Query gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 223 No_of_seqs 142 out of 20159 Neff 8.5 Searched_HMMs 23785 Date Wed Jun 1 00:03:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780526.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oqr_A Sensory transduction pr 100.0 0 0 357.9 14.0 217 2-221 7-229 (230) 2 2gwr_A DNA-binding response re 100.0 0 0 354.0 15.5 218 2-222 8-227 (238) 3 1ys7_A Transcriptional regulat 100.0 0 0 347.6 17.0 218 2-222 10-232 (233) 4 1kgs_A DRRD, DNA binding respo 100.0 0 0 343.0 14.4 218 2-222 5-224 (225) 5 2hqr_A Putative transcriptiona 100.0 0 0 334.2 13.8 212 2-222 3-216 (223) 6 1p2f_A Response regulator; DRR 100.0 0 0 325.3 12.8 211 2-222 5-217 (220) 7 1yio_A Response regulatory pro 100.0 5.4E-31 2.3E-35 214.3 4.6 190 2-213 7-197 (208) 8 1a04_A Nitrate/nitrite respons 100.0 8.5E-30 3.6E-34 206.8 10.3 192 2-206 8-202 (215) 9 2qzj_A Two-component response 99.9 2.2E-26 9.3E-31 185.3 7.9 118 2-121 7-124 (136) 10 1zh2_A KDP operon transcriptio 99.9 2.6E-26 1.1E-30 184.9 7.2 117 2-120 4-120 (121) 11 3gt7_A Sensor protein; structu 99.9 8.5E-26 3.6E-30 181.6 8.3 120 2-123 10-132 (154) 12 1s8n_A Putative antiterminator 99.9 1.4E-25 5.9E-30 180.2 8.8 117 2-120 16-133 (205) 13 1w25_A Stalked-cell differenti 99.9 6.6E-26 2.8E-30 182.3 6.8 115 2-118 4-121 (459) 14 1zgz_A Torcad operon transcrip 99.9 1.7E-25 7E-30 179.8 8.5 117 2-120 5-121 (122) 15 2a9o_A Response regulator; ess 99.9 1.1E-25 4.6E-30 180.9 7.1 117 2-120 4-120 (120) 16 2pl1_A Transcriptional regulat 99.9 1.7E-25 7.3E-30 179.7 7.9 117 2-120 3-120 (121) 17 2pln_A HP1043, response regula 99.9 2.5E-25 1.1E-29 178.6 8.3 114 2-121 21-136 (137) 18 3f6p_A Transcriptional regulat 99.9 3.5E-25 1.5E-29 177.7 8.8 116 2-119 5-120 (120) 19 1mvo_A PHOP response regulator 99.9 7.9E-25 3.3E-29 175.5 8.4 119 2-122 6-125 (136) 20 1xhf_A DYE resistance, aerobic 99.9 6.2E-25 2.6E-29 176.1 7.2 117 2-120 6-122 (123) 21 2qxy_A Response regulator; reg 99.9 7.7E-25 3.2E-29 175.6 7.3 116 2-120 7-123 (142) 22 3crn_A Response regulator rece 99.9 1.3E-24 5.3E-29 174.2 7.7 119 2-122 6-125 (132) 23 3c3w_A Two component transcrip 99.9 2.1E-25 8.6E-30 179.2 3.6 194 2-209 4-200 (225) 24 3luf_A Two-component system re 99.9 1.4E-24 5.8E-29 174.0 7.1 118 2-121 127-248 (259) 25 2jba_A Phosphate regulon trans 99.9 1.5E-24 6.3E-29 173.7 6.8 119 2-122 5-126 (127) 26 3jte_A Response regulator rece 99.9 3.2E-24 1.4E-28 171.7 7.7 119 2-120 6-125 (143) 27 3cg4_A Response regulator rece 99.9 7.2E-24 3E-28 169.5 9.4 116 2-119 10-128 (142) 28 2qr3_A Two-component system re 99.9 3.3E-24 1.4E-28 171.6 7.2 118 2-119 6-127 (140) 29 1qkk_A DCTD, C4-dicarboxylate 99.9 2.6E-24 1.1E-28 172.2 6.5 115 2-118 6-121 (155) 30 3hzh_A Chemotaxis response reg 99.9 4.7E-24 2E-28 170.6 7.4 117 2-118 39-157 (157) 31 3h5i_A Response regulator/sens 99.9 1.8E-23 7.7E-28 166.9 9.7 119 2-121 8-127 (140) 32 3gl9_A Response regulator; bet 99.9 1.1E-23 4.8E-28 168.2 8.0 114 2-117 5-121 (122) 33 3c3m_A Response regulator rece 99.9 2.4E-23 1E-27 166.2 9.2 118 2-121 6-126 (138) 34 2zay_A Response regulator rece 99.9 4.7E-24 2E-28 170.6 5.3 117 2-120 11-130 (147) 35 2ayx_A Sensor kinase protein R 99.9 1.4E-23 6.1E-28 167.6 7.5 117 2-120 132-249 (254) 36 2gkg_A Response regulator homo 99.9 2.3E-23 9.6E-28 166.3 8.3 116 2-119 8-126 (127) 37 3lte_A Response regulator; str 99.9 3.1E-23 1.3E-27 165.5 8.8 118 2-121 9-128 (132) 38 1gxq_A PHOB, phosphate regulon 99.9 1.7E-23 7.3E-28 167.1 7.1 100 122-222 5-104 (106) 39 1dbw_A Transcriptional regulat 99.9 3.4E-23 1.4E-27 165.2 8.2 115 2-118 6-121 (126) 40 3cfy_A Putative LUXO repressor 99.9 8.3E-24 3.5E-28 169.1 4.9 118 2-121 7-125 (137) 41 3nhm_A Response regulator; pro 99.9 3.7E-23 1.5E-27 165.0 8.1 119 2-124 7-128 (133) 42 2z9m_A Response regulator YYCF 99.9 2.9E-23 1.2E-27 165.6 7.4 101 122-223 10-111 (120) 43 1srr_A SPO0F, sporulation resp 99.9 4.1E-23 1.7E-27 164.7 8.0 115 2-118 6-121 (124) 44 2jzy_A Transcriptional regulat 99.9 2.3E-23 9.8E-28 166.2 6.6 99 123-222 3-101 (112) 45 3cnb_A DNA-binding response re 99.9 6.2E-23 2.6E-27 163.6 8.7 118 2-121 11-133 (143) 46 3hdv_A Response regulator; PSI 99.9 3.9E-23 1.6E-27 164.9 7.1 119 2-122 10-131 (136) 47 3eod_A Protein HNR; response r 99.9 4.8E-23 2E-27 164.3 7.4 116 2-119 10-127 (130) 48 1mb3_A Cell division response 99.9 7.6E-23 3.2E-27 163.0 8.3 117 2-120 4-123 (124) 49 3n0r_A Response regulator; sig 99.9 7.2E-23 3E-27 163.2 7.8 114 2-119 163-278 (286) 50 3a10_A Response regulator; pho 99.9 2.4E-22 1E-26 159.9 10.5 111 2-116 4-115 (116) 51 1tmy_A CHEY protein, TMY; chem 99.9 9.7E-23 4.1E-27 162.3 8.3 114 2-117 5-120 (120) 52 3cg0_A Response regulator rece 99.9 5.4E-23 2.3E-27 163.9 7.0 121 2-123 12-133 (140) 53 3dzd_A Transcriptional regulat 99.9 6.2E-23 2.6E-27 163.6 7.2 115 2-118 3-118 (368) 54 3hv2_A Response regulator/HD d 99.9 6.9E-23 2.9E-27 163.3 7.2 117 2-120 17-135 (153) 55 3hdg_A Uncharacterized protein 99.9 5.9E-23 2.5E-27 163.7 6.6 114 2-117 10-124 (137) 56 2hwv_A DNA-binding response re 99.9 6.5E-23 2.7E-27 163.4 6.8 101 121-222 16-117 (121) 57 2jk1_A HUPR, hydrogenase trans 99.9 7E-23 2.9E-27 163.2 6.7 116 2-120 4-121 (139) 58 3bre_A Probable two-component 99.9 3E-23 1.3E-27 165.5 4.0 114 2-117 21-138 (358) 59 2hqn_A Putative transcriptiona 99.9 1.2E-22 4.9E-27 161.9 6.9 100 122-222 3-102 (109) 60 2pmu_A Response regulator PHOP 99.9 1.5E-22 6.4E-27 161.1 7.5 101 120-222 6-106 (110) 61 2rjn_A Response regulator rece 99.9 2E-22 8.3E-27 160.4 8.0 115 2-118 10-126 (154) 62 3klo_A Transcriptional regulat 99.9 5.4E-23 2.3E-27 163.9 4.9 198 2-211 10-212 (225) 63 3eq2_A Probable two-component 99.9 1.8E-22 7.5E-27 160.7 7.6 113 2-116 8-122 (394) 64 1opc_A OMPR, OMPRC; transcript 99.9 1.6E-22 6.6E-27 161.0 7.1 100 122-222 5-105 (110) 65 1dc7_A NTRC, nitrogen regulati 99.9 9.4E-24 3.9E-28 168.7 0.7 118 1-120 5-123 (124) 66 1jbe_A Chemotaxis protein CHEY 99.9 3.3E-22 1.4E-26 159.0 7.8 116 2-119 7-126 (128) 67 3kto_A Response regulator rece 99.9 4.3E-23 1.8E-27 164.6 3.3 121 1-121 8-129 (136) 68 3f6c_A Positive transcription 99.9 3.5E-22 1.5E-26 158.8 7.7 120 2-123 4-125 (134) 69 1ny5_A Transcriptional regulat 99.9 4.1E-22 1.7E-26 158.4 7.8 114 2-117 3-117 (387) 70 3cu5_A Two component transcrip 99.9 3.2E-22 1.4E-26 159.1 7.2 115 2-118 5-123 (141) 71 1k66_A Phytochrome response re 99.9 4.6E-22 1.9E-26 158.1 7.9 116 2-119 9-139 (149) 72 3grc_A Sensor protein, kinase; 99.9 7.5E-22 3.2E-26 156.7 8.5 117 2-120 9-129 (140) 73 2k4j_A Putative transcriptiona 99.9 2.3E-22 9.8E-27 159.9 5.9 98 124-222 17-115 (115) 74 2b4a_A BH3024; 10175646, struc 99.9 1.2E-21 5E-26 155.5 9.1 113 2-119 18-132 (138) 75 3kht_A Response regulator; PSI 99.9 6.3E-22 2.7E-26 157.2 7.1 116 2-119 8-129 (144) 76 3kcn_A Adenylate cyclase homol 99.9 9.2E-22 3.9E-26 156.2 7.8 115 2-119 7-124 (151) 77 3h1g_A Chemotaxis protein CHEY 99.9 1E-21 4.4E-26 155.8 7.8 116 2-119 8-128 (129) 78 3m6m_D Sensory/regulatory prot 99.8 1.3E-21 5.4E-26 155.3 7.7 116 2-119 17-137 (143) 79 1dz3_A Stage 0 sporulation pro 99.8 1.6E-21 6.7E-26 154.7 8.0 118 2-121 5-126 (130) 80 1i3c_A Response regulator RCP1 99.8 1.5E-21 6.2E-26 154.9 7.5 114 2-117 11-136 (149) 81 1k68_A Phytochrome response re 99.8 1.5E-21 6.5E-26 154.8 7.6 115 2-118 5-131 (140) 82 3b2n_A Uncharacterized protein 99.8 1.1E-21 4.6E-26 155.7 6.6 116 2-119 6-124 (133) 83 3lua_A Response regulator rece 99.8 8.9E-22 3.7E-26 156.3 6.0 118 2-121 7-130 (140) 84 1p6q_A CHEY2; chemotaxis, sign 99.8 1.3E-21 5.6E-26 155.2 6.6 115 2-118 9-127 (129) 85 3cz5_A Two-component response 99.8 2.8E-21 1.2E-25 153.1 7.9 116 2-119 8-126 (153) 86 3heb_A Response regulator rece 99.8 4.1E-21 1.7E-25 152.1 8.4 114 2-117 7-134 (152) 87 2r25_B Osmosensing histidine p 99.8 4.6E-21 1.9E-25 151.8 8.1 116 2-119 5-128 (133) 88 2qsj_A DNA-binding response re 99.8 3.9E-21 1.6E-25 152.3 6.9 116 2-119 6-125 (154) 89 2qv0_A Protein MRKE; structura 99.8 5.7E-21 2.4E-25 151.2 6.9 116 2-121 12-130 (143) 90 3eul_A Possible nitrate/nitrit 99.8 7.5E-21 3.2E-25 150.4 7.4 116 2-119 18-136 (152) 91 3i42_A Response regulator rece 99.8 1.6E-20 6.8E-25 148.4 8.9 112 2-116 6-120 (127) 92 1dcf_A ETR1 protein; beta-alph 99.8 2E-20 8.3E-25 147.8 7.2 114 2-118 10-129 (136) 93 2j48_A Two-component sensor ki 99.8 5E-20 2.1E-24 145.3 8.9 111 2-117 4-117 (119) 94 3c97_A Signal transduction his 99.8 4.4E-20 1.9E-24 145.6 8.4 112 2-118 13-130 (140) 95 3eqz_A Response regulator; str 99.8 1.7E-20 7E-25 148.3 5.4 117 2-121 6-128 (135) 96 2qvg_A Two component response 99.8 6.3E-20 2.7E-24 144.6 7.6 112 2-115 10-132 (143) 97 2rdm_A Response regulator rece 99.8 2E-19 8.4E-24 141.5 9.6 117 2-121 8-126 (132) 98 3kyj_B CHEY6 protein, putative 99.8 2.4E-19 1E-23 141.0 6.2 104 2-107 16-124 (145) 99 3ilh_A Two component response 99.8 2.3E-18 9.9E-23 134.7 8.7 117 2-120 12-141 (146) 100 1qo0_D AMIR; binding protein, 99.8 3.8E-19 1.6E-23 139.7 4.4 110 2-117 15-124 (196) 101 1a2o_A CHEB methylesterase; ba 99.7 4.2E-18 1.8E-22 133.2 8.1 113 2-116 6-131 (349) 102 3cwo_X Beta/alpha-barrel prote 99.5 1.5E-15 6.3E-20 117.1 1.9 82 25-108 7-89 (237) 103 3luf_A Two-component system re 99.3 5.4E-13 2.3E-17 101.0 2.6 103 2-108 7-110 (259) 104 2ff4_A Probable regulatory pro 98.6 1.9E-08 8E-13 72.3 4.4 84 139-222 20-105 (388) 105 1w25_A Stalked-cell differenti 98.1 7.9E-06 3.3E-10 55.8 7.1 111 2-116 155-268 (459) 106 3c57_A Two component transcrip 97.4 9.7E-05 4.1E-09 49.0 4.0 61 147-217 26-86 (95) 107 2q0o_A Probable transcriptiona 97.3 0.00021 8.7E-09 46.9 4.1 53 146-208 173-225 (236) 108 1l3l_A Transcriptional activat 97.2 0.00025 1E-08 46.4 3.9 55 144-208 169-223 (234) 109 1je8_A Nitrate/nitrite respons 97.2 0.00025 1.1E-08 46.4 3.9 54 147-210 20-73 (82) 110 1fse_A GERE; helix-turn-helix 97.0 7.5E-05 3.2E-09 49.7 0.0 56 147-212 10-65 (74) 111 1x3u_A Transcriptional regulat 97.0 6.1E-05 2.6E-09 50.2 -0.5 55 148-212 16-70 (79) 112 2vyc_A Biodegradative arginine 97.0 0.00044 1.9E-08 44.8 3.6 117 2-118 3-133 (755) 113 2krf_A Transcriptional regulat 97.0 0.00012 5E-09 48.4 0.7 59 145-213 9-67 (73) 114 3clo_A Transcriptional regulat 96.9 0.00013 5.3E-09 48.2 0.1 55 147-211 196-250 (258) 115 1p4w_A RCSB; solution structur 96.9 0.0001 4.3E-09 48.9 -0.4 56 147-212 33-88 (99) 116 2rnj_A Response regulator prot 96.8 0.00014 6E-09 47.9 -0.3 53 148-210 29-81 (91) 117 1bia_A BIRA bifunctional prote 96.5 0.0043 1.8E-07 38.6 5.4 19 160-178 225-243 (321) 118 2jpc_A SSRB; DNA binding prote 96.2 0.00072 3E-08 43.5 0.2 57 152-218 2-58 (61) 119 2yxb_A Coenzyme B12-dependent 94.7 0.048 2E-06 32.0 5.3 110 6-116 29-143 (161) 120 3k69_A Putative transcription 93.6 0.12 5E-06 29.5 5.5 53 156-221 17-71 (162) 121 2i2x_B MTAC, methyltransferase 92.6 0.5 2.1E-05 25.6 7.5 101 6-109 134-238 (258) 122 1ylf_A RRF2 family protein; st 92.1 0.17 7E-06 28.6 4.5 18 159-176 22-39 (149) 123 1xm3_A Thiazole biosynthesis p 90.3 0.2 8.4E-06 28.1 3.4 85 16-102 119-208 (264) 124 1y80_A Predicted cobalamin bin 90.3 0.35 1.5E-05 26.6 4.6 88 11-101 104-197 (210) 125 3lwf_A LIN1550 protein, putati 89.9 0.56 2.3E-05 25.3 5.4 63 147-222 20-88 (159) 126 2g9w_A Conserved hypothetical 89.5 0.34 1.4E-05 26.6 4.1 53 145-200 3-55 (138) 127 1ccw_A Protein (glutamate muta 89.2 0.65 2.8E-05 24.9 5.3 108 6-114 14-132 (137) 128 2k4b_A Transcriptional regulat 88.8 0.28 1.2E-05 27.2 3.2 54 143-200 27-80 (99) 129 1wv2_A Thiazole moeity, thiazo 88.6 0.7 2.9E-05 24.7 5.2 84 16-101 128-216 (265) 130 2d1h_A ST1889, 109AA long hypo 87.8 0.32 1.4E-05 26.8 3.1 46 147-199 17-62 (109) 131 1okr_A MECI, methicillin resis 87.7 0.27 1.1E-05 27.3 2.6 55 143-201 2-56 (123) 132 1sd4_A Penicillinase repressor 86.7 0.46 1.9E-05 25.9 3.3 53 144-200 3-55 (126) 133 3fkq_A NTRC-like two-domain pr 85.7 1.9 7.8E-05 22.0 7.8 99 2-115 24-125 (373) 134 1id1_A Putative potassium chan 85.4 1.3 5.3E-05 23.1 5.0 93 2-99 29-123 (153) 135 3ezx_A MMCP 1, monomethylamine 85.0 1 4.3E-05 23.7 4.4 96 6-104 103-206 (215) 136 1p6r_A Penicillinase repressor 84.9 0.46 1.9E-05 25.8 2.6 51 147-201 5-55 (82) 137 2frh_A SARA, staphylococcal ac 84.5 0.49 2.1E-05 25.7 2.6 50 145-200 31-80 (127) 138 1p4x_A Staphylococcal accessor 82.0 0.94 4E-05 23.9 3.2 50 145-200 152-201 (250) 139 2z99_A Putative uncharacterize 81.6 2.1 8.8E-05 21.7 4.9 34 143-179 92-125 (219) 140 2o8x_A Probable RNA polymerase 81.5 1.1 4.6E-05 23.5 3.4 51 147-206 14-64 (70) 141 1xsv_A Hypothetical UPF0122 pr 80.0 1.2 4.9E-05 23.3 3.1 46 149-203 26-71 (113) 142 3bro_A Transcriptional regulat 80.0 1.3 5.6E-05 22.9 3.4 50 146-205 29-78 (141) 143 1jhf_A LEXA repressor; LEXA SO 79.5 1 4.3E-05 23.6 2.7 40 126-166 125-164 (202) 144 3l9w_A Glutathione-regulated p 79.5 1.7 7.2E-05 22.2 3.8 91 2-101 30-122 (413) 145 1qv9_A F420-dependent methylen 78.8 3.4 0.00014 20.4 5.2 81 22-105 31-123 (283) 146 1t6s_A Conserved hypothetical 78.1 2.8 0.00012 20.8 4.6 34 144-180 87-120 (162) 147 3fwz_A Inner membrane protein 76.8 3.9 0.00016 20.0 5.5 90 2-100 33-124 (140) 148 3k2z_A LEXA repressor; winged 76.7 1.4 5.8E-05 22.8 2.7 16 10-25 9-24 (196) 149 1req_A Methylmalonyl-COA mutas 75.4 4.2 0.00018 19.8 6.9 13 92-104 356-368 (727) 150 1s7o_A Hypothetical UPF0122 pr 75.1 1.8 7.4E-05 22.1 2.9 46 149-203 23-68 (113) 151 1ka9_F Imidazole glycerol phos 74.9 4.3 0.00018 19.7 5.6 69 34-102 36-105 (252) 152 3bw2_A 2-nitropropane dioxygen 74.2 4.5 0.00019 19.6 8.0 85 15-100 137-236 (369) 153 3hug_A RNA polymerase sigma fa 73.9 2.4 1E-04 21.3 3.3 47 148-203 37-83 (92) 154 1wl8_A GMP synthase [glutamine 73.2 4.8 0.0002 19.4 6.4 77 1-79 2-79 (189) 155 3mzy_A RNA polymerase sigma-H 72.8 2.5 0.00011 21.2 3.2 45 150-204 111-155 (164) 156 1qdl_B Protein (anthranilate s 72.7 4.1 0.00017 19.8 4.3 77 1-79 3-84 (195) 157 3eco_A MEPR; mutlidrug efflux 71.9 3.2 0.00013 20.5 3.6 47 147-203 27-73 (139) 158 1y0e_A Putative N-acetylmannos 70.6 1.4 6E-05 22.7 1.5 13 165-177 182-194 (223) 159 2wte_A CSA3; antiviral protein 70.5 3 0.00012 20.7 3.1 58 148-220 149-207 (244) 160 3c85_A Putative glutathione-re 70.0 5.6 0.00024 19.0 4.9 35 60-96 119-154 (183) 161 2o3f_A Putative HTH-type trans 69.3 1.6 6.6E-05 22.5 1.5 51 145-205 15-67 (111) 162 2w6r_A Imidazole glycerol phos 69.1 5.9 0.00025 18.9 5.3 86 23-108 24-116 (266) 163 1or7_A Sigma-24, RNA polymeras 69.0 3.2 0.00013 20.5 3.0 48 148-204 140-187 (194) 164 3k0l_A Repressor protein; heli 67.9 5 0.00021 19.3 3.8 45 147-199 42-86 (162) 165 1lj9_A Transcriptional regulat 66.8 5.2 0.00022 19.2 3.8 45 146-198 24-68 (144) 166 3ech_A MEXR, multidrug resista 66.4 5.2 0.00022 19.2 3.7 46 146-199 32-77 (142) 167 3bpv_A Transcriptional regulat 66.3 4.9 0.00021 19.3 3.6 46 145-198 23-68 (138) 168 3bja_A Transcriptional regulat 66.0 5.4 0.00023 19.1 3.7 46 146-199 28-73 (139) 169 3llv_A Exopolyphosphatase-rela 66.0 6.8 0.00029 18.5 6.5 88 2-97 32-119 (141) 170 1sfx_A Conserved hypothetical 65.9 3.8 0.00016 20.1 2.9 49 145-205 14-62 (109) 171 3jw4_A Transcriptional regulat 64.9 3.6 0.00015 20.2 2.7 47 147-199 37-83 (148) 172 3oop_A LIN2960 protein; protei 64.2 4.8 0.0002 19.4 3.2 46 146-199 32-77 (143) 173 1mzb_A Ferric uptake regulatio 64.2 3.9 0.00016 20.0 2.7 58 143-205 10-67 (136) 174 2fbh_A Transcriptional regulat 64.2 7.1 0.0003 18.3 4.0 28 149-177 35-62 (146) 175 2pex_A Transcriptional regulat 62.5 5.9 0.00025 18.9 3.4 30 146-177 42-71 (153) 176 3boq_A Transcriptional regulat 62.1 6.5 0.00027 18.6 3.5 29 148-177 44-72 (160) 177 3kfw_X Uncharacterized protein 62.0 8.1 0.00034 18.0 5.3 22 194-215 219-241 (247) 178 3deu_A Transcriptional regulat 61.9 6.4 0.00027 18.6 3.5 45 147-198 49-93 (166) 179 3nqo_A MARR-family transcripti 61.8 5.8 0.00024 18.9 3.2 17 146-162 100-116 (189) 180 1i1q_B Anthranilate synthase c 61.4 8.2 0.00035 17.9 6.3 73 2-79 3-83 (192) 181 1jgs_A Multiple antibiotic res 60.6 6.7 0.00028 18.5 3.4 44 147-198 30-73 (138) 182 2p7v_B Sigma-70, RNA polymeras 60.4 8.5 0.00036 17.8 3.9 53 148-206 5-58 (68) 183 1qop_A Tryptophan synthase alp 60.0 8.7 0.00037 17.8 5.3 80 29-108 27-136 (268) 184 2vn2_A DNAD, chromosome replic 59.7 6.7 0.00028 18.5 3.3 52 143-200 24-78 (128) 185 3nrv_A Putative transcriptiona 59.3 8.4 0.00035 17.9 3.7 43 147-197 36-78 (148) 186 1ep3_A Dihydroorotate dehydrog 59.0 1.7 7.1E-05 22.3 0.1 60 41-100 121-195 (311) 187 3iwf_A Transcription regulator 58.9 3 0.00013 20.7 1.4 48 147-204 13-62 (107) 188 3bdd_A Regulatory protein MARR 58.6 6.8 0.00029 18.4 3.2 45 147-199 27-71 (142) 189 2p5v_A Transcriptional regulat 58.2 8 0.00033 18.0 3.4 11 62-72 87-97 (162) 190 2w57_A Ferric uptake regulatio 58.2 4.7 0.0002 19.5 2.2 57 144-205 10-66 (150) 191 2qww_A Transcriptional regulat 58.0 7.1 0.0003 18.3 3.2 27 149-177 39-65 (154) 192 1geq_A Tryptophan synthase alp 57.9 9.5 0.0004 17.6 6.0 48 59-106 67-120 (248) 193 2cg4_A Regulatory protein ASNC 57.4 8.7 0.00037 17.8 3.5 13 62-74 12-24 (152) 194 3cdh_A Transcriptional regulat 57.3 8.1 0.00034 18.0 3.3 27 149-177 41-67 (155) 195 1ujp_A Tryptophan synthase alp 55.3 3.1 0.00013 20.6 0.9 62 45-106 42-131 (271) 196 2aef_A Calcium-gated potassium 55.2 10 0.00044 17.3 3.9 89 2-99 33-123 (234) 197 1i1g_A Transcriptional regulat 54.8 11 0.00045 17.2 3.6 15 61-75 7-21 (141) 198 1thf_D HISF protein; thermophI 54.8 11 0.00045 17.2 5.9 69 34-102 35-104 (253) 199 3kts_A Glycerol uptake operon 54.7 8.6 0.00036 17.8 3.1 70 28-109 15-87 (192) 200 3cjn_A Transcriptional regulat 54.1 9.1 0.00038 17.7 3.2 44 148-199 49-92 (162) 201 2fbk_A Transcriptional regulat 54.1 8.3 0.00035 17.9 3.0 18 145-162 128-145 (181) 202 2rdp_A Putative transcriptiona 54.0 10 0.00042 17.4 3.4 47 146-204 37-83 (150) 203 1a53_A IGPS, indole-3-glycerol 53.2 11 0.00047 17.1 6.9 59 42-101 74-132 (247) 204 1r8j_A KAIA; circadian clock p 52.7 11 0.00048 17.0 7.4 74 6-81 16-90 (289) 205 2xij_A Methylmalonyl-COA mutas 51.8 12 0.0005 16.9 7.3 90 10-100 619-713 (762) 206 2fa5_A Transcriptional regulat 51.7 11 0.00046 17.2 3.3 45 147-203 45-89 (162) 207 1ub9_A Hypothetical protein PH 51.4 7.6 0.00032 18.1 2.4 42 150-199 15-56 (100) 208 2bv6_A MGRA, HTH-type transcri 51.3 11 0.00045 17.2 3.2 44 147-198 33-76 (142) 209 2fu4_A Ferric uptake regulatio 50.9 11 0.00048 17.0 3.3 58 143-205 9-66 (83) 210 2hr3_A Probable transcriptiona 50.3 10 0.00043 17.4 2.9 29 148-177 32-60 (147) 211 2fxa_A Protease production reg 50.1 12 0.00052 16.8 3.3 18 146-163 105-122 (207) 212 2cyy_A Putative HTH-type trans 50.1 13 0.00053 16.8 3.6 21 55-76 5-25 (151) 213 2a61_A Transcriptional regulat 49.3 12 0.0005 16.9 3.1 44 147-198 29-72 (145) 214 2v5j_A 2,4-dihydroxyhept-2-ENE 49.3 13 0.00055 16.7 4.7 94 13-109 28-126 (287) 215 1z91_A Organic hydroperoxide r 49.1 9.9 0.00042 17.4 2.7 28 148-177 37-64 (147) 216 2q1z_A RPOE, ECF SIGE; ECF sig 48.6 2.5 0.0001 21.2 -0.4 47 148-203 135-181 (184) 217 3g3z_A NMB1585, transcriptiona 48.4 13 0.00053 16.8 3.2 28 148-177 28-55 (145) 218 3igs_A N-acetylmannosamine-6-p 47.9 14 0.00057 16.6 6.1 18 61-78 58-75 (232) 219 2htm_A Thiazole biosynthesis p 47.6 11 0.00048 17.0 2.8 84 16-101 117-207 (268) 220 3bj6_A Transcriptional regulat 47.5 13 0.00056 16.6 3.2 27 149-177 38-64 (152) 221 3nav_A Tryptophan synthase alp 47.5 14 0.00058 16.5 5.3 79 29-107 30-138 (271) 222 2fbi_A Probable transcriptiona 47.4 12 0.00049 17.0 2.9 44 148-199 33-76 (142) 223 2dbb_A Putative HTH-type trans 47.4 14 0.00058 16.5 3.4 18 61-78 12-29 (151) 224 2v79_A DNA replication protein 47.3 9.7 0.00041 17.5 2.4 50 145-200 26-78 (135) 225 2e1c_A Putative HTH-type trans 46.9 14 0.00059 16.5 3.3 18 61-78 30-47 (171) 226 2eth_A Transcriptional regulat 46.7 13 0.00056 16.6 3.1 28 148-177 41-68 (154) 227 2nyx_A Probable transcriptiona 45.7 14 0.00058 16.5 3.0 17 146-162 102-118 (168) 228 3b73_A PHIH1 repressor-like pr 45.2 12 0.0005 16.9 2.6 44 149-198 11-54 (111) 229 2nnn_A Probable transcriptiona 43.9 16 0.00066 16.2 3.1 46 148-205 35-80 (140) 230 3hsr_A HTH-type transcriptiona 43.7 16 0.00066 16.2 3.0 29 147-177 32-60 (140) 231 1vzw_A Phosphoribosyl isomeras 43.3 16 0.00067 16.1 3.2 70 33-102 36-105 (244) 232 2z6i_A Trans-2-enoyl-ACP reduc 42.5 16 0.00069 16.0 6.8 85 15-100 102-190 (332) 233 3khj_A Inosine-5-monophosphate 42.1 17 0.0007 16.0 8.2 58 39-98 113-170 (361) 234 2gjl_A Hypothetical protein PA 42.0 17 0.00071 16.0 8.3 85 15-100 110-200 (328) 235 3lmm_A Uncharacterized protein 41.3 17 0.00073 15.9 3.2 48 145-200 424-471 (583) 236 1yxy_A Putative N-acetylmannos 41.0 6.4 0.00027 18.6 0.7 17 62-78 59-75 (234) 237 2fe3_A Peroxide operon regulat 40.4 16 0.00069 16.0 2.7 57 144-206 15-71 (145) 238 1s3j_A YUSO protein; structura 40.1 16 0.00067 16.1 2.6 16 146-161 94-109 (155) 239 1tlh_B Sigma-70, RNA polymeras 39.7 18 0.00077 15.8 3.0 53 148-206 18-71 (81) 240 1dxe_A 2-dehydro-3-deoxy-galac 38.8 19 0.00079 15.7 5.7 187 14-205 9-210 (256) 241 3etn_A Putative phosphosugar i 37.4 20 0.00083 15.5 4.6 70 11-81 73-144 (220) 242 2x4h_A Hypothetical protein SS 36.6 20 0.00086 15.5 3.5 43 154-203 85-127 (139) 243 1jvn_A Glutamine, bifunctional 36.4 21 0.00086 15.4 4.5 45 1-49 6-50 (555) 244 1h5y_A HISF; histidine biosynt 36.4 21 0.00086 15.4 5.1 70 33-102 37-107 (253) 245 1ku3_A Sigma factor SIGA; heli 36.4 21 0.00086 15.4 3.6 51 148-204 10-61 (73) 246 1yad_A Regulatory protein TENI 36.1 12 0.0005 16.9 1.5 28 75-103 112-139 (221) 247 1rp3_A RNA polymerase sigma fa 36.1 21 0.00087 15.4 3.3 46 148-202 187-232 (239) 248 3fm5_A Transcriptional regulat 35.8 21 0.00088 15.4 2.8 28 149-177 37-64 (150) 249 2hmt_A YUAA protein; RCK, KTN, 35.6 21 0.00089 15.4 3.0 21 3-27 33-53 (144) 250 2o03_A Probable zinc uptake re 35.2 19 0.0008 15.6 2.4 56 145-206 5-60 (131) 251 3i4p_A Transcriptional regulat 35.0 22 0.00091 15.3 3.6 10 63-72 8-17 (162) 252 1rd5_A Tryptophan synthase alp 34.5 22 0.00093 15.2 5.0 69 38-106 38-130 (262) 253 3e6m_A MARR family transcripti 33.8 22 0.00091 15.3 2.5 46 147-200 49-94 (161) 254 3cuo_A Uncharacterized HTH-typ 33.8 23 0.00095 15.2 3.2 41 151-199 24-64 (99) 255 1stz_A Heat-inducible transcri 32.1 24 0.001 15.0 2.5 19 9-28 53-71 (338) 256 2xed_A Putative maleate isomer 31.9 24 0.001 15.0 5.5 12 39-50 86-97 (273) 257 1i4n_A Indole-3-glycerol phosp 31.6 25 0.001 14.9 8.2 56 44-100 74-129 (251) 258 3cni_A Putative ABC type-2 tra 31.3 25 0.001 14.9 6.3 69 2-79 13-82 (156) 259 3eyy_A Putative iron uptake re 30.0 25 0.0011 14.9 2.3 55 144-205 12-66 (145) 260 1rzu_A Glycogen synthase 1; gl 29.9 26 0.0011 14.8 5.6 21 10-30 21-41 (485) 261 1jub_A Dihydroorotate dehydrog 29.9 13 0.00055 16.7 0.8 14 165-178 249-262 (311) 262 2w25_A Probable transcriptiona 29.0 27 0.0011 14.7 3.3 13 63-75 12-24 (150) 263 2r6o_A Putative diguanylate cy 27.7 22 0.00091 15.3 1.6 15 185-199 264-278 (294) 264 1vrd_A Inosine-5'-monophosphat 27.3 21 0.0009 15.3 1.6 60 38-99 244-304 (494) 265 3neu_A LIN1836 protein; struct 27.0 29 0.0012 14.4 4.9 45 164-221 33-78 (125) 266 3by6_A Predicted transcription 26.6 30 0.0013 14.4 4.4 12 209-220 64-75 (126) 267 2qzs_A Glycogen synthase; glyc 26.5 30 0.0013 14.4 5.3 21 10-30 21-41 (485) 268 1tty_A Sigma-A, RNA polymerase 26.1 31 0.0013 14.3 4.0 52 148-205 18-70 (87) 269 1y0u_A Arsenical resistance op 25.1 32 0.0013 14.2 4.7 52 152-221 32-83 (96) 270 3i65_A Dihydroorotate dehydrog 24.7 19 0.00079 15.7 0.9 13 165-177 352-364 (415) 271 2vws_A YFAU, 2-keto-3-deoxy su 24.2 33 0.0014 14.1 7.3 96 13-109 7-105 (267) 272 3dqq_A Putative tRNA synthase; 24.0 34 0.0014 14.1 4.9 56 2-60 5-61 (421) 273 1dl5_A Protein-L-isoaspartate 23.9 32 0.0014 14.2 2.0 64 4-71 105-169 (317) 274 3p0w_A Mandelate racemase/muco 23.7 14 0.00057 16.6 -0.0 43 60-102 287-329 (470) 275 3gz3_A Dihydroorotate dehydrog 23.6 20 0.00083 15.5 0.8 14 165-178 284-297 (354) 276 2e6f_A Dihydroorotate dehydrog 23.5 19 0.00079 15.7 0.7 16 163-178 249-264 (314) 277 1uf3_A Hypothetical protein TT 23.4 34 0.0014 14.0 4.0 50 35-84 24-75 (228) 278 3dn7_A Cyclic nucleotide bindi 23.3 12 0.00051 16.9 -0.3 43 149-202 149-193 (194) 279 1ec7_A Glucarate dehydratase; 23.2 14 0.0006 16.4 0.0 45 59-103 270-314 (446) 280 3fxa_A SIS domain protein; YP_ 22.8 35 0.0015 14.0 3.5 20 12-31 60-79 (201) 281 3ffs_A Inosine-5-monophosphate 22.1 36 0.0015 13.9 8.6 58 39-98 152-209 (400) 282 3oix_A Putative dihydroorotate 22.0 23 0.00095 15.2 0.8 15 164-178 281-295 (345) 283 1jcn_A Inosine monophosphate d 22.0 35 0.0015 14.0 1.8 58 39-98 263-321 (514) 284 1zfj_A Inosine monophosphate d 21.9 27 0.0011 14.7 1.2 57 41-99 243-300 (491) 285 1vhc_A Putative KHG/KDPG aldol 21.8 37 0.0016 13.8 3.1 94 13-110 8-104 (224) 286 2c6q_A GMP reductase 2; TIM ba 21.5 26 0.0011 14.8 1.0 56 43-100 132-188 (351) 287 1eep_A Inosine 5'-monophosphat 21.3 32 0.0013 14.2 1.5 60 38-99 160-220 (404) 288 1d3g_A Dihydroorotate dehydrog 21.0 21 0.0009 15.3 0.6 13 165-177 305-317 (367) 289 3kp7_A Transcriptional regulat 20.9 39 0.0016 13.7 3.8 14 147-160 97-110 (151) 290 1vcf_A Isopentenyl-diphosphate 20.5 39 0.0017 13.7 1.9 16 84-99 195-210 (332) 291 2zru_A Isopentenyl-diphosphate 20.1 27 0.0011 14.7 0.9 42 60-101 175-218 (368) 292 1xi3_A Thiamine phosphate pyro 20.0 40 0.0017 13.6 7.4 28 75-103 110-137 (215) No 1 >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV} Probab=100.00 E-value=0 Score=357.89 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=201.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+ |+++|+++++.++..+++||||+|++ T Consensus 7 ILlVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilDi~l--p~~~g~~~~~~~~~~~~~pii~lt~~ 84 (230) T 2oqr_A 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTDVCKQLRARSSVPVIMVTAR 84 (230) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHHCSCSEEEEECC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCEEEEEEECC T ss_conf 9999699999999999999879999998999999999974899899994899--99888742023224564079998244 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 21000011122201000102333332100000111222222-----2112222222222222222222332124210123 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l 156 (223) ++.++++++|++||||||+|||+++||++|+++++||.... ...+..|++.+|...++++++|+.+.||++||+| T Consensus 85 ~~~~~~~~~l~~Gaddyl~KP~~~~eL~ari~~~~rr~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~g~~i~LT~~E~~l 164 (230) T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDL 164 (230) T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHH T ss_conf 67688888887699889969999999999999998431455555667759989999822458999899897179999999 Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEEC Q ss_conf 4432112883400899998652876577766136889999998601456-7771577868630313 Q gi|254780526|r 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 (223) Q Consensus 157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~ 221 (223) |.+|++|+|++|||++|.+++||. +...++|||++||+||||||+..+ ....|+||||.||+|+ T Consensus 165 L~~L~~~~~~vvsr~~l~~~vwg~-~~~~~~~tv~~~I~rLRkKL~~~~~~~~~I~Tvrg~GY~l~ 229 (230) T 2oqr_A 165 LEYLMRNSGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229 (230) T ss_dssp HHHHHHTTTSCEEHHHHHHHHTSS-CCTTHHHHHHHHHHHHHHHHCSSSSSCSSEEEETTTEEEEC T ss_pred HHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEE T ss_conf 999981899862699999986397-76888677999999999974217899975998737218980 No 2 >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Probab=100.00 E-value=0 Score=353.96 Aligned_cols=218 Identities=20% Similarity=0.286 Sum_probs=202.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.+ |+++|+++++.+|+.++.|+|++|+. T Consensus 8 ILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilD~~l--p~~~g~~~~~~~r~~~~~~iIilt~~ 85 (238) T 2gwr_A 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGIDVCRVLRADSGVPIVMLTAK 85 (238) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHTTCCCCEEEEEET T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEECCCCCCCCCCCCCCCC T ss_conf 9999399999999999999779999998999999999983799999991677--66688712311223566531101258 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 2100001112220100010233333210000011122222-221122222222222222222223321242101234432 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223) ++.++++++|++||||||+|||+++||.+|+++++||... ....+.+|++.+|+.+++++++|+.+.||++||+||.+| T Consensus 86 ~~~~~~~~al~~Gaddyl~KP~~~~eL~ari~a~lrr~~~~~~~~~~~~~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L 165 (238) T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVAL 165 (238) T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCEEECCHHEEEEECCEEEECCHHHHHHHHHH T ss_conf 99999999997799880218999999999999996324578763784188587310309988998985689999999999 Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC Q ss_conf 112883400899998652876577766136889999998601456-77715778686303138 Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 (223) Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~ 222 (223) ++|+|++|||++|.+.+||. +...++|||++||+|||+||+..+ .+.+|+||||+||+|+. T Consensus 166 ~~~~g~vvsr~~l~~~vwg~-~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~Tvrg~GYrl~~ 227 (238) T 2gwr_A 166 ARKPRQVFTRDVLLEQVWGY-RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGP 227 (238) T ss_dssp HHSTTCCBCHHHHHHHHTCC-C--CCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECC T ss_pred HHCCCCEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECC T ss_conf 76799708599999874477-668874769999999999753178999869987688477878 No 3 >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Probab=100.00 E-value=0 Score=347.61 Aligned_cols=218 Identities=24% Similarity=0.318 Sum_probs=200.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+ |+++|+++++.+|+. +.+|||++|+ T Consensus 10 ILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dlvilD~~l--p~~~g~~~~~~~r~~~~~~~iiilt~ 87 (233) T 1ys7_A 10 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINM--PVLDGVSVVTALRAMDNDVPVCVLSA 87 (233) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSC--SSSCHHHHHHHHHHTTCCCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEECCCCCCCCCEECCCC T ss_conf 9999799999999999999789999998999999999974799789752238--75568622310123577762331456 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 32100001112220100010233333210000011122222----22112222222222222222222332124210123 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~----~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l 156 (223) +++.+++++||++||||||+|||+++||.||+++++++... .+.....|++.+|...++++++|+.+.||++||.+ T Consensus 88 ~~~~~~~v~al~~GAddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~g~~i~LT~~E~~l 167 (233) T 1ys7_A 88 RSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDL 167 (233) T ss_dssp CCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCHHHHH T ss_conf 68899999999779929997899879999999999986402454443222358754565442999999999647047899 Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC Q ss_conf 443211288340089999865287657776613688999999860145677715778686303138 Q gi|254780526|r 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223) |.+|++|+|+++||++|.+.+||. +..+++|||++||+|||+||+..+++.+|+||||.||+|+. T Consensus 168 L~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~rtvd~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 232 (233) T 1ys7_A 168 LAVLAEHKTAVLSRAQLLELVWGY-DFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRM 232 (233) T ss_dssp HHHHHHTTTCCBCHHHHHHHHHCC-CCC-CCCHHHHHHHHHHHHHHCC--CCCEEEETTTEEEECC T ss_pred HHHHHHCCCEEEEHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEE T ss_conf 999985378888199999998486-77888476999999999971778999809996272189986 No 4 >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=100.00 E-value=0 Score=342.96 Aligned_cols=218 Identities=21% Similarity=0.334 Sum_probs=201.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..|.+++++..+.....||++++|+.+ |+++|+++++.+|+. +.+|||++|+ T Consensus 5 ILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~l--p~~~g~~~~~~ir~~~~~~pii~ls~ 82 (225) T 1kgs_A 5 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWEILKSMRESGVNTPVLMLTA 82 (225) T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHTTCCCCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCHHHHHHCCCCCCCEEECCC T ss_conf 9999299999999999999879999998999999999972899899994677--65431010122111345675320233 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 32100001112220100010233333210000011122222-22112222222222222222222332124210123443 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223) .++.++.++++++||||||.|||+++||.+|+++.+++... .......|++.++...++++.+|+.+.||++||+||++ T Consensus 83 ~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~ 162 (225) T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEY 162 (225) T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHHHHHHHH T ss_conf 44167899999779985245899999999999999711334677533047644566550311289786265799999999 Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC Q ss_conf 211288340089999865287657776613688999999860145677715778686303138 Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223) |++|+|+++||++|++++||. +...++|||++||+|||+||+..+....|+||||+||+|+. T Consensus 163 L~~~~~~vvsr~~L~~~vwg~-~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~GY~l~~ 224 (225) T 1kgs_A 163 LVMNKNRVVTKEELQEHLWSF-DDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD 224 (225) T ss_dssp HHHTTTSCEEHHHHHHHCC------CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEECC T ss_pred HHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEE T ss_conf 875243444299999987177-77876576999999999984577999948991360089823 No 5 >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Probab=100.00 E-value=0 Score=334.15 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=193.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.+++++..+.....||+++ ||+++|+++|+.+|+. +.+|||++|+ T Consensus 3 ILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~Dlvi------lp~~~G~~l~~~ir~~~~~~pIi~lt~ 76 (223) T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDKNALSFVSRIKEKHSSIVVLVSSD 76 (223) T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCTTHHHHHHHHHHHCTTSEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE------ECCCCHHHHHHHHHHCCCCCEEEEECC T ss_conf 99993899999999999998799999989999999998458999999------589889999999876489832998236 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 3210000111222010001023333-321000001112222222112222222222222222222332124210123443 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~-~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223) +++.++++++|++|||||+.|||++ ++|.+++++++|+.. ...+..+++.++...++++.+|+.+.||++||++|++ T Consensus 77 ~~~~~~~~~~l~~Gaddyl~KP~~~~~~l~~~~~~~~r~~~--~~~~~~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~ 154 (223) T 2hqr_A 77 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG--SNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223) T ss_dssp SCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCC--CCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH T ss_pred CCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHH T ss_conf 67589999987539970787242202568999999972045--6621136533555306999899996058606788999 Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC Q ss_conf 211288340089999865287657776613688999999860145677715778686303138 Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223) |++|+|++|||++|.+.|||. +..+++|||++||+||||||+...+...|+||||.||+|.. T Consensus 155 L~~~~g~vvsr~~L~~~vw~~-~~~~~~~tld~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 216 (223) T 2hqr_A 155 LARHRDQIVSKEQLLDAIWEE-PEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCY 216 (223) T ss_dssp HHHTCSEEEEHHHHHHHHCCS-SCSCGGGTHHHHHHHHHHHHHTTSSSCCEEECSSSEEEECC T ss_pred HHHCCCEEEEHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECEEEEECC T ss_conf 987899278299998884188-77888677999999999985276999809998170368787 No 6 >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=100.00 E-value=0 Score=325.34 Aligned_cols=211 Identities=22% Similarity=0.316 Sum_probs=189.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.++..|+..|+ |.++.+++++ +...+.||++++|+.+ |+++|+++++.+++ .+++|||++|+ T Consensus 5 ILiVdDd~~~~~~l~~~L~~~g~-v~~~~~~~ea--l~~~~~~DlvilD~~l--p~~~g~~~~~~~~~~~~~~~iiilt~ 79 (220) T 1p2f_A 5 IAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDF--LNDEEAFHVVVLDVML--PDYSGYEICRMIKETRPETWVILLTL 79 (220) T ss_dssp EEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHH--HHCCSCCSEEEEESBC--SSSBHHHHHHHHHHHCTTSEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCE-EEEECCHHHH--HHHCCCCCEEEEECCC--CCCCCCHHHHHHHHCCCCEEEEECCC T ss_conf 99995989999999999986999-9998799999--9527899999997999--98886023332110244203430122 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 32100001112220100010233333210000011122222221122222222222222222223321242101234432 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223) ..+.+++++++++|||||+.|||+++||.+||++++||.+ ....+.|++.+|...++++++|+.+.||++||+||++| T Consensus 80 ~~~~~~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~r~~--~~~~~~~~~~ld~~~~~~~~~g~~v~LT~~E~~iL~~L 157 (220) T 1p2f_A 80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK--KGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFL 157 (220) T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC--CSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHH T ss_pred CCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCC--CCCEECCCEEECCCCCEEEECCEEECCCHHHHHHHHHH T ss_conf 3230036754414652224357320018999999983054--68354188378047629999998962899999999999 Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCEEEECCCCEEECC Q ss_conf 112883400899998652876577766136889999998601456-77715778686303138 Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 (223) Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~-~~~~I~tvrg~GY~l~~ 222 (223) ++|+|++|||++|.+.+||. ..++|||++||+||||||+..+ ...+|+||||.||+|+. T Consensus 158 ~~~~g~vvsr~~l~~~vw~~---~~~~~tv~~~I~rLRkKL~~~~~~~~~I~tvrg~GY~~~~ 217 (220) T 1p2f_A 158 AENAGKVVTREKLLETFWED---PVSPRVVDTVIKRIRKAIEDDPNRPRYIKTIWGVGYMFTG 217 (220) T ss_dssp HHTTTSCEEHHHHHHHHCSS---CCCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECC T ss_pred HHCCCCEECHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECC T ss_conf 84899678199998786078---8886679999999999730078999839997687869738 No 7 >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Probab=99.96 E-value=5.4e-31 Score=214.33 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=153.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++++...|+..||.|..+.+++++.......+||++++|+. ||+++|+++++.+|+. +++|||++|+ T Consensus 7 ILIVDD~~~~r~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~pDlvllD~~--mp~~~G~~~l~~i~~~~~~~~iI~lt~ 84 (208) T 1yio_A 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIVFITA 84 (208) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 999949999999999999977998999799999999860469998998578--899765799999886056651798725 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 32100001112220100010233333210000011122222221122222222222222222223321242101234432 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L 160 (223) +++.+...+++++||+||+.||++.+||.++|++.+++......... ...........||++|.+++.++ T Consensus 85 ~~~~~~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~~~~~~~~----------~~~~~~~~~~~Lt~re~evl~ll 154 (208) T 1yio_A 85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARE----------TQDQLEQLFSSLTGREQQVLQLT 154 (208) T ss_dssp CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCCCCCCHHHHHHHHHH T ss_conf 79999999999779998953899999999999999974013445555----------33210011232246899999999 Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 11288340089999865287657776613688999999860145677715778 Q gi|254780526|r 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 (223) Q Consensus 161 ~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tv 213 (223) ++ | .|..+|++.+ ..+.+||++|+++|++||+.....+.++.+ T Consensus 155 ~~--g--~~~~eIa~~l------~iS~~TV~~h~~~i~~KL~~~~~~elv~~~ 197 (208) T 1yio_A 155 IR--G--LMNKQIAGEL------GIAEVTVKVHRHNIMQKLNVRSLANLVHLV 197 (208) T ss_dssp TT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCSSHHHHHHHH T ss_pred HC--C--CCHHHHHHHC------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 81--5--6499999972------876899999999999980999999999999 No 8 >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Probab=99.96 E-value=8.5e-30 Score=206.78 Aligned_cols=192 Identities=18% Similarity=0.199 Sum_probs=156.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECC Q ss_conf 68970989999999999997898--8999828589999998289967999900789662179998631013-32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~l 78 (223) |||||||+.+++++..+|+..+. .|..+.+++++..+.....||++++|+.+ |+++|+++++.+++. +.+||+++ T Consensus 8 ILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~~~pdlvllD~~l--p~~~G~~~~~~~~~~~~~~~iivl 85 (215) T 1a04_A 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM--PGMNGLETLDKLREKSLSGRIVVF 85 (215) T ss_dssp EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTS--TTSCHHHHHHHHHHSCCCSEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999929899999999999858992899997999999999974699689996888--998986232101124566554344 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223) |+.++.++.++++++||+||+.||++..++.++++++.++....+... ...+..+.........+....||+||+++|. T Consensus 86 t~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LT~rE~~vl~ 164 (215) T 1a04_A 86 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEAL-TPVLAASLRANRATTERDVNQLTPRERDILK 164 (215) T ss_dssp ECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTT-HHHHHHHC-------CCCGGGSCHHHHHHHH T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH T ss_conf 367999999999984998986025999999999999984887568567-6788888762445457870208989999999 Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 321128834008999986528765777661368899999986014567 Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) +|+++ .|..+|++.+ .++.+||++|++||++||+...- T Consensus 165 ll~~g----~sn~~IA~~L------~iS~~TV~~h~~~i~~KL~v~~r 202 (215) T 1a04_A 165 LIAQG----LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSR 202 (215) T ss_dssp HHHTT----CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCSH T ss_pred HHHHH----CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCH T ss_conf 99986----6312679997------88687999999999998099988 No 9 >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Probab=99.93 E-value=2.2e-26 Score=185.29 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=112.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.++..+...|++.||.|..+.+++++........||++++|+.| |+++|+++|+.+|+.+++|||++|+. T Consensus 7 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlillD~~m--P~~dG~el~~~~~~~~~~piI~lt~~ 84 (136) T 2qzj_A 7 ILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIIL--SDGDGWTLCKKIRNVTTCPIVYMTYI 84 (136) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEE--TTEEHHHHHHHHHTTCCCCEEEEESC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCEEEEEEE T ss_conf 9999899999999999999879999998999999998862799999977999--89986079999983699989999962 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 2100001112220100010233333210000011122222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) ++.+++++++++||||||+|||++++|.++|++++||.+. T Consensus 85 ~~~~~~~~al~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~~ 124 (136) T 2qzj_A 85 NEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS 124 (136) T ss_dssp CCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 8999999999869988998989999999999999997303 No 10 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=99.93 E-value=2.6e-26 Score=184.86 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=111.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++|+.+|+.+++|||++|+. T Consensus 4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~m--p~~~G~~l~~~ir~~~~ipiI~lt~~ 81 (121) T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL--PDGDGIEFIRDLRQWSAVPVIVLSAR 81 (121) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEE--TTEEHHHHHHHHHTTCCCCEEEEESC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCEEEEEECC T ss_conf 9999699999999999999879999998889999999971799999980999--99897999999997479909999785 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 210000111222010001023333321000001112222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) ++.+++++++++||||||+|||++++|.++|++++||.+ T Consensus 82 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~~ 120 (121) T 1zh2_A 82 SEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (121) T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 999999999986999999799999999999999988757 No 11 >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Probab=99.92 E-value=8.5e-26 Score=181.60 Aligned_cols=120 Identities=14% Similarity=0.253 Sum_probs=109.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.| |+++|+++|+.+|+.+ ++||||+ T Consensus 10 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l 87 (154) T 3gt7_A 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM--PEMDGYALCRWLKGQPDLRTIPVILL 87 (154) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999799999999999999879999998999999999983899999980899--99988799999985845579959999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 443210000111222010001023333321000001112222222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~ 123 (223) |++++.+++++++++||||||+|||++++|.++|++++++.+... T Consensus 88 Ta~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~~~ 132 (154) T 3gt7_A 88 TILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTE 132 (154) T ss_dssp ECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCCCC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 826999999999977988799798999999999999999999999 No 12 >1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Probab=99.92 E-value=1.4e-25 Score=180.25 Aligned_cols=117 Identities=11% Similarity=0.204 Sum_probs=108.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC Q ss_conf 68970989999999999997898899-98285899999982899679999007896621799986310133210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|. .|.+++++..+.....||++++|+. |||+||+++|+.+|+.+++||||+|+ T Consensus 16 ILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~--MP~mdGle~~~~ir~~~~~piiilTa 93 (205) T 1s8n_A 16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKRIAPIVVLTA 93 (205) T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCSCEEEEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHCCCCCEEEEEC T ss_conf 9998298999999999999869979999899999999998379999999640--45860799999998569999899956 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.++.++|+++||+|||+|||++++|+++|+..+++.. T Consensus 94 ~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~ 133 (205) T 1s8n_A 94 FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205) T ss_dssp GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 7889999999982984214389999999999999998644 No 13 >1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Probab=99.92 E-value=6.6e-26 Score=182.30 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=107.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) ||||||++..+..+...|+..||.|..+.+++++..+.....||++++|+.| |+|||+++|+.+|+.+ ++||||+ T Consensus 4 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdlvllD~~m--P~mdG~e~~~~ir~~~~~~~iPVI~l 81 (459) T 1w25_A 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMM--PGMDGFTVCRKLKDDPTTRHIPVVLI 81 (459) T ss_dssp EEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHCCCCCCCCCEEEE T ss_conf 9999598999999999999789899997999999999962799999997989--99999999999970867798968999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 4432100001112220100010233333210000011122 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) |++++.+++++++++||+|||+||+++++|++||++++|+ T Consensus 82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~rIr~llr~ 121 (459) T 1w25_A 82 TALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459) T ss_dssp ECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCC T ss_conf 8899989999998669857985584012001321133330 No 14 >1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Probab=99.92 E-value=1.7e-25 Score=179.76 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=111.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++|+.+|+.+++|||++|++ T Consensus 5 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dliilD~~m--P~~dG~e~~~~~r~~~~~piI~lt~~ 82 (122) T 1zgz_A 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINL--PDENGLMLTRALRERSTVGIILVTGR 82 (122) T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHTTCCCEEEEEESS T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999499999999999999879999998999999999973999899997898--99772899999984799939999836 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 210000111222010001023333321000001112222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) ++.+++++++++|||||++|||++++|.++|++++||.. T Consensus 83 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~R~~ 121 (122) T 1zgz_A 83 SDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 (122) T ss_dssp CCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 999999999986998999798999999999999998727 No 15 >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Probab=99.92 E-value=1.1e-25 Score=180.91 Aligned_cols=117 Identities=25% Similarity=0.289 Sum_probs=110.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.| |+++|+++|++++..+++|||++|+. T Consensus 4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD~~m--p~~dG~~~l~~~~~~~~~pvi~lt~~ 81 (120) T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGLEVAKTIRKTSSVPILMLSAK 81 (120) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHHCCCCEEEEESC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999799999999999999889999998999999999985799899982999--99899999999886599819999798 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 210000111222010001023333321000001112222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) ++.+++++++++||+||+.|||++++|+++|++++||.+ T Consensus 82 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrr~~ 120 (120) T 2a9o_A 82 DSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120 (120) T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC-- T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC T ss_conf 999999999987998999898999999999999997759 No 16 >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Probab=99.92 E-value=1.7e-25 Score=179.66 Aligned_cols=117 Identities=24% Similarity=0.419 Sum_probs=109.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++++.+|+. +++|||++|+ T Consensus 3 ILvVdDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~dG~e~~~~lr~~~~~~pii~lt~ 80 (121) T 2pl1_A 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGL--PDEDGLSLIRRWRSNDVSLPILVLTA 80 (121) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHHTTCCSCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCCEEEEEC T ss_conf 9999689999999999999879999998999999999645899899988999--99874789999996399981899978 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.+++++++++||+|||.|||++++|+++|++++||.. T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~ 120 (121) T 2pl1_A 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 (121) T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 8999999999986999999798999999999999975746 No 17 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=99.92 E-value=2.5e-25 Score=178.63 Aligned_cols=114 Identities=23% Similarity=0.326 Sum_probs=106.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|.++.+++++..+....+||+++ ||++||+++|+++|+ .+.+|||++|+ T Consensus 21 ILvVEDd~~~~~~l~~~L~~~G~~v~~a~~g~~al~~l~~~~~Dlvi------Lp~~~G~ell~~ir~~~~~~piiilT~ 94 (137) T 2pln_A 21 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDKNALSFVSRIKEKHSSIVVLVSSD 94 (137) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECSTTHHHHHHHHHHHSTTSEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE------EECCCCHHHHHHHHHCCCCCCEEEEEC T ss_conf 99995999999999999998899999989999999999728999999------827876379999996288997599964 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333-3210000011122222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKV 121 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~-~eL~ari~a~lRr~~~ 121 (223) +++.+++++++++||||||+|||.. +||++||++++||... T Consensus 95 ~~~~~~~~~al~~Gaddyl~KPf~~~~eL~aRI~allRR~~~ 136 (137) T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGS 136 (137) T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC---- T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC T ss_conf 899999999998699889979999989999999999666589 No 18 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=99.92 E-value=3.5e-25 Score=177.74 Aligned_cols=116 Identities=23% Similarity=0.295 Sum_probs=110.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.| |+++|+++++.+|+.+++|||++|+. T Consensus 5 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~m--P~~~G~e~~~~~r~~~~~~ii~lt~~ 82 (120) T 3f6p_A 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGVEVCREVRKKYDMPIIMLTAK 82 (120) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTS--TTTHHHHHHHHHHTTCCSCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999399999999999999889999998999999999971899999982999--99999999999981689958999767 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 21000011122201000102333332100000111222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) ++.+++.+++++||+||+.|||++++|+++|++++||. T Consensus 83 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~lrR~ 120 (120) T 3f6p_A 83 DSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120 (120) T ss_dssp SCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 99999999997599989979999999999999997679 No 19 >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Probab=99.91 E-value=7.9e-25 Score=175.51 Aligned_cols=119 Identities=19% Similarity=0.247 Sum_probs=110.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECCCC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133-210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~lt~ 80 (223) |||||||+.++..+...|+..||.|..+.+++.+..+....+||++++|+.| |+++|+++++.+|+.+ ..|||++|+ T Consensus 6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dlvl~D~~m--P~~~G~el~~~ir~~~~~~~ii~lT~ 83 (136) T 1mvo_A 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGIEVCKQLRQQKLMFPILMLTA 83 (136) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHTTCCCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEEEC T ss_conf 8999899999999999999889999998999999999884599899826999--99988999999985499985999978 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 321000011122201000102333332100000111222222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~ 122 (223) +++.+++++++++||+|||.|||++++|+++|++++||.... T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~~ 125 (136) T 1mvo_A 84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIR 125 (136) T ss_dssp TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC--- T ss_pred CCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 799999999998699627889899999999999999887764 No 20 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=99.91 E-value=6.2e-25 Score=176.15 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=110.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) |||||||+.+++.+...|+..||.|..+.+++++........||++++|+.+ |+++|+++++.+|+.+++|+|++|+. T Consensus 6 ILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~l--P~~~g~e~~~~~~~~~~~pii~lt~~ 83 (123) T 1xhf_A 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL--PGKNGLLLARELREQANVALMFLTGR 83 (123) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHHCCCEEEEEESC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 9999699999999999999879999998999999999970899999996899--98449999999985699978999935 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 210000111222010001023333321000001112222 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) ++.+++.+++++||+||+.|||+++||.++|++++||.. T Consensus 84 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~v~~~l~R~~ 122 (123) T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 (123) T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 999999999984988888698999999999999987726 No 21 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=99.91 E-value=7.7e-25 Score=175.57 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=108.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+ ||+++|+++++++|+ .+++|||++|+ T Consensus 7 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dlvllD~---mp~~dGl~l~~~ir~~~~~~piI~lT~ 83 (142) T 2qxy_A 7 VMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVAVLSA 83 (142) T ss_dssp EEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99998989999999999998799999989999999999857999998547---863128999999998689997899973 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.+++++++++||+|||+|||++++|.++|++++++.. T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 123 (142) T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142) T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-- T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC T ss_conf 5888999999976897899798999999999999985681 No 22 >3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Probab=99.91 E-value=1.3e-24 Score=174.24 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=110.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.++.++........||++++|+.+ |+++|+++++.+|+ .+++|||++|+ T Consensus 6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvllD~~m--p~~~G~el~~~lr~~~~~~piI~lT~ 83 (132) T 3crn_A 6 ILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--PDMEGTELLEKAHKLRPGMKKIMVTG 83 (132) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--SSSBHHHHHHHHHHHCTTSEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999599999999999999869979970999999999985799999970448--99608999999998489998999976 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 321000011122201000102333332100000111222222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~ 122 (223) +++.+++++++++||+|||.|||++++|+++|++.++|.+.. T Consensus 84 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~L~~~~~e 125 (132) T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKE 125 (132) T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCC T ss_conf 599999999998799899989799999999999999999617 No 23 >3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} Probab=99.91 E-value=2.1e-25 Score=179.18 Aligned_cols=194 Identities=24% Similarity=0.282 Sum_probs=151.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC Q ss_conf 6897098999999999999789-88-99982858999999828996799990078966217999863101-332100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-VS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223) |||||||+.++.++...|+..+ +. |..+.+++++........||++++|+.+ |+++|+++++.+++ .+++|||++ T Consensus 4 IlivdD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pdlvl~d~~l--~~~~g~~~~~~l~~~~~~~~vi~~ 81 (225) T 3c3w_A 4 VFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRL--PDGNGIELCRDLLSRMPDLRCLIL 81 (225) T ss_dssp EEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEE--TTEEHHHHHHHHHHHCTTCEEEEG T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCHHHHHHHHCCCCCCCEEEE T ss_conf 999969899999999999858994899997999999999986599899982778--998615898875302899857863 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223) |+..+.....+++++||++|+.||++.+++...++++.++....+........ .............-.||+||.++|. T Consensus 82 t~~~~~~~~~~al~~Ga~~~l~K~~~~~~l~~~i~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LT~RE~eVL~ 159 (225) T 3c3w_A 82 TSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALM--AKLRGAAEKQDPLSGLTDQERTLLG 159 (225) T ss_dssp GGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHH--HHHHHHHHHSCTTTTSCHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHHHCCCCCCCCCCCCHHHHHHHH T ss_conf 15665789999998498877406777999999999998699768978999999--8864023336755679999999999 Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 321128834008999986528765777661368899999986014567771 Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 (223) Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~ 209 (223) ++++ | .|..+|++.+ .++.+||++|++++++||+.....+. T Consensus 160 ll~~--G--~snkeIA~~L------~iS~~TVk~h~~~I~~KLgv~nr~ea 200 (225) T 3c3w_A 160 LLSE--G--LTNKQIADRM------FLAEKTVKNYVSRLLAKLGMERRTQA 200 (225) T ss_dssp HHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCCSSCHH T ss_pred HHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 9993--8--9888999997------88799999999999999689999999 No 24 >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Probab=99.90 E-value=1.4e-24 Score=173.99 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=103.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC Q ss_conf 68970989999999999997898899982858999999828-9967999900789662179998631013---3210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~-~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~ 77 (223) ||+|||++..+..+...|+..||.|..+.++.++....... .||++++|+ .||++||+++|+.+|+. .++|||+ T Consensus 127 VLvVDD~~~~~~~i~~~L~~~g~~v~~a~~g~eal~~l~~~~~~DlIllD~--~MP~~dG~e~~~~iR~~~~~~~iPII~ 204 (259) T 3luf_A 127 VLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDY--YMPEIDGISLVRMLRERYSKQQLAIIG 204 (259) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECS--CCSSSCHHHHHHHHHHHCCTTTSEEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHHCCCCCCCEEEE T ss_conf 787538889999999999834662453240568999984489965999647--776754899999998378899994999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 24432100001112220100010233333210000011122222 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +|++++++++.+++++||||||+|||+++||.+||++.++|.+. T Consensus 205 lTa~~~~~~~~~~~~~Ga~d~l~KP~~~~eL~~~i~~~L~~~~~ 248 (259) T 3luf_A 205 ISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259) T ss_dssp EECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 98999989999999879999998989999999999999999999 No 25 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=99.90 E-value=1.5e-24 Score=173.73 Aligned_cols=119 Identities=16% Similarity=0.326 Sum_probs=110.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) ||+||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.+ |+++|+++|+++|+. +++||||+ T Consensus 5 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~~G~~l~~~ir~~~~~~~~piI~l 82 (127) T 2jba_A 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWML--PGGSGIQFIKHLRRESMTRDIPVVML 82 (127) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEE--TTEEHHHHHHHHHTSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999799999999999999879999998999999999971799999981889--99628999999984787799909999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~ 122 (223) |++++.+++.+++++||+||++|||++.+|.++|++++||..+. T Consensus 83 s~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~~p~ 126 (127) T 2jba_A 83 TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPM 126 (127) T ss_dssp EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCCCC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 89899999999998498587719999999999999998152548 No 26 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=99.90 E-value=3.2e-24 Score=171.66 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=107.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|.++.+++++..+.....++++++++|+.||+++|+++++.+++ .+.+|||++|+ T Consensus 6 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~~~dlvilD~~mp~~~G~~l~~~~~~~~~~~pvI~lT~ 85 (143) T 3jte_A 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99996999999999999998799999978899999999845999739997477777788999999998789996999988 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.+..++++++||+|||.|||++++|.++|+..++|.+ T Consensus 86 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 125 (143) T 3jte_A 86 HGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143) T ss_dssp TTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 8999999999986998998289999999999999999999 No 27 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=99.90 E-value=7.2e-24 Score=169.46 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=107.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.| |+++|+++|+.+|+. +++|||++ T Consensus 10 VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~m--P~~~G~el~~~ir~~~~~~~ipiI~l 87 (142) T 3cg4_A 10 VMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PGMDGWDTIRAILDNSLEQGIAIVML 87 (142) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SSSCHHHHHHHHHHTTCCTTEEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999798999999999999879999998999999999971799999983899--99868999999985755689959999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |+.++.+.+.+++++||+||++|||++++|+++++.++++. T Consensus 88 T~~~~~~~~~~a~~~G~~dyl~KP~~~~~Ll~~v~~~l~~~ 128 (142) T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV 128 (142) T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 78899999999998699889989899999999999999988 No 28 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=99.90 E-value=3.3e-24 Score=171.59 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=108.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHC-CCCCCEEC Q ss_conf 689709899999999999978988999828589999998289967999900789---66217999863101-33210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRA-HSQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~-~~~~pII~ 77 (223) |||||||+.++..+...|+..||.|..+.+++++..+....+||++++|+.||. +|++|+++++.+|+ .+++|||+ T Consensus 6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~~~~ipvI~ 85 (140) T 2qr3_A 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVL 85 (140) T ss_dssp EEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 99997999999999999997899999989999999999727999999916887777677519999999998689982899 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 244321000011122201000102333332100000111222 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) +|++++.+++++++++||+|||+|||+.++|+++|...+++. T Consensus 86 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~al~~~ 127 (140) T 2qr3_A 86 FTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140) T ss_dssp EEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 978999999999998699789979899999999999999970 No 29 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=99.90 E-value=2.6e-24 Score=172.24 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=106.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.++..+...|+..||.|..+.++..+........||++++|+. ||++||+++++.+|+ .+++||||+|+ T Consensus 6 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilD~~--mP~~dGle~~~~ir~~~~~~pvI~lT~ 83 (155) T 1qkk_A 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIR--MPGMDGLALFRKILALDPDLPMILVTG 83 (155) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESC--CSSSCHHHHHHHHHHHCTTSCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCC--CCCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 999959999999999999987998999789999999853269877765457--899989999999997298994898979 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +++.+..++++++||+|||.|||++++|..+|+..+++ T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 121 (155) T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155) T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 89999999999869988975999999999999999999 No 30 >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Probab=99.90 E-value=4.7e-24 Score=170.60 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=107.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 6897098999999999999789889-9982858999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) ||||||++.+++.+...|+..||.| ..|.+++++........|+++++++|+.||++||+++++.+|+ .+++||||+| T Consensus 39 ILiVDD~~~~~~~l~~~L~~~g~~vv~~a~~g~eAl~~~~~~~p~~dlvilD~~mP~~dG~e~~~~ir~~~~~~piI~lT 118 (157) T 3hzh_A 39 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMIS 118 (157) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 99996999999999999998799899998999999999984198918999856899997899999999719999768763 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 432100001112220100010233333210000011122 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) ++++.+.+.+++++||+||+.|||+.++|+++|+++++| T Consensus 119 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r 157 (157) T 3hzh_A 119 ALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157) T ss_dssp SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC T ss_conf 279999999999859988997989999999999999678 No 31 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=99.89 E-value=1.8e-23 Score=166.91 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=106.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC Q ss_conf 689709899999999999978988999828589999-9982899679999007896621799986310133210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~ 80 (223) |||||||+..+..+...|+..||.|..+.+++++.. +.....||++++|+.|| +|++|+++++.+|+.+++|||++|+ T Consensus 8 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp-~g~dG~e~~~~ir~~~~~PvI~lT~ 86 (140) T 3h5i_A 8 ILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELG-EGMDGVQTALAIQQISELPVVFLTA 86 (140) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCS-SSCCHHHHHHHHHHHCCCCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCEEEEEC T ss_conf 999959899999999999987999999898999999998469998999726653-3578999999998569998999989 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +++.+++.+++++||+||++|||++++|+++|+..+|+.+. T Consensus 87 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~ 127 (140) T 3h5i_A 87 HTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140) T ss_dssp SSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999879998998989999999999999999887 No 32 >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Probab=99.89 E-value=1.1e-23 Score=168.20 Aligned_cols=114 Identities=12% Similarity=0.155 Sum_probs=105.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) ||+|||++.+++.+...|+..||.|..+.++.++.......+||++++|+. ||+++|+++|+.+|+.+ ++|||++ T Consensus 5 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~~--mP~~~G~el~~~ir~~~~~~~iPiI~l 82 (122) T 3gl9_A 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPVIVL 82 (122) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 999969999999999999987999999899999999998379999985102--899988999999983887899989998 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 443210000111222010001023333321000001112 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) |++++.+++.+++++||+||++|||++++|+++|++++. T Consensus 83 T~~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~v~~~L~ 121 (122) T 3gl9_A 83 TAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122) T ss_dssp ESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC T ss_conf 279999999999987998899798999999999999858 No 33 >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Probab=99.89 E-value=2.4e-23 Score=166.19 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=109.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) |||||||+..++.+...|+..||.|..+.+++++.......+||++++|+.| |++||+++++.+|+.+ ++|||++ T Consensus 6 ILIVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~ipvI~l 83 (138) T 3c3m_A 6 ILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMM--EPMDGWETLERIKTDPATRDIPVLML 83 (138) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999799999999999999879999998999999999753899899970678--99988999999984865589987998 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 4432100001112220100010233333210000011122222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) |+.++..++.+++++||+||++|||++++|.++++++++|... T Consensus 84 s~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~l~~~l~r~~~ 126 (138) T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHS 126 (138) T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-- T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 6379899999998679988998989999999999999996520 No 34 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=99.89 E-value=4.7e-24 Score=170.61 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=108.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) ||||||++..+..+...|+..||.|..+.++.++..+.....||++++|+.| |++||+++++.+|+.+ ++|||++ T Consensus 11 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l 88 (147) T 2zay_A 11 IMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKISGMDLFNSLKKNPQTASIPVIAL 88 (147) T ss_dssp EEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHTSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999799999999999999879999998999999999983799999985999--99975189999984855689718997 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 443210000111222010001023333321000001112222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) |+.++.+++.+++++||+|||+|||++++|+++|++++|+.. T Consensus 89 S~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 130 (147) T 2zay_A 89 SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147) T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 268999999999987998899799999999999999999874 No 35 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Probab=99.89 E-value=1.4e-23 Score=167.56 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=109.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+..+..+...|+..||.|..+.+++++........||++++|+.| |++||+++++.+|+. +++|||++|+ T Consensus 132 iLvvdD~~~~~~~l~~~L~~~g~~v~~a~~g~~Al~~~~~~~~dlil~D~~m--P~mdG~e~~~~ir~~~~~~pii~lta 209 (254) T 2ayx_A 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNM--PNMDGYRLTQRIRQLGLTLPVIGVTA 209 (254) T ss_dssp EEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESS--CSSCCHHHHHHHHHHHCCSCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999098999999999999879999998999999999984799899995036--89983899999996299997999989 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +.+.+++.+++++|+||||.|||++++|.++++..++|.+ T Consensus 210 ~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~r~r 249 (254) T 2ayx_A 210 NALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254) T ss_dssp STTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 9999999999986998999798999999999999999999 No 36 >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Probab=99.89 E-value=2.3e-23 Score=166.29 Aligned_cols=116 Identities=12% Similarity=0.190 Sum_probs=105.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) |||||||+.++..+...|+..||.|..+.+++++........||++++|+.+| ++++|+++|+++|+.+ ++|||++ T Consensus 8 ILvVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~pdliilD~~lp-~~~~G~~l~~~ir~~~~~~~iPii~l 86 (127) T 2gkg_A 8 ILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLS-AGQNGYLICGKLKKDDDLKNVPIVII 86 (127) T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCG-GGCBHHHHHHHHHHSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 99998999999999999998799999989999999999847999999975777-68889999999983888899838999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |+.++. ++.+++++|||||++|||++++|+++|++++++. T Consensus 87 t~~~~~-~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L~~p 126 (127) T 2gkg_A 87 GNPDGF-AQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127) T ss_dssp ECGGGH-HHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC T ss_pred ECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 689859-9999998699899989899999999999987799 No 37 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=99.89 E-value=3.1e-23 Score=165.46 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=105.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--CCCEECCC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133--21000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~--~~pII~lt 79 (223) |||||||+.++..+...|+..||.|..+.++.++........||++++|+.| |++||+++|+++|+.+ +.|+|+++ T Consensus 9 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD~~m--P~~dG~el~~~ir~~~~~~~~~Iil~ 86 (132) T 3lte_A 9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSM--PKLDGLDVIRSLRQNKVANQPKILVV 86 (132) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCB--TTBCHHHHHHHHHTTTCSSCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999799999999999999889999998899999999974799999996898--78889999999984588898918999 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 432100001112220100010233333210000011122222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +..+.+++.+++++||+||++|||++++|+++|+++++|... T Consensus 87 s~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ll~~G~~ 128 (132) T 3lte_A 87 SGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132) T ss_dssp CCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---- T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCC T ss_conf 559999999999879989998989999999999999957898 No 38 >1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A Probab=99.89 E-value=1.7e-23 Score=167.05 Aligned_cols=100 Identities=20% Similarity=0.280 Sum_probs=93.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 22112222222222222222222332124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) .++.+++|++.+|+..++++++|+.+.||++||.||.+|++|+|+++||++|++.+||. +...++++|++||+|||+|| T Consensus 5 ~~~~i~~~~l~lD~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vw~~-~~~~~~~~l~~~I~rLRkkl 83 (106) T 1gxq_A 5 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVHIRRLRKAL 83 (106) T ss_dssp TTCCEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCS-SSCCCTHHHHHHHHHHHHHH T ss_pred CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHH T ss_conf 25779999999986789999999998759999999999986767677699999987387-76899877999999999985 Q ss_pred CCCCCCCCEEEECCCCEEECC Q ss_conf 145677715778686303138 Q gi|254780526|r 202 RNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 202 ~~~~~~~~I~tvrg~GY~l~~ 222 (223) +..+....|+|+||.||+|+. T Consensus 84 ~~~~~~~~I~Tvrg~GY~l~~ 104 (106) T 1gxq_A 84 EPGGHDRMVQTVRGTGYRFST 104 (106) T ss_dssp GGGTGGGGEEEETTTEEEECS T ss_pred HCCCCCCCEEEECCCCEEEEE T ss_conf 125999829997680066832 No 39 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=99.88 E-value=3.4e-23 Score=165.20 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=105.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++++.+|+ .+++|||++|+ T Consensus 6 ILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~m--P~~~G~~ll~~ir~~~~~~pvI~lT~ 83 (126) T 1dbw_A 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRM--PDMSGVELLRNLGDLKINIPSIVITG 83 (126) T ss_dssp EEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCS--TTSCHHHHHHHHHHTTCCCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEECCCCC--CCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 9999699999999999999879999998999999999763799879710368--88882999999996199983999968 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +++.+.+++++++||+||+.|||++++|..+|+..+++ T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~ 121 (126) T 1dbw_A 84 HGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126) T ss_dssp TTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 89999999999879988998969999999999999999 No 40 >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Probab=99.88 E-value=8.3e-24 Score=169.07 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=109.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.++..+...|+..||.|..+.+++++..+.....||++++|+.+ |+++|+++++.+|+. +++|||++|+ T Consensus 7 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~pdlillD~~m--p~~~G~~l~~~ir~~~~~~piI~lt~ 84 (137) T 3cfy_A 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKL--PDMSGEDVLDWINQNDIPTSVIIATA 84 (137) T ss_dssp EEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBC--SSSBHHHHHHHHHHTTCCCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999799999999999999879999998999999999984799999983899--99988999999997489984899987 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +++.++.++++++||+||+.|||++++|.++|+..++|.+. T Consensus 85 ~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l 125 (137) T 3cfy_A 85 HGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137) T ss_dssp SCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 79999999998679868998989999999999999999889 No 41 >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Probab=99.88 E-value=3.7e-23 Score=164.99 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=105.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) |||||||+.+++.+...|+ .||.|..+.++.++........||++++|+.| |+++|+++|+.+|+.+ ++|||++ T Consensus 7 ILiVDD~~~~r~~l~~~L~-~~~~v~~a~~g~eal~~l~~~~pdliilD~~m--P~~dG~el~~~ir~~~~~~~iPiI~l 83 (133) T 3nhm_A 7 VLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DGMDGYALCGHFRSEPTLKHIPVIFV 83 (133) T ss_dssp EEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHSTTTTTCCEEEE T ss_pred EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999498999999999997-89989998999999999984799999975999--99999999999982888899878997 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 4432100001112220100010233333210000011122222221 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~ 124 (223) |+.++. ....++++||||||.|||++++|+++|+++++|.+.... T Consensus 84 T~~~~~-~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~l~r~~~eG~ 128 (133) T 3nhm_A 84 SGYAPR-TEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAEGH 128 (133) T ss_dssp ESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC---- T ss_pred ECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 078849-999998779978998999999999999999988970699 No 42 >2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A Probab=99.88 E-value=2.9e-23 Score=165.60 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=92.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 22112222222222222222222332124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) .++.+.+|++.+|+..+++..+|+.+.||++||.||.+|++|+|++|||++|++.+||. +...++++|++||+|||+|| T Consensus 10 ~~~~i~~g~l~id~~~~~v~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL 88 (120) T 2z9m_A 10 VTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGY-DYFGDVRTVDVTIRRLREKI 88 (120) T ss_dssp --CCEEETTEEEEGGGTEEEETTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCT-TCCSCTHHHHHHHHHHHHHH T ss_pred CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHCCCC-CCCCCCCEEHHHHHHHHHHH T ss_conf 99849994899988889999999999769999999999997899637568966650377-77898877035899999997 Q ss_pred CCCC-CCCCEEEECCCCEEECCC Q ss_conf 1456-777157786863031388 Q gi|254780526|r 202 RNKL-GFDPVDSKRFLGYSIDWN 223 (223) Q Consensus 202 ~~~~-~~~~I~tvrg~GY~l~~n 223 (223) +..+ ...+|+||||.||+|+.+ T Consensus 89 ~~~~~~~~~I~Tvrg~GY~L~~~ 111 (120) T 2z9m_A 89 EDDPSHPEYIVTRRGVGYFLQQH 111 (120) T ss_dssp CSSTTSCSSEEEETTTEEEECCC T ss_pred HHCCCCCCEEEEECCEEEEEECC T ss_conf 50789998499938972887468 No 43 >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Probab=99.88 E-value=4.1e-23 Score=164.70 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=107.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) ||||||++.++..+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++++.+|+. +++|||++|+ T Consensus 6 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dliilD~~m--P~~~G~el~~~ir~~~~~~pii~lt~ 83 (124) T 1srr_A 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKI--PGMDGIEILKRMKVIDENIRVIIMTA 83 (124) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC--TTCCHHHHHHHHHHHCTTCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999799999999999999869989995998999999980799889985369--99988999999996099998999988 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +++.+...+++++||+||++|||++++|..+++..+++ T Consensus 84 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~L~~ 121 (124) T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124) T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 89999999999879989998989999999999999875 No 44 >2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae} Probab=99.88 E-value=2.3e-23 Score=166.24 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=91.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 21122222222222222222223321242101234432112883400899998652876577766136889999998601 Q gi|254780526|r 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 (223) Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~ 202 (223) +..+++|++++|...++++++|+.+.||++||.||.+|++++|++|||++|++.+||. +...++++|++||+|||+||+ T Consensus 3 ~~i~~~gdl~lD~~~r~~~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkL~ 81 (112) T 2jzy_A 3 ATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM-NFDSDTNVIDVAVRRLRSKID 81 (112) T ss_dssp CCCEEETTEEECTTTCCEEETTEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCC-CSSCSTTHHHHHHHHHHTTTT T ss_pred CCEEEEECEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHC T ss_conf 8638994799986899999999998659999999999984889874399999861488-756541129999999999856 Q ss_pred CCCCCCCEEEECCCCEEECC Q ss_conf 45677715778686303138 Q gi|254780526|r 203 NKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 203 ~~~~~~~I~tvrg~GY~l~~ 222 (223) +.+.+.+|+|+||.||+|+. T Consensus 82 ~~~~~~~I~Tvrg~GY~l~v 101 (112) T 2jzy_A 82 DDFEPKLIHTVRGAGYVLEI 101 (112) T ss_dssp TTSSCCCEECCTTTCBEECC T ss_pred CCCCCCEEEEECCCCEEEEC T ss_conf 75899839996882479840 No 45 >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Probab=99.88 E-value=6.2e-23 Score=163.56 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=107.5 Q ss_pred EEEECCCHHHHHHHHHHHHH--CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEE Q ss_conf 68970989999999999997--8988999828589999998289967999900789662179998631013---321000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGD--DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~--~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII 76 (223) |||||||+..++.+...|+. .|+.|..+.++.++..+....+||++++|+.| |++||+++++.+|+. +++||| T Consensus 11 ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~~~pDlillD~~m--P~~dG~el~~~ir~~~~~~~ipvI 88 (143) T 3cnb_A 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKSTPATANIIVI 88 (143) T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHTSTTTTTSEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEE T ss_conf 999919999999999999827898089998999999999972799999980888--999869999999847888998499 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 024432100001112220100010233333210000011122222 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) ++|+.++.+++.+++++||+|||.|||++++|.++|+.+++|.+. T Consensus 89 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 133 (143) T 3cnb_A 89 AMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143) T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC- T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHH T ss_conf 998489989999999769989998989999999999999971576 No 46 >3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Probab=99.88 E-value=3.9e-23 Score=164.86 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=103.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEECC Q ss_conf 68970989999999999997898899982858999-9998289967999900789662179998631013--32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~-~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~pII~l 78 (223) |||||||+.+++.+...|+..||.+..+.+++++. .+....+||++++|+ .||+++|+++++.+|+. +++|||++ T Consensus 10 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~--~mP~~~G~el~~~ir~~~~~~~piI~l 87 (136) T 3hdv_A 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDL--RMQPESGLDLIRTIRASERAALSIIVV 87 (136) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECS--CCSSSCHHHHHHHHHTSTTTTCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHHCCCCCCEEEEE T ss_conf 999979999999999999987999999899999999997579998899879--899998999999999557999919999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~ 122 (223) |++++.+++.+++++||+|||.|||++++|..+|+..+|+.++- T Consensus 88 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~L~~~eG~ 131 (136) T 3hdv_A 88 SGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH 131 (136) T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----- T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 88899999999998699989989899999999999999981799 No 47 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=99.88 E-value=4.8e-23 Score=164.29 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=106.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|.++.+++++.......+||++++|+.| |++||+++++.+|+. +++|||++|+ T Consensus 10 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~m--P~~dG~~~~~~ir~~~~~~piI~lt~ 87 (130) T 3eod_A 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM--PRMNGLKLLEHIRNRGDQTPVLVISA 87 (130) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTCCCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999698999999999999889999998999999999852898874574217--99989999999996098998999989 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCC Q ss_conf 321000011122201000102333-332100000111222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~-~~eL~ari~a~lRr~ 119 (223) +++.+++.+++++||+||+.|||. .++|..++++.+++. T Consensus 88 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~~L~~~i~~~L~~~ 127 (130) T 3eod_A 88 TENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130) T ss_dssp CCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-- T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 9999999999986998899799997999999999985176 No 48 >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Probab=99.88 E-value=7.6e-23 Score=163.02 Aligned_cols=117 Identities=13% Similarity=0.238 Sum_probs=108.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) ||||||++..++.+...|+..||.|..+.+++++..+.....||++++|+.| |+++|+++++.+|+. +++|||++ T Consensus 4 iLiVdD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD~~m--p~~~G~el~~~ir~~~~~~~iPii~l 81 (124) T 1mb3_A 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQL--PEISGLEVTKWLKEDDDLAHIPVVAV 81 (124) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBC--SSSBHHHHHHHHHHSTTTTTSCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999589999999999999879999998999999999983799999978999--99847999999982887799968999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 443210000111222010001023333321000001112222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) |+.++.+++.+++++||+||++||+++.+|+.+++.+++|.. T Consensus 82 s~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~r~p 123 (124) T 1mb3_A 82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQP 123 (124) T ss_dssp C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCCC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC T ss_conf 898998999999977998999898999999999999983399 No 49 >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} Probab=99.88 E-value=7.2e-23 Score=163.16 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=103.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCC-CCHHHHHHHHHHCCCCCCEECCC Q ss_conf 68970989999999999997898899-98285899999982899679999007896-62179998631013321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~-~~~g~~l~~~lr~~~~~pII~lt 79 (223) |||||||+..+..+...|+..||.|. ++.+++++..+....+||++++|+.| | ++||+++++.+|+.+++|||++| T Consensus 163 ILiVdD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a~~~~~~~~~Dlil~Di~m--p~~mdG~~~~~~ir~~~~~piI~lT 240 (286) T 3n0r_A 163 VLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQL--ADGSSGIDAVKDILGRMDVPVIFIT 240 (286) T ss_dssp EEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCC--TTSCCTTTTTHHHHHHTTCCEEEEE T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 99988879999999999997699748861328999999751799889981788--7898899999999866998389995 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 4321000011122201000102333332100000111222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) ++. +++.+++++|+||||.|||++++|.++|+..+++. T Consensus 241 a~~--~~~~~~~~~g~~~yl~KP~~~~~L~~~i~~aL~~~ 278 (286) T 3n0r_A 241 AFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286) T ss_dssp SCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS T ss_pred CCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC T ss_conf 688--89999998699989989899999999999999854 No 50 >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Probab=99.88 E-value=2.4e-22 Score=159.87 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=100.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++++++|+ .+++|||++|+ T Consensus 4 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvilD~~m--P~~~G~e~~~~ir~~~~~~pii~lt~ 81 (116) T 3a10_A 4 ILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM--PGISGLEVAGEIRKKKKDAKIILLTA 81 (116) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCCEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCEEEEEC T ss_conf 9999299999999999999879999998999999999984799989983688--99999999999984399897999989 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 321000011122201000102333332100000111 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223) +++.++ ++..+||+||+.|||++++|.+++++++ T Consensus 82 ~~~~~~--~~~~~Ga~~~l~KP~~~~~L~~~v~~~L 115 (116) T 3a10_A 82 YSHYRS--DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116) T ss_dssp CGGGGG--CGGGGGSSEEEECCSSTHHHHHHHHHHT T ss_pred CCCHHH--HHHHCCCCEEEECCCCHHHHHHHHHHHC T ss_conf 789999--9982699889989899999999999974 No 51 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=99.88 E-value=9.7e-23 Score=162.33 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=104.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 68970989999999999997898899-982858999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) |||||||+.+++.+...|+..||.|. .+.+++++..+....+||++++|+. ||++||+++++++|+ .+++|||++| T Consensus 5 ILiVDD~~~~r~~l~~~L~~~g~~v~~~a~~g~~al~~~~~~~~dlii~D~~--mP~~~G~e~~~~ir~~~~~~~ii~lt 82 (120) T 1tmy_A 5 VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKIIVCS 82 (120) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 9999199999999999999879989999899999999998369999999636--89997999999999758799789997 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 43210000111222010001023333321000001112 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) ++++.+...+++++||+|||.|||++++|+.+++.+.| T Consensus 83 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v~r 120 (120) T 1tmy_A 83 AMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120 (120) T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC- T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCC T ss_conf 42899999999986998999798999999999999709 No 52 >3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Probab=99.88 E-value=5.4e-23 Score=163.94 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=109.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC Q ss_conf 68970989999999999997898899-98285899999982899679999007896621799986310133210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~ 80 (223) |||||||+.++..+...|++.||.|. .+.+++++..+.....||++++|+.+| ++++|+++++.+|+.+++|||++|+ T Consensus 12 ILvVDD~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~mp-~~~dG~~l~~~lr~~~~~piI~lt~ 90 (140) T 3cg0_A 12 VLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLC-GALDGVETAARLAAGCNLPIIFITS 90 (140) T ss_dssp EEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCC-SSSCHHHHHHHHHHHSCCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCEEEEEC T ss_conf 999979999999999999987998999978999999999827998899976787-6798999999998579996899966 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112222222 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~ 123 (223) .++.+++.+++++||+|||.|||++++|.++|+..++|.+... T Consensus 91 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ee 133 (140) T 3cg0_A 91 SQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEE 133 (140) T ss_dssp CCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC T ss_conf 8999999999987999899798999999999999999999965 No 53 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Probab=99.88 E-value=6.2e-23 Score=163.56 Aligned_cols=115 Identities=14% Similarity=0.242 Sum_probs=106.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.++.++........||++++|+.| |+++|+++++.+|+ .+++|||++|+ T Consensus 3 ILIVDDd~~i~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlvllDl~m--P~~dGlell~~ir~~~p~~pVIvlT~ 80 (368) T 3dzd_A 3 VLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWM--PDGDGVNFIDFIKENSPDSVVIVITG 80 (368) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEE--TTEETTTHHHHHHHHCTTCEEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 9999289999999999999779989997999999999871799999997989--99999999999996399875445567 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 32100001112220100010233333210000011122 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +++.+..++++++||+||+.|||++++|..+|+..+++ T Consensus 81 ~~~~~~av~Al~~GA~Dyl~KP~~~~~L~~~I~~ale~ 118 (368) T 3dzd_A 81 HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368) T ss_dssp SSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH T ss_conf 79999999999748763205885379999999999999 No 54 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=99.87 E-value=6.9e-23 Score=163.26 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=107.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.+++++..+.....||++++|+.| |+++|+++++.+|+ .+++|||++|+ T Consensus 17 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvi~D~~m--P~~~G~ell~~ir~~~~~~piI~lT~ 94 (153) T 3hv2_A 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQMDGPTLLARIHQQYPSTTRILLTG 94 (153) T ss_dssp EEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHHCTTSEEEEECC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999799999999999999879999998999999999872799999983678--89988999999998689996899979 Q ss_pred CCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 321000011122201-0001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~~GA-ddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.+..+++++.|| +|||.|||++++|..+|+..+++.. T Consensus 95 ~~~~~~~~~a~~~Gav~~yl~KP~~~~~L~~~i~~~l~~~~ 135 (153) T 3hv2_A 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153) T ss_dssp CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999779988778898999999999999999999 No 55 >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Probab=99.87 E-value=5.9e-23 Score=163.71 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=105.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+..++.+...|+..|+.|..+.+++++..+.....||++++|+.| |++||+++++++|+. +++|||++|+ T Consensus 10 VLiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~m--P~~dG~el~~~ir~~~~~~piI~lT~ 87 (137) T 3hdg_A 10 ILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKLGGLEMLDRIKAGGAKPYVIVISA 87 (137) T ss_dssp EEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHTTCCCEEEECCC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999588999999999999679999998999999999874799899973789--99989999999995098995899989 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) +++.+...+++++||+|||+||+++++|.++|+.+.+ T Consensus 88 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~ 124 (137) T 3hdg_A 88 FSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137) T ss_dssp CCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 8999999999986998999798999999999999998 No 56 >2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583} Probab=99.87 E-value=6.5e-23 Score=163.43 Aligned_cols=101 Identities=20% Similarity=0.354 Sum_probs=92.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 22211222222222222222222233212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +.+..+.+|++.+|+.+++++++|+.+.||++||.||.+|++|+|++|||++|++.+||. +...++++|++||+|||+| T Consensus 16 ~~~~~i~~G~l~ld~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vWg~-~~~~~~~sl~~~I~rLRkK 94 (121) T 2hwv_A 16 PRGSHMTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWGY-DYFGDVRTVDVTVRRLREK 94 (121) T ss_dssp ---CCEEETTEEECSSSSEEEETTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCG-GGTTCHHHHHHHHHHHHHH T ss_pred CCCCEEEEECEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCEEEEHHHHHHHHH T ss_conf 999989990999987889999999998769999999999987889988999999997198-7667850785699999998 Q ss_pred CCCCCC-CCCEEEECCCCEEECC Q ss_conf 014567-7715778686303138 Q gi|254780526|r 201 LRNKLG-FDPVDSKRFLGYSIDW 222 (223) Q Consensus 201 L~~~~~-~~~I~tvrg~GY~l~~ 222 (223) |+..+. ..+|+|+||+||+|+. T Consensus 95 l~~~~~~~~~I~Tvrg~GY~l~~ 117 (121) T 2hwv_A 95 IEDSPSHPTYLVTRRGVGYYLRN 117 (121) T ss_dssp HCSSTTSCSSEEEETTTEEEECC T ss_pred HHHCCCCCCEEEEECCEEEEECC T ss_conf 76168999869997783368569 No 57 >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Probab=99.87 E-value=7e-23 Score=163.25 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=103.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.++..+...|+ .||.|..+.+++++..+.....||++++|+. ||+++|+++++.+|+ .+++|+|++|+ T Consensus 4 ILiVDDd~~~~~~l~~~L~-~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~--mP~~~G~ell~~ir~~~~~~~vI~lt~ 80 (139) T 2jk1_A 4 ILLVDDEPHSLAAMKLALE-DDFDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPETVRIIITG 80 (139) T ss_dssp EEEECSSHHHHHHHHHHHT-TTSCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTTSEEEEEES T ss_pred EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999499999999999998-7999999899999999997289999998556--789855999999998189995899989 Q ss_pred CCCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 321000011122-2010001023333321000001112222 Q gi|254780526|r 81 YPSLQTTLDFFD-SGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 81 ~~~~~~~i~~l~-~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +++.++.++++. +||+|||+|||++++|.++++..+++.. T Consensus 81 ~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~v~~~~~~~~ 121 (139) T 2jk1_A 81 YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139) T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 79989999999985998089899999999999999999999 No 58 >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A* Probab=99.87 E-value=3e-23 Score=165.54 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=104.9 Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC Q ss_conf 68970989999999999997-8988999828589999998289967999900789662179998631013---3210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~ 77 (223) ||||||++.++..+...|.. .||.|..+.++.++..+....+||++++|+.| |++||+++|+.+|+. .++|||+ T Consensus 21 ILiVDD~~~~~~~l~~~L~~~~g~~v~~a~~g~eal~~~~~~~pDlvllD~~m--P~~dGlel~~~iR~~~~~~~~pii~ 98 (358) T 3bre_A 21 VLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVM--PGVDGLTLLAAYRGNPATRDIPIIV 98 (358) T ss_dssp EEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBC--SSSBHHHHHHHHTTSTTTTTSCEEE T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCEEEE T ss_conf 99995999999999999853488399998999999999984499999980888--9999999999997364557962999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 2443210000111222010001023333321000001112 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) +|++++.+.+.+++++||+|||.|||++.|+.++++..++ T Consensus 99 lt~~~d~~~~~~al~~Ga~Dfl~KP~~~~el~~~~~~~l~ 138 (358) T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358) T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC T ss_conf 6354026788876225653463158763777777764101 No 59 >2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99} Probab=99.87 E-value=1.2e-22 Score=161.86 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=92.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 22112222222222222222222332124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) .++.+++|++.+|+..++++.+|+.+.||++||.||.+|++|+|++|||++|++.+||. +..+++++|++||+|||||| T Consensus 3 ~~~~i~~g~l~ld~~~~~v~~~~~~v~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkl 81 (109) T 2hqn_A 3 GSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEE-PEMVTPNVIEVAINQIRQKM 81 (109) T ss_dssp CCCCEEETTEEEETTTTEEEETTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCS-CGGGCTTHHHHHHHHHHHHT T ss_pred CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHH T ss_conf 99869994999988889999999999649999999999996799987899999986097-77767440999999999986 Q ss_pred CCCCCCCCEEEECCCCEEECC Q ss_conf 145677715778686303138 Q gi|254780526|r 202 RNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 202 ~~~~~~~~I~tvrg~GY~l~~ 222 (223) +..+....|+||||.||+|.. T Consensus 82 ~~~~~~~~I~Tv~g~GYrl~~ 102 (109) T 2hqn_A 82 DKPLGISTVETVRRRGYRFCY 102 (109) T ss_dssp TTTSCCCCEEECSSSEEEECC T ss_pred HCCCCCCEEEEECCCCEEECC T ss_conf 055999859997286438877 No 60 >2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV} Probab=99.87 E-value=1.5e-22 Score=161.09 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=90.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 22221122222222222222222223321242101234432112883400899998652876577766136889999998 Q gi|254780526|r 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ++.+..+.+|++++|..+++++.+|+.+.||++||.||.+|+.|+|++|||++|.+.+||. +...++++|++||+|||+ T Consensus 6 ~~~~~~l~~g~l~ld~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~l~~~I~rLRk 84 (110) T 2pmu_A 6 EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRY-DFGGDVNVVESYVSYLRR 84 (110) T ss_dssp ----CEEEETTEEEETTTCCEEETTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCT-TCCSSSCHHHHHHHHHHH T ss_pred CCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH T ss_conf 8999869994899988889999999997568999999999997799765799998512577-778884889999999999 Q ss_pred HCCCCCCCCCEEEECCCCEEECC Q ss_conf 60145677715778686303138 Q gi|254780526|r 200 KLRNKLGFDPVDSKRFLGYSIDW 222 (223) Q Consensus 200 KL~~~~~~~~I~tvrg~GY~l~~ 222 (223) ||+.. +..+|+|+||.||+|+. T Consensus 85 kL~~~-~~~~I~Tv~g~GY~l~~ 106 (110) T 2pmu_A 85 KIDTG-EKRLLHTLRGVGYVLRE 106 (110) T ss_dssp HHCCS-SSCCEEEETTTEEEECC T ss_pred HHCCC-CCCCEEEECCCCEEECC T ss_conf 73779-99809995890279788 No 61 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=99.87 E-value=2e-22 Score=160.40 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=106.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|.++.+++++..+.....||++++|+.| |+++|+++++.+|+ .+++|||++|+ T Consensus 10 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD~~m--p~~~G~~~l~~ir~~~~~~piI~lt~ 87 (154) T 2rjn_A 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PEMGGEVFLEQVAKSYPDIERVVISG 87 (154) T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSSCHHHHHHHHHHHCTTSEEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCCHHHHHHHHHHCCCCCEEEEEC T ss_conf 9999799999999999999879989998999999999862899889966888--88881899999998588997899986 Q ss_pred CCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCC Q ss_conf 321000011122201-00010233333210000011122 Q gi|254780526|r 81 YPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 81 ~~~~~~~i~~l~~GA-ddyl~KP~~~~eL~ari~a~lRr 118 (223) .++.+..+++++.|| ||||.|||++++|..+|+..+++ T Consensus 88 ~~~~~~~~~ai~~Gavd~yL~KP~~~~~L~~~i~~al~~ 126 (154) T 2rjn_A 88 YADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154) T ss_dssp GGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH T ss_conf 699999999997699987788979999999999999999 No 62 >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Probab=99.87 E-value=5.4e-23 Score=163.93 Aligned_cols=198 Identities=15% Similarity=0.110 Sum_probs=139.3 Q ss_pred EEEECCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHH--HHCCCCEEEEEEECCCCCCHHHHHHHHH-HC-CCCCCEE Q ss_conf 689709899999999999978-98899982858999999--8289967999900789662179998631-01-3321000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRII-RA-HSQVPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~l~--~~~~~d~~iid~~l~~~~~~g~~l~~~l-r~-~~~~pII 76 (223) |+||||++.++..++..|+.. +..+......+...+.. ....+|++++|+ .+|+.+|+..+..+ +. .+++||| T Consensus 10 VllvdD~~l~~~~L~~~Le~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~D~--~~~~~~~~~~~~~~~~~~~p~~~vi 87 (225) T 3klo_A 10 VRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDY--SRISDDVLTDYSSFKHISCPDAKEV 87 (225) T ss_dssp EEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEG--GGCCHHHHHHHHHHHHHHCTTCEEE T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 99982879999999999947899649999757689998624425888899723--6899736999999999758998499 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 02443210000111222010001023333321000001112222222112222222222222222222332124210123 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l 156 (223) ++|+..+......++++||++|+.|+.++++|...|+++++.....++.+...-+.-...............||+||+++ T Consensus 88 vlt~~~~~~~~~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eV 167 (225) T 3klo_A 88 IINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQI 167 (225) T ss_dssp EEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHH T ss_conf 99615668999999986995999779999999999999847975310478888876531466533232134422256543 Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 4432112883400899998652876577766136889999998601456777157 Q gi|254780526|r 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 (223) Q Consensus 157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~ 211 (223) |.++++ | .|..+|++.+ .++.+||++|++++++||+...-.+.+. T Consensus 168 L~ll~~--G--~snkeIA~~L------~iS~~TVk~h~~~i~~KLgv~nr~el~~ 212 (225) T 3klo_A 168 IKLLGS--G--ASNIEIADKL------FVSENTVKTHLHNVFKKINAKNRLQALI 212 (225) T ss_dssp HHHHTT--T--CCHHHHHHHT------TCCHHHHHHHHHHHTTTSCCSSHHHHHH T ss_pred HHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 035533--9--9799999997------8899999999999999868999999999 No 63 >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Probab=99.87 E-value=1.8e-22 Score=160.66 Aligned_cols=113 Identities=21% Similarity=0.242 Sum_probs=101.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+.+++.+...|+..||.|..+.++.++..+.....||++++|+. ||++||+++|+++|+. +++|||++|+ T Consensus 8 iLiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~--mP~~~G~e~~~~i~~~~~~~pvi~lt~ 85 (394) T 3eq2_A 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLR--MPQIDGLELIRRIRQTASETPIIVLSG 85 (394) T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCC--SSSSCTHHHHHHHHHTTCCCCEEEC-- T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHCCCCCCEEEEEE T ss_conf 999979999999999999978999999899999999986389999999897--899989999999985399983899980 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCC Q ss_conf 321000011122201000102333332100-000111 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILA-RVAAIY 116 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~a-ri~a~l 116 (223) .++.+++++++++||+||++||++..|++. +|+..+ T Consensus 86 ~~~~~~~~~~l~~Ga~dyl~KP~~~~~~~~~~i~~~l 122 (394) T 3eq2_A 86 AGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394) T ss_dssp -CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 5878999999976972089779986799999999876 No 64 >1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A Probab=99.87 E-value=1.6e-22 Score=161.02 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=91.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 22112222222222222222222332124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) .+..+.+|++.+|+..++++++++.+.||++||.||.+|+.|+|++|||++|.+.+||. +..+++++|++||+|||+|| T Consensus 5 ~~~~i~~g~~~ld~~~~~l~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~-~~~~~~~~i~~~I~rLRkkl 83 (110) T 1opc_A 5 EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGR-EYSAMERSIDVQISRLRRMV 83 (110) T ss_dssp ---CEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCS-SSCTTSSCHHHHHHHHHHHH T ss_pred CCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHH T ss_conf 77879997999998899999999999759999999999986477764199998784386-55767478999999999987 Q ss_pred CCCCC-CCCEEEECCCCEEECC Q ss_conf 14567-7715778686303138 Q gi|254780526|r 202 RNKLG-FDPVDSKRFLGYSIDW 222 (223) Q Consensus 202 ~~~~~-~~~I~tvrg~GY~l~~ 222 (223) +..+. ..+|+|+||.||+|.. T Consensus 84 ~~~~~~~~~I~Tv~g~GY~l~~ 105 (110) T 1opc_A 84 EEDPAHPRYIQTVWGLGYVFVP 105 (110) T ss_dssp CSCTTSCSSEEEETTTEEEECC T ss_pred HHCCCCCCEEEEECCEEEEECC T ss_conf 5368999849995786379856 No 65 >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Probab=99.87 E-value=9.4e-24 Score=168.74 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=108.4 Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC Q ss_conf 9689709899999999999978988999828589999998289967999900789662179998631013-321000024 Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79 (223) Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt 79 (223) .|||||||+.++..+...|+..||.|..+.+++++........||++++|+.+ |+++|+++++.+|+. +.+||+++| T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~l--p~~~G~el~~~l~~~~~~~pii~~t 82 (124) T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVIIMT 82 (124) T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCCBC T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 89999599999999999999889999998999999999983899999875889--9984599999999858999199998 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 43210000111222010001023333321000001112222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) +.++.+++++++++||+||+.|||++++|.++++..++|.+ T Consensus 83 ~~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~l~~~~ 123 (124) T 1dc7_A 83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 (124) T ss_dssp CSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 98999999999986998078397999999999999999844 No 66 >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Probab=99.86 E-value=3.3e-22 Score=159.01 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=106.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC Q ss_conf 68970989999999999997898-8999828589999998289967999900789662179998631013---3210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~ 77 (223) ||||||++..++.+...|+..|| .|..+.++..+.......+||++++|+.| |+++|+++++++|+. +++|||+ T Consensus 7 ILiVDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dliilD~~m--P~~dG~el~~~ir~~~~~~~~piI~ 84 (128) T 1jbe_A 7 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM--PNMDGLELLKTIRAXXAMSALPVLM 84 (128) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCC--SSSCHHHHHHHHHC--CCTTCCEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCEEE T ss_conf 99996989999999999998799689998999999999762899999996999--9999899999999756779993899 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 244321000011122201000102333332100000111222 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) +|++++.++..+++++||++|+.|||++++|..+++.+++|. T Consensus 85 lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128) T 1jbe_A 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128) T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC T ss_conf 989899999999998799899989899999999999999874 No 67 >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Probab=99.86 E-value=4.3e-23 Score=164.58 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=111.1 Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 968970989999999999997898899982858999999828996799990078966217999863101-3321000024 Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) .|||||||+.+++.+...|+..||.|..+.+++++........|+++++|+++++++++|+..+.+++. .+++|||++| T Consensus 8 ~VLIVDDd~~~r~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~~pvi~lt 87 (136) T 3kto_A 8 IIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMA 87 (136) T ss_dssp EEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEE T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEE T ss_conf 79999799999999999999879999998999999999984799889999368647884089999997502688679997 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 432100001112220100010233333210000011122222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +.++.+.+++++++||+|||+|||++++|..+|+..+++.+. T Consensus 88 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~re 129 (136) T 3kto_A 88 SSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136) T ss_dssp SSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC- T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 059999999999759948998989999999999999998479 No 68 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=99.86 E-value=3.5e-22 Score=158.80 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=106.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 68970989999999999997898899-982858999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) ||||||++.+++.+...|++.|+.+. .+.+++++.......+||++++|+.| |+++|+++++.+|+ .+++|||++| T Consensus 4 vLIvDD~~~~r~~l~~~L~~~~~~vv~~a~~g~~al~~~~~~~pDlvilD~~m--P~~~G~e~~~~lr~~~~~~~iivlS 81 (134) T 3f6c_A 4 AIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIIIVS 81 (134) T ss_dssp EEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 99996989999999999986899899998999999999872699999995999--9998999999999529998389996 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 43210000111222010001023333321000001112222222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~ 123 (223) ++++.+...+++++||++|+.||+++++|..+|++++++....+ T Consensus 82 ~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~~~~~ 125 (134) T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 125 (134) T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCC T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC T ss_conf 78999999999987998999798999999999999987993588 No 69 >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A* Probab=99.86 E-value=4.1e-22 Score=158.42 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=106.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101-33210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~ 80 (223) |||||||+.++..+...|+..||.|..+.++.++..+.....||++++|+.| |++||+++++.+|+ .+++|||++|+ T Consensus 3 ILiVDDd~~~~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlVllDl~m--P~~dGlell~~lr~~~p~~pVIvlTg 80 (387) T 1ny5_A 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLL--PDVNGLEILKWIKERSPETEVIVITG 80 (387) T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHHCTTSEEEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCEEEEEC T ss_conf 9999488999999999999779999998999999999861899889995999--99999999999984499982899505 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 3210000111222010001023333321000001112 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) +++.+..++++++||+||+.||+++++|...++..++ T Consensus 81 ~~~~~~a~~A~~~GA~dyl~KP~~~~~L~~~i~~a~~ 117 (387) T 1ny5_A 81 HGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387) T ss_dssp TTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 5413435444414765312587202567778876677 No 70 >3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Probab=99.86 E-value=3.2e-22 Score=159.06 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=102.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC---EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEEC Q ss_conf 68970989999999999997898---899982858999999828996799990078966217999863101-33210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV---SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~---~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~ 77 (223) |||||||+.+++.+...|+..|+ .|..+.++.++..+....+||++++|+. ||++||+++++.+|+ .+++|||| T Consensus 5 ILiVDD~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~~~pdlillDi~--MP~~dG~el~~~i~~~~p~~~iI~ 82 (141) T 3cu5_A 5 ILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCSVIF 82 (141) T ss_dssp EEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 999909999999999999965998459989799999999998679998997368--999999999999997587993999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 24432100001112220100010233333210000011122 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +|++++.+...+++++||+|||.|||++++|..+|+..+++ T Consensus 83 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 123 (141) T 3cu5_A 83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141) T ss_dssp ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 97879999999999869998997989999999999999999 No 71 >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Probab=99.86 E-value=4.6e-22 Score=158.08 Aligned_cols=116 Identities=11% Similarity=0.158 Sum_probs=102.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHC----------CCCEEEEEEECCCCCCHHHHHHHHHHC Q ss_conf 68970989999999999997898--899982858999999828----------996799990078966217999863101 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSA----------REDVSAIEAFLIGKGEKVLELPRIIRA 69 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~----------~~d~~iid~~l~~~~~~g~~l~~~lr~ 69 (223) |||||||+..+..+...|+..|+ .|..+.+++++..+.... .||++++|+ .||+++|+++++++|+ T Consensus 9 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~--~mP~~dG~el~~~ir~ 86 (149) T 1k66_A 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDL--NLPGTDGREVLQEIKQ 86 (149) T ss_dssp EEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECS--CCSSSCHHHHHHHHTT T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC--CCCCCCHHHHHHHHHH T ss_conf 99998999999999999998699727999899999999998501111112268999899808--8999985899999985 Q ss_pred CC---CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 33---210000244321000011122201000102333332100000111222 Q gi|254780526|r 70 HS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 70 ~~---~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) .+ ++|||++|+.++.+++.+++++||++|++||+++++|..+|+.++|+. T Consensus 87 ~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 139 (149) T 1k66_A 87 DEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149) T ss_dssp STTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 86669995899978999999999998799799979899999999999999998 No 72 >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Probab=99.86 E-value=7.5e-22 Score=156.74 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=104.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) ||||||++.+++.+...|+..||.|..+.+++++.......+||++++|+.| |+++|+++++.+|+. .++|||++ T Consensus 9 ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~~~eAl~~l~~~~~dlvilD~~m--P~~dG~~l~~~ir~~~~~~~~pii~l 86 (140) T 3grc_A 9 ILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL--PDQDGVSLIRALRRDSRTRDLAIVVV 86 (140) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC--SSSCHHHHHHHHHTSGGGTTCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999699999999999999879999998999999999971899899853668--99978999999984725699978999 Q ss_pred CCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 4432100-00111222010001023333321000001112222 Q gi|254780526|r 79 SDYPSLQ-TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 79 t~~~~~~-~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) |+.+.+. ...+++++||+|||.|||++++|+++|+..+++.. T Consensus 87 t~~~~~~~~~~~a~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 129 (140) T 3grc_A 87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140) T ss_dssp CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC T ss_pred ECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 6678758999999977998899898999999999999986077 No 73 >2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99} Probab=99.86 E-value=2.3e-22 Score=159.95 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=88.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 11222222222222222222233212421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ...+.+.+.+|..+++++++|+.+.||++||.||.+|+.|+|++|||++|++.|||. +..++.++|++||+|||+||+. T Consensus 17 e~~~~~~~~lD~~~~~v~~~~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkl~~ 95 (115) T 2k4j_A 17 EPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESI-NPESSNKSIDVIIGRLRSKIEK 95 (115) T ss_dssp CCEEETTEEEETTTTEEEETTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCS-SCTTCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHH T ss_conf 777688799987779999999997279999999999985799378699999997167-8677832099999999998531 Q ss_pred CC-CCCCEEEECCCCEEECC Q ss_conf 56-77715778686303138 Q gi|254780526|r 204 KL-GFDPVDSKRFLGYSIDW 222 (223) Q Consensus 204 ~~-~~~~I~tvrg~GY~l~~ 222 (223) .+ .+.+|+||||.||+|+. T Consensus 96 ~~~~~~~I~Tvrg~GY~le~ 115 (115) T 2k4j_A 96 NPKQPQYIISVRGIGYKLEY 115 (115) T ss_dssp SSCCCSSCEEETTTEEECCC T ss_pred CCCCCCEEEEECCEEEEEEC T ss_conf 58999869997897688859 No 74 >2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1 Probab=99.86 E-value=1.2e-21 Score=155.51 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=97.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHH-HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC Q ss_conf 6897098999999999999789889998285899999-98289967999900789662179998631013-321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l-~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt 79 (223) |||||||+.++..+...|+..||.|..+.++..+... .....||++++|+.| |++||+++|+++|+. +++||||+| T Consensus 18 ILvVDDd~~~~~~l~~~L~~~G~~v~~~~~g~~al~~l~~~~~~DlvilD~~l--P~~dG~~l~~~ir~~~~~~piI~lt 95 (138) T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDLSIFSLLDIVKEQTKQPSVLILT 95 (138) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTSCHHHHHHHHTTSSSCCEEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 99996999999999999998599799809999999999836999889985888--9988899999999709999689998 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 4321000011122201000102333332100000111222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) ++++ +..++++.|| ||+.|||+++||.++|+...++. T Consensus 96 ~~~~--~~~~~~~~ga-dyL~KP~~~~eL~a~v~~~~~~~ 132 (138) T 2b4a_A 96 TGRH--ELIESSEHNL-SYLQKPFAISELRAAIDYHKPSM 132 (138) T ss_dssp SCC----CCCCSSSCE-EEEESSCCHHHHHHHHHHTCCC- T ss_pred CCHH--HHHHHHHCCC-CEEECCCCHHHHHHHHHHHCCCC T ss_conf 9817--9999853699-88989999999999999856114 No 75 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=99.85 E-value=6.3e-22 Score=157.20 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=103.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEE Q ss_conf 68970989999999999997898--8999828589999998289967999900789662179998631013---321000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII 76 (223) ||+|||++..+..+...|+..|+ .+..+.+++++.......+||++++|+. ||+++|+++++++|+. .++||| T Consensus 8 ILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~--mP~~~G~el~~~ir~~~~~~~iPiI 85 (144) T 3kht_A 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQHTPIV 85 (144) T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTTCCEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCEE T ss_conf 99995899999999999996899829999899999999997179999998699--9999999999999837878999189 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCC Q ss_conf 0244321000011122201000102333-332100000111222 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~-~~eL~ari~a~lRr~ 119 (223) ++|+.++.++..+++++||++|+.||++ ..||.++|+++++|. T Consensus 86 ~lS~~~~~~~~~~a~~~Ga~~~l~KP~~~~~eL~~~i~~~l~~~ 129 (144) T 3kht_A 86 ILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144) T ss_dssp EEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 99888999999999986999999699999999999999999986 No 76 >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Probab=99.85 E-value=9.2e-22 Score=156.20 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=101.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC-CCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 689709899999999999978988999828589999998289-96799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~-~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) |||||||+.+++.+...|+ .||.|.++.++.++........ +|++++|+.| |+++|+++++.+|+ .+++|||++| T Consensus 7 ILiVDDd~~~~~~l~~~L~-~~~~v~~a~~g~eAl~~l~~~~~~dlvi~D~~m--P~~~G~ell~~ir~~~~~~~vI~lt 83 (151) T 3kcn_A 7 ILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRM--PGMEGTEVIQKARLISPNSVYLMLT 83 (151) T ss_dssp EEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCCSEEEEESCC--SSSCHHHHHHHHHHHCSSCEEEEEE T ss_pred EEEEECCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 9999499999999999997-799899988999999999856997099983898--8987089999999868999689998 Q ss_pred CCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 432100001112220-1000102333332100000111222 Q gi|254780526|r 80 DYPSLQTTLDFFDSG-VDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 80 ~~~~~~~~i~~l~~G-Addyl~KP~~~~eL~ari~a~lRr~ 119 (223) +..+.+..+++++.| |+||+.|||++++|.++|++.+++. T Consensus 84 ~~~d~~~~~~a~~~G~a~dyl~KP~~~~~L~~~v~~~l~~~ 124 (151) T 3kcn_A 84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151) T ss_dssp CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHH T ss_conf 25999999999967898737869999999999999999999 No 77 >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Probab=99.85 E-value=1e-21 Score=155.84 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=101.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEE Q ss_conf 689709899999999999978988-999828589999-9982899679999007896621799986310133---21000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII 76 (223) ||||||++.+++.++..|+..||. |..+.++.++.. +....+||++++|+. ||+++|+++++.+|+.. ++||| T Consensus 8 ILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~dliilD~~--mP~~~G~el~~~ir~~~~~~~~pii 85 (129) T 3h1g_A 8 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKEIPII 85 (129) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTTCCEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECC--CCCCCCHHHHHHHHHCCCCCCCEEE T ss_conf 99992889999999999998699699998999999999973799989962215--8888879999999837567999399 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 0244321000011122201000102333332100000111222 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) ++|++++.+++.+++++||++||.|||++++|.++|++++|+. T Consensus 86 ~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~~L~~~ 128 (129) T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129) T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 9976799999999998699899989899999999999997579 No 78 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=99.85 E-value=1.3e-21 Score=155.26 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=105.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCEE Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-----321000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-----SQVPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-----~~~pII 76 (223) ||||||++..+..+...|+..||.|..+.+++++........||++++|+.| |+++|+++++.+|+. ..+||| T Consensus 17 ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~m--p~~~G~el~~~ir~~~~~~~~~~pii 94 (143) T 3m6m_D 17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHM--PGMNGLDMLKQLRVMQASGMRYTPVV 94 (143) T ss_dssp EEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHHHHTTCCCCCEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCEEE T ss_conf 9999588999999999999879999998999999999752899999983888--99988999999986284335899399 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 0244321000011122201000102333332100000111222 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) ++|++++.++..+++++||++|+.|||+.++|..+++.+.++. T Consensus 95 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~l~~~~ 137 (143) T 3m6m_D 95 VLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143) T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--- T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC T ss_conf 9978899999999998699889979899999999999999824 No 79 >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Probab=99.85 E-value=1.6e-21 Score=154.69 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=104.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCC-C-EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CC-CCEEC Q ss_conf 6897098999999999999789-8-8999828589999998289967999900789662179998631013-32-10000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-V-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQ-VPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~-~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~-~pII~ 77 (223) |||||||+.+++.+...|+..| + .|..+.+++++..+....+||++++|+.| |++||+++|+++|+. +. .||++ T Consensus 5 vLivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~m--P~~dG~el~~~ir~~~~~~~~ii~ 82 (130) T 1dz3_A 5 VCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIM--PHLDGLAVLERIRAGFEHQPNVIM 82 (130) T ss_dssp EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHHHCSSCCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCEEEE T ss_conf 999979999999999999858993799998999999999985599999982899--999889999999855999997999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 24432100001112220100010233333210000011122222 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +|++++.+...+++++||++|+.|||++++|..+|+.++++..+ T Consensus 83 ~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~p 126 (130) T 1dz3_A 83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTTP 126 (130) T ss_dssp EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-- T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC T ss_conf 97899999999999869979997999999999999999823772 No 80 >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Probab=99.85 E-value=1.5e-21 Score=154.89 Aligned_cols=114 Identities=10% Similarity=0.105 Sum_probs=99.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHC-------CCCEEEEEEECCCCCCHHHHHHHHHHCCC- Q ss_conf 68970989999999999997898--899982858999999828-------99679999007896621799986310133- Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHS- 71 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~-------~~d~~iid~~l~~~~~~g~~l~~~lr~~~- 71 (223) |||||||+..++.+...|+..|+ .+.++.+++++....... .||++++|+. ||+++|+++++++|+.+ T Consensus 11 ILiVdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~--mP~~~G~el~~~ir~~~~ 88 (149) T 1i3c_A 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIKQNPD 88 (149) T ss_dssp EEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHHHCTT T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECC--CCCCCHHHHHHHHHHCCC T ss_conf 999979999999999999976998479998999999999985002212689888998489--999864999999985804 Q ss_pred --CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf --2100002443210000111222010001023333321000001112 Q gi|254780526|r 72 --QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 72 --~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) ++||||+|+.++.+++.+++++||++||+||++.++|..+|+++++ T Consensus 89 ~~~iPvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~ 136 (149) T 1i3c_A 89 LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149) T ss_dssp TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 479988999568999999999987998999798999999999999999 No 81 >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Probab=99.85 E-value=1.5e-21 Score=154.77 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=99.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHC-------CCCEEEEEEECCCCCCHHHHHHHHHHCCC- Q ss_conf 6897098999999999999789--8899982858999999828-------99679999007896621799986310133- Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHS- 71 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~l~~~~-------~~d~~iid~~l~~~~~~g~~l~~~lr~~~- 71 (223) |||||||+..+..+...|+..| +.|..+.+++++....... .||++++|+ .||++||+++++++|+.+ T Consensus 5 ILiVdDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdliilD~--~mP~~dG~el~~~ir~~~~ 82 (140) T 1k68_A 5 IFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXL--NLPKKDGREVLAEIKSDPT 82 (140) T ss_dssp EEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECS--SCSSSCHHHHHHHHHHSTT T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHCCC T ss_conf 99997999999999999996799818999899999999998624544047996899988--9999855999999983866 Q ss_pred --CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf --21000024432100001112220100010233333210000011122 Q gi|254780526|r 72 --QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 72 --~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) ++||||+|+.++.+++.+++++||++||.||+++++|.++|+++++. T Consensus 83 ~~~iPvi~ls~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~i~~~ 131 (140) T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140) T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 5899899995789999999999879989997989999999999999999 No 82 >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Probab=99.85 E-value=1.1e-21 Score=155.70 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=103.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC Q ss_conf 6897098999999999999789-8899-982858999999828996799990078966217999863101-332100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-VSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223) ||||||++.+|+.+...|+..| +.|. .+.++.++..+.....||++++|+.| |+++|+++++++|+ .+++|||++ T Consensus 6 ILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~m--P~~~G~e~~~~ir~~~~~~~vI~l 83 (133) T 3b2n_A 6 LIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM--PGMTGLEVLAEIRKKHLNIKVIIV 83 (133) T ss_dssp EEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHTTCSCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 999929999999999999868996999998999999999985699999995778--999889999999986899968999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |+.++.+...+++++||++|+.||+++++|...|+++++.. T Consensus 84 T~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g~ 124 (133) T 3b2n_A 84 TTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133) T ss_dssp ESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-- T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC T ss_conf 67899999999998799789979999999999999999718 No 83 >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Probab=99.84 E-value=8.9e-22 Score=156.28 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=104.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCC-CCHHHHHHHHHHCC---CCCCE Q ss_conf 6897098999999999999789-889998285899999982-899679999007896-62179998631013---32100 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGK-GEKVLELPRIIRAH---SQVPL 75 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~-~~~g~~l~~~lr~~---~~~pI 75 (223) ||||||++..|+.++..|+..| |.|..+.+++++..+... .+||++++|+.| | +++|+++++.+|+. +++|| T Consensus 7 ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~m--P~~~~g~~l~~~ir~~~~~~~~pi 84 (140) T 3lua_A 7 VLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF--PVEKEGLEVLSAIRNNSRTANTPV 84 (140) T ss_dssp EEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS--SSHHHHHHHHHHHHHSGGGTTCCE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCCCCCCE T ss_conf 999949999999999999867990899989999999999738998599986899--999988899998764424689988 Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 0024432100001112220100010233333210000011122222 Q gi|254780526|r 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) |++|+.++.++..+++++||+||+.|||++++|.++|++++|+.+. T Consensus 85 I~lT~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~i~~~L~~~~~ 130 (140) T 3lua_A 85 IIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140) T ss_dssp EEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--- T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 9982799999999999869989998989999999999999998899 No 84 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=99.84 E-value=1.3e-21 Score=155.16 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=104.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEEC Q ss_conf 689709899999999999978988-9998285899999982899679999007896621799986310133---210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~ 77 (223) ||||||++..+..+...|+..||. |..+.+++++..+....+||++++|+.| |++||+++++.+|+.+ ++|||+ T Consensus 9 ILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~~~~~~~dlii~D~~m--P~~dG~~l~~~ir~~~~~~~~pii~ 86 (129) T 1p6q_A 9 VLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNM--PKMDGLGLLQAVRANPATKKAAFII 86 (129) T ss_dssp EEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSS--CSSCHHHHHHHHTTCTTSTTCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEE T ss_conf 99995989999999999998799299998999999999971899899984588--9998799999998385668982999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 24432100001112220100010233333210000011122 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +|+.++.+...+++++||+||+.|||+.++|.++|++++.+ T Consensus 87 ls~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~vl~~ 127 (129) T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129) T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 98049999999999879988998989999999999999985 No 85 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Probab=99.84 E-value=2.8e-21 Score=153.15 Aligned_cols=116 Identities=21% Similarity=0.299 Sum_probs=103.2 Q ss_pred EEEECCCHHHHHHHHHHHHHC-CCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC Q ss_conf 689709899999999999978-98899-982858999999828996799990078966217999863101-332100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD-GVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~-g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223) ||||||++.+++.+...|+.. |+.+. .+.++.++..+.....||++++|+.| |+++|+++++.+|+ .+.+|||++ T Consensus 8 VLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDlvllDi~m--P~~~G~e~~~~ir~~~~~~~iivl 85 (153) T 3cz5_A 8 IMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHIRQWDGAARILIF 85 (153) T ss_dssp EEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHHHHHCTTCCEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 999929999999999999858991899998999999999754699689996457--998789999999985899968999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |++++.+...+++++||++||.||+++++|..+|+++++.. T Consensus 86 t~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~ 126 (153) T 3cz5_A 86 TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153) T ss_dssp ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC T ss_pred EEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 81489999999998699838968999999999999998499 No 86 >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170} Probab=99.84 E-value=4.1e-21 Score=152.10 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=96.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHH---------HCCCCEEEEEEECCCCCCHHHHHHHHHHCC Q ss_conf 689709899999999999978988--999828589999998---------289967999900789662179998631013 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQS---------SAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~---------~~~~d~~iid~~l~~~~~~g~~l~~~lr~~ 70 (223) |||||||+..++.+...|+..|+. |..+.++.++..... ..+||++++ |+.||++||+++++.+|+. T Consensus 7 ILiVDDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~dlIil--D~~mP~~dG~el~~~ir~~ 84 (152) T 3heb_A 7 IVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLL--DLNLPDMTGIDILKLVKEN 84 (152) T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEE--CSBCSSSBHHHHHHHHHHS T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCEEEE--ECCCCCCCHHHHHHHHHHC T ss_conf 99997999999999999997799638999788899999984320455665069998998--6899999889999999848 Q ss_pred C---CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 3---2100002443210000111222010001023333321000001112 Q gi|254780526|r 71 S---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 71 ~---~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) + .+|||++|+.++.+++.+++++||++||+||++.++|..+|+++.. T Consensus 85 ~~~~~iPvI~lTa~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~i~~l~~ 134 (152) T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152) T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 77799958999776999999999986998999798999999999999999 No 87 >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Probab=99.84 E-value=4.6e-21 Score=151.77 Aligned_cols=116 Identities=10% Similarity=0.180 Sum_probs=100.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHH-----CCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCC Q ss_conf 689709899999999999978988-9998285899999982-----89967999900789662179998631013--321 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKGEKVLELPRIIRAH--SQV 73 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~-----~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~ 73 (223) ||+|||++..++.+...|+..|+. |..+.+++++...... ..||++++|+. ||+++|+++++.+|+. .++ T Consensus 5 VLiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~--MP~~dG~~~~~~ir~~~~~~~ 82 (133) T 2r25_B 5 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGYTS 82 (133) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSCCCS T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCC T ss_conf 999969899999999999986994899989999999999874213689888997388--899889999999986489999 Q ss_pred CEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 0000244321000011122201000102333332100000111222 Q gi|254780526|r 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 74 pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |||++|++++.++..+++++||++||.|||+.++|...++.++... T Consensus 83 piI~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133) T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133) T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 2899974699999999998699889979899999999999999998 No 88 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Probab=99.83 E-value=3.9e-21 Score=152.27 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=102.2 Q ss_pred EEEECCCHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHHH-HCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEEC Q ss_conf 689709899999999999978--988999828589999998-28996799990078966217999863101-33210000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD--GVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG 77 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~l~~-~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~ 77 (223) ||||||++.+|+++...|+.. |+.|..+.++.++..... ...||++++|+.| |+++|+++++++|+ .+++|||+ T Consensus 6 VLIvDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~m--P~~~G~e~l~~ir~~~p~~~iiv 83 (154) T 2qsj_A 6 VLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL--PDAEAIDGLVRLKRFDPSNAVAL 83 (154) T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHHCTTSEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCCEEE T ss_conf 9999499999999999997289984999966899999999745999789980888--99888999999998788997999 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 244321000011122201000102333332100000111222 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) +|++++.+...+++++||++||.||+++++|...|+.+++.. T Consensus 84 lT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~ 125 (154) T 2qsj_A 84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154) T ss_dssp C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC T ss_pred EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 980289999999998599889979999999999999998799 No 89 >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Probab=99.83 E-value=5.7e-21 Score=151.21 Aligned_cols=116 Identities=11% Similarity=0.138 Sum_probs=99.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECC Q ss_conf 689709899999999999978988--9998285899999982899679999007896621799986310133-2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~l 78 (223) |||||||+.+++.+...|+..|+. |..+.++.++.......+||++++|+.| |++||+++++.+|+.+ .+|||++ T Consensus 12 vLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~m--P~~dG~el~~~ir~~~~~~~iI~~ 89 (143) T 2qv0_A 12 VIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPFIVFI 89 (143) T ss_dssp EEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 999949999999999999868992799997999999999986699989987888--889989999999954999808999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 4432100001112220100010233333210000011122222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) |+.++ ..+++++.||+|||.|||+.++|.++++.++++.+. T Consensus 90 t~~~e--~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~~ 130 (143) T 2qv0_A 90 TAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143) T ss_dssp ESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH T ss_pred ECCHH--HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 77889--999999859988997999999999999999999997 No 90 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Probab=99.83 E-value=7.5e-21 Score=150.45 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=103.3 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE--EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC Q ss_conf 689709899999999999978988--99982858999999828996799990078966217999863101-332100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223) ||||||++.+++.+...|+..|.. |..+.+++++..+.....||++++|+.| |+++|+++++.+|+ .+++|||++ T Consensus 18 VLIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDvvllDl~m--p~~~G~el~~~ir~~~~~~~vivl 95 (152) T 3eul_A 18 VVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVRSYELPTRVLLI 95 (152) T ss_dssp EEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCSCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 999949999999999999859895799998999999999984699999981899--998999999999975899859999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111222 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~ 119 (223) |++++.+...+++++||++||.||+++++|+..|+.+++.. T Consensus 96 S~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~aI~~~~~g~ 136 (152) T 3eul_A 96 SAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152) T ss_dssp ESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 68699999999998699899979999999999999998799 No 91 >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Probab=99.83 E-value=1.6e-20 Score=148.36 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=99.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) +||||||+..++.+...|+..||.|..+.+++++........||++++|+.| |+++|+++++.+|+. +++|||++ T Consensus 6 vLiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~m--P~~~G~el~~~lr~~~~~~~~pii~l 83 (127) T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDTSGLALVKQLRALPMEKTSKFVAV 83 (127) T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHSCCSSCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999578999999999999879999998999999999980899999862789--99845999999984767899949999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223) |+.++.+....+ ..|+|+||.|||++++|.++++++. T Consensus 84 t~~~~~~~~~~~-~~g~~~~L~KP~~~~~L~~~l~~l~ 120 (127) T 3i42_A 84 SGFAKNDLGKEA-CELFDFYLEKPIDIASLEPILQSIE 120 (127) T ss_dssp ECC-CTTCCHHH-HHHCSEEEESSCCHHHHHHHHHHHC T ss_pred ECCCCHHHHHHH-HHCCCEEEECCCCHHHHHHHHHHHC T ss_conf 788879999999-7178789979899999999999804 No 92 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=99.81 E-value=2e-20 Score=147.81 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=100.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC------CCCCE Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013------32100 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH------SQVPL 75 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~------~~~pI 75 (223) ||+|||++..+..+...|+..|+.|..+.+++++..+.. .+||++++|+.| |+++|+++++.+|+. +.+|| T Consensus 10 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~-~~~dlii~D~~m--P~~dG~e~~~~ir~~~~~~~~~~~~i 86 (136) T 1dcf_A 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDVCM--PGVENYQIALRIHEKFTKQRHQRPLL 86 (136) T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTCSEEEEECCS--STTTTTHHHHHHHHHHC-CCSCCCEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCEE T ss_conf 999939899999999999987999999899999998624-599899994568--99748999999998450126898869 Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 0024432100001112220100010233333210000011122 Q gi|254780526|r 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) |++|++.+.+++.+++++|+|+||.||++.++|...++.++++ T Consensus 87 i~~Ta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~ 129 (136) T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136) T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC T ss_conf 9996899999999999869998998989999999999999600 No 93 >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Probab=99.81 E-value=5e-20 Score=145.28 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=100.0 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC Q ss_conf 6897098999999999999789889998285899999982899679999007896621799986310133---2100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l 78 (223) |||||||+..++.+...|+..||.|..+.+++++........||++++|+.| |+++|+++|+.+|+.+ .+|||++ T Consensus 4 ILiVdd~~~~~~~~~~~L~~~g~~v~~a~~~~~al~~l~~~~pdlvllD~~l--p~~~G~~l~~~lr~~~~~~~~pii~~ 81 (119) T 2j48_A 4 ILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQADPHPPLVLF 81 (119) T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCCSSCCCEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999799999999999999889999998999999999981799989996379--99999999999982888898649999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 443210000111222010001023333321000001112 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) |+.++ ..+++++|||||+.|||++++|.+++++++. T Consensus 82 t~~~~---~~~~~~~ga~~~l~KP~~~~~L~~~v~~ll~ 117 (119) T 2j48_A 82 LGEPP---VDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119) T ss_dssp ESSCC---SSHHHHHHCSEECSSCSTTHHHHHHHHTTCC T ss_pred ECCHH---HHHHHHCCCCEEEECCCCHHHHHHHHHHHCC T ss_conf 77188---9999987998999898999999999998839 No 94 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=99.81 E-value=4.4e-20 Score=145.59 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=98.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC------CCCCE Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013------32100 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH------SQVPL 75 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~------~~~pI 75 (223) ||||||++..+..+...|+..||.|..+.++.++........||++++|+.| |++||+++++.+|+. +.+|| T Consensus 13 VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~~~~~ipi 90 (140) T 3c97_A 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQM--PVMDGLEAVSEIRNYERTHNTKRASI 90 (140) T ss_dssp EEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTC--CSSCHHHHHHHHHHHHHHHTCCCCCC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCCCCEE T ss_conf 9999398999999999999879999998999999999870799889994799--99899999999983521037899839 Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 0024432100001112220100010233333210000011122 Q gi|254780526|r 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 (223) Q Consensus 76 I~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr 118 (223) +++|+.+..+++ ..+|+|+|+.|||++++|...|++++.+ T Consensus 91 i~~ta~~~~~~~---~~ag~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140) T 3c97_A 91 IAITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140) T ss_dssp EEEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC- T ss_pred EEEECCCCHHHH---HHCCCCEEEECCCCHHHHHHHHHHHHHC T ss_conf 999899629999---8579988998989999999999999745 No 95 >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} Probab=99.81 E-value=1.7e-20 Score=148.26 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=97.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223) |||||||+..++.+...|+..|+.|.++++.++ ........||++++|+ .||++||+++++.+|+. +++|||++|+ T Consensus 6 ILIVDDd~~~~~~l~~~L~~~g~~v~a~~~~ea-l~~l~~~~~dlillD~--~mP~~dG~el~~~lr~~~~~~~iiils~ 82 (135) T 3eqz_A 6 VFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRA-FLTLSLNKQDIIILDL--MMPDMDGIEVIRHLAEHKSPASLILISG 82 (135) T ss_dssp EEEECSCHHHHHHHHHHHTTTCSCEEEESCHHH-HTTSCCCTTEEEEEEC--CTTTTHHHHHHHHHHHTTCCCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEECCHHHH-HHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHCCCCCCEEEEEC T ss_conf 999929999999999999978998999178999-9998658999999859--9999989999999995299997999983 Q ss_pred CCC-----CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 321-----00001112220100010233333210000011122222 Q gi|254780526|r 81 YPS-----LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 81 ~~~-----~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) +++ .+.+.+++.+||+|||.|||++++|..++++++||... T Consensus 83 ~~~~~~~~~~~~~~~~~~g~~d~l~KP~~~~~L~~~l~~~~~r~a~ 128 (135) T 3eqz_A 83 YDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135) T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-- T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 5765440099999995599987997989999999999999989818 No 96 >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Probab=99.80 E-value=6.3e-20 Score=144.62 Aligned_cols=112 Identities=11% Similarity=0.087 Sum_probs=94.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHH------CCCCEEEEEEECCCCCCHHHHHHHHHHCCC-- Q ss_conf 6897098999999999999789--889998285899999982------899679999007896621799986310133-- Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSS------AREDVSAIEAFLIGKGEKVLELPRIIRAHS-- 71 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~l~~~------~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-- 71 (223) |||||||+..++.+...|++.| +.|..+.+++++..+... ..||++++|+ .||+++|+++++++|+.+ T Consensus 10 ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~--~mP~~~G~el~~~ir~~~~~ 87 (143) T 2qvg_A 10 ILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDI--NIPKMNGIEFLKELRDDSSF 87 (143) T ss_dssp EEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEET--TCTTSCHHHHHHHHTTSGGG T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCHHHHHHHHHCCCC T ss_conf 9999799999999999999769984999989999999999841233037987899648--78899727999999857777 Q ss_pred -CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf -21000024432100001112220100010233333210000011 Q gi|254780526|r 72 -QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 (223) Q Consensus 72 -~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~ 115 (223) ++|||++|+.++.+++.+++++||+|||.|||++++|+..+..+ T Consensus 88 ~~ipiI~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~~~ 132 (143) T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143) T ss_dssp TTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH T ss_conf 999199997889999999999879989998979999999999999 No 97 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=99.80 E-value=2e-19 Score=141.46 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=101.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 6897098999999999999789889998285899999982-8996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) |||||||+.+++.+...|+..||.|..+.+++++...... .++|++++|+.+| ++++|+++++.+|+ .+++|||++| T Consensus 8 ILiVDDd~~~~~~l~~~L~~~G~~v~~a~s~~eAl~~l~~~~~~dlvi~D~~~p-~~~~G~el~~~ir~~~~~~pii~~s 86 (132) T 2rdm_A 8 ILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFC-QPPDGWQVARVAREIDPNMPIVYIS 86 (132) T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCS-SSSCHHHHHHHHHHHCTTCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 999979999999999999987999999899999999998389987998730058-9999999999999749899689997 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 432100001112220100010233333210000011122222 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223) ++++.+...++++.|+ ||.|||++++|..+|+.++++.++ T Consensus 87 ~~~~~~~~~~~~~~~~--~L~KP~~~~~L~~~i~~~l~~r~G 126 (132) T 2rdm_A 87 GHAALEWASNGVPDSI--ILEKPFTSAQLITAVSQLLNAREG 126 (132) T ss_dssp SSCCTTHHHHSCTTCE--EEESSCCHHHHHHHHHHHHHTTC- T ss_pred CCCCHHHHHHHCCCCE--EEECCCCHHHHHHHHHHHHHHCCC T ss_conf 5699899997352890--898999999999999999998799 No 98 >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Probab=99.77 E-value=2.4e-19 Score=140.96 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=84.9 Q ss_pred EEEECCCHHHHHHHHHHHHHC-CCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC--CCEE Q ss_conf 689709899999999999978-988-999828589999-99828996799990078966217999863101332--1000 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD-GVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ--VPLI 76 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~-g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~--~pII 76 (223) ||||||++..|+.+...|+.. |+. |..+.+++++.. +....+||++++|+. ||++||+++++++|+.+. +|+| T Consensus 16 VLIVDD~~~~r~~l~~~L~~~~~~~vv~~A~~g~eAl~~l~~~~~~DliilD~~--MP~~dG~e~~~~ir~~~~~~i~ii 93 (145) T 3kyj_B 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIE--MPVMDGMEFLRHAKLKTRAKICML 93 (145) T ss_dssp EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTT--SCCCTTCHHHHHHHHHCCCEEC-C T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 999969899999999999859994699998999999999983699989998789--999999999999985699693999 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 0244321000011122201000102333332 Q gi|254780526|r 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 (223) Q Consensus 77 ~lt~~~~~~~~i~~l~~GAddyl~KP~~~~e 107 (223) ++|++++.++..+++++||+|||.|||+... T Consensus 94 ~~t~~~~~~~~~~a~~~Ga~~yl~KP~~~~~ 124 (145) T 3kyj_B 94 SSVAVSGSPHAARARELGADGVVAKPSGTVS 124 (145) T ss_dssp BSSCSTTSSHHHHHHHTTCSCCCBCCCSCC- T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCCHH T ss_conf 9960799899999998699899989998477 No 99 >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406} Probab=99.75 E-value=2.3e-18 Score=134.73 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=97.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHH-----CCCCEEEEEEECCCCCCHHHHHHHHHHCC---- Q ss_conf 68970989999999999997898--89998285899999982-----89967999900789662179998631013---- Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKGEKVLELPRIIRAH---- 70 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~-----~~~d~~iid~~l~~~~~~g~~l~~~lr~~---- 70 (223) |||||||+..+..+...|+..|+ .|..+.+++++...... ..||++++|+. ||++||+++++.+|+. T Consensus 12 ILiVDDd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~--MP~~dG~el~~~ir~~~~~~ 89 (146) T 3ilh_A 12 VLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQHFQPM 89 (146) T ss_dssp EEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHHCGGG T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCC T ss_conf 9999798999999999999779981899989999999999863102789999998489--89997599999998608512 Q ss_pred -CCCCEECCCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf -32100002443210000111-222010001023333321000001112222 Q gi|254780526|r 71 -SQVPLIGISDYPSLQTTLDF-FDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223) Q Consensus 71 -~~~pII~lt~~~~~~~~i~~-l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223) ..+||+++|+..+.++..++ ...|||+|++||++.++|..+++.++++.. T Consensus 90 ~~~~~viilts~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~g~ 141 (146) T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146) T ss_dssp TTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-- T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC T ss_conf 4887199997889989999999977998899798999999999999997147 No 100 >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Probab=99.75 E-value=3.8e-19 Score=139.73 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=97.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) ||+||||+..++.+...|+..||.|..+.++.++. ...||++++|+. ||+++|.++++.+++.+++|||++|++ T Consensus 15 vLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al----~~~~D~vl~D~~--mp~~~~~~~~~~~~~~~~~pvI~lt~~ 88 (196) T 1qo0_D 15 VLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DVPVDVVFTSIF--QNRHHDEIAALLAAGTPRTTLVALVEY 88 (196) T ss_dssp EEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SSCCSEEEEECC--SSTHHHHHHHHHHHSCTTCEEEEEECC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHC----CCCCCEEEEECC--CCCCCHHHHHHHHHCCCCCCEEEEECC T ss_conf 99995799999999999998699887169979984----889998998489--999859999999864999988998457 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 210000111222010001023333321000001112 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lR 117 (223) ++.+...+++++||+|||.|||++.+|..+++..+. T Consensus 89 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~~ 124 (196) T 1qo0_D 89 ESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196) T ss_dssp CSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 999999999985999865599998999999999999 No 101 >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Probab=99.74 E-value=4.2e-18 Score=133.15 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=90.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC Q ss_conf 68970989999999999997898--8999828589999998289967999900789662179998631013321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt 79 (223) ||||||++.+|+.+...|+..|+ .|..+.+++++..+....+||++++|+.| |++||+++++.+++....|+++++ T Consensus 6 VLIVDD~~~~R~~l~~~L~~~~~~~vV~~A~~g~eAl~~~~~~~pDvvilDi~M--P~mdGle~l~~i~~~~~~~ii~i~ 83 (349) T 1a2o_A 6 VLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEM--PRMDGLDFLEKLMRLRPMPVVMVS 83 (349) T ss_dssp EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCC--SSSCHHHHHHHHHHSSCCCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 999959899999999999858896999997999999999962799899997978--999989999998875899704899 Q ss_pred CCCC--CCCCCCCCCCCCEEEEECCCCC---------CCCCCCCCCCC Q ss_conf 4321--0000111222010001023333---------32100000111 Q gi|254780526|r 80 DYPS--LQTTLDFFDSGVDDVVNKPIHH---------REILARVAAIY 116 (223) Q Consensus 80 ~~~~--~~~~i~~l~~GAddyl~KP~~~---------~eL~ari~a~l 116 (223) ...+ .+...+++++||+||+.||+.. ++|..++++.. T Consensus 84 ~~~~~~~~~~~~Al~~GA~dyl~KP~~~~~~~~~~~~~~L~~kir~~~ 131 (349) T 1a2o_A 84 SLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA 131 (349) T ss_dssp CCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985044177788997598199977840245689999999888888767 No 102 >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} Probab=99.52 E-value=1.5e-15 Score=117.05 Aligned_cols=82 Identities=7% Similarity=0.049 Sum_probs=72.1 Q ss_pred EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 899982858999999828996799990078966217999863101-3321000024432100001112220100010233 Q gi|254780526|r 25 SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 (223) Q Consensus 25 ~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~ 103 (223) .|..|.++.++.......+||++++|+.| |++||+++++.+|+ .+++||||+|++++.++.++++++||+||+.||+ T Consensus 7 vv~~A~~g~eal~~~~~~~pdlv~~Di~m--P~~~G~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~y~~Kp~ 84 (237) T 3cwo_X 7 IVDDATNGREAVEKYKELKPDIVTMDITM--PEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA 84 (237) T ss_dssp EEECCCSSSTTHHHHHHHCCSCEEEECCS--TTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC T ss_conf 99985999999999984399999992878--9989999999999868998499998165132324788459876998985 Q ss_pred CCCCC Q ss_conf 33321 Q gi|254780526|r 104 HHREI 108 (223) Q Consensus 104 ~~~eL 108 (223) +.+++ T Consensus 85 ~~~~~ 89 (237) T 3cwo_X 85 AVENP 89 (237) T ss_dssp HHHCT T ss_pred CCCCH T ss_conf 63677 No 103 >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Probab=99.30 E-value=5.4e-13 Score=100.99 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=82.5 Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC Q ss_conf 68970989999999999997-89889998285899999982899679999007896621799986310133210000244 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~ 80 (223) ||||||++..+..+...|.+ .|+.+.++++.+++. ......||++++|+ .||+++|+++++.+++. ++||+++|+ T Consensus 7 ILvVdD~~~~~~~l~~~L~~~~~~~v~~~~~~ea~~-~~~~~~~dlillD~--~mP~~~g~e~~~~l~~~-~~pvi~~t~ 82 (259) T 3luf_A 7 ILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGAR-HCQGDEYVVALVDL--TLPDAPSGEAVKVLLER-GLPVVILTA 82 (259) T ss_dssp EEEECCCHHHHHHHHHHHHHHHCCEEEEESSTGGGT-TCCTTTEEEEEEES--CBTTBTTSHHHHHHHHT-TCCEEEEEC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHC-CCCCCCCCC T ss_conf 999979999999999999975998999938699999-96589998899978--88754023578987640-387423467 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 3210000111222010001023333321 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREI 108 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL 108 (223) ..+...+..++++|+++|+.||.....+ T Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 110 (259) T 3luf_A 83 DISEDKREAWLEAGVLDYVMKDSRHSLQ 110 (259) T ss_dssp C-CHHHHHHHHHTTCCEEEECSSHHHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 5457889999974886444543210000 No 104 >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Probab=98.64 E-value=1.9e-08 Score=72.32 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=67.1 Q ss_pred CCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCEEEECCC Q ss_conf 222222332124-21012344321128834008999986528765777661368899999986014567-7715778686 Q gi|254780526|r 139 DPEVQGEVFPLP-RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFL 216 (223) Q Consensus 139 ~~~~~g~~i~LT-~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~-~~~I~tvrg~ 216 (223) .+..+|+.+.++ +|-..||.+|+.++|++|+|++|.+.+|+..+.....+++.++|++|||.|+..+. ...+....+. T Consensus 20 ~v~~~g~~v~~~~~K~r~LLa~L~l~~g~~v~r~~L~~~LWpd~~~~~a~~~Lr~~l~~LRk~L~~~~~~~~~~~~~~~~ 99 (388) T 2ff4_A 20 QMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPP 99 (388) T ss_dssp EEEETTEECCCCSHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSS T ss_pred EEEECCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 99999998679975999999999968998681999998606999833588999999999999751036787259994287 Q ss_pred CEEECC Q ss_conf 303138 Q gi|254780526|r 217 GYSIDW 222 (223) Q Consensus 217 GY~l~~ 222 (223) ||.+.. T Consensus 100 ~y~l~~ 105 (388) T 2ff4_A 100 GYRLSI 105 (388) T ss_dssp EEEECC T ss_pred EEEECC T ss_conf 154225 No 105 >1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Probab=98.10 E-value=7.9e-06 Score=55.85 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=87.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223) +++++++...+..+...+....+.. .........+....++++++++. .+|..++.+.++..+.. ..+|++.+ T Consensus 155 ~~~~d~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~l~~~~~~dlvl~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (459) T 1w25_A 155 VLIVDDNERQAQRVAAELGVEHRPV--IESDPEKAKISAGGPVDLVIVNA--AAKNFDGLRFTAALRSEERTRQLPVLAM 230 (459) T ss_dssp EEEECSCHHHHHHHHHHHTTTSEEE--EECCHHHHHHHHHSSCSEEEEET--TCSSSCHHHHHHHHHTSGGGTTCCEEEE T ss_pred EEECCCCHHHHHHHHHHHHCCCEEE--EECCHHHHHHHCCCCCEEEEECH--HHHCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5530535999999999853156077--73686899983599960999613--6513314889888764100433112212 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 44321000011122201000102333332100000111 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223) ++.+.......+++.|+++|+.||+.+.++..++.... T Consensus 231 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 268 (459) T 1w25_A 231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQI 268 (459) T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHH T ss_conf 57530789999998155311045531001145555554 No 106 >3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Probab=97.43 E-value=9.7e-05 Score=48.97 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=49.4 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC Q ss_conf 21242101234432112883400899998652876577766136889999998601456777157786863 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~G 217 (223) -.||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+...-.+.+.-.+..| T Consensus 26 ~~LT~rE~evl~ll~~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~g 86 (95) T 3c57_A 26 SGLTDQERTLLGLLSE--G--LTNKQIADRM------FLAEKTVKNYVSRLLAKLGMERRTQAAVFATELK 86 (95) T ss_dssp -CCCHHHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCCCCC--------- T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 3049999999999990--7--9999998794------9789999999999999978999999999999939 No 107 >2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} Probab=97.27 E-value=0.00021 Score=46.92 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=44.6 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 321242101234432112883400899998652876577766136889999998601456777 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~ 208 (223) ...||++|.++|.++++ |+ |..||++.+ .++.+||+.|+.++++||+...-.. T Consensus 173 ~~~LT~RE~evL~l~a~--G~--t~~eIA~~L------~iS~~TV~~h~~~i~~KLgv~nr~q 225 (236) T 2q0o_A 173 KQMLSPREMLCLVWASK--GK--TASVTANLT------GINARTVQHYLDKARAKLDAESVPQ 225 (236) T ss_dssp GGSCCHHHHHHHHHHHT--TC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHTCSSHHH T ss_pred CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHH T ss_conf 34399879999999866--99--999999996------9999999999999999868999999 No 108 >1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A* Probab=97.20 E-value=0.00025 Score=46.42 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=45.7 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 23321242101234432112883400899998652876577766136889999998601456777 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~ 208 (223) .....||++|.++|.+++. | .|..||++.+ .++.+||+.|+.++++||+...-.. T Consensus 169 ~~~~~LT~RE~evL~~~a~--G--~s~~eIA~~L------~iS~~TV~~hl~~i~~KLg~~nr~q 223 (234) T 1l3l_A 169 EDAAWLDPKEATYLRWIAV--G--KTMEEIADVE------GVKYNSVRVKLREAMKRFDVRSKAH 223 (234) T ss_dssp ECCCCCCHHHHHHHHHHTT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCSSHHH T ss_pred CCCCCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHH T ss_conf 7777899899999999976--9--9999999996------9899999999999999868999999 No 109 >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Probab=97.19 E-value=0.00025 Score=46.36 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=45.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 2124210123443211288340089999865287657776613688999999860145677715 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I 210 (223) -.||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+...-.+.+ T Consensus 20 ~~LT~rE~~vl~lla~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Klgv~~r~elv 73 (82) T 1je8_A 20 NQLTPRERDILKLIAQ--G--LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSRVEAA 73 (82) T ss_dssp GGSCHHHHHHHHHHTT--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHTTCSSHHHHH T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 4199999999999992--8--9999999897------959999999999999983899999999 No 110 >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Probab=97.05 E-value=7.5e-05 Score=49.67 Aligned_cols=56 Identities=30% Similarity=0.349 Sum_probs=45.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 212421012344321128834008999986528765777661368899999986014567771577 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t 212 (223) -.||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+.......+.. T Consensus 10 ~~LT~rE~~vl~~l~~--G--~s~~eIA~~L------~iS~~TV~~h~~~i~~Kl~v~~r~~lv~~ 65 (74) T 1fse_A 10 PLLTKREREVFELLVQ--D--KTTKEIASEL------FISEKTVRNHISNAMQKLGVKGRSQAVVE 65 (74) T ss_dssp CCCCHHHHHHHHHHTT--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHTCSSHHHHHHH T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 9879999999999992--7--9999999997------98999999999999999589999999999 No 111 >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Probab=97.04 E-value=6.1e-05 Score=50.24 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=45.6 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 12421012344321128834008999986528765777661368899999986014567771577 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t 212 (223) .||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+.....+++.- T Consensus 16 ~LT~rE~~vl~~l~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~Klgv~~r~elv~~ 70 (79) T 1x3u_A 16 TLSERERQVLSAVVA--G--LPNKSIAYDL------DISPRTVEVHRANVMAKMKAKSLPHLVRM 70 (79) T ss_dssp HHCHHHHHHHHHHTT--T--CCHHHHHHHT------TSCHHHHHHHHHHHHHHTTCCSHHHHHHH T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 599999999999990--7--9999999997------98898999999999998089999999999 No 112 >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} Probab=97.00 E-value=0.00044 Score=44.83 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=72.6 Q ss_pred EEEECCCHH-----HH---HHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCC--CHHHHHHHHHHC- Q ss_conf 689709899-----99---99999999789889998285899999982-8996799990078966--217999863101- Q gi|254780526|r 2 FVLIDDRAL-----VK---DGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKG--EKVLELPRIIRA- 69 (223) Q Consensus 2 ILiVeDd~~-----~~---~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~--~~g~~l~~~lr~- 69 (223) +||||++.. .. ..|...+++.||.|..+.+.+++...... ...+.++++++.+.++ .+..++++.+|+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (755) T 2vyc_A 3 VLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHER 82 (755) T ss_dssp EEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 99991555576740116899999999867918998487899999997588876899970688853213499999999973 Q ss_pred CCCCCEECCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCC Q ss_conf 332100002443210-00011122201000102333332100-00011122 Q gi|254780526|r 70 HSQVPLIGISDYPSL-QTTLDFFDSGVDDVVNKPIHHREILA-RVAAIYRR 118 (223) Q Consensus 70 ~~~~pII~lt~~~~~-~~~i~~l~~GAddyl~KP~~~~eL~a-ri~a~lRr 118 (223) +..+||..++..... +..-...--..+.|+-.-=+..|+++ +|.+..+| T Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 133 (755) T 2vyc_A 83 QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755) T ss_dssp STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCHHHCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHH T ss_conf 889998999546530310789898641357761578789999999999999 No 113 >2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis} Probab=96.99 E-value=0.00012 Score=48.42 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=47.7 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 332124210123443211288340089999865287657776613688999999860145677715778 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tv 213 (223) +.-.||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+.....+.+... T Consensus 9 ~~~~Lt~rE~~vl~~~~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~Kl~v~~r~elv~~A 67 (73) T 2krf_A 9 EQDVLTPRECLILQEVEK--G--FTNQEIADAL------HLSKRSIEYSLTSIFNKLNVGSRTEAVLIA 67 (73) T ss_dssp SSSSSCHHHHHHHHHHHT--T--SCHHHHHHHH------TCCHHHHHHHHHHHHHHSCCSSSHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 878889999999999995--8--9999984161------888999999999999980999999999999 No 114 >3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} Probab=96.89 E-value=0.00013 Score=48.24 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=46.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 21242101234432112883400899998652876577766136889999998601456777157 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~ 211 (223) ..||++|.++|.+++. | .|..+|++.+ .++.+||+.|+.++++||+.....+++. T Consensus 196 ~~Ls~re~~il~~~~~--G--~~~~eia~~l------~is~~tv~~h~~~~~~kl~~~~~~~~~~ 250 (258) T 3clo_A 196 NILSEREKEILRCIRK--G--LSSKEIAATL------YISVNTVNRHRQNILEKLSVGNSIEACR 250 (258) T ss_dssp TSSCHHHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHTTCSSHHHHHH T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 9999899999999985--9--9999999894------9999999999999999858999999999 No 115 >1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Probab=96.89 E-value=0.0001 Score=48.86 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=45.7 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 212421012344321128834008999986528765777661368899999986014567771577 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~t 212 (223) -.||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+.....+++.- T Consensus 33 ~~LT~rE~~vl~ll~~--G--~s~~eIA~~l------~iS~~TV~~~~~~i~~KL~v~~~~elv~~ 88 (99) T 1p4w_A 33 KRLSPKESEVLRLFAE--G--FLVTEIAKKL------NRSIKTISSQKKSAMMKLGVDNDIALLNY 88 (99) T ss_dssp SSCCHHHHHHHHHHHH--T--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHTCSSHHHHHHH T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 9989999999999993--8--9999997772------99899999999999998099999999999 No 116 >2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Probab=96.79 E-value=0.00014 Score=47.93 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=44.3 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 124210123443211288340089999865287657776613688999999860145677715 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I 210 (223) .||++|.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+...-.+.+ T Consensus 29 ~LT~rE~evl~ll~~--G--~s~~eIA~~L------~iS~~TV~~~~~~i~~Kl~v~~r~elv 81 (91) T 2rnj_A 29 MLTEREMEILLLIAK--G--YSNQEIASAS------HITIKTVKTHVSNILSKLEVQDRTQAV 81 (91) T ss_dssp GCCSHHHHHHHHHHT--T--CCTTHHHHHH------TCCHHHHHHHHHHHHHHTTCCSSHHHH T ss_pred CCCHHHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 179999999999992--8--9999999997------889999999999999990999999999 No 117 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=96.45 E-value=0.0043 Score=38.60 Aligned_cols=19 Identities=5% Similarity=0.249 Sum_probs=13.1 Q ss_pred HHCCCCCCCHHHHHHHHHC Q ss_conf 2112883400899998652 Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIY 178 (223) Q Consensus 160 L~~~~g~~vsr~~l~~~iw 178 (223) +....+..++|.++...+. T Consensus 225 ~~~~~~~~~~r~~l~~~ll 243 (321) T 1bia_A 225 TLQEAGINLDRNTLAAMLI 243 (321) T ss_dssp CTTTTTCCCCHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHH T ss_conf 7876276547677999999 No 118 >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Probab=96.17 E-value=0.00072 Score=43.50 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=44.5 Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCE Q ss_conf 1012344321128834008999986528765777661368899999986014567771577868630 Q gi|254780526|r 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 (223) Q Consensus 152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY 218 (223) ||.++|.++++ | .|..+|++.+ .++.+||+.|++++++||+.....+.+.-.+..|+ T Consensus 2 RE~evl~ll~~--G--~s~~eIA~~l------~iS~~TV~~h~~~i~~Klgv~~r~elv~~a~~~gl 58 (61) T 2jpc_A 2 RERQVLKLIDE--G--YTNHGISEKL------HISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 58 (61) T ss_dssp HHHHHHHHHHT--S--CCSHHHHHHT------CSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCC T ss_pred HHHHHHHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC T ss_conf 79999999982--7--9999999896------98999999999999988199999999999999649 No 119 >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=94.72 E-value=0.048 Score=31.99 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=70.1 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--CCCEECCCC Q ss_conf 0989999999999997898899982---85899999982899679999007896621799986310133--210000244 Q gi|254780526|r 6 DDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGISD 80 (223) Q Consensus 6 eDd~~~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~--~~pII~lt~ 80 (223) |.+..=...+...|+..||.|.-.. ..+..........+|++.+=..+.......-++.+.+|+.. ++||+ +.+ T Consensus 29 D~HdiG~~~va~~l~~~G~eV~~LG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~L~~~g~~~i~i~-vGG 107 (161) T 2yxb_A 29 DGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV-LGG 107 (161) T ss_dssp SSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEE T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE-EEC T ss_conf 6247889999999997898899789778999999999866998999855766448999999999997599998799-966 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 321000011122201000102333332100000111 Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223) Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223) .-..++.-...+.|+|.+...-.+..+.+..++.++ T Consensus 108 ~~~~~d~~~l~~~Gvd~vF~pgt~~~e~v~~l~~~~ 143 (161) T 2yxb_A 108 TIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161) T ss_dssp CCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH T ss_conf 879888999997798888499899999999999999 No 120 >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} Probab=93.63 E-value=0.12 Score=29.51 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=29.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCC--CEEEC Q ss_conf 3443211288340089999865287657776613688999999860145677715778686--30313 Q gi|254780526|r 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL--GYSID 221 (223) Q Consensus 156 lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l~ 221 (223) +|.+|+.+++..+|..+|++.+ .++.. +++++-++|... ..|.+++|. ||+|. T Consensus 17 ~L~~La~~~~~~~ss~~IA~~~------~i~~~----~l~kil~~L~~a---Glv~s~rG~~GGy~La 71 (162) T 3k69_A 17 SILYLDAHRDSKVASRELAQSL------HLNPV----MIRNILSVLHKH---GYLTGTVGKNGGYQLD 71 (162) T ss_dssp HHHHHHTTTTSCBCHHHHHHHH------TSCGG----GTHHHHHHHHHT---TSSEEECSTTCEEECC T ss_pred HHHHHHHCCCCCCCHHHHHHHH------CCCHH----HHHHHHHHHHHC---CCEEECCCCCCCCCCC T ss_conf 9999983899866699999888------90999----999999999647---9678348899974002 No 121 >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Probab=92.65 E-value=0.5 Score=25.58 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=63.1 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEE--E-CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCCC Q ss_conf 098999999999999789889998--2-8589999998289967999900789662179998631013-32100002443 Q gi|254780526|r 6 DDRALVKDGYIALFGDDGVSLEGF--N-SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY 81 (223) Q Consensus 6 eDd~~~~~~l~~~L~~~g~~v~~~--~-~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~~ 81 (223) |-+..=...+...|+..||.|.-. + ..+..........||++.+=..+...-..--++++.+|+. +++||++=.+- T Consensus 134 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~i~~~v~~~~~d~vglS~~l~~~l~~~~~~i~~l~~~~~~~~iivGGa~ 213 (258) T 2i2x_B 134 DVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGA 213 (258) T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTT T ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 80178999999999987993897899899999999999829998999415567679999999999974999948988987 Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCC Q ss_conf 2100001112220100010233333210 Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREIL 109 (223) Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ 109 (223) -+.+ -+=+.|||.|-.-+++.-++. T Consensus 214 ~~~~---~a~~~gaD~~a~da~~av~~a 238 (258) T 2i2x_B 214 VNQD---FVSQFALGVYGEEAADAPKIA 238 (258) T ss_dssp CCHH---HHHTSTTEEECSSTTHHHHHH T ss_pred CCHH---HHHHHCCCEECCCHHHHHHHH T ss_conf 9999---999829884767999999999 No 122 >1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 Probab=92.12 E-value=0.17 Score=28.61 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=6.6 Q ss_pred HHHCCCCCCCHHHHHHHH Q ss_conf 321128834008999986 Q gi|254780526|r 159 YLMANRGKRVAKTQIFSA 176 (223) Q Consensus 159 ~L~~~~g~~vsr~~l~~~ 176 (223) +|+.++++.+|-++|++. T Consensus 22 ~La~~~~~~~s~~~ia~~ 39 (149) T 1ylf_A 22 ILKNNPSSLCTSDYMAES 39 (149) T ss_dssp HHHHSCGGGCCHHHHHHH T ss_pred HHHHCCCCCCCHHHHHHH T ss_conf 999689986669999987 No 123 >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Probab=90.30 E-value=0.2 Score=28.10 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=59.4 Q ss_pred HHHHHHCCCEEEEEECHHH--HHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC Q ss_conf 9999978988999828589--999998289967999900789---66217999863101332100002443210000111 Q gi|254780526|r 16 IALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 (223) Q Consensus 16 ~~~L~~~g~~v~~~~~~~~--~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~ 90 (223) +..|-..||.|-.+.+.+. +..+......- ++-+.-|- .|...-..++.++++.++|||+=.+-....+...+ T Consensus 119 ae~Lv~eGF~VlpY~~~D~v~akrLed~Gc~a--vMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGIG~pSdAa~A 196 (264) T 1xm3_A 119 SEQLLEEGFIVLPYTSDDVVLARKLEELGVHA--IMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYA 196 (264) T ss_dssp HHHHHHTTCCEEEEECSCHHHHHHHHHHTCSC--BEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHH T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHCCCEE--EEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH T ss_conf 99999789879996078989999999769919--9851340136877679899999996689888984798988899999 Q ss_pred CCCCCEEEEECC Q ss_conf 222010001023 Q gi|254780526|r 91 FDSGVDDVVNKP 102 (223) Q Consensus 91 l~~GAddyl~KP 102 (223) +|.|+|..|.-. T Consensus 197 MElG~DaVLvNT 208 (264) T 1xm3_A 197 MELGADGVLLNT 208 (264) T ss_dssp HHTTCSEEEESH T ss_pred HHCCCCEEEECH T ss_conf 974588998554 No 124 >1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} Probab=90.27 E-value=0.35 Score=26.61 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECCCCCCCC Q ss_conf 99999999997898899982---8589999998289967999900789662179998631013---32100002443210 Q gi|254780526|r 11 VKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSL 84 (223) Q Consensus 11 ~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~lt~~~~~ 84 (223) =...+...|+..||.|.-.. ..+.........+||++.+=..++..-.+.-++++.+|+. +++||++=.+--+ T Consensus 104 G~~~va~~l~~~Gw~V~~LG~~vp~e~l~~~~~~~~~~~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~- 182 (210) T 1y80_A 104 GKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS- 182 (210) T ss_dssp HHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC- T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC- T ss_conf 9999999999889848856789999999999985299999998435677999999999999848999996999892089- Q ss_pred CCCCCCCCCCCEEEEEC Q ss_conf 00011122201000102 Q gi|254780526|r 85 QTTLDFFDSGVDDVVNK 101 (223) Q Consensus 85 ~~~i~~l~~GAddyl~K 101 (223) ++ .+-+.|||.|-.- T Consensus 183 ~~--~a~~~GaD~~a~d 197 (210) T 1y80_A 183 QD--FADEIGADGYAPD 197 (210) T ss_dssp HH--HHHHHTCSEECSS T ss_pred HH--HHHHHCCCEEECC T ss_conf 99--9999399889789 No 125 >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Probab=89.89 E-value=0.56 Score=25.31 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=39.2 Q ss_pred CCCCCC-C--HHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCC--CEEE Q ss_conf 212421-0--1234432112-88340089999865287657776613688999999860145677715778686--3031 Q gi|254780526|r 147 FPLPRR-E--RRILEYLMAN-RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL--GYSI 220 (223) Q Consensus 147 i~LT~~-E--~~lL~~L~~~-~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~--GY~l 220 (223) .+||.+ + ..+|-+|+.+ .++++|-.+|++.. .++. .++.++-++|... .+|++.||. ||+| T Consensus 20 Mkls~k~~YAlr~L~~LA~~~~~~~vs~~eIAe~~------~ip~----~~L~kIl~~L~ka---Glv~S~rG~~GGy~L 86 (159) T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDK------NLSE----HYLEQLIGPLRNA---GIVKSIRGAHGGYVL 86 (159) T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHH------TCCH----HHHHHHHHHHHHT---TSEEEECSTTCEEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHH------CCCH----HHHHHHHHHHHCC---CEEEECCCCCCCCEE T ss_conf 87876586999999999808899819599999878------9099----9999999998327---938836888888545 Q ss_pred CC Q ss_conf 38 Q gi|254780526|r 221 DW 222 (223) Q Consensus 221 ~~ 222 (223) .. T Consensus 87 ak 88 (159) T 3lwf_A 87 NG 88 (159) T ss_dssp CS T ss_pred CC T ss_conf 56 No 126 >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39 Probab=89.50 E-value=0.34 Score=26.64 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=40.6 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 33212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +...||..|.+|+.+|-.+ |.++|-.+|.+.+-. +...+.+||.+.+.||.+| T Consensus 3 k~~~L~~~E~~IM~ilW~~-~~~~t~~eI~~~l~~--~~~~~~sTV~t~L~rL~~K 55 (138) T 2g9w_A 3 KLTRLGDLERAVMDHLWSR-TEPQTVRQVHEALSA--RRDLAYTTVMAVLQRLAKK 55 (138) T ss_dssp CGGGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTT--TCCCCHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHC T ss_conf 6687889999999999848-999279999998710--4799487999999999977 No 127 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=89.18 E-value=0.65 Score=24.86 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=62.6 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEE---ECHHHHHHHHHHCCCCEEEEEEECCCCCCHHH-HHHHHHHCC--CCCCEECCC Q ss_conf 098999999999999789889998---28589999998289967999900789662179-998631013--321000024 Q gi|254780526|r 6 DDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-ELPRIIRAH--SQVPLIGIS 79 (223) Q Consensus 6 eDd~~~~~~l~~~L~~~g~~v~~~---~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~-~l~~~lr~~--~~~pII~lt 79 (223) |-+..=...+...|+..||.|.-. ...+..........+|++.+=..+.. ....+ ++.+.+|+. .++||++=. T Consensus 14 D~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~iS~~~~~-~~~~~~~~i~~L~~~~~~~v~iivGG 92 (137) T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ-GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137) T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST-HHHHHTTHHHHHHHTTCTTCEEEEEE T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 74589999999999987987997786669999999999839987887611344-55779999999997499999799978 Q ss_pred CC----CC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 43----21-0000111222010001023333321000001 Q gi|254780526|r 80 DY----PS-LQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 (223) Q Consensus 80 ~~----~~-~~~~i~~l~~GAddyl~KP~~~~eL~ari~a 114 (223) +- .. .+..-+..+.|+|......-++++.++.++. T Consensus 93 ~~~~~~~~~~~~~~~l~~~G~~~vf~~gt~~~~~~~~i~~ 132 (137) T 1ccw_A 93 NIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137) T ss_dssp SCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH T ss_conf 8788744418899999975988897998899999999999 No 128 >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} Probab=88.84 E-value=0.28 Score=27.23 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.3 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 2233212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +...+.||..|.+++.+|=++.+ ++-.+|.+.+-. ....+..||.+.+.||-+| T Consensus 27 ~e~~~~LS~~E~~VM~iLW~~~~--~t~~eI~~~l~~--~~~~~~sTv~T~L~RL~~K 80 (99) T 2k4b_A 27 NEVEFNVSNAELIVMRVIWSLGE--ARVDEIYAQIPQ--ELEWSLATVKTLLGRLVKK 80 (99) T ss_dssp ----CCCCCSCSHHHHHHHHHSC--EEHHHHHHTCCG--GGCCCHHHHHHHHHHHHHT T ss_pred HHHCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHHH--CCCCCHHHHHHHHHHHHHC T ss_conf 76216999999999999990799--589999999850--1386556699999999988 No 129 >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Probab=88.64 E-value=0.7 Score=24.68 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=57.0 Q ss_pred HHHHHHCCCEEEEEECHHHH--HHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC Q ss_conf 99999789889998285899--99998289967999900789---66217999863101332100002443210000111 Q gi|254780526|r 16 IALFGDDGVSLEGFNSLEFE--EWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 (223) Q Consensus 16 ~~~L~~~g~~v~~~~~~~~~--~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~ 90 (223) ...|-..||.|-.+.+.+.. ..+.... -..++-+.-|. .|......++.++++.++|+|+=.+-....+...+ T Consensus 128 a~~Lvk~gF~VlpY~~dD~~~ak~L~d~G--c~avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vpviVDAGIG~pSdAa~a 205 (265) T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLAEIG--CIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIA 205 (265) T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHHHSC--CSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHH T ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHCC--CEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHH T ss_conf 99999789779624784699999987549--6375448321011246367789999985389529974688978899999 Q ss_pred CCCCCEEEEEC Q ss_conf 22201000102 Q gi|254780526|r 91 FDSGVDDVVNK 101 (223) Q Consensus 91 l~~GAddyl~K 101 (223) ++.|+|..+.- T Consensus 206 MElG~DaVLvN 216 (265) T 1wv2_A 206 MELGCEAVLMN 216 (265) T ss_dssp HHHTCSEEEES T ss_pred HHCCCCEEEEC T ss_conf 97148889853 No 130 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=87.85 E-value=0.32 Score=26.78 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=36.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 21242101234432112883400899998652876577766136889999998 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ..||+.++.+|..|..++| ++|..+|++.+ ..+..||..++.+|-+ T Consensus 17 ~gLs~~~~~iL~~L~~~~~-~~t~~eia~~~------~~~~~tvs~~l~~L~~ 62 (109) T 2d1h_A 17 YKITDTDVAVLLKMVEIEK-PITSEELADIF------KLSKTTVENSLKKLIE 62 (109) T ss_dssp HTCCHHHHHHHHHHHHHCS-CEEHHHHHHHH------TCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC-CCCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 6959999999999997598-98999999998------9788589999999998 No 131 >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A Probab=87.72 E-value=0.27 Score=27.29 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=41.8 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 22332124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) .++...||..|++++.+|-+++ .+|-.+|.+.+-. +...+.+|+.+.+.||-+|= T Consensus 2 ~~k~~~lt~~E~~VM~~LW~~~--~~t~~ei~~~l~~--~~~~~~~Tv~t~L~RL~~KG 56 (123) T 1okr_A 2 DNKTYEISSAEWEVMNIIWMKK--YASANNIIEEIQM--QKDWSPKTIRTLITRLYKKG 56 (123) T ss_dssp --CCCCCCHHHHHHHHHHHHHS--SEEHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCC T ss_conf 9878998999999999998379--9799999999751--23875424999999999889 No 132 >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A Probab=86.66 E-value=0.46 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=41.4 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 233212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) .+.+.||+.|++++.+|=+++ .+|-.+|.+.+-. ....+.+||.+.+.||-+| T Consensus 3 ~k~~~Lt~~E~~VM~~lW~~~--~~t~~ei~~~l~~--~~~~~~~Tv~t~L~RL~~K 55 (126) T 1sd4_A 3 NKQVEISMAEWDVMNIIWDKK--SVSANEIVVEIQK--YKEVSDKTIRTLITRLYKK 55 (126) T ss_dssp --CCCCCHHHHHHHHHHHHSS--SEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHT T ss_pred CCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHCC--CCCCCHHHHHHHHHHHHHC T ss_conf 667998999999999998689--9779999998533--4688560699999999978 No 133 >3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} Probab=85.69 E-value=1.9 Score=21.99 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=64.0 Q ss_pred EEEECCCHHHHHHHHHHHHHC---CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECC Q ss_conf 689709899999999999978---98899982858999999828996799990078966217999863101332100002 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD---GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~---g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~l 78 (223) ++|.|+|....+.|..+|... .+.+.+|++.+.........++|+.+++-+.... . .+.....++.++ T Consensus 24 l~i~d~d~~y~~~L~~~l~~~~~~~~~~~~fs~~e~l~~~~~~~~~dvlli~~~~~~~--~-------~~~~~~~~~~~l 94 (373) T 3fkq_A 24 VALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNID--K-------SEFKRNCGLAYF 94 (373) T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCCCC--G-------GGGCSSCEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHH--H-------HHHHHCCCEEEE T ss_conf 9999677999999999985532784499994789999999860799899988865654--5-------543203662786 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 4432100001112220100010233333210000011 Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 (223) Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~ 115 (223) +.....+.. +.-.++.|+-+.++++..|.+. T Consensus 95 ~~~~~~~~~------~~~~~i~Kyq~~~~i~~~i~~~ 125 (373) T 3fkq_A 95 TGTPGIELI------KDEIAICKYQRVDVIFKQILGV 125 (373) T ss_dssp ESCTTCCEE------TTEEEEETTSCHHHHHHHHHHH T ss_pred CCCCCCCCC------CCCCCHHCCCCHHHHHHHHHHH T ss_conf 167885433------4544201266688999999999 No 134 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=85.43 E-value=1.3 Score=23.08 Aligned_cols=93 Identities=8% Similarity=-0.164 Sum_probs=46.6 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 68970989999999999997898899982858-999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) +++||.|+.-.......+...|+.+...+..+ +.+.-....+.+.+++.. + .+...+..+...|+ +++++|+.-+ T Consensus 29 v~vId~~~e~~~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~t--~-~d~~n~~~~l~~r~~~~~~~iia~~ 105 (153) T 1id1_A 29 VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS--D-NDADNAFVVLSAKDMSSDVKTVLAV 105 (153) T ss_dssp EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS--S-CHHHHHHHHHHHHHHTSSSCEEEEC T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEECC--C-CHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 899978867789999985438987999167999999757988338999986--9-8799999999999978998399998 Q ss_pred CCCCCCCCCCCCCCCCEEEE Q ss_conf 43210000111222010001 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVV 99 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl 99 (223) ... ++.-..-.+|||.-+ T Consensus 106 ~~~--~~~~~l~~~G~d~vi 123 (153) T 1id1_A 106 SDS--KNLNKIKMVHPDIIL 123 (153) T ss_dssp SSG--GGHHHHHTTCCSEEE T ss_pred CCH--HHHHHHHHCCCCEEE T ss_conf 898--999999977989999 No 135 >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Probab=84.98 E-value=1 Score=23.66 Aligned_cols=96 Identities=9% Similarity=-0.004 Sum_probs=56.4 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE---CHHHHHHHHHHCCCCEEEEEEECCCC-C-CHHHHHHHHHHCC---CCCCEEC Q ss_conf 0989999999999997898899982---85899999982899679999007896-6-2179998631013---3210000 Q gi|254780526|r 6 DDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGK-G-EKVLELPRIIRAH---SQVPLIG 77 (223) Q Consensus 6 eDd~~~~~~l~~~L~~~g~~v~~~~---~~~~~~~l~~~~~~d~~iid~~l~~~-~-~~g~~l~~~lr~~---~~~pII~ 77 (223) |-+..=...+...|+..||.|.-.. ..+.........+||++.+-....++ . ...-++.+.+|+. +++||++ T Consensus 103 d~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~~~~~~~~~~~d~v~ls~S~~~~~~~~~~~~~i~~lr~~~~~~~v~v~v 182 (215) T 3ezx_A 103 DIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMF 182 (215) T ss_dssp CCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEE T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 88889999999999977996998889999999999999739981489985665433699999999999808889995998 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCC Q ss_conf 244321000011122201000102333 Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIH 104 (223) Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~ 104 (223) =.+.-+ ++ -+=+.|||.|-.-+.+ T Consensus 183 GGa~~~-~~--~a~~~GAD~~a~da~~ 206 (215) T 3ezx_A 183 GGAPVS-DK--WIEEIGADATAENAAE 206 (215) T ss_dssp ESSSCC-HH--HHHHHTCCBCCSSHHH T ss_pred ECCCCC-HH--HHHHHCCCEECCCHHH T ss_conf 890279-99--9998398878389999 No 136 >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Probab=84.93 E-value=0.46 Score=25.81 Aligned_cols=51 Identities=8% Similarity=0.177 Sum_probs=39.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC Q ss_conf 2124210123443211288340089999865287657776613688999999860 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL 201 (223) -+||..|++++..|=.+. +++-.+|.+.+-+. ...+.+||.+.+.||-+|= T Consensus 5 ~~Lt~~E~~VM~~lW~~~--~~t~~ei~~~l~~~--~~~~~sTv~T~L~RL~~Kg 55 (82) T 1p6r_A 5 PQISDAELEVMKVIWKHS--SINTNEVIKELSKT--STWSPKTIQTMLLRLIKKG 55 (82) T ss_dssp CCCCHHHHHHHHHHHTSS--SEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCC T ss_conf 999999999999998179--97899999986023--6972857999999999889 No 137 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=84.54 E-value=0.49 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=39.8 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 33212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +...||..||.+|..|..++|..++-.+|++.+ ..+..++-..+.+|-+| T Consensus 31 ~~~~lt~~q~~iL~~l~~~~~~~~t~~ela~~l------~~~~~~vs~~l~~Le~~ 80 (127) T 2frh_A 31 KEFSISFEEFAVLTYISENKEKEYYLKDIINHL------NYKQPQVVKAVKILSQE 80 (127) T ss_dssp HTTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHS------SSHHHHHHHHHHHHHHT T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 885979999999999982899987899999997------98873699999999978 No 138 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Probab=81.95 E-value=0.94 Score=23.87 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=38.9 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 33212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +...||..||.+|.+|..+++..++-.+|++.+ ..+..++-..|.+|-+| T Consensus 152 k~~~Ls~~e~~vL~~L~~~~~~~~~~~~la~~l------~~~~~~vs~~i~~L~~~ 201 (250) T 1p4x_A 152 KHLTLSFVEFTILAIITSQNKNIVLLKDLIETI------HHKYPQTVRALNNLKKQ 201 (250) T ss_dssp HHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHS------SSCHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 874989999999999986999967699999997------88850699999999988 No 139 >2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} Probab=81.64 E-value=2.1 Score=21.69 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=25.3 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCC Q ss_conf 2233212421012344321128834008999986528 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg 179 (223) ......||+.-.+.|...+- .++|+|.+|. .+.| T Consensus 92 ~~~~~~LS~aalETLAIIAY--~QPiTr~eIe-~IRG 125 (219) T 2z99_A 92 DGARTKLTRAALETLAVVAY--RQPVTRARVS-AVRG 125 (219) T ss_dssp HHHSCCCCHHHHHHHHHHHH--HCSEEHHHHH-HHHT T ss_pred CCCCCCCCHHHHHHHHHHHH--CCCCCHHHHH-HHCC T ss_conf 67667678999999999997--3984799999-8739 No 140 >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} Probab=81.53 E-value=1.1 Score=23.48 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=40.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 212421012344321128834008999986528765777661368899999986014567 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) -.|++++..++.+-.-. | .|..||++.+ .++..||.++++|-|+||+.... T Consensus 14 ~~Lp~~~r~v~~l~~~~-g--~s~~EIA~~l------gis~~tvk~~l~Ra~~~Lr~~l~ 64 (70) T 2o8x_A 14 ADLTTDQREALLLTQLL-G--LSYADAAAVC------GCPVGTIRSRVARARDALLADAE 64 (70) T ss_dssp TSSCHHHHHHHHHHHTS-C--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHHC--- T ss_pred HCCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 86999999999989990-9--9999999998------97999999999999999999861 No 141 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=80.00 E-value=1.2 Score=23.26 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=37.7 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 2421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ||+++..++.+-.-. | .|..+|++.+ .++..||.++++|-|++|+. T Consensus 26 Lpe~qR~v~~l~~~e-~--ls~~EIA~~l------giS~~aV~~~l~RA~~~L~~ 71 (113) T 1xsv_A 26 LTNKQRNYLELFYLE-D--YSLSEIADTF------NVSRQAVYDNIRRTGDLVED 71 (113) T ss_dssp SCHHHHHHHHHHHTS-C--CCHHHHHHHT------TCCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH T ss_conf 999999999999991-9--9999999998------96999999999999999999 No 142 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=79.97 E-value=1.3 Score=22.91 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=37.5 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ...||..++.+|.+|..+++..+|-.+|++.+. .+..+ ++|+-++|...+ T Consensus 29 ~~glt~~q~~vL~~l~~~~~~~~t~~~La~~l~------i~~~~----vs~~v~~L~~~g 78 (141) T 3bro_A 29 KYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFS------IKSST----ATVLLQRMEIKK 78 (141) T ss_dssp TTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT------CCHHH----HHHHHHHHHHTT T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC------CCHHH----HHHHHHHHHHHH T ss_conf 869899999999999848999959999999989------78858----999999998877 No 143 >1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A Probab=79.48 E-value=1 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=17.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 22222222222222222223321242101234432112883 Q gi|254780526|r 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 (223) Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~ 166 (223) +.-|++.+......+..+.-.+.+..-|. .++.|....+. T Consensus 125 I~~GDiviv~~~~~~~~GdIvv~~~~~e~-t~Kr~~~~~~~ 164 (202) T 1jhf_A 125 IMDGDLLAVHKTQDVRNGQVVVARIDDEV-TVKRLKKQGNK 164 (202) T ss_dssp CCTTCEEEEEECSCCCTTSEEEEEETTEE-EEEEEEEETTE T ss_pred CCCCCEEEEECCCCCCCCCEEEEEECCEE-EEEEEEEECCE T ss_conf 47983999972443237978999989957-89999998999 No 144 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=79.48 E-value=1.7 Score=22.22 Aligned_cols=91 Identities=11% Similarity=0.117 Sum_probs=53.1 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 68970989999999999997898899982858-999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) +++||.|+...+. ++..|+.|...+..+ +.+......+.+.+++.+ + .....+.++...|+ .++++|++-+ T Consensus 30 vvvID~d~~~v~~----l~~~g~~vi~GDat~~~~L~~Agi~~A~~vIia~--~-d~~~n~~i~~~ar~~~p~~~Iiara 102 (413) T 3l9w_A 30 MVVLDHDPDHIET----LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI--D-DPQTNLQLTEMVKEHFPHLQIIARA 102 (413) T ss_dssp EEEEECCHHHHHH----HHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC--S-SHHHHHHHHHHHHHHCTTCEEEEEE T ss_pred EEEEECCHHHHHH----HHHCCCCEEEECCCCHHHHHHCCCCCCCEEEEEE--C-CHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 8999899999999----9977990999638999999856977599999971--9-8899999999999978998399997 Q ss_pred CCCCCCCCCCCCCCCCEEEEEC Q ss_conf 4321000011122201000102 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNK 101 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~K 101 (223) . +.++.-...++|||..+.- T Consensus 103 ~--~~~~~~~L~~~Gad~Vi~e 122 (413) T 3l9w_A 103 R--DVDHYIRLRQAGVEKPERE 122 (413) T ss_dssp S--SHHHHHHHHHTTCSSCEET T ss_pred C--CHHHHHHHHHCCCCEEECC T ss_conf 7--9999999997798999884 No 145 >1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A* Probab=78.77 E-value=3.4 Score=20.39 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=55.8 Q ss_pred CCCEEEEEECHH-----HHH-------HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC Q ss_conf 898899982858-----999-------99982899679999007896621799986310133210000244321000011 Q gi|254780526|r 22 DGVSLEGFNSLE-----FEE-------WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 (223) Q Consensus 22 ~g~~v~~~~~~~-----~~~-------~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~ 89 (223) .++.|.+++++. ..+ .....+.||++++.. |-+..-|-.-+|++=+...+|.|++|....... .. T Consensus 31 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~~~~pDf~I~is--PN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~K~-kd 107 (283) T 1qv9_A 31 EDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGG--PNPAAPGPSKAREMLADSEYPAVIIGDAPGLKV-KD 107 (283) T ss_dssp SSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEEC--SCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGG-HH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHH-HH T ss_conf 686499952677779789999998877788740899899978--998899956799999747998799827863446-89 Q ss_pred CCCCCCEEEEECCCCC Q ss_conf 1222010001023333 Q gi|254780526|r 90 FFDSGVDDVVNKPIHH 105 (223) Q Consensus 90 ~l~~GAddyl~KP~~~ 105 (223) .++...-+||.-|.|+ T Consensus 108 ~l~~~g~GYIivk~Dp 123 (283) T 1qv9_A 108 EMEEQGLGYILVKPDA 123 (283) T ss_dssp HHHHTTCEEEEETTSC T ss_pred HHHHCCCCEEEEECCC T ss_conf 9986598479983676 No 146 >1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60 Probab=78.11 E-value=2.8 Score=20.84 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=25.7 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC Q ss_conf 2332124210123443211288340089999865287 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~ 180 (223) .....||+...+.|...+- +++++|.+|.+ +.|. T Consensus 87 ~~~~~LS~aalEtLAiIAy--~QPitr~eI~~-iRGv 120 (162) T 1t6s_A 87 VIQRRLSRSMLEVLAVVAW--HQPVTKGEIQQ-IRGA 120 (162) T ss_dssp HHHHHHHHHHHHHHHHHHH--HCSEEHHHHHH-HHTC T ss_pred CCCCCCCHHHHHHHHHHHH--CCCCCHHHHHH-HHCC T ss_conf 4446569999999999996--29958999999-9788 No 147 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=76.79 E-value=3.9 Score=20.00 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=49.2 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC Q ss_conf 68970989999999999997898899982858-999999828996799990078966217999863101-3321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223) +++||.|+...+. +.+.|+.+..-+..+ ..+......+.+.+++. ++ .+...+.++...|+ .++++|+.-+ T Consensus 33 vvvId~d~~~~~~----~~~~g~~~i~GD~~~~~~L~~a~i~~a~~vi~~--~~-~d~~n~~~~~~~r~l~p~~~iiar~ 105 (140) T 3fwz_A 33 LVVIETSRTRVDE----LRERGVRAVLGNAANEEIMQLAHLECAKWLILT--IP-NGYEAGEIVASARAKNPDIEIIARA 105 (140) T ss_dssp EEEEESCHHHHHH----HHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC--CS-CHHHHHHHHHHHHHHCSSSEEEEEE T ss_pred EEEEECCCHHHHH----HHHCCCEEEECCCCCHHHHHHHCHHHHCEEEEC--CC-CHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 8999888077501----565396588515899999997274451899998--79-8899999999999978998499998 Q ss_pred CCCCCCCCCCCCCCCCEEEEE Q ss_conf 432100001112220100010 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVN 100 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~ 100 (223) . +.++.-...++|||..+. T Consensus 106 ~--~~~~~~~l~~~G~~~vi~ 124 (140) T 3fwz_A 106 H--YDDEVAYITERGANQVVM 124 (140) T ss_dssp S--SHHHHHHHHHTTCSEEEE T ss_pred C--CHHHHHHHHHCCCCEEEC T ss_conf 7--999999999779899998 No 148 >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} Probab=76.73 E-value=1.4 Score=22.81 Aligned_cols=16 Identities=13% Similarity=-0.052 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHCCCE Q ss_conf 9999999999978988 Q gi|254780526|r 10 LVKDGYIALFGDDGVS 25 (223) Q Consensus 10 ~~~~~l~~~L~~~g~~ 25 (223) .+.+.+..+.++.|+. T Consensus 9 ~il~~I~~~~~~~G~~ 24 (196) T 3k2z_A 9 KVLLFIEEFIEKNGYP 24 (196) T ss_dssp HHHHHHHHHHHHHSSC T ss_pred HHHHHHHHHHHHHCCC T ss_conf 9999999999984989 No 149 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=75.39 E-value=4.2 Score=19.77 Aligned_cols=13 Identities=0% Similarity=0.156 Sum_probs=8.3 Q ss_pred CCCCEEEEECCCC Q ss_conf 2201000102333 Q gi|254780526|r 92 DSGVDDVVNKPIH 104 (223) Q Consensus 92 ~~GAddyl~KP~~ 104 (223) -.|||-.-+.||+ T Consensus 356 ~GGadsl~~~~~d 368 (727) T 1req_A 356 QGHTQSLHTNSLD 368 (727) T ss_dssp HTTCSEEECCCTT T ss_pred HCCCCEEEECCCH T ss_conf 8048768724804 No 150 >1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Probab=75.14 E-value=1.8 Score=22.15 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=38.0 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 2421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ||++++.++.+..-. | .|..+|++.+ .++..||.++++|=|++|+. T Consensus 23 L~~~qR~vi~L~~~~-~--ls~~EIA~~l------gis~~~V~~~l~Ra~~~L~e 68 (113) T 1s7o_A 23 LTDKQMNYIELYYAD-D--YSLAEIADEF------GVSRQAVYDNIKRTEKILET 68 (113) T ss_dssp SCHHHHHHHHHHHHT-C--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH-H--HHHHHHHHHH------CCCHHHHHHHHHHHHHHHHH T ss_conf 999999999999997-3--1299999998------97999999999999999975 No 151 >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Probab=74.92 E-value=4.3 Score=19.69 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=48.0 Q ss_pred HHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 999999828996799990078966-217999863101332100002443210000111222010001023 Q gi|254780526|r 34 FEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223) Q Consensus 34 ~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223) .+..+.....-.+.++|++-...+ ..-+++++.+.+...+|+.+=.+-.+.++.-+.|++||+-.+.-. T Consensus 36 ~a~~~~~~g~dei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kvii~S 105 (252) T 1ka9_F 36 AARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNS 105 (252) T ss_dssp HHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECC T ss_conf 9999998699989999532542334028999999875148745773682678887899873898999884 No 152 >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Probab=74.18 E-value=4.5 Score=19.57 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=57.1 Q ss_pred HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEEC--------------CCCCCHHHHHHHHHHCCCCCCEECCC Q ss_conf 99999978988999-8285899999982899679999007--------------89662179998631013321000024 Q gi|254780526|r 15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL--------------IGKGEKVLELPRIIRAHSQVPLIGIS 79 (223) Q Consensus 15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l--------------~~~~~~g~~l~~~lr~~~~~pII~lt 79 (223) +...+...|..|.. +.+.+.+... ...-+|.+++.-.- ..+....+.++.++++..++|||.=. T Consensus 137 ~i~~lk~~g~~v~~~v~s~~~a~~a-~~~g~D~iv~qG~eAGGH~g~~~~~~~~~~~~~~~~~l~~~v~~~~~iPviaAG 215 (369) T 3bw2_A 137 VIARLRRAGTLTLVTATTPEEARAV-EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAG 215 (369) T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEES T ss_pred HHHHHHHCCCEEEEECCCHHHHHHH-HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC T ss_conf 9999997695598505889999999-981898444105556778887766443444441088899999975699789624 Q ss_pred CCCCCCCCCCCCCCCCEEEEE Q ss_conf 432100001112220100010 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVN 100 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~ 100 (223) +-.+..+..++|.+|||.... T Consensus 216 GI~~g~~iaaaLalGAdgV~~ 236 (369) T 3bw2_A 216 GIMRGGQIAAVLAAGADAAQL 236 (369) T ss_dssp SCCSHHHHHHHHHTTCSEEEE T ss_pred CCCCHHHHHHHHHCCCCEEEE T ss_conf 777999999999539787998 No 153 >3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis} Probab=73.91 E-value=2.4 Score=21.34 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=37.8 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 12421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) .|++++..++.+..-. | .|..+|++.+ .++.+||.++++|-+++|+. T Consensus 37 ~L~~~~r~vi~l~~~~-g--~s~~eIA~~l------gis~~tV~~~l~Ra~~~Lr~ 83 (92) T 3hug_A 37 QLSAEHRAVIQRSYYR-G--WSTAQIATDL------GIAEGTVKSRLHYAVRALRL 83 (92) T ss_dssp TSCHHHHHHHHHHHTS-C--CCHHHHHHHH------TSCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH T ss_conf 7999999999999993-9--9999999998------96999999999999999999 No 154 >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Probab=73.19 E-value=4.8 Score=19.42 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=44.1 Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCH-HHHHHHHHHCCCCCCEECCC Q ss_conf 96897098999999999999789889998285899999982899679999007896621-79998631013321000024 Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK-VLELPRIIRAHSQVPLIGIS 79 (223) Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~-g~~l~~~lr~~~~~pII~lt 79 (223) ||+|||-...+...+...|+..|+.+....+....... ....+|-+++--.-..|... ...+++... ..+.|++-+. T Consensus 2 mI~iiD~g~~ft~ni~~~l~~lG~~~~i~p~~~~~~~~-~~~~~~gv~~sgg~~~~~~~~~~~~i~~~~-~~~~PilGIC 79 (189) T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEI-KAMNPKGIIFSGGPSLENTGNCEKVLEHYD-EFNVPILGIC 79 (189) T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHH-HHTCCSEEEECCCSCTTCCTTHHHHHHTGG-GTCSCEEEET T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHCCCEEEECCCCCCCCCCCHHHHHHHHH-HCCCCEEEEE T ss_conf 89999799848999999999789928999699988999-831899787589987865466499999998-5599689984 No 155 >3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp} Probab=72.82 E-value=2.5 Score=21.18 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=32.0 Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 4210123443211288340089999865287657776613688999999860145 Q gi|254780526|r 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 (223) Q Consensus 150 T~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~ 204 (223) ++.+..++.+.+. | .|..+|++.+ .++..+|..+++|.|+||+.. T Consensus 111 ~~~~~~~~~~~~~--g--~s~~EIA~~l------gis~~~V~~~~~Ra~~kl~~~ 155 (164) T 3mzy_A 111 SKFEKEVLTYLIR--G--YSYREIATIL------SKNLKSIDNTIQRIRKKSEEW 155 (164) T ss_dssp CHHHHHHHHHHTT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH T ss_conf 6999999876562--3--8999999998------919999999999999999999 No 156 >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Probab=72.73 E-value=4.1 Score=19.85 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=40.6 Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHH--HHHHHH--CCCCCCE Q ss_conf 968970989999999999997898899982858-99999982899679999007896621799--986310--1332100 Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLE--LPRIIR--AHSQVPL 75 (223) Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~-~~~~l~~~~~~d~~iid~~l~~~~~~g~~--l~~~lr--~~~~~pI 75 (223) ||||||-...+..-+..+|++.|..+.+..+.+ ....+ ....+|.+++ ..=|+...+..+ ....+. .....|| T Consensus 3 ~~liiD~~dsft~Nl~~~l~~lG~~~~v~~~d~~~~~~~-~~~~~~gvil-sgGp~~p~~~~~~~~~~~i~~~~~~~~Pi 80 (195) T 1qdl_B 3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGI-ERIDPDRLII-SPGPGTPEKREDIGVSLDVIKYLGKRTPI 80 (195) T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHH-HHHCCSEEEE-CCCSSCTTSHHHHTTHHHHHHHHTTTSCE T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHCCCCEEEE-CCCCCCCCCCCCCCCCHHHHHHHCCCCCE T ss_conf 899997887179999999986899279980898999999-8619897998-89999743343344308999985589988 Q ss_pred ECCC Q ss_conf 0024 Q gi|254780526|r 76 IGIS 79 (223) Q Consensus 76 I~lt 79 (223) +=+. T Consensus 81 LGIC 84 (195) T 1qdl_B 81 LGVC 84 (195) T ss_dssp EEET T ss_pred EEEC T ss_conf 9982 No 157 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=71.92 E-value=3.2 Score=20.51 Aligned_cols=47 Identities=21% Similarity=0.380 Sum_probs=31.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 212421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ..||..++.+|.+|..+++..+|-.+|++.+ ..+..+ |+++-++|.. T Consensus 27 ~glt~~q~~vL~~l~~~~~~~~t~~ela~~l------~~~~~t----vs~~v~~L~~ 73 (139) T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKAL------QRTGPT----VSNLLRNLER 73 (139) T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHH------TCCHHH----HHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHH----HHHHHHHHHH T ss_conf 6989999999999983599996999999998------968878----9999999997 No 158 >1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Probab=70.56 E-value=1.4 Score=22.73 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=5.8 Q ss_pred CCCCHHHHHHHHH Q ss_conf 8340089999865 Q gi|254780526|r 165 GKRVAKTQIFSAI 177 (223) Q Consensus 165 g~~vsr~~l~~~i 177 (223) |-+-|.+++...+ T Consensus 182 GGI~t~ed~~~al 194 (223) T 1y0e_A 182 GNVITPDMYKRVM 194 (223) T ss_dssp SSCCSHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 8989999999999 No 159 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Probab=70.47 E-value=3 Score=20.73 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=37.5 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE-EECCCCEEE Q ss_conf 1242101234432112883400899998652876577766136889999998601456777157-786863031 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI 220 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~-tvrg~GY~l 220 (223) .||..|+.+|..|.++++ .|-.+|++.+ ..+..|+ +|.-++|+..+ +|. .-|+.+|++ T Consensus 149 ~ls~~~~~iL~~L~~~~~--~s~~ela~~l------~~s~~tv----~r~l~~Le~~G---lV~r~~r~~~v~L 207 (244) T 2wte_A 149 DYSREEMKLLNVLYETKG--TGITELAKML------DKSEKTL----INKIAELKKFG---ILTQKGKDRKVEL 207 (244) T ss_dssp CCCHHHHHHHHHHHHHTC--BCHHHHHHHH------TCCHHHH----HHHHHHHHHTT---SEEEETTTTEEEE T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHH----HHHHHHHHHCC---CEEEECCCCEEEE T ss_conf 999999999999997799--8999999997------9798899----99999999889---9998378227998 No 160 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=69.99 E-value=5.6 Score=18.97 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=13.2 Q ss_pred HHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCE Q ss_conf 7999863101-332100002443210000111222010 Q gi|254780526|r 60 VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVD 96 (223) Q Consensus 60 g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAd 96 (223) .+.++...|+ +++.+|+..+...+ +.-...++||| T Consensus 119 n~~~~~~~r~~~~~~~Iiara~~~~--~~~~L~~~Gad 154 (183) T 3c85_A 119 NQTALEQLQRRNYKGQIAAIAEYPD--QLEGLLESGVD 154 (183) T ss_dssp HHHHHHHHHHTTCCSEEEEEESSHH--HHHHHHHHTCS T ss_pred HHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHCCCC T ss_conf 9999999998789947999977999--99999986999 No 161 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=69.27 E-value=1.6 Score=22.47 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=38.0 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 332124210123443211288340--0899998652876577766136889999998601456 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRV--AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~v--sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ..-.||+.|..+..|+.+|+..+. |=.+|++.. .+++-| |.|+=|||+-.+ T Consensus 15 ~~~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~------~vS~aT----I~Rf~kklGf~g 67 (111) T 2o3f_A 15 MXHXLPPSERKLADYILAHPHXAIESTVNEISALA------NSSDAA----VIRLCXSLGLKG 67 (111) T ss_dssp HGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHT------TCCHHH----HHHHHHHTTCSS T ss_pred HHCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHH------CCCHHH----HHHHHHHHCCCC T ss_conf 63417999999999999592476437899999897------989879----999999927798 No 162 >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} Probab=69.14 E-value=5.9 Score=18.86 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=58.4 Q ss_pred CCEEEEEECHHHHHHHHHHCCCCEEEEEEECC-CCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE- Q ss_conf 98899982858999999828996799990078-9662179998631013321000024432100001112220100010- Q gi|254780526|r 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN- 100 (223) Q Consensus 23 g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~-~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~- 100 (223) |..-......+.+..+.....-.+.++|++.. .....-+++++.+.+...+|+.+-.+-.+.++..+.|.+|||--+. T Consensus 24 g~~~~~~~~~d~~~~~~~~gadei~i~did~~~~~~g~n~~lI~~I~~~~~iPl~vGGGIr~~ed~~~ll~~GadkVii~ 103 (266) T 2w6r_A 24 GKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266) T ss_dssp TTEEEEEEHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC T ss_pred CEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHEECCEEEECCCCCCCCCHHHHHHHHHHHEEEC T ss_conf 98217879799999999879998999996087557886677764345324854997677212021003332200000113 Q ss_pred -----CCCCCCCC Q ss_conf -----23333321 Q gi|254780526|r 101 -----KPIHHREI 108 (223) Q Consensus 101 -----KP~~~~eL 108 (223) +|...+++ T Consensus 104 s~~~~~~~~~~~i 116 (266) T 2w6r_A 104 SVFHFREIDMREL 116 (266) T ss_dssp CCC------CHHH T ss_pred CCCCCCCHHHHHH T ss_conf 3224551122667 No 163 >1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A Probab=68.96 E-value=3.2 Score=20.53 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=37.6 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 124210123443211288340089999865287657776613688999999860145 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~ 204 (223) .|++++..++.+..-. | .|-.+|++.+ .++.+||.++++|.++||+.. T Consensus 140 ~L~~~~r~ii~l~y~~-g--~s~~eIA~~l------g~s~~tV~~~l~ra~~~Lr~~ 187 (194) T 1or7_A 140 SLPEDLRMAITLRELD-G--LSYEEIAAIM------DCPVGTVRSRIFRAREAIDNK 187 (194) T ss_dssp HSCHHHHHHHHHHHTT-C--CCHHHHHHHT------TSCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH T ss_conf 0999999999999983-9--8999999998------939999999999999999999 No 164 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=67.86 E-value=5 Score=19.31 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=25.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 21242101234432112883400899998652876577766136889999998 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ..||..++.+|.+|..++| ++-.+|++.+ ..+..++-..|.+|-+ T Consensus 42 ~glt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~~vs~~l~~L~~ 86 (162) T 3k0l_A 42 LEISLPQFTALSVLAAKPN--LSNAKLAERS------FIKPQSANKILQDLLA 86 (162) T ss_dssp TTCCHHHHHHHHHHHHCTT--CCHHHHHHHH------TSCGGGHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 5979999999999997799--8999999998------9688699999999998 No 165 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=66.81 E-value=5.2 Score=19.18 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=24.7 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 32124210123443211288340089999865287657776613688999999 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) .+.||..+|.+|..|..++| +|-.+|.+.+ ..+..++-..+.+|- T Consensus 24 ~~glt~~q~~vL~~l~~~~~--~t~~~La~~l------~i~~~~vs~~v~~L~ 68 (144) T 1lj9_A 24 ELSLTRGQYLYLVRVCENPG--IIQEKIAELI------KVDRTTAARAIKRLE 68 (144) T ss_dssp GGTCTTTHHHHHHHHHHSTT--EEHHHHHHHH------TCCHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 77989999999999984899--7999999998------978889999999999 No 166 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A Probab=66.42 E-value=5.2 Score=19.20 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=32.3 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 321242101234432112883400899998652876577766136889999998 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ...||..|+.+|..|..+++ .+-.+|++.+ .++..++--.|.+|.+ T Consensus 32 ~~~lt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~vsr~l~~L~~ 77 (142) T 3ech_A 32 RLDLTPPDVHVLKLIDEQRG--LNLQDLGRQM------CRDKALITRKIRELEG 77 (142) T ss_dssp TCCCCHHHHHHHHHHHHTTT--CCHHHHHHHH------C---CHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 68979999999999997799--8999999998------9698799999999998 No 167 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=66.31 E-value=4.9 Score=19.33 Aligned_cols=46 Identities=11% Similarity=0.235 Sum_probs=28.9 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 332124210123443211288340089999865287657776613688999999 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) ....||+.|+.+|.++..++| ++-.+|++.+ ..+..++--.|.+|- T Consensus 23 ~~~~lt~~q~~vL~~i~~~~~--~t~~eLa~~~------~~~~~~vs~~v~~L~ 68 (138) T 3bpv_A 23 GHLNLTDAQVACLLRIHREPG--IKQDELATFF------HVDKGTIARTLRRLE 68 (138) T ss_dssp GGGTCCHHHHHHHHHHHHSTT--CBHHHHHHHH------TCCHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 657989999999999985899--7999999998------979879999999999 No 168 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=66.03 E-value=5.4 Score=19.06 Aligned_cols=46 Identities=7% Similarity=0.247 Sum_probs=28.8 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 321242101234432112883400899998652876577766136889999998 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ...||..|+.+|..|..++| ++-.+|.+.+ ..+..|+-..+.+|-+ T Consensus 28 ~~~lt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~tvs~~l~~L~~ 73 (139) T 3bja_A 28 QYDISYVQFGVIQVLAKSGK--VSMSKLIENM------GCVPSNMTTMIQRMKR 73 (139) T ss_dssp GGTCCHHHHHHHHHHHHSCS--EEHHHHHHHC------SSCCTTHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHC------CCCHHHHHHHHHHHHH T ss_conf 86989999999999998699--8999998470------8688899999999998 No 169 >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} Probab=65.98 E-value=6.8 Score=18.46 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=44.4 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223) +.+||.|+..... +...|+.+...+..+ ...+....-.+...+.+..+ .+...+..+...|+.+..||+..+.. T Consensus 32 vvvid~d~~~~~~----~~~~~~~~~~gd~~~-~~~L~~~~i~~a~~vi~~~~-~d~~n~~~~~~~k~~~~~~ii~~~~~ 105 (141) T 3llv_A 32 VLAVDKSKEKIEL----LEDEGFDAVIADPTD-ESFYRSLDLEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIVRVSS 105 (141) T ss_dssp EEEEESCHHHHHH----HHHTTCEEEECCTTC-HHHHHHSCCTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEEEESC T ss_pred EEEEECCHHHHHH----HHHCCCEEEEECCCC-HHHHHHHHHHCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 8999571999999----984597299934678-88886666723889999818-80999999999985589988999869 Q ss_pred CCCCCCCCCCCCCCEE Q ss_conf 2100001112220100 Q gi|254780526|r 82 PSLQTTLDFFDSGVDD 97 (223) Q Consensus 82 ~~~~~~i~~l~~GAdd 97 (223) .++.-..-++|||. T Consensus 106 --~~~~~~l~~~G~~~ 119 (141) T 3llv_A 106 --PKKKEEFEEAGANL 119 (141) T ss_dssp --GGGHHHHHHTTCSE T ss_pred --HHHHHHHHHCCCCE T ss_conf --88999999779899 No 170 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=65.86 E-value=3.8 Score=20.08 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=35.0 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 3321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) +.+-||+.|+.++.+|..+.+ ++-.+|++.+ ..+..+ |+++-++|...+ T Consensus 14 ~~~glt~~e~~v~~~L~~~~~--~t~~eia~~~------~~~~~~----v~~~l~~L~~~G 62 (109) T 1sfx_A 14 EKLSFKPSDVRIYSLLLERGG--MRVSEIAREL------DLSARF----VRDRLKVLLKRG 62 (109) T ss_dssp HHTCCCHHHHHHHHHHHHHCC--BCHHHHHHHH------TCCHHH----HHHHHHHHHHTT T ss_pred HHCCCCHHHHHHHHHHHCCCC--CCHHHHHHHH------CCCCCH----HHHHHHHHHHCC T ss_conf 985999999999999980488--8799999997------567018----999999999599 No 171 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=64.86 E-value=3.6 Score=20.16 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=29.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 21242101234432112883400899998652876577766136889999998 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ..||..++.+|.+|..+++..++-.+|++.+. .+..++--.|.+|-+ T Consensus 37 ~glt~~q~~vL~~L~~~~~~~it~~eLa~~l~------~~~~~~sr~l~~L~~ 83 (148) T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFG------RRGASITSMLQGLEK 83 (148) T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------------CHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC------CCHHHHHHHHHHHHH T ss_conf 59899999999999937999939999999989------778589999999998 No 172 >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Probab=64.22 E-value=4.8 Score=19.38 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.1 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 321242101234432112883400899998652876577766136889999998 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ...||..++.+|..+..++| ++-.+|++.+ ..+..++-..|.+|-+ T Consensus 32 ~~glt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~vs~~i~~L~~ 77 (143) T 3oop_A 32 SYDVTPEQWSVLEGIEANEP--ISQKEIALWT------KKDTPTVNRIVDVLLR 77 (143) T ss_dssp TSSSCHHHHHHHHHHHHHSS--EEHHHHHHHH------TCCHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 66999999999999986899--7999999998------9699799999999975 No 173 >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 Probab=64.21 E-value=3.9 Score=19.97 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=40.2 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 223321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ...-+.+|+.-..||+.|.++++..+|-++|.+.+-.. ...++.. .|||--+.|.+.+ T Consensus 10 k~~Glr~T~qR~~Il~~L~~~~~~h~sa~eI~~~l~~~-~~~i~~~----TVYR~L~~L~e~g 67 (136) T 1mzb_A 10 RKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLA----TVYRVLTQFEAAG 67 (136) T ss_dssp HHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHH----HHHHHHHHHHHHT T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCHH----HHHHHHHHHHHCC T ss_conf 98699979899999999985899999999999999976-8898889----9999999999689 No 174 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=64.21 E-value=7.1 Score=18.34 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=13.1 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 24210123443211288340089999865 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ||..++.+|..|..+++ .++-.+|.+.+ T Consensus 35 lt~~q~~iL~~l~~~~~-~~t~~eL~~~~ 62 (146) T 2fbh_A 35 LSQARWLVLLHLARHRD-SPTQRELAQSV 62 (146) T ss_dssp CTTTHHHHHHHHHHCSS-CCBHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCC-CCCHHHHHHHH T ss_conf 89999999999986799-99999999998 No 175 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=62.49 E-value=5.9 Score=18.85 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=18.0 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 32124210123443211288340089999865 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ...||..+|.+|.+|..+++ ++-.+|++.+ T Consensus 42 ~~gLt~~q~~vL~~l~~~~~--~~~~eLa~~l 71 (153) T 2pex_A 42 ALDLTYPQYLVMLVLWETDE--RSVSEIGERL 71 (153) T ss_dssp TTTCCHHHHHHHHHHHHSCS--EEHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 76979999999999984799--8999999998 No 176 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=62.05 E-value=6.5 Score=18.57 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=14.1 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 124210123443211288340089999865 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) .||..+|.+|..|..+++ .++-.+|++.+ T Consensus 44 glt~~q~~vL~~L~~~~~-~~t~~~La~~~ 72 (160) T 3boq_A 44 GLSLAKFDAMAQLARNPD-GLSMGKLSGAL 72 (160) T ss_dssp SCCHHHHHHHHHHHHCTT-CEEHHHHHHHC T ss_pred CCCHHHHHHHHHHHHCCC-CCCHHHHHHHH T ss_conf 929999999999986899-99899999998 No 177 >3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis} Probab=61.97 E-value=8.1 Score=18.00 Aligned_cols=22 Identities=0% Similarity=0.001 Sum_probs=8.4 Q ss_pred HHHHHHHCCCCC-CCCCEEEECC Q ss_conf 999998601456-7771577868 Q gi|254780526|r 194 ISKLRKKLRNKL-GFDPVDSKRF 215 (223) Q Consensus 194 I~rLRkKL~~~~-~~~~I~tvrg 215 (223) ..+|.++|.... ....++|.-| T Consensus 219 f~~l~~~L~~~~~~~~~~e~~~g 241 (247) T 3kfw_X 219 YHDFATAMAKRRDATQLLEVTEG 241 (247) T ss_dssp HHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHHHHCCCHHHHHHHHCCC T ss_conf 99999997620558887775358 No 178 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=61.89 E-value=6.4 Score=18.62 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=22.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2124210123443211288340089999865287657776613688999999 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) ..||..+|.+|.+|..+++ .++-.+|++.+ ..+..++.-.|.+|- T Consensus 49 ~gLt~~q~~vL~~L~~~~~-~~t~~eLa~~l------~i~~stvsr~v~~L~ 93 (166) T 3deu_A 49 LELTQTHWVTLHNIHQLPP-DQSQIQLAKAI------GIEQPSLVRTLDQLE 93 (166) T ss_dssp TTCCHHHHHHHHHHHHSCS-SEEHHHHHHHH------TSCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC-CCCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 6989999999999997698-97999999997------989989999999998 No 179 >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Probab=61.81 E-value=5.8 Score=18.89 Aligned_cols=17 Identities=0% Similarity=0.000 Sum_probs=9.4 Q ss_pred CCCCCCCCHHHHHHHHC Q ss_conf 32124210123443211 Q gi|254780526|r 146 VFPLPRRERRILEYLMA 162 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~ 162 (223) .+.||++=..++.-... T Consensus 100 ~l~LT~kG~~~~~~~~~ 116 (189) T 3nqo_A 100 NVKVTDLGKKVMVTCSR 116 (189) T ss_dssp EEEECHHHHHHHHHHHH T ss_pred EEEECHHHHHHHHHHHH T ss_conf 34678889999999999 No 180 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Probab=61.45 E-value=8.2 Score=17.94 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=39.8 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECH---HHHHHHHHHCCCCEEEEEEECCCCCC-----HHHHHHHHHHCCCCC Q ss_conf 6897098999999999999789889998285---89999998289967999900789662-----179998631013321 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE-----KVLELPRIIRAHSQV 73 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~---~~~~~l~~~~~~d~~iid~~l~~~~~-----~g~~l~~~lr~~~~~ 73 (223) |||||-...+...+..+|++.|+.|.++... +.........++|-+++- +.|+. ...+..+.. ...+ T Consensus 3 iliiD~~dSFt~Niv~~l~~~g~~v~V~~~~~~~~~~~~~~~~~~~dgiILs---gGPg~p~~~~~~~~~~~~~--~~~i 77 (192) T 1i1q_B 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLS---PGPGVPSEAGCMPELLTRL--RGKL 77 (192) T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEEC---CCSSCGGGSTTHHHHHHHH--BTTB T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEE---CCCCCCCCCCCCHHHHHHH--HCCC T ss_conf 9999788827999999999789907999899877367999983496969981---9998714331337999998--5699 Q ss_pred CEECCC Q ss_conf 000024 Q gi|254780526|r 74 PLIGIS 79 (223) Q Consensus 74 pII~lt 79 (223) ||+=+. T Consensus 78 PiLGIC 83 (192) T 1i1q_B 78 PIIGIC 83 (192) T ss_dssp CEEEET T ss_pred CHHHHC T ss_conf 814538 No 181 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=60.65 E-value=6.7 Score=18.52 Aligned_cols=44 Identities=7% Similarity=0.195 Sum_probs=25.7 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2124210123443211288340089999865287657776613688999999 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) ..||..++.+|..+..+++ ++-.+|++.+ ..+..++...+.+|- T Consensus 30 ~~lt~~q~~vL~~l~~~~~--~t~~ela~~~------~~~~~~vs~~l~~L~ 73 (138) T 1jgs_A 30 LDITAAQFKVLCSIRCAAC--ITPVELKKVL------SVDLGALTRMLDRLV 73 (138) T ss_dssp TTSCHHHHHHHHHHHHHSS--BCHHHHHHHH------TCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 5969999999999987799--8999999998------978879999999998 No 182 >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Probab=60.41 E-value=8.5 Score=17.84 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=40.4 Q ss_pred CCCCCCHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 12421012344321-128834008999986528765777661368899999986014567 Q gi|254780526|r 148 PLPRRERRILEYLM-ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 148 ~LT~~E~~lL~~L~-~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) .|+++|..++.+-. -+.+++.|-.+|...+ .++...|...-.+-.+||+.... T Consensus 5 ~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~l------gvS~erVrqie~~Al~kLr~~~~ 58 (68) T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQF------DVTRERIRQIEAKALRKLRHPSR 58 (68) T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHGGGSCCG T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 4999999999998389999977899999998------96999999999999999882678 No 183 >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Probab=60.02 E-value=8.7 Score=17.78 Aligned_cols=80 Identities=16% Similarity=0.034 Sum_probs=46.8 Q ss_pred EECHHHHH-HHHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHCC-CCCCEECCCCCCC- Q ss_conf 82858999-9998289967999900789--66217--------------------9998631013-3210000244321- Q gi|254780526|r 29 FNSLEFEE-WLQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRAH-SQVPLIGISDYPS- 83 (223) Q Consensus 29 ~~~~~~~~-~l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~-~~~pII~lt~~~~- 83 (223) +.+.+... .+......-++++.+.+|. |-.|| +++++.+|+. ..+|+++++..+. T Consensus 27 ~P~~~~~~~~l~~l~~~GaD~iEiGiPfSDP~aDGpvIq~a~~~al~~g~~~~~~~~~~~~~r~~~~~~plvlm~Y~N~i 106 (268) T 1qop_A 27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLV 106 (268) T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 79879999999999977999999789888865447999999999997898679987678876531788778999852511 Q ss_pred -----CCCCCCCCCCCCEEEEECCCCCCCC Q ss_conf -----0000111222010001023333321 Q gi|254780526|r 84 -----LQTTLDFFDSGVDDVVNKPIHHREI 108 (223) Q Consensus 84 -----~~~~i~~l~~GAddyl~KP~~~~eL 108 (223) +...-++-++|+|+.|.-..-++|- T Consensus 107 ~~~G~~~f~~~~~~~Gv~GliipDlp~ee~ 136 (268) T 1qop_A 107 FNNGIDAFYARCEQVGVDSVLVADVPVEES 136 (268) T ss_dssp HTTCHHHHHHHHHHHTCCEEEETTCCGGGC T ss_pred CCCCHHHHHHHHHHCCCCEEECCCCCHHHH T ss_conf 237878999999974986665158885666 No 184 >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Probab=59.66 E-value=6.7 Score=18.51 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=36.2 Q ss_pred CCCCCCCCCCCHHHHHHHHCC--CCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 223321242101234432112--88340-08999986528765777661368899999986 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMAN--RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~--~g~~v-sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) +=+.+.||..|+.++-.|+.. .|..+ |-+.|++.+ ..+.++|..++.+|.+| T Consensus 24 ~y~~lgLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~------g~s~~~v~~~l~~L~~~ 78 (128) T 2vn2_A 24 HYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERM------TVSAAECMEMVRRLLQK 78 (128) T ss_dssp TTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTS------SSCHHHHHHHHHHHHHT T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 89883989999999999999987599999999999895------94999999999999988 No 185 >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Probab=59.35 E-value=8.4 Score=17.87 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=25.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 212421012344321128834008999986528765777661368899999 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rL 197 (223) ..||..|+.+|.+|..+++ ++-.+|++.+ .++..++-..|.+| T Consensus 36 ~glt~~q~~vL~~L~~~~~--~t~~~la~~l------~i~~~~vsr~l~~L 78 (148) T 3nrv_A 36 FGIGMTEWRIISVLSSASD--CSVQKISDIL------GLDKAAVSRTVKKL 78 (148) T ss_dssp GTCCHHHHHHHHHHHHSSS--BCHHHHHHHH------TCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHH T ss_conf 4989999999999997799--7999999998------96998999999998 No 186 >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Probab=58.95 E-value=1.7 Score=22.25 Aligned_cols=60 Identities=23% Similarity=0.194 Sum_probs=27.3 Q ss_pred HCCCCEEEEEEECCCCCCHH------------HHHHHHHHCCCCCCEECC-CCC-CCCCCCC-CCCCCCCEEEEE Q ss_conf 28996799990078966217------------999863101332100002-443-2100001-112220100010 Q gi|254780526|r 41 SAREDVSAIEAFLIGKGEKV------------LELPRIIRAHSQVPLIGI-SDY-PSLQTTL-DFFDSGVDDVVN 100 (223) Q Consensus 41 ~~~~d~~iid~~l~~~~~~g------------~~l~~~lr~~~~~pII~l-t~~-~~~~~~i-~~l~~GAddyl~ 100 (223) ....+++.+++++.-|...+ -++.+..|+..+.|+.+- +.. .+..+.. .+.++|+|.... T Consensus 121 ~~~~~~d~ielN~~cP~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~vkl~~~~~~~~~~~~~~~~~g~~~~~~ 195 (311) T 1ep3_A 121 GDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311) T ss_dssp TTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE T ss_pred HHCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 641797667304578843330223256999999999999850368703215866332799999999839877999 No 187 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=58.92 E-value=3 Score=20.70 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=36.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 2124210123443211288340--089999865287657776613688999999860145 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRV--AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~v--sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~ 204 (223) -.||+.|..|..++..|+..+. |=.+|++.. .+++-| |.|.=|||+=. T Consensus 13 ~~ls~se~~Ia~yil~~~~~i~~~si~elA~~~------~VS~aT----i~Rf~kklGf~ 62 (107) T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQL------ETSSTS----IIRLSKKVTPG 62 (107) T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHH------TSCHHH----HHHHHHHHSTT T ss_pred HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHH------CCCHHH----HHHHHHHHCCC T ss_conf 663999999999999599999776599999897------989989----99999995889 No 188 >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89} Probab=58.64 E-value=6.8 Score=18.44 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=24.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 21242101234432112883400899998652876577766136889999998 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ..||..++.+|..|..+++ ++-.+|++.+ ..+..|+-..|.+|-+ T Consensus 27 ~glt~~q~~vL~~l~~~~~--~t~~~la~~l------~i~~~tvs~~v~~L~~ 71 (142) T 3bdd_A 27 LGISLTRYSILQTLLKDAP--LHQLALQERL------QIDRAAVTRHLKLLEE 71 (142) T ss_dssp HSSCHHHHHHHHHHHHHCS--BCHHHHHHHH------TCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 4969999999999987799--8999999998------9698689999999985 No 189 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=58.21 E-value=8 Score=18.02 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=3.9 Q ss_pred HHHHHHHCCCC Q ss_conf 99863101332 Q gi|254780526|r 62 ELPRIIRAHSQ 72 (223) Q Consensus 62 ~l~~~lr~~~~ 72 (223) ++.+.+.+.+. T Consensus 87 ~~~~~l~~~p~ 97 (162) T 2p5v_A 87 DFAASVRKWPE 97 (162) T ss_dssp HHHHHHTTCTT T ss_pred HHHHHHHHCCC T ss_conf 99999984887 No 190 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=58.17 E-value=4.7 Score=19.49 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=38.7 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 23321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ..-+.+|+.-..||++|.++.++.+|-++|++.+-.. +..++..| |||.-+.|...+ T Consensus 10 ~~G~r~T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~-~~~i~~aT----VYR~L~~l~~~g 66 (150) T 2w57_A 10 DAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDL-GEEIGLAT----VYRVLNQFDDAG 66 (150) T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHH----HHHHHHHHHHTT T ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCHHH----HHHHHHHHHHHH T ss_conf 8699989999999999983899999999999999861-88867799----999999998754 No 191 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=57.97 E-value=7.1 Score=18.32 Aligned_cols=27 Identities=7% Similarity=0.298 Sum_probs=10.5 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 24210123443211288340089999865 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ||..++.+|..|..+++ +|-.+|++.+ T Consensus 39 lt~~q~~vL~~L~~~~~--~t~~~La~~l 65 (154) T 2qww_A 39 LTIQQLAMINVIYSTPG--ISVADLTKRL 65 (154) T ss_dssp CCHHHHHHHHHHHHSTT--EEHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 89999999999997799--8999999997 No 192 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Probab=57.89 E-value=9.5 Score=17.55 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=32.7 Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCC------CCCCCCCCCCCCEEEEECCCCCC Q ss_conf 1799986310133210000244321------00001112220100010233333 Q gi|254780526|r 59 KVLELPRIIRAHSQVPLIGISDYPS------LQTTLDFFDSGVDDVVNKPIHHR 106 (223) Q Consensus 59 ~g~~l~~~lr~~~~~pII~lt~~~~------~~~~i~~l~~GAddyl~KP~~~~ 106 (223) +.+++++.+|+..++|++++|-.+. +...-++-++|+|+.+.--..++ T Consensus 67 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~~~f~~~~~~~Gv~g~iipDlp~e 120 (248) T 1geq_A 67 EAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF 120 (248) T ss_dssp HHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGG T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHH T ss_conf 999999999734698789980665012357999999998679857860578866 No 193 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=57.40 E-value=8.7 Score=17.78 Aligned_cols=13 Identities=0% Similarity=0.130 Sum_probs=4.8 Q ss_pred HHHHHHHCCCCCC Q ss_conf 9986310133210 Q gi|254780526|r 62 ELPRIIRAHSQVP 74 (223) Q Consensus 62 ~l~~~lr~~~~~p 74 (223) ++++.+.+++.++ T Consensus 12 ~Il~~L~~d~R~s 24 (152) T 2cg4_A 12 GILEALMGNARTA 24 (152) T ss_dssp HHHHHHHHCTTSC T ss_pred HHHHHHHHCCCCC T ss_conf 9999999848999 No 194 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=57.27 E-value=8.1 Score=17.98 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=10.4 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 24210123443211288340089999865 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ||..|+.+|..|..++| ++-.+|.+.+ T Consensus 41 Lt~~q~~iL~~l~~~~~--~t~~eLa~~l 67 (155) T 3cdh_A 41 LRVPEWRVLACLVDNDA--MMITRLAKLS 67 (155) T ss_dssp CCHHHHHHHHHHSSCSC--BCHHHHHHHT T ss_pred CCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 69999999999985799--6999999998 No 195 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=55.34 E-value=3.1 Score=20.64 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=41.6 Q ss_pred CEEEEEEECCC--CCCHH--------------------HHHHHHHHCCCCCCEECCCCCCC------CCCCCCCCCCCCE Q ss_conf 67999900789--66217--------------------99986310133210000244321------0000111222010 Q gi|254780526|r 45 DVSAIEAFLIG--KGEKV--------------------LELPRIIRAHSQVPLIGISDYPS------LQTTLDFFDSGVD 96 (223) Q Consensus 45 d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~~~~pII~lt~~~~------~~~~i~~l~~GAd 96 (223) -++++.+.+|. |-.|| +++++.+|+..++|+++++-.+. +...-++-++|+| T Consensus 42 gaDiiEiGiPfSDP~aDGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~p~vlM~Y~N~~~~~G~~~F~~~~~~aGvd 121 (271) T 1ujp_A 42 YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGAT 121 (271) T ss_dssp GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCC T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHCCCC T ss_conf 99989968998886655699999998888679966889999999862379755999844424416737888999873984 Q ss_pred EEEECCCCCC Q ss_conf 0010233333 Q gi|254780526|r 97 DVVNKPIHHR 106 (223) Q Consensus 97 dyl~KP~~~~ 106 (223) +.|.--.-++ T Consensus 122 G~iipDLP~e 131 (271) T 1ujp_A 122 GVILPDLPPD 131 (271) T ss_dssp EEECTTCCGG T ss_pred EEECCCCCHH T ss_conf 2324778522 No 196 >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 2ogu_A 2fy8_A 3kxd_A Probab=55.24 E-value=10 Score=17.28 Aligned_cols=89 Identities=10% Similarity=0.058 Sum_probs=47.9 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECH-HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC Q ss_conf 6897098999999999999789889998285-89999998289967999900789662179998631013-321000024 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~-~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt 79 (223) +.+||.|+...+. +...|+.+..-+.. ...+......+.+.+++.. + .+...+..+..+|.. ++++|++.. T Consensus 33 v~vi~~d~~~~~~----~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vii~~--~-~D~~n~~~~~~~r~~~~~~~ii~~~ 105 (234) T 2aef_A 33 VFVLAEDENVRKK----VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL--E-SDSETIHCILGIRKIDESVRIIAEA 105 (234) T ss_dssp EEEEESCGGGHHH----HHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECC--S-CHHHHHHHHHHHHHHCSSSEEEEEC T ss_pred CEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEE--C-CCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 7899889899999----9966984999826999999865867343999993--5-7312167887666516761499998 Q ss_pred CCCCCCCCCCCCCCCCEEEE Q ss_conf 43210000111222010001 Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVV 99 (223) Q Consensus 80 ~~~~~~~~i~~l~~GAddyl 99 (223) ...+ +.-....+|||..+ T Consensus 106 ~~~~--~~~~l~~~g~d~vi 123 (234) T 2aef_A 106 ERYE--NIEQLRMAGADQVI 123 (234) T ss_dssp SSGG--GHHHHHHHTCSEEE T ss_pred CCHH--HHHHHHCCCCCEEE T ss_conf 6856--75543005998998 No 197 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=54.85 E-value=11 Score=17.24 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=6.4 Q ss_pred HHHHHHHHCCCCCCE Q ss_conf 999863101332100 Q gi|254780526|r 61 LELPRIIRAHSQVPL 75 (223) Q Consensus 61 ~~l~~~lr~~~~~pI 75 (223) ..+++.+.+++..|. T Consensus 7 ~~Il~~L~~d~r~s~ 21 (141) T 1i1g_A 7 KIILEILEKDARTPF 21 (141) T ss_dssp HHHHHHHHHCTTCCH T ss_pred HHHHHHHHHCCCCCH T ss_conf 999999998489899 No 198 >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Probab=54.80 E-value=11 Score=17.23 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=47.0 Q ss_pred HHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 999999828996799990078966-217999863101332100002443210000111222010001023 Q gi|254780526|r 34 FEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223) Q Consensus 34 ~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223) .+..+.......+.++|++-...+ ..-+++++.+.+...+|+-+-.+-.+.++....+++||+-.+.-. T Consensus 35 ~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~e~~~~~l~~Ga~kVvigs 104 (253) T 1thf_D 35 LGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253) T ss_dssp HHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHCCCCEEEECH T ss_conf 9999998699889998412433464338999999997359975874557522217889874999999884 No 199 >3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str} Probab=54.73 E-value=8.6 Score=17.83 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=32.2 Q ss_pred EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEE---CCCCCCCCCCCCCCCCCCCEEEEECCCC Q ss_conf 9828589999998289967999900789662179998631013321000---0244321000011122201000102333 Q gi|254780526|r 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIH 104 (223) Q Consensus 28 ~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII---~lt~~~~~~~~i~~l~~GAddyl~KP~~ 104 (223) +..+.+..+........-+.++..++ .+--++.+.+++.....++ ++.+.+.++..+ +||.|-+. T Consensus 15 Avr~~~~le~al~s~~~~iflL~g~I----~~l~~iv~~~k~~gK~vfVHiDLI~GL~~d~~av--------~fL~~~~~ 82 (192) T 3kts_A 15 AAHNQKDMEKILELDLTYMVMLETHV----AQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAI--------DFLCTEIC 82 (192) T ss_dssp EESSSHHHHHHTTSSCCEEEECSEET----TTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHH--------HHHHHTTC T ss_pred EECCHHHHHHHHCCCCCEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH--------HHHHHHCC T ss_conf 83788999999758998999953718----7799999999987998999853167778888999--------99998428 Q ss_pred CCCCC Q ss_conf 33210 Q gi|254780526|r 105 HREIL 109 (223) Q Consensus 105 ~~eL~ 109 (223) +.=++ T Consensus 83 ~dGII 87 (192) T 3kts_A 83 PDGII 87 (192) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99899 No 200 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=54.08 E-value=9.1 Score=17.65 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=25.0 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 1242101234432112883400899998652876577766136889999998 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) .||..++.+|.++..++| ++-.+|++.+ .++..++-..|.+|-+ T Consensus 49 gLt~~q~~iL~~l~~~~~--~t~~~La~~~------~~~~~~vsr~v~~L~~ 92 (162) T 3cjn_A 49 GLSTAKMRALAILSAKDG--LPIGTLGIFA------VVEQSTLSRALDGLQA 92 (162) T ss_dssp TCCHHHHHHHHHHHHSCS--EEHHHHHHHH------TCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 959999999999984799--8999999998------9798899999999986 No 201 >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Probab=54.05 E-value=8.3 Score=17.91 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=11.2 Q ss_pred CCCCCCCCCHHHHHHHHC Q ss_conf 332124210123443211 Q gi|254780526|r 145 EVFPLPRRERRILEYLMA 162 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~ 162 (223) ..+.||++-..++.-+.. T Consensus 128 ~~l~LT~~G~~l~~~~~~ 145 (181) T 2fbk_A 128 ASIRLTPQGRALVTHLLP 145 (181) T ss_dssp CCBEECHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHH T ss_conf 211328889999999999 No 202 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=54.00 E-value=10 Score=17.41 Aligned_cols=47 Identities=9% Similarity=0.261 Sum_probs=28.6 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 32124210123443211288340089999865287657776613688999999860145 Q gi|254780526|r 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~ 204 (223) ...||..|+.+|..|..+++ ++-.+|++.+ ..+..+ ++++-++|... T Consensus 37 ~~~lt~~q~~vL~~l~~~~~--~t~~~La~~l------~~~~~~----vs~~l~~L~~~ 83 (150) T 2rdp_A 37 NYPITPPQFVALQWLLEEGD--LTVGELSNKM------YLACST----TTDLVDRMERN 83 (150) T ss_dssp TSSSCHHHHHHHHHHHHHCS--BCHHHHHHHH------TCCHHH----HHHHHHHHHHT T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHH----HHHHHHHHHCC T ss_conf 77979999999999997799--5999999998------968878----99999999718 No 203 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=53.23 E-value=11 Score=17.08 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=33.3 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEC Q ss_conf 899679999007896621799986310133210000244321000011122201000102 Q gi|254780526|r 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 (223) Q Consensus 42 ~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~K 101 (223) .-...+=+..+-..= ...++-++.+|+..++||+.=-=--++.+..++..+|||.-+.= T Consensus 74 ~gA~aiSVlTe~~~F-~Gs~~dL~~v~~~v~~PiLrKDFIid~~QI~ea~~~GADavLLI 132 (247) T 1a53_A 74 RYAVGLSILTEEKYF-NGSYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLI 132 (247) T ss_dssp TTCSEEEEECCCTTT-CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEE T ss_pred CCCEEEEEECCCCCC-CCCHHHHHHHHHHHCCCEEHHCCCCCHHHHHHHHHHCCCHHHHH T ss_conf 598289996788888-99999999999860686421012388999999999466645688 No 204 >1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A Probab=52.66 E-value=11 Score=17.02 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=53.7 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCCEECCCCC Q ss_conf 098999999999999789889998285899999982899679999007896621799986310133-2100002443 Q gi|254780526|r 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDY 81 (223) Q Consensus 6 eDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~-~~pII~lt~~ 81 (223) =.++.+.+.+..+|...-|.+..+.+.++........+.+++++.+--..+ +...+..++.+.+ -.|+|++... T Consensus 16 l~s~~Laq~c~qwL~~dRY~l~~~~s~~efle~Le~~~e~IDCLVl~~~~~--~l~~~~~qL~~~GlLLPaVvvg~~ 90 (289) T 1r8j_A 16 VESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANP--SFRAVVQQLCFEGVVVPAIVVGDR 90 (289) T ss_dssp CCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTST--THHHHHHHHHHTTCCCCEEEESCC T ss_pred ECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHHHHHHCCCCCCEEEECCC T ss_conf 388899999998677885599844878899999984745677799971587--428999999965853557996157 No 205 >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Probab=51.80 E-value=12 Score=16.93 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=38.9 Q ss_pred HHHHHHHHHHHHCCCEEEE---EECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC--CCCCEECCCCCCCC Q ss_conf 9999999999978988999---828589999998289967999900789662179998631013--32100002443210 Q gi|254780526|r 10 LVKDGYIALFGDDGVSLEG---FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGISDYPSL 84 (223) Q Consensus 10 ~~~~~l~~~L~~~g~~v~~---~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~--~~~pII~lt~~~~~ 84 (223) .=+..+...|...||.|.. +.+.+++-.....+..+++++-.--.....-.-++++.+|+. +++||++= +.--. T Consensus 619 ~ga~~iA~~F~d~GfeV~~~~~f~TpeE~a~aA~e~~a~vvgics~d~~h~~lvp~l~~~Lk~~g~~~i~Vvvg-GviP~ 697 (762) T 2xij_A 619 RGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCG-GVIPP 697 (762) T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE-ESCCG T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCH T ss_conf 01999999998579028527877899999999997699999992687656889999999999669998679980-77887 Q ss_pred CCCCCCCCCCCEEEEE Q ss_conf 0001112220100010 Q gi|254780526|r 85 QTTLDFFDSGVDDVVN 100 (223) Q Consensus 85 ~~~i~~l~~GAddyl~ 100 (223) ++.-...++|+++++. T Consensus 698 ~d~~~l~~aGV~~if~ 713 (762) T 2xij_A 698 QDYEFLFEVGVSNVFG 713 (762) T ss_dssp GGHHHHHHHTCCEEEC T ss_pred HHHHHHHHCCCCEEEC T ss_conf 8899999869887839 No 206 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=51.65 E-value=11 Score=17.17 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=28.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 212421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ..||..++.+|..+..++| +|-.+|.+.+ .++..+ ++++-++|.. T Consensus 45 ~glt~~q~~iL~~l~~~~~--~t~~~La~~l------~i~~~~----vs~~v~~L~~ 89 (162) T 2fa5_A 45 YGMAIPEWRVITILALYPG--SSASEVSDRT------AMDKVA----VSRAVARLLE 89 (162) T ss_dssp HCCCHHHHHHHHHHHHSTT--CCHHHHHHHH------TCCHHH----HHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHH----HHHHHHHHHH T ss_conf 4979999999999986799--8999999997------878715----9999999985 No 207 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=51.44 E-value=7.6 Score=18.14 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=31.7 Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 42101234432112883400899998652876577766136889999998 Q gi|254780526|r 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 150 T~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) ++..+.||.+|..+++ .+-.+|.+.+ .++..++-.|+.+|.+ T Consensus 15 ~p~r~~IL~~L~~~~~--~t~~eLa~~l------~is~~~vs~~l~~Le~ 56 (100) T 1ub9_A 15 NPVRLGIMIFLLPRRK--APFSQIQKVL------DLTPGNLDSHIRVLER 56 (100) T ss_dssp SHHHHHHHHHHHHHSE--EEHHHHHHHT------TCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 9999999999851899--8399999998------9199899999999985 No 208 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=51.34 E-value=11 Score=17.20 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=22.7 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2124210123443211288340089999865287657776613688999999 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) ..||..|+.+|..+..+++ .+-.+|++.+ ..+..++-..+.+|- T Consensus 33 ~glt~~q~~vL~~i~~~~~--~t~~~la~~l------~~~~~~vs~~l~~L~ 76 (142) T 2bv6_A 33 YNLTYPQFLVLTILWDESP--VNVKKVVTEL------ALDTGTVSPLLKRME 76 (142) T ss_dssp HTCCHHHHHHHHHHHHSSE--EEHHHHHHHT------TCCTTTHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 6979999999999997799--8999999998------979879999999999 No 209 >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Probab=50.86 E-value=11 Score=17.02 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=42.5 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 223321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 143 ~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ...-+.+|+.-..+|++|..+.+..+|-++|.+.+-.. ...++.. .|||--+.|.+.+ T Consensus 9 k~~glr~T~qR~~Il~~l~~~~~~h~sa~ei~~~l~~~-~~~i~~a----TVYR~L~~l~e~g 66 (83) T 2fu4_A 9 KKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLA----TVYRVLNQFDDAG 66 (83) T ss_dssp HHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHH----HHHHHHHHHHHHT T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHHCC T ss_conf 98699969999999999995899999999999998751-8998760----4999999999889 No 210 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=50.28 E-value=10 Score=17.37 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=14.7 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 124210123443211288340089999865 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) .||..++.+|.+|..++| .+|-.+|++.+ T Consensus 32 ~ls~~q~~vL~~i~~~~g-~~t~~ela~~~ 60 (147) T 2hr3_A 32 PVQFSQLVVLGAIDRLGG-DVTPSELAAAE 60 (147) T ss_dssp HHHHHHHHHHHHHHHTTS-CBCHHHHHHHT T ss_pred CCCHHHHHHHHHHHHCCC-CCCHHHHHHHH T ss_conf 989999999999997699-98999999998 No 211 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=50.09 E-value=12 Score=16.84 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=8.6 Q ss_pred CCCCCCCCHHHHHHHHCC Q ss_conf 321242101234432112 Q gi|254780526|r 146 VFPLPRRERRILEYLMAN 163 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~~ 163 (223) .|.||.+=.+++.-+... T Consensus 105 ~i~LT~~G~~l~~~~~~~ 122 (207) T 2fxa_A 105 YVQLTEEGTEVFWSLLEE 122 (207) T ss_dssp EEEECHHHHHHHHHHHHH T ss_pred EEEECHHHHHHHHHHHHH T ss_conf 988898899999999999 No 212 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=50.09 E-value=13 Score=16.77 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=10.7 Q ss_pred CCCCHHHHHHHHHHCCCCCCEE Q ss_conf 9662179998631013321000 Q gi|254780526|r 55 GKGEKVLELPRIIRAHSQVPLI 76 (223) Q Consensus 55 ~~~~~g~~l~~~lr~~~~~pII 76 (223) ++..| .++++.+.+++.+|+- T Consensus 5 lD~~D-~~IL~~L~~d~R~s~~ 25 (151) T 2cyy_A 5 LDEID-KKIIKILQNDGKAPLR 25 (151) T ss_dssp CCHHH-HHHHHHHHHCTTCCHH T ss_pred HHHHH-HHHHHHHHHCCCCCHH T ss_conf 72899-9999999984899999 No 213 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=49.33 E-value=12 Score=16.94 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=26.2 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2124210123443211288340089999865287657776613688999999 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) ..||+.|+.+|..+..+++ .|-.+|++.+ ..+..++-..|.+|- T Consensus 29 ~gLt~~q~~vL~~i~~~~~--~t~~ela~~~------~~~~~~vs~~v~~L~ 72 (145) T 2a61_A 29 FGITPAQFDILQKIYFEGP--KRPGELSVLL------GVAKSTVTGLVKRLE 72 (145) T ss_dssp HTCCHHHHHHHHHHHHHCC--BCHHHHHHHH------TCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHH T ss_conf 5979999999999987799--8999999998------979878999999985 No 214 >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A Probab=49.33 E-value=13 Score=16.69 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=54.6 Q ss_pred HHHHHHHHHCCCEEEEEE-C-HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH---CCCCCCEECCCCCCCCCCC Q ss_conf 999999997898899982-8-5899999982899679999007896621799986310---1332100002443210000 Q gi|254780526|r 13 DGYIALFGDDGVSLEGFN-S-LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTT 87 (223) Q Consensus 13 ~~l~~~L~~~g~~v~~~~-~-~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr---~~~~~pII~lt~~~~~~~~ 87 (223) ..++..|++-...+-++. . ....-.+....-+|++++|.- .-..+--++...+| ...-.|++=+.. .+.... T Consensus 28 N~~k~~L~~G~~~~G~~~~~~sp~~~Ei~~~~GfDfv~ID~E--Hg~~~~~~~~~~i~aa~~~~~~~iVRvp~-~~~~~i 104 (287) T 2v5j_A 28 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGE--HAPNNVQTVLTQLQAIAPYPSQPVVRPSW-NDPVQI 104 (287) T ss_dssp CHHHHHHHTTCCEEEEEECSCCHHHHHHHHTSCCSEEEEESS--SSSCCHHHHHHHHHHHTTSSSEEEEECSS-SCHHHH T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCHHHH T ss_conf 899999987998799875789969999997389899998067--89899999999999875359973554678-999999 Q ss_pred CCCCCCCCEEEEECCCCCCCCC Q ss_conf 1112220100010233333210 Q gi|254780526|r 88 LDFFDSGVDDVVNKPIHHREIL 109 (223) Q Consensus 88 i~~l~~GAddyl~KP~~~~eL~ 109 (223) .++|++||++.+..=++..|=. T Consensus 105 ~r~LD~Ga~GIivP~V~s~eea 126 (287) T 2v5j_A 105 KQLLDVGTQTLLVPMVQNADEA 126 (287) T ss_dssp HHHHHTTCCEEEESCCCSHHHH T ss_pred HHHHHCCCCEEEECCCCCHHHH T ss_conf 9998379986794675999999 No 215 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=49.05 E-value=9.9 Score=17.43 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=12.5 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 124210123443211288340089999865 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) .||..++.+|..|..++| +|-.+|++.+ T Consensus 37 glt~~q~~vL~~l~~~~~--~t~~eLa~~~ 64 (147) T 1z91_A 37 NITYPQYLALLLLWEHET--LTVKKMGEQL 64 (147) T ss_dssp CCCHHHHHHHHHHHHHSE--EEHHHHHHTT T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 989999999999997799--4999999997 No 216 >2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A Probab=48.64 E-value=2.5 Score=21.24 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=35.0 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 12421012344321128834008999986528765777661368899999986014 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) .|++++.+++.+..-. | .|..+|++.+ .++..||.+.++|-++||+. T Consensus 135 ~L~~~~r~vl~l~~~~-g--~s~~eIA~~l------gis~~tV~~~l~ra~~kLr~ 181 (184) T 2q1z_A 135 RLPEAQRALIERAFFG-D--LTHRELAAET------GLPLGTIKSRIRLALDRLRQ 181 (184) T ss_dssp TSCHHHHHHHHHHHHS-C--CSSCCSTTTC------CCCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHC-C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHHH T ss_conf 4999999999999992-9--9999999998------93999999999999999999 No 217 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=48.40 E-value=13 Score=16.77 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=12.9 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 124210123443211288340089999865 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) .||..++.+|..|..+++ +|-.+|++.+ T Consensus 28 gls~~~~~iL~~l~~~~~--~t~~~la~~l 55 (145) T 3g3z_A 28 DLNYNLFAVLYTLATEGS--RTQKHIGEKW 55 (145) T ss_dssp TCCHHHHHHHHHHHHHCS--BCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 989999999999998799--4999999998 No 218 >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Probab=47.91 E-value=14 Score=16.55 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=10.4 Q ss_pred HHHHHHHHCCCCCCEECC Q ss_conf 999863101332100002 Q gi|254780526|r 61 LELPRIIRAHSQVPLIGI 78 (223) Q Consensus 61 ~~l~~~lr~~~~~pII~l 78 (223) .+-.+.+|+..+.|++.+ T Consensus 58 ~~~l~~ir~~~~~pv~~l 75 (232) T 3igs_A 58 IDNLRMTRSLVSVPIIGI 75 (232) T ss_dssp HHHHHHHHTTCCSCEEEE T ss_pred HHHHHHHHHHCCCCEEEE T ss_conf 999999998557617756 No 219 >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Probab=47.62 E-value=11 Score=17.04 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=52.2 Q ss_pred HHHHHHCCCEEEEEECH--HHHHHHHHHCCCCEEEEEEECCC-C--CCHHHHHHHH-HHC-CCCCCEECCCCCCCCCCCC Q ss_conf 99999789889998285--89999998289967999900789-6--6217999863-101-3321000024432100001 Q gi|254780526|r 16 IALFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIG-K--GEKVLELPRI-IRA-HSQVPLIGISDYPSLQTTL 88 (223) Q Consensus 16 ~~~L~~~g~~v~~~~~~--~~~~~l~~~~~~d~~iid~~l~~-~--~~~g~~l~~~-lr~-~~~~pII~lt~~~~~~~~i 88 (223) +..|-..||.|-.+.+. ..+..+.......+ +-+.-|- + |..--...+. +++ .+.+|||+=.+-....+.. T Consensus 117 ae~Lv~~GF~VlpY~~~D~~~ak~Le~~Gc~aV--MPl~sPIGsg~Gi~n~~~l~i~i~~~~~~vPvivDAGIG~pSdAa 194 (268) T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAALGTATV--MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAA 194 (268) T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHHHTCSCB--EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHH T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEE--EECHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHH T ss_conf 999985896899956878999999987698678--732424315764038878889998745778768635889989999 Q ss_pred CCCCCCCEEEEEC Q ss_conf 1122201000102 Q gi|254780526|r 89 DFFDSGVDDVVNK 101 (223) Q Consensus 89 ~~l~~GAddyl~K 101 (223) ++++.|+|..|.- T Consensus 195 ~aMElG~DaVLvN 207 (268) T 2htm_A 195 EVMELGLDAVLVN 207 (268) T ss_dssp HHHHTTCCEEEES T ss_pred HHHHCCCCEEEEC T ss_conf 9997479899976 No 220 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=47.50 E-value=13 Score=16.63 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=11.3 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 24210123443211288340089999865 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ||..++.+|..|..++|. +-.+|++.+ T Consensus 38 lt~~q~~vL~~l~~~~~~--t~~~La~~l 64 (152) T 3bj6_A 38 VTVGQRAILEGLSLTPGA--TAPQLGAAL 64 (152) T ss_dssp CCHHHHHHHHHHHHSTTE--EHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCC--CHHHHHHHH T ss_conf 799999999999987998--999999998 No 221 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=47.48 E-value=14 Score=16.51 Aligned_cols=79 Identities=19% Similarity=0.076 Sum_probs=45.9 Q ss_pred EECHHHH-HHHHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHC-CCCCCEECCCCCCCC Q ss_conf 8285899-99998289967999900789--66217--------------------999863101-332100002443210 Q gi|254780526|r 29 FNSLEFE-EWLQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRA-HSQVPLIGISDYPSL 84 (223) Q Consensus 29 ~~~~~~~-~~l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~-~~~~pII~lt~~~~~ 84 (223) +.+.+.. +.+......-++++.+.+|. |-.|| +++++.+|. .+++|++++|-.+.. T Consensus 30 ~P~~e~s~~~l~~l~~~G~D~iEiGiPfSDPvaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p~vlM~Y~N~i 109 (271) T 3nav_A 30 DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLV 109 (271) T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHH T ss_conf 89878999999999976999999789988877768999999888776486076676677664202678887999750466 Q ss_pred ------CCCCCCCCCCCEEEEECCCCCCC Q ss_conf ------00011122201000102333332 Q gi|254780526|r 85 ------QTTLDFFDSGVDDVVNKPIHHRE 107 (223) Q Consensus 85 ------~~~i~~l~~GAddyl~KP~~~~e 107 (223) ...-++-++|+|+.|.-..-++| T Consensus 110 ~~~G~e~F~~~~~~~Gv~GviipDLp~ee 138 (271) T 3nav_A 110 YARGIDDFYQRCQKAGVDSVLIADVPTNE 138 (271) T ss_dssp HHTCHHHHHHHHHHHTCCEEEETTSCGGG T ss_pred HHCCHHHHHHHHHHCCCCEEEECCCCHHH T ss_conf 55289999999987699489945898156 No 222 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=47.42 E-value=12 Score=16.97 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=23.1 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 1242101234432112883400899998652876577766136889999998 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) .||..|+.+|..|..+++ .+-.+|++.+ ..+..++-..|.+|-+ T Consensus 33 glt~~q~~vL~~l~~~~~--~~~~~la~~l------~i~~~~vs~~i~~L~~ 76 (142) T 2fbi_A 33 GLTEQQWRVIRILRQQGE--MESYQLANQA------CILRPSMTGVLARLER 76 (142) T ss_dssp TCCHHHHHHHHHHHHHCS--EEHHHHHHHT------TCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 989999999999998799--7999999997------9898899999999995 No 223 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=47.42 E-value=14 Score=16.51 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=10.1 Q ss_pred HHHHHHHHCCCCCCEECC Q ss_conf 999863101332100002 Q gi|254780526|r 61 LELPRIIRAHSQVPLIGI 78 (223) Q Consensus 61 ~~l~~~lr~~~~~pII~l 78 (223) ..+++.+++++.+|+-=+ T Consensus 12 ~~Il~~L~~d~R~s~~ei 29 (151) T 2dbb_A 12 MQLVKILSENSRLTYREL 29 (151) T ss_dssp HHHHHHHHHCTTCCHHHH T ss_pred HHHHHHHHHCCCCCHHHH T ss_conf 999999988599999999 No 224 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Probab=47.28 E-value=9.7 Score=17.48 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=33.1 Q ss_pred CCCCCCCCCHHHHHHHHCC--CCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 3321242101234432112--8834-008999986528765777661368899999986 Q gi|254780526|r 145 EVFPLPRRERRILEYLMAN--RGKR-VAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~--~g~~-vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) ..+.||..|+.++..|+.. .|.. -|-+.|++.+ ..+.++|..++..|-+| T Consensus 26 ~~lgLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~------g~s~~~v~~~l~~L~~k 78 (135) T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGM------SISVEECTNRLRMFIQK 78 (135) T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS------SSCHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 663999899999999999887699798999999895------94999999999999988 No 225 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=46.92 E-value=14 Score=16.46 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.2 Q ss_pred HHHHHHHHCCCCCCEECC Q ss_conf 999863101332100002 Q gi|254780526|r 61 LELPRIIRAHSQVPLIGI 78 (223) Q Consensus 61 ~~l~~~lr~~~~~pII~l 78 (223) .++++.+.+++.+|+--| T Consensus 30 ~~IL~~L~~d~R~s~~~i 47 (171) T 2e1c_A 30 KKIIKILQNDGKAPLREI 47 (171) T ss_dssp HHHHHHHHHCTTCCHHHH T ss_pred HHHHHHHHHCCCCCHHHH T ss_conf 999999998389999999 No 226 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=46.67 E-value=13 Score=16.61 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=14.1 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 124210123443211288340089999865 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) .||..|+.+|.+|..+++ ++-.+|++.+ T Consensus 41 ~ls~~q~~vL~~l~~~~~--~t~~eLa~~l 68 (154) T 2eth_A 41 DMKTTELYAFLYVALFGP--KKMKEIAEFL 68 (154) T ss_dssp HSBHHHHHHHHHHHHHCC--BCHHHHHHHT T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 999999999999998699--4999999998 No 227 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=45.70 E-value=14 Score=16.54 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=8.4 Q ss_pred CCCCCCCCHHHHHHHHC Q ss_conf 32124210123443211 Q gi|254780526|r 146 VFPLPRRERRILEYLMA 162 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~~ 162 (223) .+.||++=..++.-+.. T Consensus 102 ~i~LT~~G~~~~~~~~~ 118 (168) T 2nyx_A 102 LAALTKRGRDVVRQVTE 118 (168) T ss_dssp EEEECHHHHHHHHHHHH T ss_pred EEEECHHHHHHHHHHHH T ss_conf 88778879999999999 No 228 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=45.20 E-value=12 Score=16.94 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=30.0 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 24210123443211288340089999865287657776613688999999 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLR 198 (223) +|+....||++|.+++. .+-.+|+..+ | ...++.+|.-|++.|. T Consensus 11 M~~~D~rILE~L~e~g~--~t~~eIA~~l-g---i~~S~~~Vs~rl~~L~ 54 (111) T 3b73_A 11 MTIWDDRILEIIHEEGN--GSPKELEDRD-E---IRISKSSVSRRLKKLA 54 (111) T ss_dssp CCHHHHHHHHHHHHHSC--BCHHHHHTST-T---CCSCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCC--CCHHHHHHHH-C---CCCCHHHHHHHHHHHH T ss_conf 46019999999998499--9999999986-8---8847999999999998 No 229 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=43.93 E-value=16 Score=16.17 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=31.8 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 1242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) .||..++.+|..+..++| ++-.+|++.+ ..+..+ ++++-++|...+ T Consensus 35 glt~~q~~vL~~l~~~~~--~t~~eLa~~~------~~~~~~----vs~~i~~L~~~g 80 (140) T 2nnn_A 35 GLTPTQWAALVRLGETGP--CPQNQLGRLT------AMDAAT----IKGVVERLDKRG 80 (140) T ss_dssp CCCHHHHHHHHHHHHHSS--BCHHHHHHHT------TCCHHH----HHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCCCC----HHHHHHHHHHCC T ss_conf 989999999999998799--0999999987------857352----999999997389 No 230 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=43.71 E-value=16 Score=16.18 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=17.4 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 2124210123443211288340089999865 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ..||..++.+|..|..++| .|-.+|++.+ T Consensus 32 ~glt~~q~~vL~~l~~~~~--~t~~ela~~l 60 (140) T 3hsr_A 32 YDLTYTGYIVLMAIENDEK--LNIKKLGERV 60 (140) T ss_dssp GTCCHHHHHHHHHSCTTCE--EEHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH T ss_conf 5999999999999986799--8999999998 No 231 >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Probab=43.30 E-value=16 Score=16.11 Aligned_cols=70 Identities=11% Similarity=-0.099 Sum_probs=46.1 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 8999999828996799990078966217999863101332100002443210000111222010001023 Q gi|254780526|r 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223) Q Consensus 33 ~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223) +.+..+.......+.++|++--....+-..+.+.+.+...+||-+=.+-.+.++.-+.|+.||+--+.-. T Consensus 36 ~~a~~~~~~g~d~l~ivDLd~~~~~~~~~~~i~~i~~~~~~pi~vgGGirs~~~~~~~l~~Ga~kvii~s 105 (244) T 1vzw_A 36 EAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT 105 (244) T ss_dssp HHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCHHHH T ss_conf 9999999869998999833433467736999999998629874774628750002110134543204456 No 232 >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Probab=42.54 E-value=16 Score=16.03 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=57.6 Q ss_pred HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC Q ss_conf 99999978988999-828589999998289967999900789---66217999863101332100002443210000111 Q gi|254780526|r 15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 (223) Q Consensus 15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l~~---~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~ 90 (223) +...+.+.|..|.. +.+...+..... ..+|.+++.-.--. .....+.++..+++..++|||.-.+-.+-.+...+ T Consensus 102 ~~~~~~~~g~~v~~~v~~~~~A~~a~~-~g~D~lv~qG~eaGGH~g~~~~~~L~~~v~~~~~vPviaAGGI~dg~~~aaa 180 (332) T 2z6i_A 102 YMERFHEAGIIVIPVVPSVALAKRMEK-IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG 180 (332) T ss_dssp THHHHHHTTCEEEEEESSHHHHHHHHH-TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH T ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHH T ss_conf 999999709889855878899999998-6899899867876788755651125567775068435752335428899999 Q ss_pred CCCCCEEEEE Q ss_conf 2220100010 Q gi|254780526|r 91 FDSGVDDVVN 100 (223) Q Consensus 91 l~~GAddyl~ 100 (223) |..||+.... T Consensus 181 l~lGA~gV~~ 190 (332) T 2z6i_A 181 FMLGAEAVQV 190 (332) T ss_dssp HHTTCSEEEE T ss_pred HHCCCCEEEE T ss_conf 9759763223 No 233 >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Probab=42.13 E-value=17 Score=15.99 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=27.1 Q ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEE Q ss_conf 982899679999007896621799986310133210000244321000011122201000 Q gi|254780526|r 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 (223) Q Consensus 39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddy 98 (223) +.....|++++|..- .....-...++.+|+..++|||+ ..-.+.+......++|||.. T Consensus 113 lv~agvd~ivID~ah-g~~~~~~~~ik~~r~~~~~~vi~-GNVaT~e~a~~L~~aGAD~V 170 (361) T 3khj_A 113 LVEAGVDVIVLDSAH-GHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGI 170 (361) T ss_dssp HHHTTCSEEEECCSC-CSBHHHHHHHHHHHHHCCCEEEE-EEECSHHHHHHHHHTTCSEE T ss_pred HHHCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCCEEE-CCCCCHHHHHHHHHCCCCEE T ss_conf 997799999992898-85148999999986027988686-55388899999997199889 No 234 >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreductase; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Probab=42.02 E-value=17 Score=15.98 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=57.0 Q ss_pred HHHHHHHCCCEEEE-EECHHHHHHHHHHCCCCEEEEEEEC-----CCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCC Q ss_conf 99999978988999-8285899999982899679999007-----89662179998631013321000024432100001 Q gi|254780526|r 15 YIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL-----IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 (223) Q Consensus 15 l~~~L~~~g~~v~~-~~~~~~~~~l~~~~~~d~~iid~~l-----~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i 88 (223) +...+...|..+-. +.+.+.+..... .-.|.+++.-.- ..+....+.++.++++..++|||.=.+-.+-.+.. T Consensus 110 ~i~~~~~~g~~v~~~v~s~~~A~~a~~-~G~D~li~qG~eaGGh~g~~~~~~~~L~~~v~~~~~iPviaAGGI~~g~~ia 188 (328) T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAER-LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328) T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH-HCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHH T ss_conf 999998769889996077999999998-2999212027766667787754166758999873378677136656669999 Q ss_pred CCCCCCCEEEEE Q ss_conf 112220100010 Q gi|254780526|r 89 DFFDSGVDDVVN 100 (223) Q Consensus 89 ~~l~~GAddyl~ 100 (223) .+|..|||.... T Consensus 189 aal~lGA~gV~~ 200 (328) T 2gjl_A 189 AALALGADAINM 200 (328) T ss_dssp HHHHHTCSEEEE T ss_pred HHHHCCCCHHEE T ss_conf 998439512056 No 235 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=41.28 E-value=17 Score=15.91 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=34.7 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 33212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) ....++.+|..+|.+|.+++. +|..++++.+ ..++.++.-++.+|+++ T Consensus 424 ~~~~l~~~~~~iL~~l~~~~~--it~~ela~~l------~~s~~~~~~~L~~L~~~ 471 (583) T 3lmm_A 424 EARQDDYRIAIVLYLLFQRPF--ITIDVVARGL------QSGKEAARNALEAARQT 471 (583) T ss_dssp GGGTTCHHHHHHHHHHHHSSS--BCHHHHHHHH------TSCHHHHHHHHHHHHTC T ss_pred CCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 334676678999999986888--7899999886------88999999999999977 No 236 >1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Probab=41.05 E-value=6.4 Score=18.61 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=7.5 Q ss_pred HHHHHHHCCCCCCEECC Q ss_conf 99863101332100002 Q gi|254780526|r 62 ELPRIIRAHSQVPLIGI 78 (223) Q Consensus 62 ~l~~~lr~~~~~pII~l 78 (223) +..+.+|+..+.|++.. T Consensus 59 ~~~~~~~~~~~~~~~~~ 75 (234) T 1yxy_A 59 RDIKEIQAITDLPIIGI 75 (234) T ss_dssp HHHHHHHTTCCSCEEEE T ss_pred HHHHHHHHCCCCCEEEE T ss_conf 76999972467663667 No 237 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* Probab=40.42 E-value=16 Score=16.05 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=34.9 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 233212421012344321128834008999986528765777661368899999986014567 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) ..-+.+|+.-..+|+.|.++ +..+|-++|.+.+-.. ...++. +.|||.-+.|...+- T Consensus 15 ~~g~r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~-~~~is~----aTVYR~L~~L~~~gi 71 (145) T 2fe3_A 15 ETGVRITPQRHAILEYLVNS-MAHPTADDIYKALEGK-FPNMSV----ATVYNNLRVFRESGL 71 (145) T ss_dssp HTTCCCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGG-CTTCCH----HHHHHHHHHHHHTTS T ss_pred HCCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHH-CCCCCH----HHHHHHHHHHHHHHC T ss_conf 86998599999999999858-9999999999999850-789888----899999999985521 No 238 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=40.11 E-value=16 Score=16.13 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=7.2 Q ss_pred CCCCCCCCHHHHHHHH Q ss_conf 3212421012344321 Q gi|254780526|r 146 VFPLPRRERRILEYLM 161 (223) Q Consensus 146 ~i~LT~~E~~lL~~L~ 161 (223) .+.||++=.+++.-+. T Consensus 94 ~v~LT~~G~~~~~~~~ 109 (155) T 1s3j_A 94 DLSLTDEGDIKFEEVL 109 (155) T ss_dssp EEEECHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHH T ss_conf 0024898999999999 No 239 >1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2 Probab=39.70 E-value=18 Score=15.76 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=39.6 Q ss_pred CCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 124210123443211-28834008999986528765777661368899999986014567 Q gi|254780526|r 148 PLPRRERRILEYLMA-NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 148 ~LT~~E~~lL~~L~~-~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) .|+++|..|+..-.- ..+++.|-.+|.+.+ .++...|...-.+--+||+.... T Consensus 18 ~L~~rEr~Il~~ryGl~~~~~~tl~eIa~~l------gvSrerVRQie~~Al~kLr~~~~ 71 (81) T 1tlh_B 18 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQF------DVTRERIRQIEAKALRKLRHPSR 71 (81) T ss_dssp TCCHHHHHHHHHHTCCCTTSCCCHHHHHHHH------HHHHHHHHHHHHHHHHHCCSSCC T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHCHHH T ss_conf 0999999999998278999855799999998------97999999999999999857067 No 240 >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Probab=38.78 E-value=19 Score=15.67 Aligned_cols=187 Identities=11% Similarity=0.093 Sum_probs=85.1 Q ss_pred HHHHHHHHCCCEEEEE-ECH-HHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHHCCCCCCEECCCCCCCCCCCCCC Q ss_conf 9999999789889998-285-8999999828996799990078966217-999863101332100002443210000111 Q gi|254780526|r 14 GYIALFGDDGVSLEGF-NSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV-LELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 (223) Q Consensus 14 ~l~~~L~~~g~~v~~~-~~~-~~~~~l~~~~~~d~~iid~~l~~~~~~g-~~l~~~lr~~~~~pII~lt~~~~~~~~i~~ 90 (223) .++..|.+-...+-++ ... .....+....-+|.+++|.-=..-+... ..+++..+...-.|++=+.. .+....-++ T Consensus 9 ~lk~~l~~g~~~~G~~~~~~sp~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~-~~~~~i~~~ 87 (256) T 1dxe_A 9 KFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPT-NEPVIIKRL 87 (256) T ss_dssp HHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSS-SCHHHHHHH T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCHHHHHHH T ss_conf 9999998799669987578997999999817999899826879886777999999997179983885688-999999998 Q ss_pred CCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHH Q ss_conf 22201000102333332-10000011122222221122----2222222222222222233212----421012344321 Q gi|254780526|r 91 FDSGVDDVVNKPIHHRE-ILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPL----PRRERRILEYLM 161 (223) Q Consensus 91 l~~GAddyl~KP~~~~e-L~ari~a~lRr~~~~~~~~~----~~~~~~~~~~~~~~~~g~~i~L----T~~E~~lL~~L~ 161 (223) |++||++.+.--++..| .-+-+++. | ..+...+-- .....-......-..+.+.+.. |+.=.+=++-.+ T Consensus 88 LD~Ga~GiivP~V~s~eea~~~v~~~-r-ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~qIEt~~av~nldeI~ 165 (256) T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAST-R-YPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIA 165 (256) T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHTT-S-CTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHH T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHE-E-ECCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCEEHHHHCCHHHHHHHHHHH T ss_conf 71898977727869999999999745-7-799998787732022213521278999843234102111678998788860 Q ss_pred CCCCCC---CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 128834---00899998652876577766136889999998601456 Q gi|254780526|r 162 ANRGKR---VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 162 ~~~g~~---vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) .-+|-- +-..+|...+ |.+.. .+.-.+...+.++.++.+..+ T Consensus 166 av~GvD~i~iGp~DLs~sl-G~~g~-~~~p~v~~ai~~v~~~~~~~g 210 (256) T 1dxe_A 166 ATEGVDGIFVGPSDLAAAL-GHLGN-ASHPDVQKAIQHIFNRASAHG 210 (256) T ss_dssp TSTTCCEEEECHHHHHHHT-TCTTC-TTSHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCEEEECHHHHHHHC-CCCCC-CCCHHHHHHHHHHHHHHHHCC T ss_conf 5789852567748898742-88889-898799999999999999859 No 241 >3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Probab=37.45 E-value=20 Score=15.54 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHCCCEEEEEECHHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCC Q ss_conf 99999999997898899982858999-999828996799990078966217999863101-332100002443 Q gi|254780526|r 11 VKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDY 81 (223) Q Consensus 11 ~~~~l~~~L~~~g~~v~~~~~~~~~~-~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~ 81 (223) ++..+...|...|+.+....+.+... .+....+-|++++... .+.....+++++..|+ ...+|+|.+|+. T Consensus 73 vA~~~~~kl~~lG~~~~~~~d~~~~~~~~~~~~~~DvlI~iS~-SG~T~evi~~~~~ak~~~~~~~vI~IT~~ 144 (220) T 3etn_A 73 IAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISN-SGKTREIVELTQLAHNLNPGLKFIVITGN 144 (220) T ss_dssp HHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECS-SSCCHHHHHHHHHHHHHCTTCEEEEEESC T ss_pred HHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 9999999999839940527817788888515888888999828-99866588889998740468715888605 No 242 >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Probab=36.60 E-value=20 Score=15.45 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=18.4 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 12344321128834008999986528765777661368899999986014 Q gi|254780526|r 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 (223) Q Consensus 154 ~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~ 203 (223) ..+++.|+.+.| ++-++..+..... +...+..+ +.+|.+.|+. T Consensus 85 Hrl~e~fL~~lg--i~~~~a~~~A~~i-EH~ls~e~----~~~L~~~Lg~ 127 (139) T 2x4h_A 85 HRVIEILLVNIG--IDKQTACEYSKQF-DYLIPEEI----IDKLYNYLGK 127 (139) T ss_dssp HHHHHHHHHHHT--CCHHHHHHHHHHH-GGGSCHHH----HHHHHHHTTC T ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHH-HHCCCHHH----HHHHHHHCCC T ss_conf 999999999949--9989999999887-75289999----9999998189 No 243 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=36.44 E-value=21 Score=15.44 Aligned_cols=45 Identities=9% Similarity=-0.058 Sum_probs=26.1 Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEE Q ss_conf 9689709899999999999978988999828589999998289967999 Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI 49 (223) Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~ii 49 (223) +|.|||=...--..+...|+..|+.+....+.+.. ....+|.+++ T Consensus 6 ~I~IIDyg~GNi~Sv~~aL~~lg~~~~ii~~~~~~----~i~~~d~IIL 50 (555) T 1jvn_A 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDF----NISGTSRLIL 50 (555) T ss_dssp EEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGC----CSTTCSCEEE T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHH----HHHCCCEEEE T ss_conf 89999799868999999999869976999687866----8845998999 No 244 >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 Probab=36.44 E-value=21 Score=15.44 Aligned_cols=70 Identities=13% Similarity=0.279 Sum_probs=48.5 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 8999999828996799990078966-217999863101332100002443210000111222010001023 Q gi|254780526|r 33 EFEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223) Q Consensus 33 ~~~~~l~~~~~~d~~iid~~l~~~~-~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223) +.+..+.......+.++|++-...+ .+-+++++.+.....+|+.+-.+-.+.++..+.+.+||+-.+.-. T Consensus 37 ~~a~~~~~~g~d~i~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGirs~~~~~~~l~~G~~rvii~s 107 (253) T 1h5y_A 37 EMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNT 107 (253) T ss_dssp HHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESH T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEECCC T ss_conf 99999998699989998510552347528999999997449856983551117767788864898895386 No 245 >1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H Probab=36.37 E-value=21 Score=15.43 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=38.7 Q ss_pred CCCCCCHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 12421012344321-1288340089999865287657776613688999999860145 Q gi|254780526|r 148 PLPRRERRILEYLM-ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 (223) Q Consensus 148 ~LT~~E~~lL~~L~-~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~ 204 (223) .|+++|..++.+-. -+.+++.|-.+|.+.+ .++...|.....+--+||+.. T Consensus 10 ~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~l------giS~erVrqi~~~al~kLr~~ 61 (73) T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYF------GVTRERIRQIENKALRKLKYH 61 (73) T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH T ss_conf 2999999999998189999987899999998------969999999999999999885 No 246 >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} Probab=36.11 E-value=12 Score=16.92 Aligned_cols=28 Identities=21% Similarity=0.149 Sum_probs=15.6 Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 00024432100001112220100010233 Q gi|254780526|r 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 (223) Q Consensus 75 II~lt~~~~~~~~i~~l~~GAddyl~KP~ 103 (223) +|-.|.++ .++..++.+.|||-...-|+ T Consensus 112 iIG~S~h~-~~e~~~a~~~gaDYi~~gpi 139 (221) T 1yad_A 112 HIGRSVHS-LEEAVQAEKEDADYVLFGHV 139 (221) T ss_dssp EEEEEECS-HHHHHHHHHTTCSEEEEECC T ss_pred EEEEECCC-HHHHHHHHHCCCCEEEECCC T ss_conf 89854445-99999998659997830677 No 247 >1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Probab=36.07 E-value=21 Score=15.40 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=30.6 Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 1242101234432112883400899998652876577766136889999998601 Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 (223) Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~ 202 (223) .|+++|..++.+.. +.-.|-.+|++.+ | ++..+|.....+-.+||+ T Consensus 187 ~L~~rer~Ii~~ry---~~~~tl~eIA~~l-g-----iS~~rVrqi~~~Al~kLR 232 (239) T 1rp3_A 187 KLPEREKLVIQLIF---YEELPAKEVAKIL-E-----TSVSRVSQLKAKALERLR 232 (239) T ss_dssp TSCHHHHHHHHHHH---TSCCCHHHHHHHT-T-----SCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH---CCCCCHHHHHHHH-C-----CCHHHHHHHHHHHHHHHH T ss_conf 79999999999992---6999999999998-9-----599999999999999999 No 248 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Probab=35.83 E-value=21 Score=15.38 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=10.7 Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 24210123443211288340089999865 Q gi|254780526|r 149 LPRRERRILEYLMANRGKRVAKTQIFSAI 177 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g~~vsr~~l~~~i 177 (223) ||..+|.+|.++..+ +..++-.+|++.+ T Consensus 37 ls~~q~~iL~~l~~~-~~~~t~~ela~~l 64 (150) T 3fm5_A 37 LRVRSYSVLVLACEQ-AEGVNQRGVAATM 64 (150) T ss_dssp CCHHHHHHHHHHHHS-TTCCCSHHHHHHH T ss_pred CCHHHHHHHHHHHHC-CCCCCHHHHHHHH T ss_conf 799999999999985-9898999999997 No 249 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=35.62 E-value=21 Score=15.36 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=8.9 Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEE Q ss_conf 8970989999999999997898899 Q gi|254780526|r 3 VLIDDRALVKDGYIALFGDDGVSLE 27 (223) Q Consensus 3 LiVeDd~~~~~~l~~~L~~~g~~v~ 27 (223) ++||.|+...+. +...|+.+. T Consensus 33 vviD~d~~~~~~----~~~~g~~~v 53 (144) T 2hmt_A 33 LAVDINEEKVNA----YASYATHAV 53 (144) T ss_dssp EEEESCHHHHHT----TTTTCSEEE T ss_pred EEEECCHHHHHH----HHHCCCEEE T ss_conf 999796799999----985397499 No 250 >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} Probab=35.22 E-value=19 Score=15.63 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=33.9 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 33212421012344321128834008999986528765777661368899999986014567 Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223) Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223) .-+..|+.-..||+.|.+ .++.+|-++|++.+-.. +..++. +.|||.-+.|.+.+- T Consensus 5 ~Glr~T~qR~~Il~~l~~-~~~~~sa~ei~~~l~~~-~~~i~~----aTVYR~L~~L~~~gl 60 (131) T 2o03_A 5 AGVRSTRQRAAISTLLET-LDDFRSAQELHDELRRR-GENIGL----TTVYRTLQSMASSGL 60 (131) T ss_dssp THHHHHHHHHHHHHHHHH-CCSCEEHHHHHHHHHHT-TCCCCH----HHHHHHHHHHHTTTS T ss_pred HCCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHHHH-CCCCCH----HHHHHHHHHHHHCCC T ss_conf 179739999999999980-89998999999999975-889988----899999999986894 No 251 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=34.97 E-value=22 Score=15.29 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.3 Q ss_pred HHHHHHCCCC Q ss_conf 9863101332 Q gi|254780526|r 63 LPRIIRAHSQ 72 (223) Q Consensus 63 l~~~lr~~~~ 72 (223) +++.+++++. T Consensus 8 IL~~L~~d~R 17 (162) T 3i4p_A 8 ILRILQEDST 17 (162) T ss_dssp HHHHHTTCSC T ss_pred HHHHHHHCCC T ss_conf 9999998489 No 252 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=34.51 E-value=22 Score=15.24 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=40.0 Q ss_pred HHHHCCCCEEEEEEECCC--CCCHH--------------------HHHHHHHHCCCCCCEECCCCCCCCCC--CCCCCCC Q ss_conf 998289967999900789--66217--------------------99986310133210000244321000--0111222 Q gi|254780526|r 38 LQSSAREDVSAIEAFLIG--KGEKV--------------------LELPRIIRAHSQVPLIGISDYPSLQT--TLDFFDS 93 (223) Q Consensus 38 l~~~~~~d~~iid~~l~~--~~~~g--------------------~~l~~~lr~~~~~pII~lt~~~~~~~--~i~~l~~ 93 (223) +......-++++.+.+|. |-.|| +++++.+|+..++|+++++..+..-. .-++-++ T Consensus 38 l~~l~~~G~D~iEiGiPfSDP~aDGpvIq~a~~rAl~~g~~~~~~~~~~~~~~~~~~~~~ilm~y~n~~~~~~~~~~~~~ 117 (262) T 1rd5_A 38 LRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEA 117 (262) T ss_dssp HHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHT T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHC T ss_conf 99999759999996788776555677256531324356700056676654310134676034421156216777777625 Q ss_pred CCEEEEECCCCCC Q ss_conf 0100010233333 Q gi|254780526|r 94 GVDDVVNKPIHHR 106 (223) Q Consensus 94 GAddyl~KP~~~~ 106 (223) |+|+.|.-..-++ T Consensus 118 GvdGviipDlp~e 130 (262) T 1rd5_A 118 GVHGLIVPDLPYV 130 (262) T ss_dssp TCCEEECTTCBTT T ss_pred CCEEEECCCCHHH T ss_conf 8204422576056 No 253 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=33.83 E-value=22 Score=15.28 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 212421012344321128834008999986528765777661368899999986 Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 (223) Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkK 200 (223) ..||..++.+|..|..+++ ++-.+|++.+ .++..++--.|.+|-+| T Consensus 49 ~gLt~~q~~vL~~l~~~~~--~t~~~la~~l------~i~~~~vs~~i~~L~~~ 94 (161) T 3e6m_A 49 EKLPTPKLRLLSSLSAYGE--LTVGQLATLG------VMEQSTTSRTVDQLVDE 94 (161) T ss_dssp HTCCHHHHHHHHHHHHHSE--EEHHHHHHHT------TCCHHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH------CCCHHHHHHHHHHHHHC T ss_conf 6979999999999997799--8999999998------97887999999999838 No 254 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=33.76 E-value=23 Score=15.17 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=29.2 Q ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 2101234432112883400899998652876577766136889999998 Q gi|254780526|r 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223) Q Consensus 151 ~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223) +.-+.||..|+.+++ .+-.+|.+.+ ..+..|+-.|++.|++ T Consensus 24 p~Rl~Il~~L~~~~~--~~v~eLa~~l------~~s~stvS~HL~~L~~ 64 (99) T 3cuo_A 24 PKRLLILCMLSGSPG--TSAGELTRIT------GLSASATSQHLARMRD 64 (99) T ss_dssp HHHHHHHHHHTTCCS--EEHHHHHHHH------CCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCC--EEHHHHHHHH------CCCHHHHHHHHHHHHH T ss_conf 999999999858999--0799977455------8598799999999998 No 255 >1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Probab=32.07 E-value=24 Score=15.04 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHCCCEEEE Q ss_conf 99999999999978988999 Q gi|254780526|r 9 ALVKDGYIALFGDDGVSLEG 28 (223) Q Consensus 9 ~~~~~~l~~~L~~~g~~v~~ 28 (223) +.+|. ..+.|++.||-... T Consensus 53 ATIRN-~Ma~LE~~G~L~qp 71 (338) T 1stz_A 53 ATIRN-DMKKLEYLGYIYQP 71 (338) T ss_dssp HHHHH-HHHHHHHTTSEECC T ss_pred HHHHH-HHHHHHHCCCCCCC T ss_conf 88999-99999978671589 No 256 >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Probab=31.95 E-value=24 Score=14.98 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=5.9 Q ss_pred HHHCCCCEEEEE Q ss_conf 982899679999 Q gi|254780526|r 39 QSSAREDVSAIE 50 (223) Q Consensus 39 ~~~~~~d~~iid 50 (223) .....+|+++.- T Consensus 86 l~~~~~d~I~~g 97 (273) T 2xed_A 86 IADAAPEVILYA 97 (273) T ss_dssp HHTTCCSEEEEC T ss_pred HHCCCCCEEEEE T ss_conf 420466778870 No 257 >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Probab=31.61 E-value=25 Score=14.95 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=31.0 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 967999900789662179998631013321000024432100001112220100010 Q gi|254780526|r 44 EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 (223) Q Consensus 44 ~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~ 100 (223) ...+=+..+-..=++ .++.++..|+..++||+.=-=--++.+..++..+|||..+. T Consensus 74 A~aISVLTe~~~F~G-s~~~l~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADavLL 129 (251) T 1i4n_A 74 ADAISILTEKHYFKG-DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILI 129 (251) T ss_dssp CSEEEEECCCSSSCC-CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEE T ss_pred CCEEEEECCCCCCCC-CHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCEEEE T ss_conf 977899646676899-78889999861466206643635099968999769989998 No 258 >3cni_A Putative ABC type-2 transporter; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima MSB8} Probab=31.34 E-value=25 Score=14.92 Aligned_cols=69 Identities=9% Similarity=-0.011 Sum_probs=46.0 Q ss_pred EEEEC-CCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCC Q ss_conf 68970-9899999999999978988999828589999998289967999900789662179998631013321000024 Q gi|254780526|r 2 FVLID-DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 (223) Q Consensus 2 ILiVe-Dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt 79 (223) |-||| |.-.+.+.+...|....+.+....+.+++.......+.+.++++ | + +|+ +.+....+.+|-+.+ T Consensus 13 iaivd~D~s~~s~~~~~~L~~~~~~~~~~~d~~eA~~~l~~g~~~~vivI---P-~---~Fs--~~l~~g~~~~I~v~~ 82 (156) T 3cni_A 13 VAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIVI---P-K---GFS--QSLESGEKARLEIVW 82 (156) T ss_dssp EEEEECCCSHHHHHHHHHHHTSSEEEEEESCHHHHHHHHHHHTCSEEEEE---C-T---THH--HHHHHTCCEEEEEEE T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEE---C-C---CHH--HHHHCCCCCEEEEEE T ss_conf 99998999979999999861699658997999999999983986799998---8-3---478--998779997589999 No 259 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} Probab=30.01 E-value=25 Score=14.86 Aligned_cols=55 Identities=9% Similarity=0.101 Sum_probs=26.3 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 23321242101234432112883400899998652876577766136889999998601456 Q gi|254780526|r 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 144 g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) ..-+.+|+.-..||++|.++ +. +|-++|.+.+-.. ...++.. .|||.-..|...+ T Consensus 12 ~~g~r~T~~R~~Il~~L~~~-~~-~ta~ei~~~l~~~-~~~i~~~----TVYR~L~~L~~~G 66 (145) T 3eyy_A 12 QRGYRLTPQRQLVLEAVDTL-EH-ATPDDILGEVRKT-ASGINIS----TVYRTLELLEELG 66 (145) T ss_dssp TTTCCCCHHHHHHHHHHHHH-SS-BCHHHHHHHHHTT-CTTCCHH----HHHHHHHHHHHHT T ss_pred HCCCCCCHHHHHHHHHHHHC-CC-CCHHHHHHHHHHH-CCCCCHH----HHHHHHHHHHHHH T ss_conf 86999699999999999737-99-8999999999975-8887658----9999999999865 No 260 >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Probab=29.90 E-value=26 Score=14.77 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999999997898899982 Q gi|254780526|r 10 LVKDGYIALFGDDGVSLEGFN 30 (223) Q Consensus 10 ~~~~~l~~~L~~~g~~v~~~~ 30 (223) .+...|+..|.+.|+.|.+++ T Consensus 21 ~v~~~La~aL~~~Gh~V~Vit 41 (485) T 1rzu_A 21 DVVGALPIALEAHGVRTRTLI 41 (485) T ss_dssp HHHHHHHHHHHTTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 999999999997699799996 No 261 >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Probab=29.87 E-value=13 Score=16.65 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=6.9 Q ss_pred CCCCHHHHHHHHHC Q ss_conf 83400899998652 Q gi|254780526|r 165 GKRVAKTQIFSAIY 178 (223) Q Consensus 165 g~~vsr~~l~~~iw 178 (223) |=+.|-++..+.+. T Consensus 249 GGI~s~~Da~e~i~ 262 (311) T 1jub_A 249 GGIETGQDAFEHLL 262 (311) T ss_dssp SSCCSHHHHHHHHH T ss_pred CCCCCHHHHHHHHH T ss_conf 68599999999998 No 262 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=28.96 E-value=27 Score=14.66 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=5.1 Q ss_pred HHHHHHCCCCCCE Q ss_conf 9863101332100 Q gi|254780526|r 63 LPRIIRAHSQVPL 75 (223) Q Consensus 63 l~~~lr~~~~~pI 75 (223) +++.+++++..|+ T Consensus 12 Il~~L~~n~R~s~ 24 (150) T 2w25_A 12 LVRELAADGRATL 24 (150) T ss_dssp HHHHHHHCTTCCH T ss_pred HHHHHHHCCCCCH T ss_conf 9999998389999 No 263 >2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259} PDB: 3ii8_A* 3n3t_A* Probab=27.72 E-value=22 Score=15.29 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=6.8 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 766136889999998 Q gi|254780526|r 185 VEENVVESHISKLRK 199 (223) Q Consensus 185 ~~~~tv~~~I~rLRk 199 (223) .-+.+.+....-+++ T Consensus 264 ~~P~~~~~~~~~l~~ 278 (294) T 2r6o_A 264 STPQAADAFASLLDR 278 (294) T ss_dssp CCCEEHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 346999999999985 No 264 >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1 Probab=27.27 E-value=21 Score=15.31 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=34.8 Q ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 99828996799990078966217999863101-332100002443210000111222010001 Q gi|254780526|r 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 (223) Q Consensus 38 l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl 99 (223) .+...-.|++++|.--. -.....+.++.+|. .+++|||.-.- .+.+......++|||... T Consensus 244 ~Lv~aGvD~ivID~Ahg-hs~~~~~~i~~ik~~~~~~~viaGnv-~t~~~a~~L~~aGad~i~ 304 (494) T 1vrd_A 244 KLVKAGVDVIVIDTAHG-HSRRVIETLEMIKADYPDLPVVAGNV-ATPEGTEALIKAGADAVK 304 (494) T ss_dssp HHHHTTCSEEEECCSCC-SSHHHHHHHHHHHHHCTTSCEEEEEE-CSHHHHHHHHHTTCSEEE T ss_pred HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCCCCEEEEEE-CCHHHHHHHHHHCCCEEE T ss_conf 99976998999954664-37999999999998689986797532-429999999983988888 No 265 >3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua} Probab=27.01 E-value=29 Score=14.45 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=24.6 Q ss_pred CCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEC Q ss_conf 88340-08999986528765777661368899999986014567771577868630313 Q gi|254780526|r 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 (223) Q Consensus 164 ~g~~v-sr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~ 221 (223) +|.-+ |-.+|++.+ .++..||.--+..|. ...+|.+.+|.||..- T Consensus 33 ~G~~LPser~La~~~------~VSr~tVr~Al~~L~-------~~Glv~~~~g~G~~V~ 78 (125) T 3neu_A 33 GEDKLPSVREMGVKL------AVNPNTVSRAYQELE-------RAGYIYAKRGMGSFVT 78 (125) T ss_dssp TTCBCCCHHHHHHHH------TCCHHHHHHHHHHHH-------HTTSEEEETTTEEEEC T ss_pred CCCCCCCHHHHHHHH------CCCHHHHHHHHHHHH-------HCCCEEEECCCEEEEC T ss_conf 969995499999993------928899999999999-------8891799638679980 No 266 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=26.58 E-value=30 Score=14.40 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=5.9 Q ss_pred CEEEECCCCEEE Q ss_conf 157786863031 Q gi|254780526|r 209 PVDSKRFLGYSI 220 (223) Q Consensus 209 ~I~tvrg~GY~l 220 (223) +|.+.+|.||.. T Consensus 64 li~~~~g~G~~V 75 (126) T 3by6_A 64 VIRTIPGKGTFI 75 (126) T ss_dssp SEEEETTTEEEE T ss_pred CEEEECCCEEEE T ss_conf 279973815898 No 267 >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Probab=26.54 E-value=30 Score=14.40 Aligned_cols=21 Identities=24% Similarity=-0.010 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999999997898899982 Q gi|254780526|r 10 LVKDGYIALFGDDGVSLEGFN 30 (223) Q Consensus 10 ~~~~~l~~~L~~~g~~v~~~~ 30 (223) .+...|...|.+.|+.|.++. T Consensus 21 ~~v~~L~~aL~~~Gh~V~Vit 41 (485) T 2qzs_A 21 DVIGALPAAQIADGVDARVLL 41 (485) T ss_dssp HHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 999999999997699799996 No 268 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=26.10 E-value=31 Score=14.34 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=39.0 Q ss_pred CCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 124210123443211-2883400899998652876577766136889999998601456 Q gi|254780526|r 148 PLPRRERRILEYLMA-NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223) Q Consensus 148 ~LT~~E~~lL~~L~~-~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223) .|+++|..++..-+- +.+.+.|-++|.+.+ .++.-.|...-.+-.+||+... T Consensus 18 ~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~l------giSreRVRQie~~Al~kLr~~~ 70 (87) T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYF------NVTRERIRQIEVKALRKLRHPS 70 (87) T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH------TCCHHHHHHHHHHHHHHHBTTB T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHCCH T ss_conf 4999999999998078899965799999895------9889999999999999986707 No 269 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=25.08 E-value=32 Score=14.23 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=32.0 Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEC Q ss_conf 1012344321128834008999986528765777661368899999986014567771577868630313 Q gi|254780526|r 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 (223) Q Consensus 152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~ 221 (223) .-..||.+|.. + .+-.+|.+.+ ..+..|+.-|+..|++ ..+|+... -||++- T Consensus 32 ~R~~IL~~L~~--~--~~~~eLa~~l------g~s~stvs~HL~~L~~-------aGLV~~~~-~~y~lt 83 (96) T 1y0u_A 32 VRRKILRMLDK--G--RSEEEIMQTL------SLSKKQLDYHLKVLEA-------GFCIERVG-ERWVVT 83 (96) T ss_dssp HHHHHHHHHHT--T--CCHHHHHHHH------TCCHHHHHHHHHHHHH-------TTSEEEET-TEEEEC T ss_pred HHHHHHHHHCC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHH-------CCCEEEEC-CEEEEC T ss_conf 99999998357--9--9799999998------9199899999999998-------89679847-989986 No 270 >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* Probab=24.69 E-value=19 Score=15.67 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.9 Q ss_pred CCCCHHHHHHHHH Q ss_conf 8340089999865 Q gi|254780526|r 165 GKRVAKTQIFSAI 177 (223) Q Consensus 165 g~~vsr~~l~~~i 177 (223) |=+.|-++..+.+ T Consensus 352 GGI~s~~DA~e~i 364 (415) T 3i65_A 352 GGIFSGLDALEKI 364 (415) T ss_dssp SSCCSHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 9989999999999 No 271 >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A Probab=24.15 E-value=33 Score=14.12 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=54.7 Q ss_pred HHHHHHHHHCCCEEEEE-EC-HHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHHCCCCCCEECCCCCCCCCCCCC Q ss_conf 99999999789889998-28-58999999828996799990078966217-99986310133210000244321000011 Q gi|254780526|r 13 DGYIALFGDDGVSLEGF-NS-LEFEEWLQSSAREDVSAIEAFLIGKGEKV-LELPRIIRAHSQVPLIGISDYPSLQTTLD 89 (223) Q Consensus 13 ~~l~~~L~~~g~~v~~~-~~-~~~~~~l~~~~~~d~~iid~~l~~~~~~g-~~l~~~lr~~~~~pII~lt~~~~~~~~i~ 89 (223) +.++..|++....+-.+ .. ....-.+....-+|.+++|.-=..-+... ..+++..+...-.|++=+.. .+.....+ T Consensus 7 N~lk~kL~~g~~~~G~~~~~~sp~~~e~l~~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~vRvp~-~~~~~i~r 85 (267) T 2vws_A 7 NPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVE-GSKPLIKQ 85 (267) T ss_dssp CHHHHHHHTTCCEEEEEECSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSS-CCHHHHHH T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC-CCHHHHHH T ss_conf 79999998799879988789997999999837989999816689888999999998861469974587147-84799999 Q ss_pred CCCCCCEEEEECCCCCCCCC Q ss_conf 12220100010233333210 Q gi|254780526|r 90 FFDSGVDDVVNKPIHHREIL 109 (223) Q Consensus 90 ~l~~GAddyl~KP~~~~eL~ 109 (223) +|++||++-+.--++..|=. T Consensus 86 ~LD~Ga~GIivP~v~s~eea 105 (267) T 2vws_A 86 VLDIGAQTLLIPMVDTAEQA 105 (267) T ss_dssp HHHTTCCEEEECCCCSHHHH T ss_pred HHHCCCCEEEECCCCCHHHH T ss_conf 98389988998994999999 No 272 >3dqq_A Putative tRNA synthase; structural genomics, csgid, unknown function, center for structural genomics of infectious diseases; 2.70A {Salmonella typhimurium} Probab=23.96 E-value=34 Score=14.09 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=40.5 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECC-CCCCHH Q ss_conf 68970989999999999997898899982858999999828996799990078-966217 Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 (223) Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~-~~~~~g 60 (223) |+|+.||..=+......|...|+.+..+.+..... .....|+++++.+-. +|.... T Consensus 5 i~iiADDlTGA~dt~~~~~~~G~~t~v~~~~~~~~---~~~~~dvvvi~t~SR~l~~~eA 61 (421) T 3dqq_A 5 IGVIADDFTGATDIASFLVENGMPTVQINDVPTGT---QPEGCDAVVISLKTRSCPAQEA 61 (421) T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEEEESSCCSC---CCSSCSEEEEECSCSSSCHHHH T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC---CCCCCCEEEEECCCCCCCHHHH T ss_conf 99993385218999999998798399985688755---5678988999888789999999 No 273 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=23.92 E-value=32 Score=14.18 Aligned_cols=64 Identities=5% Similarity=-0.220 Sum_probs=31.4 Q ss_pred EECCCHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC Q ss_conf 9709899999999999978988-9998285899999982899679999007896621799986310133 Q gi|254780526|r 4 LIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 (223) Q Consensus 4 iVeDd~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~ 71 (223) -||-++...+.....++..|+. |.. -.++.........+||.+++...++. .. -.+.++++.+. T Consensus 105 ~iE~~~~l~~~A~~~l~~~g~~nv~~-~~gD~~~g~~~~~~fD~Iiv~~~~~~--ip-~~l~~qLkpGG 169 (317) T 1dl5_A 105 SVEYSRKICEIAKRNVERLGIENVIF-VCGDGYYGVPEFSPYDVIFVTVGVDE--VP-ETWFTQLKEGG 169 (317) T ss_dssp EEESCHHHHHHHHHHHHHTTCCSEEE-EESCGGGCCGGGCCEEEEEECSBBSC--CC-HHHHHHEEEEE T ss_pred EEECCHHHHHHHHHHHHHHCCCCEEE-EECCHHHCCCCCCCCCEEEECCCHHH--HH-HHHHHHCCCCC T ss_conf 99578178999999899735787399-98955758877899419999687688--58-99998438893 No 274 >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Probab=23.74 E-value=14 Score=16.57 Aligned_cols=43 Identities=7% Similarity=-0.110 Sum_probs=21.5 Q ss_pred HHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 7999863101332100002443210000111222010001023 Q gi|254780526|r 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223) Q Consensus 60 g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223) .++.++++|+...+||..=-...+..+....++.||.|++.+. T Consensus 287 ~~~~l~~lr~~~~iPIa~gE~~~~~~~~~~~i~~~a~Div~~d 329 (470) T 3p0w_A 287 GREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLAD 329 (470) T ss_dssp HHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBCC T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEC T ss_conf 6999999986169884457664778888887645764099977 No 275 >3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A* Probab=23.56 E-value=20 Score=15.53 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=7.4 Q ss_pred CCCCHHHHHHHHHC Q ss_conf 83400899998652 Q gi|254780526|r 165 GKRVAKTQIFSAIY 178 (223) Q Consensus 165 g~~vsr~~l~~~iw 178 (223) |=+.|-++..+.+. T Consensus 284 GGI~s~~Da~e~i~ 297 (354) T 3gz3_A 284 GGVYTGEDAFLHVL 297 (354) T ss_dssp SSCCSHHHHHHHHH T ss_pred CCCCCHHHHHHHHH T ss_conf 68599999999998 No 276 >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* Probab=23.51 E-value=19 Score=15.67 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=8.6 Q ss_pred CCCCCCHHHHHHHHHC Q ss_conf 2883400899998652 Q gi|254780526|r 163 NRGKRVAKTQIFSAIY 178 (223) Q Consensus 163 ~~g~~vsr~~l~~~iw 178 (223) ..|=+.|-++..+.+. T Consensus 249 g~GGI~s~~Da~e~i~ 264 (314) T 2e6f_A 249 GCGGVYSGEDAFLHIL 264 (314) T ss_dssp EESSCCSHHHHHHHHH T ss_pred EECCCCCHHHHHHHHH T ss_conf 7178589999999998 No 277 >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Probab=23.37 E-value=34 Score=14.02 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=33.2 Q ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC--CCCCCEECCCCCCCC Q ss_conf 99999828996799990078966217999863101--332100002443210 Q gi|254780526|r 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA--HSQVPLIGISDYPSL 84 (223) Q Consensus 35 ~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~--~~~~pII~lt~~~~~ 84 (223) .........+|++++--|+...+.+.-+.+..++. ....|++++.+..|. T Consensus 24 ~l~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 75 (228) T 1uf3_A 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDA 75 (228) T ss_dssp HHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSC T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9998777299999987886999878299999999740457758999689981 No 278 >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406} Probab=23.32 E-value=12 Score=16.90 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=25.1 Q ss_pred CCCCCHHHHHHHHCCCC--CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 24210123443211288--3400899998652876577766136889999998601 Q gi|254780526|r 149 LPRRERRILEYLMANRG--KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 (223) Q Consensus 149 LT~~E~~lL~~L~~~~g--~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~ 202 (223) .+.+| +++.+|.+.++ .-+|+++|++.+ .+++. +++|+||||- T Consensus 149 ~~~~~-R~~~~l~~~~~i~~~~t~~~iA~~l------G~sr~----tlSRi~k~l~ 193 (194) T 3dn7_A 149 YSKEE-QYHNFSSRFPEFIQRVPQYLLASYL------GFTPE----YLSEIRKKYI 193 (194) T ss_dssp C------------------------------------------------------- T ss_pred CCHHH-HHHHHHHHCCCCCCCCCHHHHHHHH------CCCHH----HHHHHHHHHC T ss_conf 88999-9999998692535697999999997------99899----9999999862 No 279 >1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 1jct_A* 1bqg_A Probab=23.21 E-value=14 Score=16.44 Aligned_cols=45 Identities=9% Similarity=-0.112 Sum_probs=23.1 Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 179998631013321000024432100001112220100010233 Q gi|254780526|r 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 (223) Q Consensus 59 ~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~ 103 (223) ...+.+.++|+...+||..=-...+..+....++.||.|++.|+. T Consensus 270 ~~~~~l~~lr~~~~iPIa~gE~~~~~~~~~~~i~~~a~Di~~~d~ 314 (446) T 1ec7_A 270 SGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP 314 (446) T ss_dssp CHHHHHHHHHHHHCCCEEESSSCSSHHHHHHHHHHTCCSEEBCCH T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 115787777414897700013536534554554157626997162 No 280 >3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} Probab=22.83 E-value=35 Score=13.96 Aligned_cols=20 Identities=5% Similarity=-0.134 Sum_probs=8.1 Q ss_pred HHHHHHHHHHCCCEEEEEEC Q ss_conf 99999999978988999828 Q gi|254780526|r 12 KDGYIALFGDDGVSLEGFNS 31 (223) Q Consensus 12 ~~~l~~~L~~~g~~v~~~~~ 31 (223) +..+...|...|..+....+ T Consensus 60 a~~~~~kl~~lG~~~~~~~d 79 (201) T 3fxa_A 60 AKKLVHSFNCIERPAVFLTP 79 (201) T ss_dssp HHHHHHHHHHTTCCEEECCH T ss_pred HHHHHHHHHHCCCCEEECCC T ss_conf 99999999868996585793 No 281 >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Probab=22.11 E-value=36 Score=13.86 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=31.4 Q ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEE Q ss_conf 982899679999007896621799986310133210000244321000011122201000 Q gi|254780526|r 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 (223) Q Consensus 39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddy 98 (223) +.....|++++|.--. ....-.+.+++++...++|||+ ..-.+.+.....+++|||.. T Consensus 152 l~~aGvd~ivID~Ahg-~s~~~~~~ik~~k~~~~v~VIa-GNV~T~e~a~~L~~aGAD~V 209 (400) T 3ffs_A 152 LVEAGVDVIVLDSAHG-HSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGI 209 (400) T ss_dssp HHHHTCSEEEECCSCC-SBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTCSEE T ss_pred HHHCCCCEEEECCCCC-CCCCHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCCCEE T ss_conf 9875997797546554-3210678999988637963999-42178999999998099856 No 282 >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Probab=21.98 E-value=23 Score=15.18 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=8.5 Q ss_pred CCCCCHHHHHHHHHC Q ss_conf 883400899998652 Q gi|254780526|r 164 RGKRVAKTQIFSAIY 178 (223) Q Consensus 164 ~g~~vsr~~l~~~iw 178 (223) .|=+.|-++..+.+- T Consensus 281 ~GGI~s~~Da~e~i~ 295 (345) T 3oix_A 281 TGGVXTGRDAFEHIL 295 (345) T ss_dssp ESSCCSHHHHHHHHH T ss_pred ECCCCCHHHHHHHHH T ss_conf 758799999999998 No 283 >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Probab=21.96 E-value=35 Score=13.99 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=28.5 Q ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEE Q ss_conf 9828996799990078966217999863101-33210000244321000011122201000 Q gi|254780526|r 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 (223) Q Consensus 39 ~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddy 98 (223) +.....|++++|.--. -...-.++++.+|. .+++|||.=-- .+.+......++|||.. T Consensus 263 Lv~aG~d~iviD~Ahg-~s~~v~~~ik~ik~~~~~~~iiaGNV-aT~~~~~~L~~aGad~v 321 (514) T 1jcn_A 263 LTQAGVDVIVLDSSQG-NSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGL 321 (514) T ss_dssp HHHTTCSEEEECCSCC-CSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEE T ss_pred HHHCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEEE-CCHHHHHHHHHHCCCEE T ss_conf 9853897799623451-27789999999997689971886312-36999999998388889 No 284 >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Probab=21.86 E-value=27 Score=14.69 Aligned_cols=57 Identities=26% Similarity=0.261 Sum_probs=28.3 Q ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 28996799990078966217999863101-332100002443210000111222010001 Q gi|254780526|r 41 SAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 (223) Q Consensus 41 ~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl 99 (223) ..--|++++|.--. -......+++.+|. .+++|||.- .-.+.+......++|||... T Consensus 243 ~aGvDvivid~Ahg-~s~~~~~~i~~i~~~~~~~~viaG-NV~t~~~a~~L~~~Gad~v~ 300 (491) T 1zfj_A 243 EAGADAIVIDTAHG-HSAGVLRKIAEIRAHFPNRTLIAG-NIATAEGARALYDAGVDVVK 300 (491) T ss_dssp HHTCSEEEECCSCT-TCHHHHHHHHHHHHHCSSSCEEEE-EECSHHHHHHHHHTTCSEEE T ss_pred HCCCCEEEEECCCC-CCCHHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHHHHCCHHEE T ss_conf 74898799953567-763257899998753577763799-60679999999984731225 No 285 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=21.75 E-value=37 Score=13.82 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=46.2 Q ss_pred HHHHHHHHHCCCE-EEEEECHHHHHH-HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCC Q ss_conf 9999999978988-999828589999-99828996799990078966217999863101-33210000244321000011 Q gi|254780526|r 13 DGYIALFGDDGVS-LEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLD 89 (223) Q Consensus 13 ~~l~~~L~~~g~~-v~~~~~~~~~~~-l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~ 89 (223) +.+...|.+.+.- |....+.+.+.. ........+-++.+.+..| +.++.++.+++ .+++-|=.=|- -+.++.-+ T Consensus 8 ~~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEITl~t~--~a~~~i~~l~~~~p~~~vGaGTV-l~~~~~~~ 84 (224) T 1vhc_A 8 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSE--AAADAIRLLRANRPDFLIAAGTV-LTAEQVVL 84 (224) T ss_dssp HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST--THHHHHHHHHHHCTTCEEEEESC-CSHHHHHH T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECC-CCHHHHHH T ss_conf 9999999978979999689999999999999987998899968980--39999999998689918962020-45799999 Q ss_pred CCCCCCEEEEECCCCCCCCCC Q ss_conf 122201000102333332100 Q gi|254780526|r 90 FFDSGVDDVVNKPIHHREILA 110 (223) Q Consensus 90 ~l~~GAddyl~KP~~~~eL~a 110 (223) +.++||+ |+.-|.-.++++. T Consensus 85 a~~aGA~-FivSP~~~~~v~~ 104 (224) T 1vhc_A 85 AKSSGAD-FVVTPGLNPKIVK 104 (224) T ss_dssp HHHHTCS-EEECSSCCHHHHH T ss_pred HHHHCCC-EEECCCCCHHHHH T ss_conf 9983799-8972789999999 No 286 >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Probab=21.46 E-value=26 Score=14.82 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=30.3 Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 996799990078966217999863101-3321000024432100001112220100010 Q gi|254780526|r 43 REDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 (223) Q Consensus 43 ~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl~ 100 (223) ..+++++|+.= .-...-.+.++.+|+ .+++|||.=. -.+.+.....+++|||...+ T Consensus 132 ~v~~i~IDvAh-Gh~~~~~~~i~~vk~~~~~~~VIaGN-V~T~e~~~~L~~aGAD~VkV 188 (351) T 2c6q_A 132 QVKYICLDVAN-GYSEHFVEFVKDVRKRFPQHTIMAGN-VVTGEMVEELILSGADIIKV 188 (351) T ss_dssp TCCEEEEECSC-TTBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEE T ss_pred CCEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHHHCCCCEEEE T ss_conf 97199841466-66656777899999878987479863-31289999998667864897 No 287 >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Probab=21.33 E-value=32 Score=14.22 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=36.6 Q ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 99828996799990078966217999863101-332100002443210000111222010001 Q gi|254780526|r 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 (223) Q Consensus 38 l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt~~~~~~~~i~~l~~GAddyl 99 (223) .+.....|++++|.-- .....-.++++.+|+ .+++|||.=. -.+.+.....+++|||... T Consensus 160 ~Lv~agvD~ivID~ah-g~s~~~~~~ik~ik~~~p~~~VIaGN-V~T~e~a~~L~~~GAD~Vk 220 (404) T 1eep_A 160 ELVKAHVDILVIDSAH-GHSTRIIELIKKIKTKYPNLDLIAGN-IVTKEAALDLISVGADCLK 220 (404) T ss_dssp HHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHTTTCSEEE T ss_pred HHHHCCCCEEEECCCC-CCHHHHHHHHHHHHHHCCCCCEECCC-CCCHHHHHHHHHCCCCEEE T ss_conf 9986368777511456-65588999999999878998677145-5569999999975999667 No 288 >1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} SCOP: c.1.4.1 PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* 3kvm_A* 2b0m_A* 1uum_A* ... Probab=21.03 E-value=21 Score=15.31 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.4 Q ss_pred CCCCHHHHHHHHH Q ss_conf 8340089999865 Q gi|254780526|r 165 GKRVAKTQIFSAI 177 (223) Q Consensus 165 g~~vsr~~l~~~i 177 (223) |=+.+-++..+.+ T Consensus 305 GGI~s~~Da~e~i 317 (367) T 1d3g_A 305 GGVSSGQDALEKI 317 (367) T ss_dssp SSCCSHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 9949999999999 No 289 >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A Probab=20.89 E-value=39 Score=13.71 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=6.4 Q ss_pred CCCCCCCHHHHHHH Q ss_conf 21242101234432 Q gi|254780526|r 147 FPLPRRERRILEYL 160 (223) Q Consensus 147 i~LT~~E~~lL~~L 160 (223) +.||++=.+++... T Consensus 97 l~LT~~G~~~~~~~ 110 (151) T 3kp7_A 97 IKLSNKGKKYIKER 110 (151) T ss_dssp BEECHHHHHHHHHH T ss_pred HCCCHHHHHHHHHH T ss_conf 04678899999999 No 290 >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Probab=20.46 E-value=39 Score=13.65 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=7.9 Q ss_pred CCCCCCCCCCCCEEEE Q ss_conf 0000111222010001 Q gi|254780526|r 84 LQTTLDFFDSGVDDVV 99 (223) Q Consensus 84 ~~~~i~~l~~GAddyl 99 (223) .++..++.++|||..+ T Consensus 195 ~~~a~~~~~~Gad~i~ 210 (332) T 1vcf_A 195 REAALALRDLPLAAVD 210 (332) T ss_dssp HHHHHHHTTSCCSEEE T ss_pred HHHHHHHHHCCCCEEE T ss_conf 9999999976999999 No 291 >2zru_A Isopentenyl-diphosphate delta-isomerase; type 2, IDI, FMN, isopentenyl diphosphate isomerase, cytoplasm, flavoprotein, isoprene biosynthesis; HET: FMN; 2.00A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* Probab=20.15 E-value=27 Score=14.69 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=25.8 Q ss_pred HHHHHHHHHCCCCCCEEC--CCCCCCCCCCCCCCCCCCEEEEEC Q ss_conf 799986310133210000--244321000011122201000102 Q gi|254780526|r 60 VLELPRIIRAHSQVPLIG--ISDYPSLQTTLDFFDSGVDDVVNK 101 (223) Q Consensus 60 g~~l~~~lr~~~~~pII~--lt~~~~~~~~i~~l~~GAddyl~K 101 (223) ..+.++.+++....|+++ .....+.++...+.++|||.-+.. T Consensus 175 ~~~~i~~l~~~~~~pvivK~i~~~~~~e~a~~~~~~Gad~I~Vs 218 (368) T 2zru_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTS 218 (368) T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECC T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 59999999987599847986267743999999998189979998 No 292 >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Probab=20.03 E-value=40 Score=13.59 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=13.3 Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 00024432100001112220100010233 Q gi|254780526|r 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 (223) Q Consensus 75 II~lt~~~~~~~~i~~l~~GAddyl~KP~ 103 (223) ++..|.+ +.++...+.+.|||-...-|+ T Consensus 110 ~ig~s~h-~~~e~~~a~~~g~DYi~~gpv 137 (215) T 1xi3_A 110 IIGASVY-SLEEALEAEKKGADYLGAGSV 137 (215) T ss_dssp EEEEEES-SHHHHHHHHHHTCSEEEEECS T ss_pred EEEECCC-HHHHHHHHHHCCCCEEEECCC T ss_conf 8985066-599999998769988996244 Done!