999


No 154
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=73.19  E-value=4.8  Score=19.42  Aligned_cols=77  Identities=13%  Similarity=0.045  Sum_probs=44.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCH-HHHHHHHHHCCCCCCEECCC
Q ss_conf             96897098999999999999789889998285899999982899679999007896621-79998631013321000024
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK-VLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~-g~~l~~~lr~~~~~pII~lt   79 (223)
                      ||+|||-...+...+...|+..|+.+....+....... ....+|-+++--.-..|... ...+++... ..+.|++-+.
T Consensus         2 mI~iiD~g~~ft~ni~~~l~~lG~~~~i~p~~~~~~~~-~~~~~~gv~~sgg~~~~~~~~~~~~i~~~~-~~~~PilGIC   79 (189)
T 1wl8_A            2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEI-KAMNPKGIIFSGGPSLENTGNCEKVLEHYD-EFNVPILGIC   79 (189)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHH-HHTCCSEEEECCCSCTTCCTTHHHHHHTGG-GTCSCEEEET
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHCCCEEEECCCCCCCCCCCHHHHHHHHH-HCCCCEEEEE
T ss_conf             89999799848999999999789928999699988999-831899787589987865466499999998-5599689984


No 155
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=72.82  E-value=2.5  Score=21.18  Aligned_cols=45  Identities=22%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             4210123443211288340089999865287657776613688999999860145
Q gi|254780526|r  150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK  204 (223)
Q Consensus       150 T~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~  204 (223)
                      ++.+..++.+.+.  |  .|..+|++.+      .++..+|..+++|.|+||+..
T Consensus       111 ~~~~~~~~~~~~~--g--~s~~EIA~~l------gis~~~V~~~~~Ra~~kl~~~  155 (164)
T 3mzy_A          111 SKFEKEVLTYLIR--G--YSYREIATIL------SKNLKSIDNTIQRIRKKSEEW  155 (164)
T ss_dssp             CHHHHHHHHHHTT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH
T ss_conf             6999999876562--3--8999999998------919999999999999999999


No 156
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=72.73  E-value=4.1  Score=19.85  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=40.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHH--HHHHHH--CCCCCCE
Q ss_conf             968970989999999999997898899982858-99999982899679999007896621799--986310--1332100
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLE--LPRIIR--AHSQVPL   75 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~--l~~~lr--~~~~~pI   75 (223)
                      ||||||-...+..-+..+|++.|..+.+..+.+ ....+ ....+|.+++ ..=|+...+..+  ....+.  .....||
T Consensus         3 ~~liiD~~dsft~Nl~~~l~~lG~~~~v~~~d~~~~~~~-~~~~~~gvil-sgGp~~p~~~~~~~~~~~i~~~~~~~~Pi   80 (195)
T 1qdl_B            3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGI-ERIDPDRLII-SPGPGTPEKREDIGVSLDVIKYLGKRTPI   80 (195)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHH-HHHCCSEEEE-CCCSSCTTSHHHHTTHHHHHHHHTTTSCE
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHCCCCEEEE-CCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf             899997887179999999986899279980898999999-8619897998-89999743343344308999985589988


Q ss_pred             ECCC
Q ss_conf             0024
Q gi|254780526|r   76 IGIS   79 (223)
Q Consensus        76 I~lt   79 (223)
                      +=+.
T Consensus        81 LGIC   84 (195)
T 1qdl_B           81 LGVC   84 (195)
T ss_dssp             EEET
T ss_pred             EEEC
T ss_conf             9982


No 157
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=71.92  E-value=3.2  Score=20.51  Aligned_cols=47  Identities=21%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             212421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ..||..++.+|.+|..+++..+|-.+|++.+      ..+..+    |+++-++|..
T Consensus        27 ~glt~~q~~vL~~l~~~~~~~~t~~ela~~l------~~~~~t----vs~~v~~L~~   73 (139)
T 3eco_A           27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKAL------QRTGPT----VSNLLRNLER   73 (139)
T ss_dssp             GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHH------TCCHHH----HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHH----HHHHHHHHHH
T ss_conf             6989999999999983599996999999998------968878----9999999997


No 158
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=70.56  E-value=1.4  Score=22.73  Aligned_cols=13  Identities=8%  Similarity=0.153  Sum_probs=5.8

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             8340089999865
Q gi|254780526|r  165 GKRVAKTQIFSAI  177 (223)
Q Consensus       165 g~~vsr~~l~~~i  177 (223)
                      |-+-|.+++...+
T Consensus       182 GGI~t~ed~~~al  194 (223)
T 1y0e_A          182 GNVITPDMYKRVM  194 (223)
T ss_dssp             SSCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             8989999999999


No 159
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=70.47  E-value=3  Score=20.73  Aligned_cols=58  Identities=14%  Similarity=0.171  Sum_probs=37.5

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE-EECCCCEEE
Q ss_conf             1242101234432112883400899998652876577766136889999998601456777157-786863031
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI  220 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~-tvrg~GY~l  220 (223)
                      .||..|+.+|..|.++++  .|-.+|++.+      ..+..|+    +|.-++|+..+   +|. .-|+.+|++
T Consensus       149 ~ls~~~~~iL~~L~~~~~--~s~~ela~~l------~~s~~tv----~r~l~~Le~~G---lV~r~~r~~~v~L  207 (244)
T 2wte_A          149 DYSREEMKLLNVLYETKG--TGITELAKML------DKSEKTL----INKIAELKKFG---ILTQKGKDRKVEL  207 (244)
T ss_dssp             CCCHHHHHHHHHHHHHTC--BCHHHHHHHH------TCCHHHH----HHHHHHHHHTT---SEEEETTTTEEEE
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHH----HHHHHHHHHCC---CEEEECCCCEEEE
T ss_conf             999999999999997799--8999999997------9798899----99999999889---9998378227998


No 160
>3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.99  E-value=5.6  Score=18.97  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=13.2

Q ss_pred             HHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             7999863101-332100002443210000111222010
Q gi|254780526|r   60 VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVD   96 (223)
Q Consensus        60 g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAd   96 (223)
                      .+.++...|+ +++.+|+..+...+  +.-...++|||
T Consensus       119 n~~~~~~~r~~~~~~~Iiara~~~~--~~~~L~~~Gad  154 (183)
T 3c85_A          119 NQTALEQLQRRNYKGQIAAIAEYPD--QLEGLLESGVD  154 (183)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEESSHH--HHHHHHHHTCS
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHCCCC
T ss_conf             9999999998789947999977999--99999986999


No 161
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=69.27  E-value=1.6  Score=22.47  Aligned_cols=51  Identities=20%  Similarity=0.318  Sum_probs=38.0

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             332124210123443211288340--0899998652876577766136889999998601456
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRV--AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~v--sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ..-.||+.|..+..|+.+|+..+.  |=.+|++..      .+++-|    |.|+=|||+-.+
T Consensus        15 ~~~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~------~vS~aT----I~Rf~kklGf~g   67 (111)
T 2o3f_A           15 MXHXLPPSERKLADYILAHPHXAIESTVNEISALA------NSSDAA----VIRLCXSLGLKG   67 (111)
T ss_dssp             HGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHT------TCCHHH----HHHHHHHTTCSS
T ss_pred             HHCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHH------CCCHHH----HHHHHHHHCCCC
T ss_conf             63417999999999999592476437899999897------989879----999999927798


No 162
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima}
Probab=69.14  E-value=5.9  Score=18.86  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=58.4

Q ss_pred             CCEEEEEECHHHHHHHHHHCCCCEEEEEEECC-CCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE-
Q ss_conf             98899982858999999828996799990078-9662179998631013321000024432100001112220100010-
Q gi|254780526|r   23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN-  100 (223)
Q Consensus        23 g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~-~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~-  100 (223)
                      |..-......+.+..+.....-.+.++|++.. .....-+++++.+.+...+|+.+-.+-.+.++..+.|.+|||--+. 
T Consensus        24 g~~~~~~~~~d~~~~~~~~gadei~i~did~~~~~~g~n~~lI~~I~~~~~iPl~vGGGIr~~ed~~~ll~~GadkVii~  103 (266)
T 2w6r_A           24 GKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA  103 (266)
T ss_dssp             TTEEEEEEHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred             CEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHEECCEEEECCCCCCCCCHHHHHHHHHHHEEEC
T ss_conf             98217879799999999879998999996087557886677764345324854997677212021003332200000113


Q ss_pred             -----CCCCCCCC
Q ss_conf             -----23333321
Q gi|254780526|r  101 -----KPIHHREI  108 (223)
Q Consensus       101 -----KP~~~~eL  108 (223)
                           +|...+++
T Consensus       104 s~~~~~~~~~~~i  116 (266)
T 2w6r_A          104 SVFHFREIDMREL  116 (266)
T ss_dssp             CCC------CHHH
T ss_pred             CCCCCCCHHHHHH
T ss_conf             3224551122667


No 163
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=68.96  E-value=3.2  Score=20.53  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             124210123443211288340089999865287657776613688999999860145
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK  204 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~  204 (223)
                      .|++++..++.+..-. |  .|-.+|++.+      .++.+||.++++|.++||+..
T Consensus       140 ~L~~~~r~ii~l~y~~-g--~s~~eIA~~l------g~s~~tV~~~l~ra~~~Lr~~  187 (194)
T 1or7_A          140 SLPEDLRMAITLRELD-G--LSYEEIAAIM------DCPVGTVRSRIFRAREAIDNK  187 (194)
T ss_dssp             HSCHHHHHHHHHHHTT-C--CCHHHHHHHT------TSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH
T ss_conf             0999999999999983-9--8999999998------939999999999999999999


No 164
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=67.86  E-value=5  Score=19.31  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=25.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             21242101234432112883400899998652876577766136889999998
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ..||..++.+|.+|..++|  ++-.+|++.+      ..+..++-..|.+|-+
T Consensus        42 ~glt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~~vs~~l~~L~~   86 (162)
T 3k0l_A           42 LEISLPQFTALSVLAAKPN--LSNAKLAERS------FIKPQSANKILQDLLA   86 (162)
T ss_dssp             TTCCHHHHHHHHHHHHCTT--CCHHHHHHHH------TSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             5979999999999997799--8999999998------9688699999999998


No 165
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=66.81  E-value=5.2  Score=19.18  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             32124210123443211288340089999865287657776613688999999
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      .+.||..+|.+|..|..++|  +|-.+|.+.+      ..+..++-..+.+|-
T Consensus        24 ~~glt~~q~~vL~~l~~~~~--~t~~~La~~l------~i~~~~vs~~v~~L~   68 (144)
T 1lj9_A           24 ELSLTRGQYLYLVRVCENPG--IIQEKIAELI------KVDRTTAARAIKRLE   68 (144)
T ss_dssp             GGTCTTTHHHHHHHHHHSTT--EEHHHHHHHH------TCCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             77989999999999984899--7999999998------978889999999999


No 166
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=66.42  E-value=5.2  Score=19.20  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             321242101234432112883400899998652876577766136889999998
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ...||..|+.+|..|..+++  .+-.+|++.+      .++..++--.|.+|.+
T Consensus        32 ~~~lt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~vsr~l~~L~~   77 (142)
T 3ech_A           32 RLDLTPPDVHVLKLIDEQRG--LNLQDLGRQM------CRDKALITRKIRELEG   77 (142)
T ss_dssp             TCCCCHHHHHHHHHHHHTTT--CCHHHHHHHH------C---CHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             68979999999999997799--8999999998------9698799999999998


No 167
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=66.31  E-value=4.9  Score=19.33  Aligned_cols=46  Identities=11%  Similarity=0.235  Sum_probs=28.9

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             332124210123443211288340089999865287657776613688999999
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      ....||+.|+.+|.++..++|  ++-.+|++.+      ..+..++--.|.+|-
T Consensus        23 ~~~~lt~~q~~vL~~i~~~~~--~t~~eLa~~~------~~~~~~vs~~v~~L~   68 (138)
T 3bpv_A           23 GHLNLTDAQVACLLRIHREPG--IKQDELATFF------HVDKGTIARTLRRLE   68 (138)
T ss_dssp             GGGTCCHHHHHHHHHHHHSTT--CBHHHHHHHH------TCCHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             657989999999999985899--7999999998------979879999999999


No 168
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=66.03  E-value=5.4  Score=19.06  Aligned_cols=46  Identities=7%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             321242101234432112883400899998652876577766136889999998
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ...||..|+.+|..|..++|  ++-.+|.+.+      ..+..|+-..+.+|-+
T Consensus        28 ~~~lt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~tvs~~l~~L~~   73 (139)
T 3bja_A           28 QYDISYVQFGVIQVLAKSGK--VSMSKLIENM------GCVPSNMTTMIQRMKR   73 (139)
T ss_dssp             GGTCCHHHHHHHHHHHHSCS--EEHHHHHHHC------SSCCTTHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHC------CCCHHHHHHHHHHHHH
T ss_conf             86989999999999998699--8999998470------8688899999999998


No 169
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=65.98  E-value=6.8  Score=18.46  Aligned_cols=88  Identities=19%  Similarity=0.159  Sum_probs=44.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
                      +.+||.|+.....    +...|+.+...+..+ ...+....-.+...+.+..+ .+...+..+...|+.+..||+..+..
T Consensus        32 vvvid~d~~~~~~----~~~~~~~~~~gd~~~-~~~L~~~~i~~a~~vi~~~~-~d~~n~~~~~~~k~~~~~~ii~~~~~  105 (141)
T 3llv_A           32 VLAVDKSKEKIEL----LEDEGFDAVIADPTD-ESFYRSLDLEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIVRVSS  105 (141)
T ss_dssp             EEEEESCHHHHHH----HHHTTCEEEECCTTC-HHHHHHSCCTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred             EEEEECCHHHHHH----HHHCCCEEEEECCCC-HHHHHHHHHHCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             8999571999999----984597299934678-88886666723889999818-80999999999985589988999869


Q ss_pred             CCCCCCCCCCCCCCEE
Q ss_conf             2100001112220100
Q gi|254780526|r   82 PSLQTTLDFFDSGVDD   97 (223)
Q Consensus        82 ~~~~~~i~~l~~GAdd   97 (223)
                        .++.-..-++|||.
T Consensus       106 --~~~~~~l~~~G~~~  119 (141)
T 3llv_A          106 --PKKKEEFEEAGANL  119 (141)
T ss_dssp             --GGGHHHHHHTTCSE
T ss_pred             --HHHHHHHHHCCCCE
T ss_conf             --88999999779899


No 170
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=65.86  E-value=3.8  Score=20.08  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             3321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      +.+-||+.|+.++.+|..+.+  ++-.+|++.+      ..+..+    |+++-++|...+
T Consensus        14 ~~~glt~~e~~v~~~L~~~~~--~t~~eia~~~------~~~~~~----v~~~l~~L~~~G   62 (109)
T 1sfx_A           14 EKLSFKPSDVRIYSLLLERGG--MRVSEIAREL------DLSARF----VRDRLKVLLKRG   62 (109)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCC--BCHHHHHHHH------TCCHHH----HHHHHHHHHHTT
T ss_pred             HHCCCCHHHHHHHHHHHCCCC--CCHHHHHHHH------CCCCCH----HHHHHHHHHHCC
T ss_conf             985999999999999980488--8799999997------567018----999999999599


No 171
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=64.86  E-value=3.6  Score=20.16  Aligned_cols=47  Identities=15%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             21242101234432112883400899998652876577766136889999998
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ..||..++.+|.+|..+++..++-.+|++.+.      .+..++--.|.+|-+
T Consensus        37 ~glt~~q~~vL~~L~~~~~~~it~~eLa~~l~------~~~~~~sr~l~~L~~   83 (148)
T 3jw4_A           37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFG------RRGASITSMLQGLEK   83 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------------CHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC------CCHHHHHHHHHHHHH
T ss_conf             59899999999999937999939999999989------778589999999998


No 172
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=64.22  E-value=4.8  Score=19.38  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             321242101234432112883400899998652876577766136889999998
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ...||..++.+|..+..++|  ++-.+|++.+      ..+..++-..|.+|-+
T Consensus        32 ~~glt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~vs~~i~~L~~   77 (143)
T 3oop_A           32 SYDVTPEQWSVLEGIEANEP--ISQKEIALWT------KKDTPTVNRIVDVLLR   77 (143)
T ss_dssp             TSSSCHHHHHHHHHHHHHSS--EEHHHHHHHH------TCCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             66999999999999986899--7999999998------9699799999999975


No 173
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.21  E-value=3.9  Score=19.97  Aligned_cols=58  Identities=10%  Similarity=0.185  Sum_probs=40.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             223321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ...-+.+|+.-..||+.|.++++..+|-++|.+.+-.. ...++..    .|||--+.|.+.+
T Consensus        10 k~~Glr~T~qR~~Il~~L~~~~~~h~sa~eI~~~l~~~-~~~i~~~----TVYR~L~~L~e~g   67 (136)
T 1mzb_A           10 RKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLA----TVYRVLTQFEAAG   67 (136)
T ss_dssp             HHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHH----HHHHHHHHHHHHT
T ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCHH----HHHHHHHHHHHCC
T ss_conf             98699979899999999985899999999999999976-8898889----9999999999689


No 174
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.21  E-value=7.1  Score=18.34  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=13.1

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             24210123443211288340089999865
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ||..++.+|..|..+++ .++-.+|.+.+
T Consensus        35 lt~~q~~iL~~l~~~~~-~~t~~eL~~~~   62 (146)
T 2fbh_A           35 LSQARWLVLLHLARHRD-SPTQRELAQSV   62 (146)
T ss_dssp             CTTTHHHHHHHHHHCSS-CCBHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf             89999999999986799-99999999998


No 175
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=62.49  E-value=5.9  Score=18.85  Aligned_cols=30  Identities=10%  Similarity=0.077  Sum_probs=18.0

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             32124210123443211288340089999865
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ...||..+|.+|.+|..+++  ++-.+|++.+
T Consensus        42 ~~gLt~~q~~vL~~l~~~~~--~~~~eLa~~l   71 (153)
T 2pex_A           42 ALDLTYPQYLVMLVLWETDE--RSVSEIGERL   71 (153)
T ss_dssp             TTTCCHHHHHHHHHHHHSCS--EEHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             76979999999999984799--8999999998


No 176
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=62.05  E-value=6.5  Score=18.57  Aligned_cols=29  Identities=14%  Similarity=0.119  Sum_probs=14.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             124210123443211288340089999865
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      .||..+|.+|..|..+++ .++-.+|++.+
T Consensus        44 glt~~q~~vL~~L~~~~~-~~t~~~La~~~   72 (160)
T 3boq_A           44 GLSLAKFDAMAQLARNPD-GLSMGKLSGAL   72 (160)
T ss_dssp             SCCHHHHHHHHHHHHCTT-CEEHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf             929999999999986899-99899999998


No 177
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis}
Probab=61.97  E-value=8.1  Score=18.00  Aligned_cols=22  Identities=0%  Similarity=0.001  Sum_probs=8.4

Q ss_pred             HHHHHHHCCCCC-CCCCEEEECC
Q ss_conf             999998601456-7771577868
Q gi|254780526|r  194 ISKLRKKLRNKL-GFDPVDSKRF  215 (223)
Q Consensus       194 I~rLRkKL~~~~-~~~~I~tvrg  215 (223)
                      ..+|.++|.... ....++|.-|
T Consensus       219 f~~l~~~L~~~~~~~~~~e~~~g  241 (247)
T 3kfw_X          219 YHDFATAMAKRRDATQLLEVTEG  241 (247)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             99999997620558887775358


No 178
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=61.89  E-value=6.4  Score=18.62  Aligned_cols=45  Identities=16%  Similarity=0.205  Sum_probs=22.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2124210123443211288340089999865287657776613688999999
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      ..||..+|.+|.+|..+++ .++-.+|++.+      ..+..++.-.|.+|-
T Consensus        49 ~gLt~~q~~vL~~L~~~~~-~~t~~eLa~~l------~i~~stvsr~v~~L~   93 (166)
T 3deu_A           49 LELTQTHWVTLHNIHQLPP-DQSQIQLAKAI------GIEQPSLVRTLDQLE   93 (166)
T ss_dssp             TTCCHHHHHHHHHHHHSCS-SEEHHHHHHHH------TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC-CCCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             6989999999999997698-97999999997------989989999999998


No 179
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=61.81  E-value=5.8  Score=18.89  Aligned_cols=17  Identities=0%  Similarity=0.000  Sum_probs=9.4

Q ss_pred             CCCCCCCCHHHHHHHHC
Q ss_conf             32124210123443211
Q gi|254780526|r  146 VFPLPRRERRILEYLMA  162 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~  162 (223)
                      .+.||++=..++.-...
T Consensus       100 ~l~LT~kG~~~~~~~~~  116 (189)
T 3nqo_A          100 NVKVTDLGKKVMVTCSR  116 (189)
T ss_dssp             EEEECHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHH
T ss_conf             34678889999999999


No 180
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=61.45  E-value=8.2  Score=17.94  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECH---HHHHHHHHHCCCCEEEEEEECCCCCC-----HHHHHHHHHHCCCCC
Q ss_conf             6897098999999999999789889998285---89999998289967999900789662-----179998631013321
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE-----KVLELPRIIRAHSQV   73 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~---~~~~~l~~~~~~d~~iid~~l~~~~~-----~g~~l~~~lr~~~~~   73 (223)
                      |||||-...+...+..+|++.|+.|.++...   +.........++|-+++-   +.|+.     ...+..+..  ...+
T Consensus         3 iliiD~~dSFt~Niv~~l~~~g~~v~V~~~~~~~~~~~~~~~~~~~dgiILs---gGPg~p~~~~~~~~~~~~~--~~~i   77 (192)
T 1i1q_B            3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLS---PGPGVPSEAGCMPELLTRL--RGKL   77 (192)
T ss_dssp             EEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEEC---CCSSCGGGSTTHHHHHHHH--BTTB
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEE---CCCCCCCCCCCCHHHHHHH--HCCC
T ss_conf             9999788827999999999789907999899877367999983496969981---9998714331337999998--5699


Q ss_pred             CEECCC
Q ss_conf             000024
Q gi|254780526|r   74 PLIGIS   79 (223)
Q Consensus        74 pII~lt   79 (223)
                      ||+=+.
T Consensus        78 PiLGIC   83 (192)
T 1i1q_B           78 PIIGIC   83 (192)
T ss_dssp             CEEEET
T ss_pred             CHHHHC
T ss_conf             814538


No 181
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=60.65  E-value=6.7  Score=18.52  Aligned_cols=44  Identities=7%  Similarity=0.195  Sum_probs=25.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2124210123443211288340089999865287657776613688999999
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      ..||..++.+|..+..+++  ++-.+|++.+      ..+..++...+.+|-
T Consensus        30 ~~lt~~q~~vL~~l~~~~~--~t~~ela~~~------~~~~~~vs~~l~~L~   73 (138)
T 1jgs_A           30 LDITAAQFKVLCSIRCAAC--ITPVELKKVL------SVDLGALTRMLDRLV   73 (138)
T ss_dssp             TTSCHHHHHHHHHHHHHSS--BCHHHHHHHH------TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             5969999999999987799--8999999998------978879999999998


No 182
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.41  E-value=8.5  Score=17.84  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=40.4

Q ss_pred             CCCCCCHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             12421012344321-128834008999986528765777661368899999986014567
Q gi|254780526|r  148 PLPRRERRILEYLM-ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       148 ~LT~~E~~lL~~L~-~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      .|+++|..++.+-. -+.+++.|-.+|...+      .++...|...-.+-.+||+....
T Consensus         5 ~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~l------gvS~erVrqie~~Al~kLr~~~~   58 (68)
T 2p7v_B            5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQF------DVTRERIRQIEAKALRKLRHPSR   58 (68)
T ss_dssp             CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHGGGSCCG
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             4999999999998389999977899999998------96999999999999999882678


No 183
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=60.02  E-value=8.7  Score=17.78  Aligned_cols=80  Identities=16%  Similarity=0.034  Sum_probs=46.8

Q ss_pred             EECHHHHH-HHHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHCC-CCCCEECCCCCCC-
Q ss_conf             82858999-9998289967999900789--66217--------------------9998631013-3210000244321-
Q gi|254780526|r   29 FNSLEFEE-WLQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRAH-SQVPLIGISDYPS-   83 (223)
Q Consensus        29 ~~~~~~~~-~l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~-~~~pII~lt~~~~-   83 (223)
                      +.+.+... .+......-++++.+.+|.  |-.||                    +++++.+|+. ..+|+++++..+. 
T Consensus        27 ~P~~~~~~~~l~~l~~~GaD~iEiGiPfSDP~aDGpvIq~a~~~al~~g~~~~~~~~~~~~~r~~~~~~plvlm~Y~N~i  106 (268)
T 1qop_A           27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLV  106 (268)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             79879999999999977999999789888865447999999999997898679987678876531788778999852511


Q ss_pred             -----CCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             -----0000111222010001023333321
Q gi|254780526|r   84 -----LQTTLDFFDSGVDDVVNKPIHHREI  108 (223)
Q Consensus        84 -----~~~~i~~l~~GAddyl~KP~~~~eL  108 (223)
                           +...-++-++|+|+.|.-..-++|-
T Consensus       107 ~~~G~~~f~~~~~~~Gv~GliipDlp~ee~  136 (268)
T 1qop_A          107 FNNGIDAFYARCEQVGVDSVLVADVPVEES  136 (268)
T ss_dssp             HTTCHHHHHHHHHHHTCCEEEETTCCGGGC
T ss_pred             CCCCHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf             237878999999974986665158885666


No 184
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=59.66  E-value=6.7  Score=18.51  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHCC--CCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             223321242101234432112--88340-08999986528765777661368899999986
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMAN--RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~--~g~~v-sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      +=+.+.||..|+.++-.|+..  .|..+ |-+.|++.+      ..+.++|..++.+|.+|
T Consensus        24 ~y~~lgLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~------g~s~~~v~~~l~~L~~~   78 (128)
T 2vn2_A           24 HYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERM------TVSAAECMEMVRRLLQK   78 (128)
T ss_dssp             TTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTS------SSCHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             89883989999999999999987599999999999895------94999999999999988


No 185
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.35  E-value=8.4  Score=17.87  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             212421012344321128834008999986528765777661368899999
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL  197 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rL  197 (223)
                      ..||..|+.+|.+|..+++  ++-.+|++.+      .++..++-..|.+|
T Consensus        36 ~glt~~q~~vL~~L~~~~~--~t~~~la~~l------~i~~~~vsr~l~~L   78 (148)
T 3nrv_A           36 FGIGMTEWRIISVLSSASD--CSVQKISDIL------GLDKAAVSRTVKKL   78 (148)
T ss_dssp             GTCCHHHHHHHHHHHHSSS--BCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHH
T ss_conf             4989999999999997799--7999999998------96998999999998


No 186
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=58.95  E-value=1.7  Score=22.25  Aligned_cols=60  Identities=23%  Similarity=0.194  Sum_probs=27.3

Q ss_pred             HCCCCEEEEEEECCCCCCHH------------HHHHHHHHCCCCCCEECC-CCC-CCCCCCC-CCCCCCCEEEEE
Q ss_conf             28996799990078966217------------999863101332100002-443-2100001-112220100010
Q gi|254780526|r   41 SAREDVSAIEAFLIGKGEKV------------LELPRIIRAHSQVPLIGI-SDY-PSLQTTL-DFFDSGVDDVVN  100 (223)
Q Consensus        41 ~~~~d~~iid~~l~~~~~~g------------~~l~~~lr~~~~~pII~l-t~~-~~~~~~i-~~l~~GAddyl~  100 (223)
                      ....+++.+++++.-|...+            -++.+..|+..+.|+.+- +.. .+..+.. .+.++|+|....
T Consensus       121 ~~~~~~d~ielN~~cP~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~vkl~~~~~~~~~~~~~~~~~g~~~~~~  195 (311)
T 1ep3_A          121 GDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM  195 (311)
T ss_dssp             TTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred             HHCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             641797667304578843330223256999999999999850368703215866332799999999839877999


No 187
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=58.92  E-value=3  Score=20.70  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             2124210123443211288340--089999865287657776613688999999860145
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRV--AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK  204 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~v--sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~  204 (223)
                      -.||+.|..|..++..|+..+.  |=.+|++..      .+++-|    |.|.=|||+=.
T Consensus        13 ~~ls~se~~Ia~yil~~~~~i~~~si~elA~~~------~VS~aT----i~Rf~kklGf~   62 (107)
T 3iwf_A           13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQL------ETSSTS----IIRLSKKVTPG   62 (107)
T ss_dssp             GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHH------TSCHHH----HHHHHHHHSTT
T ss_pred             HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHH------CCCHHH----HHHHHHHHCCC
T ss_conf             663999999999999599999776599999897------989989----99999995889


No 188
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=58.64  E-value=6.8  Score=18.44  Aligned_cols=45  Identities=13%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             21242101234432112883400899998652876577766136889999998
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ..||..++.+|..|..+++  ++-.+|++.+      ..+..|+-..|.+|-+
T Consensus        27 ~glt~~q~~vL~~l~~~~~--~t~~~la~~l------~i~~~tvs~~v~~L~~   71 (142)
T 3bdd_A           27 LGISLTRYSILQTLLKDAP--LHQLALQERL------QIDRAAVTRHLKLLEE   71 (142)
T ss_dssp             HSSCHHHHHHHHHHHHHCS--BCHHHHHHHH------TCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             4969999999999987799--8999999998------9698689999999985


No 189
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=58.21  E-value=8  Score=18.02  Aligned_cols=11  Identities=9%  Similarity=0.344  Sum_probs=3.9

Q ss_pred             HHHHHHHCCCC
Q ss_conf             99863101332
Q gi|254780526|r   62 ELPRIIRAHSQ   72 (223)
Q Consensus        62 ~l~~~lr~~~~   72 (223)
                      ++.+.+.+.+.
T Consensus        87 ~~~~~l~~~p~   97 (162)
T 2p5v_A           87 DFAASVRKWPE   97 (162)
T ss_dssp             HHHHHHTTCTT
T ss_pred             HHHHHHHHCCC
T ss_conf             99999984887


No 190
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=58.17  E-value=4.7  Score=19.49  Aligned_cols=57  Identities=11%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             23321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ..-+.+|+.-..||++|.++.++.+|-++|++.+-.. +..++..|    |||.-+.|...+
T Consensus        10 ~~G~r~T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~-~~~i~~aT----VYR~L~~l~~~g   66 (150)
T 2w57_A           10 DAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDL-GEEIGLAT----VYRVLNQFDDAG   66 (150)
T ss_dssp             HTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHH----HHHHHHHHHHTT
T ss_pred             HCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCHHH----HHHHHHHHHHHH
T ss_conf             8699989999999999983899999999999999861-88867799----999999998754


No 191
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=57.97  E-value=7.1  Score=18.32  Aligned_cols=27  Identities=7%  Similarity=0.298  Sum_probs=10.5

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             24210123443211288340089999865
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ||..++.+|..|..+++  +|-.+|++.+
T Consensus        39 lt~~q~~vL~~L~~~~~--~t~~~La~~l   65 (154)
T 2qww_A           39 LTIQQLAMINVIYSTPG--ISVADLTKRL   65 (154)
T ss_dssp             CCHHHHHHHHHHHHSTT--EEHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             89999999999997799--8999999997


No 192
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=57.89  E-value=9.5  Score=17.55  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHCCCCCCEECCCCCCC------CCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             1799986310133210000244321------00001112220100010233333
Q gi|254780526|r   59 KVLELPRIIRAHSQVPLIGISDYPS------LQTTLDFFDSGVDDVVNKPIHHR  106 (223)
Q Consensus        59 ~g~~l~~~lr~~~~~pII~lt~~~~------~~~~i~~l~~GAddyl~KP~~~~  106 (223)
                      +.+++++.+|+..++|++++|-.+.      +...-++-++|+|+.+.--..++
T Consensus        67 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~~~f~~~~~~~Gv~g~iipDlp~e  120 (248)
T 1geq_A           67 EAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF  120 (248)
T ss_dssp             HHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGG
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf             999999999734698789980665012357999999998679857860578866


No 193
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=57.40  E-value=8.7  Score=17.78  Aligned_cols=13  Identities=0%  Similarity=0.130  Sum_probs=4.8

Q ss_pred             HHHHHHHCCCCCC
Q ss_conf             9986310133210
Q gi|254780526|r   62 ELPRIIRAHSQVP   74 (223)
Q Consensus        62 ~l~~~lr~~~~~p   74 (223)
                      ++++.+.+++.++
T Consensus        12 ~Il~~L~~d~R~s   24 (152)
T 2cg4_A           12 GILEALMGNARTA   24 (152)
T ss_dssp             HHHHHHHHCTTSC
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999999848999


No 194
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=57.27  E-value=8.1  Score=17.98  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=10.4

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             24210123443211288340089999865
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ||..|+.+|..|..++|  ++-.+|.+.+
T Consensus        41 Lt~~q~~iL~~l~~~~~--~t~~eLa~~l   67 (155)
T 3cdh_A           41 LRVPEWRVLACLVDNDA--MMITRLAKLS   67 (155)
T ss_dssp             CCHHHHHHHHHHSSCSC--BCHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             69999999999985799--6999999998


No 195
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=55.34  E-value=3.1  Score=20.64  Aligned_cols=62  Identities=21%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             CEEEEEEECCC--CCCHH--------------------HHHHHHHHCCCCCCEECCCCCCC------CCCCCCCCCCCCE
Q ss_conf             67999900789--66217--------------------99986310133210000244321------0000111222010
Q gi|254780526|r   45 DVSAIEAFLIG--KGEKV--------------------LELPRIIRAHSQVPLIGISDYPS------LQTTLDFFDSGVD   96 (223)
Q Consensus        45 d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~~~~pII~lt~~~~------~~~~i~~l~~GAd   96 (223)
                      -++++.+.+|.  |-.||                    +++++.+|+..++|+++++-.+.      +...-++-++|+|
T Consensus        42 gaDiiEiGiPfSDP~aDGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~p~vlM~Y~N~~~~~G~~~F~~~~~~aGvd  121 (271)
T 1ujp_A           42 YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGAT  121 (271)
T ss_dssp             GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHCCCC
T ss_conf             99989968998886655699999998888679966889999999862379755999844424416737888999873984


Q ss_pred             EEEECCCCCC
Q ss_conf             0010233333
Q gi|254780526|r   97 DVVNKPIHHR  106 (223)
Q Consensus        97 dyl~KP~~~~  106 (223)
                      +.|.--.-++
T Consensus       122 G~iipDLP~e  131 (271)
T 1ujp_A          122 GVILPDLPPD  131 (271)
T ss_dssp             EEECTTCCGG
T ss_pred             EEECCCCCHH
T ss_conf             2324778522


No 196
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 2ogu_A 2fy8_A 3kxd_A
Probab=55.24  E-value=10  Score=17.28  Aligned_cols=89  Identities=10%  Similarity=0.058  Sum_probs=47.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECH-HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC
Q ss_conf             6897098999999999999789889998285-89999998289967999900789662179998631013-321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~-~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt   79 (223)
                      +.+||.|+...+.    +...|+.+..-+.. ...+......+.+.+++..  + .+...+..+..+|.. ++++|++..
T Consensus        33 v~vi~~d~~~~~~----~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vii~~--~-~D~~n~~~~~~~r~~~~~~~ii~~~  105 (234)
T 2aef_A           33 VFVLAEDENVRKK----VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL--E-SDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EEEEESCGGGHHH----HHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECC--S-CHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             CEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEE--C-CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             7899889899999----9966984999826999999865867343999993--5-7312167887666516761499998


Q ss_pred             CCCCCCCCCCCCCCCCEEEE
Q ss_conf             43210000111222010001
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVV   99 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl   99 (223)
                      ...+  +.-....+|||..+
T Consensus       106 ~~~~--~~~~l~~~g~d~vi  123 (234)
T 2aef_A          106 ERYE--NIEQLRMAGADQVI  123 (234)
T ss_dssp             SSGG--GHHHHHHHTCSEEE
T ss_pred             CCHH--HHHHHHCCCCCEEE
T ss_conf             6856--75543005998998


No 197
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=54.85  E-value=11  Score=17.24  Aligned_cols=15  Identities=13%  Similarity=0.346  Sum_probs=6.4

Q ss_pred             HHHHHHHHCCCCCCE
Q ss_conf             999863101332100
Q gi|254780526|r   61 LELPRIIRAHSQVPL   75 (223)
Q Consensus        61 ~~l~~~lr~~~~~pI   75 (223)
                      ..+++.+.+++..|.
T Consensus         7 ~~Il~~L~~d~r~s~   21 (141)
T 1i1g_A            7 KIILEILEKDARTPF   21 (141)
T ss_dssp             HHHHHHHHHCTTCCH
T ss_pred             HHHHHHHHHCCCCCH
T ss_conf             999999998489899


No 198
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=54.80  E-value=11  Score=17.23  Aligned_cols=69  Identities=12%  Similarity=0.189  Sum_probs=47.0

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             999999828996799990078966-217999863101332100002443210000111222010001023
Q gi|254780526|r   34 FEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        34 ~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
                      .+..+.......+.++|++-...+ ..-+++++.+.+...+|+-+-.+-.+.++....+++||+-.+.-.
T Consensus        35 ~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~e~~~~~l~~Ga~kVvigs  104 (253)
T 1thf_D           35 LGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINT  104 (253)
T ss_dssp             HHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHCCCCEEEECH
T ss_conf             9999998699889998412433464338999999997359975874557522217889874999999884


No 199
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=54.73  E-value=8.6  Score=17.83  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEE---CCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             9828589999998289967999900789662179998631013321000---0244321000011122201000102333
Q gi|254780526|r   28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIH  104 (223)
Q Consensus        28 ~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII---~lt~~~~~~~~i~~l~~GAddyl~KP~~  104 (223)
                      +..+.+..+........-+.++..++    .+--++.+.+++.....++   ++.+.+.++..+        +||.|-+.
T Consensus        15 Avr~~~~le~al~s~~~~iflL~g~I----~~l~~iv~~~k~~gK~vfVHiDLI~GL~~d~~av--------~fL~~~~~   82 (192)
T 3kts_A           15 AAHNQKDMEKILELDLTYMVMLETHV----AQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAI--------DFLCTEIC   82 (192)
T ss_dssp             EESSSHHHHHHTTSSCCEEEECSEET----TTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHH--------HHHHHTTC
T ss_pred             EECCHHHHHHHHCCCCCEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH--------HHHHHHCC
T ss_conf             83788999999758998999953718----7799999999987998999853167778888999--------99998428


Q ss_pred             CCCCC
Q ss_conf             33210
Q gi|254780526|r  105 HREIL  109 (223)
Q Consensus       105 ~~eL~  109 (223)
                      +.=++
T Consensus        83 ~dGII   87 (192)
T 3kts_A           83 PDGII   87 (192)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99899


No 200
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=54.08  E-value=9.1  Score=17.65  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=25.0

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             1242101234432112883400899998652876577766136889999998
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      .||..++.+|.++..++|  ++-.+|++.+      .++..++-..|.+|-+
T Consensus        49 gLt~~q~~iL~~l~~~~~--~t~~~La~~~------~~~~~~vsr~v~~L~~   92 (162)
T 3cjn_A           49 GLSTAKMRALAILSAKDG--LPIGTLGIFA------VVEQSTLSRALDGLQA   92 (162)
T ss_dssp             TCCHHHHHHHHHHHHSCS--EEHHHHHHHH------TCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             959999999999984799--8999999998------9798899999999986


No 201
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=54.05  E-value=8.3  Score=17.91  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=11.2

Q ss_pred             CCCCCCCCCHHHHHHHHC
Q ss_conf             332124210123443211
Q gi|254780526|r  145 EVFPLPRRERRILEYLMA  162 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~  162 (223)
                      ..+.||++-..++.-+..
T Consensus       128 ~~l~LT~~G~~l~~~~~~  145 (181)
T 2fbk_A          128 ASIRLTPQGRALVTHLLP  145 (181)
T ss_dssp             CCBEECHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHH
T ss_conf             211328889999999999


No 202
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.00  E-value=10  Score=17.41  Aligned_cols=47  Identities=9%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             32124210123443211288340089999865287657776613688999999860145
Q gi|254780526|r  146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK  204 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~  204 (223)
                      ...||..|+.+|..|..+++  ++-.+|++.+      ..+..+    ++++-++|...
T Consensus        37 ~~~lt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~~----vs~~l~~L~~~   83 (150)
T 2rdp_A           37 NYPITPPQFVALQWLLEEGD--LTVGELSNKM------YLACST----TTDLVDRMERN   83 (150)
T ss_dssp             TSSSCHHHHHHHHHHHHHCS--BCHHHHHHHH------TCCHHH----HHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHH----HHHHHHHHHCC
T ss_conf             77979999999999997799--5999999998------968878----99999999718


No 203
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=53.23  E-value=11  Score=17.08  Aligned_cols=59  Identities=15%  Similarity=-0.013  Sum_probs=33.3

Q ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             899679999007896621799986310133210000244321000011122201000102
Q gi|254780526|r   42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK  101 (223)
Q Consensus        42 ~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~K  101 (223)
                      .-...+=+..+-..= ...++-++.+|+..++||+.=-=--++.+..++..+|||.-+.=
T Consensus        74 ~gA~aiSVlTe~~~F-~Gs~~dL~~v~~~v~~PiLrKDFIid~~QI~ea~~~GADavLLI  132 (247)
T 1a53_A           74 RYAVGLSILTEEKYF-NGSYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLI  132 (247)
T ss_dssp             TTCSEEEEECCCTTT-CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEE
T ss_pred             CCCEEEEEECCCCCC-CCCHHHHHHHHHHHCCCEEHHCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             598289996788888-99999999999860686421012388999999999466645688


No 204
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=52.66  E-value=11  Score=17.02  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECCCCC
Q ss_conf             098999999999999789889998285899999982899679999007896621799986310133-2100002443
Q gi|254780526|r    6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDY   81 (223)
Q Consensus         6 eDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~lt~~   81 (223)
                      =.++.+.+.+..+|...-|.+..+.+.++........+.+++++.+--..+  +...+..++.+.+ -.|+|++...
T Consensus        16 l~s~~Laq~c~qwL~~dRY~l~~~~s~~efle~Le~~~e~IDCLVl~~~~~--~l~~~~~qL~~~GlLLPaVvvg~~   90 (289)
T 1r8j_A           16 VESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANP--SFRAVVQQLCFEGVVVPAIVVGDR   90 (289)
T ss_dssp             CCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTST--THHHHHHHHHHTTCCCCEEEESCC
T ss_pred             ECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             388899999998677885599844878899999984745677799971587--428999999965853557996157


No 205
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=51.80  E-value=12  Score=16.93  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHCCCEEEE---EECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEECCCCCCCC
Q ss_conf             9999999999978988999---828589999998289967999900789662179998631013--32100002443210
Q gi|254780526|r   10 LVKDGYIALFGDDGVSLEG---FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGISDYPSL   84 (223)
Q Consensus        10 ~~~~~l~~~L~~~g~~v~~---~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~pII~lt~~~~~   84 (223)
                      .=+..+...|...||.|..   +.+.+++-.....+..+++++-.--.....-.-++++.+|+.  +++||++= +.--.
T Consensus       619 ~ga~~iA~~F~d~GfeV~~~~~f~TpeE~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~Lk~~g~~~i~Vvvg-GviP~  697 (762)
T 2xij_A          619 RGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCG-GVIPP  697 (762)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE-ESCCG
T ss_pred             CCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCH
T ss_conf             01999999998579028527877899999999997699999992687656889999999999669998679980-77887


Q ss_pred             CCCCCCCCCCCEEEEE
Q ss_conf             0001112220100010
Q gi|254780526|r   85 QTTLDFFDSGVDDVVN  100 (223)
Q Consensus        85 ~~~i~~l~~GAddyl~  100 (223)
                      ++.-...++|+++++.
T Consensus       698 ~d~~~l~~aGV~~if~  713 (762)
T 2xij_A          698 QDYEFLFEVGVSNVFG  713 (762)
T ss_dssp             GGHHHHHHHTCCEEEC
T ss_pred             HHHHHHHHCCCCEEEC
T ss_conf             8899999869887839


No 206
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.65  E-value=11  Score=17.17  Aligned_cols=45  Identities=16%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             212421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ..||..++.+|..+..++|  +|-.+|.+.+      .++..+    ++++-++|..
T Consensus        45 ~glt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~----vs~~v~~L~~   89 (162)
T 2fa5_A           45 YGMAIPEWRVITILALYPG--SSASEVSDRT------AMDKVA----VSRAVARLLE   89 (162)
T ss_dssp             HCCCHHHHHHHHHHHHSTT--CCHHHHHHHH------TCCHHH----HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHH----HHHHHHHHHH
T ss_conf             4979999999999986799--8999999997------878715----9999999985


No 207
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=51.44  E-value=7.6  Score=18.14  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             42101234432112883400899998652876577766136889999998
Q gi|254780526|r  150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       150 T~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      ++..+.||.+|..+++  .+-.+|.+.+      .++..++-.|+.+|.+
T Consensus        15 ~p~r~~IL~~L~~~~~--~t~~eLa~~l------~is~~~vs~~l~~Le~   56 (100)
T 1ub9_A           15 NPVRLGIMIFLLPRRK--APFSQIQKVL------DLTPGNLDSHIRVLER   56 (100)
T ss_dssp             SHHHHHHHHHHHHHSE--EEHHHHHHHT------TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             9999999999851899--8399999998------9199899999999985


No 208
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=51.34  E-value=11  Score=17.20  Aligned_cols=44  Identities=14%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2124210123443211288340089999865287657776613688999999
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      ..||..|+.+|..+..+++  .+-.+|++.+      ..+..++-..+.+|-
T Consensus        33 ~glt~~q~~vL~~i~~~~~--~t~~~la~~l------~~~~~~vs~~l~~L~   76 (142)
T 2bv6_A           33 YNLTYPQFLVLTILWDESP--VNVKKVVTEL------ALDTGTVSPLLKRME   76 (142)
T ss_dssp             HTCCHHHHHHHHHHHHSSE--EEHHHHHHHT------TCCTTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             6979999999999997799--8999999998------979879999999999


No 209
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.86  E-value=11  Score=17.02  Aligned_cols=58  Identities=10%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             223321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ...-+.+|+.-..+|++|..+.+..+|-++|.+.+-.. ...++..    .|||--+.|.+.+
T Consensus         9 k~~glr~T~qR~~Il~~l~~~~~~h~sa~ei~~~l~~~-~~~i~~a----TVYR~L~~l~e~g   66 (83)
T 2fu4_A            9 KKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLA----TVYRVLNQFDDAG   66 (83)
T ss_dssp             HHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHH----HHHHHHHHHHHHT
T ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHHCC
T ss_conf             98699969999999999995899999999999998751-8998760----4999999999889


No 210
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.28  E-value=10  Score=17.37  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=14.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             124210123443211288340089999865
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      .||..++.+|.+|..++| .+|-.+|++.+
T Consensus        32 ~ls~~q~~vL~~i~~~~g-~~t~~ela~~~   60 (147)
T 2hr3_A           32 PVQFSQLVVLGAIDRLGG-DVTPSELAAAE   60 (147)
T ss_dssp             HHHHHHHHHHHHHHHTTS-CBCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf             989999999999997699-98999999998


No 211
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=50.09  E-value=12  Score=16.84  Aligned_cols=18  Identities=11%  Similarity=0.182  Sum_probs=8.6

Q ss_pred             CCCCCCCCHHHHHHHHCC
Q ss_conf             321242101234432112
Q gi|254780526|r  146 VFPLPRRERRILEYLMAN  163 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~~  163 (223)
                      .|.||.+=.+++.-+...
T Consensus       105 ~i~LT~~G~~l~~~~~~~  122 (207)
T 2fxa_A          105 YVQLTEEGTEVFWSLLEE  122 (207)
T ss_dssp             EEEECHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHH
T ss_conf             988898899999999999


No 212
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=50.09  E-value=13  Score=16.77  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=10.7

Q ss_pred             CCCCHHHHHHHHHHCCCCCCEE
Q ss_conf             9662179998631013321000
Q gi|254780526|r   55 GKGEKVLELPRIIRAHSQVPLI   76 (223)
Q Consensus        55 ~~~~~g~~l~~~lr~~~~~pII   76 (223)
                      ++..| .++++.+.+++.+|+-
T Consensus         5 lD~~D-~~IL~~L~~d~R~s~~   25 (151)
T 2cyy_A            5 LDEID-KKIIKILQNDGKAPLR   25 (151)
T ss_dssp             CCHHH-HHHHHHHHHCTTCCHH
T ss_pred             HHHHH-HHHHHHHHHCCCCCHH
T ss_conf             72899-9999999984899999


No 213
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.33  E-value=12  Score=16.94  Aligned_cols=44  Identities=14%  Similarity=0.211  Sum_probs=26.2

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2124210123443211288340089999865287657776613688999999
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      ..||+.|+.+|..+..+++  .|-.+|++.+      ..+..++-..|.+|-
T Consensus        29 ~gLt~~q~~vL~~i~~~~~--~t~~ela~~~------~~~~~~vs~~v~~L~   72 (145)
T 2a61_A           29 FGITPAQFDILQKIYFEGP--KRPGELSVLL------GVAKSTVTGLVKRLE   72 (145)
T ss_dssp             HTCCHHHHHHHHHHHHHCC--BCHHHHHHHH------TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf             5979999999999987799--8999999998------979878999999985


No 214
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=49.33  E-value=13  Score=16.69  Aligned_cols=94  Identities=11%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             HHHHHHHHHCCCEEEEEE-C-HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH---CCCCCCEECCCCCCCCCCC
Q ss_conf             999999997898899982-8-5899999982899679999007896621799986310---1332100002443210000
Q gi|254780526|r   13 DGYIALFGDDGVSLEGFN-S-LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTT   87 (223)
Q Consensus        13 ~~l~~~L~~~g~~v~~~~-~-~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr---~~~~~pII~lt~~~~~~~~   87 (223)
                      ..++..|++-...+-++. . ....-.+....-+|++++|.-  .-..+--++...+|   ...-.|++=+.. .+....
T Consensus        28 N~~k~~L~~G~~~~G~~~~~~sp~~~Ei~~~~GfDfv~ID~E--Hg~~~~~~~~~~i~aa~~~~~~~iVRvp~-~~~~~i  104 (287)
T 2v5j_A           28 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGE--HAPNNVQTVLTQLQAIAPYPSQPVVRPSW-NDPVQI  104 (287)
T ss_dssp             CHHHHHHHTTCCEEEEEECSCCHHHHHHHHTSCCSEEEEESS--SSSCCHHHHHHHHHHHTTSSSEEEEECSS-SCHHHH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCHHHH
T ss_conf             899999987998799875789969999997389899998067--89899999999999875359973554678-999999


Q ss_pred             CCCCCCCCEEEEECCCCCCCCC
Q ss_conf             1112220100010233333210
Q gi|254780526|r   88 LDFFDSGVDDVVNKPIHHREIL  109 (223)
Q Consensus        88 i~~l~~GAddyl~KP~~~~eL~  109 (223)
                      .++|++||++.+..=++..|=.
T Consensus       105 ~r~LD~Ga~GIivP~V~s~eea  126 (287)
T 2v5j_A          105 KQLLDVGTQTLLVPMVQNADEA  126 (287)
T ss_dssp             HHHHHTTCCEEEESCCCSHHHH
T ss_pred             HHHHHCCCCEEEECCCCCHHHH
T ss_conf             9998379986794675999999


No 215
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=49.05  E-value=9.9  Score=17.43  Aligned_cols=28  Identities=7%  Similarity=0.042  Sum_probs=12.5

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             124210123443211288340089999865
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      .||..++.+|..|..++|  +|-.+|++.+
T Consensus        37 glt~~q~~vL~~l~~~~~--~t~~eLa~~~   64 (147)
T 1z91_A           37 NITYPQYLALLLLWEHET--LTVKKMGEQL   64 (147)
T ss_dssp             CCCHHHHHHHHHHHHHSE--EEHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             989999999999997799--4999999997


No 216
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=48.64  E-value=2.5  Score=21.24  Aligned_cols=47  Identities=17%  Similarity=0.322  Sum_probs=35.0

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             12421012344321128834008999986528765777661368899999986014
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      .|++++.+++.+..-. |  .|..+|++.+      .++..||.+.++|-++||+.
T Consensus       135 ~L~~~~r~vl~l~~~~-g--~s~~eIA~~l------gis~~tV~~~l~ra~~kLr~  181 (184)
T 2q1z_A          135 RLPEAQRALIERAFFG-D--LTHRELAAET------GLPLGTIKSRIRLALDRLRQ  181 (184)
T ss_dssp             TSCHHHHHHHHHHHHS-C--CSSCCSTTTC------CCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_conf             4999999999999992-9--9999999998------93999999999999999999


No 217
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.40  E-value=13  Score=16.77  Aligned_cols=28  Identities=14%  Similarity=-0.007  Sum_probs=12.9

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             124210123443211288340089999865
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      .||..++.+|..|..+++  +|-.+|++.+
T Consensus        28 gls~~~~~iL~~l~~~~~--~t~~~la~~l   55 (145)
T 3g3z_A           28 DLNYNLFAVLYTLATEGS--RTQKHIGEKW   55 (145)
T ss_dssp             TCCHHHHHHHHHHHHHCS--BCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             989999999999998799--4999999998


No 218
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=47.91  E-value=14  Score=16.55  Aligned_cols=18  Identities=39%  Similarity=0.709  Sum_probs=10.4

Q ss_pred             HHHHHHHHCCCCCCEECC
Q ss_conf             999863101332100002
Q gi|254780526|r   61 LELPRIIRAHSQVPLIGI   78 (223)
Q Consensus        61 ~~l~~~lr~~~~~pII~l   78 (223)
                      .+-.+.+|+..+.|++.+
T Consensus        58 ~~~l~~ir~~~~~pv~~l   75 (232)
T 3igs_A           58 IDNLRMTRSLVSVPIIGI   75 (232)
T ss_dssp             HHHHHHHHTTCCSCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999998557617756


No 219
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=47.62  E-value=11  Score=17.04  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=52.2

Q ss_pred             HHHHHHCCCEEEEEECH--HHHHHHHHHCCCCEEEEEEECCC-C--CCHHHHHHHH-HHC-CCCCCEECCCCCCCCCCCC
Q ss_conf             99999789889998285--89999998289967999900789-6--6217999863-101-3321000024432100001
Q gi|254780526|r   16 IALFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIG-K--GEKVLELPRI-IRA-HSQVPLIGISDYPSLQTTL   88 (223)
Q Consensus        16 ~~~L~~~g~~v~~~~~~--~~~~~l~~~~~~d~~iid~~l~~-~--~~~g~~l~~~-lr~-~~~~pII~lt~~~~~~~~i   88 (223)
                      +..|-..||.|-.+.+.  ..+..+.......+  +-+.-|- +  |..--...+. +++ .+.+|||+=.+-....+..
T Consensus       117 ae~Lv~~GF~VlpY~~~D~~~ak~Le~~Gc~aV--MPl~sPIGsg~Gi~n~~~l~i~i~~~~~~vPvivDAGIG~pSdAa  194 (268)
T 2htm_A          117 AERLIEEDFLVLPYMGPDLVLAKRLAALGTATV--MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAA  194 (268)
T ss_dssp             HHHHHHTTCEECCEECSCHHHHHHHHHHTCSCB--EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHH
T ss_pred             HHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEE--EECHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             999985896899956878999999987698678--732424315764038878889998745778768635889989999


Q ss_pred             CCCCCCCEEEEEC
Q ss_conf             1122201000102
Q gi|254780526|r   89 DFFDSGVDDVVNK  101 (223)
Q Consensus        89 ~~l~~GAddyl~K  101 (223)
                      ++++.|+|..|.-
T Consensus       195 ~aMElG~DaVLvN  207 (268)
T 2htm_A          195 EVMELGLDAVLVN  207 (268)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHHCCCCEEEEC
T ss_conf             9997479899976


No 220
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.50  E-value=13  Score=16.63  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=11.3

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             24210123443211288340089999865
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ||..++.+|..|..++|.  +-.+|++.+
T Consensus        38 lt~~q~~vL~~l~~~~~~--t~~~La~~l   64 (152)
T 3bj6_A           38 VTVGQRAILEGLSLTPGA--TAPQLGAAL   64 (152)
T ss_dssp             CCHHHHHHHHHHHHSTTE--EHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCC--CHHHHHHHH
T ss_conf             799999999999987998--999999998


No 221
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor}
Probab=47.48  E-value=14  Score=16.51  Aligned_cols=79  Identities=19%  Similarity=0.076  Sum_probs=45.9

Q ss_pred             EECHHHH-HHHHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHC-CCCCCEECCCCCCCC
Q ss_conf             8285899-99998289967999900789--66217--------------------999863101-332100002443210
Q gi|254780526|r   29 FNSLEFE-EWLQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRA-HSQVPLIGISDYPSL   84 (223)
Q Consensus        29 ~~~~~~~-~~l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~-~~~~pII~lt~~~~~   84 (223)
                      +.+.+.. +.+......-++++.+.+|.  |-.||                    +++++.+|. .+++|++++|-.+..
T Consensus        30 ~P~~e~s~~~l~~l~~~G~D~iEiGiPfSDPvaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p~vlM~Y~N~i  109 (271)
T 3nav_A           30 DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLV  109 (271)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHH
T ss_conf             89878999999999976999999789988877768999999888776486076676677664202678887999750466


Q ss_pred             ------CCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             ------00011122201000102333332
Q gi|254780526|r   85 ------QTTLDFFDSGVDDVVNKPIHHRE  107 (223)
Q Consensus        85 ------~~~i~~l~~GAddyl~KP~~~~e  107 (223)
                            ...-++-++|+|+.|.-..-++|
T Consensus       110 ~~~G~e~F~~~~~~~Gv~GviipDLp~ee  138 (271)
T 3nav_A          110 YARGIDDFYQRCQKAGVDSVLIADVPTNE  138 (271)
T ss_dssp             HHTCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred             HHCCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             55289999999987699489945898156


No 222
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.42  E-value=12  Score=16.97  Aligned_cols=44  Identities=11%  Similarity=0.241  Sum_probs=23.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             1242101234432112883400899998652876577766136889999998
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      .||..|+.+|..|..+++  .+-.+|++.+      ..+..++-..|.+|-+
T Consensus        33 glt~~q~~vL~~l~~~~~--~~~~~la~~l------~i~~~~vs~~i~~L~~   76 (142)
T 2fbi_A           33 GLTEQQWRVIRILRQQGE--MESYQLANQA------CILRPSMTGVLARLER   76 (142)
T ss_dssp             TCCHHHHHHHHHHHHHCS--EEHHHHHHHT------TCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             989999999999998799--7999999997------9898899999999995


No 223
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=47.42  E-value=14  Score=16.51  Aligned_cols=18  Identities=17%  Similarity=0.416  Sum_probs=10.1

Q ss_pred             HHHHHHHHCCCCCCEECC
Q ss_conf             999863101332100002
Q gi|254780526|r   61 LELPRIIRAHSQVPLIGI   78 (223)
Q Consensus        61 ~~l~~~lr~~~~~pII~l   78 (223)
                      ..+++.+++++.+|+-=+
T Consensus        12 ~~Il~~L~~d~R~s~~ei   29 (151)
T 2dbb_A           12 MQLVKILSENSRLTYREL   29 (151)
T ss_dssp             HHHHHHHHHCTTCCHHHH
T ss_pred             HHHHHHHHHCCCCCHHHH
T ss_conf             999999988599999999


No 224
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.28  E-value=9.7  Score=17.48  Aligned_cols=50  Identities=12%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             CCCCCCCCCHHHHHHHHCC--CCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3321242101234432112--8834-008999986528765777661368899999986
Q gi|254780526|r  145 EVFPLPRRERRILEYLMAN--RGKR-VAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~--~g~~-vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      ..+.||..|+.++..|+..  .|.. -|-+.|++.+      ..+.++|..++..|-+|
T Consensus        26 ~~lgLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~------g~s~~~v~~~l~~L~~k   78 (135)
T 2v79_A           26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGM------SISVEECTNRLRMFIQK   78 (135)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS------SSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             663999899999999999887699798999999895------94999999999999988


No 225
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=46.92  E-value=14  Score=16.46  Aligned_cols=18  Identities=22%  Similarity=0.460  Sum_probs=10.2

Q ss_pred             HHHHHHHHCCCCCCEECC
Q ss_conf             999863101332100002
Q gi|254780526|r   61 LELPRIIRAHSQVPLIGI   78 (223)
Q Consensus        61 ~~l~~~lr~~~~~pII~l   78 (223)
                      .++++.+.+++.+|+--|
T Consensus        30 ~~IL~~L~~d~R~s~~~i   47 (171)
T 2e1c_A           30 KKIIKILQNDGKAPLREI   47 (171)
T ss_dssp             HHHHHHHHHCTTCCHHHH
T ss_pred             HHHHHHHHHCCCCCHHHH
T ss_conf             999999998389999999


No 226
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.67  E-value=13  Score=16.61  Aligned_cols=28  Identities=11%  Similarity=0.024  Sum_probs=14.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             124210123443211288340089999865
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      .||..|+.+|.+|..+++  ++-.+|++.+
T Consensus        41 ~ls~~q~~vL~~l~~~~~--~t~~eLa~~l   68 (154)
T 2eth_A           41 DMKTTELYAFLYVALFGP--KKMKEIAEFL   68 (154)
T ss_dssp             HSBHHHHHHHHHHHHHCC--BCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             999999999999998699--4999999998


No 227
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=45.70  E-value=14  Score=16.54  Aligned_cols=17  Identities=18%  Similarity=0.387  Sum_probs=8.4

Q ss_pred             CCCCCCCCHHHHHHHHC
Q ss_conf             32124210123443211
Q gi|254780526|r  146 VFPLPRRERRILEYLMA  162 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~~  162 (223)
                      .+.||++=..++.-+..
T Consensus       102 ~i~LT~~G~~~~~~~~~  118 (168)
T 2nyx_A          102 LAALTKRGRDVVRQVTE  118 (168)
T ss_dssp             EEEECHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHH
T ss_conf             88778879999999999


No 228
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=45.20  E-value=12  Score=16.94  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             24210123443211288340089999865287657776613688999999
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR  198 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR  198 (223)
                      +|+....||++|.+++.  .+-.+|+..+ |   ...++.+|.-|++.|.
T Consensus        11 M~~~D~rILE~L~e~g~--~t~~eIA~~l-g---i~~S~~~Vs~rl~~L~   54 (111)
T 3b73_A           11 MTIWDDRILEIIHEEGN--GSPKELEDRD-E---IRISKSSVSRRLKKLA   54 (111)
T ss_dssp             CCHHHHHHHHHHHHHSC--BCHHHHHTST-T---CCSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCC--CCHHHHHHHH-C---CCCCHHHHHHHHHHHH
T ss_conf             46019999999998499--9999999986-8---8847999999999998


No 229
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=43.93  E-value=16  Score=16.17  Aligned_cols=46  Identities=15%  Similarity=0.113  Sum_probs=31.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             1242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      .||..++.+|..+..++|  ++-.+|++.+      ..+..+    ++++-++|...+
T Consensus        35 glt~~q~~vL~~l~~~~~--~t~~eLa~~~------~~~~~~----vs~~i~~L~~~g   80 (140)
T 2nnn_A           35 GLTPTQWAALVRLGETGP--CPQNQLGRLT------AMDAAT----IKGVVERLDKRG   80 (140)
T ss_dssp             CCCHHHHHHHHHHHHHSS--BCHHHHHHHT------TCCHHH----HHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCCCC----HHHHHHHHHHCC
T ss_conf             989999999999998799--0999999987------857352----999999997389


No 230
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=43.71  E-value=16  Score=16.18  Aligned_cols=29  Identities=7%  Similarity=0.091  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             2124210123443211288340089999865
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ..||..++.+|..|..++|  .|-.+|++.+
T Consensus        32 ~glt~~q~~vL~~l~~~~~--~t~~ela~~l   60 (140)
T 3hsr_A           32 YDLTYTGYIVLMAIENDEK--LNIKKLGERV   60 (140)
T ss_dssp             GTCCHHHHHHHHHSCTTCE--EEHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             5999999999999986799--8999999998


No 231
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=43.30  E-value=16  Score=16.11  Aligned_cols=70  Identities=11%  Similarity=-0.099  Sum_probs=46.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             8999999828996799990078966217999863101332100002443210000111222010001023
Q gi|254780526|r   33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        33 ~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
                      +.+..+.......+.++|++--....+-..+.+.+.+...+||-+=.+-.+.++.-+.|+.||+--+.-.
T Consensus        36 ~~a~~~~~~g~d~l~ivDLd~~~~~~~~~~~i~~i~~~~~~pi~vgGGirs~~~~~~~l~~Ga~kvii~s  105 (244)
T 1vzw_A           36 EAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT  105 (244)
T ss_dssp             HHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCHHHH
T ss_conf             9999999869998999833433467736999999998629874774628750002110134543204456


No 232
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=42.54  E-value=16  Score=16.03  Aligned_cols=85  Identities=16%  Similarity=0.241  Sum_probs=57.6

Q ss_pred             HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             99999978988999-828589999998289967999900789---66217999863101332100002443210000111
Q gi|254780526|r   15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF   90 (223)
Q Consensus        15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~   90 (223)
                      +...+.+.|..|.. +.+...+..... ..+|.+++.-.--.   .....+.++..+++..++|||.-.+-.+-.+...+
T Consensus       102 ~~~~~~~~g~~v~~~v~~~~~A~~a~~-~g~D~lv~qG~eaGGH~g~~~~~~L~~~v~~~~~vPviaAGGI~dg~~~aaa  180 (332)
T 2z6i_A          102 YMERFHEAGIIVIPVVPSVALAKRMEK-IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG  180 (332)
T ss_dssp             THHHHHHTTCEEEEEESSHHHHHHHHH-TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHHCCEEEECCCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf             999999709889855878899999998-6899899867876788755651125567775068435752335428899999


Q ss_pred             CCCCCEEEEE
Q ss_conf             2220100010
Q gi|254780526|r   91 FDSGVDDVVN  100 (223)
Q Consensus        91 l~~GAddyl~  100 (223)
                      |..||+....
T Consensus       181 l~lGA~gV~~  190 (332)
T 2z6i_A          181 FMLGAEAVQV  190 (332)
T ss_dssp             HHTTCSEEEE
T ss_pred             HHCCCCEEEE
T ss_conf             9759763223


No 233
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=42.13  E-value=17  Score=15.99  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             982899679999007896621799986310133210000244321000011122201000
Q gi|254780526|r   39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV   98 (223)
Q Consensus        39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddy   98 (223)
                      +.....|++++|..- .....-...++.+|+..++|||+ ..-.+.+......++|||..
T Consensus       113 lv~agvd~ivID~ah-g~~~~~~~~ik~~r~~~~~~vi~-GNVaT~e~a~~L~~aGAD~V  170 (361)
T 3khj_A          113 LVEAGVDVIVLDSAH-GHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGI  170 (361)
T ss_dssp             HHHTTCSEEEECCSC-CSBHHHHHHHHHHHHHCCCEEEE-EEECSHHHHHHHHHTTCSEE
T ss_pred             HHHCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCCEEE-CCCCCHHHHHHHHHCCCCEE
T ss_conf             997799999992898-85148999999986027988686-55388899999997199889


No 234
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreductase; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=42.02  E-value=17  Score=15.98  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEEC-----CCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCC
Q ss_conf             99999978988999-8285899999982899679999007-----89662179998631013321000024432100001
Q gi|254780526|r   15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL-----IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL   88 (223)
Q Consensus        15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l-----~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i   88 (223)
                      +...+...|..+-. +.+.+.+..... .-.|.+++.-.-     ..+....+.++.++++..++|||.=.+-.+-.+..
T Consensus       110 ~i~~~~~~g~~v~~~v~s~~~A~~a~~-~G~D~li~qG~eaGGh~g~~~~~~~~L~~~v~~~~~iPviaAGGI~~g~~ia  188 (328)
T 2gjl_A          110 HIAEFRRHGVKVIHKCTAVRHALKAER-LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV  188 (328)
T ss_dssp             HHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHH-HCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf             999998769889996077999999998-2999212027766667787754166758999873378677136656669999


Q ss_pred             CCCCCCCEEEEE
Q ss_conf             112220100010
Q gi|254780526|r   89 DFFDSGVDDVVN  100 (223)
Q Consensus        89 ~~l~~GAddyl~  100 (223)
                      .+|..|||....
T Consensus       189 aal~lGA~gV~~  200 (328)
T 2gjl_A          189 AALALGADAINM  200 (328)
T ss_dssp             HHHHHTCSEEEE
T ss_pred             HHHHCCCCHHEE
T ss_conf             998439512056


No 235
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=41.28  E-value=17  Score=15.91  Aligned_cols=48  Identities=10%  Similarity=0.067  Sum_probs=34.7

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             33212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      ....++.+|..+|.+|.+++.  +|..++++.+      ..++.++.-++.+|+++
T Consensus       424 ~~~~l~~~~~~iL~~l~~~~~--it~~ela~~l------~~s~~~~~~~L~~L~~~  471 (583)
T 3lmm_A          424 EARQDDYRIAIVLYLLFQRPF--ITIDVVARGL------QSGKEAARNALEAARQT  471 (583)
T ss_dssp             GGGTTCHHHHHHHHHHHHSSS--BCHHHHHHHH------TSCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             334676678999999986888--7899999886------88999999999999977


No 236
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=41.05  E-value=6.4  Score=18.61  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=7.5

Q ss_pred             HHHHHHHCCCCCCEECC
Q ss_conf             99863101332100002
Q gi|254780526|r   62 ELPRIIRAHSQVPLIGI   78 (223)
Q Consensus        62 ~l~~~lr~~~~~pII~l   78 (223)
                      +..+.+|+..+.|++..
T Consensus        59 ~~~~~~~~~~~~~~~~~   75 (234)
T 1yxy_A           59 RDIKEIQAITDLPIIGI   75 (234)
T ss_dssp             HHHHHHHTTCCSCEEEE
T ss_pred             HHHHHHHHCCCCCEEEE
T ss_conf             76999972467663667


No 237
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.42  E-value=16  Score=16.05  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             233212421012344321128834008999986528765777661368899999986014567
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      ..-+.+|+.-..+|+.|.++ +..+|-++|.+.+-.. ...++.    +.|||.-+.|...+-
T Consensus        15 ~~g~r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~-~~~is~----aTVYR~L~~L~~~gi   71 (145)
T 2fe3_A           15 ETGVRITPQRHAILEYLVNS-MAHPTADDIYKALEGK-FPNMSV----ATVYNNLRVFRESGL   71 (145)
T ss_dssp             HTTCCCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGG-CTTCCH----HHHHHHHHHHHHTTS
T ss_pred             HCCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHH-CCCCCH----HHHHHHHHHHHHHHC
T ss_conf             86998599999999999858-9999999999999850-789888----899999999985521


No 238
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.11  E-value=16  Score=16.13  Aligned_cols=16  Identities=13%  Similarity=0.119  Sum_probs=7.2

Q ss_pred             CCCCCCCCHHHHHHHH
Q ss_conf             3212421012344321
Q gi|254780526|r  146 VFPLPRRERRILEYLM  161 (223)
Q Consensus       146 ~i~LT~~E~~lL~~L~  161 (223)
                      .+.||++=.+++.-+.
T Consensus        94 ~v~LT~~G~~~~~~~~  109 (155)
T 1s3j_A           94 DLSLTDEGDIKFEEVL  109 (155)
T ss_dssp             EEEECHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
T ss_conf             0024898999999999


No 239
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=39.70  E-value=18  Score=15.76  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             124210123443211-28834008999986528765777661368899999986014567
Q gi|254780526|r  148 PLPRRERRILEYLMA-NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~-~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      .|+++|..|+..-.- ..+++.|-.+|.+.+      .++...|...-.+--+||+....
T Consensus        18 ~L~~rEr~Il~~ryGl~~~~~~tl~eIa~~l------gvSrerVRQie~~Al~kLr~~~~   71 (81)
T 1tlh_B           18 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQF------DVTRERIRQIEAKALRKLRHPSR   71 (81)
T ss_dssp             TCCHHHHHHHHHHTCCCTTSCCCHHHHHHHH------HHHHHHHHHHHHHHHHHCCSSCC
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHCHHH
T ss_conf             0999999999998278999855799999998------97999999999999999857067


No 240
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=38.78  E-value=19  Score=15.67  Aligned_cols=187  Identities=11%  Similarity=0.093  Sum_probs=85.1

Q ss_pred             HHHHHHHHCCCEEEEE-ECH-HHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHHCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             9999999789889998-285-8999999828996799990078966217-999863101332100002443210000111
Q gi|254780526|r   14 GYIALFGDDGVSLEGF-NSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV-LELPRIIRAHSQVPLIGISDYPSLQTTLDF   90 (223)
Q Consensus        14 ~l~~~L~~~g~~v~~~-~~~-~~~~~l~~~~~~d~~iid~~l~~~~~~g-~~l~~~lr~~~~~pII~lt~~~~~~~~i~~   90 (223)
                      .++..|.+-...+-++ ... .....+....-+|.+++|.-=..-+... ..+++..+...-.|++=+.. .+....-++
T Consensus         9 ~lk~~l~~g~~~~G~~~~~~sp~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~-~~~~~i~~~   87 (256)
T 1dxe_A            9 KFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPT-NEPVIIKRL   87 (256)
T ss_dssp             HHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSS-SCHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCHHHHHHH
T ss_conf             9999998799669987578997999999817999899826879886777999999997179983885688-999999998


Q ss_pred             CCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHH
Q ss_conf             22201000102333332-10000011122222221122----2222222222222222233212----421012344321
Q gi|254780526|r   91 FDSGVDDVVNKPIHHRE-ILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPL----PRRERRILEYLM  161 (223)
Q Consensus        91 l~~GAddyl~KP~~~~e-L~ari~a~lRr~~~~~~~~~----~~~~~~~~~~~~~~~~g~~i~L----T~~E~~lL~~L~  161 (223)
                      |++||++.+.--++..| .-+-+++. | ..+...+--    .....-......-..+.+.+..    |+.=.+=++-.+
T Consensus        88 LD~Ga~GiivP~V~s~eea~~~v~~~-r-ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~qIEt~~av~nldeI~  165 (256)
T 1dxe_A           88 LDIGFYNFLIPFVETKEEAELAVAST-R-YPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIA  165 (256)
T ss_dssp             HHTTCCEEEESCCCSHHHHHHHHHTT-S-CTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHH
T ss_pred             HCCCCCEEEECCCCCHHHHHHHHHHE-E-ECCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCEEHHHHCCHHHHHHHHHHH
T ss_conf             71898977727869999999999745-7-799998787732022213521278999843234102111678998788860


Q ss_pred             CCCCCC---CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             128834---00899998652876577766136889999998601456
Q gi|254780526|r  162 ANRGKR---VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       162 ~~~g~~---vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      .-+|--   +-..+|...+ |.+.. .+.-.+...+.++.++.+..+
T Consensus       166 av~GvD~i~iGp~DLs~sl-G~~g~-~~~p~v~~ai~~v~~~~~~~g  210 (256)
T 1dxe_A          166 ATEGVDGIFVGPSDLAAAL-GHLGN-ASHPDVQKAIQHIFNRASAHG  210 (256)
T ss_dssp             TSTTCCEEEECHHHHHHHT-TCTTC-TTSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEECHHHHHHHC-CCCCC-CCCHHHHHHHHHHHHHHHHCC
T ss_conf             5789852567748898742-88889-898799999999999999859


No 241
>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=37.45  E-value=20  Score=15.54  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHCCCEEEEEECHHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCC
Q ss_conf             99999999997898899982858999-999828996799990078966217999863101-332100002443
Q gi|254780526|r   11 VKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDY   81 (223)
Q Consensus        11 ~~~~l~~~L~~~g~~v~~~~~~~~~~-~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~   81 (223)
                      ++..+...|...|+.+....+.+... .+....+-|++++... .+.....+++++..|+ ...+|+|.+|+.
T Consensus        73 vA~~~~~kl~~lG~~~~~~~d~~~~~~~~~~~~~~DvlI~iS~-SG~T~evi~~~~~ak~~~~~~~vI~IT~~  144 (220)
T 3etn_A           73 IAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISN-SGKTREIVELTQLAHNLNPGLKFIVITGN  144 (220)
T ss_dssp             HHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECS-SSCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             HHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             9999999999839940527817788888515888888999828-99866588889998740468715888605


No 242
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=36.60  E-value=20  Score=15.45  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             12344321128834008999986528765777661368899999986014
Q gi|254780526|r  154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN  203 (223)
Q Consensus       154 ~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~  203 (223)
                      ..+++.|+.+.|  ++-++..+..... +...+..+    +.+|.+.|+.
T Consensus        85 Hrl~e~fL~~lg--i~~~~a~~~A~~i-EH~ls~e~----~~~L~~~Lg~  127 (139)
T 2x4h_A           85 HRVIEILLVNIG--IDKQTACEYSKQF-DYLIPEEI----IDKLYNYLGK  127 (139)
T ss_dssp             HHHHHHHHHHHT--CCHHHHHHHHHHH-GGGSCHHH----HHHHHHHTTC
T ss_pred             HHHHHHHHHHCC--CCHHHHHHHHHHH-HHCCCHHH----HHHHHHHCCC
T ss_conf             999999999949--9989999999887-75289999----9999998189


No 243
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=36.44  E-value=21  Score=15.44  Aligned_cols=45  Identities=9%  Similarity=-0.058  Sum_probs=26.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEE
Q ss_conf             9689709899999999999978988999828589999998289967999
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI   49 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~ii   49 (223)
                      +|.|||=...--..+...|+..|+.+....+.+..    ....+|.+++
T Consensus         6 ~I~IIDyg~GNi~Sv~~aL~~lg~~~~ii~~~~~~----~i~~~d~IIL   50 (555)
T 1jvn_A            6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDF----NISGTSRLIL   50 (555)
T ss_dssp             EEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGC----CSTTCSCEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHH----HHHCCCEEEE
T ss_conf             89999799868999999999869976999687866----8845998999


No 244
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=36.44  E-value=21  Score=15.44  Aligned_cols=70  Identities=13%  Similarity=0.279  Sum_probs=48.5

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             8999999828996799990078966-217999863101332100002443210000111222010001023
Q gi|254780526|r   33 EFEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        33 ~~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
                      +.+..+.......+.++|++-...+ .+-+++++.+.....+|+.+-.+-.+.++..+.+.+||+-.+.-.
T Consensus        37 ~~a~~~~~~g~d~i~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGirs~~~~~~~l~~G~~rvii~s  107 (253)
T 1h5y_A           37 EMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNT  107 (253)
T ss_dssp             HHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEECCC
T ss_conf             99999998699989998510552347528999999997449856983551117767788864898895386


No 245
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=36.37  E-value=21  Score=15.43  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             12421012344321-1288340089999865287657776613688999999860145
Q gi|254780526|r  148 PLPRRERRILEYLM-ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK  204 (223)
Q Consensus       148 ~LT~~E~~lL~~L~-~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~  204 (223)
                      .|+++|..++.+-. -+.+++.|-.+|.+.+      .++...|.....+--+||+..
T Consensus        10 ~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~l------giS~erVrqi~~~al~kLr~~   61 (73)
T 1ku3_A           10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYF------GVTRERIRQIENKALRKLKYH   61 (73)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH
T ss_conf             2999999999998189999987899999998------969999999999999999885


No 246
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis}
Probab=36.11  E-value=12  Score=16.92  Aligned_cols=28  Identities=21%  Similarity=0.149  Sum_probs=15.6

Q ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             00024432100001112220100010233
Q gi|254780526|r   75 LIGISDYPSLQTTLDFFDSGVDDVVNKPI  103 (223)
Q Consensus        75 II~lt~~~~~~~~i~~l~~GAddyl~KP~  103 (223)
                      +|-.|.++ .++..++.+.|||-...-|+
T Consensus       112 iIG~S~h~-~~e~~~a~~~gaDYi~~gpi  139 (221)
T 1yad_A          112 HIGRSVHS-LEEAVQAEKEDADYVLFGHV  139 (221)
T ss_dssp             EEEEEECS-HHHHHHHHHTTCSEEEEECC
T ss_pred             EEEEECCC-HHHHHHHHHCCCCEEEECCC
T ss_conf             89854445-99999998659997830677


No 247
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.07  E-value=21  Score=15.40  Aligned_cols=46  Identities=17%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             1242101234432112883400899998652876577766136889999998601
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR  202 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~  202 (223)
                      .|+++|..++.+..   +.-.|-.+|++.+ |     ++..+|.....+-.+||+
T Consensus       187 ~L~~rer~Ii~~ry---~~~~tl~eIA~~l-g-----iS~~rVrqi~~~Al~kLR  232 (239)
T 1rp3_A          187 KLPEREKLVIQLIF---YEELPAKEVAKIL-E-----TSVSRVSQLKAKALERLR  232 (239)
T ss_dssp             TSCHHHHHHHHHHH---TSCCCHHHHHHHT-T-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH---CCCCCHHHHHHHH-C-----CCHHHHHHHHHHHHHHHH
T ss_conf             79999999999992---6999999999998-9-----599999999999999999


No 248
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=35.83  E-value=21  Score=15.38  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=10.7

Q ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             24210123443211288340089999865
Q gi|254780526|r  149 LPRRERRILEYLMANRGKRVAKTQIFSAI  177 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i  177 (223)
                      ||..+|.+|.++..+ +..++-.+|++.+
T Consensus        37 ls~~q~~iL~~l~~~-~~~~t~~ela~~l   64 (150)
T 3fm5_A           37 LRVRSYSVLVLACEQ-AEGVNQRGVAATM   64 (150)
T ss_dssp             CCHHHHHHHHHHHHS-TTCCCSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHC-CCCCCHHHHHHHH
T ss_conf             799999999999985-9898999999997


No 249
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=35.62  E-value=21  Score=15.36  Aligned_cols=21  Identities=5%  Similarity=0.033  Sum_probs=8.9

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             8970989999999999997898899
Q gi|254780526|r    3 VLIDDRALVKDGYIALFGDDGVSLE   27 (223)
Q Consensus         3 LiVeDd~~~~~~l~~~L~~~g~~v~   27 (223)
                      ++||.|+...+.    +...|+.+.
T Consensus        33 vviD~d~~~~~~----~~~~g~~~v   53 (144)
T 2hmt_A           33 LAVDINEEKVNA----YASYATHAV   53 (144)
T ss_dssp             EEEESCHHHHHT----TTTTCSEEE
T ss_pred             EEEECCHHHHHH----HHHCCCEEE
T ss_conf             999796799999----985397499


No 250
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.22  E-value=19  Score=15.63  Aligned_cols=56  Identities=7%  Similarity=0.007  Sum_probs=33.9

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             33212421012344321128834008999986528765777661368899999986014567
Q gi|254780526|r  145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG  206 (223)
Q Consensus       145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~  206 (223)
                      .-+..|+.-..||+.|.+ .++.+|-++|++.+-.. +..++.    +.|||.-+.|.+.+-
T Consensus         5 ~Glr~T~qR~~Il~~l~~-~~~~~sa~ei~~~l~~~-~~~i~~----aTVYR~L~~L~~~gl   60 (131)
T 2o03_A            5 AGVRSTRQRAAISTLLET-LDDFRSAQELHDELRRR-GENIGL----TTVYRTLQSMASSGL   60 (131)
T ss_dssp             THHHHHHHHHHHHHHHHH-CCSCEEHHHHHHHHHHT-TCCCCH----HHHHHHHHHHHTTTS
T ss_pred             HCCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHHHH-CCCCCH----HHHHHHHHHHHHCCC
T ss_conf             179739999999999980-89998999999999975-889988----899999999986894


No 251
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=34.97  E-value=22  Score=15.29  Aligned_cols=10  Identities=30%  Similarity=0.537  Sum_probs=3.3

Q ss_pred             HHHHHHCCCC
Q ss_conf             9863101332
Q gi|254780526|r   63 LPRIIRAHSQ   72 (223)
Q Consensus        63 l~~~lr~~~~   72 (223)
                      +++.+++++.
T Consensus         8 IL~~L~~d~R   17 (162)
T 3i4p_A            8 ILRILQEDST   17 (162)
T ss_dssp             HHHHHTTCSC
T ss_pred             HHHHHHHCCC
T ss_conf             9999998489


No 252
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=34.51  E-value=22  Score=15.24  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=40.0

Q ss_pred             HHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHCCCCCCEECCCCCCCCCC--CCCCCCC
Q ss_conf             998289967999900789--66217--------------------99986310133210000244321000--0111222
Q gi|254780526|r   38 LQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRAHSQVPLIGISDYPSLQT--TLDFFDS   93 (223)
Q Consensus        38 l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~~~~pII~lt~~~~~~~--~i~~l~~   93 (223)
                      +......-++++.+.+|.  |-.||                    +++++.+|+..++|+++++..+..-.  .-++-++
T Consensus        38 l~~l~~~G~D~iEiGiPfSDP~aDGpvIq~a~~rAl~~g~~~~~~~~~~~~~~~~~~~~~ilm~y~n~~~~~~~~~~~~~  117 (262)
T 1rd5_A           38 LRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEA  117 (262)
T ss_dssp             HHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHT
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf             99999759999996788776555677256531324356700056676654310134676034421156216777777625


Q ss_pred             CCEEEEECCCCCC
Q ss_conf             0100010233333
Q gi|254780526|r   94 GVDDVVNKPIHHR  106 (223)
Q Consensus        94 GAddyl~KP~~~~  106 (223)
                      |+|+.|.-..-++
T Consensus       118 GvdGviipDlp~e  130 (262)
T 1rd5_A          118 GVHGLIVPDLPYV  130 (262)
T ss_dssp             TCCEEECTTCBTT
T ss_pred             CCEEEECCCCHHH
T ss_conf             8204422576056


No 253
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=33.83  E-value=22  Score=15.28  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=27.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             212421012344321128834008999986528765777661368899999986
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK  200 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK  200 (223)
                      ..||..++.+|..|..+++  ++-.+|++.+      .++..++--.|.+|-+|
T Consensus        49 ~gLt~~q~~vL~~l~~~~~--~t~~~la~~l------~i~~~~vs~~i~~L~~~   94 (161)
T 3e6m_A           49 EKLPTPKLRLLSSLSAYGE--LTVGQLATLG------VMEQSTTSRTVDQLVDE   94 (161)
T ss_dssp             HTCCHHHHHHHHHHHHHSE--EEHHHHHHHT------TCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHHC
T ss_conf             6979999999999997799--8999999998------97887999999999838


No 254
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=33.76  E-value=23  Score=15.17  Aligned_cols=41  Identities=15%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2101234432112883400899998652876577766136889999998
Q gi|254780526|r  151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK  199 (223)
Q Consensus       151 ~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk  199 (223)
                      +.-+.||..|+.+++  .+-.+|.+.+      ..+..|+-.|++.|++
T Consensus        24 p~Rl~Il~~L~~~~~--~~v~eLa~~l------~~s~stvS~HL~~L~~   64 (99)
T 3cuo_A           24 PKRLLILCMLSGSPG--TSAGELTRIT------GLSASATSQHLARMRD   64 (99)
T ss_dssp             HHHHHHHHHHTTCCS--EEHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC--EEHHHHHHHH------CCCHHHHHHHHHHHHH
T ss_conf             999999999858999--0799977455------8598799999999998


No 255
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=32.07  E-value=24  Score=15.04  Aligned_cols=19  Identities=11%  Similarity=0.081  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999999999978988999
Q gi|254780526|r    9 ALVKDGYIALFGDDGVSLEG   28 (223)
Q Consensus         9 ~~~~~~l~~~L~~~g~~v~~   28 (223)
                      +.+|. ..+.|++.||-...
T Consensus        53 ATIRN-~Ma~LE~~G~L~qp   71 (338)
T 1stz_A           53 ATIRN-DMKKLEYLGYIYQP   71 (338)
T ss_dssp             HHHHH-HHHHHHHTTSEECC
T ss_pred             HHHHH-HHHHHHHCCCCCCC
T ss_conf             88999-99999978671589


No 256
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=31.95  E-value=24  Score=14.98  Aligned_cols=12  Identities=17%  Similarity=0.097  Sum_probs=5.9

Q ss_pred             HHHCCCCEEEEE
Q ss_conf             982899679999
Q gi|254780526|r   39 QSSAREDVSAIE   50 (223)
Q Consensus        39 ~~~~~~d~~iid   50 (223)
                      .....+|+++.-
T Consensus        86 l~~~~~d~I~~g   97 (273)
T 2xed_A           86 IADAAPEVILYA   97 (273)
T ss_dssp             HHTTCCSEEEEC
T ss_pred             HHCCCCCEEEEE
T ss_conf             420466778870


No 257
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=31.61  E-value=25  Score=14.95  Aligned_cols=56  Identities=14%  Similarity=-0.008  Sum_probs=31.0

Q ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             967999900789662179998631013321000024432100001112220100010
Q gi|254780526|r   44 EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN  100 (223)
Q Consensus        44 ~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~  100 (223)
                      ...+=+..+-..=++ .++.++..|+..++||+.=-=--++.+..++..+|||..+.
T Consensus        74 A~aISVLTe~~~F~G-s~~~l~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADavLL  129 (251)
T 1i4n_A           74 ADAISILTEKHYFKG-DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILI  129 (251)
T ss_dssp             CSEEEEECCCSSSCC-CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCCCCC-CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             977899646676899-78889999861466206643635099968999769989998


No 258
>3cni_A Putative ABC type-2 transporter; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima MSB8}
Probab=31.34  E-value=25  Score=14.92  Aligned_cols=69  Identities=9%  Similarity=-0.011  Sum_probs=46.0

Q ss_pred             EEEEC-CCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC
Q ss_conf             68970-9899999999999978988999828589999998289967999900789662179998631013321000024
Q gi|254780526|r    2 FVLID-DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS   79 (223)
Q Consensus         2 ILiVe-Dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt   79 (223)
                      |-||| |.-.+.+.+...|....+.+....+.+++.......+.+.++++   | +   +|+  +.+....+.+|-+.+
T Consensus        13 iaivd~D~s~~s~~~~~~L~~~~~~~~~~~d~~eA~~~l~~g~~~~vivI---P-~---~Fs--~~l~~g~~~~I~v~~   82 (156)
T 3cni_A           13 VAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIVI---P-K---GFS--QSLESGEKARLEIVW   82 (156)
T ss_dssp             EEEEECCCSHHHHHHHHHHHTSSEEEEEESCHHHHHHHHHHHTCSEEEEE---C-T---THH--HHHHHTCCEEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEE---C-C---CHH--HHHHCCCCCEEEEEE
T ss_conf             99998999979999999861699658997999999999983986799998---8-3---478--998779997589999


No 259
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.01  E-value=25  Score=14.86  Aligned_cols=55  Identities=9%  Similarity=0.101  Sum_probs=26.3

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             23321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      ..-+.+|+.-..||++|.++ +. +|-++|.+.+-.. ...++..    .|||.-..|...+
T Consensus        12 ~~g~r~T~~R~~Il~~L~~~-~~-~ta~ei~~~l~~~-~~~i~~~----TVYR~L~~L~~~G   66 (145)
T 3eyy_A           12 QRGYRLTPQRQLVLEAVDTL-EH-ATPDDILGEVRKT-ASGINIS----TVYRTLELLEELG   66 (145)
T ss_dssp             TTTCCCCHHHHHHHHHHHHH-SS-BCHHHHHHHHHTT-CTTCCHH----HHHHHHHHHHHHT
T ss_pred             HCCCCCCHHHHHHHHHHHHC-CC-CCHHHHHHHHHHH-CCCCCHH----HHHHHHHHHHHHH
T ss_conf             86999699999999999737-99-8999999999975-8887658----9999999999865


No 260
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=29.90  E-value=26  Score=14.77  Aligned_cols=21  Identities=14%  Similarity=0.034  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999999999997898899982
Q gi|254780526|r   10 LVKDGYIALFGDDGVSLEGFN   30 (223)
Q Consensus        10 ~~~~~l~~~L~~~g~~v~~~~   30 (223)
                      .+...|+..|.+.|+.|.+++
T Consensus        21 ~v~~~La~aL~~~Gh~V~Vit   41 (485)
T 1rzu_A           21 DVVGALPIALEAHGVRTRTLI   41 (485)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEE
T ss_conf             999999999997699799996


No 261
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=29.87  E-value=13  Score=16.65  Aligned_cols=14  Identities=14%  Similarity=0.240  Sum_probs=6.9

Q ss_pred             CCCCHHHHHHHHHC
Q ss_conf             83400899998652
Q gi|254780526|r  165 GKRVAKTQIFSAIY  178 (223)
Q Consensus       165 g~~vsr~~l~~~iw  178 (223)
                      |=+.|-++..+.+.
T Consensus       249 GGI~s~~Da~e~i~  262 (311)
T 1jub_A          249 GGIETGQDAFEHLL  262 (311)
T ss_dssp             SSCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             68599999999998


No 262
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=28.96  E-value=27  Score=14.66  Aligned_cols=13  Identities=31%  Similarity=0.394  Sum_probs=5.1

Q ss_pred             HHHHHHCCCCCCE
Q ss_conf             9863101332100
Q gi|254780526|r   63 LPRIIRAHSQVPL   75 (223)
Q Consensus        63 l~~~lr~~~~~pI   75 (223)
                      +++.+++++..|+
T Consensus        12 Il~~L~~n~R~s~   24 (150)
T 2w25_A           12 LVRELAADGRATL   24 (150)
T ss_dssp             HHHHHHHCTTCCH
T ss_pred             HHHHHHHCCCCCH
T ss_conf             9999998389999


No 263
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259} PDB: 3ii8_A* 3n3t_A*
Probab=27.72  E-value=22  Score=15.29  Aligned_cols=15  Identities=13%  Similarity=0.195  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             766136889999998
Q gi|254780526|r  185 VEENVVESHISKLRK  199 (223)
Q Consensus       185 ~~~~tv~~~I~rLRk  199 (223)
                      .-+.+.+....-+++
T Consensus       264 ~~P~~~~~~~~~l~~  278 (294)
T 2r6o_A          264 STPQAADAFASLLDR  278 (294)
T ss_dssp             CCCEEHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             346999999999985


No 264
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1
Probab=27.27  E-value=21  Score=15.31  Aligned_cols=60  Identities=22%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             99828996799990078966217999863101-332100002443210000111222010001
Q gi|254780526|r   38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV   99 (223)
Q Consensus        38 l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl   99 (223)
                      .+...-.|++++|.--. -.....+.++.+|. .+++|||.-.- .+.+......++|||...
T Consensus       244 ~Lv~aGvD~ivID~Ahg-hs~~~~~~i~~ik~~~~~~~viaGnv-~t~~~a~~L~~aGad~i~  304 (494)
T 1vrd_A          244 KLVKAGVDVIVIDTAHG-HSRRVIETLEMIKADYPDLPVVAGNV-ATPEGTEALIKAGADAVK  304 (494)
T ss_dssp             HHHHTTCSEEEECCSCC-SSHHHHHHHHHHHHHCTTSCEEEEEE-CSHHHHHHHHHTTCSEEE
T ss_pred             HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCCCCEEEEEE-CCHHHHHHHHHHCCCEEE
T ss_conf             99976998999954664-37999999999998689986797532-429999999983988888


No 265
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=27.01  E-value=29  Score=14.45  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             CCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEC
Q ss_conf             88340-08999986528765777661368899999986014567771577868630313
Q gi|254780526|r  164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID  221 (223)
Q Consensus       164 ~g~~v-sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~  221 (223)
                      +|.-+ |-.+|++.+      .++..||.--+..|.       ...+|.+.+|.||..-
T Consensus        33 ~G~~LPser~La~~~------~VSr~tVr~Al~~L~-------~~Glv~~~~g~G~~V~   78 (125)
T 3neu_A           33 GEDKLPSVREMGVKL------AVNPNTVSRAYQELE-------RAGYIYAKRGMGSFVT   78 (125)
T ss_dssp             TTCBCCCHHHHHHHH------TCCHHHHHHHHHHHH-------HTTSEEEETTTEEEEC
T ss_pred             CCCCCCCHHHHHHHH------CCCHHHHHHHHHHHH-------HCCCEEEECCCEEEEC
T ss_conf             969995499999993------928899999999999-------8891799638679980


No 266
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=26.58  E-value=30  Score=14.40  Aligned_cols=12  Identities=17%  Similarity=-0.050  Sum_probs=5.9

Q ss_pred             CEEEECCCCEEE
Q ss_conf             157786863031
Q gi|254780526|r  209 PVDSKRFLGYSI  220 (223)
Q Consensus       209 ~I~tvrg~GY~l  220 (223)
                      +|.+.+|.||..
T Consensus        64 li~~~~g~G~~V   75 (126)
T 3by6_A           64 VIRTIPGKGTFI   75 (126)
T ss_dssp             SEEEETTTEEEE
T ss_pred             CEEEECCCEEEE
T ss_conf             279973815898


No 267
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=26.54  E-value=30  Score=14.40  Aligned_cols=21  Identities=24%  Similarity=-0.010  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999999999997898899982
Q gi|254780526|r   10 LVKDGYIALFGDDGVSLEGFN   30 (223)
Q Consensus        10 ~~~~~l~~~L~~~g~~v~~~~   30 (223)
                      .+...|...|.+.|+.|.++.
T Consensus        21 ~~v~~L~~aL~~~Gh~V~Vit   41 (485)
T 2qzs_A           21 DVIGALPAAQIADGVDARVLL   41 (485)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEE
T ss_conf             999999999997699799996


No 268
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.10  E-value=31  Score=14.34  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             124210123443211-2883400899998652876577766136889999998601456
Q gi|254780526|r  148 PLPRRERRILEYLMA-NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~-~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
                      .|+++|..++..-+- +.+.+.|-++|.+.+      .++.-.|...-.+-.+||+...
T Consensus        18 ~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~l------giSreRVRQie~~Al~kLr~~~   70 (87)
T 1tty_A           18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYF------NVTRERIRQIEVKALRKLRHPS   70 (87)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHHHBTTB
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHCCH
T ss_conf             4999999999998078899965799999895------9889999999999999986707


No 269
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=25.08  E-value=32  Score=14.23  Aligned_cols=52  Identities=15%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEC
Q ss_conf             1012344321128834008999986528765777661368899999986014567771577868630313
Q gi|254780526|r  152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID  221 (223)
Q Consensus       152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~  221 (223)
                      .-..||.+|..  +  .+-.+|.+.+      ..+..|+.-|+..|++       ..+|+... -||++-
T Consensus        32 ~R~~IL~~L~~--~--~~~~eLa~~l------g~s~stvs~HL~~L~~-------aGLV~~~~-~~y~lt   83 (96)
T 1y0u_A           32 VRRKILRMLDK--G--RSEEEIMQTL------SLSKKQLDYHLKVLEA-------GFCIERVG-ERWVVT   83 (96)
T ss_dssp             HHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHH-------TTSEEEET-TEEEEC
T ss_pred             HHHHHHHHHCC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHH-------CCCEEEEC-CEEEEC
T ss_conf             99999998357--9--9799999998------9199899999999998-------89679847-989986


No 270
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A*
Probab=24.69  E-value=19  Score=15.67  Aligned_cols=13  Identities=15%  Similarity=0.202  Sum_probs=5.9

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             8340089999865
Q gi|254780526|r  165 GKRVAKTQIFSAI  177 (223)
Q Consensus       165 g~~vsr~~l~~~i  177 (223)
                      |=+.|-++..+.+
T Consensus       352 GGI~s~~DA~e~i  364 (415)
T 3i65_A          352 GGIFSGLDALEKI  364 (415)
T ss_dssp             SSCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             9989999999999


No 271
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=24.15  E-value=33  Score=14.12  Aligned_cols=96  Identities=10%  Similarity=0.077  Sum_probs=54.7

Q ss_pred             HHHHHHHHHCCCEEEEE-EC-HHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHHCCCCCCEECCCCCCCCCCCCC
Q ss_conf             99999999789889998-28-58999999828996799990078966217-99986310133210000244321000011
Q gi|254780526|r   13 DGYIALFGDDGVSLEGF-NS-LEFEEWLQSSAREDVSAIEAFLIGKGEKV-LELPRIIRAHSQVPLIGISDYPSLQTTLD   89 (223)
Q Consensus        13 ~~l~~~L~~~g~~v~~~-~~-~~~~~~l~~~~~~d~~iid~~l~~~~~~g-~~l~~~lr~~~~~pII~lt~~~~~~~~i~   89 (223)
                      +.++..|++....+-.+ .. ....-.+....-+|.+++|.-=..-+... ..+++..+...-.|++=+.. .+.....+
T Consensus         7 N~lk~kL~~g~~~~G~~~~~~sp~~~e~l~~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~vRvp~-~~~~~i~r   85 (267)
T 2vws_A            7 NPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVE-GSKPLIKQ   85 (267)
T ss_dssp             CHHHHHHHTTCCEEEEEECSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSS-CCHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC-CCHHHHHH
T ss_conf             79999998799879988789997999999837989999816689888999999998861469974587147-84799999


Q ss_pred             CCCCCCEEEEECCCCCCCCC
Q ss_conf             12220100010233333210
Q gi|254780526|r   90 FFDSGVDDVVNKPIHHREIL  109 (223)
Q Consensus        90 ~l~~GAddyl~KP~~~~eL~  109 (223)
                      +|++||++-+.--++..|=.
T Consensus        86 ~LD~Ga~GIivP~v~s~eea  105 (267)
T 2vws_A           86 VLDIGAQTLLIPMVDTAEQA  105 (267)
T ss_dssp             HHHTTCCEEEECCCCSHHHH
T ss_pred             HHHCCCCEEEECCCCCHHHH
T ss_conf             98389988998994999999


No 272
>3dqq_A Putative tRNA synthase; structural genomics, csgid, unknown function, center for structural genomics of infectious diseases; 2.70A {Salmonella typhimurium}
Probab=23.96  E-value=34  Score=14.09  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECC-CCCCHH
Q ss_conf             68970989999999999997898899982858999999828996799990078-966217
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV   60 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~-~~~~~g   60 (223)
                      |+|+.||..=+......|...|+.+..+.+.....   .....|+++++.+-. +|....
T Consensus         5 i~iiADDlTGA~dt~~~~~~~G~~t~v~~~~~~~~---~~~~~dvvvi~t~SR~l~~~eA   61 (421)
T 3dqq_A            5 IGVIADDFTGATDIASFLVENGMPTVQINDVPTGT---QPEGCDAVVISLKTRSCPAQEA   61 (421)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTCCEEEEESSCCSC---CCSSCSEEEEECSCSSSCHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC---CCCCCCEEEEECCCCCCCHHHH
T ss_conf             99993385218999999998798399985688755---5678988999888789999999


No 273
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=23.92  E-value=32  Score=14.18  Aligned_cols=64  Identities=5%  Similarity=-0.220  Sum_probs=31.4

Q ss_pred             EECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             9709899999999999978988-9998285899999982899679999007896621799986310133
Q gi|254780526|r    4 LIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS   71 (223)
Q Consensus         4 iVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~   71 (223)
                      -||-++...+.....++..|+. |.. -.++.........+||.+++...++.  .. -.+.++++.+.
T Consensus       105 ~iE~~~~l~~~A~~~l~~~g~~nv~~-~~gD~~~g~~~~~~fD~Iiv~~~~~~--ip-~~l~~qLkpGG  169 (317)
T 1dl5_A          105 SVEYSRKICEIAKRNVERLGIENVIF-VCGDGYYGVPEFSPYDVIFVTVGVDE--VP-ETWFTQLKEGG  169 (317)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCCSEEE-EESCGGGCCGGGCCEEEEEECSBBSC--CC-HHHHHHEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHHCCCCEEE-EECCHHHCCCCCCCCCEEEECCCHHH--HH-HHHHHHCCCCC
T ss_conf             99578178999999899735787399-98955758877899419999687688--58-99998438893


No 274
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A
Probab=23.74  E-value=14  Score=16.57  Aligned_cols=43  Identities=7%  Similarity=-0.110  Sum_probs=21.5

Q ss_pred             HHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             7999863101332100002443210000111222010001023
Q gi|254780526|r   60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP  102 (223)
Q Consensus        60 g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP  102 (223)
                      .++.++++|+...+||..=-...+..+....++.||.|++.+.
T Consensus       287 ~~~~l~~lr~~~~iPIa~gE~~~~~~~~~~~i~~~a~Div~~d  329 (470)
T 3p0w_A          287 GREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLAD  329 (470)
T ss_dssp             HHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             6999999986169884457664778888887645764099977


No 275
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Probab=23.56  E-value=20  Score=15.53  Aligned_cols=14  Identities=14%  Similarity=0.218  Sum_probs=7.4

Q ss_pred             CCCCHHHHHHHHHC
Q ss_conf             83400899998652
Q gi|254780526|r  165 GKRVAKTQIFSAIY  178 (223)
Q Consensus       165 g~~vsr~~l~~~iw  178 (223)
                      |=+.|-++..+.+.
T Consensus       284 GGI~s~~Da~e~i~  297 (354)
T 3gz3_A          284 GGVYTGEDAFLHVL  297 (354)
T ss_dssp             SSCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             68599999999998


No 276
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A*
Probab=23.51  E-value=19  Score=15.67  Aligned_cols=16  Identities=19%  Similarity=0.183  Sum_probs=8.6

Q ss_pred             CCCCCCHHHHHHHHHC
Q ss_conf             2883400899998652
Q gi|254780526|r  163 NRGKRVAKTQIFSAIY  178 (223)
Q Consensus       163 ~~g~~vsr~~l~~~iw  178 (223)
                      ..|=+.|-++..+.+.
T Consensus       249 g~GGI~s~~Da~e~i~  264 (314)
T 2e6f_A          249 GCGGVYSGEDAFLHIL  264 (314)
T ss_dssp             EESSCCSHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHH
T ss_conf             7178589999999998


No 277
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=23.37  E-value=34  Score=14.02  Aligned_cols=50  Identities=16%  Similarity=0.138  Sum_probs=33.2

Q ss_pred             HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC--CCCCCEECCCCCCCC
Q ss_conf             99999828996799990078966217999863101--332100002443210
Q gi|254780526|r   35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA--HSQVPLIGISDYPSL   84 (223)
Q Consensus        35 ~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~--~~~~pII~lt~~~~~   84 (223)
                      .........+|++++--|+...+.+.-+.+..++.  ....|++++.+..|.
T Consensus        24 ~l~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~   75 (228)
T 1uf3_A           24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDA   75 (228)
T ss_dssp             HHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSC
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             9998777299999987886999878299999999740457758999689981


No 278
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=23.32  E-value=12  Score=16.90  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCCCCHHHHHHHHCCCC--CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             24210123443211288--3400899998652876577766136889999998601
Q gi|254780526|r  149 LPRRERRILEYLMANRG--KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR  202 (223)
Q Consensus       149 LT~~E~~lL~~L~~~~g--~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~  202 (223)
                      .+.+| +++.+|.+.++  .-+|+++|++.+      .+++.    +++|+||||-
T Consensus       149 ~~~~~-R~~~~l~~~~~i~~~~t~~~iA~~l------G~sr~----tlSRi~k~l~  193 (194)
T 3dn7_A          149 YSKEE-QYHNFSSRFPEFIQRVPQYLLASYL------GFTPE----YLSEIRKKYI  193 (194)
T ss_dssp             C-------------------------------------------------------
T ss_pred             CCHHH-HHHHHHHHCCCCCCCCCHHHHHHHH------CCCHH----HHHHHHHHHC
T ss_conf             88999-9999998692535697999999997------99899----9999999862


No 279
>1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 1jct_A* 1bqg_A
Probab=23.21  E-value=14  Score=16.44  Aligned_cols=45  Identities=9%  Similarity=-0.112  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             179998631013321000024432100001112220100010233
Q gi|254780526|r   59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI  103 (223)
Q Consensus        59 ~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~  103 (223)
                      ...+.+.++|+...+||..=-...+..+....++.||.|++.|+.
T Consensus       270 ~~~~~l~~lr~~~~iPIa~gE~~~~~~~~~~~i~~~a~Di~~~d~  314 (446)
T 1ec7_A          270 SGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP  314 (446)
T ss_dssp             CHHHHHHHHHHHHCCCEEESSSCSSHHHHHHHHHHTCCSEEBCCH
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf             115787777414897700013536534554554157626997162


No 280
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=22.83  E-value=35  Score=13.96  Aligned_cols=20  Identities=5%  Similarity=-0.134  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHCCCEEEEEEC
Q ss_conf             99999999978988999828
Q gi|254780526|r   12 KDGYIALFGDDGVSLEGFNS   31 (223)
Q Consensus        12 ~~~l~~~L~~~g~~v~~~~~   31 (223)
                      +..+...|...|..+....+
T Consensus        60 a~~~~~kl~~lG~~~~~~~d   79 (201)
T 3fxa_A           60 AKKLVHSFNCIERPAVFLTP   79 (201)
T ss_dssp             HHHHHHHHHHTTCCEEECCH
T ss_pred             HHHHHHHHHHCCCCEEECCC
T ss_conf             99999999868996585793


No 281
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=22.11  E-value=36  Score=13.86  Aligned_cols=58  Identities=14%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             982899679999007896621799986310133210000244321000011122201000
Q gi|254780526|r   39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV   98 (223)
Q Consensus        39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddy   98 (223)
                      +.....|++++|.--. ....-.+.+++++...++|||+ ..-.+.+.....+++|||..
T Consensus       152 l~~aGvd~ivID~Ahg-~s~~~~~~ik~~k~~~~v~VIa-GNV~T~e~a~~L~~aGAD~V  209 (400)
T 3ffs_A          152 LVEAGVDVIVLDSAHG-HSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGI  209 (400)
T ss_dssp             HHHHTCSEEEECCSCC-SBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTCSEE
T ss_pred             HHHCCCCEEEECCCCC-CCCCHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCCCEE
T ss_conf             9875997797546554-3210678999988637963999-42178999999998099856


No 282
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=21.98  E-value=23  Score=15.18  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=8.5

Q ss_pred             CCCCCHHHHHHHHHC
Q ss_conf             883400899998652
Q gi|254780526|r  164 RGKRVAKTQIFSAIY  178 (223)
Q Consensus       164 ~g~~vsr~~l~~~iw  178 (223)
                      .|=+.|-++..+.+-
T Consensus       281 ~GGI~s~~Da~e~i~  295 (345)
T 3oix_A          281 TGGVXTGRDAFEHIL  295 (345)
T ss_dssp             ESSCCSHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHH
T ss_conf             758799999999998


No 283
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=21.96  E-value=35  Score=13.99  Aligned_cols=58  Identities=17%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             HHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9828996799990078966217999863101-33210000244321000011122201000
Q gi|254780526|r   39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDV   98 (223)
Q Consensus        39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddy   98 (223)
                      +.....|++++|.--. -...-.++++.+|. .+++|||.=-- .+.+......++|||..
T Consensus       263 Lv~aG~d~iviD~Ahg-~s~~v~~~ik~ik~~~~~~~iiaGNV-aT~~~~~~L~~aGad~v  321 (514)
T 1jcn_A          263 LTQAGVDVIVLDSSQG-NSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGL  321 (514)
T ss_dssp             HHHTTCSEEEECCSCC-CSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEE
T ss_pred             HHHCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEEE-CCHHHHHHHHHHCCCEE
T ss_conf             9853897799623451-27789999999997689971886312-36999999998388889


No 284
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=21.86  E-value=27  Score=14.69  Aligned_cols=57  Identities=26%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             HCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             28996799990078966217999863101-332100002443210000111222010001
Q gi|254780526|r   41 SAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV   99 (223)
Q Consensus        41 ~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl   99 (223)
                      ..--|++++|.--. -......+++.+|. .+++|||.- .-.+.+......++|||...
T Consensus       243 ~aGvDvivid~Ahg-~s~~~~~~i~~i~~~~~~~~viaG-NV~t~~~a~~L~~~Gad~v~  300 (491)
T 1zfj_A          243 EAGADAIVIDTAHG-HSAGVLRKIAEIRAHFPNRTLIAG-NIATAEGARALYDAGVDVVK  300 (491)
T ss_dssp             HHTCSEEEECCSCT-TCHHHHHHHHHHHHHCSSSCEEEE-EECSHHHHHHHHHTTCSEEE
T ss_pred             HCCCCEEEEECCCC-CCCHHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHHHHCCHHEE
T ss_conf             74898799953567-763257899998753577763799-60679999999984731225


No 285
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=21.75  E-value=37  Score=13.82  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=46.2

Q ss_pred             HHHHHHHHHCCCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCC
Q ss_conf             9999999978988-999828589999-99828996799990078966217999863101-33210000244321000011
Q gi|254780526|r   13 DGYIALFGDDGVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLD   89 (223)
Q Consensus        13 ~~l~~~L~~~g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~   89 (223)
                      +.+...|.+.+.- |....+.+.+.. ........+-++.+.+..|  +.++.++.+++ .+++-|=.=|- -+.++.-+
T Consensus         8 ~~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEITl~t~--~a~~~i~~l~~~~p~~~vGaGTV-l~~~~~~~   84 (224)
T 1vhc_A            8 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSE--AAADAIRLLRANRPDFLIAAGTV-LTAEQVVL   84 (224)
T ss_dssp             HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST--THHHHHHHHHHHCTTCEEEEESC-CSHHHHHH
T ss_pred             HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECC-CCHHHHHH
T ss_conf             9999999978979999689999999999999987998899968980--39999999998689918962020-45799999


Q ss_pred             CCCCCCEEEEECCCCCCCCCC
Q ss_conf             122201000102333332100
Q gi|254780526|r   90 FFDSGVDDVVNKPIHHREILA  110 (223)
Q Consensus        90 ~l~~GAddyl~KP~~~~eL~a  110 (223)
                      +.++||+ |+.-|.-.++++.
T Consensus        85 a~~aGA~-FivSP~~~~~v~~  104 (224)
T 1vhc_A           85 AKSSGAD-FVVTPGLNPKIVK  104 (224)
T ss_dssp             HHHHTCS-EEECSSCCHHHHH
T ss_pred             HHHHCCC-EEECCCCCHHHHH
T ss_conf             9983799-8972789999999


No 286
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=21.46  E-value=26  Score=14.82  Aligned_cols=56  Identities=14%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             996799990078966217999863101-3321000024432100001112220100010
Q gi|254780526|r   43 REDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVN  100 (223)
Q Consensus        43 ~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl~  100 (223)
                      ..+++++|+.= .-...-.+.++.+|+ .+++|||.=. -.+.+.....+++|||...+
T Consensus       132 ~v~~i~IDvAh-Gh~~~~~~~i~~vk~~~~~~~VIaGN-V~T~e~~~~L~~aGAD~VkV  188 (351)
T 2c6q_A          132 QVKYICLDVAN-GYSEHFVEFVKDVRKRFPQHTIMAGN-VVTGEMVEELILSGADIIKV  188 (351)
T ss_dssp             TCCEEEEECSC-TTBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHHHCCCCEEEE
T ss_conf             97199841466-66656777899999878987479863-31289999998667864897


No 287
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=21.33  E-value=32  Score=14.22  Aligned_cols=60  Identities=22%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             99828996799990078966217999863101-332100002443210000111222010001
Q gi|254780526|r   38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV   99 (223)
Q Consensus        38 l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl   99 (223)
                      .+.....|++++|.-- .....-.++++.+|+ .+++|||.=. -.+.+.....+++|||...
T Consensus       160 ~Lv~agvD~ivID~ah-g~s~~~~~~ik~ik~~~p~~~VIaGN-V~T~e~a~~L~~~GAD~Vk  220 (404)
T 1eep_A          160 ELVKAHVDILVIDSAH-GHSTRIIELIKKIKTKYPNLDLIAGN-IVTKEAALDLISVGADCLK  220 (404)
T ss_dssp             HHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHTTTCSEEE
T ss_pred             HHHHCCCCEEEECCCC-CCHHHHHHHHHHHHHHCCCCCEECCC-CCCHHHHHHHHHCCCCEEE
T ss_conf             9986368777511456-65588999999999878998677145-5569999999975999667


No 288
>1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} SCOP: c.1.4.1 PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* 3kvm_A* 2b0m_A* 1uum_A* ...
Probab=21.03  E-value=21  Score=15.31  Aligned_cols=13  Identities=15%  Similarity=0.217  Sum_probs=5.4

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             8340089999865
Q gi|254780526|r  165 GKRVAKTQIFSAI  177 (223)
Q Consensus       165 g~~vsr~~l~~~i  177 (223)
                      |=+.+-++..+.+
T Consensus       305 GGI~s~~Da~e~i  317 (367)
T 1d3g_A          305 GGVSSGQDALEKI  317 (367)
T ss_dssp             SSCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             9949999999999


No 289
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=20.89  E-value=39  Score=13.71  Aligned_cols=14  Identities=7%  Similarity=0.259  Sum_probs=6.4

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             21242101234432
Q gi|254780526|r  147 FPLPRRERRILEYL  160 (223)
Q Consensus       147 i~LT~~E~~lL~~L  160 (223)
                      +.||++=.+++...
T Consensus        97 l~LT~~G~~~~~~~  110 (151)
T 3kp7_A           97 IKLSNKGKKYIKER  110 (151)
T ss_dssp             BEECHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
T ss_conf             04678899999999


No 290
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=20.46  E-value=39  Score=13.65  Aligned_cols=16  Identities=19%  Similarity=0.125  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCCCEEEE
Q ss_conf             0000111222010001
Q gi|254780526|r   84 LQTTLDFFDSGVDDVV   99 (223)
Q Consensus        84 ~~~~i~~l~~GAddyl   99 (223)
                      .++..++.++|||..+
T Consensus       195 ~~~a~~~~~~Gad~i~  210 (332)
T 1vcf_A          195 REAALALRDLPLAAVD  210 (332)
T ss_dssp             HHHHHHHTTSCCSEEE
T ss_pred             HHHHHHHHHCCCCEEE
T ss_conf             9999999976999999


No 291
>2zru_A Isopentenyl-diphosphate delta-isomerase; type 2, IDI, FMN, isopentenyl diphosphate isomerase, cytoplasm, flavoprotein, isoprene biosynthesis; HET: FMN; 2.00A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
Probab=20.15  E-value=27  Score=14.69  Aligned_cols=42  Identities=24%  Similarity=0.275  Sum_probs=25.8

Q ss_pred             HHHHHHHHHCCCCCCEEC--CCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             799986310133210000--244321000011122201000102
Q gi|254780526|r   60 VLELPRIIRAHSQVPLIG--ISDYPSLQTTLDFFDSGVDDVVNK  101 (223)
Q Consensus        60 g~~l~~~lr~~~~~pII~--lt~~~~~~~~i~~l~~GAddyl~K  101 (223)
                      ..+.++.+++....|+++  .....+.++...+.++|||.-+..
T Consensus       175 ~~~~i~~l~~~~~~pvivK~i~~~~~~e~a~~~~~~Gad~I~Vs  218 (368)
T 2zru_A          175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTS  218 (368)
T ss_dssp             HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             59999999987599847986267743999999998189979998


No 292
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=20.03  E-value=40  Score=13.59  Aligned_cols=28  Identities=32%  Similarity=0.458  Sum_probs=13.3

Q ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             00024432100001112220100010233
Q gi|254780526|r   75 LIGISDYPSLQTTLDFFDSGVDDVVNKPI  103 (223)
Q Consensus        75 II~lt~~~~~~~~i~~l~~GAddyl~KP~  103 (223)
                      ++..|.+ +.++...+.+.|||-...-|+
T Consensus       110 ~ig~s~h-~~~e~~~a~~~g~DYi~~gpv  137 (215)
T 1xi3_A          110 IIGASVY-SLEEALEAEKKGADYLGAGSV  137 (215)
T ss_dssp             EEEEEES-SHHHHHHHHHHTCSEEEEECS
T ss_pred             EEEECCC-HHHHHHHHHHCCCCEEEECCC
T ss_conf             8985066-599999998769988996244


Done!